HHsearch alignment for GI: 254780822 and conserved domain: cd02950
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.91 E-value=3e-24 Score=160.82 Aligned_cols=93 Identities=19% Similarity=0.530 Sum_probs=84.5
Q ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH--HHHHHHCCCCCCEEEEE-ECCEEEEEE
Q ss_conf 999848994999987699702221346666542100012333226723265--77776231568879999-799898588
Q gi|254780822|r 13 SEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESS--EISTRYQISSIPTLILF-KDGKVIDRM 89 (107)
Q Consensus 13 ~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~--~l~~~~~v~~~Pt~~~~-~~g~~~~~~ 89 (107)
T Consensus 14 eval~ngKPvlVdFyA~WC~~Ck~maP~le~l~~~Y~dkv~fv~vNVDn~~w~~~~~~y~V~giPt~~~fd~~G~~~~~~ 93 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCEEEEE
T ss_conf 99971799789999899897788773899999999589214999978887056799981978887699986899691035
Q ss_pred ECCCCCHHHHHHHHHHC
Q ss_conf 74899989999999841
Q gi|254780822|r 90 MPGASSQSDIIEWILSR 106 (107)
Q Consensus 90 ~~g~~~~~~l~~~i~~~ 106 (107)
T Consensus 94 -iG~~pe~~l~~~l~aL 109 (142)
T cd02950 94 -IGLQPKQVLAQNLDAL 109 (142)
T ss_pred -CCCCCHHHHHHHHHHH
T ss_conf -3769889999999999