HHsearch alignment for GI: 254780823 and conserved domain: PRK10876
>PRK10876 recB exonuclease V subunit beta; Provisional.
Probab=100.00 E-value=3.7e-37 Score=260.13 Aligned_cols=255 Identities=12% Similarity=0.033 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999999997532488898999999998744-------344227688099983456616799999998614896899824
Q gi|254780823|r 189 KIASKYWTERLVELNASSPVGYQIALMRAEA-------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 (1040)
Q Consensus 189 ~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-------~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~ 261 (1040)
T Consensus 333 ~~~~~~~~~~K~~~~~ldF~DLl~~l~~~L~~~~~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~~~~~LfmV 412 (1181)
T PRK10876 333 AEIRETVAQEKRRRGELGFDDMLSRLDSALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQPETALLLI 412 (1181)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999981898879999999998646876999999985185644023204889999999999647998816998
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC----
Q ss_conf 8632107888643342012333334446763689999997629996660257766645367777544420111221----
Q gi|254780823|r 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS---- 337 (1040)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 337 (1040)
T Consensus 413 GDpKQSIY~FRgADi~~yl~a~~~~~--~~-------------------~~L~~NfRS~~~vv~~vN~lF~~~~~~f~~~ 471 (1181)
T PRK10876 413 GDPKQAIYAFRGADIFTYMKARSEVS--AH-------------------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 (1181)
T ss_pred ECCHHHHHHCCCCCHHHHHHHHHCCC--CE-------------------EECCCCCCCCHHHHHHHHHHHHHCCCHHHCC
T ss_conf 26436655225678999998632435--53-------------------5887688994799999999997165302104
Q ss_pred -----CHHH-CCCCCCCCCCCCCCCCCCEEE--------ECCCHHHHHHHHHHHHHHHHH-----------------HCC
Q ss_conf -----0000-001235676532133781599--------559989999999999999864-----------------229
Q gi|254780823|r 338 -----DMRN-TDILENKIPNIQKCFSDVALI--------EADNEREEAISIAIALRMSLD-----------------ENK 386 (1040)
Q Consensus 338 -----~~~~-~~~~~~~~~~~~~~~~~v~~~--------~a~~~~~Ea~~ia~~lr~~~~-----------------~~~ 386 (1040)
T Consensus 472 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~A~~I~~lL~~~~~~~~~~~~~~~~Rpl~~ 551 (1181)
T PRK10876 472 EIPFIPVKSAGKNQALRFVVKGETQPAMKFWLMEGESCGVGDYQQTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRA 551 (1181)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 67764355444454544145788875300112687654601489999999999999998532334045414676576772
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCC-CCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 84999802641135788843551377-7665690035288989999999998379997899998629654566793899
Q gi|254780823|r 387 KKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 (1040)
Q Consensus 387 ~~~avv~~d~~~~~~v~~~L~~~gip-v~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~ 464 (1040)
T Consensus 552 ~DIaILvRs~~~a~~i~~aL~~~gIPsv~~s~~~~~f~s~Ea~~ll~lL~al~~P~~d~~L~a~L~Spl~g~~~~eL~~ 630 (1181)
T PRK10876 552 SDISVLVRSRQEAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWLLQAVLAPERENTLRSALATSMMGLNALDIET 630 (1181)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 1168884461469999999997699738724774111139999999999998597972999999836645979999998