HHsearch alignment for GI: 254780823 and conserved domain: COG1074
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair].
Probab=100.00 E-value=4.4e-39 Score=272.77 Aligned_cols=282 Identities=15% Similarity=0.038 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH------HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--C
Q ss_conf 99999999999999753248889899999999874434------422768809998345661679999999861489--6
Q gi|254780823|r 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN--G 255 (1040)
Q Consensus 184 ~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~------~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~--~ 255 (1040)
T Consensus 330 l~~l~~~~~~~~~~~K~~r~~ldFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~ 409 (1139)
T COG1074 330 LLKLLEELIERYDAEKRQRNALDFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILSRLFAGFKAGN 409 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999998857789899999999998458399999998479858874034599889999999972566778
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH----HH-HHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89982486321078886433420123333344467636----89-99999762999666025776664536777754442
Q gi|254780823|r 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ----YS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 (1040)
Q Consensus 256 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1040)
T Consensus 410 ~~lF~VGD~KQSIY~FRgAD~~~f~~a~~~~~~~~~~~L~~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~ 489 (1139)
T COG1074 410 RTLFLVGDPKQSIYRFRGADIFTFLEAASSEKAFARITLETNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARN 489 (1139)
T ss_pred CCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
T ss_conf 50799747347655313789789999851433343420466667809999999999962554057777875165530367
Q ss_pred HCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH----------HCCCEEEEEECCCCHHH
Q ss_conf 01112210000001235676532133781599559989999999999999864----------22984999802641135
Q gi|254780823|r 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----------ENKKKSALITADRNLAR 400 (1040)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~----------~~~~~~avv~~d~~~~~ 400 (1040)
T Consensus 490 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~ 568 (1139)
T COG1074 490 GSPGSVNGEPLPALKFWEEEDDWTAPENEED-EREIADLEARQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAA 568 (1139)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEECCCHHHH
T ss_conf 7766667643103554226644556678400-767999999999999999873776446778898425588954836799
Q ss_pred HHHHHHHHH-CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 788843551-377766569003528898999999999837999789999862965456679389999
Q gi|254780823|r 401 RVKLELTRF-GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 (1040)
Q Consensus 401 ~v~~~L~~~-gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~ 466 (1040)
T Consensus 569 ~i~~aL~~~~~ipv~~~~r~~~~~~~e~~dll~lL~~il~P~~d~~L~a~L~Spifgl~~d~L~~l~ 635 (1139)
T COG1074 569 AIERALKKAGIIPVYLSNRSSLFETLEAQDLLALLRAILNPEDDLPLAALLRSPLFGLTEDDLAALA 635 (1139)
T ss_pred HHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999998646997885786563155999999999999708543278999982756699999999984