HHsearch alignment for GI: 254780823 and conserved domain: PRK13909
>PRK13909 putative recombination protein RecB; Provisional.
Probab=100.00 E-value=6.6e-33 Score=232.27 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------HCCCCCEEEEEECCCCCHHHHHHHHHHHHC-----
Q ss_conf 9999999999997532488898999999998744344--------227688099983456616799999998614-----
Q gi|254780823|r 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252 (1040)
Q Consensus 186 ~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~--------~~~~~~~i~v~g~~~~~~~~~~ll~al~~~----- 252 (1040)
T Consensus 277 ~~~~~~~~~~~~~~~~~~~ldf~Dl~~~~~~lL~~~~~~~~l~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~g~ 356 (911)
T PRK13909 277 KFLQLYKEAKNELIKKKNALDFDDISKKVYELLYESIDKDFLYFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKSGE 356 (911)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999994896889999999999745962689999986057689964002489999999999998762355
Q ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --896899824863210788864334201233333444676368999999762999666025776664536777754442
Q gi|254780823|r 253 --PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 (1040)
Q Consensus 253 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1040)
T Consensus 357 ~~~~~~~lf~VGD~KQSIY~FRgAd~~lf~~~~~~~-----------------~~---~~~~L~~NyRS~~~Iv~~~N~~ 416 (911)
T PRK13909 357 GQSKNRSFFYVGDVKQSIYRFRGGKKELFDSVAKDF-----------------SQ---IIDNLDTNYRSSPLIVNFVNEV 416 (911)
T ss_pred CCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHH-----------------HH---HHCCCCCCCCCCHHHHHHHHHH
T ss_conf 567887279973773110220788959999999860-----------------16---4302352679968999999999
Q ss_pred HCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 011122100000012356765321337815995599899999999999998642--298499980264113578884355
Q gi|254780823|r 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTR 408 (1040)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~--~~~~~avv~~d~~~~~~v~~~L~~ 408 (1040)
T Consensus 417 F~~~~~~~-------~~~~~~~~~~~g~v~v~~~~-~~~~~~~i~~~i~~l~~~g~~~~DiaILvR~~~~~~~i~~~L~~ 488 (911)
T PRK13909 417 FKEKYKNY-------PKQFQNEHKSGGYVRVVESE-DDELLEQLVQQAQFLLEHGVDPDDIAILCWTNDDALSVKEYLQE 488 (911)
T ss_pred HHHHHHCC-------CCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 98753234-------63235545789817886688-68999999999999997798826789999456429999999997
Q ss_pred HCCCCCCCCCCHHHHCHHHHHHHHHHHHHHC
Q ss_conf 1377766569003528898999999999837
Q gi|254780823|r 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 (1040)
Q Consensus 409 ~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~ 439 (1040)
T Consensus 489 ~gIp~~~~~~~~l~~~~ev~~ll~~L~~~~~ 519 (911)
T PRK13909 489 QGIKAVTESSALLINQAEVKAILEALKYCLF 519 (911)
T ss_pred CCCCEEECCCCCHHCCHHHHHHHHHHHHHHC
T ss_conf 7998797352003226999999999999857