HHsearch alignment for GI: 254780823 and conserved domain: COG2887
>COG2887 RecB family exonuclease [DNA replication, recombination, and repair].
Probab=99.98 E-value=9.5e-31 Score=218.11 Aligned_cols=262 Identities=27% Similarity=0.396 Sum_probs=200.6
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78004577642836888976328888872124899889989999999999861258983478999999999996532798
Q gi|254780823|r 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 (1040)
Q Consensus 770 lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1040)
T Consensus 1 ls~s~~~~l~r~p~~~~a~~i~~l~~~~~~~e~~~~~~~g~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (269)
T COG2887 1 LSVSRAEALRRCPYLFYARRILALPPLGTRAEEPEAAVRGTLLHAILEALVGE-RYHAAAAALAKLAWLLRKELAEAELP 79 (269)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96535756255851699998635377875100244243354799999988631-24432031677765555544310233
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEEEE-EEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCH
Q ss_conf 66999999999999999999--99732468859999965-6889788237999999788887998589997268534688
Q gi|254780823|r 850 PHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIP-AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 (1040)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~E~~-~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~ 926 (1040)
T Consensus 80 ~~~~~~~~~r~~~~~~~~~~~~~e~~r~~~~~~~~~e~~~~~~~i~~~-i~l~G~aDRid~~~~g~i~ilDYKTG~~p~~ 158 (269)
T COG2887 80 GYTDAEWLDRLRARARAFLVYDWERERGTAFHAWLEEERGAELLIDGG-IRLRGRADRIDKDADGELEILDYKTGKSPSA 158 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCC-CEECCEEEECCCCCCCCEEEEEEECCCCCCH
T ss_conf 346620348899866545345687616773336655522304673034-0221143000247888468998634888624
Q ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79842301216999999982886777855742138886068665543456545589888999999999999999848898
Q gi|254780823|r 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus 927 ~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
T Consensus 159 a~~~~~~~~ql~~~~~~l~~~~~~---~~~p~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 235 (269)
T COG2887 159 ARAPAAVSPQLALEALALIEGRFR---GVEPGQLRLVYLRKSGRVGEAPDNREQLPQLALAREALAELAELLAGLEVRPR 235 (269)
T ss_pred HHCHHCCCHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 332111053468889988714556---66788724888657776677850666540057799999999875345543445
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 855554510156689865442014431021
Q gi|254780823|r 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 (1040)
Q Consensus 1007 ~f~~~~~~~~~~~~~~~y~~l~r~~ew~~~ 1036 (1040)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T COG2887 236 GYSSRCDLCPHQDLCPAYGGLARLLEGSAD 265 (269)
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 621002444444557764446655778888