HHsearch alignment for GI: 254780823 and conserved domain: TIGR02774
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=100.00 E-value=3.9e-44 Score=305.95 Aligned_cols=770 Identities=16% Similarity=0.141 Sum_probs=474.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHH
Q ss_conf 8999899999999999975999789874002202079999999999999999997532488898999999998744-344
Q gi|254780823|r 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHL 222 (1040)
Q Consensus 144 ~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-~~~ 222 (1040)
T Consensus 109 ~d~~fI~QLveLYkEL~~s~LS~~dL~~L~~~~------K~~DL~~-If~~~~~~L~~~~y~~~S~-l~~f~e~v~~g~l 180 (1116)
T TIGR02774 109 QDAQFIQQLVELYKELQKSQLSILDLEELTSPE------KREDLLA-IFEVVEAVLEEGEYEQQSK-LASFIEAVKSGKL 180 (1116)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHH------HHHHHHH-HHHHHHHHHHHHCHHHCCH-HHHHHHHHHCCCC
T ss_conf 275689999999999865365244340478854------6999999-9999999874323321176-9999998742751
Q ss_pred H-CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHH
Q ss_conf 2-27688099983456616799999998614896899824863210788864334201233333444676368---9999
Q gi|254780823|r 223 M-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY---SLAK 298 (1040)
Q Consensus 223 ~-~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 298 (1040)
T Consensus 181 ~~~L~~~vlvvDGFtRFSAEEe~lv~~L~~~g~eiiIGaYa----SqKAY~~----------~F~~-GNlY~A~v~FL~~ 245 (1116)
T TIGR02774 181 DSDLKNTVLVVDGFTRFSAEEEALVSLLHEKGVEIIIGAYA----SQKAYKS----------SFLE-GNLYQASVEFLRD 245 (1116)
T ss_pred CHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCC----------CCCC-CCHHHHHHHHHHH
T ss_conf 02018478897178774088999999973497079974622----2253315----------7766-7423421899987
Q ss_pred HHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 99762999666025776664536777754442011122100000012356765321337815995599899999999999
Q gi|254780823|r 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 (1040)
Q Consensus 299 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~l 378 (1040)
T Consensus 246 LA~ky~~~a~f~~s~~~~~~~f~~~S~~lEa-----------~hDFS~~~~~l~~~d~~~l~iW~c~~QKeEvE~VAr~I 314 (1116)
T TIGR02774 246 LAQKYQTKAEFISSKHESKDSFDKLSKLLEA-----------KHDFSELALDLDDKDKDALTIWECLTQKEEVEHVARSI 314 (1116)
T ss_pred HHHHCCCCCEECCCCCCCCHHHHHHHHHHCC-----------CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4765288710214333143248999875145-----------33632010340256641345100125137889999999
Q ss_pred HHHHHHC----CCEEEEEECCCCHHH-HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 9986422----984999802641135-78884355137776656900352889899999999983799978999986296
Q gi|254780823|r 379 RMSLDEN----KKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 (1040)
Q Consensus 379 r~~~~~~----~~~~avv~~d~~~~~-~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sP 453 (1040)
T Consensus 315 RqkL~~gsd~rYKdilvLLGD~~SYqLql~~IF~~Y~IPfYlGkaE~MA~HPL~~F~eSL~r~kRY~FR~EDvLNLLktg 394 (1116)
T TIGR02774 315 RQKLYEGSDYRYKDILVLLGDVDSYQLQLGKIFDKYDIPFYLGKAEPMAAHPLVQFIESLERIKRYRFRAEDVLNLLKTG 394 (1116)
T ss_pred HHHHHCCCCCCHHHEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 88762489630110012128777875010002221368854566560011624489999998641045078899987520
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5456-679389999999732232104557778111788875220114444345520101553432579999999899999
Q gi|254780823|r 454 LAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 (1040)
Q Consensus 454 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 532 (1040)
T Consensus 395 Ly~~~~~~DiD~Fe~Y------~~Ya-----DIkG~~~F~~~Ft~~~~~--~F~ddGqalykydL~~LN~~R~~ll~PL~ 461 (1116)
T TIGR02774 395 LYGDFSDSDIDKFEQY------IKYA-----DIKGLKKFKKTFTVNSSK--KFDDDGQALYKYDLDRLNELRQRLLAPLE 461 (1116)
T ss_pred CCCCCCCCCCHHHHHH------HHHH-----CCCCCHHHCCCCEECCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3555771200258998------8862-----478811115764002356--76820236777647778899999988789
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 98750110022102378899999999-----9997236763211145665777999999998664213766447788999
Q gi|254780823|r 533 PLVTYKTNKNSTCGNLSISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 (1040)
Q Consensus 533 ~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 607 (1040)
T Consensus 462 ~Lf~S~kq~g~~ll~k---k~~~FL~~~~l~~nl~~L~~~~s-~~E~Ek~~EVWK~ftd~L~~f~~iFgqekl~L~dFLA 537 (1116)
T TIGR02774 462 ELFKSRKQLGEKLLNK---KFLLFLKEIALAENLQKLATTKS-EVEQEKEEEVWKTFTDILEQFATIFGQEKLKLDDFLA 537 (1116)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9998788778888754---66655200420689998752245-6544665316678999999987875336434999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CHHHHHHH---
Q ss_conf 99986224433566778773798034333566586378528631134566666764896788564899-96678889---
Q gi|254780823|r 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-TAEKYIGQ--- 683 (1040)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~-~~e~~~~~--- 683 (1040)
T Consensus 538 LL~sGM~~s~YR~vPATvDvVtvksYdLv~Pht~~FVYAlGLTq~~fPki~~n~SLltD~eR~~lN~rlaa~~~~ghfdi 617 (1116)
T TIGR02774 538 LLKSGMKASQYRTVPATVDVVTVKSYDLVEPHTKPFVYALGLTQSNFPKISQNSSLLTDEERQALNDRLAATEEDGHFDI 617 (1116)
T ss_pred HHHHHHHCCCCCCCCEEEEEEEEEECHHCCCCCCCCCEEECCCHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEC
T ss_conf 99963311466310116547876201202766555212222441026603413677787999976025400246751303
Q ss_pred ------HHHHHHHH--H--CCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCC--------------------
Q ss_conf ------99999998--5--59859999204677766566537888773147310000113--------------------
Q gi|254780823|r 684 ------AAHDFEMA--N--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-------------------- 733 (1040)
Q Consensus 684 ------~~~~~~~~--~--~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~-------------------- 733 (1040)
T Consensus 618 ~~~EN~KKNh~a~LSL~NsA~k~LvLS~p~l~NE~ed~~SpYL~eL~~~G~p~~~K~~~~~~~~~~d~G~YkaLLS~vv~ 697 (1116)
T TIGR02774 618 ASQENLKKNHYAALSLFNSATKELVLSAPQLFNESEDKLSPYLQELIDFGVPLLEKGKNSLEEDKEDIGNYKALLSRVVA 697 (1116)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 33324315689999998876554552023341478000365789999758862121024410220024226899999999
Q ss_pred -------------CCCCHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCHHHHHHCCHHHH
Q ss_conf -------------6532234787521012343454755---------------676300124677800457764283688
Q gi|254780823|r 734 -------------RGQCYLDWTRKLDYTTKQPHYKRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAV 785 (1040)
Q Consensus 734 -------------~~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~lS~S~l~~~~~cP~~~ 785 (1040)
T Consensus 698 ~~~~~~~~~~t~~~~tFw~V~~R~LRkkL~~q~le~P~i~~~L~~~tls~dvl~~~yP~~~pL~LSaSaLT~FYnNqY~Y 777 (1116)
T TIGR02774 698 LNRQAEDKEMTKQDKTFWSVLVRYLRKKLDQQGLEIPTITDSLSTKTLSKDVLEVLYPEDQPLKLSASALTTFYNNQYKY 777 (1116)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 85024652356123333467655766653230665765589888433047789864678796422011321355355789
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHH
Q ss_conf 897632888887212489988998999999999986125898347899999999999-----653279866999999999
Q gi|254780823|r 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-----FEKENLPPHIDIIWRHLF 860 (1040)
Q Consensus 786 ~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 860 (1040)
T Consensus 778 FL~YVL~L~e~~siH--PD~R~HG~YLHrvFEr~m~~~e~--~e~Fd~~L~qaI~~t~QE~~F~~~Y~~~~Ea~yt~~iL 853 (1116)
T TIGR02774 778 FLKYVLGLEEEESIH--PDARHHGNYLHRVFERLMKDQEG--EESFDEKLNQAINETSQEEVFKALYQEDAEARYTLEIL 853 (1116)
T ss_pred HHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 998740644223578--88441343367999998416788--96178899998520265889998604364478869999
Q ss_pred HHHHHHHH------------HHHH-HC---CCCCE--E---EEEEEE--EEEEECC--CCEEEEEEEEEEEECCCC-CEE
Q ss_conf 99999999------------9997-32---46885--9---999965--6889788--237999999788887998-589
Q gi|254780823|r 861 HKISHSFL------------EHEE-KI---QSSIE--K---IFVNIP--AKMAIES--IGIHLTGFADRIDLLKSG-FVD 914 (1040)
Q Consensus 861 ~~~~~~~l------------~~~~-~~---~~~~~--~---~~~E~~--~~~~i~~--~~~~l~GrIDRid~~~dG-~~~ 914 (1040)
T Consensus 854 ~Diar~TA~ILr~n~~i~v~~~e~~qhylGdkdWqktPqalka~~~~~~~~L~~~nh~R~~~v~G~iDRiDrLs~~~sLG 933 (1116)
T TIGR02774 854 LDIARSTAPILRDNSAIQVIKEEEAQHYLGDKDWQKTPQALKALEGKDNFQLQIDNHGREIKVRGIIDRIDRLSDGDSLG 933 (1116)
T ss_pred HHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECEEECCCCCCEE
T ss_conf 99886122220258522047787642102540110005788860676205652056544789811660002205788214
Q ss_pred EEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 9972685346-887984230121699999998288677785574213888606866
Q gi|254780823|r 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 (1040)
Q Consensus 915 IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 969 (1040)
T Consensus 934 vVDYKSS~~~F~~~~FYNGL~pQL~TYl~ALk~~~p~e~~-~~~FGAmYLhmqeP~ 988 (1116)
T TIGR02774 934 VVDYKSSAKKFDIAKFYNGLSPQLLTYLAALKRDKPSEIE-APIFGAMYLHMQEPK 988 (1116)
T ss_pred EEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHCCCC
T ss_conf 5660467652364110478762479999998430444467-875520212314854