HHsearch alignment for GI: 254780823 and conserved domain: TIGR02774

>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=100.00  E-value=3.9e-44  Score=305.95  Aligned_cols=770  Identities=16%  Similarity=0.141  Sum_probs=474.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHH
Q ss_conf             8999899999999999975999789874002202079999999999999999997532488898999999998744-344
Q gi|254780823|r  144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHL  222 (1040)
Q Consensus       144 ~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-~~~  222 (1040)
T Consensus       109 ~d~~fI~QLveLYkEL~~s~LS~~dL~~L~~~~------K~~DL~~-If~~~~~~L~~~~y~~~S~-l~~f~e~v~~g~l  180 (1116)
T TIGR02774       109 QDAQFIQQLVELYKELQKSQLSILDLEELTSPE------KREDLLA-IFEVVEAVLEEGEYEQQSK-LASFIEAVKSGKL  180 (1116)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHH------HHHHHHH-HHHHHHHHHHHHCHHHCCH-HHHHHHHHHCCCC
T ss_conf             275689999999999865365244340478854------6999999-9999999874323321176-9999998742751


Q ss_pred             H-CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHH
Q ss_conf             2-27688099983456616799999998614896899824863210788864334201233333444676368---9999
Q gi|254780823|r  223 M-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY---SLAK  298 (1040)
Q Consensus       223 ~-~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  298 (1040)
T Consensus       181 ~~~L~~~vlvvDGFtRFSAEEe~lv~~L~~~g~eiiIGaYa----SqKAY~~----------~F~~-GNlY~A~v~FL~~  245 (1116)
T TIGR02774       181 DSDLKNTVLVVDGFTRFSAEEEALVSLLHEKGVEIIIGAYA----SQKAYKS----------SFLE-GNLYQASVEFLRD  245 (1116)
T ss_pred             CHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCC----------CCCC-CCHHHHHHHHHHH
T ss_conf             02018478897178774088999999973497079974622----2253315----------7766-7423421899987


Q ss_pred             HHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf             99762999666025776664536777754442011122100000012356765321337815995599899999999999
Q gi|254780823|r  299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL  378 (1040)
Q Consensus       299 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~l  378 (1040)
T Consensus       246 LA~ky~~~a~f~~s~~~~~~~f~~~S~~lEa-----------~hDFS~~~~~l~~~d~~~l~iW~c~~QKeEvE~VAr~I  314 (1116)
T TIGR02774       246 LAQKYQTKAEFISSKHESKDSFDKLSKLLEA-----------KHDFSELALDLDDKDKDALTIWECLTQKEEVEHVARSI  314 (1116)
T ss_pred             HHHHCCCCCEECCCCCCCCHHHHHHHHHHCC-----------CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             4765288710214333143248999875145-----------33632010340256641345100125137889999999


Q ss_pred             HHHHHHC----CCEEEEEECCCCHHH-HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf             9986422----984999802641135-78884355137776656900352889899999999983799978999986296
Q gi|254780823|r  379 RMSLDEN----KKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP  453 (1040)
Q Consensus       379 r~~~~~~----~~~~avv~~d~~~~~-~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sP  453 (1040)
T Consensus       315 RqkL~~gsd~rYKdilvLLGD~~SYqLql~~IF~~Y~IPfYlGkaE~MA~HPL~~F~eSL~r~kRY~FR~EDvLNLLktg  394 (1116)
T TIGR02774       315 RQKLYEGSDYRYKDILVLLGDVDSYQLQLGKIFDKYDIPFYLGKAEPMAAHPLVQFIESLERIKRYRFRAEDVLNLLKTG  394 (1116)
T ss_pred             HHHHHCCCCCCHHHEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf             88762489630110012128777875010002221368854566560011624489999998641045078899987520


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             5456-679389999999732232104557778111788875220114444345520101553432579999999899999
Q gi|254780823|r  454 LAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT  532 (1040)
Q Consensus       454 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~  532 (1040)
T Consensus       395 Ly~~~~~~DiD~Fe~Y------~~Ya-----DIkG~~~F~~~Ft~~~~~--~F~ddGqalykydL~~LN~~R~~ll~PL~  461 (1116)
T TIGR02774       395 LYGDFSDSDIDKFEQY------IKYA-----DIKGLKKFKKTFTVNSSK--KFDDDGQALYKYDLDRLNELRQRLLAPLE  461 (1116)
T ss_pred             CCCCCCCCCCHHHHHH------HHHH-----CCCCCHHHCCCCEECCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3555771200258998------8862-----478811115764002356--76820236777647778899999988789


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             98750110022102378899999999-----9997236763211145665777999999998664213766447788999
Q gi|254780823|r  533 PLVTYKTNKNSTCGNLSISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID  607 (1040)
Q Consensus       533 ~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  607 (1040)
T Consensus       462 ~Lf~S~kq~g~~ll~k---k~~~FL~~~~l~~nl~~L~~~~s-~~E~Ek~~EVWK~ftd~L~~f~~iFgqekl~L~dFLA  537 (1116)
T TIGR02774       462 ELFKSRKQLGEKLLNK---KFLLFLKEIALAENLQKLATTKS-EVEQEKEEEVWKTFTDILEQFATIFGQEKLKLDDFLA  537 (1116)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             9998788778888754---66655200420689998752245-6544665316678999999987875336434999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CHHHHHHH---
Q ss_conf             99986224433566778773798034333566586378528631134566666764896788564899-96678889---
Q gi|254780823|r  608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-TAEKYIGQ---  683 (1040)
Q Consensus       608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~-~~e~~~~~---  683 (1040)
T Consensus       538 LL~sGM~~s~YR~vPATvDvVtvksYdLv~Pht~~FVYAlGLTq~~fPki~~n~SLltD~eR~~lN~rlaa~~~~ghfdi  617 (1116)
T TIGR02774       538 LLKSGMKASQYRTVPATVDVVTVKSYDLVEPHTKPFVYALGLTQSNFPKISQNSSLLTDEERQALNDRLAATEEDGHFDI  617 (1116)
T ss_pred             HHHHHHHCCCCCCCCEEEEEEEEEECHHCCCCCCCCCEEECCCHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEC
T ss_conf             99963311466310116547876201202766555212222441026603413677787999976025400246751303


Q ss_pred             ------HHHHHHHH--H--CCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCC--------------------
Q ss_conf             ------99999998--5--59859999204677766566537888773147310000113--------------------
Q gi|254780823|r  684 ------AAHDFEMA--N--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK--------------------  733 (1040)
Q Consensus       684 ------~~~~~~~~--~--~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~--------------------  733 (1040)
T Consensus       618 ~~~EN~KKNh~a~LSL~NsA~k~LvLS~p~l~NE~ed~~SpYL~eL~~~G~p~~~K~~~~~~~~~~d~G~YkaLLS~vv~  697 (1116)
T TIGR02774       618 ASQENLKKNHYAALSLFNSATKELVLSAPQLFNESEDKLSPYLQELIDFGVPLLEKGKNSLEEDKEDIGNYKALLSRVVA  697 (1116)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             33324315689999998876554552023341478000365789999758862121024410220024226899999999


Q ss_pred             -------------CCCCHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCHHHHHHCCHHHH
Q ss_conf             -------------6532234787521012343454755---------------676300124677800457764283688
Q gi|254780823|r  734 -------------RGQCYLDWTRKLDYTTKQPHYKRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAV  785 (1040)
Q Consensus       734 -------------~~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~lS~S~l~~~~~cP~~~  785 (1040)
T Consensus       698 ~~~~~~~~~~t~~~~tFw~V~~R~LRkkL~~q~le~P~i~~~L~~~tls~dvl~~~yP~~~pL~LSaSaLT~FYnNqY~Y  777 (1116)
T TIGR02774       698 LNRQAEDKEMTKQDKTFWSVLVRYLRKKLDQQGLEIPTITDSLSTKTLSKDVLEVLYPEDQPLKLSASALTTFYNNQYKY  777 (1116)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             85024652356123333467655766653230665765589888433047789864678796422011321355355789


Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHH
Q ss_conf             897632888887212489988998999999999986125898347899999999999-----653279866999999999
Q gi|254780823|r  786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-----FEKENLPPHIDIIWRHLF  860 (1040)
Q Consensus       786 ~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~  860 (1040)
T Consensus       778 FL~YVL~L~e~~siH--PD~R~HG~YLHrvFEr~m~~~e~--~e~Fd~~L~qaI~~t~QE~~F~~~Y~~~~Ea~yt~~iL  853 (1116)
T TIGR02774       778 FLKYVLGLEEEESIH--PDARHHGNYLHRVFERLMKDQEG--EESFDEKLNQAINETSQEEVFKALYQEDAEARYTLEIL  853 (1116)
T ss_pred             HHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             998740644223578--88441343367999998416788--96178899998520265889998604364478869999


Q ss_pred             HHHHHHHH------------HHHH-HC---CCCCE--E---EEEEEE--EEEEECC--CCEEEEEEEEEEEECCCC-CEE
Q ss_conf             99999999------------9997-32---46885--9---999965--6889788--237999999788887998-589
Q gi|254780823|r  861 HKISHSFL------------EHEE-KI---QSSIE--K---IFVNIP--AKMAIES--IGIHLTGFADRIDLLKSG-FVD  914 (1040)
Q Consensus       861 ~~~~~~~l------------~~~~-~~---~~~~~--~---~~~E~~--~~~~i~~--~~~~l~GrIDRid~~~dG-~~~  914 (1040)
T Consensus       854 ~Diar~TA~ILr~n~~i~v~~~e~~qhylGdkdWqktPqalka~~~~~~~~L~~~nh~R~~~v~G~iDRiDrLs~~~sLG  933 (1116)
T TIGR02774       854 LDIARSTAPILRDNSAIQVIKEEEAQHYLGDKDWQKTPQALKALEGKDNFQLQIDNHGREIKVRGIIDRIDRLSDGDSLG  933 (1116)
T ss_pred             HHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECEEECCCCCCEE
T ss_conf             99886122220258522047787642102540110005788860676205652056544789811660002205788214


Q ss_pred             EEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             9972685346-887984230121699999998288677785574213888606866
Q gi|254780823|r  915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF  969 (1040)
Q Consensus       915 IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~  969 (1040)
T Consensus       934 vVDYKSS~~~F~~~~FYNGL~pQL~TYl~ALk~~~p~e~~-~~~FGAmYLhmqeP~  988 (1116)
T TIGR02774       934 VVDYKSSAKKFDIAKFYNGLSPQLLTYLAALKRDKPSEIE-APIFGAMYLHMQEPK  988 (1116)
T ss_pred             EEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHCCCC
T ss_conf             5660467652364110478762479999998430444467-875520212314854