BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780822|ref|YP_003065235.1| thioredoxin [Candidatus
Liberibacter asiaticus str. psy62]
         (107 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780822|ref|YP_003065235.1| thioredoxin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 107

 Score =  211 bits (537), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MSALKVDTKSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIE 60
           MSALKVDTKSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIE
Sbjct: 1   MSALKVDTKSFDSEVLECSNPVVVDFWASWCRPCVKLSPIIDDIADELADKVKITKLDIE 60

Query: 61  ESSEISTRYQISSIPTLILFKDGKVIDRMMPGASSQSDIIEWILSRV 107
           ESSEISTRYQISSIPTLILFKDGKVIDRMMPGASSQSDIIEWILSRV
Sbjct: 61  ESSEISTRYQISSIPTLILFKDGKVIDRMMPGASSQSDIIEWILSRV 107


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 352

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 45 ADELADKVKITKLDIEESSEISTRYQISSIPTL 77
          A +L +   I K  I+E  EIS  Y I+  P +
Sbjct: 11 AQDLYNANLIKKEQIDEIKEISNHYSIALTPVI 43


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score = 21.2 bits (43), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 39  PIIDDIADELADKVKI 54
           P+++DI DE A+ V+I
Sbjct: 296 PLLEDIRDESAEDVRI 311


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 20.8 bits (42), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 39  PIIDDIADELADKVKITKLDIEESSE 64
           P I  + DE+AD + + + DIE + +
Sbjct: 590 PYIVVVIDEMADLMMVARKDIESAVQ 615


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 20.8 bits (42), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 78  ILFKDGKVIDRMMPGASSQSDIIEWIL 104
           + FK GK+   + P  S +S II  ++
Sbjct: 374 LCFKSGKMTALVGPSGSGKSTIINLLM 400


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score = 20.4 bits (41), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 56  KLDIEESSEISTRYQISSIPTLILFKDG 83
           + D++ S+ I+ RY   +    I++ DG
Sbjct: 101 RADVKRSAFITVRYMDCNAQHQIIYADG 128


>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 216

 Score = 20.4 bits (41), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 50  DKVKITKLDIEESSE 64
           DKV ++++DIEE S+
Sbjct: 202 DKVLMSRIDIEEKSK 216


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,149
Number of Sequences: 1233
Number of extensions: 2158
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 328,796
effective HSP length: 62
effective length of query: 45
effective length of database: 252,350
effective search space: 11355750
effective search space used: 11355750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)