HHsearch alignment for GI: 254780822 and conserved domain: cd02947
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.85 E-value=2.4e-21 Score=144.08 Aligned_cols=93 Identities=40% Similarity=0.959 Sum_probs=84.2
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCEEEEE
Q ss_conf 77999998489949999876997022213466665421000123332267232657777623156887999979989858
Q gi|254780822|r 9 KSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDGKVIDR 88 (107)
Q Consensus 9 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 88 (107)
T Consensus 1 ~~~~~-~i~~~~~vlv~f~a~wC~~C~~~~p~l~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~ 78 (93)
T cd02947 1 EEFEE-LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP-KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred CCHHH-HHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCC-CEEEEEECCCCCHHHHHCCCCCCCCCEEEEECCEEEEE
T ss_conf 98789-96089959999978998262023601223224445-45999955765953530578673696899989989999
Q ss_pred EECCCCCHHHHHHHHH
Q ss_conf 8748999899999998
Q gi|254780822|r 89 MMPGASSQSDIIEWIL 104 (107)
Q Consensus 89 ~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 79 ~-~G~~~~~~l~~~i~ 93 (93)
T cd02947 79 V-VGADPKEELEEFLE 93 (93)
T ss_pred E-ECCCCHHHHHHHHC
T ss_conf 9-78999999999669