HHsearch alignment for GI: 254780822 and conserved domain: cd02982
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.89 E-value=7.7e-05 Score=49.00 Aligned_cols=97 Identities=13% Similarity=0.242 Sum_probs=75.2
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC--CCCEEEEEECCEEE
Q ss_conf 7799999848994999987699702221346666542100012333226723265777762315--68879999799898
Q gi|254780822|r 9 KSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEESSEISTRYQIS--SIPTLILFKDGKVI 86 (107)
Q Consensus 9 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~g~~~ 86 (107)
T Consensus 3 ~~~~~~-~~~~~p~~~lF~~~~~~~~~~~~~~~~~vAk~~kgki~Fv~~d~~~~~~~l~~~gl~~~~~P~~~i~~~~~~~ 81 (103)
T cd02982 3 ETFFNY-EESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGK 81 (103)
T ss_pred HHHHHH-HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
T ss_conf 028889-8659987999956980559999999999999821727899970287288999859984549769998633067
Q ss_pred EEEECC-CCCHHHHHHHHHHC
Q ss_conf 588748-99989999999841
Q gi|254780822|r 87 DRMMPG-ASSQSDIIEWILSR 106 (107)
Q Consensus 87 ~~~~~g-~~~~~~l~~~i~~~ 106 (107)
T Consensus 82 Ky~~~~~~~~~e~l~~F~~~~ 102 (103)
T cd02982 82 KYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
T ss_conf 568985656999999999974