HHsearch alignment for GI: 254780823 and conserved domain: PRK11773
>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=100.00 E-value=2.9e-38 Score=267.38 Aligned_cols=597 Identities=12% Similarity=0.053 Sum_probs=334.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHH
Q ss_conf 88848983898893799999997112101123678981332220676279689999999998511888651403312577
Q gi|254780823|r 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 (1040)
Q Consensus 4 ~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~ 83 (1040)
T Consensus 22 ~g~~lV~AGaGSGKT~vL~~-Ria~Li~----~~gv~p~---~ILalTFTnkAA~Emk~Rl~~~l~~~~-~~~~i~TfHS 92 (722)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVH-RIAWLMQ----VENASPY---SILAVTFTNKAAAEMRHRIEQLLGTSQ-GGMWVGTFHG 92 (722)
T ss_pred CCCEEEEECCCCHHHHHHHH-HHHHHHH----CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEHHH
T ss_conf 99879997387159999999-9999998----2999878---828984589999999999998717777-8888972999
Q ss_pred HHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6565540454334677888---8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r 84 VVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 (1040)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~ 160 (1040)
T Consensus 93 fc~~iLr~~~~~~-g~~~~f~I~d~~d~~~l~k~~~~~~~~---d----~-~~~~-------------~~~~~~~i~~~k 150 (722)
T PRK11773 93 LAHRLLRAHWQDA-NLPQDFQILDSDDQLRLLKRLIKALNL---D----E-KQWP-------------PRQAQWYINGQK 150 (722)
T ss_pred HHHHHHHHHHHHH-CCCCCCEEECHHHHHHHHHHHHHHCCC---C----C-HHCC-------------HHHHHHHHHHHH
T ss_conf 9999999969983-989998787689999999999997699---8----0-0088-------------999999987776
Q ss_pred HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEEC
Q ss_conf 75999789874002202079999999999999999997532488898999999998744344-----2276880999834
Q gi|254780823|r 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGS 235 (1040)
Q Consensus 161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~ 235 (1040)
T Consensus 151 ~~~~~p~~~~~~~~~-----~~---~~~~~iy~~Y~~~~~~~~~lDFdDll~~~~~ll~~~~~v~~~~~~rf~~IlVDEf 222 (722)
T PRK11773 151 DEGLRPQHIQAYGDP-----VE---QTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLDKPHILQHYQERFRHILVDEF 222 (722)
T ss_pred HCCCCHHHHHHCCCH-----HH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECC
T ss_conf 548998897655898-----99---9999999999999987699888999999999862199999999853979999772
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
T Consensus 223 QDtn~~Q~~ll~~La~~--~~nl~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~-------------------~i~L~~ 281 (722)
T PRK11773 223 QDTNAIQYAWIRLLAGD--TGNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAE-------------------TIRLEQ 281 (722)
T ss_pred CCCCHHHHHHHHHHHCC--CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHCCCCE-------------------EEECCC
T ss_conf 35999999999986178--972899967402113330563678999987447762-------------------786144
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC--CCEEEEEE
Q ss_conf 6645367777544420111221000000123567653213378159955998999999999999986422--98499980
Q gi|254780823|r 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALIT 393 (1040)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~--~~~~avv~ 393 (1040)
T Consensus 282 NyRSt~~Il~~an~li~~n~~r-------~~k~l~~~~~~g~~i~~~~~~~~~~Ea~~Ia~~I~~~~~~g~~~~diAIL~ 354 (722)
T PRK11773 282 NYRSTANILKAANALIANNSGR-------LGKELWTDGGDGEPISLYCAFNELDEARFVVERIKQWQDNGGALSDCAILY 354 (722)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 4166657999999998632455-------555002457789860588069978999999999999987389810125775
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 26411357888435513777665690035288989999999998379997899998629654566793899999997322
Q gi|254780823|r 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 (1040)
Q Consensus 394 ~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~ 473 (1040)
T Consensus 355 Rtn~~~~~le~aL~~~gIPy~i~gg~~f~~r~eikd~la~Lrl~~np~d~~al~ril~~P~rgig~~~l~~l~~~a~~~~ 434 (722)
T PRK11773 355 RSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQ 434 (722)
T ss_pred ECCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 12164678999998659984874671011359999999998763485434999999828445889768999999999739
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 32104557778111788875220114444345520101553432579999999899999987501100221023788999
Q gi|254780823|r 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 (1040)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~ 553 (1040)
T Consensus 435 ------------~sl~~~~~~~~~~~~-----------l~~~~~~~l~~f~~l----i~~l~~-------~~~~~~l~~~ 480 (722)
T PRK11773 435 ------------LTLWQACRALLQEKV-----------LAGRAASALQRFIEL----IDALAQ-------ETADMPLHEQ 480 (722)
T ss_pred ------------CCHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHH----HHHHHH-------HHCCCCHHHH
T ss_conf ------------989999999875465-----------688899999999999----999998-------7514999999
Q ss_pred HHHHHH---HHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 999999---9972367-632111456657779999999986642137664477889999998622443356677877379
Q gi|254780823|r 554 TKLTVT---CLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 (1040)
Q Consensus 554 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 629 (1040)
T Consensus 481 ~~~i~~~~gl~~~~~~~~~~~~~~---r~~nl~el~~~~~~f~~~~~~~~--~~~L~~fL~~~~l~~~~~~~~~~~d~V~ 555 (722)
T PRK11773 481 TDRVIKDSGLRAMYEQEKGEKGQA---RIENLEELVTATRQFEYPDEDED--LTPLQAFLSHAALEAGEGQADAHEDAVQ 555 (722)
T ss_pred HHHHHHHCCHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 999999657899997314653799---99999999999999864023344--2679999999986337643456788289
Q ss_pred ECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC---
Q ss_conf 803433356658637852863113456666676489678856489996678889999999985598-5999920467---
Q gi|254780823|r 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE--- 705 (1040)
Q Consensus 630 v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~--- 705 (1040)
T Consensus 556 LmTiH~AKGLEFp~Vfl~gl~eg~fP~~~s~~~--------------~~~leEERRLfYVaiTRAk~~L~ls~~~~r~~~ 621 (722)
T PRK11773 556 LMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLEE--------------GGRLEEERRLAYVGITRAMQKLTLTYAESRRLY 621 (722)
T ss_pred EEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHC
T ss_conf 996120268667768980661798886334689--------------751089999999989887452488551254546
Q ss_pred -CCCCCCCCHHHHHHH
Q ss_conf -776656653788877
Q gi|254780823|r 706 -NNIPTIASRWLQRLL 720 (1040)
Q Consensus 706 -~~~~~~ps~~l~~l~ 720 (1040)
T Consensus 622 g~~~~~~pSRFl~eip 637 (722)
T PRK11773 622 GKEVYHRPSRFIREIP 637 (722)
T ss_pred CCCCCCCCCCCHHHCC
T ss_conf 7776788981466578