HHsearch alignment for GI: 254780822 and conserved domain: cd02950

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.91  E-value=3e-24  Score=160.82  Aligned_cols=93  Identities=19%  Similarity=0.530  Sum_probs=84.5

Q ss_pred             HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH--HHHHHHCCCCCCEEEEE-ECCEEEEEE
Q ss_conf             999848994999987699702221346666542100012333226723265--77776231568879999-799898588
Q gi|254780822|r   13 SEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESS--EISTRYQISSIPTLILF-KDGKVIDRM   89 (107)
Q Consensus        13 ~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~--~l~~~~~v~~~Pt~~~~-~~g~~~~~~   89 (107)
T Consensus        14 eval~ngKPvlVdFyA~WC~~Ck~maP~le~l~~~Y~dkv~fv~vNVDn~~w~~~~~~y~V~giPt~~~fd~~G~~~~~~   93 (142)
T cd02950          14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQS   93 (142)
T ss_pred             HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCEEEEE
T ss_conf             99971799789999899897788773899999999589214999978887056799981978887699986899691035


Q ss_pred             ECCCCCHHHHHHHHHHC
Q ss_conf             74899989999999841
Q gi|254780822|r   90 MPGASSQSDIIEWILSR  106 (107)
Q Consensus        90 ~~g~~~~~~l~~~i~~~  106 (107)
T Consensus        94 -iG~~pe~~l~~~l~aL  109 (142)
T cd02950          94 -IGLQPKQVLAQNLDAL  109 (142)
T ss_pred             -CCCCCHHHHHHHHHHH
T ss_conf             -3769889999999999