HHsearch alignment for GI: 254780823 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=99.92 E-value=6.1e-20 Score=147.23 Aligned_cols=243 Identities=12% Similarity=0.029 Sum_probs=145.7
Q ss_pred CCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHHHHCCCCCCCCCCCC-CCC-HHHHHHHHHH
Q ss_conf 89813322206762796899999999985118886514033125776565540454334677888-881-8999999999
Q gi|254780823|r 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSN-IQRLLELARL 115 (1040)
Q Consensus 38 ~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~~~~~~~-~~~-~~r~~~l~~l 115 (1040)
T Consensus 238 ~~~P~---~ILaLTFT~kAA~EMreRl~~~lg~~~---v~~~TFHSlal~ILr~~~~~~p~is~~~~d~~~r~~~~i~~~ 311 (684)
T PRK11054 238 QAQPE---QILLLAFGRKAAEEMDERIRERLGTED---ITARTFHALALHIIQQGSKKVPVISKLENDSKARHALWIAHW 311 (684)
T ss_pred CCCHH---HEEEEECCHHHHHHHHHHHHHHCCCCC---EEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99866---778686349999999999997549998---378659999999999844457876620004677787799999
Q ss_pred HHHHHHHHHHHCC---CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHCCHHCCHHHHHHHHH
Q ss_conf 9999863100000---0122--3211135697889998999999999999759997----89874002202079999999
Q gi|254780823|r 116 ILIWRNKLPDIIK---DLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAAD 186 (1040)
Q Consensus 116 ~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~----~~L~~l~~~~~~~~w~~~~~ 186 (1040)
T Consensus 312 l~~~~~~~~~~k~~~~~L~~e~~~~i-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 390 (684)
T PRK11054 312 LKQCSEKKAQAKGWRKWLTEEMKWPV-PEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIK 390 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98865546666678876555540466-53000131779999999999998764310125888762363778898887789
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999999753248889899999999874434422768809998345661679999999861489689982486321
Q gi|254780823|r 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 (1040)
Q Consensus 187 fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~ 266 (1040)
T Consensus 391 l~~ply~aYe~~Lk~~~~IDFdDmI~~a~~ll~~~~~~~~~ryILVDEfQDiS~~Q~~Ll~aL~~~~~~~~LfaVGDD~Q 470 (684)
T PRK11054 391 LMAPLLKAWKGALKAENAVDFSGLIHQAVVILEKGRFISPWKHILVDEFQDISPQRAALLEALRKQNSQTTLFAVGDDWQ 470 (684)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 99999999999998759988799999999998707144237689987633699999999999873399975999806742
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 078886433420123333344
Q gi|254780823|r 267 PTAIWNTITEKSTNITSSNTT 287 (1040)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~ 287 (1040)
T Consensus 471 SIYrFrGAdi~~~~~F~~~F~ 491 (684)
T PRK11054 471 AIYRFSGADVSLTTAFHERFG 491 (684)
T ss_pred HEEEECCCCHHHHHHHHHHCC
T ss_conf 101126888489998987679