HHsearch alignment for GI: 254780822 and conserved domain: cd03002
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.95 E-value=1.7e-27 Score=179.43 Aligned_cols=103 Identities=27% Similarity=0.566 Sum_probs=94.9
Q ss_pred CEEEECHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHCCCCCCEEEE
Q ss_conf 517757677999998489949999876997022213466665421000123332267232--657777623156887999
Q gi|254780822|r 2 SALKVDTKSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIEE--SSEISTRYQISSIPTLIL 79 (107)
Q Consensus 2 ~~i~i~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~i~~~~vd~d~--~~~l~~~~~v~~~Pt~~~ 79 (107)
T Consensus 1 pV~el~~~nFd~~V~~~~~~~lV~FyApWC~~Ck~~~P~~~~~a~~~~~~~~~~~vd~d~~~~~~i~~~~~I~~~PTi~~ 80 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CEEEECHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCCCEEEE
T ss_conf 96997626089998559983999998886811677679999999980887228999656342465798769844887999
Q ss_pred EECCEEEE----EEECCCCCHHHHHHHHH
Q ss_conf 97998985----88748999899999998
Q gi|254780822|r 80 FKDGKVID----RMMPGASSQSDIIEWIL 104 (107)
Q Consensus 80 ~~~g~~~~----~~~~g~~~~~~l~~~i~ 104 (107)
T Consensus 81 f~~G~~~~k~~~~~y~G~Rt~~~i~~Fil 109 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 95964047778625578889999999659