HHsearch alignment for GI: 254780823 and conserved domain: PRK11069
>PRK11069 recC exonuclease V subunit gamma; Provisional.
Probab=100.00 E-value=8e-39 Score=271.08 Aligned_cols=905 Identities=13% Similarity=0.105 Sum_probs=479.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf 98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~ 88 (1040)
T Consensus 2 ~~vy~SNr-le~L~~~l~~-~l~-~~P--l~~P--f~~e~IlVqS~gm~~WL~~~LA~~~GIaAni--~Fp~P~~fiw~l 72 (1122)
T PRK11069 2 FTVYHSNQ-LDVLKALMVF-LIE-REP--LDDP--FEPEMILVQSPGMAQWLQMTLAQKFGIAANI--DFPLPATFIWDM 72 (1122)
T ss_pred CEEECCCC-HHHHHHHHHH-HHH-HCC--CCCC--CCCCEEEECCHHHHHHHHHHHHHHHCCEEEE--CCCCHHHHHHHH
T ss_conf 77871468-9999999999-998-688--9899--8774798697679999999999984906753--489979999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
T Consensus 73 ~~~vl~d-vp~~s~f~k~~l~Wrl~~lLp~ll~~~~f~~L~-----~yL~~d~~~~k~~qLA~riAdlFDqYlvYRPdw- 145 (1122)
T PRK11069 73 FTRVLPD-IPKESAFNKEAMTWKLMTLLPQLLERPEFTPLR-----HYLTDDEDKRKLFQLAAKIADLFDQYLVYRPEW- 145 (1122)
T ss_pred HHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9986489-822378863212899999857754396438999-----998118861269999999999999998544999-
Q ss_pred HHHHCCHH------CCHHHHHHHHHHHHHHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHHHHC--CCCCEEEEEE
Q ss_conf 98740022------0207999999999999999999753---2488--89899999999874434422--7688099983
Q gi|254780823|r 168 DLHALKNE------KYGMWWLLAADFLKIASKYWTERLV---ELNA--SSPVGYQIALMRAEAEHLMK--GTKGPIIIAG 234 (1040)
Q Consensus 168 ~L~~l~~~------~~~~~w~~~~~fL~~~~~~~~~~l~---~~g~--~d~~~~~~~~~~~~~~~~~~--~~~~~i~v~g 234 (1040)
T Consensus 146 -L~~We~g~~~~~l~~~~~WQ~~L---------Wr~L~~~~~~~~~~~~hRa~l~~~fi~~L~~~~~~~~~LP~Ri~vFG 215 (1122)
T PRK11069 146 -LAQWEAGQLVEGLGDAQPWQAPL---------WKALVEYTHALGQPRWHRANLYQRFIETLESATTCPPGLPKRVFICG 215 (1122)
T ss_pred -HHHHHCCCCCCCCCCCCCHHHHH---------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf -99997699977887444459999---------99999876431799645899999999998447877113998389973
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH------HHH----C-CC--------CCCC------CCCC
Q ss_conf 45661679999999861489689982486321078886433------420----1-23--------3333------4446
Q gi|254780823|r 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------EKS----T-NI--------TSSN------TTYS 289 (1040)
Q Consensus 235 ~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~----~-~~--------~~~~------~~~~ 289 (1040)
T Consensus 216 is~Lpp~~L~~L~aLs~~~dV~l~~~nPc~~yW~Di~d~~~l~rl~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1122)
T PRK11069 216 ISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIRDPAFLAKLLARQRRHSFEDRELPLFRDDENAEQLFNEDGEQDV 295 (1122)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCC
T ss_conf 68689999999999856561799703877777644206688877777766654300234322464202331022011024
Q ss_pred CCHHHHHHHHHHHCCCCHHHCCCCC------------CCCCCCHHHHHHHHHHHCCCCCC---CHHHCCCCCCCCCCCCC
Q ss_conf 7636899999976299966602577------------66645367777544420111221---00000012356765321
Q gi|254780823|r 290 THPQYSLAKLLDFLDIKREDVKRLG------------NVSNEMYGRSMVISKSFLPPDTS---DMRNTDILENKIPNIQK 354 (1040)
Q Consensus 290 ~~~~~~~~~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 354 (1040)
T Consensus 296 gnP------LLAswGk~GRd~~~lL~~l~~~~~~~~f~~~~~~sLL~~lQ~dIL~l~~~~~~~~~~~~~~~~~~k~~l~~ 369 (1122)
T PRK11069 296 GNP------LLASWGKLGRDNIYLLSQLESSQELDAFVDIEPDNLLHNIQADILELEDHAVAGVNDEEFSRSDHKRPLDP 369 (1122)
T ss_pred CCC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 882------88774376899999998476644210368999823999999999851430124565111233223467888
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEEEEEECCCCHHHHHHHHHH-H----HCCCCCCCCCCHHHHCH
Q ss_conf 3378159955998999999999999986422----9849998026411357888435-5----13777665690035288
Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELT-R----FGINIDISAGIPLSTTL 425 (1040)
Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~avv~~d~~~~~~v~~~L~-~----~gipv~~s~g~pL~~~p 425 (1040)
T Consensus 370 ~D~Si~ih~CHS~~REVEvLhD~LL~~~~~dp~L~PrDIlVM~PDI~~YaP~I~AVFg~~~~~r~IP~~IaDr~~~~~~p 449 (1122)
T PRK11069 370 DDRSLSFHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGNAPGERYLPFAISDRRARQSHP 449 (1122)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCH
T ss_conf 99846998479859999999999999985299998311688769878876899998389987886986771755212169
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCC-------------C-CCCCHH
Q ss_conf 989999999998379997899998629654--566793899999997322321045577-------------7-811178
Q gi|254780823|r 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS-------------Y-DIMDLK 489 (1040)
Q Consensus 426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~l~ 489 (1040)
T Consensus 450 l~~a~l~LL~L~~sRf~asevl~LL~~pav~~rF~l~~~dl~~l~~Wl~~aGiRWGlD~~~r~~~~lp~~~~nTW~~GL~ 529 (1122)
T PRK11069 450 VLQAFISLLSLPDSRFVAEDVLALLEVPALAARFDITEEGLRYLRQWVEESGIRWGLDDDNVRELELPATGQHTWRFGLT 529 (1122)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999846456778999999971968998849999999999999998197757787779863798534351999999
Q ss_pred HHHHHHCCCCCCCC-CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 88752201144443-45520101553432579999999899999987501100221023788999999999997236763
Q gi|254780823|r 490 SLVLDRIATQKNNT-HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 (1040)
Q Consensus 490 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 568 (1040)
T Consensus 530 RlLLGyam~~~~~~~~~ilP~~~~~g~~----ael~G~L~~fl~~L---~~~~~~l~~~~~~~~W~~~l~~ll~~ff~~~ 602 (1122)
T PRK11069 530 RMLLGYAMESAAGEWQSVLPYDESSGLI----AELAGHLASLLMQL---NIWRRGLAQPRPLEEWLPVCRQLLDDFFLPD 602 (1122)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9987702378877647657777556530----98987899999999---9999997599999999999999999984798
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECC
Q ss_conf 21114566577799999999866421376644778899999986224433566778773798034333566586378528
Q gi|254780823|r 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 (1040)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~g 648 (1040)
T Consensus 603 ~e~~~~l--~~i~~~~~~l~~~~~~a~~~~~i~l~vv~~~L~~~L~~~~~~~~F-l~G~VtFctl~PMRsIPfkvVcLLG 679 (1122)
T PRK11069 603 AETEAAL--TLIEQQWQALIEEGLDAQYGDAVPLSLLRDELAQRLDQERISQRF-LAGPVNFCTLMPMRSIPFKVVCLLG 679 (1122)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEC
T ss_conf 4158999--999999999999998468887465999999999985165644565-7897588257645688712288968
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCC
Q ss_conf 63113456666676489678856489996678889999999-985-5985999920467--7766566537888773147
Q gi|254780823|r 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724 (1040)
Q Consensus 649 l~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~-~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~ 724 (1040)
T Consensus 680 mndg~fPR~~~~~~FDLma~~pr~GDRsrRd---dDRyLFLEaLLSAr~~LyiSyvGrsirdn~e~~PSvlV~ELldyl~ 756 (1122)
T PRK11069 680 MNDGVYPRTLPPLGFDLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVSELIEYIG 756 (1122)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9867799989999987344676689998326---5799999999951431799881313688892898387999999999
Q ss_pred CC-------CH----------HHCC-------------CCCC--C-HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31-------00----------0011-------------3653--2-2347875210-12343454755676300124677
Q gi|254780823|r 725 TD-------FF----------DNLK-------------KRGQ--C-YLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTY 770 (1040)
Q Consensus 725 ~~-------~~----------~~~~-------------~~~~--~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 770 (1040)
T Consensus 757 ~~~~l~~d~~~~~~~~~~~~~~~l~~~HplqpFs~~~F~~~~~~Sya~ewl~aa~~~~~~~~~f----~~~l~~~~~~~i 832 (1122)
T PRK11069 757 QSYCLPGDEALNCDESAARVKAHLTCLHTRMPFSPQNFQPGENQSYAREWLPAASQQGKAHSEF----VQPLPFTPPEEL 832 (1122)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCC
T ss_conf 8615666434574113789986450208999989777699888880289998620468788754----458998877877
Q ss_pred CCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80045776428368889763288888721-------24899889989999999999861258983478999999999996
Q gi|254780823|r 771 SFSEIKQLINDPYAVYARRILKLDFIPHF-------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 (1040)
Q Consensus 771 S~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~ 843 (1040)
T Consensus 833 ~L~~L~~F~~~P~r~f~~~rLgv~~~~~~~~~~d~EpF~ld~L~ry~l~~~lL~~~l~---~~~~~~~~~~~~a------ 903 (1122)
T PRK11069 833 TLEELQRFWRHPVRAFFQRRLKVNFRTEESELPDDEPFVLDGLSRYQLNQQLLNALVE---QDDAERLFRRFRA------ 903 (1122)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---CCCHHHHHHHHHH------
T ss_conf 8999999998299999998439616876667756799676815551899999999981---8998999999995------
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 53279866999999999999999999997324688599999656889788237999999788887998589997268534
Q gi|254780823|r 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 (1040)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~ 923 (1040)
T Consensus 904 ~G~LP~g~~G~~~~~~~~~~~~~l~~~i~~~~~~~~----~~~i~l~~--~~~~L~G~l~~~--~~~gl---vr~r~~~l 972 (1122)
T PRK11069 904 AGKLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SLEIDLAF--NGVQLTGWLPQV--QQDGL---LRWRPGLL 972 (1122)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCEEEEEC--CCEEEEEEECCC--CCCCC---EEEECCCC
T ss_conf 699999436399999999999999999997416778----74245203--986899875342--46870---89963788
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6887984230121699999998288677785574213888606866-554345654558988899999999999999984
Q gi|254780823|r 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 (1040)
Q Consensus 924 p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1002 (1040)
T Consensus 973 ~~-~d-----~l~~Wl~HL~~ca~g~~------~~s~-~~g~~~~~~~~~p-------l~----~~~A~~~L~~ll~~y~ 1028 (1122)
T PRK11069 973 SV-AD-----GLQLWLEHLVYCASGGE------GESR-LFGRKDGEWRFPP-------LA----AEQAKAYLSQLIEGYR 1028 (1122)
T ss_pred CH-HH-----HHHHHHHHHHHHHCCCC------CCEE-EEEECCCEEEECC-------CC----HHHHHHHHHHHHHHHH
T ss_conf 97-75-----89999999999826999------8507-9997697789778-------99----8999999999999999
Q ss_pred CCCC
Q ss_conf 8898
Q gi|254780823|r 1003 NGEQ 1006 (1040)
Q Consensus 1003 ~~~~ 1006 (1040)
T Consensus 1029 ~G~~ 1032 (1122)
T PRK11069 1029 EGMS 1032 (1122)
T ss_pred HHCC
T ss_conf 9724