HHsearch alignment for GI: 254780823 and conserved domain: COG2887

>COG2887 RecB family exonuclease [DNA replication, recombination, and repair].
Probab=99.98  E-value=9.5e-31  Score=218.11  Aligned_cols=262  Identities=27%  Similarity=0.396  Sum_probs=200.6

Q ss_pred             CCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78004577642836888976328888872124899889989999999999861258983478999999999996532798
Q gi|254780823|r  770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP  849 (1040)
Q Consensus       770 lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  849 (1040)
T Consensus         1 ls~s~~~~l~r~p~~~~a~~i~~l~~~~~~~e~~~~~~~g~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~   79 (269)
T COG2887           1 LSVSRAEALRRCPYLFYARRILALPPLGTRAEEPEAAVRGTLLHAILEALVGE-RYHAAAAALAKLAWLLRKELAEAELP   79 (269)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             96535756255851699998635377875100244243354799999988631-24432031677765555544310233


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEEEE-EEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCH
Q ss_conf             66999999999999999999--99732468859999965-6889788237999999788887998589997268534688
Q gi|254780823|r  850 PHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIP-AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK  926 (1040)
Q Consensus       850 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~E~~-~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~  926 (1040)
T Consensus        80 ~~~~~~~~~r~~~~~~~~~~~~~e~~r~~~~~~~~~e~~~~~~~i~~~-i~l~G~aDRid~~~~g~i~ilDYKTG~~p~~  158 (269)
T COG2887          80 GYTDAEWLDRLRARARAFLVYDWERERGTAFHAWLEEERGAELLIDGG-IRLRGRADRIDKDADGELEILDYKTGKSPSA  158 (269)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCC-CEECCEEEECCCCCCCCEEEEEEECCCCCCH
T ss_conf             346620348899866545345687616773336655522304673034-0221143000247888468998634888624


Q ss_pred             HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             79842301216999999982886777855742138886068665543456545589888999999999999999848898
Q gi|254780823|r  927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus       927 ~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
T Consensus       159 a~~~~~~~~ql~~~~~~l~~~~~~---~~~p~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~  235 (269)
T COG2887         159 ARAPAAVSPQLALEALALIEGRFR---GVEPGQLRLVYLRKSGRVGEAPDNREQLPQLALAREALAELAELLAGLEVRPR  235 (269)
T ss_pred             HHCHHCCCHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             332111053468889988714556---66788724888657776677850666540057799999999875345543445


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             855554510156689865442014431021
Q gi|254780823|r 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 (1040)
Q Consensus      1007 ~f~~~~~~~~~~~~~~~y~~l~r~~ew~~~ 1036 (1040)
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (269)
T COG2887         236 GYSSRCDLCPHQDLCPAYGGLARLLEGSAD  265 (269)
T ss_pred             CCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             621002444444557764446655778888