HHsearch alignment for GI: 254780823 and conserved domain: PRK13909

>PRK13909 putative recombination protein RecB; Provisional.
Probab=100.00  E-value=6.6e-33  Score=232.27  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------HCCCCCEEEEEECCCCCHHHHHHHHHHHHC-----
Q ss_conf             9999999999997532488898999999998744344--------227688099983456616799999998614-----
Q gi|254780823|r  186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVANH-----  252 (1040)
Q Consensus       186 ~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~--------~~~~~~~i~v~g~~~~~~~~~~ll~al~~~-----  252 (1040)
T Consensus       277 ~~~~~~~~~~~~~~~~~~~ldf~Dl~~~~~~lL~~~~~~~~l~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~g~  356 (911)
T PRK13909        277 KFLQLYKEAKNELIKKKNALDFDDISKKVYELLYESIDKDFLYFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKSGE  356 (911)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999994896889999999999745962689999986057689964002489999999999998762355


Q ss_pred             --CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             --896899824863210788864334201233333444676368999999762999666025776664536777754442
Q gi|254780823|r  253 --PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS  330 (1040)
Q Consensus       253 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (1040)
T Consensus       357 ~~~~~~~lf~VGD~KQSIY~FRgAd~~lf~~~~~~~-----------------~~---~~~~L~~NyRS~~~Iv~~~N~~  416 (911)
T PRK13909        357 GQSKNRSFFYVGDVKQSIYRFRGGKKELFDSVAKDF-----------------SQ---IIDNLDTNYRSSPLIVNFVNEV  416 (911)
T ss_pred             CCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHH-----------------HH---HHCCCCCCCCCCHHHHHHHHHH
T ss_conf             567887279973773110220788959999999860-----------------16---4302352679968999999999


Q ss_pred             HCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             011122100000012356765321337815995599899999999999998642--298499980264113578884355
Q gi|254780823|r  331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTR  408 (1040)
Q Consensus       331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~--~~~~~avv~~d~~~~~~v~~~L~~  408 (1040)
T Consensus       417 F~~~~~~~-------~~~~~~~~~~~g~v~v~~~~-~~~~~~~i~~~i~~l~~~g~~~~DiaILvR~~~~~~~i~~~L~~  488 (911)
T PRK13909        417 FKEKYKNY-------PKQFQNEHKSGGYVRVVESE-DDELLEQLVQQAQFLLEHGVDPDDIAILCWTNDDALSVKEYLQE  488 (911)
T ss_pred             HHHHHHCC-------CCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf             98753234-------63235545789817886688-68999999999999997798826789999456429999999997


Q ss_pred             HCCCCCCCCCCHHHHCHHHHHHHHHHHHHHC
Q ss_conf             1377766569003528898999999999837
Q gi|254780823|r  409 FGINIDISAGIPLSTTLHSSILTSLLNAIFK  439 (1040)
Q Consensus       409 ~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~  439 (1040)
T Consensus       489 ~gIp~~~~~~~~l~~~~ev~~ll~~L~~~~~  519 (911)
T PRK13909        489 QGIKAVTESSALLINQAEVKAILEALKYCLF  519 (911)
T ss_pred             CCCCEEECCCCCHHCCHHHHHHHHHHHHHHC
T ss_conf             7998797352003226999999999999857