>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..

Probab=100.00 E-value=1.6e-34 Score=242.79 Aligned_cols=724 Identities=15% Similarity=0.116 Sum_probs=379.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-------------HHCCCCCEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 999999999999753248889899999999874434-------------4227688099983456616799999998614 Q gi|254780823|r 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-------------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 (1040) Q Consensus 186 ~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-------------~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~ 252 (1040) T Consensus 359 ~~~~~f~~~f~~~KR~kn~~DF~DlEH~~L~IL~~~~~~GE~~~s~~~~~YrekF~EvlVDEYQDtN~~QE~IL~~~~~g 438 (1295) T TIGR02785 359 QLVKDFIEAFGAEKREKNVLDFSDLEHYALQILSNENESGERKPSEAAEFYREKFKEVLVDEYQDTNLVQESILQLLKRG 438 (1295) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC T ss_conf 99999999999976537886402768999997235888874227999999864485467514346127999999983486 Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH---------------------HHHHHHHHHC--CCCHH Q ss_conf -89689982486321078886433420123333344467636---------------------8999999762--99966 Q gi|254780823|r 253 -PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ---------------------YSLAKLLDFL--DIKRE 308 (1040) Q Consensus 253 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~l--~~~~~ 308 (1040) T Consensus 439 ~~~~gNlFMVGDVKQSIY~FRqAdP~LFl~KY~~f~~eg~~~G~rI~L~~NFRSr~eVl~~TN~~F~~lMd~~vGeIdYD 518 (1295) T TIGR02785 439 EEEEGNLFMVGDVKQSIYRFRQADPSLFLEKYKRFAQEGNEHGKRIDLAENFRSRKEVLDATNYLFKQLMDEEVGEIDYD 518 (1295) T ss_pred CCCCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 24777744434442043631025713578750121466667884400321478742155565389999728888865567 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH--- Q ss_conf 60257766645367777544420111-22100000012356765321337815995599899999999999998642--- Q gi|254780823|r 309 DVKRLGNVSNEMYGRSMVISKSFLPP-DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--- 384 (1040) Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~--- 384 (1040) T Consensus 519 ~~a~L~-----------~G~~~Y~~~~~~~~~~~~~~~~~~~~~e~~~~d~~e~~i~d~~~~E~~~~~~~Ik~li~~~~~ 587 (1295) T TIGR02785 519 EEAQLK-----------FGAAKYPENPDKKTELLLYEKLAIEEEEEEEIDEEELEILDKAQQEATVVAERIKALIKEGFK 587 (1295) T ss_pred HHHHHC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 245722-----------687677887750245688887754311334577655301045155678899999999746862 Q ss_pred ------------CCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCC-CCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf ------------2984999802641-1357888435513777665-6900352889899999999983799978999986 Q gi|254780823|r 385 ------------NKKKSALITADRN-LARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 (1040) Q Consensus 385 ------------~~~~~avv~~d~~-~~~~v~~~L~~~gipv~~s-~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL 450 (1040) T Consensus 588 vYD~~~g~~R~~~Y~DIviL~rs~~k~n~~I~~~f~~~~IPV~~nG~~~nYFq~~Ev~~ml~~L~vIDNP~QDIPLvaVL 667 (1295) T TIGR02785 588 VYDKKTGEYRPVKYRDIVILTRSRGKWNLQIMEEFKKYGIPVFVNGDAENYFQTTEVRVMLSLLRVIDNPYQDIPLVAVL 667 (1295) T ss_pred CHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 00321386266025567886789864337999999848998797277656078899999998731216854027889987 Q ss_pred CCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 2965456679389999999-732232104557778111788875220114444345520101553432579999999899 Q gi|254780823|r 451 KHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 (1040) Q Consensus 451 ~sPl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 529 (1040) T Consensus 668 RSPIvgf~E~ELa~iRl~~~k~~~~--------------Y~a~~~y~~~~~~~~~----------qkt~~~~~L~~K~~~ 723 (1295) T TIGR02785 668 RSPIVGFDEEELALIRLQNAKDSSF--------------YEAVKSYVKAEKLASS----------QKTLIEDELYEKLKR 723 (1295) T ss_pred HCCCCCCCHHHHHHHHHCCCCCCHH--------------HHHHHHHHHCCCCCCC----------CCCCHHHHHHHHHHH T ss_conf 3446788888899984316666407--------------9999999602788843----------355204489999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH Q ss_conf 999987501100221023788999999999---99723676321114566577799999999866421376644778899 Q gi|254780823|r 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVT---CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 (1040) Q Consensus 530 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 606 (1040) T Consensus 724 F~~~L~~w----R~~a~~~~~~~LIW~iY~~t~y~dYVGGLP~Gk----qRQANL~aLy~RA~~YE---~tsFkGLFqF~ 792 (1295) T TIGR02785 724 FLDSLQKW----REFARTHSISELIWKIYEDTGYLDYVGGLPNGK----QRQANLYALYERARQYE---KTSFKGLFQFI 792 (1295) T ss_pred HHHHHHHH----HHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCH----HHHHHHHHHHHHHHHHH---CCCCCHHHHHH T ss_conf 99999999----998742785789999985325100012688846----67888999999999985---12574067889 Q ss_pred HHHHHHHCCC----CCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCC----CCCCCCCCC--CCHHHHH------ Q ss_conf 9999862244----33566778773798034333566586378528631134----566666764--8967885------ Q gi|254780823|r 607 DIITRLIDGE----TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW----PKNTAKNPF--LSRVMQS------ 670 (1040) Q Consensus 607 ~~l~~~~~~~----~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~----P~~~~~~~~--l~~~~r~------ 670 (1040) T Consensus 793 RFI~r~~e~~~Dla~a~~~~e~~naVR~MTIH~SKGLEFPvVFv~gl~k~FN~~DL~~~~ll~~~~G~G~~y~dkmetGa 872 (1295) T TIGR02785 793 RFIERMQERQKDLAEAVAVGEAENAVRLMTIHKSKGLEFPVVFVLGLGKQFNKQDLNESYLLNRQLGLGIKYIDKMETGA 872 (1295) T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC T ss_conf 99999830230115642468876726510020766543667897158823301112014111345675178887641265 Q ss_pred ---------HCCCCC-----------HHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCC-----------HHHHH Q ss_conf ---------648999-----------66788899999999855985-99992046777665665-----------37888 Q gi|254780823|r 671 ---------DLNLKT-----------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS-----------RWLQR 718 (1040) Q Consensus 671 ---------~l~l~~-----------~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps-----------~~l~~ 718 (1040) T Consensus 873 veDhYP~~~r~~ypsL~~~a~k~~~~~~llsEEMRvLYVALTRAk~KLiLVG~~kD~~~~~~kW~~~~~~~~~~L~~~~R 952 (1295) T TIGR02785 873 VEDHYPPEERLSYPSLPKVAIKQKMKRELLSEEMRVLYVALTRAKEKLILVGSVKDEKKEVKKWLKAKDVSDWVLPENDR 952 (1295) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 13578864321357689999999999987888889999998888865435520333888999999987413770631320 Q ss_pred HHHCC------CCCC----HHHCCCCCCCHH-----------------------------------HHHHHHHCCCCCC- Q ss_conf 77314------7310----000113653223-----------------------------------4787521012343- Q gi|254780823|r 719 LLVLG------GTDF----FDNLKKRGQCYL-----------------------------------DWTRKLDYTTKQP- 752 (1040) Q Consensus 719 l~~~~------~~~~----~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~- 752 (1040) T Consensus 953 l~a~ns~ldwiG~aL~rH~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~d~~~l~~~~~~~~~~~~~~~~E~~~~~~~~~~ 1032 (1295) T TIGR02785 953 LQARNSYLDWIGPALARHRDLKLLLDDALVSIVDELTKDPSKFAVEVIDEDQLLAEEEEEKVDEKSEQLEALADKNQSDT 1032 (1295) T ss_pred HHEECCCCCCCCCHHEECCCHHHCCCCCCCCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCH T ss_conf 01011542020201011365442021011576022067753048898766021102456530340568899986314775 Q ss_pred ----------CCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC----------------------CCCCCC Q ss_conf ----------454755676300124677800457764283688897632888----------------------887212 Q gi|254780823|r 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD----------------------FIPHFK 800 (1040) Q Consensus 753 ----------~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~----------------------~~~~~~ 800 (1040) T Consensus 1033 ~~~~~~~~~~~L~~~YP~~~at~~~a~QSVSEIKR~~~DPd~~~~~kie~~e~~~~~~~~~~~~R~~~~~~~~P~Fl~k~ 1112 (1295) T TIGR02785 1033 DKEFREKVRERLSYDYPFKAATETPAKQSVSEIKRIFEDPDEELINKIEEAEDEGSERASVKQSRGLKISLEKPKFLTKT 1112 (1295) T ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC T ss_conf 58999999997502053134415466555223213478787155411320476411112221002210010687423103 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 48998899899999999998612589834789999999999965327986699-99999999999999999973246885 Q gi|254780823|r 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIE 879 (1040) Q Consensus 801 ~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 879 (1040) T Consensus 1113 k~~~~AEiGtAtH~vmQ~~DL~ek~~s~~~~~~~i~~lv----~~~~l~~~~~~~i~---~d~I~~Ffdt~LG~~~l~a~ 1185 (1295) T TIGR02785 1113 KGLTAAEIGTATHLVMQHLDLSEKDLSEEELQAQIERLV----KKELLTEEVAEKIN---IDKIVAFFDTALGKQILKAK 1185 (1295) T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCCCHHHHHHHH---HHHHHHHHCCHHHHHHHHCC T ss_conf 689863268899999963676788655899999999998----75216988874442---63233541257899998487 Q ss_pred EEEEEEEEEEEE------------CC-CCEEEEEEEEEEEECCCCCEEEEECCCCCCC---------CHHHHHCCCCCCH Q ss_conf 999996568897------------88-2379999997888879985899972685346---------8879842301216 Q gi|254780823|r 880 KIFVNIPAKMAI------------ES-IGIHLTGFADRIDLLKSGFVDITDYKTGDNP---------KKETAQKLIDPQL 937 (1040) Q Consensus 880 ~~~~E~~~~~~i------------~~-~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p---------~~~~~~~~~~~QL 937 (1040) T Consensus 1186 ~~~~r~~f~~~L~~~~~~~d~~~~~~e~~~lv~GiIDgy~e~ed~-~~L~DYKTD~v~gkf~~~~~~~~~~lk~rY~~Q~ 1264 (1295) T TIGR02785 1186 EVLRREPFFSMLISAEIYFDDLDEADEEKILVQGIIDGYLESEDG-LVLFDYKTDHVEGKFGSSFEGAINELKERYRGQL 1264 (1295) T ss_pred CCCEECCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCC-EEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 862434763134588961247774356607887412222333685-7898721333426678874331247888889999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECCC Q ss_conf 9999999828867778557421388860686 Q gi|254780823|r 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 (1040) Q Consensus 938 ~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 968 (1040) T Consensus 1265 ~LY~~AL~~-----~~~~kV~~~yLyll~~~ 1290 (1295) T TIGR02785 1265 KLYEKALEE-----ILKKKVKEKYLYLLDGD 1290 (1295) T ss_pred HHHHHHHHH-----HHCCCCCEEEEEECCCC T ss_conf 999999999-----83899723367880886

HHsearch alignment for GI: 254780823 and conserved domain: TIGR02785