HHsearch alignment for GI: 254780822 and conserved domain: cd02975
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.18 E-value=8.5e-06 Score=54.52 Aligned_cols=86 Identities=26% Similarity=0.458 Sum_probs=68.7
Q ss_pred CCCE-EEEEEC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECC-EEEEEEECCCCC
Q ss_conf 9949-999876-9970222134666654210001233322672326577776231568879999799-898588748999
Q gi|254780822|r 19 SNPV-VVDFWA-SWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQISSIPTLILFKDG-KVIDRMMPGASS 95 (107)
Q Consensus 19 ~~~v-lv~f~a-~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~~g~~~ 95 (107)
T Consensus 20 ~~pV~ivvF~~~~~c~yc~~t~~ll~ela~ls-dKi~~~~~~~~~d~e~a~k~gVer~Pti~i~~~~~~~~~irf~GiP~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHCCEECCEEEEECCCCCCCCEEEEECCC
T ss_conf 99869999957988711699999999999748-85389996676697999983981465799974888755269950786
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999984
Q gi|254780822|r 96 QSDIIEWILS 105 (107)
Q Consensus 96 ~~~l~~~i~~ 105 (107)
T Consensus 99 G~Ef~slie~ 108 (113)
T cd02975 99 GYEFASLIED 108 (113)
T ss_pred CHHHHHHHHH
T ss_conf 2769999999