>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.

Probab=100.00 E-value=1.7e-35 Score=249.19 Aligned_cols=570 Identities=13% Similarity=0.088 Sum_probs=361.8 Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCC--C----CEECCEEEEHHHHHHHHHHCCCCCCCCCCC---CCCCHH Q ss_conf 7898133222067627968999999999851188--8----651403312577656554045433467788---888189 Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--K----STILPIIKSLGDVVEEKFTADLLLSYNLNP---PVSNIQ 107 (1040) Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~--~----~~~~P~i~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 107 (1040) T Consensus 45 ~~~s~~SiM---AVTFTNKAA~Em~~Ri~~~~~~~~~~~l~gMW---~GTFHglaHRlLR~Hh~Da-~LP~~FQilDs~D 117 (741) T TIGR01075 45 ENASPHSIM---AVTFTNKAAAEMRHRIEALLRKSARHQLFGMW---IGTFHGLAHRLLRAHHLDA-GLPEDFQILDSDD 117 (741) T ss_pred CCCCCCCEE---EECHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CHHHHHHHHHHHHHHHHHC-CCCCCCCEECCHH T ss_conf 789985356---32003478999999999986201143255532---3057789999998667534-6861242364065 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHH Q ss_conf 99999999999986310000001223211135697889998999999999999759997898740022020799999999 Q gi|254780823|r 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 (1040) Q Consensus 108 r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~f 187 (1040) T Consensus 118 QlrL~KRlik~~n~~e~~--------~p------P-------rq~~W~IN~qKdeGlRp~~i~~~~~d~~~~~~~----- 171 (741) T TIGR01075 118 QLRLIKRLIKSLNLDEKQ--------FP------P-------RQAMWYINNQKDEGLRPEHIEAFDNDPVERTWI----- 171 (741) T ss_pred HHHHHHHHHHHCCCCCCC--------CC------C-------HHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH----- T ss_conf 799999999863876333--------67------1-------344201036656788832357767776899999----- Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 99999999997532488898999999998744344-----2276880999834566167999999986148968998248 Q gi|254780823|r 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 (1040) Q Consensus 188 L~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~ 262 (1040) T Consensus 172 --~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg~--~~~V~~VG 247 (741) T TIGR01075 172 --KIYAEYQEACDRAGLVDFAELLLRAYELLRNKPHILQHYQERFKHILVDEFQDTNKIQYAWIRLLAGE--TGNVMIVG 247 (741) T ss_pred --HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEE T ss_conf --99999875306377345899999999975289589999987610054323245006999999996089--96379885 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHC Q ss_conf 63210788864334201233333444676368999999762999666025776664536777754442011122100000 Q gi|254780823|r 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 (1040) Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 342 (1040) T Consensus 248 DDDQsIYgwRGA~veni~~fl~dF~~~~--------------------------tirLEQNYRS~~nIL~AAN~lIanN~ 301 (741) T TIGR01075 248 DDDQSIYGWRGAQVENIQKFLKDFPIAE--------------------------TIRLEQNYRSTANILAAANALIANND 301 (741) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCC--------------------------CEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 5874201245764188899997467888--------------------------53420032217889999889985288 Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCH Q ss_conf 01235676532133781599559989999999999999864229--8499980264113578884355137776656900 Q gi|254780823|r 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIP 420 (1040) Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~--~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~p 420 (1040) T Consensus 302 ~RlGK~LwT~g~~Ge~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQSRv~Ee~L~~~~iPYriYGG~R 381 (741) T TIGR01075 302 ERLGKNLWTDGEVGEPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQSRVLEEALLRASIPYRIYGGMR 381 (741) T ss_pred CCCCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCC T ss_conf 65675301345678702576513413789999999999986589641365663255246899999974489804307863 Q ss_pred HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 352889899999999983799978999986296545667938999999973-2232104557778111788875220114 Q gi|254780823|r 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL-ELVALRGNKNSYDIMDLKSLVLDRIATQ 499 (1040) Q Consensus 421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1040) T Consensus 382 FFERqEIKdALaYLRL~~Nr~DDaAfeRViNtP~RGiG~rTld~~r~~~r~~g~tLW-------------qA~~~~---- 444 (741) T TIGR01075 382 FFERQEIKDALAYLRLIANRNDDAAFERVINTPTRGIGDRTLDEVRQAARERGLTLW-------------QAAVEL---- 444 (741) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHCCEECCCCCCCCHHHHHHHHHHHHHCCCCHH-------------HHHHHH---- T ss_conf 256788999999998714887530320300488898754679999987652074189-------------999998---- Q ss_pred CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH------HHHHHHHCCCCCCCCHH Q ss_conf 444345520101553432579999999899999987501100221023788999999------99999723676321114 Q gi|254780823|r 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL------TVTCLQNVCLDEHRKLP 573 (1040) Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~ 573 (1040) T Consensus 445 --------------~q~~~Lagra~~al~~F~~Li~~----L~~~~~~m~L~~~~d~~~k~SgL~~~Y~~ekrgg~~~~~ 506 (741) T TIGR01075 445 --------------LQEKVLAGRAASALVRFVELIEA----LAEETADMPLHEQTDHVLKDSGLREMYQQEKRGGEKGQA 506 (741) T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf --------------76336799999999999999999----987553144688899998500367899997214643235 Q ss_pred HHHHHHHHHHHHHHHHHHHHC------CCCCCCC---HHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEE Q ss_conf 566577799999999866421------3766447---7889999998622443356677877379803433356658637 Q gi|254780823|r 574 NLWFEEEGKTLSSLFSKIIET------GSCIKAN---AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 (1040) Q Consensus 574 ~~~~~~~~~~l~~~~~~~~~~------~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v 644 (1040) T Consensus 507 R~e---NLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aaLEaGe~qa~~~~~aVqLMTlHsAKGLEFp~V 583 (741) T TIGR01075 507 RIE---NLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAALEAGEGQADAGEDAVQLMTLHSAKGLEFPLV 583 (741) T ss_pred HHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCE T ss_conf 777---88999988730464645433267776777303347788778876415001010123546666563202455752 Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHH Q ss_conf 852863113456666676489678856489996678889999999985598-5999920467----77665665378887 Q gi|254780823|r 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRL 719 (1040) Q Consensus 645 ~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l 719 (1040) T Consensus 584 FlvG~EeG~FPS~~Sl---------~E~GrLEEERR-----L~YVgiTRA~~kL~ityAe~RrLyGk~~y~~pSRFi~El 649 (741) T TIGR01075 584 FLVGMEEGLFPSQMSL---------DERGRLEEERR-----LAYVGITRARKKLTITYAEARRLYGKEEYHIPSRFIREL 649 (741) T ss_pred EEEECCCCCCCCHHCC---------CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC T ss_conf 4662026778311210---------34869527888-----898997877566557688645663100268874114306 Q ss_pred HH Q ss_conf 73 Q gi|254780823|r 720 LV 721 (1040) Q Consensus 720 ~~ 721 (1040) T Consensus 650 P~ 651 (741) T TIGR01075 650 PE 651 (741) T ss_pred CH T ss_conf 56

HHsearch alignment for GI: 254780823 and conserved domain: TIGR01075