HHsearch alignment for GI: 254780823 and conserved domain: TIGR01450
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit; InterPro: IPR006697 The exodeoxyribonuclease V enzyme is a multisubunit enzyme comprised of the proteins RecB (IPR004586 from INTERPRO), RecC (this family) and RecD (IPR006344 from INTERPRO). This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (3.1.11.5 from EC) catalyzes hydrolysis of single-stranded (ss) DNA or double-stranded (ds) DNA and unwinding of the ends of dsDNA . Its nuclease activity is controlled by Chi sites (5' G-C-T-G-G-T-G-G 3') in such a way that the enzyme produces a potent single-stranded DNA substrate for homologous pairing by RecA and single-stranded DNA binding proteins.; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=99.22 E-value=2.7e-07 Score=64.20 Aligned_cols=742 Identities=14% Similarity=0.119 Sum_probs=381.4
Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHC--------CCCCEECCEEEEHHHHHHHHHHCCCC-CCCCCCCCCCCHH
Q ss_conf 78981332220676279689999999998511--------88865140331257765655404543-3467788888189
Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQ 107 (1040)
Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~--------~~~~~~~P~i~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 107 (1040)
T Consensus 27 ~~~~~~-----~~~~~~~g~~~wl~~~~~~~~~~~~g~~~g~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1207)
T TIGR01450 27 DPFEPE-----LILVQSPGLARWLKLALAEDLGCGPGGGGGVAANL--EFPLPASFIWQLFGALLPREGIPELSPFNKEA 99 (1207)
T ss_pred CCHHHH-----HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 300001-----33220125899999888764146777555300011--10240789999998522634553100023034
Q ss_pred HHHHHHHHHH--HHHHH-HHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH-----HC
Q ss_conf 9999999999--99863-10000001223---21113569788999899999999999975999789874002-----20
Q gi|254780823|r 108 RLLELARLIL--IWRNK-LPDIIKDLYPE---SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-----EK 176 (1040)
Q Consensus 108 r~~~l~~l~~--~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~-----~~ 176 (1040)
T Consensus 100 ~~w~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~w~~g~~~~~~~~ 179 (1207)
T TIGR01450 100 LSWRLLALLPDPALLERPEFRTLRRYLADGLTTDAEADSDLSKRYQLAEKLADLFDQYLVYRPDWLAAWEAGDDGLGLGD 179 (1207)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHCCC
T ss_conf 44567775045233003668899998632101110000001246788999998888877524214665422410110122
Q ss_pred CH-------HHHHHHHHHHHHHHHHHHHHHHH---CCCC----CHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHH
Q ss_conf 20-------79999999999999999997532---4888----9899999999874434422-76880999834566167
Q gi|254780823|r 177 YG-------MWWLLAADFLKIASKYWTERLVE---LNAS----SPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241 (1040)
Q Consensus 177 ~~-------~~w~~~~~fL~~~~~~~~~~l~~---~g~~----d~~~~~~~~~~~~~~~~~~-~~~~~i~v~g~~~~~~~ 241 (1040)
T Consensus 180 ~~~~~~~~d~~w~~~l---------w~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~g~~~~~~~ 250 (1207)
T TIGR01450 180 LEAKPLGADEKWQAPL---------WRALVAGVGADGAPRWPLHRANLYERFLEALRSGTEDPGLPARLFIFGISALPPG 250 (1207)
T ss_pred CHHHHCCCCHHHHHHH---------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCHH
T ss_conf 0011114201245688---------8888754331244413421567889999986313346665411001000012267
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH--H-------H----HC-CCCCCCCCCC-------CCHH-HHHHHH
Q ss_conf 9999999861489689982486321078886433--4-------2----01-2333334446-------7636-899999
Q gi|254780823|r 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--E-------K----ST-NITSSNTTYS-------THPQ-YSLAKL 299 (1040)
Q Consensus 242 ~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~--~-------~----~~-~~~~~~~~~~-------~~~~-~~~~~l 299 (1040)
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~p~~~~wg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 330 (1207)
T TIGR01450 251 YLELLAALAEHCDVHLFLPNPCREYWGDLIDPTGKYLARLLARQRTGYRLADPLLPLPQDLENAGEDSYDHGEHAAGHPL 330 (1207)
T ss_pred HHHHHHHHHHHCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999986533024577317514555321120157899988876543333320135554302344333212345541157
Q ss_pred HHHCCCCHHHCCCCCCCCCCC--------------------------HHHH-HHHHHHH--CCCCCC--CHHHCCCCCCC
Q ss_conf 976299966602577666453--------------------------6777-7544420--111221--00000012356
Q gi|254780823|r 300 LDFLDIKREDVKRLGNVSNEM--------------------------YGRS-MVISKSF--LPPDTS--DMRNTDILENK 348 (1040)
Q Consensus 300 ~~~l~~~~~~~~~~~~~~~~~--------------------------~~~~-~~~~~~~--~~a~~~--~~~~~~~~~~~ 348 (1040)
T Consensus 331 l~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~gg~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1207)
T TIGR01450 331 LASWGKLGRDFLYLLGELEASGPGGELDAFLELTTRLGTTLDEGGLPDSLLGQLQADILHLEPRPEGGPNIEEFARSGHK 410 (1207)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC
T ss_conf 88753434678988765420245443100101012302200025640467888888876411222344203444102333
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC-------C----CEEEEEECCCCHHHHHHHHH------H----
Q ss_conf 7653213378159955998999999999999986422-------9----84999802641135788843------5----
Q gi|254780823|r 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-------K----KKSALITADRNLARRVKLEL------T---- 407 (1040)
Q Consensus 349 ~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~-------~----~~~avv~~d~~~~~~v~~~L------~---- 407 (1040)
T Consensus 411 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~g~~~~p~~~p~~~~~~~p~~~~~~p~~~~~~g~~~~~~~c~ 490 (1207)
T TIGR01450 411 PPSAPLDDGSLQFHACHSPLRELEVLHDRLLALLEEDPEGQRFNPTLQPRDIVVLVPDIDAYAPYIEAVFGQAPPDGDCH 490 (1207)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 45666565430665411225788999999998740475655457877755126760450123235666523554444334
Q ss_pred -HHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf -513777665690035288989999999998379997899998629654--56679389999999732232104557---
Q gi|254780823|r 408 -RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKN--- 481 (1040)
Q Consensus 408 -~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~~~~~~~~~~~~~~~~~~~~--- 481 (1040)
T Consensus 491 p~~~~p~~~~d~~~~~~~p~~~~~~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~wg~~~~~ 570 (1207)
T TIGR01450 491 PARFLPYSLSDRSLSQREPLLEAFLHLLDLPESRFGASELLDLLDVPPLRARFGLDEDDLETLRRWVAEAGIRWGLDAEH 570 (1207)
T ss_pred CCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 11013300000000100368999999974234444489999987667888761443335899999987324413666244
Q ss_pred ------------CCCCCCHHHHHHHHCCCCCCC-CCCC--CHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------------778111788875220114444-3455--2010155343257999999989999998750110022102
Q gi|254780823|r 482 ------------SYDIMDLKSLVLDRIATQKNN-THVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 (1040)
Q Consensus 482 ------------~~~~~~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~ 546 (1040)
T Consensus 571 ~~~~~~~~~~~~~~w~~g~~~~~~g~~~~~~~~~~~~~gg~w~~-~~~~~~~~~~~~~g~~~~~---~~~l~~~~~~~~~ 646 (1207)
T TIGR01450 571 RAELGLPATDQGNTWRFGLERLLLGYALGEGAGPLWGGGGQWVL-PYDDVGGLQAELAGRLAEF---LERLSDWRRGLAE 646 (1207)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_conf 33311433210024677778877632113333301115764123-4321112578887789999---9999999986411
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 378899999999999723676321114-5665777999999998664213766447788999999862244335667787
Q gi|254780823|r 547 NLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 (1040)
Q Consensus 547 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 625 (1040)
T Consensus 647 ~~~~~~w~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 725 (1207)
T TIGR01450 647 PAPLEEWLERLLDLLDALFAVDDEGPGIELALTQLERLLVKWLADAAGAGFAPPLPLEVVRDHLAALLDGEPTSARF-LA 725 (1207)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHH-HC
T ss_conf 23578999999999888741146763268999999999999998654310001245789999998640454210001-00
Q ss_pred CCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHCCC-EEEEEE
Q ss_conf 737980343335665863785286311345666667648967885--64899966788899999999-85598-599992
Q gi|254780823|r 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM-ANGTR-HLIYTR 701 (1040)
Q Consensus 626 ~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~--~l~l~~~e~~~~~~~~~~~~-~~~a~-~v~lt~ 701 (1040)
T Consensus 726 g~~~~~~~~p~~~~p~~~~cl~g~~~g~~p~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~l~l~~~~~~~~~~~~~~ 805 (1207)
T TIGR01450 726 GGVNFCTLVPMRSLPFRVVCLLGLNDGDYPRQEPPLGFDLLAKEPGTAQRRPGDRSRRDDDRYLFLEALLSAREVLYVSY 805 (1207)
T ss_pred CCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 33201111001113400001330564556654330134455402340120334200000257899998764333210001
Q ss_pred ECCC--CCCCCCCCHHHHHHHHCCCCCCH----HHCCCC----------------------------------CCCHHHH
Q ss_conf 0467--77665665378887731473100----001136----------------------------------5322347
Q gi|254780823|r 702 SLRE--NNIPTIASRWLQRLLVLGGTDFF----DNLKKR----------------------------------GQCYLDW 741 (1040)
Q Consensus 702 ~~~~--~~~~~~ps~~l~~l~~~~~~~~~----~~~~~~----------------------------------~~~~~~~ 741 (1040)
T Consensus 806 ~g~~~~~~~~~~p~~~~~~l~~~~~~~~~~~gd~~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1207)
T TIGR01450 806 VGRDIRDNSERPPSVLLGELLDYLAAGYGLAGDENLEPDGDGARLAERLLEQHPLQPFSPRNFGPGGRPGGGPFSFAPEW 885 (1207)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHH
T ss_conf 04431256432532578999998875304665111467764579999988740444145001255532244432100567
Q ss_pred HHHHHC-CCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC
Q ss_conf 875210-1234345475567--630012467780045776428368889763288888721
Q gi|254780823|r 742 TRKLDY-TTKQPHYKRPKPF--PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 (1040)
Q Consensus 742 ~~~l~~-~~~~~~~~~~~~~--~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~ 799 (1040)
T Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 946 (1207)
T TIGR01450 886 LPAARSAEGGRPDFDAPLPGRLPLPLEPPAELGLADLLRFWANPVKAFFQQRLGVSFPEPP 946 (1207)
T ss_pred HHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8765420234553311101211443453110258999999864899999987414466420