HHsearch alignment for GI: 254780823 and conserved domain: COG4343
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms].
Probab=97.32 E-value=0.01 Score=34.27 Aligned_cols=226 Identities=16% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCCCCCHHHHHHCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCC----HHHHHHHH
Q ss_conf 677800457764283--6888976328888872124899889989999999999861258-----983----47899999
Q gi|254780823|r 768 RTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNT----PEINHLMK 836 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP--~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~-----~~~----~~~~~~l~ 836 (1040)
T Consensus 42 ~~lslSdi~-y~yCpt~RdvYLk~Vlg~Rge~~-----~~l~lG~aIHea~~~~~~e~k~~~~sg~sp~~sv~~d~~~~~ 115 (281)
T COG4343 42 VRLSLSDIV-YGYCPTGRDVYLKRVLGVRGEGG-----FPLLLGAAIHEAFAKAIEEHKSLIYSGESPRESVLEDAREMA 115 (281)
T ss_pred CCCCHHHHH-CCCCCCCHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 575498863-26788740668999862034677-----430367899999999999999875045683312067899987
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 999999653279866999999999999999999-9973246885999996568897882379999997888879985899
Q gi|254780823|r 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 (1040)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I 915 (1040)
T Consensus 116 ~~~~k~-----v~~~~~~~~~~~y~~~~~e~~~~tsds~~~~~~Pv~vE----~~vDGspLGlS~lv~-~D~~-~~l~vv 184 (281)
T COG4343 116 NILAKR-----VWARLNEYCEISYMAVRSEKASRTSDSALSIGAPVLVE----FNVDGSPLGLSDLVR-VDAL-VGLPVV 184 (281)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEE----ECCCCCCCCCCCEEC-CHHH-CCCCEE
T ss_conf 789888-----88988778899999999876542244101312535898----147897455533223-0010-367659
Q ss_pred EECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 97268534688798423012169999999828867778557421388860686655434565455898889999999999
Q gi|254780823|r 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 (1040)
Q Consensus 916 vDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 995 (1040)
T Consensus 185 ~elKvG~~---~e~hr---LalAGYAlAiEa~--~ei-PVD~G~li~vtvN~~vk~~~~l~~i~----d~lRseFLe~RD 251 (281)
T COG4343 185 VELKVGSY---REVHR---LALAGYALAIEAD--TEI-PVDYGVLISVTVNSGVKIKARLVYID----DSLRSEFLEERD 251 (281)
T ss_pred EEEECCCH---HHHHH---HHHHHHHHHHHHH--HCC-CCCEEEEEEEEECCCEEEEEEEEECC----HHHHHHHHHHHH
T ss_conf 99941652---68999---8874467653241--058-73235799999768606888999738----378899998778
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999998488988555545101566898654420
Q gi|254780823|r 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 996 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
T Consensus 252 ~~~div~~g~DPG-----~a~~C~~~C~F~~~C 279 (281)
T COG4343 252 RVADIVEYGSDPG-----LAKSCPSGCPFYEVC 279 (281)
T ss_pred HHHHHHHCCCCCC-----CCCCCCCCCCHHHHC
T ss_conf 8999997388989-----998899998458751