Query gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1040
No_of_seqs 295 out of 1249
Neff 10.5
Searched_HMMs 39220
Date Sun May 29 21:02:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780823.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02786 addB_alphas double-s 100.0 0 0 1259.8 82.4 1028 7-1034 1-1096(1096)
2 TIGR03623 probable DNA repair 100.0 0 0 584.1 76.7 824 47-1030 2-874 (874)
3 COG3893 Inactivated superfamil 100.0 0 0 556.0 46.1 693 6-755 1-695 (697)
4 TIGR02773 addB_Gpos ATP-depend 100.0 0 0 441.7 60.5 878 109-1035 93-1166(1192)
5 COG3857 AddB ATP-dependent nuc 100.0 0 0 378.8 66.6 902 46-1032 31-1079(1108)
6 TIGR02784 addA_alphas double-s 100.0 0 0 375.7 42.1 720 182-962 344-1180(1190)
7 PRK11069 recC exonuclease V su 100.0 8E-39 2E-43 271.1 73.7 905 9-1006 2-1032(1122)
8 TIGR02774 rexB_recomb ATP-depe 100.0 3.9E-44 0 305.9 44.9 770 144-969 109-988 (1116)
9 pfam04257 Exonuc_V_gamma Exode 100.0 2.8E-37 7.2E-42 260.9 73.1 906 9-1006 2-995 (1008)
10 PRK10876 recB exonuclease V su 100.0 3.7E-37 9.5E-42 260.1 55.3 255 189-464 333-630 (1181)
11 PRK11773 uvrD DNA-dependent he 100.0 2.9E-38 7.5E-43 267.4 42.4 597 4-720 22-637 (722)
12 COG1074 RecB ATP-dependent exo 100.0 4.4E-39 1.1E-43 272.8 34.5 282 184-466 330-635 (1139)
13 PRK10919 ATP-dependent DNA hel 100.0 7.3E-36 1.9E-40 251.7 44.9 601 4-721 15-635 (672)
14 PRK13909 putative recombinatio 100.0 6.6E-33 1.7E-37 232.3 53.8 226 186-439 277-519 (911)
15 TIGR02785 addA_Gpos recombinat 100.0 1.6E-34 4.2E-39 242.8 39.4 724 186-968 359-1290(1295)
16 COG1330 RecC Exonuclease V gam 100.0 5.2E-30 1.3E-34 213.3 57.6 870 9-944 2-950 (1078)
17 TIGR01073 pcrA ATP-dependent D 100.0 6.6E-35 1.7E-39 245.4 31.1 583 38-723 46-707 (811)
18 TIGR01075 uvrD DNA helicase II 100.0 1.7E-35 4.4E-40 249.2 26.4 570 37-721 45-651 (741)
19 TIGR01074 rep ATP-dependent DN 100.0 3.1E-34 8E-39 240.9 27.1 574 37-721 44-641 (677)
20 pfam00580 UvrD-helicase UvrD/R 100.0 5E-28 1.3E-32 200.2 33.2 406 4-467 13-430 (494)
21 COG2887 RecB family exonucleas 100.0 9.5E-31 2.4E-35 218.1 17.7 262 770-1036 1-265 (269)
22 COG0210 UvrD Superfamily I DNA 100.0 2.7E-25 6.9E-30 182.3 40.5 606 6-722 17-641 (655)
23 TIGR00609 recB exodeoxyribonuc 100.0 7.6E-26 1.9E-30 185.9 37.0 731 186-970 376-1294(1324)
24 PRK11054 helD DNA helicase IV; 99.9 6.1E-20 1.5E-24 147.2 33.9 243 38-287 238-491 (684)
25 pfam10926 DUF2800 Protein of u 99.3 2.9E-10 7.5E-15 83.7 15.0 217 769-1029 3-225 (363)
26 TIGR01450 recC exodeoxyribonuc 99.2 2.7E-07 7E-12 64.2 53.0 742 37-799 27-946 (1207)
27 TIGR00372 cas4 CRISPR-associat 98.6 1.3E-06 3.3E-11 59.8 12.2 194 770-1028 1-204 (206)
28 KOG1805 consensus 98.5 2.1E-05 5.3E-10 51.9 15.0 10 982-991 1026-1035(1100)
29 pfam06023 DUF911 Archaeal prot 98.4 8.9E-05 2.3E-09 47.7 16.5 226 768-1028 43-288 (290)
30 pfam09810 Morph_protein1 Defec 98.2 7.5E-05 1.9E-09 48.2 13.5 145 767-946 11-175 (329)
31 pfam01930 Cas_Cas4 Domain of u 98.1 5.2E-05 1.3E-09 49.3 10.3 106 899-1028 54-160 (162)
32 TIGR03491 RecB family nuclease 97.9 0.0014 3.6E-08 39.8 17.5 13 384-396 138-150 (457)
33 PHA00619 CRISPR-associated Cas 97.6 0.0046 1.2E-07 36.5 13.8 111 894-1028 94-206 (210)
34 COG4343 CRISPR-associated prot 97.3 0.01 2.6E-07 34.3 19.3 226 768-1028 42-279 (281)
35 TIGR01896 cas_AF1879 CRISPR-as 97.1 0.014 3.5E-07 33.4 11.2 230 768-1028 34-294 (295)
36 PHA01622 CRISPR-associated Cas 97.1 0.0028 7.1E-08 37.9 7.6 128 881-1028 69-199 (204)
37 pfam08696 Dna2 DNA replication 96.5 0.021 5.4E-07 32.1 8.2 69 767-841 57-125 (209)
38 COG1468 CRISPR-associated prot 95.9 0.097 2.5E-06 27.8 12.1 174 768-1029 14-187 (190)
39 PRK09709 exonuclease VIII; Rev 95.9 0.098 2.5E-06 27.8 11.8 224 765-1007 620-860 (877)
40 KOG2108 consensus 89.1 0.33 8.4E-06 24.3 2.7 211 227-463 230-443 (853)
41 COG3972 Superfamily I DNA and 82.4 2.4 6.2E-05 18.6 9.5 28 626-653 522-549 (660)
42 TIGR02153 gatD_arch glutamyl-t 59.9 4.6 0.00012 16.8 1.4 119 149-274 94-228 (413)
43 pfam06250 DUF1016 Protein of u 58.9 8.4 0.00021 15.1 8.2 63 873-947 201-264 (320)
44 TIGR01447 recD exodeoxyribonuc 51.1 9.7 0.00025 14.7 1.8 50 623-698 676-725 (753)
45 KOG0649 consensus 41.4 16 0.0004 13.3 1.7 17 908-924 175-191 (325)
46 TIGR01389 recQ ATP-dependent D 39.4 17 0.00043 13.1 2.4 32 231-262 7-38 (607)
47 COG5321 Uncharacterized protei 37.9 18 0.00045 13.0 2.4 22 901-922 50-71 (164)
48 TIGR02918 TIGR02918 conserved 37.2 18 0.00046 12.9 1.4 14 989-1002 462-475 (511)
49 COG1637 Predicted nuclease of 35.3 20 0.0005 12.7 5.6 56 875-946 146-201 (253)
50 KOG3914 consensus 34.7 20 0.0005 12.7 1.3 16 909-924 213-228 (390)
51 TIGR01679 bact_FAD_ox FAD-link 31.0 22 0.00056 12.3 1.0 20 397-416 153-172 (426)
52 COG3046 Uncharacterized protei 27.7 16 0.0004 13.3 -0.2 17 418-434 222-238 (505)
53 TIGR01591 Fdh-alpha formate de 27.6 26 0.00066 11.9 2.1 51 361-411 167-217 (694)
54 TIGR00705 SppA_67K signal pept 25.8 28 0.00072 11.6 3.8 47 372-419 345-401 (614)
55 PRK10875 recD exonuclease V su 25.4 29 0.00073 11.6 2.1 25 623-647 526-550 (607)
56 pfam06319 DUF1052 Protein of u 24.9 29 0.00074 11.5 3.3 23 901-923 50-72 (158)
57 pfam06862 DUF1253 Protein of u 24.8 29 0.00075 11.5 3.3 34 33-69 27-60 (435)
58 COG1435 Tdk Thymidine kinase [ 23.4 31 0.00079 11.4 4.9 49 227-275 83-131 (201)
59 pfam09481 CRISPR_Cse1 CRISPR-a 22.3 33 0.00083 11.2 5.6 55 401-455 21-75 (475)
60 COG0676 Uncharacterized enzyme 22.0 33 0.00084 11.2 2.1 24 895-918 193-216 (287)
61 pfam01939 DUF91 Protein of unk 21.5 34 0.00086 11.1 5.5 56 875-946 121-176 (228)
62 smart00426 TEA TEA domain. 20.7 32 0.00082 11.3 0.3 19 915-933 44-65 (68)
63 KOG0322 consensus 20.4 36 0.00091 11.0 2.8 28 895-924 256-286 (323)
No 1
>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..
Probab=100.00 E-value=0 Score=1259.82 Aligned_cols=1028 Identities=37% Similarity=0.639 Sum_probs=959.4
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCC--CEECCEEEEHHHH
Q ss_conf 48983898893799999997112101123678981332220676279689999999998511888--6514033125776
Q gi|254780823|r 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIKSLGDV 84 (1040)
Q Consensus 7 ~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~--~~~~P~i~t~~~~ 84 (1040)
||||||||.|||++||++|+++.++++|++.+.+|..|++++|||||||++|.||+.|.+..+++ +++||+|.++||+
T Consensus 1 RvfsIp~g~pFl~~la~~Ll~gRL~~gf~~~~~dP~~LA~~tiyvPTRRa~Ralr~~F~~~~~g~~~a~lLPrI~plGD~ 80 (1096)
T TIGR02786 1 RVFSIPPGRPFLDALAEGLLKGRLVAGFEADGDDPLALADATIYVPTRRAARALREAFVDVLDGRSSAALLPRIRPLGDV 80 (1096)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC
T ss_conf 92650688981689999997035667778887631107880686177068999999998625873230221411114764
Q ss_pred HHHHHHCC-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 56554045-------43346778888818999999999999986310000001223211135697889998999999999
Q gi|254780823|r 85 VEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 (1040)
Q Consensus 85 ~~~~~~~~-------~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d 157 (1040)
+++..... .....++||+|++.+|+++|++||..|.+.+.++...++.......+..++++++||..|+++||
T Consensus 81 DeD~~~F~~~~~~~~~~~~~~LpPai~~~eR~l~LarLi~~~~~~~p~h~r~lfg~~~~~~~~~~a~a~~LA~~La~l~D 160 (1096)
T TIGR02786 81 DEDEALFAAEDEVDSGAAILDLPPAISPLERLLELARLIRAWRDKLPDHVRALFGVEDVLVPAGPADAIWLARDLADLMD 160 (1096)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 65302030036678886666578788535789999999999862466899998346776357876559999999999888
Q ss_pred HHHHCCCCHH-HHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HCCCCCEEEEEEC
Q ss_conf 9997599978-9874002202079999999999999999997532488898999999998744344-2276880999834
Q gi|254780823|r 158 IIETEEKKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGS 235 (1040)
Q Consensus 158 ~~~~~~~~~~-~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-~~~~~~~i~v~g~ 235 (1040)
+|+.+|++|+ .|..|...+.+.|||.+++||.++...|...|.+.|..++.+++.++++..++.+ ..+|.+||+.+|+
T Consensus 161 ~~et~g~~w~~~L~~L~~~~la~hWQ~tl~FL~Iv~~~WP~~L~E~~rs~p~arR~~lL~a~a~~w~~~PP~~PviaAGs 240 (1096)
T TIGR02786 161 EMETEGVDWSEKLDDLAEDDLARHWQVTLKFLEIVTRAWPKRLAELGRSNPAARRNRLLRALAARWATNPPEGPVIAAGS 240 (1096)
T ss_pred HHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 86258889897513458342458999999999999986011344524755888999999999999985789975888742
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233-33344467636899999976299966602577
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 314 (1040)
+++.|++..||++|+++|+|+||+||.|.++.+..|+.++....... -......+||||.++.|+..+|+.+.++..|.
T Consensus 241 tGs~PAta~LL~vvA~LP~GaVVLPGLD~~l~e~~W~~L~~~~~~~~~f~~ps~~~HPQy~L~~LL~~~G~~R~eV~~~~ 320 (1096)
T TIGR02786 241 TGSIPATADLLAVVARLPQGAVVLPGLDLDLDEEAWQALGPAGTEEDTFIEPSVFGHPQYGLKRLLDRLGVSRKEVEEWG 320 (1096)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCC
T ss_conf 78878999999999836589387678888888899950566511024556677788857999999998488856763158
Q ss_pred -CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCC--CCC--CCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCC-E
Q ss_conf -666453677775444201112210000001235--676--5321337815995599899999999999998642298-4
Q gi|254780823|r 315 -NVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN--KIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-K 388 (1040)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~~-~ 388 (1040)
........|...++++++|+..+..|......+ ... ....+..++++|+|.++++||.+||-.||++.+++++ +
T Consensus 321 ~~~~~~~~~R~~~~seaLrPA~~T~~W~~~~~~~d~~a~L~~~~~a~~~~s~iEA~~~reEA~AIAlaLR~A~ed~~~~t 400 (1096)
T TIGR02786 321 PDADRGLRKRERLVSEALRPAETTDAWGSQREQPDVEASLEDIAEAFANLSLIEAANEREEALAIALALREAVEDPGKKT 400 (1096)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 87676667899999985087246677521364667778840675102465030478874699999999999872248983
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99980264113578884355137776656900352889899999999983799978999986296545667938999999
Q gi|254780823|r 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 (1040)
Q Consensus 389 ~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~ 468 (1040)
+|+||||+.++++|...|.||||-.++|+|.||..||.+.+++.+++++.+|+|..+++++||||||++|......+...
T Consensus 401 AALVTPDR~LARRV~a~L~RFGi~aDDSaG~pL~~tp~a~llrl~~~~~~~pldPv~LLs~lKHPL~~lG~~r~~~~~a~ 480 (1096)
T TIGR02786 401 AALVTPDRALARRVAAELKRFGIEADDSAGRPLSQTPAAVLLRLLAEAVFAPLDPVALLSLLKHPLVRLGEERDDWRAAA 480 (1096)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 12113015589999987653486657767742333117899999999986678805699986305653378826899988
Q ss_pred HHHHHHHHCCCCC---CCCCCCHHHHHHHHCCCC--------CCCCCCCCHHHCCCCCC------HHHHHHHHHHHHHHH
Q ss_conf 9732232104557---778111788875220114--------44434552010155343------257999999989999
Q gi|254780823|r 469 NALELVALRGNKN---SYDIMDLKSLVLDRIATQ--------KNNTHVPHWQSRLSEED------KELAVLLVDHILQCI 531 (1040)
Q Consensus 469 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~l 531 (1040)
..+|...+|++.. ..+............... .+....+.|........ .+.+..+++.+..++
T Consensus 481 ~~LEL~~LRG~~~~~G~ag~~~~~~~~~~~~~a~DhGasaDa~d~~~~pa~~~~~~~~~~~~~~~~~~Ar~L~~~l~~a~ 560 (1096)
T TIGR02786 481 ELLELVALRGGTPAAGRAGILALPAFFERRLLALDHGASADAADDPEVPAWHSALPEQSQALAESIEAARALCEALEIAI 560 (1096)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 62215653486667785115658999877631122676666554531002432146312450224899999999999986
Q ss_pred HHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHH
Q ss_conf 998750110022----1023788999999999997236763211145665777999999998664213--7664477889
Q gi|254780823|r 532 TPLVTYKTNKNS----TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEW 605 (1040)
Q Consensus 532 ~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 605 (1040)
.++......... .....+++++...+....+.++.+.......+|....+..+..++....... ....+...+|
T Consensus 561 ~Pl~~~~~~~~~~~raftdklPl~e~a~~~~~~~e~l~~d~~~~l~~~~~~~~G~~la~~~~~l~~~~~~~~l~~~~~~~ 640 (1096)
T TIGR02786 561 EPLESLAGRREELDRAFTDKLPLAELAEATVELLEALSRDEEGWLAALYEGEAGHKLASLLAELLSSAADHGLDFDASDW 640 (1096)
T ss_pred HHHHHHHHCHHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 30899861102102033303788999999999999727898888677756778999999999863123354555465506
Q ss_pred HHHHHHHHCCCCCC-CCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999862244335-66778773798034333566586378528631134566666764896788564899966788899
Q gi|254780823|r 606 IDIITRLIDGETVK-PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 (1040)
Q Consensus 606 ~~~l~~~~~~~~~~-~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~ 684 (1040)
.+++..++....+. +...++++|+|+|.+|||.+.+|.||+.|+|||+||..+..|+||+..+|..+||+.+|++.+++
T Consensus 641 ~~~~~~L~~~~~VrG~~~~~hPRi~IwG~LEARLq~~D~~v~GGLNEGvWP~~~~~DPfLSR~Mr~~~GL~pPERRIGls 720 (1096)
T TIGR02786 641 PDVLQALVATEAVRGPRDGGHPRIFIWGALEARLQTADLLVIGGLNEGVWPPATRNDPFLSRPMRHELGLPPPERRIGLS 720 (1096)
T ss_pred HHHHHHHHCCCCEECCCCCCCCCEEEHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH
T ss_conf 89999851686155888888885120367888875422006700236788666677787880555631788723554101
Q ss_pred HHHHHH-HHCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCC-------CCCHHHCCCCCCCHHHHHHHHHCCCC-CCCCC
Q ss_conf 999999-8559859999204677766566537888773147-------31000011365322347875210123-43454
Q gi|254780823|r 685 AHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTK-QPHYK 755 (1040)
Q Consensus 685 ~~~~~~-~~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 755 (1040)
+|+|.+ ++++++|++|++.+.++.|+.||||+.||....+ .........++..+..|++.++++.. ..++.
T Consensus 721 AHDF~~ta~Ga~~vvLtra~R~~~APaVpSRWL~RL~a~~gGlPDqGG~~~~~~~r~~G~~~~~Wa~~LD~p~~G~~~~~ 800 (1096)
T TIGR02786 721 AHDFQQTALGAKEVVLTRAARSGGAPAVPSRWLQRLEALLGGLPDQGGADVLEELRRRGERLLHWARALDEPQDGVAPVK 800 (1096)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 77899997136503420000378699625689999999854687632589999877337078999998418878888788
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 75567630012467780045776428368889763288888721248998899899999999998612589834789999
Q gi|254780823|r 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 (1040)
Q Consensus 756 ~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l 835 (1040)
+|.|.|+...+|+.+|+|.++++.++||..|+++||++++++++..++++++|||++|.+||.|.+......+.+..+.|
T Consensus 801 rP~P~PP~~~RPr~~SVTeie~L~rDPYAiYAk~ILkL~pLdPl~~~p~AA~RG~liH~ile~f~~~~~~~~~~~a~~~L 880 (1096)
T TIGR02786 801 RPAPRPPVALRPRKLSVTEIETLRRDPYAIYAKHILKLRPLDPLDRDPEAADRGTLIHDILERFVEEVADPLPADAADVL 880 (1096)
T ss_pred CCCCCCCHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 52235786447881355320035688217787552167767776788324663229999999998751146732179999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--EEECC------CCEEEEEEEEEEEE
Q ss_conf 99999996532798669999999999999999999973246885999996568--89788------23799999978888
Q gi|254780823|r 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIES------IGIHLTGFADRIDL 907 (1040)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~--~~i~~------~~~~l~GrIDRid~ 907 (1040)
..+....|.+...++....+|+.|+++++.+|++||.+|+...+...+|.... +.+.. .+|+|+||.||||+
T Consensus 881 ~~~~~~~l~~~~~p~~~~a~W~pRf~~~A~~~~~wE~~Rr~~~~~~~~E~~~~~~~~~~~e~~~~~~g~tL~GrADRID~ 960 (1096)
T TIGR02786 881 RKIGRKELASLNLPPEAEALWWPRFARIADWFADWERARRLDVRRIFAEARGRKELVGERELRAAIRGFTLSGRADRIDR 960 (1096)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEECCEEEEEEEEEEEE
T ss_conf 99999986742478758886388999999999999987443432124630040257641344000145278778767763
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCC-CCCCCEEEEEECCCCCCCC-----CC---CCC
Q ss_conf 79985899972685346887984230121699999998288677785-5742138886068665543-----45---654
Q gi|254780823|r 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDC-----IT---NDK 978 (1040)
Q Consensus 908 ~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~-----~~---~~~ 978 (1040)
.+||.+.|+|||||++||.|++..+++|||.|.+.++++|||++++. ..++.+.||.+++.++.+. .. ..+
T Consensus 961 ~~~G~~~I~DYKTG~pPS~kQv~~gl~pQLaLEaAll~~GaF~D~~~~~~~~~L~y~~l~g~~~~~~~~i~~~~~~r~~~ 1040 (1096)
T TIGR02786 961 TADGSAAILDYKTGAPPSGKQVRAGLSPQLALEAALLMRGAFKDIGAVPTPAQLVYVRLGGNGPVKEESILSEKAKRGKK 1040 (1096)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCC
T ss_conf 69884798862468895289885036277999999998188857777776102366655588865520444305556877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55898889999999999999998488988555545101566898654420144310
Q gi|254780823|r 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 (1040)
Q Consensus 979 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~~ew~ 1034 (1040)
+..+.+++.++..++|.+||.+|.++++||+||.-+.++..+|+|||||+|+.|||
T Consensus 1041 ~~~~A~~l~~eA~~~L~~Li~~Y~~p~~gY~Sr~~p~~~~~~~GDYdhLARv~EWs 1096 (1096)
T TIGR02786 1041 EPKDAPDLAEEAWERLEKLIREYDDPDQGYTSRALPFKKKEYYGDYDHLARVDEWS 1096 (1096)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 87785899999999999999974488874164316222679998523414200379
No 2
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=100.00 E-value=0 Score=584.11 Aligned_cols=824 Identities=18% Similarity=0.197 Sum_probs=555.8
Q ss_pred EEEEECCHHHHHHHHHHHHH---HCCCCCEECCEEEEHHHHHHHHHHCCCCCC--CCCCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 06762796899999999985---118886514033125776565540454334--67788-8881899999999999998
Q gi|254780823|r 47 VTIYVPTKRAIQELRSEFIE---ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNP-PVSNIQRLLELARLILIWR 120 (1040)
Q Consensus 47 v~vl~ptrraa~~Lr~~l~~---~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~--~~~~~-~~~~~~r~~~l~~l~~~~~ 120 (1040)
.+||+||+|.++.|+..+++ ..|....-.|+|+|++.+............ .+.|. .+++....++..+++.
T Consensus 2 ~lvlT~n~RLar~l~~~~~~~q~~~g~~vw~tp~i~~~~~Wl~~~w~~~~~~~~~~~~p~~lL~~~qe~~lW~~iI~--- 78 (874)
T TIGR03623 2 ALVLTANNRLARTLRQEYARAQLAQGKKVWATPDILPWSQWLQRLWEEALLTGDAPELPHALLSSFQEQFLWEEVIA--- 78 (874)
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHH---
T ss_conf 47975667999999999999999769951468876249999999999998447755441443689999999999997---
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63100000012232111356978899989999999999997599978987400220207999999999999999999753
Q gi|254780823|r 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 (1040)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~ 200 (1040)
... ....+ .... ..|....+...-+..++++.+....-.. .....|+.. ...|.+.+.
T Consensus 79 ----~~~----~~~~L---l~~~---~~A~~A~~A~~l~~~w~i~~~~~~~~~~-------~e~~~Fl~W-~~~f~~~~~ 136 (874)
T TIGR03623 79 ----QSE----PGRAL---LDVK---GAARLAQEAWQLLHEWGLPPDAGEFSLT-------EETRLFLDW-RTAFEARCR 136 (874)
T ss_pred ----CCC----CCCCC---CCHH---HHHHHHHHHHHHHHHHCCCCCHHCCCCC-------HHHHHHHHH-HHHHHHHHH
T ss_conf ----277----66543---5969---9999999999999983899421002578-------668999999-999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 24888989999999987443442276880999834566167999999986148968998248632107888643342012
Q gi|254780823|r 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 (1040)
Q Consensus 201 ~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 280 (1040)
..++.|.......+......... ..+..|+++||.+++|.+..+++++.+. |+.+....+.
T Consensus 137 ~~~~i~~~~l~~~l~~~~~~~~~-~~p~~i~l~GFd~l~P~~~~Ll~~L~~~--g~~v~~~~~~---------------- 197 (874)
T TIGR03623 137 KEGWIDAAQLPEQLLDLLRQGGL-KLPKQIILAGFDELTPQQQALLAALEER--GVDVQQWLPE---------------- 197 (874)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEECCC----------------
T ss_conf 77985777899999999855788-9987289996797998999999999964--9757973665----------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCE
Q ss_conf 33333444676368999999762999666025776664536777754442011122100000012356765321337815
Q gi|254780823|r 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 (1040)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~ 360 (1040)
......+.
T Consensus 198 ------------------------------------------------------------------------~~~~~~~~ 205 (874)
T TIGR03623 198 ------------------------------------------------------------------------SEEQASPQ 205 (874)
T ss_pred ------------------------------------------------------------------------CCCCCCCC
T ss_conf ------------------------------------------------------------------------35667552
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHH-HHHHHHHH-------------CCCCCCCCCCHHHHCH
Q ss_conf 9955998999999999999986422-9849998026411357-88843551-------------3777665690035288
Q gi|254780823|r 361 LIEADNEREEAISIAIALRMSLDEN-KKKSALITADRNLARR-VKLELTRF-------------GINIDISAGIPLSTTL 425 (1040)
Q Consensus 361 ~~~a~~~~~Ea~~ia~~lr~~~~~~-~~~~avv~~d~~~~~~-v~~~L~~~-------------gipv~~s~g~pL~~~p 425 (1040)
.+.+.+..+|...+|.|.++.++.. ...++||+|+....+. +.+.|.+. ..|||+|.|.||.++|
T Consensus 206 ~~~~~d~e~Ei~aaA~Wa~~~l~~~p~~rigIVvp~L~~~r~~L~~~l~~~l~P~~~~~~~~~~~~~~NiSlG~pL~~~P 285 (874)
T TIGR03623 206 RLACADPEDEIRAAARWARQQLEQNPAARIGVVVPNLEELRSQLARILDDVLHPQALLPTSADAPRPFNISLGRPLAEEP 285 (874)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCH
T ss_conf 21369979999999999999862288863899778779899999999998728200277654456640223788642178
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 98999999999837999789999862965456679389999999732232104557778111788875220114444345
Q gi|254780823|r 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 (1040)
Q Consensus 426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1040)
+++..+.++++..++.+...+.+||+||++..+..+...+..... .......... .+..+...... ...
T Consensus 286 li~~AL~lL~l~~~~~~~~~~~~lL~SPy~~~~~~e~~~ra~ld~---~lr~~~~~~~---~l~~ll~~~~~-~~~---- 354 (874)
T TIGR03623 286 LVHTALLLLELAQGKLEPEEASALLRSPYIAGAEVEALARAQLDA---RLRRLAEASV---TLAQLLKRAGA-ENK---- 354 (874)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHH---HHHHHCCCCC---CHHHHHHHHHC-CCC----
T ss_conf 999999999850378789999999829975345420458999999---9997187767---89999987430-366----
Q ss_pred CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 52010155343257999999989999998750110022102378899999999999723676321114566577799999
Q gi|254780823|r 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 (1040)
Q Consensus 506 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (1040)
.........+..... .... ...........|...+...++..++++.......+++.. ..+.
T Consensus 355 --------~~~~~~l~~~l~~~~-------~~~~--~~~~~~~~~s~W~~~f~~~L~~~gwPg~~~L~S~EyQ~~-~~~~ 416 (874)
T TIGR03623 355 --------LYLCPLLAELLSNAM-------AFLQ--KPSSTKLLPSEWAARFQRWLKALGWPGDRALDSEEYQAV-KAWK 416 (874)
T ss_pred --------CCCCHHHHHHHHHHH-------HHHH--HCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHH
T ss_conf --------546879999999999-------9997--314356898999999999998637975566782999999-9999
Q ss_pred HHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99986642-13766447788999999862244335667787737980343335665863785286311345666667648
Q gi|254780823|r 586 SLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 (1040)
Q Consensus 586 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l 664 (1040)
..++.+.. ......++..++...+...+....+.+.. ....|||||++|++|+.||.+||+||||++||.....++|+
T Consensus 417 ~~L~~la~Ld~~~~~~~~~eal~~L~~~l~~~~fqp~~-~~~~iQVmG~LEa~gl~Fd~lwvlg~~e~~~P~~~~~~pfi 495 (874)
T TIGR03623 417 ELLAEFAALDRVSPLLTFSEALRLLRQLAAETLFQPET-PEAPIQVLGLLEAAGLQFDALWVMGLTDEVWPAPPRPNPFL 495 (874)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999986301244578999999999998525789989-99972684124435797571788358877789999999988
Q ss_pred CHHHHHHCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCCCHHHH
Q ss_conf 96788564899--9667888999999998-55985999920467776656653788877314731000011365322347
Q gi|254780823|r 665 SRVMQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 (1040)
Q Consensus 665 ~~~~r~~l~l~--~~e~~~~~~~~~~~~~-~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 741 (1040)
|..+++.+|+| +.++...+++++++++ .++.++++||+..+++.+..||+++..+.......... ..+...
T Consensus 496 P~~lqr~~~~p~~~~~~~~~~a~~~~~rl~~~A~~v~~Sy~~~~~~~~~~pSpLi~~~~~~~~~~~~~------~~~~~~ 569 (874)
T TIGR03623 496 PLALQRAVGMPHASAERELDYARQVTQRLLRSAPEVVFSYPQRDGDRELRPSPLIAHLPLKAEEDAEL------ADYQDL 569 (874)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHCC------CCCCCC
T ss_conf 99999972999999999999999999999841894899834888985357676543156311333136------665552
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87521012343454755676300124677800457764283688897632888887212489988998999999999986
Q gi|254780823|r 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 (1040)
Q Consensus 742 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~ 821 (1040)
...................+.......+.++|.|++|+.|||+||++|+|++++++++..+++++++||++|++||.||+
T Consensus 570 ~~~~~~~~~~e~~~d~~a~~~~~~~~~~gg~s~L~~qa~CPf~~f~~~rL~~~~~~~~~~gl~~~~rG~i~H~~Le~~~~ 649 (874)
T TIGR03623 570 ADAVAAGRRLEVLDDAQAPPLEAGERISGGTGLLKAQAACPFRAFAQHRLGARALEEPVDGLDALERGTLVHRVLELFWE 649 (874)
T ss_pred HHHHHHHCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 45553001414510256766665343567289999887092999999984998889866677977765999999999999
Q ss_pred HCCCCCC------HHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf 1258983------478999999999996532------7986699999999999999999999732468859999965688
Q gi|254780823|r 822 KRINKNT------PEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 (1040)
Q Consensus 822 ~~~~~~~------~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~ 889 (1040)
.+.+... .+....+.+.+.+.+... ........++..|+.+++..|+..|..+. .|+.+..|.++++
T Consensus 650 ~l~~~~~L~~l~~~~l~~~i~~a~~~~l~~~~~~~~~~~~~~~~~le~~rl~~~l~~~L~~e~~r~-pF~v~~~E~~~~~ 728 (874)
T TIGR03623 650 RLKNQAALNALDEAELEQLIAEAIGEALAEEEARHSQTFPERFLELEQERLLQLLLEWLELERQRP-PFEVVATEQNHSI 728 (874)
T ss_pred HHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCEE
T ss_conf 825736454189999999999999999999876434345489999999999999999999755679-9138872156415
Q ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHC----CCCCCCCCCCCCEEEEE
Q ss_conf 97882379999997888879985899972685346-88798423012169999999828----86777855742138886
Q gi|254780823|r 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIR 964 (1040)
Q Consensus 890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~----~~~~~~~~~~~~~~y~~ 964 (1040)
.++ +++|+|||||||+.+||+.+|||||||+++ +.+..++..+||||+|+++.... +|..+.. +...|.+
T Consensus 729 ~~~--~l~l~~riDRiD~~~dG~~~IiDYKTG~~~~~~~~~~r~~~pQLplYa~~~~~~v~~i~~a~v~~---~~~~~~g 803 (874)
T TIGR03623 729 EIG--GLELKVRIDRIDRLADGRRLIIDYKTGAPSVRDWLGERPVEPQLPLYALLAEDEVAGVAFAQVRA---GKMKFSG 803 (874)
T ss_pred EEC--CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCC---CCCCCEE
T ss_conf 675--78997687443016999889998279999850222178444548999987158755102164315---7764100
Q ss_pred ECCCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 068665543-------456545589888999999999999999848898855554510156689865442014
Q gi|254780823|r 965 LKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 (1040)
Q Consensus 965 l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~ 1030 (1040)
+..+....+ ........+|+++..+|++.|.+++.+|.+|..+|.+.. ..+.|.||||+.|||+
T Consensus 804 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~w~~~L~~la~e~~~G~a~v~p~~--~~~~C~yCd~~~lCRi 874 (874)
T TIGR03623 804 LAEDKELIPGVKAFAKLKAEDEPDSWEEVLARWRQELTALAEEFSAGYAAVDPKN--SETDCRYCDLQPLCRI 874 (874)
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHCCCC
T ss_conf 0024433655542334213334468999999999999999999968988878999--8776887984410379
No 3
>COG3893 Inactivated superfamily I helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=556.02 Aligned_cols=693 Identities=41% Similarity=0.697 Sum_probs=615.3
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHH
Q ss_conf 84898389889379999999711210112367898133222067627968999999999851188865140331257765
Q gi|254780823|r 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 (1040)
Q Consensus 6 ~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~ 85 (1040)
++||+||||.|||+++|++++++.+..+++ ++.+|..|+.++|++|| +++.|+..+....+++ .++|+|+++|+..
T Consensus 1 ~r~~sip~g~pFl~~~A~~l~~g~l~~~~~-~p~~plal~~~ti~Vpt--saRaLr~~fvd~~~gr-alLP~i~~LG~~f 76 (697)
T COG3893 1 MRVFSIPPGPPFLPTLAEALLNGRLTPGFR-MPLDPLALASATIYVPT--SARALRHFFVDLGGGR-ALLPRIRPLGEAF 76 (697)
T ss_pred CCEEECCCCCCCHHHHHHHHHCCCCCCCCC-CCCCCEECCCCEEECCC--HHHHHHHHHHHHCCCC-CCCCHHHHCCHHH
T ss_conf 960425999853489999996266565667-99985113551365225--2889999999705751-0141465437243
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 65540454334677888881899999999999998631000000122321113569788999899999999999975999
Q gi|254780823|r 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 (1040)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~ 165 (1040)
+........++.|++++-+|++++++++..|++.+........ ..+...+..+.++.+++.+|..+||.+.+++.+
T Consensus 77 ---fd~~~~~~l~lap~iss~~rlilla~li~aw~~~lp~~v~al~-~~~~~~p~s~a~ai~lar~ls~l~d~~dte~~~ 152 (697)
T COG3893 77 ---FDAEPAAYLDLAPPISSRERLILLARLILAWRDSLPKHVLALF-QDELFFPASTADAIWLARNLSELFDLFDTESSE 152 (697)
T ss_pred ---HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---1487422246898876188999999999999865268888753-341005563788999998899999998775320
Q ss_pred HHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHHHH
Q ss_conf 78987400220207999999999999999999753248889899999999874434422-76880999834566167999
Q gi|254780823|r 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATAR 244 (1040)
Q Consensus 166 ~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~-~~~~~i~v~g~~~~~~~~~~ 244 (1040)
|+.|..|...+...+||..++||.++|..|..++.+.+..+++.++...++..+....+ ++-.+|+..|+++ |++..
T Consensus 153 ~~kld~L~~~d~a~~wq~tl~fL~~v~~~w~~~L~e~~~~~~~~~r~~~~rae~~r~~~~p~~gpvI~agsTg--PatAd 230 (697)
T COG3893 153 WDKLDDLATGDLAAWWQVTLEFLEIVYDAWPKRLEELGRSNPAAHRNALFRAEAMRLKNNPPTGPVIAAGSTG--PATAD 230 (697)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC--CCHHH
T ss_conf 5666315652079999999999999999999999861677721112367888998776389877777506898--31678
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHH
Q ss_conf 99998614896899824863210788864334201233333444676368999999762999666025776664536777
Q gi|254780823|r 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 (1040)
Q Consensus 245 ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 324 (1040)
++..+...++|.+++++.| .|+.+ .+||||.+.+++ |+.+..+..+..
T Consensus 231 Ll~~~~alp~g~vvlpGlD------~Wq~~--------------~~hpq~g~~~ll---G~~R~~v~~~~~--------- 278 (697)
T COG3893 231 LLAVIAALPQGAVVLPGLD------EWQAI--------------EGHPQYGFHSLL---GAERQLLLEIAE--------- 278 (697)
T ss_pred HHHHHHHCCCCCEECCCHH------HHHHH--------------CCCCHHHHHHHH---HHHHHHHHHHHH---------
T ss_conf 9999985468852056547------77764--------------168456789998---888999999975---------
Q ss_pred HHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 75444201112210000001235676532133781599559989999999999999864229849998026411357888
Q gi|254780823|r 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 (1040)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~~~~avv~~d~~~~~~v~~ 404 (1040)
..+.++|+..+..|...... .......++++++.+.++|+-.|+-.++++++.+ +..++|++|+.+.++|..
T Consensus 279 --~~eaL~Pa~~t~~w~~~~~~-----~~e~la~~~lieaa~e~dea~aiA~alr~aLe~~-~~aALVt~Dr~lARRV~~ 350 (697)
T COG3893 279 --ADEALRPAELTASWDKYNRG-----FLEALAFVTLIEAANERDEAYAIALALREALEAP-RTAALVTPDRNLARRVAT 350 (697)
T ss_pred --HHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH
T ss_conf --14311515667668875245-----8887525469886531346799999999998483-300001674378999999
Q ss_pred HHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 43551377766569003528898999999999837999789999862965456679389999999732232104557778
Q gi|254780823|r 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 (1040)
Q Consensus 405 ~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1040)
.|.++||+++.|+|.||+.++...+++.+++.+.+|.|...++.++|||++.++......+.....++....++.....+
T Consensus 351 ~L~R~gv~adds~G~pLs~t~~aal~~~~ie~v~rpgDPv~Ll~llKhPl~~fg~e~~~~~~aa~~LEl~alrg~~~s~~ 430 (697)
T COG3893 351 ELARFGVEADDSAGTPLSATPQAALLMLLIEAVLRPGDPVALLALLKHPLARFGLEFLDLRDAANVLELAALRGGKVSPG 430 (697)
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCC
T ss_conf 99870877665568754322777999999999807997698999970941204771232107577788998607888831
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 11178887522011444434552010155343257999999989999998750110022102378899999999999723
Q gi|254780823|r 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 (1040)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 564 (1040)
+..+...+........+..+.+.|...........++.+...+.....++.... ......+..+.......++.+
T Consensus 431 ~~~L~~lle~rl~~~~d~~~~p~~~~~~~~~~i~lA~~L~~~i~~A~~pl~~~~-----~~~~~~l~~~a~~t~~ale~l 505 (697)
T COG3893 431 YGELPALLEARLLGTSDDDLPPAWRAGLDPDNIALARLLLQRISEAKAPLGAGH-----FEAIADLLALALDTVRALENL 505 (697)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf 667999999985124666678520203694247999999999886435632322-----777763999999999999862
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEE
Q ss_conf 67632111456657779999999986642137664477889999998622443356677877379803433356658637
Q gi|254780823|r 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 (1040)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v 644 (1040)
..+.......+|.++++..+...+.........+. ..+|.+++..++.+..+.+.+..++.|.|||.+++|++.||.|
T Consensus 506 ~~dd~g~l~~lw~~eage~L~~l~~gl~~~~a~ls--~~ew~diLd~L~~ge~vkp~~~~hprv~I~gaLEaRl~~~D~V 583 (697)
T COG3893 506 AIDDEGYLLALWLGEAGEKLAALLRGLIEAGAQLS--APEWPDILDALVAGETVKPAPGTHPRVRIMGALEARLQRFDGV 583 (697)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCHHHHHCCCCEE
T ss_conf 56621039999875055799999999986146567--3057899998617762367888887168831046656003528
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHCC
Q ss_conf 8528631134566666764896788564899966788899999-999855985999920467776656653788877314
Q gi|254780823|r 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 (1040)
Q Consensus 645 ~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~-~~~~~~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~ 723 (1040)
++.|+|||.||+....++|++..+|+.+|+++++++.++.+|+ |.++..+++|++|++.+.++.+..+|+|++++....
T Consensus 584 Vi~glNEg~wP~~~~nd~FlSr~mr~~lgL~pperR~glqAhd~fqma~na~eVvLt~~~r~g~ap~v~SrwLeRL~~l~ 663 (697)
T COG3893 584 VIVGLNEGVWPSKTPNDLFLSRPMRKSLGLPPPERRIGLQAHDYFQMAKNAPEVVLTRSERSGEAPAVSSRWLERLLTLL 663 (697)
T ss_pred EEECCCCCCCCCCCCCCHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99557756488999651233458897459989678754666489999659981798632015898604568999999985
Q ss_pred CCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 73100001136532234787521012343454
Q gi|254780823|r 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 (1040)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 755 (1040)
+.......+.++..+..|...++.+.+..+..
T Consensus 664 ~e~~~~~~r~~g~~~~~w~~~~D~~~~~~~~~ 695 (697)
T COG3893 664 GEAGTEQLRRRGDALLHWSRLLDEGEPQAPVP 695 (697)
T ss_pred HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf 03467777512087756222002478877778
No 4
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=100.00 E-value=0 Score=441.75 Aligned_cols=878 Identities=15% Similarity=0.109 Sum_probs=585.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHH-CCHHH-----HH
Q ss_conf 9999999999986310000001223211135697889998999999999999759997898740022-02079-----99
Q gi|254780823|r 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMW-----WL 182 (1040)
Q Consensus 109 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~-~~~~~-----w~ 182 (1040)
-..+..++....+.+-- ......--||...|...+.++..+.|+|++|...... +...+ -.
T Consensus 93 ~M~i~K~~ee~k~~lkv-------------y~~A~~~~GF~~~l~~~itEfKry~v~pe~L~~~~~~~~~~~~~~~~~l~ 159 (1192)
T TIGR02773 93 EMLIRKVIEEHKDELKV-------------YQKASRKKGFLAKLSEMITEFKRYEVTPEDLRKAAEELEDSERRSERVLK 159 (1192)
T ss_pred HHHHHHHHHHHCCHHHH-------------HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999860111247-------------88862325348999999887622068988999998610132024416677
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99999999999999975324888989999999987443442276880999834566167999999986148968998248
Q gi|254780823|r 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 (1040)
Q Consensus 183 ~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~ 262 (1040)
..+..|.++|+.|..+|.. +..|.......+.+.+..... --...|+||||+.+||.|..+|.+|.+.+....|..+.
T Consensus 160 ~KL~Dl~~iY~~fe~~L~~-~y~~~ED~L~LL~~~l~~s~~-~~~AeiyIDGF~~Ftp~e~~Vi~~L~k~a~~vtv~Lt~ 237 (1192)
T TIGR02773 160 EKLEDLSLIYQEFEERLAD-EYIDSEDQLNLLAEKLEQSEL-LKGAEIYIDGFTSFTPQEYSVIEKLMKKAKKVTVSLTL 237 (1192)
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 6689999999999998707-757733448899987214254-35851798356576779999999985312524799854
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 632107888643342012333334446763689999997629996660257766645-3677775444201112210000
Q gi|254780823|r 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE-MYGRSMVISKSFLPPDTSDMRN 341 (1040)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~ 341 (1040)
|..-+... .++. .-+-.+...-+.+..+....++.............. ...+...++ . .
T Consensus 238 D~~~~~~~---~de~------~LF~~t~~t~~~L~~la~~~gi~v~~~~~~~~~~~~RF~~~~~LA~-------L----E 297 (1192)
T TIGR02773 238 DEPEYKEE---EDEL------DLFRATSETYYRLKELAKELGIEVEEPIFLNEERPNRFKKNKELAH-------L----E 297 (1192)
T ss_pred CCCCCCCC---CCCH------HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHH-------H----H
T ss_conf 86110157---8853------2225867899999999987498501034421332331146854899-------9----9
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCEEEEEECCCCHHH-HHHHHHHHHCCCCCCCC
Q ss_conf 0012356765321337815995599899999999999998642---2984999802641135-78884355137776656
Q gi|254780823|r 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLAR-RVKLELTRFGINIDISA 417 (1040)
Q Consensus 342 ~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~---~~~~~avv~~d~~~~~-~v~~~L~~~gipv~~s~ 417 (1040)
................+++++.|.++++|+..||+.|++..++ .++||||++||...+. .|...+..++||++|..
T Consensus 298 ~~f~a~p~~~y~~~~~~l~i~~A~n~r~EvE~vAr~I~~L~Rdk~YRY~Diail~Rd~~~Y~~Lv~~vf~~YeIP~fID~ 377 (1192)
T TIGR02773 298 KQFDARPFKAYKEKEKSLSIFEANNRRAEVEGVARDILRLVRDKQYRYKDIAILTRDLEDYEKLVEAVFSDYEIPYFIDK 377 (1192)
T ss_pred HHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHEECCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 88401676676677656221110576135678999999997416784000342003821268999998513778701346
Q ss_pred CCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 9003528898999999999837999789999862965456-6793899999997322321045577-7811178887522
Q gi|254780823|r 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNS-YDIMDLKSLVLDR 495 (1040)
Q Consensus 418 g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 495 (1040)
-.++..||.+-+++++|+++...|..++++++||..++.. .......+.....+|++....+... ..|..-..+....
T Consensus 378 K~~m~~hPlIe~irS~levi~~NW~ye~~Fr~lKT~ll~~~~~~~~~~~~~iD~LENYVle~GIkg~~rW~~E~~~~y~~ 457 (1192)
T TIGR02773 378 KRSMTNHPLIEFIRSILEVIQKNWRYEAVFRYLKTGLLFNVEEKFIDLRELIDLLENYVLEYGIKGKKRWWKEKWFKYRR 457 (1192)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCEEEEEECCCCCEECCCCEEEEEH
T ss_conf 50102264866889999997615881267888765036776545436798864341201143045633113686454300
Q ss_pred CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCC-------
Q ss_conf 0114444345520101553432579999999899999987501100221023788999999999997-23676-------
Q gi|254780823|r 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ-NVCLD------- 567 (1040)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~------- 567 (1040)
........+. ..-...+........++.+...+.. +...... .-+..+.+..+..+++ ....+
T Consensus 458 f~~~~~~~~~---~td~E~e~~e~~N~~R~~iv~pl~~---~~~~~~~---aktvke~A~alY~fLes~~d~p~~L~~~r 528 (1192)
T TIGR02773 458 FRGLDEKEFA---QTDEERELQEKLNELREDIVDPLET---FEKRLKK---AKTVKEFATALYEFLESELDIPEKLEKFR 528 (1192)
T ss_pred HCCCCCHHHC---CCHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHH---CCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 0025621202---4533578899987657775017899---9998531---33647999999998877413468889999
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf -----321114566577799999999866421376644778899999986224433566778773798034333566586
Q gi|254780823|r 568 -----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 (1040)
Q Consensus 568 -----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~ 642 (1040)
.+....+-+..+.|..+..+++.+++..+...++...|..++..++....+...++..|.|.|.++..+|...-+
T Consensus 529 ~~~~~~G~~e~A~e~~Q~Wdavi~lLde~VevlG~E~~~L~~F~~~~~iGle~l~fs~iPpaLDqV~vg~~d~~k~~n~k 608 (1192)
T TIGR02773 529 DRFDEDGRLEEAREYEQIWDAVIQLLDEMVEVLGEEEMDLNEFQEVIDIGLEQLEFSLIPPALDQVLVGDMDRAKMSNTK 608 (1192)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCHHHCEEEECCEEEEEECCCC
T ss_conf 97641784022356899999999999999887378701789999999843012434227720485665131100005872
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHC---C---CC-CHHHHHHHHHHHHHHH-H-CCCEEEEEEECCC-CCCCCCC
Q ss_conf 378528631134566666764896788564---8---99-9667888999999998-5-5985999920467-7766566
Q gi|254780823|r 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDL---N---LK-TAEKYIGQAAHDFEMA-N-GTRHLIYTRSLRE-NNIPTIA 712 (1040)
Q Consensus 643 ~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l---~---l~-~~e~~~~~~~~~~~~~-~-~a~~v~lt~~~~~-~~~~~~p 712 (1040)
++|++|+|||+||.....++.+.+..|.-+ + |. +.+.+.....+..|.+ + +...+.+||+..+ .|....|
T Consensus 609 ~~y~lG~NDGv~P~~~~e~GilsD~eR~~L~~~~q~~L~~~~~~~~~dE~Fl~Y~A~t~ase~L~~SYplaD~EGk~~~p 688 (1192)
T TIGR02773 609 VIYLLGVNDGVLPARSKEEGILSDEERELLEQKGQVELSSTSKEKLLDEQFLVYTAFTSASERLKVSYPLADAEGKSLRP 688 (1192)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 69997457765688877677546899999985165012630233211578999998707855368852135612412475
Q ss_pred CHHHHHHHHCCCCCCHHHCCC----------------CCCCHHHHHHHHHCCCCCC----CCC-----------------
Q ss_conf 537888773147310000113----------------6532234787521012343----454-----------------
Q gi|254780823|r 713 SRWLQRLLVLGGTDFFDNLKK----------------RGQCYLDWTRKLDYTTKQP----HYK----------------- 755 (1040)
Q Consensus 713 s~~l~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~----~~~----------------- 755 (1040)
|.++.++...-.......... .....-....++..-.... +.+
T Consensus 689 S~~i~rl~~lFp~~k~~~~~~~~~~~sD~~~l~~v~~~~~t~~~l~~~L~~w~~~~~~~~~vW~~vY~~y~~~~~~~~~~ 768 (1192)
T TIGR02773 689 SIIIHRLKELFPKLKESLLLVEPEDVSDEEQLSYVSAKLPTLSELTSQLKKWKRGYPISDDVWWDVYQWYREEDKWKKKL 768 (1192)
T ss_pred CHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf 63789999860223111201054211222457651462167899999999843156766512587788862078221228
Q ss_pred ----------------CCCCCCCCCC---CCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----------------7556763001---246778004577642836888976328888872124899889989999999
Q gi|254780823|r 756 ----------------RPKPFPPLEA---QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 (1040)
Q Consensus 756 ----------------~~~~~~~~~~---~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~L 816 (1040)
.......... .....|+|++|+|.+|||+||++|+|+++++.. ..++|.+.|+++|.+|
T Consensus 769 ~~vl~gL~Y~N~~~~l~~~~~~~LYgdnk~~I~~SVSRlE~Y~~CpF~hfa~yGLkl~ER~~--Y~L~apDlG~~fH~~L 846 (1192)
T TIGR02773 769 EYVLSGLVYDNKTKKLQKEKAKKLYGDNKERIQASVSRLEKYNACPFAHFAQYGLKLKERKI--YKLEAPDLGQLFHEAL 846 (1192)
T ss_pred HHHHHCCEEECCCCCCCHHHHHHCCCCCCCEEEEEEECCHHHCCCCHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHH
T ss_conf 88860522216644279789973167441147234401000017832556502532002552--5679963678999999
Q ss_pred HHHHHHCCCCCCH-------HHHHHHHHHHHHHH---HHCCCCHHH-HHHHHHHHHHHHHHHH--HHHHHCCCCCEEEEE
Q ss_conf 9998612589834-------78999999999996---532798669-9999999999999999--999732468859999
Q gi|254780823|r 817 TELIKKRINKNTP-------EINHLMKQIIDSHF---EKENLPPHI-DIIWRHLFHKISHSFL--EHEEKIQSSIEKIFV 883 (1040)
Q Consensus 817 e~~~~~~~~~~~~-------~~~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~ 883 (1040)
+.+.........+ ........++++.. ......... ...-..|+.+++.+.+ -.|....+.|.|+..
T Consensus 847 ~~Is~~l~~e~Ldw~~L~k~~c~~~~~~ave~l~p~~q~~IL~SS~Ry~Y~~~rl~~i~~ra~~vl~Eq~K~S~F~P~g~ 926 (1192)
T TIGR02773 847 KEISDELKEEELDWSDLTKEQCRALANEAVEELVPKIQHEILLSSKRYRYVQKRLKRIVTRAVKVLSEQAKRSKFVPVGL 926 (1192)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99999996237870114768999999999987634534776223467899999999999999999998753278721224
Q ss_pred EEEEEEEE--------------CCCCEEEEEEEEEEEECC-CCC--EEEEECCCCCC--C-CHHHHHCCCCCCHHHHH-H
Q ss_conf 96568897--------------882379999997888879-985--89997268534--6-88798423012169999-9
Q gi|254780823|r 884 NIPAKMAI--------------ESIGIHLTGFADRIDLLK-SGF--VDITDYKTGDN--P-KKETAQKLIDPQLSLEA-A 942 (1040)
Q Consensus 884 E~~~~~~i--------------~~~~~~l~GrIDRid~~~-dG~--~~IvDYKTG~~--p-~~~~~~~~~~~QL~lY~-~ 942 (1040)
|+.|+..- .|..+.|+|||||||... ||. ++|||||||.| . ..+++..|.++||..|. .
T Consensus 927 E~~FG~~~~~se~~ppl~~~L~~G~~~~L~GRIDRvD~~e~e~~~ylRIIDYKSsnPsk~LDL~~VYYGl~LQmLtYLD~ 1006 (1192)
T TIGR02773 927 ELGFGFGGDNSEELPPLKLILKNGEELKLRGRIDRVDKAEKEDETYLRIIDYKSSNPSKKLDLTEVYYGLALQMLTYLDI 1006 (1192)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEHCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 54136798987567873223268876787321000211015898148888703788873543577666899999999999
Q ss_pred HHHHCCCCC--CCCCCCCCEEEEEECCCC-----C---------------------------------------------
Q ss_conf 998288677--785574213888606866-----5---------------------------------------------
Q gi|254780823|r 943 ALKAGSFSQ--IDCRKVANLFYIRLKQKF-----K--------------------------------------------- 970 (1040)
Q Consensus 943 ~~~~~~~~~--~~~~~~~~~~y~~l~~~~-----~--------------------------------------------- 970 (1040)
++.+...-. .....|+|.+|-++-++. .
T Consensus 1007 ~l~~s~~~~~lg~~a~PaGvLYFhihdp~~~a~~~GeleDDaLt~e~i~~E~~K~~Kl~GLlL~d~~vV~~MD~~LE~G~ 1086 (1192)
T TIGR02773 1007 VLTNSEKWLKLGNQAKPAGVLYFHIHDPIVSAKKDGELEDDALTEEEIEKELLKEYKLKGLLLSDLDVVKLMDTTLEEGK 1086 (1192)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 99858999971065477604556643723300788765302478889999987776430553677899999763035786
Q ss_pred -----------CCCCCCC-CCCC---CHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -----------5434565-4558---9888999999999999999848898---85555451015668986544201443
Q gi|254780823|r 971 -----------IDCITND-KKKY---SADELSEKSLKNLIEIVTLLQNGEQ---PFISHLRLSEKSNIQSEYDHLARVAE 1032 (1040)
Q Consensus 971 -----------~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~---~f~~~~~~~~~~~~~~~y~~l~r~~e 1032 (1040)
-...... .... ..+-+..-.++.+.++-.++.+|.+ ||--. .+..|.||.|.+.|.+.+
T Consensus 1087 ~S~IvPA~lKKdG~l~~~Gs~~~~~~~Fe~l~khv~~~~~~~g~~i~~G~v~i~PyK~~---~~~pC~yC~F~SvC~FD~ 1163 (1192)
T TIGR02773 1087 SSNIVPASLKKDGSLGSRGSKVATEEEFELLRKHVKKKFKEAGENILEGKVSIEPYKKK---KQTPCQYCNFSSVCQFDT 1163 (1192)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf 33447142145856564642003678899999999889999987650794001356567---888756578813055567
Q ss_pred HHH
Q ss_conf 102
Q gi|254780823|r 1033 WRE 1035 (1040)
Q Consensus 1033 w~~ 1035 (1040)
--+
T Consensus 1164 ~l~ 1166 (1192)
T TIGR02773 1164 SLE 1166 (1192)
T ss_pred CCC
T ss_conf 346
No 5
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=378.85 Aligned_cols=902 Identities=15% Similarity=0.103 Sum_probs=541.2
Q ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20676279689999999998511888651403312577656554045433467788888189999999999999863100
Q gi|254780823|r 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 (1040)
Q Consensus 46 ~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~ 125 (1040)
.|.-++|+.-.-.-=++.| .+.+-++++.=+|.++..+++..+.......- ..++....-+...+++....+.+.-
T Consensus 31 pviyIvP~q~sFe~E~~~L-~~~~~~g~~~i~V~~F~rLa~~i~~e~g~~Sk---~~L~~~g~~Mlfyk~l~e~k~~l~v 106 (1108)
T COG3857 31 PVIYIVPSQMSFEKEKEIL-ERLRQGGSFRIQVTRFKRLAYYILQETGGPSK---THLGDTGLSMLFYKILEELKKELKV 106 (1108)
T ss_pred CEEEECCCCHHHHHHHHHH-HCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1799836622078789997-07244870258998789889999986077203---2221204899999999975788788
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00001223211135697889998999999999999759997898740022020799999999999999999975324888
Q gi|254780823|r 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 (1040)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~ 205 (1040)
.....+-.+|...|++++.++..+++.+++|.......-.. .+.-|..+|+.+...+. .+..
T Consensus 107 -------------y~~~~~~~gF~~~l~el~~E~Kk~~lsve~L~~~~~~~~~~----kl~dl~liyee~~~~l~-~~~l 168 (1108)
T COG3857 107 -------------YGSLADKSGFIEQLAELYTEFKKYQLSVEDLEDTADEQSLK----KLHDLSLIYEEFEANLY-NNYL 168 (1108)
T ss_pred -------------HHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHH----HHHHHHHHHHHHHHHHH-HCCC
T ss_conf -------------88651022589999999999998548898874454514454----34439999999999887-4668
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999998744344227688099983456616799999998614896899824863210788864334201233333
Q gi|254780823|r 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 (1040)
Q Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 285 (1040)
++......+++...... ..-...|+||||+.++|.+.+++..|.+.+.-.++....|..-....... -.-
T Consensus 169 ~~ed~l~~lad~~~~s~-~L~~~~IvIDGFt~FS~~E~~vIe~L~~~~~~v~I~lt~d~~~y~~~~~~---------~~i 238 (1108)
T COG3857 169 DPEDSLSRLADKIKKSE-QLKQAAIVIDGFTRFSPEEYRVIELLMKKCARVTIGLTADKKAYTKGSEE---------GNI 238 (1108)
T ss_pred CHHHHHHHHHHHCCCCH-HHCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCC---------CHH
T ss_conf 82778999987263316-55463499815444788899999999841855999973372221057432---------239
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 44467636899999976299966602577666453677775444201112210000001235676532133781599559
Q gi|254780823|r 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 (1040)
Q Consensus 286 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~ 365 (1040)
+....+..+++......+.+..........-....... ... . .................+++..|.
T Consensus 239 f~~s~~~l~~L~~~a~~~~i~~~~~~~~~~~~~~~~~L------~~l----~----~~~~~~~~~~~~~~~~~i~I~qa~ 304 (1108)
T COG3857 239 FRASKKTLFRLLSKAEELNISIEQYNEVLYKFTKLQDL------AHL----E----NDFDQLPIEIYAKDADHISIWQAS 304 (1108)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH------HHH----H----HHHHHCCCHHHCCCCCCEEHHHHH
T ss_conf 89769999999988631466410777787764033668------999----8----665304421100575434267520
Q ss_pred CHHHHHHHHHHHHHHHHHHC--CCEEEEEECCCCHHH-HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf 98999999999999986422--984999802641135-788843551377766569003528898999999999837999
Q gi|254780823|r 366 NEREEAISIAIALRMSLDEN--KKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 (1040)
Q Consensus 366 ~~~~Ea~~ia~~lr~~~~~~--~~~~avv~~d~~~~~-~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~ 442 (1040)
+..+|...||+.||+...++ +++++|+++|...+. .+-..+..++||++++...++.+||.+.++.+++++....|.
T Consensus 305 n~keEiEgvAr~Irq~i~eg~rYkDiaIL~gD~~aYe~~l~~If~~y~IP~fidk~~sM~~HPli~fi~Sll~~~~~NW~ 384 (1108)
T COG3857 305 NQKEEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLKEIFKLYEIPFFIDKKRSMADHPLIEFIESLLDIKRYNWR 384 (1108)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 55999999999999986148751204333178688999999999870887342542103329689999999999984544
Q ss_pred HHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 789999862965-45667938999999973223210455777-8111788875220114444345520101553432579
Q gi|254780823|r 443 FMAIATLVKHPL-AKFGFPEKYLSRAKNALELVALRGNKNSY-DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 (1040)
Q Consensus 443 ~~~l~~LL~sPl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1040)
.++++++|++-+ +....+ .....++......+..+. .+.. .+....... .......
T Consensus 385 ~e~vl~llKt~~~f~~~~~-----~~iD~lEnYvl~~GI~G~~kw~k--~f~~~~~~~---------------~~~~~~l 442 (1108)
T COG3857 385 YEPVLNLLKTDVLFDSNES-----EDIDLLENYVLAAGIKGKKKWTK--LFTYEHFRK---------------IENLERL 442 (1108)
T ss_pred HHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHC---------------HHHHHHH
T ss_conf 6589999975124455664-----77899999999936664044666--755987604---------------1269999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC------------CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999989999998750110022102378899999999999723676------------321114566577799999999
Q gi|254780823|r 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD------------EHRKLPNLWFEEEGKTLSSLF 588 (1040)
Q Consensus 521 ~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~ 588 (1040)
.....+ .+.|+..+...... .....+...+...++..... ...........+.|..+..++
T Consensus 443 ne~r~~---il~pL~~l~~~sr~----kt~~~~~~al~~~Le~~~v~e~l~~~~~e~~~~g~~~~a~~~~qvW~~~ielL 515 (1108)
T COG3857 443 NETRLD---ILHPLETLLKMSRA----KTVKELAQALYEFLEEGRVPEQLQTERQEAELNGRHVEAEEHEQVWNALIELL 515 (1108)
T ss_pred HHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987---76699999987788----88999999999999961489999888877664016898999999999999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 86642137664477889999998622443356677877379803433356658637852863113456666676489678
Q gi|254780823|r 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 (1040)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~ 668 (1040)
+.+++..+...++...|.+++...+....+...++..+.|.|.++.-++...-+.|++.|||+|++|......+++.+..
T Consensus 516 eefv~vfg~e~l~l~~Fleil~~Gle~~kf~~iP~tlDqV~I~s~dlv~~~~~~~vYaiGmndg~fP~~~~~sglLSDed 595 (1108)
T COG3857 516 EEFVEVFGDEKLSLELFLEILHIGLESLKFRLIPATLDQVSIGSYDLVKPHTKKFVYAIGMNDGVFPAPHKNSGLLSDED 595 (1108)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 99999865673359999999997665300243277556577501131232468769998247887888632257666677
Q ss_pred HHHCCCCC------HHHHHHHHHHHHHHH-H-CCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCC---CCHHHCC-----
Q ss_conf 85648999------667888999999998-5-598599992046777665665378887731473---1000011-----
Q gi|254780823|r 669 QSDLNLKT------AEKYIGQAAHDFEMA-N-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---DFFDNLK----- 732 (1040)
Q Consensus 669 r~~l~l~~------~e~~~~~~~~~~~~~-~-~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~---~~~~~~~----- 732 (1040)
|..+...+ .........+.++.+ . .+.++++||+..+..+ +|..+.++...... .......
T Consensus 596 R~~ln~~~v~l~~~s~~n~~~~~f~~y~~~~~a~~~L~lSyp~~~~eg---~s~~~~~~~~lf~~~~~~~~~d~~~~~~~ 672 (1108)
T COG3857 596 REYLNQITVELSIASKENLKKNQFTVYSLVNSAKEELVLSYPIADNEG---ESPILNPVEQLFPNFGQLPLLDIEQNNDE 672 (1108)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCC---CCHHHCHHHHHHCCCCCCCCCCHHHHCCH
T ss_conf 889875161047514667876568999998535771899712442158---63111446786202244411566550432
Q ss_pred ---------------------------CCCCCHHHHHHHHHCCCCCCCCC---------------CCCCCCCCCCCCCCC
Q ss_conf ---------------------------36532234787521012343454---------------755676300124677
Q gi|254780823|r 733 ---------------------------KRGQCYLDWTRKLDYTTKQPHYK---------------RPKPFPPLEAQPRTY 770 (1040)
Q Consensus 733 ---------------------------~~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~l 770 (1040)
.-...|...-+.+.......... .......+......+
T Consensus 673 e~~~~i~~~~a~~s~l~~~~r~~~~~~~~~~~w~~vyr~l~k~~~~~~~~~~~s~l~~~net~~l~e~~~~~lyG~~l~~ 752 (1108)
T COG3857 673 ESLSLIGNYKATLSLLVSILRQEKDEEQVSDFWWDVYRVLSKSDHNQGLENPLSALSFDNETLKLGEETALQLYGEELYL 752 (1108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 12888866578999999999988752335677999999873422304554133431245520002068775442774476
Q ss_pred CCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHH---HHHHHHHHHHHHHH
Q ss_conf 80045776428368889763288888721248998899899999999998612589---8347---89999999999965
Q gi|254780823|r 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPE---INHLMKQIIDSHFE 844 (1040)
Q Consensus 771 S~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~---~~~~---~~~~l~~~~~~~~~ 844 (1040)
|+|+++.|.+|||+||++|+|++.+... ..+++.+.|+++|.++|++....... +... ....+...+.+.+.
T Consensus 753 SVSrlE~f~~Cpf~yf~~ygL~Lker~~--~~l~~~dlG~~fH~v~e~i~e~~~~~~~d~~~l~~~~~~~l~~~i~~~~~ 830 (1108)
T COG3857 753 SVSRLEKFYRCPFSYFLEYGLGLKERKD--IHLDARDLGNFFHRVFERISEEENLENQDWNFLNEEDCERLTQKIVEVLL 830 (1108)
T ss_pred EHHHHHHHHCCCHHHHHHHHHCCCCEEC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5187788873967999998626450001--57786147899999999999864210688421358899999999999862
Q ss_pred H----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEEE------E---CCCCEEEEEEEEEEEEC
Q ss_conf 3----27-986699999999999999999999732--4688599999656889------7---88237999999788887
Q gi|254780823|r 845 K----EN-LPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAKMA------I---ESIGIHLTGFADRIDLL 908 (1040)
Q Consensus 845 ~----~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~E~~~~~~------i---~~~~~~l~GrIDRid~~ 908 (1040)
. .. ...........+++.++++...+...+ ...+.|+..|..|+.. + .|.++.|+|||||||..
T Consensus 831 ~~~~~~il~ss~r~~y~~~kL~~Ivr~t~~iL~e~~~~~~f~pi~~E~~Fglk~~~~~~i~l~~g~~i~l~GrIDRID~~ 910 (1108)
T COG3857 831 EKEQEQILLSSARYEYTLEKLEDIVRRTATILAEQAKFSDFEPIGEEASFGLKGLPPLTIGLPSGSEILLRGRIDRIDQL 910 (1108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHCCCCCCCCCCEECCCCCCEEEEEEEEEHHHHH
T ss_conf 78899998500777999999999999879999743455453020033314789987610117999869997433123332
Q ss_pred CC-CCEEEEECCCCCC-CCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC-------------
Q ss_conf 99-8589997268534-68879842301216999999982886777855742138886068665543-------------
Q gi|254780823|r 909 KS-GFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC------------- 973 (1040)
Q Consensus 909 ~d-G~~~IvDYKTG~~-p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~------------- 973 (1040)
.+ |-+.|||||||.. -...++..|+++||+.|.-++.+.+-.. . .+++|++|.++........
T Consensus 911 ~~~~~l~IvDYKSsa~~f~l~~vYyGL~lQlmTYLdai~q~~~~~-~-~~p~GalYfhm~eP~i~~~~~~~l~~i~~el~ 988 (1108)
T COG3857 911 EKDGYLGIVDYKSSAHQFDLTDVYYGLSLQLMTYLDAIKQNAPED-D-VKPGGALYFHMHEPEIKLNSDLGLDKIEQELK 988 (1108)
T ss_pred CCCCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH-C-CCCCCEEEEEECCHHHHHCCCCCHHHHHHHHH
T ss_conf 258815888723652114524321441287999999998740431-1-56441478884385653023444688999998
Q ss_pred -------CC-CCC------------------CCC------CHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCC
Q ss_conf -------45-654------------------558------9888999999999999999848898---855554510156
Q gi|254780823|r 974 -------IT-NDK------------------KKY------SADELSEKSLKNLIEIVTLLQNGEQ---PFISHLRLSEKS 1018 (1040)
Q Consensus 974 -------~~-~~~------------------~~~------~~~~~~~~~~~~l~~~~~~~~~~~~---~f~~~~~~~~~~ 1018 (1040)
.. .+. +.. ..+.+..--+...++...++.+|.+ ||...- +..
T Consensus 989 Ks~k~kGL~l~d~~~~d~~le~ii~a~~kkng~l~~~~~~efd~L~~~n~~~y~ea~~~i~~G~~sInPyk~~~---k~p 1065 (1108)
T COG3857 989 KSMKYKGLFLEDETEMDQRLEIIIPAGLKKNGSLSQATEEEFDLLLKHNRNLYQEAAEQILDGDFSINPYKKKK---KTP 1065 (1108)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---CCC
T ss_conf 75653010006867775566663003432564213354899999999999999999986325765666501378---878
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 68986544201443
Q gi|254780823|r 1019 NIQSEYDHLARVAE 1032 (1040)
Q Consensus 1019 ~~~~~y~~l~r~~e 1032 (1040)
|.||.|+..||+..
T Consensus 1066 c~~C~~kSiCrfd~ 1079 (1108)
T COG3857 1066 CQYCPYKSICRFDA 1079 (1108)
T ss_pred CCCCCCCHHCCCCC
T ss_conf 76576000106372
No 6
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=0 Score=375.72 Aligned_cols=720 Identities=14% Similarity=0.059 Sum_probs=413.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----H----HCCCCCEEEEEECCCCCHHHHHHHHHHHH--
Q ss_conf 9999999999999999753248889899999999874434----4----22768809998345661679999999861--
Q gi|254780823|r 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH----L----MKGTKGPIIIAGSTGSIPATARLMSTVAN-- 251 (1040)
Q Consensus 182 ~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~----~----~~~~~~~i~v~g~~~~~~~~~~ll~al~~-- 251 (1040)
++++.|-..+.+.|.......|+.|+.....+.+..+... | .....+||+||+.|||+|.|+.+|+.|+.
T Consensus 344 ~AAL~lA~~l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~WV~YKLD~GiDHILvDEAQDTSP~QW~iI~~LA~eF 423 (1190)
T TIGR02784 344 LAALRLAARLLQRYAALKKARGLLDFDDLIERTVALLARPSAGAWVHYKLDRGIDHILVDEAQDTSPEQWEIIQALAEEF 423 (1190)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEHCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999874789876779999999708898674300101775043771220048865899999998763
Q ss_pred -------CC----CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC----------CCCHHHHHHHHHHHCCC---CH
Q ss_conf -------48----96899824863210788864334201233333444----------67636899999976299---96
Q gi|254780823|r 252 -------HP----NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY----------STHPQYSLAKLLDFLDI---KR 307 (1040)
Q Consensus 252 -------~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~---~~ 307 (1040)
.. ..-++|..+|..|++|+|+|+.+..+......+.. .-...+.|++..+-|.. .+
T Consensus 424 F~GegAR~~sGr~~~RTiFAVGDeKQSIYSFQGA~P~~F~~~~~~~~~k~~~~~~~f~~~~L~~SFRST~dvL~~VD~vF 503 (1190)
T TIGR02784 424 FSGEGARSGSGREVERTIFAVGDEKQSIYSFQGADPERFAEERRLFSRKVRAVGRKFEDVSLTYSFRSTPDVLAAVDLVF 503 (1190)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 06864024676224532688767310445456775568999988999999861002677302023058489999998874
Q ss_pred HHCCCCCCCCCCCH--HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 66025776664536--777754442011122100000012356765321337815995-599899999999999998642
Q gi|254780823|r 308 EDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE 384 (1040)
Q Consensus 308 ~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-a~~~~~Ea~~ia~~lr~~~~~ 384 (1040)
++.....+...... ...+.......|....-|.....-.....+.++....+--.. ......-|..||..|+.+.+.
T Consensus 504 ~dP~~~~G~~~~~~q~~~~H~a~R~~~PG~V~LWd~i~DY~~~~e~~edW~~P~D~~~~~~p~~~LAerIAa~I~~w~~~ 583 (1190)
T TIGR02784 504 ADPENARGLSGDSEQAAVVHEAIRDDLPGEVDLWDLISDYKEEGEEPEDWTDPVDELGERAPEVRLAERIAAEIRAWLDR 583 (1190)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 48212148887755521237997428988588547723578788881002044570123063048999999999997189
Q ss_pred ----C--------C-------CEEEEEE-CCCCHHHHHHHHHHHH-CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCH
Q ss_conf ----2--------9-------8499980-2641135788843551-3777665690035288989999999998379997
Q gi|254780823|r 385 ----N--------K-------KKSALIT-ADRNLARRVKLELTRF-GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 (1040)
Q Consensus 385 ----~--------~-------~~~avv~-~d~~~~~~v~~~L~~~-gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~ 443 (1040)
+ + .||.|+| +...++..+.++|.+. ||||...+...|..|.+|.+|++|++++..|.|+
T Consensus 584 g~~i~vdGe~k~~g~~R~~~pGDiLvLVRkR~~l~~al~rALK~r~~iPVAGADRL~Lt~hiAV~DL~AL~rFvL~P~DD 663 (1190)
T TIGR02784 584 GEIIPVDGEDKGLGRRRAVRPGDILVLVRKRDALFSALIRALKRRKGIPVAGADRLKLTSHIAVKDLMALGRFVLQPEDD 663 (1190)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 86542158776646686335575367630557799999999983589834304403467412589999999985489843
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHH
Q ss_conf 89999862965456679389999999732232104557778111788875220114444345520101553432579999
Q gi|254780823|r 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 (1040)
Q Consensus 444 ~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 523 (1040)
.+|++|||||||+++.++++.++..+....+++.. |. .... +........
T Consensus 664 LSLA~lLKSPLfgl~ed~LF~LA~~R~~~esLw~~---------L~----~~~~-----------------e~~~~~~~~ 713 (1190)
T TIGR02784 664 LSLAALLKSPLFGLDEDDLFALAAGRSGGESLWAA---------LR----RRAA-----------------ESTAEFAET 713 (1190)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHH---------HH----HHHC-----------------CCCHHHHHH
T ss_conf 78999981568999878999995168975208999---------99----8515-----------------788548999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99989999998750110022102378899999999999723676----32111456657779999999986642137664
Q gi|254780823|r 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 (1040)
Q Consensus 524 ~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 599 (1040)
.+.|..+.. .....+..++. ..++..-+.+ -.....++ ..++...+..+++..........
T Consensus 714 ~~~L~~~~~-----------~ad~~~pf~Fy---a~~L~~d~g~GrshR~klL~RL-G~EA~D~lDEfL~~AL~~Er~g~ 778 (1190)
T TIGR02784 714 LAVLDAWLS-----------LADFLTPFEFY---ARLLGRDDGDGRSHRRKLLARL-GAEAEDILDEFLSQALAYERTGL 778 (1190)
T ss_pred HHHHHHHHH-----------CCCCCCCHHHH---HHHHCCCCCCCHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999971-----------34715509999---9986688998258999999841-43466899999999999872368
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC----------------
Q ss_conf 4778899999986224433566778773798034333566586378528631134566666764----------------
Q gi|254780823|r 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---------------- 663 (1040)
Q Consensus 600 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~---------------- 663 (1040)
-+..-|...|...-.+.+..+.. ..+-|+|||+|.+||++.++||++.-....|-......-.
T Consensus 779 PgLqaFL~~L~~~d~EiKRe~d~-~r~eVRvMTVHgaKGLEAPVVfLvD~gs~~~~~~~~~~l~~~~~~g~~~~~~~~~W 857 (1190)
T TIGR02784 779 PGLQAFLSWLEAADPEIKREMDQ-ARDEVRVMTVHGAKGLEAPVVFLVDTGSKPFASQRVPKLLATGGSGDANDVKVPLW 857 (1190)
T ss_pred CCHHHHHHHHHHCCCEEECCCCC-CCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
T ss_conf 60689999872079486125589-98878887765466566576770387723246888630121278887766403420
Q ss_pred ------CCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHH---CCC
Q ss_conf ------896788564899966788899999999855985-9999204677766566537888773147310000---113
Q gi|254780823|r 664 ------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN---LKK 733 (1040)
Q Consensus 664 ------l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~---~~~ 733 (1040)
.|..........-.....++.+..|+.+++|.+ ++++.....+........|..-+........... ...
T Consensus 858 ~~~~~~~~~~~~~a~~~~k~~~~~EyrRLLYVamTRAedrLIVcG~~~~g~~~~~~~sWy~~V~~Ala~~~~~~~~~~~~ 937 (1190)
T TIGR02784 858 RPASAFDPKLSAAARERLKERAEDEYRRLLYVAMTRAEDRLIVCGYRDSGKRESPKGSWYALVKRALAAAGIAKQTPHPA 937 (1190)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCC
T ss_conf 67431477268999999986887546787899989998675443467554566887657999987354576510231235
Q ss_pred --CCCCHHHHH------------------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHH-CC
Q ss_conf --653223478------------------752101234345475567630012467780045776428368889763-28
Q gi|254780823|r 734 --RGQCYLDWT------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI-LK 792 (1040)
Q Consensus 734 --~~~~~~~~~------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~-l~ 792 (1040)
.+.-|...+ ..........|..-..|.|+....++++|||.+...+..+-.--.... +
T Consensus 938 ~~~aegWQG~~~r~~~~~~~~~~~~~~~~~~~~~~~~aLP~~~~~p~p~~~~~~rpl~PS~~~~~i~~~~~~~~~~~~l- 1016 (1190)
T TIGR02784 938 EGEAEGWQGLAWRLRFTRRDLDPVAAEEEAAQTDTLEALPAWLRAPAPAEPALPRPLAPSGLSAAIDSAEPGEAVRSTL- 1016 (1190)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHE-
T ss_conf 6787543220111234257731246776666666678885676214777778887426766653344678741010010-
Q ss_pred CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88887212--4899889989999999999861258983478999999999996532798669999999999999999999
Q gi|254780823|r 793 LDFIPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 (1040)
Q Consensus 793 l~~~~~~~--~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 870 (1040)
+.|.-... ...-+..||++||+.||.++.- .++.-....+.++.. ....|+.. ++..+...+-..+..
T Consensus 1017 lSPvl~e~~~~~~~A~~RG~~lH~LLQ~LP~~----~~~~R~~aA~ryL~~---~~~~w~~a---~R~~l~~~v~~vL~~ 1086 (1190)
T TIGR02784 1017 LSPVLGEKTAARAFALLRGTLLHRLLQHLPDL----PPEEREDAARRYLAR---SAADWPEA---EREKLLAAVLAVLDD 1086 (1190)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH---CCCCCCHH---HHHHHHHHHHHHHCC
T ss_conf 10113787657689999999999999626798----867779999998741---02457868---899999999998416
Q ss_pred HHHC--CCCCEEEEEEEEEEEEECCCC-EEEEEEEEEEEECCC-CCEEEEECCCCCC-C-CHHHHHCCCCCCHHHHHHHH
Q ss_conf 9732--468859999965688978823-799999978888799-8589997268534-6-88798423012169999999
Q gi|254780823|r 871 EEKI--QSSIEKIFVNIPAKMAIESIG-IHLTGFADRIDLLKS-GFVDITDYKTGDN-P-KKETAQKLIDPQLSLEAAAL 944 (1040)
Q Consensus 871 ~~~~--~~~~~~~~~E~~~~~~i~~~~-~~l~GrIDRid~~~d-G~~~IvDYKTG~~-p-~~~~~~~~~~~QL~lY~~~~ 944 (1040)
-.-. .+..+..+|.+-..+.+.|.. ..|+|+||||-+++| .++.|||||||++ | +..++..+|-.||++|..++
T Consensus 1087 p~~~~~F~~~SRAEV~i~G~l~~~g~~P~avSG~IDRL~v~~~kk~V~iVDyKTNr~~P~~~~e~p~~Y~~QlA~Yr~~L 1166 (1190)
T TIGR02784 1087 PRLAPVFAEGSRAEVAIMGTLKEGGKQPLAVSGQIDRLAVDEDKKRVLIVDYKTNRPVPKTAEEVPPAYLRQLALYRALL 1166 (1190)
T ss_pred CHHHHCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 01320047777321345465235889851660168887773788789998621688988897652189999999999998
Q ss_pred HHCCCCCCCCCCCCCEEE
Q ss_conf 828867778557421388
Q gi|254780823|r 945 KAGSFSQIDCRKVANLFY 962 (1040)
Q Consensus 945 ~~~~~~~~~~~~~~~~~y 962 (1040)
+.- +|+..|..+..
T Consensus 1167 ~~l----YPg~~v~a~Ll 1180 (1190)
T TIGR02784 1167 RPL----YPGRAVEAALL 1180 (1190)
T ss_pred HHH----CCCCEEEEEEE
T ss_conf 865----88975999888
No 7
>PRK11069 recC exonuclease V subunit gamma; Provisional
Probab=100.00 E-value=8e-39 Score=271.08 Aligned_cols=905 Identities=13% Similarity=0.105 Sum_probs=479.4
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf 98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~ 88 (1040)
|+|..+.- ++.+++.++. .+. ... ..+| |..-+|||||+.+++||+..|+++.|..+.+ ++...+.|.++.
T Consensus 2 ~~vy~SNr-le~L~~~l~~-~l~-~~P--l~~P--f~~e~IlVqS~gm~~WL~~~LA~~~GIaAni--~Fp~P~~fiw~l 72 (1122)
T PRK11069 2 FTVYHSNQ-LDVLKALMVF-LIE-REP--LDDP--FEPEMILVQSPGMAQWLQMTLAQKFGIAANI--DFPLPATFIWDM 72 (1122)
T ss_pred CEEECCCC-HHHHHHHHHH-HHH-HCC--CCCC--CCCCEEEECCHHHHHHHHHHHHHHHCCEEEE--CCCCHHHHHHHH
T ss_conf 77871468-9999999999-998-688--9899--8774798697679999999999984906753--489979999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
...-... .....+.++..-.+-+++++....+.. ..... ..+....+..+.++||..|+++||+|..++.+|
T Consensus 73 ~~~vl~d-vp~~s~f~k~~l~Wrl~~lLp~ll~~~~f~~L~-----~yL~~d~~~~k~~qLA~riAdlFDqYlvYRPdw- 145 (1122)
T PRK11069 73 FTRVLPD-IPKESAFNKEAMTWKLMTLLPQLLERPEFTPLR-----HYLTDDEDKRKLFQLAAKIADLFDQYLVYRPEW- 145 (1122)
T ss_pred HHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9986489-822378863212899999857754396438999-----998118861269999999999999998544999-
Q ss_pred HHHHCCHH------CCHHHHHHHHHHHHHHHHHHHHHHH---HCCC--CCHHHHHHHHHHHHHHHHHC--CCCCEEEEEE
Q ss_conf 98740022------0207999999999999999999753---2488--89899999999874434422--7688099983
Q gi|254780823|r 168 DLHALKNE------KYGMWWLLAADFLKIASKYWTERLV---ELNA--SSPVGYQIALMRAEAEHLMK--GTKGPIIIAG 234 (1040)
Q Consensus 168 ~L~~l~~~------~~~~~w~~~~~fL~~~~~~~~~~l~---~~g~--~d~~~~~~~~~~~~~~~~~~--~~~~~i~v~g 234 (1040)
|..-... .....||..+ |+.... ..|. ...+......++........ .-+.+|+|+|
T Consensus 146 -L~~We~g~~~~~l~~~~~WQ~~L---------Wr~L~~~~~~~~~~~~hRa~l~~~fi~~L~~~~~~~~~LP~Ri~vFG 215 (1122)
T PRK11069 146 -LAQWEAGQLVEGLGDAQPWQAPL---------WKALVEYTHALGQPRWHRANLYQRFIETLESATTCPPGLPKRVFICG 215 (1122)
T ss_pred -HHHHHCCCCCCCCCCCCCHHHHH---------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf -99997699977887444459999---------99999876431799645899999999998447877113998389973
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH------HHH----C-CC--------CCCC------CCCC
Q ss_conf 45661679999999861489689982486321078886433------420----1-23--------3333------4446
Q gi|254780823|r 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------EKS----T-NI--------TSSN------TTYS 289 (1040)
Q Consensus 235 ~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~----~-~~--------~~~~------~~~~ 289 (1040)
.+.++|.+..+|++|+++++.+.++.++|..+|.++..... ... . .. .... ....
T Consensus 216 is~Lpp~~L~~L~aLs~~~dV~l~~~nPc~~yW~Di~d~~~l~rl~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1122)
T PRK11069 216 ISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIRDPAFLAKLLARQRRHSFEDRELPLFRDDENAEQLFNEDGEQDV 295 (1122)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCC
T ss_conf 68689999999999856561799703877777644206688877777766654300234322464202331022011024
Q ss_pred CCHHHHHHHHHHHCCCCHHHCCCCC------------CCCCCCHHHHHHHHHHHCCCCCC---CHHHCCCCCCCCCCCCC
Q ss_conf 7636899999976299966602577------------66645367777544420111221---00000012356765321
Q gi|254780823|r 290 THPQYSLAKLLDFLDIKREDVKRLG------------NVSNEMYGRSMVISKSFLPPDTS---DMRNTDILENKIPNIQK 354 (1040)
Q Consensus 290 ~~~~~~~~~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 354 (1040)
+|| ++..+|...++...+. .......-......+.+.-.... .................
T Consensus 296 gnP------LLAswGk~GRd~~~lL~~l~~~~~~~~f~~~~~~sLL~~lQ~dIL~l~~~~~~~~~~~~~~~~~~k~~l~~ 369 (1122)
T PRK11069 296 GNP------LLASWGKLGRDNIYLLSQLESSQELDAFVDIEPDNLLHNIQADILELEDHAVAGVNDEEFSRSDHKRPLDP 369 (1122)
T ss_pred CCC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 882------88774376899999998476644210368999823999999999851430124565111233223467888
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEEEEEECCCCHHHHHHHHHH-H----HCCCCCCCCCCHHHHCH
Q ss_conf 3378159955998999999999999986422----9849998026411357888435-5----13777665690035288
Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELT-R----FGINIDISAGIPLSTTL 425 (1040)
Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~avv~~d~~~~~~v~~~L~-~----~gipv~~s~g~pL~~~p 425 (1040)
...+|+++.|+|+.+|++.+.+.|....+.. ++||+|++||...+.|+..+.- . ..||+.|++.......|
T Consensus 370 ~D~Si~ih~CHS~~REVEvLhD~LL~~~~~dp~L~PrDIlVM~PDI~~YaP~I~AVFg~~~~~r~IP~~IaDr~~~~~~p 449 (1122)
T PRK11069 370 DDRSLSFHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGNAPGERYLPFAISDRRARQSHP 449 (1122)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCH
T ss_conf 99846998479859999999999999985299998311688769878876899998389987886986771755212169
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCC-------------C-CCCCHH
Q ss_conf 989999999998379997899998629654--566793899999997322321045577-------------7-811178
Q gi|254780823|r 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS-------------Y-DIMDLK 489 (1040)
Q Consensus 426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~l~ 489 (1040)
.+..++.+|++..+++....++.||..|-+ +++.++.+......-......+.+... . ....+.
T Consensus 450 l~~a~l~LL~L~~sRf~asevl~LL~~pav~~rF~l~~~dl~~l~~Wl~~aGiRWGlD~~~r~~~~lp~~~~nTW~~GL~ 529 (1122)
T PRK11069 450 VLQAFISLLSLPDSRFVAEDVLALLEVPALAARFDITEEGLRYLRQWVEESGIRWGLDDDNVRELELPATGQHTWRFGLT 529 (1122)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999846456778999999971968998849999999999999998197757787779863798534351999999
Q ss_pred HHHHHHCCCCCCCC-CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 88752201144443-45520101553432579999999899999987501100221023788999999999997236763
Q gi|254780823|r 490 SLVLDRIATQKNNT-HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 (1040)
Q Consensus 490 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 568 (1040)
..+........... ............. ..+..++...+..+ ...........++.+|...+...++......
T Consensus 530 RlLLGyam~~~~~~~~~ilP~~~~~g~~----ael~G~L~~fl~~L---~~~~~~l~~~~~~~~W~~~l~~ll~~ff~~~ 602 (1122)
T PRK11069 530 RMLLGYAMESAAGEWQSVLPYDESSGLI----AELAGHLASLLMQL---NIWRRGLAQPRPLEEWLPVCRQLLDDFFLPD 602 (1122)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9987702378877647657777556530----98987899999999---9999997599999999999999999984798
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECC
Q ss_conf 21114566577799999999866421376644778899999986224433566778773798034333566586378528
Q gi|254780823|r 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 (1040)
Q Consensus 569 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~g 648 (1040)
......+ ......+....+......-..+++.......+...+.+....... ..++|.+.++...|...|++|++.|
T Consensus 603 ~e~~~~l--~~i~~~~~~l~~~~~~a~~~~~i~l~vv~~~L~~~L~~~~~~~~F-l~G~VtFctl~PMRsIPfkvVcLLG 679 (1122)
T PRK11069 603 AETEAAL--TLIEQQWQALIEEGLDAQYGDAVPLSLLRDELAQRLDQERISQRF-LAGPVNFCTLMPMRSIPFKVVCLLG 679 (1122)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEC
T ss_conf 4158999--999999999999998468887465999999999985165644565-7897588257645688712288968
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH-HHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCC
Q ss_conf 63113456666676489678856489996678889999999-985-5985999920467--7766566537888773147
Q gi|254780823|r 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724 (1040)
Q Consensus 649 l~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~-~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~ 724 (1040)
||+|.+|......+|---....+.|-..... ..+|.|. .++ +..++++||...+ ++.+..||..+.++.....
T Consensus 680 mndg~fPR~~~~~~FDLma~~pr~GDRsrRd---dDRyLFLEaLLSAr~~LyiSyvGrsirdn~e~~PSvlV~ELldyl~ 756 (1122)
T PRK11069 680 MNDGVYPRTLPPLGFDLMSQKPKRGDRSRRD---DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVSELIEYIG 756 (1122)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9867799989999987344676689998326---5799999999951431799881313688892898387999999999
Q ss_pred CC-------CH----------HHCC-------------CCCC--C-HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31-------00----------0011-------------3653--2-2347875210-12343454755676300124677
Q gi|254780823|r 725 TD-------FF----------DNLK-------------KRGQ--C-YLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTY 770 (1040)
Q Consensus 725 ~~-------~~----------~~~~-------------~~~~--~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 770 (1040)
.. .. .... ..+. . ...|...... ....+.. ..+.....+..+
T Consensus 757 ~~~~l~~d~~~~~~~~~~~~~~~l~~~HplqpFs~~~F~~~~~~Sya~ewl~aa~~~~~~~~~f----~~~l~~~~~~~i 832 (1122)
T PRK11069 757 QSYCLPGDEALNCDESAARVKAHLTCLHTRMPFSPQNFQPGENQSYAREWLPAASQQGKAHSEF----VQPLPFTPPEEL 832 (1122)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCC
T ss_conf 8615666434574113789986450208999989777699888880289998620468788754----458998877877
Q ss_pred CCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80045776428368889763288888721-------24899889989999999999861258983478999999999996
Q gi|254780823|r 771 SFSEIKQLINDPYAVYARRILKLDFIPHF-------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 (1040)
Q Consensus 771 S~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~ 843 (1040)
+...+-.|.++|.++|+++.|++.-.... ...++..++=.+-..+|+.+.. +.+.+.....+..
T Consensus 833 ~L~~L~~F~~~P~r~f~~~rLgv~~~~~~~~~~d~EpF~ld~L~ry~l~~~lL~~~l~---~~~~~~~~~~~~a------ 903 (1122)
T PRK11069 833 TLEELQRFWRHPVRAFFQRRLKVNFRTEESELPDDEPFVLDGLSRYQLNQQLLNALVE---QDDAERLFRRFRA------ 903 (1122)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---CCCHHHHHHHHHH------
T ss_conf 8999999998299999998439616876667756799676815551899999999981---8998999999995------
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 53279866999999999999999999997324688599999656889788237999999788887998589997268534
Q gi|254780823|r 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 (1040)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~ 923 (1040)
....+....-.+++.....-+..+............ ..++.+.+ .+++|.|.++.| .++|- |-||.|+.
T Consensus 904 ~G~LP~g~~G~~~~~~~~~~~~~l~~~i~~~~~~~~----~~~i~l~~--~~~~L~G~l~~~--~~~gl---vr~r~~~l 972 (1122)
T PRK11069 904 AGKLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQ----SLEIDLAF--NGVQLTGWLPQV--QQDGL---LRWRPGLL 972 (1122)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCEEEEEC--CCEEEEEEECCC--CCCCC---EEEECCCC
T ss_conf 699999436399999999999999999997416778----74245203--986899875342--46870---89963788
Q ss_pred CCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6887984230121699999998288677785574213888606866-554345654558988899999999999999984
Q gi|254780823|r 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 (1040)
Q Consensus 924 p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1002 (1040)
.. ++ -.++.++-+++-..+.. .... .+..+.+. ...+ .+ .++....|..++.-|.
T Consensus 973 ~~-~d-----~l~~Wl~HL~~ca~g~~------~~s~-~~g~~~~~~~~~p-------l~----~~~A~~~L~~ll~~y~ 1028 (1122)
T PRK11069 973 SV-AD-----GLQLWLEHLVYCASGGE------GESR-LFGRKDGEWRFPP-------LA----AEQAKAYLSQLIEGYR 1028 (1122)
T ss_pred CH-HH-----HHHHHHHHHHHHHCCCC------CCEE-EEEECCCEEEECC-------CC----HHHHHHHHHHHHHHHH
T ss_conf 97-75-----89999999999826999------8507-9997697789778-------99----8999999999999999
Q ss_pred CCCC
Q ss_conf 8898
Q gi|254780823|r 1003 NGEQ 1006 (1040)
Q Consensus 1003 ~~~~ 1006 (1040)
.|..
T Consensus 1029 ~G~~ 1032 (1122)
T PRK11069 1029 EGMS 1032 (1122)
T ss_pred HHCC
T ss_conf 9724
No 8
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=100.00 E-value=3.9e-44 Score=305.95 Aligned_cols=770 Identities=16% Similarity=0.141 Sum_probs=474.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHH
Q ss_conf 8999899999999999975999789874002202079999999999999999997532488898999999998744-344
Q gi|254780823|r 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHL 222 (1040)
Q Consensus 144 ~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-~~~ 222 (1040)
+-..|-..|-+|..|+....+.-=+|..|...+ ...+++. +.+...+.|.+.+...... ....++... +..
T Consensus 109 ~d~~fI~QLveLYkEL~~s~LS~~dL~~L~~~~------K~~DL~~-If~~~~~~L~~~~y~~~S~-l~~f~e~v~~g~l 180 (1116)
T TIGR02774 109 QDAQFIQQLVELYKELQKSQLSILDLEELTSPE------KREDLLA-IFEVVEAVLEEGEYEQQSK-LASFIEAVKSGKL 180 (1116)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHH------HHHHHHH-HHHHHHHHHHHHCHHHCCH-HHHHHHHHHCCCC
T ss_conf 275689999999999865365244340478854------6999999-9999999874323321176-9999998742751
Q ss_pred H-CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH---HHHH
Q ss_conf 2-27688099983456616799999998614896899824863210788864334201233333444676368---9999
Q gi|254780823|r 223 M-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY---SLAK 298 (1040)
Q Consensus 223 ~-~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 298 (1040)
. ......|+||||+-++.-+..|+..|.+-|+-.++-..+ +...+.. .+.. ..-.++ -+..
T Consensus 181 ~~~L~~~vlvvDGFtRFSAEEe~lv~~L~~~g~eiiIGaYa----SqKAY~~----------~F~~-GNlY~A~v~FL~~ 245 (1116)
T TIGR02774 181 DSDLKNTVLVVDGFTRFSAEEEALVSLLHEKGVEIIIGAYA----SQKAYKS----------SFLE-GNLYQASVEFLRD 245 (1116)
T ss_pred CHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCH----HHHHHCC----------CCCC-CCHHHHHHHHHHH
T ss_conf 02018478897178774088999999973497079974622----2253315----------7766-7423421899987
Q ss_pred HHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 99762999666025776664536777754442011122100000012356765321337815995599899999999999
Q gi|254780823|r 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 (1040)
Q Consensus 299 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~l 378 (1040)
|.....+.+.....-....+........... .-+.......--......+++=.|.+.-+|++.||+-|
T Consensus 246 LA~ky~~~a~f~~s~~~~~~~f~~~S~~lEa-----------~hDFS~~~~~l~~~d~~~l~iW~c~~QKeEvE~VAr~I 314 (1116)
T TIGR02774 246 LAQKYQTKAEFISSKHESKDSFDKLSKLLEA-----------KHDFSELALDLDDKDKDALTIWECLTQKEEVEHVARSI 314 (1116)
T ss_pred HHHHCCCCCEECCCCCCCCHHHHHHHHHHCC-----------CCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4765288710214333143248999875145-----------33632010340256641345100125137889999999
Q ss_pred HHHHHHC----CCEEEEEECCCCHHH-HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
Q ss_conf 9986422----984999802641135-78884355137776656900352889899999999983799978999986296
Q gi|254780823|r 379 RMSLDEN----KKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 (1040)
Q Consensus 379 r~~~~~~----~~~~avv~~d~~~~~-~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sP 453 (1040)
|+.+.++ +++|-|+.-|...+. .+...+..+.||+..--..|++.||++.++.++.+.-.-+|..++++.|||+.
T Consensus 315 RqkL~~gsd~rYKdilvLLGD~~SYqLql~~IF~~Y~IPfYlGkaE~MA~HPL~~F~eSL~r~kRY~FR~EDvLNLLktg 394 (1116)
T TIGR02774 315 RQKLYEGSDYRYKDILVLLGDVDSYQLQLGKIFDKYDIPFYLGKAEPMAAHPLVQFIESLERIKRYRFRAEDVLNLLKTG 394 (1116)
T ss_pred HHHHHCCCCCCHHHEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 88762489630110012128777875010002221368854566560011624489999998641045078899987520
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5456-679389999999732232104557778111788875220114444345520101553432579999999899999
Q gi|254780823|r 454 LAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 (1040)
Q Consensus 454 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 532 (1040)
+.+. +.++.+.-.-. ..-. +..+.......-...... .-.+....+-.-+.+....++..+...+.
T Consensus 395 Ly~~~~~~DiD~Fe~Y------~~Ya-----DIkG~~~F~~~Ft~~~~~--~F~ddGqalykydL~~LN~~R~~ll~PL~ 461 (1116)
T TIGR02774 395 LYGDFSDSDIDKFEQY------IKYA-----DIKGLKKFKKTFTVNSSK--KFDDDGQALYKYDLDRLNELRQRLLAPLE 461 (1116)
T ss_pred CCCCCCCCCCHHHHHH------HHHH-----CCCCCHHHCCCCEECCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3555771200258998------8862-----478811115764002356--76820236777647778899999988789
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHH-----HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 98750110022102378899999999-----9997236763211145665777999999998664213766447788999
Q gi|254780823|r 533 PLVTYKTNKNSTCGNLSISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 (1040)
Q Consensus 533 ~l~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 607 (1040)
.+..-..+........ .|.-.+. .-+..+..... .....-..+.|..++.+++.+...++...+...+|..
T Consensus 462 ~Lf~S~kq~g~~ll~k---k~~~FL~~~~l~~nl~~L~~~~s-~~E~Ek~~EVWK~ftd~L~~f~~iFgqekl~L~dFLA 537 (1116)
T TIGR02774 462 ELFKSRKQLGEKLLNK---KFLLFLKEIALAENLQKLATTKS-EVEQEKEEEVWKTFTDILEQFATIFGQEKLKLDDFLA 537 (1116)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9998788778888754---66655200420689998752245-6544665316678999999987875336434999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CHHHHHHH---
Q ss_conf 99986224433566778773798034333566586378528631134566666764896788564899-96678889---
Q gi|254780823|r 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-TAEKYIGQ--- 683 (1040)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~-~~e~~~~~--- 683 (1040)
++..++.....+..+.+.+.|.|-+..-..=...+.|+..||+.+++|.-....+++++..|..++-. .+.++.+.
T Consensus 538 LL~sGM~~s~YR~vPATvDvVtvksYdLv~Pht~~FVYAlGLTq~~fPki~~n~SLltD~eR~~lN~rlaa~~~~ghfdi 617 (1116)
T TIGR02774 538 LLKSGMKASQYRTVPATVDVVTVKSYDLVEPHTKPFVYALGLTQSNFPKISQNSSLLTDEERQALNDRLAATEEDGHFDI 617 (1116)
T ss_pred HHHHHHHCCCCCCCCEEEEEEEEEECHHCCCCCCCCCEEECCCHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEC
T ss_conf 99963311466310116547876201202766555212222441026603413677787999976025400246751303
Q ss_pred ------HHHHHHHH--H--CCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCC--------------------
Q ss_conf ------99999998--5--59859999204677766566537888773147310000113--------------------
Q gi|254780823|r 684 ------AAHDFEMA--N--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-------------------- 733 (1040)
Q Consensus 684 ------~~~~~~~~--~--~a~~v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~-------------------- 733 (1040)
-.-.++++ . +..+++||.+.--.+.+...|+++.+|...+-|-.......
T Consensus 618 ~~~EN~KKNh~a~LSL~NsA~k~LvLS~p~l~NE~ed~~SpYL~eL~~~G~p~~~K~~~~~~~~~~d~G~YkaLLS~vv~ 697 (1116)
T TIGR02774 618 ASQENLKKNHYAALSLFNSATKELVLSAPQLFNESEDKLSPYLQELIDFGVPLLEKGKNSLEEDKEDIGNYKALLSRVVA 697 (1116)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 33324315689999998876554552023341478000365789999758862121024410220024226899999999
Q ss_pred -------------CCCCHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCHHHHHHCCHHHH
Q ss_conf -------------6532234787521012343454755---------------676300124677800457764283688
Q gi|254780823|r 734 -------------RGQCYLDWTRKLDYTTKQPHYKRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAV 785 (1040)
Q Consensus 734 -------------~~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~lS~S~l~~~~~cP~~~ 785 (1040)
...-|....+.++..-......-|. ....|...|.++|+|+|.+|.++-|.|
T Consensus 698 ~~~~~~~~~~t~~~~tFw~V~~R~LRkkL~~q~le~P~i~~~L~~~tls~dvl~~~yP~~~pL~LSaSaLT~FYnNqY~Y 777 (1116)
T TIGR02774 698 LNRQAEDKEMTKQDKTFWSVLVRYLRKKLDQQGLEIPTITDSLSTKTLSKDVLEVLYPEDQPLKLSASALTTFYNNQYKY 777 (1116)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 85024652356123333467655766653230665765589888433047789864678796422011321355355789
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHCCCCHHHHHHHHHHH
Q ss_conf 897632888887212489988998999999999986125898347899999999999-----653279866999999999
Q gi|254780823|r 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH-----FEKENLPPHIDIIWRHLF 860 (1040)
Q Consensus 786 ~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~ 860 (1040)
|++|||++.+.+.+. ||.+..|+.+|+|+|++.+...+ .+.-...|.+++.+. |...-.........++.+
T Consensus 778 FL~YVL~L~e~~siH--PD~R~HG~YLHrvFEr~m~~~e~--~e~Fd~~L~qaI~~t~QE~~F~~~Y~~~~Ea~yt~~iL 853 (1116)
T TIGR02774 778 FLKYVLGLEEEESIH--PDARHHGNYLHRVFERLMKDQEG--EESFDEKLNQAINETSQEEVFKALYQEDAEARYTLEIL 853 (1116)
T ss_pred HHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 998740644223578--88441343367999998416788--96178899998520265889998604364478869999
Q ss_pred HHHHHHHH------------HHHH-HC---CCCCE--E---EEEEEE--EEEEECC--CCEEEEEEEEEEEECCCC-CEE
Q ss_conf 99999999------------9997-32---46885--9---999965--6889788--237999999788887998-589
Q gi|254780823|r 861 HKISHSFL------------EHEE-KI---QSSIE--K---IFVNIP--AKMAIES--IGIHLTGFADRIDLLKSG-FVD 914 (1040)
Q Consensus 861 ~~~~~~~l------------~~~~-~~---~~~~~--~---~~~E~~--~~~~i~~--~~~~l~GrIDRid~~~dG-~~~ 914 (1040)
..+++... ..+. ++ ...|. | -.+|.. |.+.++. +.|.|+|+|||||+..|| .+-
T Consensus 854 ~Diar~TA~ILr~n~~i~v~~~e~~qhylGdkdWqktPqalka~~~~~~~~L~~~nh~R~~~v~G~iDRiDrLs~~~sLG 933 (1116)
T TIGR02774 854 LDIARSTAPILRDNSAIQVIKEEEAQHYLGDKDWQKTPQALKALEGKDNFQLQIDNHGREIKVRGIIDRIDRLSDGDSLG 933 (1116)
T ss_pred HHHHHHCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEEECEEECCCCCCEE
T ss_conf 99886122220258522047787642102540110005788860676205652056544789811660002205788214
Q ss_pred EEECCCCCCC-CHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 9972685346-887984230121699999998288677785574213888606866
Q gi|254780823|r 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 (1040)
Q Consensus 915 IvDYKTG~~p-~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 969 (1040)
|||||+|... .-.+-..|.+|||+.|-.|+++..-.+.. .+.-|++|..|..+.
T Consensus 934 vVDYKSS~~~F~~~~FYNGL~pQL~TYl~ALk~~~p~e~~-~~~FGAmYLhmqeP~ 988 (1116)
T TIGR02774 934 VVDYKSSAKKFDIAKFYNGLSPQLLTYLAALKRDKPSEIE-APIFGAMYLHMQEPK 988 (1116)
T ss_pred EEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHCCCC
T ss_conf 5660467652364110478762479999998430444467-875520212314854
No 9
>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=100.00 E-value=2.8e-37 Score=260.93 Aligned_cols=906 Identities=15% Similarity=0.127 Sum_probs=476.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf 98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~ 88 (1040)
|+|..+.- ++.+++.|++-...+ .+.+| |...+|||||+.+++||+..|+++.|..+.+ ++.+.+.|....
T Consensus 2 l~ly~SNr-le~L~~~l~~~l~~~----p~~~P--f~~e~ivVqs~gm~~WL~~~lA~~~GI~Ani--~f~~p~~fi~~l 72 (1008)
T pfam04257 2 LTLYHSNR-LEVLADLLAKLLRLE----PLADP--FEPEIILVQSPGMARWLKLELAERNGIAANI--RFPLPASFIWQL 72 (1008)
T ss_pred CEEEECCC-HHHHHHHHHHHHHHC----CCCCC--CCCCEEEECCHHHHHHHHHHHHHHHCEEEEE--CCCCHHHHHHHH
T ss_conf 77880478-999999999999858----88889--8899799797389999999999985947745--688999999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
...-...... .-+.++..-.+.+++++....... ..... ..+....+..+.+.||..|+++||+|..++.+|
T Consensus 73 ~~~~l~~~~~-~~~~~~~~L~W~i~~lL~~~~~~~~~~~l~-----~yl~~~~~~~k~~qLa~~iAdlFdqY~~yRPdw- 145 (1008)
T pfam04257 73 FRAVLGDVPE-ESPFSKESLTWRLMRLLPELLDEPEFAPLR-----HYLSDDDDQLKLYQLAEKIADLFDQYLLYRPDW- 145 (1008)
T ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH-
T ss_conf 9985489811-288975758999999988762498749999-----997118761368899999999999998417999-
Q ss_pred HHHHCCHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 98740022--------020799999999999999999975324888989-999999987443442276880999834566
Q gi|254780823|r 168 DLHALKNE--------KYGMWWLLAADFLKIASKYWTERLVELNASSPV-GYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 (1040)
Q Consensus 168 ~L~~l~~~--------~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~-~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~ 238 (1040)
|..-... .....||..+ |+......+..... .+............. .-+.+|+|+|.+.+
T Consensus 146 -l~~We~g~~~~~~~l~~~~~WQ~~L---------Wr~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~LP~ri~vFgis~L 214 (1008)
T pfam04257 146 -LAAWEQGEDGLIAKLPEDEAWQAIL---------WRALVAELPQLPQSLQHFIKALKKGQLPPA-KLPKRIFVFGISSL 214 (1008)
T ss_pred -HHHHHCCCCCCCCCCCHHHHHHHHH---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCHH-HCCCEEEEECCCCC
T ss_conf -9999769987778876415799999---------999997503477589999999864786555-29982899727858
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 1679999999861489689982486321078886433420---1233333444676368999999762999666025776
Q gi|254780823|r 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 239 ~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
++.+..+|+++++.++.+.++.++|..+|.+......... ...........+|| ++..+|...++......
T Consensus 215 pp~~l~~L~~Ls~~~dV~l~~~nP~~~yW~di~~~~~~~~~~~~~~~~~~~~~~~~p------LLa~~Gk~grd~~~lL~ 288 (1008)
T pfam04257 215 PPLYLEILQALSRHTDVHLFLLNPCREYWGDIVDRRQLLRETWLGPEDDELLLEGNP------LLASLGKQGRDFQDLLE 288 (1008)
T ss_pred CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHCCCH------HHHHHHHHHHHHHHHHH
T ss_conf 999999999985567069995278877885530778771410137750445532687------88876186699999998
Q ss_pred CC------------CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 66------------453677775444201112210000001235676532133781599559989999999999999864
Q gi|254780823|r 316 VS------------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 (1040)
Q Consensus 316 ~~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~ 383 (1040)
.. ....-......+.+. .. ...............+|+++.|+|+.+|++.+.+.|.....
T Consensus 289 ~~~~~~~~~~f~~~~~~sLL~~lQ~dIl~-l~-------~~~~~~~~~~~~~D~Si~ih~chs~~REvEvL~d~LL~~l~ 360 (1008)
T pfam04257 289 ELEESEEIDLFEDPKPDSLLHQLQNDILN-LR-------ARGEEGKLPLAPADRSLQIHSCHSPLREVEVLHDQLLALLA 360 (1008)
T ss_pred HCCCCCCHHCCCCCCCCCHHHHHHHHHHC-CC-------CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 47654301126899984699999999975-67-------76755557778899807998589879999999999999985
Q ss_pred HC----CCEEEEEECCCCHHHHHHHHH-----HHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 22----984999802641135788843-----551377766569003528898999999999837999789999862965
Q gi|254780823|r 384 EN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 (1040)
Q Consensus 384 ~~----~~~~avv~~d~~~~~~v~~~L-----~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl 454 (1040)
.. ++||+|++||...+.|+..+. ....||+.+++.......|.+..+..++++..+++....++.||..|.
T Consensus 361 ~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~pl~~~~~~LL~L~~sRf~~~evl~lL~~p~ 440 (1008)
T pfam04257 361 ADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQENPLLSAFLQLLNLPESRFTASELLDLLEVPA 440 (1008)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH
T ss_conf 09999842278887976887999999948998888477588275512131899999999844444788999999974979
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHCCCCCC----------CCC----CCHHHHHHHHCCCCCCCC-CCCCHHHCCCCCCH
Q ss_conf 45--66793899999997322321045577----------781----117888752201144443-45520101553432
Q gi|254780823|r 455 AK--FGFPEKYLSRAKNALELVALRGNKNS----------YDI----MDLKSLVLDRIATQKNNT-HVPHWQSRLSEEDK 517 (1040)
Q Consensus 455 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 517 (1040)
+. ++.++.+.-....-......+.+... ... .++...+........... ..............
T Consensus 441 v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL~RllLG~a~~~~~~~~~~i~P~~~v~~~~~ 520 (1008)
T pfam04257 441 VRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGLDRLLLGYAMPDENGIWGGILPYDDVEGLDA 520 (1008)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 89875999899999999999659555577777874279864446499999999867102777655477123477686259
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57999999989999998750110022102378899999999999723676321114566577799999999866421376
Q gi|254780823|r 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 (1040)
Q Consensus 518 ~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 597 (1040)
.+...+...+..+. ..........++.+|...+...++............ .......+...........-.
T Consensus 521 ----~~lg~l~~~~~~L~---~~~~~l~~~~~~~~W~~~l~~ll~~~f~~~~~~~~~--~~~l~~~l~~~~~~~~~a~~~ 591 (1008)
T pfam04257 521 ----ELLGKLAEFLDRLD---KWRDRLSQPRTLEEWLERLRQLLDDFFDPDEDDEWE--LQLLRKALADLLEDAIAAGFD 591 (1008)
T ss_pred ----HHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf ----99999999999999---999997289899999999999999985689202999--999999999999999856898
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
Q ss_conf 64477889999998622443356677877379803433356658637852863113456666676489678856489996
Q gi|254780823|r 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 (1040)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~ 677 (1040)
.+++...+.+.+...+.+...... -..++|.+.++...|...|++|++.|||+|.+|.......|---......|-...
T Consensus 592 ~~i~l~~v~~~l~~~l~~~~~~~~-fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fPR~~~~~~fDLm~~~pr~GDrsr 670 (1008)
T pfam04257 592 QPIPLEVVRDLLEERLSQQSGRQG-FLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFPRQDQPPGFDLMAKHPRLGDRSR 670 (1008)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCC-CCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCH
T ss_conf 865699999999998733355667-6778557716776678980148996799887988888999732233888889864
Q ss_pred HHHHHHHHHHHH-HHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCCCCC-------HHHC--CC-----------
Q ss_conf 678889999999-985-5985999920467--7766566537888773147310-------0001--13-----------
Q gi|254780823|r 678 EKYIGQAAHDFE-MAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF-------FDNL--KK----------- 733 (1040)
Q Consensus 678 e~~~~~~~~~~~-~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~~~-------~~~~--~~----------- 733 (1040)
. ...+|.|. .++ +...+++||...+ ++.+..||..+.++........ .... ..
T Consensus 671 r---~dDRylFLEaLlSAr~~LyiSyvG~s~~dn~~~~PS~lV~ELldyl~~~~~~~~~~~~~~~~~~~hplqpFs~~yF 747 (1008)
T pfam04257 671 R---DDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDEALKRLLLVVEHPLQPFSPRYF 747 (1008)
T ss_pred H---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCCHHHC
T ss_conf 5---7799999999984422089999243588989379878999999999985567763022101024469998874226
Q ss_pred -CCCC----HHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------C
Q ss_conf -6532----23478752101234345475-567630012467780045776428368889763288888721-------2
Q gi|254780823|r 734 -RGQC----YLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-------K 800 (1040)
Q Consensus 734 -~~~~----~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~ 800 (1040)
.... ...|...............+ .+.+........+|...+..|.++|.++|+++.|++...... .
T Consensus 748 ~~~~~~~Sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~L~~F~~~P~r~fl~~rL~i~~~~~~~~~~d~Ep 827 (1008)
T pfam04257 748 TEDGRLFSYDREWLAAAQALDGRAAPAQPFLPAPLPADEEKTISLDDLIRFLRNPARYFLRQRLGIRLEEEEEELEDDEP 827 (1008)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99988778019999997741157777775556789877567668999999998399999997149755766666656788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 48998899899999999998612589834789999999999965327986699999999999999999999732468859
Q gi|254780823|r 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 (1040)
Q Consensus 801 ~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 880 (1040)
..+++.++=.+..++|+.+.. +...++....+. .....+........+....+-+..+............
T Consensus 828 f~ld~L~~y~l~~~ll~~~l~---~~~~~~~~~~~~------~~G~LP~g~~g~~~~~~~~~~~~~l~~~~~~~~~~~~- 897 (1008)
T pfam04257 828 FSLDGLDRYQLKQRLLEALLE---GKDPDDLLARLR------ARGKLPPGAFGELLLEKLLERIEALAERLRELLGGPP- 897 (1008)
T ss_pred CCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHH------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 678816661899999999871---899899999999------6699999678899999999999999999998715898-
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 99996568897882379999997888879985899972685346887984230121699999998288677785574213
Q gi|254780823|r 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 (1040)
Q Consensus 881 ~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~ 960 (1040)
+.+..+.+...+++|.|.++-|- +++ .+|=||.|+.. .+++ ..+.++-+++... .+... ..
T Consensus 898 ---~~~~~v~l~~~~~~L~G~l~~v~--~~~--~lv~~~~~~~~-~k~~-----l~~Wl~hL~~~a~-----~~~~~-~t 958 (1008)
T pfam04257 898 ---EPPLEIDLEIDGVRLTGWLDGLY--PGE--GLVRWRPSKLK-AKDL-----LRLWLEHLALCAA-----GGGPG-ES 958 (1008)
T ss_pred ---CCCEEEEEECCCEEEEEEECCCC--CCC--EEEEEEECCCC-HHHH-----HHHHHHHHHHHHC-----CCCCC-EE
T ss_conf ---88835785249779999889853--787--48999705899-7789-----9999999999816-----79997-17
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8886068665543456545589888999999999999999848898
Q gi|254780823|r 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus 961 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
.+++..+. .... ... .+ .++..+.|..++..|..|..
T Consensus 959 ~~~~~~~~--~~~~--~~p-~~----~~~A~~~L~~ll~~y~~G~~ 995 (1008)
T pfam04257 959 VLVGKDGV--VVLR--FPP-IE----PDDAKEYLAKLLALYRQGLR 995 (1008)
T ss_pred EEEECCCC--CEEE--ECC-CC----HHHHHHHHHHHHHHHHHHHC
T ss_conf 99982885--0587--579-99----89999999999999999815
No 10
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=100.00 E-value=3.7e-37 Score=260.13 Aligned_cols=255 Identities=12% Similarity=0.033 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999999997532488898999999998744-------344227688099983456616799999998614896899824
Q gi|254780823|r 189 KIASKYWTERLVELNASSPVGYQIALMRAEA-------EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 (1040)
Q Consensus 189 ~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-------~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~ 261 (1040)
..+.+.+.......|..|+......+...+. ...-+.++..++||+|||+++.|..+|..+.....+..++..
T Consensus 333 ~~~~~~~~~~K~~~~~ldF~DLl~~l~~~L~~~~~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~~~~~LfmV 412 (1181)
T PRK10876 333 AEIRETVAQEKRRRGELGFDDMLSRLDSALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQPETALLLI 412 (1181)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99999999999981898879999999998646876999999985185644023204889999999999647998816998
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC----
Q ss_conf 8632107888643342012333334446763689999997629996660257766645367777544420111221----
Q gi|254780823|r 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS---- 337 (1040)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 337 (1040)
+|+.|++|.||+++.+.......... .+ ..+.............+...+......
T Consensus 413 GDpKQSIY~FRgADi~~yl~a~~~~~--~~-------------------~~L~~NfRS~~~vv~~vN~lF~~~~~~f~~~ 471 (1181)
T PRK10876 413 GDPKQAIYAFRGADIFTYMKARSEVS--AH-------------------YTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR 471 (1181)
T ss_pred ECCHHHHHHCCCCCHHHHHHHHHCCC--CE-------------------EECCCCCCCCHHHHHHHHHHHHHCCCHHHCC
T ss_conf 26436655225678999998632435--53-------------------5887688994799999999997165302104
Q ss_pred -----CHHH-CCCCCCCCCCCCCCCCCCEEE--------ECCCHHHHHHHHHHHHHHHHH-----------------HCC
Q ss_conf -----0000-001235676532133781599--------559989999999999999864-----------------229
Q gi|254780823|r 338 -----DMRN-TDILENKIPNIQKCFSDVALI--------EADNEREEAISIAIALRMSLD-----------------ENK 386 (1040)
Q Consensus 338 -----~~~~-~~~~~~~~~~~~~~~~~v~~~--------~a~~~~~Ea~~ia~~lr~~~~-----------------~~~ 386 (1040)
.... ...............+.+.+. .......++..+|..|++.+. ..+
T Consensus 472 ~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~A~~I~~lL~~~~~~~~~~~~~~~~Rpl~~ 551 (1181)
T PRK10876 472 EIPFIPVKSAGKNQALRFVVKGETQPAMKFWLMEGESCGVGDYQQTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRA 551 (1181)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 67764355444454544145788875300112687654601489999999999999998532334045414676576772
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCC-CCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 84999802641135788843551377-7665690035288989999999998379997899998629654566793899
Q gi|254780823|r 387 KKSALITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 (1040)
Q Consensus 387 ~~~avv~~d~~~~~~v~~~L~~~gip-v~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~ 464 (1040)
.||+|++|+......+..+|.+.||| |..+.+..+.+++.++.++++|+++.+|.+...+.++|+||+++++..++..
T Consensus 552 ~DIaILvRs~~~a~~i~~aL~~~gIPsv~~s~~~~~f~s~Ea~~ll~lL~al~~P~~d~~L~a~L~Spl~g~~~~eL~~ 630 (1181)
T PRK10876 552 SDISVLVRSRQEAALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWLLQAVLAPERENTLRSALATSMMGLNALDIET 630 (1181)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 1168884461469999999997699738724774111139999999999998597972999999836645979999998
No 11
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=100.00 E-value=2.9e-38 Score=267.38 Aligned_cols=597 Identities=12% Similarity=0.053 Sum_probs=334.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHH
Q ss_conf 88848983898893799999997112101123678981332220676279689999999998511888651403312577
Q gi|254780823|r 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 (1040)
Q Consensus 4 ~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~ 83 (1040)
..|-.-..-||..==++++. -+...+. ..+.+|+ ++++|+.|++||..|++++.+..+... --+.|.|+|+
T Consensus 22 ~g~~lV~AGaGSGKT~vL~~-Ria~Li~----~~gv~p~---~ILalTFTnkAA~Emk~Rl~~~l~~~~-~~~~i~TfHS 92 (722)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVH-RIAWLMQ----VENASPY---SILAVTFTNKAAAEMRHRIEQLLGTSQ-GGMWVGTFHG 92 (722)
T ss_pred CCCEEEEECCCCHHHHHHHH-HHHHHHH----CCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEHHH
T ss_conf 99879997387159999999-9999998----2999878---828984589999999999998717777-8888972999
Q ss_pred HHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6565540454334677888---8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r 84 VVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 (1040)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~ 160 (1040)
|+...++...... .+++. ++.-++..++.+++....- + . ..++ +.++...++...
T Consensus 93 fc~~iLr~~~~~~-g~~~~f~I~d~~d~~~l~k~~~~~~~~---d----~-~~~~-------------~~~~~~~i~~~k 150 (722)
T PRK11773 93 LAHRLLRAHWQDA-NLPQDFQILDSDDQLRLLKRLIKALNL---D----E-KQWP-------------PRQAQWYINGQK 150 (722)
T ss_pred HHHHHHHHHHHHH-CCCCCCEEECHHHHHHHHHHHHHHCCC---C----C-HHCC-------------HHHHHHHHHHHH
T ss_conf 9999999969983-989998787689999999999997699---8----0-0088-------------999999987776
Q ss_pred HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEEC
Q ss_conf 75999789874002202079999999999999999997532488898999999998744344-----2276880999834
Q gi|254780823|r 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGS 235 (1040)
Q Consensus 161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~ 235 (1040)
..++.|+.+...... +. ..+..+|+.|...+...|..|+......+.+.+.... -..++++|+||+|
T Consensus 151 ~~~~~p~~~~~~~~~-----~~---~~~~~iy~~Y~~~~~~~~~lDFdDll~~~~~ll~~~~~v~~~~~~rf~~IlVDEf 222 (722)
T PRK11773 151 DEGLRPQHIQAYGDP-----VE---QTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLDKPHILQHYQERFRHILVDEF 222 (722)
T ss_pred HCCCCHHHHHHCCCH-----HH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECC
T ss_conf 548998897655898-----99---9999999999999987699888999999999862199999999853979999772
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
||+++.|..+++.|++. ...++..+|++|++|.|+|+.......+...++... ...+..
T Consensus 223 QDtn~~Q~~ll~~La~~--~~nl~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~-------------------~i~L~~ 281 (722)
T PRK11773 223 QDTNAIQYAWIRLLAGD--TGNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAE-------------------TIRLEQ 281 (722)
T ss_pred CCCCHHHHHHHHHHHCC--CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHCCCCE-------------------EEECCC
T ss_conf 35999999999986178--972899967402113330563678999987447762-------------------786144
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC--CCEEEEEE
Q ss_conf 6645367777544420111221000000123567653213378159955998999999999999986422--98499980
Q gi|254780823|r 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALIT 393 (1040)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~--~~~~avv~ 393 (1040)
.......-.............. ..............+.++.+.+..+||..|+..|.+..+.+ +++|||+.
T Consensus 282 NyRSt~~Il~~an~li~~n~~r-------~~k~l~~~~~~g~~i~~~~~~~~~~Ea~~Ia~~I~~~~~~g~~~~diAIL~ 354 (722)
T PRK11773 282 NYRSTANILKAANALIANNSGR-------LGKELWTDGGDGEPISLYCAFNELDEARFVVERIKQWQDNGGALSDCAILY 354 (722)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 4166657999999998632455-------555002457789860588069978999999999999987389810125775
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 26411357888435513777665690035288989999999998379997899998629654566793899999997322
Q gi|254780823|r 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 (1040)
Q Consensus 394 ~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~ 473 (1040)
|.....+.+..+|.+.|||+.+.+|..+.+++.+++++++|+++.+|.|..++.++|.+|..+.+...............
T Consensus 355 Rtn~~~~~le~aL~~~gIPy~i~gg~~f~~r~eikd~la~Lrl~~np~d~~al~ril~~P~rgig~~~l~~l~~~a~~~~ 434 (722)
T PRK11773 355 RSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQ 434 (722)
T ss_pred ECCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 12164678999998659984874671011359999999998763485434999999828445889768999999999739
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 32104557778111788875220114444345520101553432579999999899999987501100221023788999
Q gi|254780823|r 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 (1040)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~ 553 (1040)
..+............ +..........+.+. +..+.. .....++...
T Consensus 435 ------------~sl~~~~~~~~~~~~-----------l~~~~~~~l~~f~~l----i~~l~~-------~~~~~~l~~~ 480 (722)
T PRK11773 435 ------------LTLWQACRALLQEKV-----------LAGRAASALQRFIEL----IDALAQ-------ETADMPLHEQ 480 (722)
T ss_pred ------------CCHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHH----HHHHHH-------HHCCCCHHHH
T ss_conf ------------989999999875465-----------688899999999999----999998-------7514999999
Q ss_pred HHHHHH---HHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEE
Q ss_conf 999999---9972367-632111456657779999999986642137664477889999998622443356677877379
Q gi|254780823|r 554 TKLTVT---CLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 (1040)
Q Consensus 554 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 629 (1040)
...... ....... ....... ..+....+......+........ ...+..++................++|+
T Consensus 481 ~~~i~~~~gl~~~~~~~~~~~~~~---r~~nl~el~~~~~~f~~~~~~~~--~~~L~~fL~~~~l~~~~~~~~~~~d~V~ 555 (722)
T PRK11773 481 TDRVIKDSGLRAMYEQEKGEKGQA---RIENLEELVTATRQFEYPDEDED--LTPLQAFLSHAALEAGEGQADAHEDAVQ 555 (722)
T ss_pred HHHHHHHCCHHHHHHHCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 999999657899997314653799---99999999999999864023344--2679999999986337643456788289
Q ss_pred ECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC---
Q ss_conf 803433356658637852863113456666676489678856489996678889999999985598-5999920467---
Q gi|254780823|r 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE--- 705 (1040)
Q Consensus 630 v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~--- 705 (1040)
+||+|.++|++|++||++|++||.||.....+. .+...+..+.+|+.+++|+ ++++||+...
T Consensus 556 LmTiH~AKGLEFp~Vfl~gl~eg~fP~~~s~~~--------------~~~leEERRLfYVaiTRAk~~L~ls~~~~r~~~ 621 (722)
T PRK11773 556 LMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLEE--------------GGRLEEERRLAYVGITRAMQKLTLTYAESRRLY 621 (722)
T ss_pred EEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC--------------CCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHC
T ss_conf 996120268667768980661798886334689--------------751089999999989887452488551254546
Q ss_pred -CCCCCCCCHHHHHHH
Q ss_conf -776656653788877
Q gi|254780823|r 706 -NNIPTIASRWLQRLL 720 (1040)
Q Consensus 706 -~~~~~~ps~~l~~l~ 720 (1040)
......||||+.++.
T Consensus 622 g~~~~~~pSRFl~eip 637 (722)
T PRK11773 622 GKEVYHRPSRFIREIP 637 (722)
T ss_pred CCCCCCCCCCCHHHCC
T ss_conf 7776788981466578
No 12
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-39 Score=272.77 Aligned_cols=282 Identities=15% Similarity=0.038 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH------HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--C
Q ss_conf 99999999999999753248889899999999874434------422768809998345661679999999861489--6
Q gi|254780823|r 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN--G 255 (1040)
Q Consensus 184 ~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~------~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~--~ 255 (1040)
...++..+.+.|.......+..|+......+...+... .-+..+..|+||+|||+++.|.++|..+..... .
T Consensus 330 l~~l~~~~~~~~~~~K~~r~~ldFdDl~~~~~~lL~~~~~~l~~~lr~~~~~iLIDEfQDT~~~Q~~Il~~l~~~~~~~~ 409 (1139)
T COG1074 330 LLKLLEELIERYDAEKRQRNALDFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQWRILSRLFAGFKAGN 409 (1139)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999998857789899999999998458399999998479858874034599889999999972566778
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH----HH-HHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89982486321078886433420123333344467636----89-99999762999666025776664536777754442
Q gi|254780823|r 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ----YS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 (1040)
Q Consensus 256 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1040)
..++..+|+.|++|.||+++...............+.. ++ -..++...+..........................
T Consensus 410 ~~lF~VGD~KQSIY~FRgAD~~~f~~a~~~~~~~~~~~L~~N~RS~~~vl~avN~lF~~~~~~~~~~~~~~~~~~~~~~~ 489 (1139)
T COG1074 410 RTLFLVGDPKQSIYRFRGADIFTFLEAASSEKAFARITLETNYRSTPELLNAVNALFKQAMFAYPGEIDYDPVAELGARN 489 (1139)
T ss_pred CCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
T ss_conf 50799747347655313789789999851433343420466667809999999999962554057777875165530367
Q ss_pred HCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH----------HCCCEEEEEECCCCHHH
Q ss_conf 01112210000001235676532133781599559989999999999999864----------22984999802641135
Q gi|254780823|r 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----------ENKKKSALITADRNLAR 400 (1040)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~----------~~~~~~avv~~d~~~~~ 400 (1040)
..+.....+.......-..+.......+..- ...-...++..|+.+|+.+.. ....||+|++|++..+.
T Consensus 490 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~a~~Ia~~L~~~~~~~~~~~~~r~i~~~DIaILVR~~~ea~ 568 (1139)
T COG1074 490 GSPGSVNGEPLPALKFWEEEDDWTAPENEED-EREIADLEARQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAA 568 (1139)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEECCCHHHH
T ss_conf 7766667643103554226644556678400-767999999999999999873776446778898425588954836799
Q ss_pred HHHHHHHHH-CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 788843551-377766569003528898999999999837999789999862965456679389999
Q gi|254780823|r 401 RVKLELTRF-GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 (1040)
Q Consensus 401 ~v~~~L~~~-gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~ 466 (1040)
.+..+|... +|||..+....+..+.++..++++++++.+|.+...+.++|+||+++++.+++....
T Consensus 569 ~i~~aL~~~~~ipv~~~~r~~~~~~~e~~dll~lL~~il~P~~d~~L~a~L~Spifgl~~d~L~~l~ 635 (1139)
T COG1074 569 AIERALKKAGIIPVYLSNRSSLFETLEAQDLLALLRAILNPEDDLPLAALLRSPLFGLTEDDLAALA 635 (1139)
T ss_pred HHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999998646997885786563155999999999999708543278999982756699999999984
No 13
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=100.00 E-value=7.3e-36 Score=251.65 Aligned_cols=601 Identities=12% Similarity=0.061 Sum_probs=331.1
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHH
Q ss_conf 88848983898893799999997112101123678981332220676279689999999998511888651403312577
Q gi|254780823|r 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 (1040)
Q Consensus 4 ~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~ 83 (1040)
..|-.-...||..==++++. .+...+ .. .+.+|. ++++|+.|++||..|++++.+.++....-.+.|.|+|+
T Consensus 15 ~gp~lVlAGaGSGKT~tLt~-Ria~Li-~~---~~v~P~---~ILalTFT~kAA~Emk~Rl~~~lg~~~~~~~~i~TFHS 86 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITN-KIAHLI-RG---CGYQAR---HIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHT 86 (672)
T ss_pred CCCEEEEECCCHHHHHHHHH-HHHHHH-HC---CCCCCC---CEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECHHH
T ss_conf 99989997385587999999-999998-66---898933---38544217999999999999771832137867884899
Q ss_pred HHHHHHHCCCCCC-CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6565540454334-677888-88189999999999999863100000012232111356978899989999999999997
Q gi|254780823|r 84 VVEEKFTADLLLS-YNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 (1040)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~~~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~ 161 (1040)
|+...+....... ...... ++..++...+.++...+.... -.+..++...+..+..
T Consensus 87 ~~~~iLr~~~~~lg~~~~f~i~d~~d~~~~~k~~~~~~~~~~----------------------~~~~~~~~~~i~~~k~ 144 (672)
T PRK10919 87 LGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIEDD----------------------KVLLQQLISTISNWKN 144 (672)
T ss_pred HHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCC----------------------HHHHHHHHHHHHHHHH
T ss_conf 999999998998289999836169999999999998732023----------------------4789999999999987
Q ss_pred CCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEECC
Q ss_conf 5999789874002202079999999999999999997532488898999999998744344-----22768809998345
Q gi|254780823|r 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGST 236 (1040)
Q Consensus 162 ~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~~ 236 (1040)
..++|+........+. ...+..+|..|.+.+...+..|+..........+.... -..++.+|+||+||
T Consensus 145 ~~~~~~~~~~~~~~~~-------~~~~~~~y~~Y~~~l~~~~~~DFdDll~~~~~ll~~~~~v~~~~~~r~~~IlVDEfQ 217 (672)
T PRK10919 145 DLKTPAQAAAGAKGER-------DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQ 217 (672)
T ss_pred HCCCHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCEEEEEECHH
T ss_conf 1799999987610507-------799999999999999986998879999999999852899999999754089762240
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCC
Q ss_conf 66167999999986148968998248632107888643342012333334446763689999997629996660257766
Q gi|254780823|r 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 (1040)
Q Consensus 237 ~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 316 (1040)
|+++.|.+|++.+.+. ...++..+|++|++|.|+|+.+.....+...+.... ...+...
T Consensus 218 Dtn~~Q~~ll~~L~~~--~~~l~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~-------------------~i~L~~N 276 (672)
T PRK10919 218 DTNTSQYELVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALK-------------------VIKLEQN 276 (672)
T ss_pred CCCHHHHHHHHHHHCC--CCCEEEECCCCCEEEHHHCCCHHHHHHHHHHCCCCE-------------------EEEEHHC
T ss_conf 4999999999997279--984777379662300750677689999887566774-------------------9984232
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH---HCCCEEEEEE
Q ss_conf 6453677775444201112210000001235676532133781599559989999999999999864---2298499980
Q gi|254780823|r 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALIT 393 (1040)
Q Consensus 317 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~---~~~~~~avv~ 393 (1040)
......-.............. ........ ......+.++.+.+..+|+..|+..+...+. ..++++||+.
T Consensus 277 yRS~~~Il~~an~li~~n~~~------~~k~l~~~-~~~g~~~~~~~~~~~~~Ea~~i~~~ii~~~~~~~~~~~diAIL~ 349 (672)
T PRK10919 277 YRSSGRILKAANILIANNPHV------FEKRLFSE-LGYGDELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILY 349 (672)
T ss_pred CCCCHHHHHHHHHHHHHCCCC------CCCCHHHH-CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 499778999999987618321------11001332-27898617983598799999999999999873488835579995
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 26411357888435513777665690035288989999999998379997899998629654566793899999997322
Q gi|254780823|r 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 (1040)
Q Consensus 394 ~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~ 473 (1040)
|.......+..+|.+.|||+.+.+|..+.+.+.+++++++|+++.+|.+..++++++.+|..+.+......+...
T Consensus 350 R~n~~~~~le~~L~~~~IPy~i~g~~~f~~r~eikdlla~Lr~l~np~d~~~~~ril~~p~~~i~~~~l~~l~~~----- 424 (672)
T PRK10919 350 RGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLQKLGEW----- 424 (672)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-----
T ss_conf 450322689999997799879957832312799999999999874987248999997073014799999999999-----
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 32104557778111788875220114444345520101553432579999999899999987501100221023788999
Q gi|254780823|r 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 (1040)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~ 553 (1040)
..... ..+.....+.... .............+...+ ..+....... ....+.+.
T Consensus 425 -~~~~~------~~l~~~~~~~~~~-----------~~l~~~~~~~l~~~~~~l----~~~~~~~~~~----~~~~~~~l 478 (672)
T PRK10919 425 -AMTRN------KSLFTASFDMGLS-----------QTLTGRGYESLTRFTHWL----AEIQRLAERE----PVAAVRDL 478 (672)
T ss_pred -HHHCC------CCHHHHHHHHHHH-----------HCCCHHHHHHHHHHHHHH----HHHHHHHHCC----CHHHHHHH
T ss_conf -98637------6689999875430-----------002677899999999999----9999986248----37899999
Q ss_pred HHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHH--HHHHCCCCCCCCCCCCCCE
Q ss_conf 9999--999972367632111456657779999999986642137-6644778899999--9862244335667787737
Q gi|254780823|r 554 TKLT--VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDII--TRLIDGETVKPKIEKSSTL 628 (1040)
Q Consensus 554 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~v 628 (1040)
+... ..++........... ........+............ ........+...+ ..... ........++|
T Consensus 479 ~~~~~~~~~l~~~~~~~~~~~---~r~~n~~~l~~~~~e~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~~~~~~~V 552 (672)
T PRK10919 479 IHGIDYESWLYETSPSPKAAE---MRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMME---RGESEEELDQV 552 (672)
T ss_pred HHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH---CCCCCCCCCEE
T ss_conf 998638889987367840289---999999999999999973455465220999999988776664---37656789908
Q ss_pred EECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCC
Q ss_conf 9803433356658637852863113456666676489678856489996678889999999985598-599992046777
Q gi|254780823|r 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENN 707 (1040)
Q Consensus 629 ~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~~~ 707 (1040)
++||+|.++|++|++||++|++||.+|.....+. +.-.+..+.+|+.+++|+ ++++||+.....
T Consensus 553 ~LmTiH~SKGLEf~~Vfl~gl~eg~~P~~~~~~~---------------~~~eEERRLfYVa~TRAk~~L~ls~~~~r~~ 617 (672)
T PRK10919 553 QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDE---------------DNIDEERRLAYVGITRAQKELTFTLCKERRQ 617 (672)
T ss_pred EEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHEEEECCHHHH
T ss_conf 9964886231036879996783899987656998---------------6087999999999999877665500452343
Q ss_pred ----CCCCCCHHHHHHHH
Q ss_conf ----66566537888773
Q gi|254780823|r 708 ----IPTIASRWLQRLLV 721 (1040)
Q Consensus 708 ----~~~~ps~~l~~l~~ 721 (1040)
....||+|+.++..
T Consensus 618 ~g~~~~~~pSrFl~eip~ 635 (672)
T PRK10919 618 YGELVRPEPSRFLLELPQ 635 (672)
T ss_pred CCCCCCCCCCCCHHHCCH
T ss_conf 887758999946213789
No 14
>PRK13909 putative recombination protein RecB; Provisional
Probab=100.00 E-value=6.6e-33 Score=232.27 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--------HCCCCCEEEEEECCCCCHHHHHHHHHHHHC-----
Q ss_conf 9999999999997532488898999999998744344--------227688099983456616799999998614-----
Q gi|254780823|r 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252 (1040)
Q Consensus 186 ~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~--------~~~~~~~i~v~g~~~~~~~~~~ll~al~~~----- 252 (1040)
.++..+...+.....+.|..|+......+.+.+.... -...+.+|+||+|||+++.|..+|..|.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~ldf~Dl~~~~~~lL~~~~~~~~l~~rl~~~~~~ilVDEFQDTn~~Q~~il~~L~~~~~~g~ 356 (911)
T PRK13909 277 KFLQLYKEAKNELIKKKNALDFDDISKKVYELLYESIDKDFLYFRLDSKISHILIDEFQDTSLLQYKILLPLIDEIKSGE 356 (911)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999994896889999999999745962689999986057689964002489999999999998762355
Q ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf --896899824863210788864334201233333444676368999999762999666025776664536777754442
Q gi|254780823|r 253 --PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 (1040)
Q Consensus 253 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1040)
.....++..+|+.|++|.||+++...+....... +. ....+.........-...+...
T Consensus 357 ~~~~~~~lf~VGD~KQSIY~FRgAd~~lf~~~~~~~-----------------~~---~~~~L~~NyRS~~~Iv~~~N~~ 416 (911)
T PRK13909 357 GQSKNRSFFYVGDVKQSIYRFRGGKKELFDSVAKDF-----------------SQ---IIDNLDTNYRSSPLIVNFVNEV 416 (911)
T ss_pred CCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHH-----------------HH---HHCCCCCCCCCCHHHHHHHHHH
T ss_conf 567887279973773110220788959999999860-----------------16---4302352679968999999999
Q ss_pred HCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 011122100000012356765321337815995599899999999999998642--298499980264113578884355
Q gi|254780823|r 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTR 408 (1040)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~--~~~~~avv~~d~~~~~~v~~~L~~ 408 (1040)
+....... ...........+.+.++... ..+.+..++..+...... .+.+|+|++|.......+..+|..
T Consensus 417 F~~~~~~~-------~~~~~~~~~~~g~v~v~~~~-~~~~~~~i~~~i~~l~~~g~~~~DiaILvR~~~~~~~i~~~L~~ 488 (911)
T PRK13909 417 FKEKYKNY-------PKQFQNEHKSGGYVRVVESE-DDELLEQLVQQAQFLLEHGVDPDDIAILCWTNDDALSVKEYLQE 488 (911)
T ss_pred HHHHHHCC-------CCCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 98753234-------63235545789817886688-68999999999999997798826789999456429999999997
Q ss_pred HCCCCCCCCCCHHHHCHHHHHHHHHHHHHHC
Q ss_conf 1377766569003528898999999999837
Q gi|254780823|r 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 (1040)
Q Consensus 409 ~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~ 439 (1040)
.|||+....+..+..++.++.++++++.+..
T Consensus 489 ~gIp~~~~~~~~l~~~~ev~~ll~~L~~~~~ 519 (911)
T PRK13909 489 QGIKAVTESSALLINQAEVKAILEALKYCLF 519 (911)
T ss_pred CCCCEEECCCCCHHCCHHHHHHHHHHHHHHC
T ss_conf 7998797352003226999999999999857
No 15
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=1.6e-34 Score=242.79 Aligned_cols=724 Identities=15% Similarity=0.116 Sum_probs=379.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-------------HHCCCCCEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999999999999753248889899999999874434-------------4227688099983456616799999998614
Q gi|254780823|r 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-------------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 (1040)
Q Consensus 186 ~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-------------~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~ 252 (1040)
++...+.++|.+..+..|..|+...-.-++..+... .-+..+.-|+||++||++..|.++|.-|.+-
T Consensus 359 ~~~~~f~~~f~~~KR~kn~~DF~DlEH~~L~IL~~~~~~GE~~~s~~~~~YrekF~EvlVDEYQDtN~~QE~IL~~~~~g 438 (1295)
T TIGR02785 359 QLVKDFIEAFGAEKREKNVLDFSDLEHYALQILSNENESGERKPSEAAEFYREKFKEVLVDEYQDTNLVQESILQLLKRG 438 (1295)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999976537886402768999997235888874227999999864485467514346127999999983486
Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH---------------------HHHHHHHHHC--CCCHH
Q ss_conf -89689982486321078886433420123333344467636---------------------8999999762--99966
Q gi|254780823|r 253 -PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ---------------------YSLAKLLDFL--DIKRE 308 (1040)
Q Consensus 253 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~l--~~~~~ 308 (1040)
..-.-.|=.||..|++|.||.|+|.++..+=..++..+.-. +.|..+++.- .++-+
T Consensus 439 ~~~~gNlFMVGDVKQSIY~FRqAdP~LFl~KY~~f~~eg~~~G~rI~L~~NFRSr~eVl~~TN~~F~~lMd~~vGeIdYD 518 (1295)
T TIGR02785 439 EEEEGNLFMVGDVKQSIYRFRQADPSLFLEKYKRFAQEGNEHGKRIDLAENFRSRKEVLDATNYLFKQLMDEEVGEIDYD 518 (1295)
T ss_pred CCCCCCEEEECCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEECHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 24777744434442043631025713578750121466667884400321478742155565389999728888865567
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH---
Q ss_conf 60257766645367777544420111-22100000012356765321337815995599899999999999998642---
Q gi|254780823|r 309 DVKRLGNVSNEMYGRSMVISKSFLPP-DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--- 384 (1040)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~--- 384 (1040)
.-..+. +-....... ....-..................+-..-.-.....|+..|+..||....+
T Consensus 519 ~~a~L~-----------~G~~~Y~~~~~~~~~~~~~~~~~~~~~e~~~~d~~e~~i~d~~~~E~~~~~~~Ik~li~~~~~ 587 (1295)
T TIGR02785 519 EEAQLK-----------FGAAKYPENPDKKTELLLYEKLAIEEEEEEEIDEEELEILDKAQQEATVVAERIKALIKEGFK 587 (1295)
T ss_pred HHHHHC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 245722-----------687677887750245688887754311334577655301045155678899999999746862
Q ss_pred ------------CCCEEEEEECCCC-HHHHHHHHHHHHCCCCCCC-CCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf ------------2984999802641-1357888435513777665-6900352889899999999983799978999986
Q gi|254780823|r 385 ------------NKKKSALITADRN-LARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 (1040)
Q Consensus 385 ------------~~~~~avv~~d~~-~~~~v~~~L~~~gipv~~s-~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL 450 (1040)
.++||||++|... -...+..+|...||||.+. ......++-.|+.++++|+++.||..+..|++||
T Consensus 588 vYD~~~g~~R~~~Y~DIviL~rs~~k~n~~I~~~f~~~~IPV~~nG~~~nYFq~~Ev~~ml~~L~vIDNP~QDIPLvaVL 667 (1295)
T TIGR02785 588 VYDKKTGEYRPVKYRDIVILTRSRGKWNLQIMEEFKKYGIPVFVNGDAENYFQTTEVRVMLSLLRVIDNPYQDIPLVAVL 667 (1295)
T ss_pred CHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 00321386266025567886789864337999999848998797277656078899999998731216854027889987
Q ss_pred CCCCCCCCCCHHHHHHHHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 2965456679389999999-732232104557778111788875220114444345520101553432579999999899
Q gi|254780823|r 451 KHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 (1040)
Q Consensus 451 ~sPl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 529 (1040)
|||++++..+++...++.. ..... -++...........+. .....-..+.+.+..
T Consensus 668 RSPIvgf~E~ELa~iRl~~~k~~~~--------------Y~a~~~y~~~~~~~~~----------qkt~~~~~L~~K~~~ 723 (1295)
T TIGR02785 668 RSPIVGFDEEELALIRLQNAKDSSF--------------YEAVKSYVKAEKLASS----------QKTLIEDELYEKLKR 723 (1295)
T ss_pred HCCCCCCCHHHHHHHHHCCCCCCHH--------------HHHHHHHHHCCCCCCC----------CCCCHHHHHHHHHHH
T ss_conf 3446788888899984316666407--------------9999999602788843----------355204489999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 999987501100221023788999999999---99723676321114566577799999999866421376644778899
Q gi|254780823|r 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVT---CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 (1040)
Q Consensus 530 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 606 (1040)
.+..|... +......++.+++-...+ ..+-.++-..+. ..+....+|..-...+- ....=.+-.|.
T Consensus 724 F~~~L~~w----R~~a~~~~~~~LIW~iY~~t~y~dYVGGLP~Gk----qRQANL~aLy~RA~~YE---~tsFkGLFqF~ 792 (1295)
T TIGR02785 724 FLDSLQKW----REFARTHSISELIWKIYEDTGYLDYVGGLPNGK----QRQANLYALYERARQYE---KTSFKGLFQFI 792 (1295)
T ss_pred HHHHHHHH----HHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCH----HHHHHHHHHHHHHHHHH---CCCCCHHHHHH
T ss_conf 99999999----998742785789999985325100012688846----67888999999999985---12574067889
Q ss_pred HHHHHHHCCC----CCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCC----CCCCCCCCC--CCHHHHH------
Q ss_conf 9999862244----33566778773798034333566586378528631134----566666764--8967885------
Q gi|254780823|r 607 DIITRLIDGE----TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW----PKNTAKNPF--LSRVMQS------ 670 (1040)
Q Consensus 607 ~~l~~~~~~~----~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~----P~~~~~~~~--l~~~~r~------ 670 (1040)
.+........ .....++..+.|+|||.|.++|++|++|||+||+-.-- -.....+.. ++-....
T Consensus 793 RFI~r~~e~~~Dla~a~~~~e~~naVR~MTIH~SKGLEFPvVFv~gl~k~FN~~DL~~~~ll~~~~G~G~~y~dkmetGa 872 (1295)
T TIGR02785 793 RFIERMQERQKDLAEAVAVGEAENAVRLMTIHKSKGLEFPVVFVLGLGKQFNKQDLNESYLLNRQLGLGIKYIDKMETGA 872 (1295)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 99999830230115642468876726510020766543667897158823301112014111345675178887641265
Q ss_pred ---------HCCCCC-----------HHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCC-----------HHHHH
Q ss_conf ---------648999-----------66788899999999855985-99992046777665665-----------37888
Q gi|254780823|r 671 ---------DLNLKT-----------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIAS-----------RWLQR 718 (1040)
Q Consensus 671 ---------~l~l~~-----------~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps-----------~~l~~ 718 (1040)
++.-|+ .+-..+..|..|++++||.+ ++|.....+........ +--.+
T Consensus 873 veDhYP~~~r~~ypsL~~~a~k~~~~~~llsEEMRvLYVALTRAk~KLiLVG~~kD~~~~~~kW~~~~~~~~~~L~~~~R 952 (1295)
T TIGR02785 873 VEDHYPPEERLSYPSLPKVAIKQKMKRELLSEEMRVLYVALTRAKEKLILVGSVKDEKKEVKKWLKAKDVSDWVLPENDR 952 (1295)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 13578864321357689999999999987888889999998888865435520333888999999987413770631320
Q ss_pred HHHCC------CCCC----HHHCCCCCCCHH-----------------------------------HHHHHHHCCCCCC-
Q ss_conf 77314------7310----000113653223-----------------------------------4787521012343-
Q gi|254780823|r 719 LLVLG------GTDF----FDNLKKRGQCYL-----------------------------------DWTRKLDYTTKQP- 752 (1040)
Q Consensus 719 l~~~~------~~~~----~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~- 752 (1040)
+.... ++.. ..........+. .....+.+....+
T Consensus 953 l~a~ns~ldwiG~aL~rH~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~d~~~l~~~~~~~~~~~~~~~~E~~~~~~~~~~ 1032 (1295)
T TIGR02785 953 LQARNSYLDWIGPALARHRDLKLLLDDALVSIVDELTKDPSKFAVEVIDEDQLLAEEEEEKVDEKSEQLEALADKNQSDT 1032 (1295)
T ss_pred HHEECCCCCCCCCHHEECCCHHHCCCCCCCCCHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf 01011542020201011365442021011576022067753048898766021102456530340568899986314775
Q ss_pred ----------CCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC----------------------CCCCCC
Q ss_conf ----------454755676300124677800457764283688897632888----------------------887212
Q gi|254780823|r 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD----------------------FIPHFK 800 (1040)
Q Consensus 753 ----------~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~----------------------~~~~~~ 800 (1040)
...-.-|.......+...|||.+.....+|..--...+-... .--.-.
T Consensus 1033 ~~~~~~~~~~~L~~~YP~~~at~~~a~QSVSEIKR~~~DPd~~~~~kie~~e~~~~~~~~~~~~R~~~~~~~~P~Fl~k~ 1112 (1295)
T TIGR02785 1033 DKEFREKVRERLSYDYPFKAATETPAKQSVSEIKRIFEDPDEELINKIEEAEDEGSERASVKQSRGLKISLEKPKFLTKT 1112 (1295)
T ss_pred HHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCHHHCC
T ss_conf 58999999997502053134415466555223213478787155411320476411112221002210010687423103
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 48998899899999999998612589834789999999999965327986699-99999999999999999973246885
Q gi|254780823|r 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIE 879 (1040)
Q Consensus 801 ~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 879 (1040)
-.++++++||++|.|||++--.-...........+.+++ ......+... .+. +..++..|-.....+--...
T Consensus 1113 k~~~~AEiGtAtH~vmQ~~DL~ek~~s~~~~~~~i~~lv----~~~~l~~~~~~~i~---~d~I~~Ffdt~LG~~~l~a~ 1185 (1295)
T TIGR02785 1113 KGLTAAEIGTATHLVMQHLDLSEKDLSEEELQAQIERLV----KKELLTEEVAEKIN---IDKIVAFFDTALGKQILKAK 1185 (1295)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH----HHHCCCHHHHHHHH---HHHHHHHHCCHHHHHHHHCC
T ss_conf 689863268899999963676788655899999999998----75216988874442---63233541257899998487
Q ss_pred EEEEEEEEEEEE------------CC-CCEEEEEEEEEEEECCCCCEEEEECCCCCCC---------CHHHHHCCCCCCH
Q ss_conf 999996568897------------88-2379999997888879985899972685346---------8879842301216
Q gi|254780823|r 880 KIFVNIPAKMAI------------ES-IGIHLTGFADRIDLLKSGFVDITDYKTGDNP---------KKETAQKLIDPQL 937 (1040)
Q Consensus 880 ~~~~E~~~~~~i------------~~-~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p---------~~~~~~~~~~~QL 937 (1040)
....|.+|.+.+ .. ..+.|.|.||-+....|| ++.+||||-+.- ...++..-|.-||
T Consensus 1186 ~~~~r~~f~~~L~~~~~~~d~~~~~~e~~~lv~GiIDgy~e~ed~-~~L~DYKTD~v~gkf~~~~~~~~~~lk~rY~~Q~ 1264 (1295)
T TIGR02785 1186 EVLRREPFFSMLISAEIYFDDLDEADEEKILVQGIIDGYLESEDG-LVLFDYKTDHVEGKFGSSFEGAINELKERYRGQL 1264 (1295)
T ss_pred CCCEECCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCC-EEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 862434763134588961247774356607887412222333685-7898721333426678874331247888889999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 9999999828867778557421388860686
Q gi|254780823|r 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 (1040)
Q Consensus 938 ~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~ 968 (1040)
-||.-|++. +...+|.+..++.+.++
T Consensus 1265 ~LY~~AL~~-----~~~~kV~~~yLyll~~~ 1290 (1295)
T TIGR02785 1265 KLYEKALEE-----ILKKKVKEKYLYLLDGD 1290 (1295)
T ss_pred HHHHHHHHH-----HHCCCCCEEEEEECCCC
T ss_conf 999999999-----83899723367880886
No 16
>COG1330 RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.2e-30 Score=213.27 Aligned_cols=870 Identities=13% Similarity=0.119 Sum_probs=434.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCC-CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHH
Q ss_conf 9838988937999999971121011236-789813322206762796899999999985118886514033125776565
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRY-DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~-~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~ 87 (1040)
|+|+-+.- +..++..+.+ +.+.... +++.|+ .|||+|..+++||+..|+...|..+.+. +..-++|.++
T Consensus 2 f~iyhSN~-ld~l~~ll~~--l~e~~p~~~pf~~e-----~ILV~s~gm~qWL~~~LA~~~GiaaNl~--F~~pa~Fiw~ 71 (1078)
T COG1330 2 FTLYHSNR-LDVLKALLLA--LAEDEPLDDPFEKE-----LILVQSPGMAQWLQMTLAKVLGIAANLK--FPLPASFIWQ 71 (1078)
T ss_pred CEEEECCH-HHHHHHHHHH--HHHCCCCCCCCCCC-----EEEECCCCHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf 64674232-5568999999--97446667877541-----6997680099999999998748553320--5761568999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 54045433467788888189999999999999863100000012232111356978899989999999999997599978
Q gi|254780823|r 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
....-.....+. -+.+...-.+-++.++..+.+......- ...+.........+.+|..|+++|+.+..+..+|=
T Consensus 72 ~~~~~lp~i~~~-s~f~~~~m~W~lm~llp~ll~~~~f~~l----~~yl~D~~~~~~~yqla~klAdlFdqY~vyRp~wi 146 (1078)
T COG1330 72 LFDAVLPEIPEE-SAFDKESMSWRLMALLPLLLENIEFTEL----RNYLKDDSDSRKRYQLASKLADLFDQYLVYRPDWI 146 (1078)
T ss_pred HHHHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCHHHHHH----HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 999764576434-6665101332699986988605556889----98862231144778999999999998888282788
Q ss_pred HHHHCC---HHCCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCH
Q ss_conf 987400---22020799999999999999999975324---8889899999999874434-4227688099983456616
Q gi|254780823|r 168 DLHALK---NEKYGMWWLLAADFLKIASKYWTERLVEL---NASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIP 240 (1040)
Q Consensus 168 ~L~~l~---~~~~~~~w~~~~~fL~~~~~~~~~~l~~~---g~~d~~~~~~~~~~~~~~~-~~~~~~~~i~v~g~~~~~~ 240 (1040)
.--+-+ .-....-||..+ |.+..+.. +.-................ ....-+.+++|+|+..+++
T Consensus 147 ~~We~g~~~~~~~n~~wQ~~L---------Wr~L~~~~~~~~~~h~a~l~~~f~~~l~~~~~p~~lP~RlfIfG~s~Lp~ 217 (1078)
T COG1330 147 AAWEDGLFLGLGDNEKWQAEL---------WRALVADTTELSQPHRANLHKRFIEILDSKKCPQELPKRLFIFGISALPP 217 (1078)
T ss_pred HHHCCCCCCCCCCCCCHHHHH---------HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCH
T ss_conf 874346544567664427999---------99999765420363154899999998525678878996699936665798
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH--HHHHHCCCCCCCCCCCCCHHHHH--HHHHHHCCCCHHHCCCCCCC
Q ss_conf 799999998614896899824863210788864--33420123333344467636899--99997629996660257766
Q gi|254780823|r 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSL--AKLLDFLDIKREDVKRLGNV 316 (1040)
Q Consensus 241 ~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~ 316 (1040)
...++|.+++++.+.+..+.++|..++.+.-.- +.... ..... .+..+...... ..|+..+|--.++....-..
T Consensus 218 ~yl~~l~als~~~dVhl~~~nPc~~Ywgdl~~~~~~~~l~-~r~~~-~p~~~~~~~~~~~~pLLaswGk~grd~~~~l~~ 295 (1078)
T COG1330 218 HYLQALQALSKHFDVHLLFFNPCREYWGDLIDDRALARLL-PRQRR-GPDTDNAEQYVLQNPLLASWGKLGRDFYYLLLD 295 (1078)
T ss_pred HHHHHHHHHHHHEEEEEEECCCHHHHHHHHHCHHHHHHHH-HCCCC-CCCCHHHHHHHHCCHHHHHHHHHCHHHHHHHHH
T ss_conf 9999999977423069994681798988752628888873-12666-876137888642045999867536789999984
Q ss_pred CCCCHHHHHHH---HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEE
Q ss_conf 64536777754---4420111221000000123567653213378159955998999999999999986422----9849
Q gi|254780823|r 317 SNEMYGRSMVI---SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKS 389 (1040)
Q Consensus 317 ~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~ 389 (1040)
.........+. ...+...-+................+....+++++.|+|+.+|++.+-+.|....+.+ +++|
T Consensus 296 ~e~~~~~~~F~~~~~dsLL~~iQ~dIl~l~~~~~~~~~ls~~D~Si~ih~chs~~REVevL~d~Ll~ll~~dp~L~PrdI 375 (1078)
T COG1330 296 LEIEQEIDAFKEIEPDSLLHQIQADILHLEPFSRSGRSLSTSDRSIQIHVCHSPKREVEVLHDKLLALLEEDPTLQPRDI 375 (1078)
T ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 43210255405678733599999998735778866688766898279985288316799999999999635989996137
Q ss_pred EEEECCCCHHHHHHHHHHHH-----CCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHH
Q ss_conf 99802641135788843551-----3777665690035288989999999998379997899998629654--5667938
Q gi|254780823|r 390 ALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEK 462 (1040)
Q Consensus 390 avv~~d~~~~~~v~~~L~~~-----gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~ 462 (1040)
+|+++|.+.+.++..+.-.. -+|+++|.+......|....+..++.+..+.++...++.||.+|-+ +++.+..
T Consensus 376 vVm~~dId~Y~P~I~AvFg~~~~~~~lP~~lsD~~~~~~~pll~~~~~Ll~l~~Srf~~~eiL~LL~~p~l~~rF~i~e~ 455 (1078)
T COG1330 376 VVLVPDIDSYTPYIEAVFGQAPIERHLPYSLSDRSLSQTEPLLNAFLLLLDLPESRFSAEEVLDLLDVPPLAARFGITEE 455 (1078)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHHHCCCCHH
T ss_conf 99836456616999999488876662653623543320027999999985163012769999998307777855288820
Q ss_pred HHHHHHHHHHHHHHCCCC----------CCCC----CCCHHHHHHHHCCCCCCC-CCCCCHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999973223210455----------7778----111788875220114444-3455201015534325799999998
Q gi|254780823|r 463 YLSRAKNALELVALRGNK----------NSYD----IMDLKSLVLDRIATQKNN-THVPHWQSRLSEEDKELAVLLVDHI 527 (1040)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~----------~~~~----~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 527 (1040)
....+..=.+..-.+.+. +... ..++...+.......... .....+.........+.+. .+
T Consensus 456 ~L~~l~~wv~~~girWGld~~~~~~l~~pa~~~ntW~~Gl~RmLlgyam~e~~~~wqg~l~~~~v~g~~~El~g----~L 531 (1078)
T COG1330 456 ELLTLRHWVEESGIRWGLDSTHRRELGLPATGQNTWRFGLERMLLGYAMDEDAGEWQGVLPYDEVGGLRAELAG----KL 531 (1078)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHH----HH
T ss_conf 68999999985287236574444331688300336999999998604455520122256765610012899999----99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99999987501100221023788999999999997236763211145665777999999998664213766447788999
Q gi|254780823|r 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 (1040)
Q Consensus 528 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 607 (1040)
...+..+ ...............|...+...++.......+....+.. --..............-...++......
T Consensus 532 a~fl~~L---~~~~~~l~q~~~~~~W~~~l~~Ll~~ff~~~~~~~~~l~~--i~~~~~~~~~~~~~a~~~~~l~~~~l~~ 606 (1078)
T COG1330 532 AHFLERL---SAWYRGLSQPAYLEEWREILSDLLDDFFLSDTDEEAALTI--LEFKWVPFIADSLSANYLKELPLDVLRD 606 (1078)
T ss_pred HHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999---9999986477849999999999999981689506789999--9998889998655523342158999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-HHHHHHHHHH
Q ss_conf 999862244335667787737980343335665863785286311345666667648967885648999-6678889999
Q gi|254780823|r 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQAAH 686 (1040)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~-~e~~~~~~~~ 686 (1040)
.+...+.+.....+- -.+.|.+.|+...+...|++|++.|+|+|.+|.....+.+ ++.....+.. ..+++....+
T Consensus 607 ~~~~~l~~~~~~~~f-l~G~vnfctl~PmrsiPfkvVCllGmndg~~Pr~~~~~~f---dLm~~~~~~gDrsrrddDryL 682 (1078)
T COG1330 607 ILAALLLDESISQRF-LAGSVNFCTLVPMRSIPFKVVCLLGMNDGDFPRQNSPDGF---DLMAKDPRKGDRSRRDDDRYL 682 (1078)
T ss_pred HHHHHCCCCCCCCCE-EEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH---HHHHHCCCCCCCCCCCHHHHH
T ss_conf 998741478866650-1023204543003676747788704767888865687632---566535344542243048999
Q ss_pred HHHHHHCCC-EEEEEEECCC--CCCCCCCCHHHHHHHHCCCC-----CC----HHHCCC-------------CC---CCH
Q ss_conf 999985598-5999920467--77665665378887731473-----10----000113-------------65---322
Q gi|254780823|r 687 DFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRLLVLGGT-----DF----FDNLKK-------------RG---QCY 738 (1040)
Q Consensus 687 ~~~~~~~a~-~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~-----~~----~~~~~~-------------~~---~~~ 738 (1040)
++..+.+|+ ..++||..++ ++.+..||.++.++...... .. ...... .+ ...
T Consensus 683 FLeaLisA~~~lyISYiGrsi~d~~~r~PSvll~eLld~i~~~~~~~g~~~~~~~~l~~~H~~q~Fs~~~f~~~~~~sfa 762 (1078)
T COG1330 683 FLEALISAQEQLYISYIGRSIRDNSERPPSVLLNELLDYIDQSYSLPGDEYRIAKHLLELHPLQPFSPRNFQAGELQSFA 762 (1078)
T ss_pred HHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCC
T ss_conf 99999975564578884255566887898188999999877761688647899876774089866787773764101358
Q ss_pred HHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf 3478752101234--34547556763001246778004577642836888976328888872124899---889989999
Q gi|254780823|r 739 LDWTRKLDYTTKQ--PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD---RTDRGTLFH 813 (1040)
Q Consensus 739 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~---a~~~GtlvH 813 (1040)
..|.......... .+..-..|. .....+..+--..+-.|...|.++|.+..|+++-+.......+ -..-|-..+
T Consensus 763 ~~~l~~a~~~~~~~~~~~~f~~p~-~~~~~~~el~L~~L~~F~~~Pv~~Ffq~~L~v~~~~~~~~~~d~e~f~~d~L~~~ 841 (1078)
T COG1330 763 PEWLPAAKQLQGKRLSPAEFIQPL-LPLEPPAELNLDELIRFWSHPVKHFFQQRLGVKFPDQDEEIEDSEPFELDGLSRY 841 (1078)
T ss_pred HHHHHHHHHHHCCCCCCHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHH
T ss_conf 777788898616888954534676-6689920057999999997789999998248878844443277565444540032
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
Q ss_conf 9999998612589834789999999999965327986699999----999999999999999732468859999965688
Q gi|254780823|r 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 (1040)
Q Consensus 814 ~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~ 889 (1040)
.+-+++..- ... .+++...+++ ......+....-... +..+..+...+. +..... ... +|+ .+
T Consensus 842 ~i~~~l~~~-l~~-~d~a~~~~~~----~~~g~LP~~~fg~~~~~~~~~~~~~la~~v~-~~~~~~--~~~--~~i--~~ 908 (1078)
T COG1330 842 QINERLLEG-LDE-QDDAERQLRR----RLQGDLPYGEFGVIFADQIREEAKPLANAVL-YSIEQP--GQS--VEI--DL 908 (1078)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHH----HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHCC--CCC--EEE--EC
T ss_conf 289999976-531-1257899998----7427999770689999999887899999999-875478--975--654--02
Q ss_pred EECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHH
Q ss_conf 9788237999999788887998589997268534688798423012169999999
Q gi|254780823|r 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 (1040)
Q Consensus 890 ~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~ 944 (1040)
++. +++++|.++-+- ++|. +=|++|.+..+..+ ++.+|-++.
T Consensus 909 ~i~--gv~l~G~l~~~~--~~g~---~r~~~~~~~~~~~l------~~wle~li~ 950 (1078)
T COG1330 909 TIH--GVRLKGWLLQLY--GDGL---VRWRYGKPNDKQLL------ALWLEHLIY 950 (1078)
T ss_pred CCC--CEEEEEEHHHHC--CCCC---EEEECCCCCCHHHH------HHHHHHHHH
T ss_conf 107--478875314334--7981---46405788707799------999999999
No 17
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=6.6e-35 Score=245.40 Aligned_cols=583 Identities=13% Similarity=0.086 Sum_probs=354.4
Q ss_pred CCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCC-----------------------------C--CEECCEEEEHHHHHH
Q ss_conf 898133222067627968999999999851188-----------------------------8--651403312577656
Q gi|254780823|r 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-----------------------------K--STILPIIKSLGDVVE 86 (1040)
Q Consensus 38 ~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~-----------------------------~--~~~~P~i~t~~~~~~ 86 (1040)
...|+ ++|=||+|++||++|+|++...++. . ..| |.|||+++-
T Consensus 46 ~v~P~---nILAiTFTNKAArEMkERv~~L~g~awaqqefsqrwellGkyeqkqllsrvyk~~a~~~W---isTFHS~cv 119 (811)
T TIGR01073 46 NVAPW---NILAITFTNKAAREMKERVEKLLGPAWAQQEFSQRWELLGKYEQKQLLSRVYKDVAEDIW---ISTFHSMCV 119 (811)
T ss_pred CCCCC---CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHH
T ss_conf 36985---046553220531678999999852466545776788874346678999998865214232---303899999
Q ss_pred HHHHCCCC---CCCC--CCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 55404543---3467--7888---88189999999999999863100000012232111356978899989999999999
Q gi|254780823|r 87 EKFTADLL---LSYN--LNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 (1040)
Q Consensus 87 ~~~~~~~~---~~~~--~~~~---~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~ 158 (1040)
.+++-++. +... ...- +++.+++-++..++.. +...+ .-.+.|. .+...+-.
T Consensus 120 RILRrdid~~qd~~Grr~~~~FsI~D~~Dq~~l~K~i~~~--~~dlD--------~Kkf~Pr----------~i~~~IS~ 179 (811)
T TIGR01073 120 RILRRDIDKLQDRIGRRINRNFSIIDTSDQLSLMKDIVKK--DKDLD--------PKKFEPR----------SILGTISN 179 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--HCCCC--------CCCCCCC----------CHHHHHHH
T ss_conf 9888888889876211454157611178889999999744--20477--------7778850----------12554676
Q ss_pred HHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---HHHH--CCCCCEEEEE
Q ss_conf 9975999789874002202079999999999999999997532488898999999998744---3442--2768809998
Q gi|254780823|r 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA---EHLM--KGTKGPIIIA 233 (1040)
Q Consensus 159 ~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~---~~~~--~~~~~~i~v~ 233 (1040)
+..+++.|+++..-+.. .| .+ +-+..+|+.|+..|...+.+|+.......++... +-+. ...+.+|+||
T Consensus 180 ~KN~l~~P~~~~~~a~~--~P-~~---~~va~VY~~YQ~~L~~n~~LDFDDLIm~t~~LF~~~P~VL~yYq~kF~yilvD 253 (811)
T TIGR01073 180 AKNELLSPEDFAKEATN--YP-FE---KVVAEVYAEYQKQLLRNNALDFDDLIMTTINLFQRVPDVLEYYQRKFQYILVD 253 (811)
T ss_pred HHHCCCCHHHHHHHCCC--CC-HH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 65147886899973068--87-88---89999999999998761478421277754898873179999988407467773
Q ss_pred ECCCCCHHHHHHHHHHHHC---C---------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3456616799999998614---8---------968998248632107888643342012333334446763689999997
Q gi|254780823|r 234 GSTGSIPATARLMSTVANH---P---------NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 (1040)
Q Consensus 234 g~~~~~~~~~~ll~al~~~---~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 301 (1040)
+||||+.+|..|++.|+.. . ...-++..+|-||++|.|||++-.....++.+++..-
T Consensus 254 EYQDTN~AQY~lv~~La~~~~E~~vdv~E~~~~~~nlcvVGDaDQSIY~wRGAdi~NIL~FEkDyp~rl----------- 322 (811)
T TIGR01073 254 EYQDTNRAQYTLVRLLASRGEERQVDVSEADVRFRNLCVVGDADQSIYGWRGADITNILSFEKDYPNRL----------- 322 (811)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHCCCCCC-----------
T ss_conf 344435899999998601888763455535568664478728865500120101563320100132311-----------
Q ss_pred HCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 62999666025776664536777754442011122100000012356765321337815995599899999999999998
Q gi|254780823|r 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 (1040)
Q Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~ 381 (1040)
|...-.....+..--.....-..+...+. -...................|.++.|.+.++||++|+..|.+.
T Consensus 323 -ldGetA~~i~LEQNYRST~~IL~AAN~VI-------~~N~~R~pK~LWT~~~~G~~I~~Y~A~~E~dEA~Fv~~~I~~l 394 (811)
T TIGR01073 323 -LDGETATTILLEQNYRSTKNILQAANEVI-------EHNSNRKPKNLWTENSSGEKITYYEADTERDEAQFVAGEIDKL 394 (811)
T ss_pred -CCCCCCEEEEECCCCCHHHHHHHHHHHHH-------HCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -26763117763247521467999999998-------5247888973003488996057872488101789999999998
Q ss_pred HHHC-C---CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
Q ss_conf 6422-9---84999802641135788843551377766569003528898999999999837999789999862965456
Q gi|254780823|r 382 LDEN-K---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 (1040)
Q Consensus 382 ~~~~-~---~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~ 457 (1040)
.+.. . .++||+.|...+.|.+...|-..++||++-+|..+.+.-.++++++.|+++.||.|..++.+.+.-|-=+.
T Consensus 395 ~~~~P~~~~~D~AiLYRTNAQSR~~EE~l~k~n~pY~iVGG~kFYdRkEIkD~LAYLR~~~Np~D~~sL~RIiNvPKRGi 474 (811)
T TIGR01073 395 RKNGPELKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDDDVSLERIINVPKRGI 474 (811)
T ss_pred HHCCCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
T ss_conf 74175100137038872672007899999864898066346102305779999999888617898833210123888764
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67938999999973223210455777811178887522011444434552010155343257999999989999998750
Q gi|254780823|r 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 (1040)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~ 537 (1040)
|................. +..++... ..+..+..+....+..+...
T Consensus 475 G~~s~~~~~~~a~~~~iS------------~~~Ai~~~----------------------~~i~~~~~ks~~~~~~F~~~ 520 (811)
T TIGR01073 475 GASSLEKIRSYALELNIS------------LFEAIGEI----------------------DEIGTLAAKSANALLQFAEM 520 (811)
T ss_pred CHHHHHHHHHHHHHCCCC------------HHHHHHHH----------------------HHHCCHHHHHHHHHHHHHHH
T ss_conf 467899999999860888------------88998788----------------------75023568999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHH
Q ss_conf 110022102378899999999999723676-------3211145665777999999998664213766----44778899
Q gi|254780823|r 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLD-------EHRKLPNLWFEEEGKTLSSLFSKIIETGSCI----KANAIEWI 606 (1040)
Q Consensus 538 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 606 (1040)
...+..........+. ....++..+-- ..+...+ .+...++..+...+....... .-+..+|.
T Consensus 521 ~~~l~~~~~~~~~~e~---~~~vL~~SgY~~mL~~~~t~ea~~R---lENl~E~~~v~~~Fe~~~~~Edpes~~~L~dFL 594 (811)
T TIGR01073 521 IENLRQQQEFLSVTEV---VEEVLDKSGYREMLKAEKTEEAQSR---LENLDEFLSVTKEFEDESAEEDPESIKSLVDFL 594 (811)
T ss_pred HHHHHHHHHCCCHHHH---HHHHHCCCCHHHHHHHCCCCCHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9999998600028899---9998512340789974079234556---899999999998453137766730033799999
Q ss_pred HHHHHHHCCCCCCCC--CCCC-CCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHH
Q ss_conf 999986224433566--7787-7379803433356658637852863113456666676489678856489996678889
Q gi|254780823|r 607 DIITRLIDGETVKPK--IEKS-STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 (1040)
Q Consensus 607 ~~l~~~~~~~~~~~~--~~~~-~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~ 683 (1040)
.-+.-...-..+... ...+ +.|.+||+|.|||++||+||+.||.||+||..+..+. .....-.+.
T Consensus 595 ~~~aL~~D~D~l~~~E~~~~Gdg~VtLMTLHaAKGLEFPVVFL~GlEeG~FPh~RsL~~------------~d~~~lEEE 662 (811)
T TIGR01073 595 TDLALVSDLDDLEEEEEEAEGDGAVTLMTLHAAKGLEFPVVFLIGLEEGVFPHSRSLME------------DDEKELEEE 662 (811)
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHCCCCCCCCEEEECCCCCCCCHHHHHCCC------------CCCHHHHHH
T ss_conf 87876542443365401137996486313430256777625654876556721340476------------781135678
Q ss_pred HHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHHHHCC
Q ss_conf 999999985598-5999920467----776656653788877314
Q gi|254780823|r 684 AAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRLLVLG 723 (1040)
Q Consensus 684 ~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l~~~~ 723 (1040)
.+..|+..++|. +++||.+... .-....||+|+.++....
T Consensus 663 RRLAYVGITRA~~~LyLT~A~~R~lfG~~~~~~PSRFl~EIP~~l 707 (811)
T TIGR01073 663 RRLAYVGITRAEEELYLTHATSRTLFGRIQMNPPSRFLNEIPDEL 707 (811)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHCCCHHH
T ss_conf 888866655443100010033425322336898754233089777
No 18
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=1.7e-35 Score=249.19 Aligned_cols=570 Identities=13% Similarity=0.088 Sum_probs=361.8
Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCC--C----CEECCEEEEHHHHHHHHHHCCCCCCCCCCC---CCCCHH
Q ss_conf 7898133222067627968999999999851188--8----651403312577656554045433467788---888189
Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--K----STILPIIKSLGDVVEEKFTADLLLSYNLNP---PVSNIQ 107 (1040)
Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~--~----~~~~P~i~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 107 (1040)
....|+++. =||.|++||.+++.++-..+.. + ++| |-|+|+++-..++++-.+. .+|. -+++-+
T Consensus 45 ~~~s~~SiM---AVTFTNKAA~Em~~Ri~~~~~~~~~~~l~gMW---~GTFHglaHRlLR~Hh~Da-~LP~~FQilDs~D 117 (741)
T TIGR01075 45 ENASPHSIM---AVTFTNKAAAEMRHRIEALLRKSARHQLFGMW---IGTFHGLAHRLLRAHHLDA-GLPEDFQILDSDD 117 (741)
T ss_pred CCCCCCCEE---EECHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CHHHHHHHHHHHHHHHHHC-CCCCCCCEECCHH
T ss_conf 789985356---32003478999999999986201143255532---3057789999998667534-6861242364065
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHH
Q ss_conf 99999999999986310000001223211135697889998999999999999759997898740022020799999999
Q gi|254780823|r 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 (1040)
Q Consensus 108 r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~f 187 (1040)
|+-++.+++..+.-.... +| + ..+.-.++.=..+|+-|..+...+.......|.
T Consensus 118 QlrL~KRlik~~n~~e~~--------~p------P-------rq~~W~IN~qKdeGlRp~~i~~~~~d~~~~~~~----- 171 (741)
T TIGR01075 118 QLRLIKRLIKSLNLDEKQ--------FP------P-------RQAMWYINNQKDEGLRPEHIEAFDNDPVERTWI----- 171 (741)
T ss_pred HHHHHHHHHHHCCCCCCC--------CC------C-------HHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHH-----
T ss_conf 799999999863876333--------67------1-------344201036656788832357767776899999-----
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99999999997532488898999999998744344-----2276880999834566167999999986148968998248
Q gi|254780823|r 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 (1040)
Q Consensus 188 L~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~ 262 (1040)
.+|..|+..+...|.+|++....++.+...... -..++.+|+||+||||+..|...++-|++. ...|+..+
T Consensus 172 --~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg~--~~~V~~VG 247 (741)
T TIGR01075 172 --KIYAEYQEACDRAGLVDFAELLLRAYELLRNKPHILQHYQERFKHILVDEFQDTNKIQYAWIRLLAGE--TGNVMIVG 247 (741)
T ss_pred --HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEEE
T ss_conf --99999875306377345899999999975289589999987610054323245006999999996089--96379885
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 63210788864334201233333444676368999999762999666025776664536777754442011122100000
Q gi|254780823|r 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 (1040)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 342 (1040)
|.||++|.|||+.-.....+..++.... +-...+.-+.....+..+-....-..
T Consensus 248 DDDQsIYgwRGA~veni~~fl~dF~~~~--------------------------tirLEQNYRS~~nIL~AAN~lIanN~ 301 (741)
T TIGR01075 248 DDDQSIYGWRGAQVENIQKFLKDFPIAE--------------------------TIRLEQNYRSTANILAAANALIANND 301 (741)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCC--------------------------CEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 5874201245764188899997467888--------------------------53420032217889999889985288
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC--CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 01235676532133781599559989999999999999864229--8499980264113578884355137776656900
Q gi|254780823|r 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIP 420 (1040)
Q Consensus 343 ~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~~--~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~p 420 (1040)
...+..........+.|.+..|-+.-+||.+|...+..+.+++| .++||+-|+..+.+.+..+|-+..|||.|.+|.-
T Consensus 302 ~RlGK~LwT~g~~Ge~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQSRv~Ee~L~~~~iPYriYGG~R 381 (741)
T TIGR01075 302 ERLGKNLWTDGEVGEPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQSRVLEEALLRASIPYRIYGGMR 381 (741)
T ss_pred CCCCCCEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 65675301345678702576513413789999999999986589641365663255246899999974489804307863
Q ss_pred HHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 352889899999999983799978999986296545667938999999973-2232104557778111788875220114
Q gi|254780823|r 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL-ELVALRGNKNSYDIMDLKSLVLDRIATQ 499 (1040)
Q Consensus 421 L~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1040)
+.+...+.+.++.|+++.|+.|+.++.++...|-=+.|...++..+..... ...++ ++....
T Consensus 382 FFERqEIKdALaYLRL~~Nr~DDaAfeRViNtP~RGiG~rTld~~r~~~r~~g~tLW-------------qA~~~~---- 444 (741)
T TIGR01075 382 FFERQEIKDALAYLRLIANRNDDAAFERVINTPTRGIGDRTLDEVRQAARERGLTLW-------------QAAVEL---- 444 (741)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHCCEECCCCCCCCHHHHHHHHHHHHHCCCCHH-------------HHHHHH----
T ss_conf 256788999999998714887530320300488898754679999987652074189-------------999998----
Q ss_pred CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH------HHHHHHHCCCCCCCCHH
Q ss_conf 444345520101553432579999999899999987501100221023788999999------99999723676321114
Q gi|254780823|r 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL------TVTCLQNVCLDEHRKLP 573 (1040)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~ 573 (1040)
......+.+....+.+.+..+.. .......-++...... +.+..+.-..++.....
T Consensus 445 --------------~q~~~Lagra~~al~~F~~Li~~----L~~~~~~m~L~~~~d~~~k~SgL~~~Y~~ekrgg~~~~~ 506 (741)
T TIGR01075 445 --------------LQEKVLAGRAASALVRFVELIEA----LAEETADMPLHEQTDHVLKDSGLREMYQQEKRGGEKGQA 506 (741)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf --------------76336799999999999999999----987553144688899998500367899997214643235
Q ss_pred HHHHHHHHHHHHHHHHHHHHC------CCCCCCC---HHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEE
Q ss_conf 566577799999999866421------3766447---7889999998622443356677877379803433356658637
Q gi|254780823|r 574 NLWFEEEGKTLSSLFSKIIET------GSCIKAN---AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 (1040)
Q Consensus 574 ~~~~~~~~~~l~~~~~~~~~~------~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v 644 (1040)
+.+ ...++......+... .+...-+ ......++....-+..-.......++|++||+|.|||++|+.|
T Consensus 507 R~e---NLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aaLEaGe~qa~~~~~aVqLMTlHsAKGLEFp~V 583 (741)
T TIGR01075 507 RIE---NLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAALEAGEGQADAGEDAVQLMTLHSAKGLEFPLV 583 (741)
T ss_pred HHH---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 777---88999988730464645433267776777303347788778876415001010123546666563202455752
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHH
Q ss_conf 852863113456666676489678856489996678889999999985598-5999920467----77665665378887
Q gi|254780823|r 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRL 719 (1040)
Q Consensus 645 ~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l 719 (1040)
|++|+.||.||+.... ..-|....|+| ..|+..++|+ ++++||+... ...-..||||+.++
T Consensus 584 FlvG~EeG~FPS~~Sl---------~E~GrLEEERR-----L~YVgiTRA~~kL~ityAe~RrLyGk~~y~~pSRFi~El 649 (741)
T TIGR01075 584 FLVGMEEGLFPSQMSL---------DERGRLEEERR-----LAYVGITRARKKLTITYAEARRLYGKEEYHIPSRFIREL 649 (741)
T ss_pred EEEECCCCCCCCHHCC---------CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 4662026778311210---------34869527888-----898997877566557688645663100268874114306
Q ss_pred HH
Q ss_conf 73
Q gi|254780823|r 720 LV 721 (1040)
Q Consensus 720 ~~ 721 (1040)
..
T Consensus 650 P~ 651 (741)
T TIGR01075 650 PE 651 (741)
T ss_pred CH
T ss_conf 56
No 19
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=3.1e-34 Score=240.94 Aligned_cols=574 Identities=13% Similarity=0.068 Sum_probs=339.7
Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCC-CEECCEEEEHHHHHHHHHHCCCCCC-CCCCCC-CCCHHHHHHHH
Q ss_conf 78981332220676279689999999998511888-6514033125776565540454334-677888-88189999999
Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK-STILPIIKSLGDVVEEKFTADLLLS-YNLNPP-VSNIQRLLELA 113 (1040)
Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~-~~~~P~i~t~~~~~~~~~~~~~~~~-~~~~~~-~~~~~r~~~l~ 113 (1040)
.+..|. .+.=||+|+.||++++++++..++.. +-.+ .|.|||++...+..-..... ...--. ++..++..+|.
T Consensus 44 cgY~a~---~IaAvTFTNKAA~EMkERVA~~L~~~~~~GL-~isTFH~LGL~Ii~~E~~~lG~K~nFSlFD~~D~~all~ 119 (677)
T TIGR01074 44 CGYKAK---NIAAVTFTNKAAREMKERVAKTLGKGQAKGL-TISTFHTLGLKIIRREHNALGLKSNFSLFDETDQLALLK 119 (677)
T ss_pred CCCCCC---CEEEEECCHHHHHHHHHHHHHHCCCCCCCCC-EEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 587876---1689735237779999999852265455854-475205733899999998648899964206788999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999986310000001223211135697889998999999999999759997898740022020799999999999999
Q gi|254780823|r 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 (1040)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~ 193 (1040)
+|.....+... .+-.++-..+-...+-.+.|++....+.. .|... ...+|.
T Consensus 120 eL~~~~~~~d~----------------------~~l~~~~~~IS~WKNdl~tP~qa~~~A~~----~~e~~---~A~~Y~ 170 (677)
T TIGR01074 120 ELLEGELKADK----------------------DLLDKLKSTISNWKNDLLTPEQALASARN----EREQT---FAHVYA 170 (677)
T ss_pred HHHHHHHCCCH----------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHC----HHHHH---HHHHHH
T ss_conf 87523311424----------------------89999999863654114790899998517----66899---999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH-------HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 999975324888989999999987-------4434422768809998345661679999999861489689982486321
Q gi|254780823|r 194 YWTERLVELNASSPVGYQIALMRA-------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 (1040)
Q Consensus 194 ~~~~~l~~~g~~d~~~~~~~~~~~-------~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~ 266 (1040)
.|...|..-+.+|+-..-..=+.. ...|+ .+.++++||++|||+.+|..|++-|.+. -..++..+|.||
T Consensus 171 ~Y~~~L~~yNalDFDDLI~lP~~LL~~n~~V~~~WQ--~kirYLLVDEyQDTN~sQY~L~KlLv~~--r~~FT~VGDDDQ 246 (677)
T TIGR01074 171 RYQATLRAYNALDFDDLILLPVLLLQQNEEVRNKWQ--NKIRYLLVDEYQDTNTSQYELVKLLVGD--RGNFTVVGDDDQ 246 (677)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEECCCCC
T ss_conf 999998770775422378899998514978999988--5322001102345117999998875188--853567415654
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCC
Q ss_conf 07888643342012333334446763689999997629996660257766645367777544420111221000000123
Q gi|254780823|r 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 (1040)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 346 (1040)
++|.||||.+........+++ +--.-.|-...+...+-+...-.....++ .....
T Consensus 247 SIYsWRGA~peNL~~L~~DfP-----~LKvIKLEQNYRS~~RILkaAN~LI~NNp--------------------H~F~K 301 (677)
T TIGR01074 247 SIYSWRGARPENLVLLKEDFP-----QLKVIKLEQNYRSTSRILKAANILIANNP--------------------HVFEK 301 (677)
T ss_pred CHHHHHCCCHHHHHHHHHCCC-----CCEEEEECCCCCCHHHHHHHHHHHHHCCC--------------------CCCCC
T ss_conf 243231667788989861586-----44165000066664669999767762274--------------------20000
Q ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH-----HHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 567653213378159955998999999999999986-----422984999802641135788843551377766569003
Q gi|254780823|r 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 (1040)
Q Consensus 347 ~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~-----~~~~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL 421 (1040)
..+.. -.....|+++.|-+...||..|+..|-... ..+++|-||+-|-..+.+.+.-.|....|||.+|+|.++
T Consensus 302 ~LfS~-l~~Ge~~kVi~~~NE~hEAEri~~ei~~~~~~~~~~~~Y~DyAILYRGNhQsr~lEk~L~~~rIPY~lSGGtSF 380 (677)
T TIGR01074 302 KLFSE-LGEGEKIKVIECRNEEHEAERIAGEIIAHKLIDAKKTQYKDYAILYRGNHQSRLLEKALQQNRIPYKLSGGTSF 380 (677)
T ss_pred CHHHH-HCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 00010-01698178885178631689999999999744687463010002313125458999998626898253577143
Q ss_pred HHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 52889899999999983799978999986296545667938999999973223210455777811178887522011444
Q gi|254780823|r 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 (1040)
Q Consensus 422 ~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 501 (1040)
.+.+.+.+|++.||++.||-|+.+.++.+..|-=..|...+.-+...+..... .+..+..+.
T Consensus 381 F~R~EiKDllsYlRLlvNPDDD~AFLRivn~PkReIG~aTL~KL~~~A~~~~~------------Slf~A~~~~------ 442 (677)
T TIGR01074 381 FSRAEIKDLLSYLRLLVNPDDDAAFLRIVNTPKREIGSATLEKLGEYAAEKNK------------SLFEASFEL------ 442 (677)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHCCC------------CHHHHHHHH------
T ss_conf 46403777888765313799883420012589887430568889999974079------------788998776------
Q ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 43455201015534325799999998999999875011002210237889999999999972367632111456657779
Q gi|254780823|r 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 (1040)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (1040)
.....+..........+.+++........ ..........+..-..... ++.....+... ....-...
T Consensus 443 -----gl~~~L~~r~~~~L~~F~~wl~~i~~~~~----~~e~~~~vr~l~~~i~YE~-~L~~~~~~~k~---~e~r~~NV 509 (677)
T TIGR01074 443 -----GLLQTLSGRAYEKLQRFTDWLVEIRRQAE----RSEPIEAVRSLVEDIDYEN-WLYENSESPKA---AEMRMKNV 509 (677)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHH-HHHHHCCCCHH---HHHHHHHH
T ss_conf -----48985136578889999999999999874----0385899999998613778-98852578114---67768669
Q ss_pred HHHHHHHHHHHHCCC-CCC-CCHHHHHH--HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 999999986642137-664-47788999--99986224433566778773798034333566586378528631134566
Q gi|254780823|r 582 KTLSSLFSKIIETGS-CIK-ANAIEWID--IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 (1040)
Q Consensus 582 ~~l~~~~~~~~~~~~-~~~-~~~~~~~~--~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~ 657 (1040)
..+...+........ ... ++..+... .+++.+... . ......+.|+.||.|.++|++|+.||++||+||++|..
T Consensus 510 ~~L~~W~~~~L~~~e~~~~~m~l~~~v~~ltLrd~lEr~-~-e~e~~~d~VqLMTLHASKGLEFpYVf~~G~EEGiLPH~ 587 (677)
T TIGR01074 510 EDLFSWLKEMLEGDEEDGPEMNLEQVVQRLTLRDMLERK-I-EEEEESDQVQLMTLHASKGLEFPYVFLIGMEEGILPHQ 587 (677)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-C-CCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
T ss_conf 999999999841788885234689999999875464177-6-45477752013465510245563115663466648875
Q ss_pred CCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHHHH
Q ss_conf 66676489678856489996678889999999985598-5999920467----7766566537888773
Q gi|254780823|r 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRLLV 721 (1040)
Q Consensus 658 ~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l~~ 721 (1040)
..-+- +.-.+..+..|+..++|+ ++++|++... .--...||||+.+|..
T Consensus 588 ~SIee---------------dNveEERRL~YVGITRA~~~L~~t~c~~RrqyGe~~~~~PSRFl~ELP~ 641 (677)
T TIGR01074 588 SSIEE---------------DNVEEERRLAYVGITRAKKELTFTYCKERRQYGELVRPEPSRFLDELPQ 641 (677)
T ss_pred CCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCH
T ss_conf 54446---------------7601677766443369999999999999975685205577741003797
No 20
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=99.98 E-value=5e-28 Score=200.23 Aligned_cols=406 Identities=15% Similarity=0.079 Sum_probs=273.0
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHH
Q ss_conf 88848983898893799999997112101123678981332220676279689999999998511888651403312577
Q gi|254780823|r 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 (1040)
Q Consensus 4 ~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~ 83 (1040)
..|-+..-.||..==.+++.-+ ...+.+ .+.+|+ ++++|++|+.||..|++++....+....-.+.|.|+++
T Consensus 13 ~~~llV~AgAGSGKT~~L~~Ri-~~li~~----~~~~p~---~IL~lTFT~kAA~Em~~Ri~~~l~~~~~~~~~i~T~Hs 84 (494)
T pfam00580 13 GGPLLVLAGAGTGKTRVLTERI-AYLILE----GGIDPE---EILAVTFTNKAAREMKERILKLLGKAEASELNISTFHS 84 (494)
T ss_pred CCCEEEEEECCHHHHHHHHHHH-HHHHHH----CCCCHH---HEEEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHH
T ss_conf 9997999718706899999999-999981----899974---78767028999999999999873834468867854999
Q ss_pred HHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6565540454334677888---8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r 84 VVEEKFTADLLLSYNLNPP---VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 (1040)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~ 160 (1040)
|+...+..........++. .+..+....+.+++...... . ....+.....+...+.++.
T Consensus 85 f~~~iLr~~~~~~g~~~~~f~i~d~~~~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~~~~~~i~~~k 146 (494)
T pfam00580 85 FCLRILRKYANRIGDLLPNFSILDELDQLALLKEILKKDRLD-------L-----------DSKLLRPLLELKELISKAK 146 (494)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-------C-----------CHHHCCHHHHHHHHHHHHH
T ss_conf 999999998998377777882166788999999999874136-------6-----------8443368999999999998
Q ss_pred HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHCCCCCEEEEEEC
Q ss_conf 7599978987400220207999999999999999999753248889899999999874434-----42276880999834
Q gi|254780823|r 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGS 235 (1040)
Q Consensus 161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-----~~~~~~~~i~v~g~ 235 (1040)
..++.++++...... ....+.. +..+|+.|...+...+..|+......+.+.+... .-..++.+|+||+|
T Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~y~~~~~~~~~~Df~Dll~~~~~lL~~~~~~~~~~~~r~~~ilVDEf 221 (494)
T pfam00580 147 NELLSPEELQQASYA-ATPRDKL----AAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPELLEAYRERFKYILVDEF 221 (494)
T ss_pred HCCCCHHHHHHHCCC-CCHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEECHHH
T ss_conf 759999999752413-5758999----99999999999998699898999999999973199999999860726540343
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
||+++.|..+++.|... +..++..+|++|++|.|||+++.....+...+... ....+..
T Consensus 222 QDtn~~Q~~il~~L~~~--~~~l~~VGD~~QSIY~FRGAd~~~~~~f~~~~~~~-------------------~~i~L~~ 280 (494)
T pfam00580 222 QDTNPIQYELLKLLAGG--HPNLFLVGDPDQSIYGFRGADIENILKFEKDFPAA-------------------KVITLEQ 280 (494)
T ss_pred CCCHHHHHHHHHHHHCC--CCEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCC-------------------CEEECCC
T ss_conf 02649999999998658--98399981797144201799969999999866656-------------------6725889
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEEEE
Q ss_conf 6645367777544420111221000000123567653213378159955998999999999999986422----984999
Q gi|254780823|r 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391 (1040)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~av 391 (1040)
.......-.......+...... ...............+.+..+.+..+|+..||..|.+.+... ++++||
T Consensus 281 NyRS~~~Il~~aN~l~~~~~~~------~~~~~l~~~~~~~~~v~~~~~~~~~~Ea~~ia~~I~~l~~~~~~~~~~DiAI 354 (494)
T pfam00580 281 NYRSTPEILNAANKLISNNTAR------KEKRLLWSQKGSGEKVTVYEAETEQEEAEFIADEIKALHKSGAAIPFGDIAV 354 (494)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC------CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 9898878999999999726022------4454354557889960798379999999999999999987799988565689
Q ss_pred EECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 8026411357888435513777665690035288989999999998379997899998629654566793899999
Q gi|254780823|r 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 (1040)
Q Consensus 392 v~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~ 467 (1040)
++|.......+..+|.+.|||+.+.+|..+.+++.+++++++|+++.+|.|..+++++|++|.++++...+..+..
T Consensus 355 L~R~~~~~~~l~~~L~~~gIP~~~~~~~~f~~~~ev~dlla~Lr~i~np~d~~al~rvl~~P~~g~~~~~l~~l~~ 430 (494)
T pfam00580 355 LVRSNSQSRAIEEALLKAGIPYKILGGLSFFDRKEIKDLLALLRLIDNPKDDLALLRILNTPKRGIGPTTLDKLRN 430 (494)
T ss_pred EEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9825231899999999779998998984200189999999999987698868999999814878989999999999
No 21
>COG2887 RecB family exonuclease [DNA replication, recombination, and repair]
Probab=99.98 E-value=9.5e-31 Score=218.11 Aligned_cols=262 Identities=27% Similarity=0.396 Sum_probs=200.6
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78004577642836888976328888872124899889989999999999861258983478999999999996532798
Q gi|254780823|r 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 (1040)
Q Consensus 770 lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1040)
+|+|+++++.+|||.||+++++++.+.+...+.+.+..+||++|++++.+... ...........+.......+......
T Consensus 1 ls~s~~~~l~r~p~~~~a~~i~~l~~~~~~~e~~~~~~~g~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (269)
T COG2887 1 LSVSRAEALRRCPYLFYARRILALPPLGTRAEEPEAAVRGTLLHAILEALVGE-RYHAAAAALAKLAWLLRKELAEAELP 79 (269)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96535756255851699998635377875100244243354799999988631-24432031677765555544310233
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEEEE-EEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCH
Q ss_conf 66999999999999999999--99732468859999965-6889788237999999788887998589997268534688
Q gi|254780823|r 850 PHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIP-AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 (1040)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~E~~-~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~ 926 (1040)
......|+.++..+...++. |+.++...+.....|.. ++..|.++ ++|+|+|||||.+++|++.|||||||++|+.
T Consensus 80 ~~~~~~~~~r~~~~~~~~~~~~~e~~r~~~~~~~~~e~~~~~~~i~~~-i~l~G~aDRid~~~~g~i~ilDYKTG~~p~~ 158 (269)
T COG2887 80 GYTDAEWLDRLRARARAFLVYDWERERGTAFHAWLEEERGAELLIDGG-IRLRGRADRIDKDADGELEILDYKTGKSPSA 158 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEECCC-CEECCEEEECCCCCCCCEEEEEEECCCCCCH
T ss_conf 346620348899866545345687616773336655522304673034-0221143000247888468998634888624
Q ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79842301216999999982886777855742138886068665543456545589888999999999999999848898
Q gi|254780823|r 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus 927 ~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
++.....++||.+|++++..|+|. ...++++.|+.+.......................+....+.+++..+.....
T Consensus 159 a~~~~~~~~ql~~~~~~l~~~~~~---~~~p~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~ 235 (269)
T COG2887 159 ARAPAAVSPQLALEALALIEGRFR---GVEPGQLRLVYLRKSGRVGEAPDNREQLPQLALAREALAELAELLAGLEVRPR 235 (269)
T ss_pred HHCHHCCCHHHHHHHHHHHHCCCC---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 332111053468889988714556---66788724888657776677850666540057799999999875345543445
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 855554510156689865442014431021
Q gi|254780823|r 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 (1040)
Q Consensus 1007 ~f~~~~~~~~~~~~~~~y~~l~r~~ew~~~ 1036 (1040)
+|..++.+.+....-..|+++.|.-+|+.-
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T COG2887 236 GYSSRCDLCPHQDLCPAYGGLARLLEGSAD 265 (269)
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 621002444444557764446655778888
No 22
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.7e-25 Score=182.32 Aligned_cols=606 Identities=14% Similarity=0.072 Sum_probs=330.0
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHH
Q ss_conf 84898389889379999999711210112367898133222067627968999999999851188865140331257765
Q gi|254780823|r 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 (1040)
Q Consensus 6 ~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~ 85 (1040)
|.+..--||..=-+.+..-+ +..+ ...+.+|. ++++++.|++||..+++++....+....-.+.+.|+|+++
T Consensus 17 p~lV~AGaGsGKT~vlt~Ri-a~li----~~~~v~p~---~Il~vTFTnkAA~em~~Rl~~~~~~~~~~~~~v~TfHs~~ 88 (655)
T COG0210 17 PLLVLAGAGSGKTRVLTERI-AYLI----AAGGVDPE---QILAITFTNKAAAEMRERLLKLLGLPAAEGLTVGTFHSFA 88 (655)
T ss_pred CEEEEECCCCCCHHHHHHHH-HHHH----HCCCCCHH---HEEEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHH
T ss_conf 86999579986189999999-9998----73895757---7177896769999999999987385544653999834677
Q ss_pred HHHHHCCCCCCC-CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 655404543346-77-8888818999999999999986310000001223211135697889998999999999999759
Q gi|254780823|r 86 EEKFTADLLLSY-NL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 (1040)
Q Consensus 86 ~~~~~~~~~~~~-~~-~~~~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~ 163 (1040)
...+........ .. -..++..+....+.++.... ...+ . .......+...+......+
T Consensus 89 ~~~lr~~~~~~~~~~~f~i~d~~d~~~~~~~~~~~~--~~~~----~--------------~~~~~~~~~~~i~~~k~~~ 148 (655)
T COG0210 89 LRILRRHGERLGLNANFTILDSDDQLALIKELLRRE--LNLD----D--------------KELLPREALRYISEAKNAL 148 (655)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCC----C--------------CCHHHHHHHHHHHHHHHCC
T ss_conf 999999788548666871105200789999998654--1664----1--------------1003899999889998726
Q ss_pred CCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCCCEEEEEECCCC
Q ss_conf 99789874002202079999999999999999997532488898999999998744344-----2276880999834566
Q gi|254780823|r 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGS 238 (1040)
Q Consensus 164 ~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~-----~~~~~~~i~v~g~~~~ 238 (1040)
+.+..............| ...+..+|..|...+...+..|+............... -..++++|+||+|||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~---~~~~~~~y~~Y~~~~~~~~~~df~dll~~~~~ll~~~~~v~~~~~~rf~~iLvDE~QDt 225 (655)
T COG0210 149 LSPLEASALLLAAIKSEA---EKKLAELYEEYQELLRLNNALDFDDLLLLALRLLEENPEVLEALQARFRYILVDEFQDT 225 (655)
T ss_pred CCHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 782420155540134268---99999999999999876585368999999998723484789999956898987877785
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCC
Q ss_conf 16799999998614896899824863210788864334201233333444676368999999762999666025776664
Q gi|254780823|r 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 (1040)
Q Consensus 239 ~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 318 (1040)
++.|..+++.++.. ...++..+|++++++.|+++.......+...+.. .....+.....
T Consensus 226 n~~Q~~ll~~la~~--~~~l~~VGD~dQsIY~frGA~~~ni~~f~~df~~-------------------~~~i~Le~nyR 284 (655)
T COG0210 226 NPLQYELLKLLAGN--AANLFVVGDDDQSIYGFRGADPENILDFEKDFPA-------------------AKVIKLEQNYR 284 (655)
T ss_pred CHHHHHHHHHHHCC--CCCEEEECCCCCCEEEECCCCCHHHHHHHHHCCC-------------------CCEEECCCCCC
T ss_conf 18799999998448--7757998589873676778783678978763565-------------------54676042448
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEEECC
Q ss_conf 5367777544420111221000000123567653213378159955998999999999999986422---9849998026
Q gi|254780823|r 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITAD 395 (1040)
Q Consensus 319 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv~~d 395 (1040)
....-........... ..................+.++.+.+..+|+..|+..|.+..... +.+++|+.+.
T Consensus 285 St~~Il~~An~~i~~n------~~r~~k~l~~~~~~~~~~~~~~~~~~~~~ea~~i~~~I~~l~~~~~~~~~d~aiL~R~ 358 (655)
T COG0210 285 STPNILAAANKVIANN------KKRQAKTLRTEVEGSGEKVVLLLANDEEDEARWIASEIDALIEIGKVNYSDIAILYRT 358 (655)
T ss_pred CHHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 8899999999998718------6523342110235677885698678817789999999999998268880307888615
Q ss_pred CCHHHHHHHHHHHHCCCCCCC-CCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 411357888435513777665-6900352889899999999983799978999986296545667938999999973223
Q gi|254780823|r 396 RNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 (1040)
Q Consensus 396 ~~~~~~v~~~L~~~gipv~~s-~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~ 474 (1040)
....+.+...|.+.+||+.+. +|..+.+...+..+++.+++..++.+..++.+++..|.-+.+................
T Consensus 359 n~~s~~~e~~l~~~~ipy~i~~gg~~f~~r~eikd~l~~l~~~~n~~d~~~~~r~~~~~~r~ig~~~~~~~~~~~~~~~~ 438 (655)
T COG0210 359 NAQSRLIEEALRAAGIPYRIVIGGTSFFERKEIKDLLAYLRLVLNPDDDAAFLRILNLPKRGIGDATLKKLLELARERNL 438 (655)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 66778899998662897477537076651699999999973234767578899985133443206689999999865121
Q ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 21045577781117888752201144443455201015534325799999998999999875011002210237889999
Q gi|254780823|r 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 (1040)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~ 554 (1040)
.. +..+...... ..+..........+. ..+..+...... .....+.
T Consensus 439 ~~--------~~~l~~~~~~---------------~~l~~~~~~~~~~f~----~~~~~~~~~~~~-------~~~~~~~ 484 (655)
T COG0210 439 SL--------LEALKALLSF---------------IRLSERGLALLLDFA----ELIEELREAILL-------STALELI 484 (655)
T ss_pred HH--------HHHHHHHHHH---------------CCCCHHHHHHHHHHH----HHHHHHHHHHCC-------CCHHHHH
T ss_conf 37--------8988987741---------------435477898999999----999999873022-------3399999
Q ss_pred HHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 99999---997236763211145665777999999998664213766447788999999862244335667787737980
Q gi|254780823|r 555 KLTVT---CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 (1040)
Q Consensus 555 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~ 631 (1040)
..... ..+...... ..............+......+... ......+...+............. ..+.|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~nl~el~~~~~~~~~~----~~~l~~fl~~~~~~~~~~~~~~~~-~~~~V~lm 558 (655)
T COG0210 485 RELLEALGYLEALLEAG-SLVAAEDRLENLEELLDVLKRYAEP----RESLRAFLSELSLLANDEEEEEPD-EDGQVNLM 558 (655)
T ss_pred HHHHHHCCHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCHHHHCCCC-CCCCEEEE
T ss_conf 99987505689998633-5014577887899999999874124----507999999988611033310224-57846997
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECC----CC
Q ss_conf 3433356658637852863113456666676489678856489996678889999999985598-599992046----77
Q gi|254780823|r 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLR----EN 706 (1040)
Q Consensus 632 ~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~----~~ 706 (1040)
|+|.++|++|++||++|+++|.+|.... ...... ...+..+..|+.+++|+ .+++|++.. ..
T Consensus 559 T~H~aKGlEf~~Vfl~g~~eg~~P~~~~------------~~~~~~-~~eEERRL~YVaiTRA~~~L~~t~~~~~~~~~~ 625 (655)
T COG0210 559 TIHAAKGLEFPYVFLVGLEEGLFPADRS------------LDEGDE-PLEEERRLLYVAITRAKKKLYLTYAASRKLWGK 625 (655)
T ss_pred EHHHHCCCCCCEEEEECCCCCCCCCCHH------------CCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2013137768756785553688987000------------006787-765588899998788876553323655553265
Q ss_pred CCCCCCCHHHHHHHHC
Q ss_conf 7665665378887731
Q gi|254780823|r 707 NIPTIASRWLQRLLVL 722 (1040)
Q Consensus 707 ~~~~~ps~~l~~l~~~ 722 (1040)
.....||+|+.++...
T Consensus 626 ~~~~~~srFi~e~~~~ 641 (655)
T COG0210 626 EVEEEPSRFVSELPAE 641 (655)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 2344735787750488
No 23
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=99.97 E-value=7.6e-26 Score=185.94 Aligned_cols=731 Identities=13% Similarity=0.063 Sum_probs=323.1
Q ss_pred HHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHH-H-HHH---HHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--C
Q ss_conf 999999999999753---24888989999999987-4-434---422768809998345661679999999861489--6
Q gi|254780823|r 186 DFLKIASKYWTERLV---ELNASSPVGYQIALMRA-E-AEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN--G 255 (1040)
Q Consensus 186 ~fL~~~~~~~~~~l~---~~g~~d~~~~~~~~~~~-~-~~~---~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~--~ 255 (1040)
.+|..+.+.+..... +.|+.|.......++.. . .+. .-+.++..|+||+||||++.|.+++..+....+ .
T Consensus 376 ~~l~~v~~~L~~~k~~~~~~gfddll~~L~~aL~~n~~~~~l~~~ir~~y~~aLIDEFQDTD~~Qy~IF~~lf~~~~~~~ 455 (1324)
T TIGR00609 376 RLLKEVQEELKKEKKRRREIGFDDLLSRLEKALKSNEEGEKLAQAIREQYPIALIDEFQDTDPQQYRIFSKLFIAQKDFE 455 (1324)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999985231047833689999999740867868999998329678872433688789999999830788644
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCHH-----HHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 899824863210788864334201-23333344467636-----899999976299966602577666453677775444
Q gi|254780823|r 256 AIVLPGLDCHIPTAIWNTITEKST-NITSSNTTYSTHPQ-----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 (1040)
Q Consensus 256 ~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1040)
..++.-+||.|.+|.||+++-+.- ....+......|.. +.-..+...++.-...... ..+.+++..
T Consensus 456 ~~LfLIGDPKQaIY~FRgADI~tYnL~Ak~~~~~d~ry~L~~N~RS~~~Lv~s~N~lF~~~~~--------~~~~pF~~~ 527 (1324)
T TIGR00609 456 TALFLIGDPKQAIYSFRGADIFTYNLQAKEKADEDARYTLDTNWRSTPALVESINKLFSQAEN--------NAIAPFLFK 527 (1324)
T ss_pred CCCEEECCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCC--------CCCCCCCCC
T ss_conf 353243173177764305761135589751266234004534565738899999998411235--------765542107
Q ss_pred H---HCCC-CCCCHHHCCCCCCCCCCCCCCCCCCEEEECC----------CHHHH----HHHHHHHHHHHHH--------
Q ss_conf 2---0111-2210000001235676532133781599559----------98999----9999999999864--------
Q gi|254780823|r 330 S---FLPP-DTSDMRNTDILENKIPNIQKCFSDVALIEAD----------NEREE----AISIAIALRMSLD-------- 383 (1040)
Q Consensus 330 ~---~~~a-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~----------~~~~E----a~~ia~~lr~~~~-------- 383 (1040)
. ..|. ................-.......+++.... ..+.- |..|+.||-.+..
T Consensus 528 ~~GlenPi~f~~v~~~~~n~~~~~~~~~~~~~p~~~~~~~V~~~~~G~~~~~~~~~~~~a~~I~~wL~~~~~~~~~~~~~ 607 (1324)
T TIGR00609 528 NEGLENPIPFIPVLAAQKNSKGSFVINGQEQPPIHFFVTEVEKKELGVDDYRQTIAEKCAREIADWLAAAALGLAKFKAK 607 (1324)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88877777762356400012456443777777522101123200036038899999986999999999999998740000
Q ss_pred HCC------CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC-HHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 229------849998026411357888435513777665690-0352889899999999983799978999986296545
Q gi|254780823|r 384 ENK------KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 (1040)
Q Consensus 384 ~~~------~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~-pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~ 456 (1040)
..| .+|||+|++...+..+..+|...+||..-+... .+..|.....+..+|+++..|.....+-..|.|-+++
T Consensus 608 ~~g~~~~~~~dIaVLVr~~~ea~~~~~aL~~~~I~s~y~s~k~~vf~t~ea~~l~~lL~a~l~P~~~~~l~~~L~s~~f~ 687 (1324)
T TIGR00609 608 EEGIRPLRAGDIAVLVRGRKEANQVRKALKKAQIPSVYLSDKDSVFATEEAQELLLLLEALLEPEREGTLRAALASRIFG 687 (1324)
T ss_pred CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHCCCCCHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf 26723555016048427814489999999860141022326441104865899999999850824688899999978746
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66793899999997322321045577781117888752201144443455201015534325799999998999999875
Q gi|254780823|r 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 (1040)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~ 536 (1040)
.........-- ....+ -.......... +....-.....+++.+.. ...
T Consensus 688 ~~~~~~~~~~~---qDkiC-----------Lieefieniiv--------------LLek~e~~~~~~~~~f~~----~~~ 735 (1324)
T TIGR00609 688 LSALELETLNQ---QDKIC-----------LIEEFIENIIV--------------LLEKDEKEWERVVEKFRE----YRD 735 (1324)
T ss_pred CCHHHHHHHHC---CCCCH-----------HHHHHHHHHHH--------------HHCCCHHHHHHHHHHHHH----HHH
T ss_conf 78899999732---36420-----------48888746644--------------533675789999999999----999
Q ss_pred HHHHHHHHHCCCCHHHHHH---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0110022102378899999---9999997236763211145665777999999998664213766447788999999862
Q gi|254780823|r 537 YKTNKNSTCGNLSISDWTK---LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 (1040)
Q Consensus 537 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 613 (1040)
.+....-....+.+..+.. --..++.. .+++. .......+...+..........-.....+......--
T Consensus 736 ~w~~~G~l~~~~~~~~~~~~~~~~~~LL~~--~~Ger------~lt~l~~l~elL~~~~~~~~~~~~l~r~l~~~i~~~~ 807 (1324)
T TIGR00609 736 IWRKRGVLAMFQRLMLEAKNKTIGERLLSQ--NGGER------SLTDLLHLAELLQEAAHQEENKLSLLRWLEKQISKEE 807 (1324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCH------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
T ss_conf 999863899999999986102365453202--57742------2665999999999987502012310067898266888
Q ss_pred C---CCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCH---------------HHHHHCCCC
Q ss_conf 2---4433566778773798034333566586378528631134566666764896---------------788564899
Q gi|254780823|r 614 D---GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR---------------VMQSDLNLK 675 (1040)
Q Consensus 614 ~---~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~---------------~~r~~l~l~ 675 (1040)
. ......-....+.|.|||+|.++|+++|.||+++..+-.--.......++-+ ..+...+..
T Consensus 808 ~~~~~e~~~rl~sD~~~vkI~TiHkSKGLeYpiV~lPf~~~~~~~~~~~~~~~Yh~~~~~~~~~d~~~~~~~~~~~~~~~ 887 (1324)
T TIGR00609 808 EEELEEEIIRLESDAELVKIVTIHKSKGLEYPIVFLPFITDAKKSDDSSKLAIYHDDGSRKLLLDLNKLEEQRRTVKKLA 887 (1324)
T ss_pred CCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 88731334063461144147788741245887020266656767885157888777522466663550214789998788
Q ss_pred CHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHCCC-CCCCHHHHHHHHHCCC----
Q ss_conf 966788899999999855985-9999204677766566537888773147310000113-6532234787521012----
Q gi|254780823|r 676 TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-RGQCYLDWTRKLDYTT---- 749 (1040)
Q Consensus 676 ~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~~~~~~~ps~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~---- 749 (1040)
..++.....+..|+.++||.. |++..+................- ...+......... ...........+....
T Consensus 888 ~~e~~~E~lRllYVAlTRA~~~l~~~~a~~~~~~~~~~~~~~~~~-~~lgretv~~~~~~~~~~~~~l~~~l~~~~~n~~ 966 (1324)
T TIGR00609 888 RDERLAEDLRLLYVALTRAKKQLFIGLAPLIKSKNKNLAYSLLHQ-SALGRETVYLLQDGETDNITGLKQCLAALADNEP 966 (1324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHH
T ss_conf 888767666689999999999988532356642244202201106-8876201334106664544899999988723301
Q ss_pred ------CCCCCCCC----C--CC---------CCCCCCCCCCCCCHHHHHH-----------------CCHHHHHHHHHC
Q ss_conf ------34345475----5--67---------6300124677800457764-----------------283688897632
Q gi|254780823|r 750 ------KQPHYKRP----K--PF---------PPLEAQPRTYSFSEIKQLI-----------------NDPYAVYARRIL 791 (1040)
Q Consensus 750 ------~~~~~~~~----~--~~---------~~~~~~~~~lS~S~l~~~~-----------------~cP~~~~~~~~l 791 (1040)
...+.... . +. ..........|-|.+.... .||-+-+....+
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SfS~l~~~~~~~~~L~~~~~~e~~S~~~~~~~~~~~~~ 1046 (1324)
T TIGR00609 967 AGIEVKEAKPIGAESSVKENASTALLEAREFHRRIRENWRITSFSALKELEEKTEVLAVDVTEEPISAALPSLDVEVSSL 1046 (1324)
T ss_pred CCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCHHHHHCCCCCHHHHHCCCCCCHHHHC
T ss_conf 04321357876423311001212467788740357887505510455420004203320355641554323434111301
Q ss_pred CCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88888721------248998899899999999998612589834789999999999965327986699999999999999
Q gi|254780823|r 792 KLDFIPHF------KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 (1040)
Q Consensus 792 ~l~~~~~~------~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1040)
...+.... ..=|.....|+++|.+||.+....++.-..+. ........+.+....... .|...+...+.
T Consensus 1047 ~~~~~~~~~~~~~~h~fP~G~~~G~~lH~~LE~~~~~~~d~~~~~~-e~~~~~~~~~~~~~~~e~----~w~~~l~~~l~ 1121 (1324)
T TIGR00609 1047 EVSAVEKKAELLTLHDFPKGKKTGTLLHAILESLKFSAADDQAADL-EKQENLIAEKLKKTGLEE----QWEEELAEWLE 1121 (1324)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCCH----HHHHHHHHHHH
T ss_conf 1135566423567543879883578999998505877501367879-999999999997216302----00799999999
Q ss_pred HHHHHHHH--------CCCCCEEEEEEEEEEEEECCCC------------------------------------------
Q ss_conf 99999973--------2468859999965688978823------------------------------------------
Q gi|254780823|r 866 SFLEHEEK--------IQSSIEKIFVNIPAKMAIESIG------------------------------------------ 895 (1040)
Q Consensus 866 ~~l~~~~~--------~~~~~~~~~~E~~~~~~i~~~~------------------------------------------ 895 (1040)
..+..... +.-.......|.+|.+.+.+.+
T Consensus 1122 ~~~~tPL~~~~~~~~Ls~~~~~~~~~EmeF~l~~~~~~lrGr~~~~~~~~~~~L~~~~~~~~dPlsPyadr~~~~~L~~~ 1201 (1324)
T TIGR00609 1122 KILNTPLTFAEEAITLSQIDPEDIQREMEFLLPINDFDLRGRLHELQAEKLNALIRKHEPGSDPLSPYADRAASPQLEFQ 1201 (1324)
T ss_pred HHHHCCCCCCCCCCEECCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHCCCH
T ss_conf 99837777554550102148633120010020004765556886546899998862135556887624787402001311
Q ss_pred ---EEEEEEEEEEEECCCCCEEEEECCC---CCCCC---HHH-----HHCCCCCCHHHHHHHHHHCCCCC----CCCCCC
Q ss_conf ---7999999788887998589997268---53468---879-----84230121699999998288677----785574
Q gi|254780823|r 896 ---IHLTGFADRIDLLKSGFVDITDYKT---GDNPK---KET-----AQKLIDPQLSLEAAALKAGSFSQ----IDCRKV 957 (1040)
Q Consensus 896 ---~~l~GrIDRid~~~dG~~~IvDYKT---G~~p~---~~~-----~~~~~~~QL~lY~~~~~~~~~~~----~~~~~~ 957 (1040)
--++|.||-|.+.+.|++.|||||| |..++ ... ...+|++|=.||.+++.+=-... -.....
T Consensus 1202 ~~~G~L~GfiDLvF~~~g~~yyi~DYKsN~LG~~~s~Y~~~~l~~~i~~~~YdlQy~lY~~A~hryL~~r~~~y~~~~~f 1281 (1324)
T TIGR00609 1202 LVKGLLKGFIDLVFRHEGQRYYILDYKSNWLGKDASDYSPEALTEAILKERYDLQYLLYTLALHRYLKKRLKDYDYERHF 1281 (1324)
T ss_pred HHHHHHCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC
T ss_conf 11030155168999708983799862106446882101479999999973581789999999999997358885355418
Q ss_pred CCEEEEEECCCCC
Q ss_conf 2138886068665
Q gi|254780823|r 958 ANLFYIRLKQKFK 970 (1040)
Q Consensus 958 ~~~~y~~l~~~~~ 970 (1040)
||..|+++++=..
T Consensus 1282 GGv~YlFlRG~d~ 1294 (1324)
T TIGR00609 1282 GGVLYLFLRGIDG 1294 (1324)
T ss_pred CCEEEEEECCCCC
T ss_conf 9779866334068
No 24
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.92 E-value=6.1e-20 Score=147.23 Aligned_cols=243 Identities=12% Similarity=0.029 Sum_probs=145.7
Q ss_pred CCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHHHHCCCCCCCCCCCC-CCC-HHHHHHHHHH
Q ss_conf 89813322206762796899999999985118886514033125776565540454334677888-881-8999999999
Q gi|254780823|r 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSN-IQRLLELARL 115 (1040)
Q Consensus 38 ~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~~~~~~~~~~~~~~~-~~~-~~r~~~l~~l 115 (1040)
..+|+ ++++|+.||+||.+|+++|...++... ..+.|+|+++..++...........+. .+. ..+.+.+...
T Consensus 238 ~~~P~---~ILaLTFT~kAA~EMreRl~~~lg~~~---v~~~TFHSlal~ILr~~~~~~p~is~~~~d~~~r~~~~i~~~ 311 (684)
T PRK11054 238 QAQPE---QILLLAFGRKAAEEMDERIRERLGTED---ITARTFHALALHIIQQGSKKVPVISKLENDSKARHALWIAHW 311 (684)
T ss_pred CCCHH---HEEEEECCHHHHHHHHHHHHHHCCCCC---EEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99866---778686349999999999997549998---378659999999999844457876620004677787799999
Q ss_pred HHHHHHHHHHHCC---CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHCCHHCCHHHHHHHHH
Q ss_conf 9999863100000---0122--3211135697889998999999999999759997----89874002202079999999
Q gi|254780823|r 116 ILIWRNKLPDIIK---DLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAAD 186 (1040)
Q Consensus 116 ~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~----~~L~~l~~~~~~~~w~~~~~ 186 (1040)
............. .... .++. .......-..+...+...++++...+... ..+............+....
T Consensus 312 l~~~~~~~~~~k~~~~~L~~e~~~~i-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 390 (684)
T PRK11054 312 LKQCSEKKAQAKGWRKWLTEEMKWPV-PEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIK 390 (684)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98865546666678876555540466-53000131779999999999998764310125888762363778898887789
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999999753248889899999999874434422768809998345661679999999861489689982486321
Q gi|254780823|r 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 (1040)
Q Consensus 187 fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~ 266 (1040)
++..+|++|.+.|...|..|+......+........-..++++|+||+|||+++.+.+|+++|.+...+..++..+|+.+
T Consensus 391 l~~ply~aYe~~Lk~~~~IDFdDmI~~a~~ll~~~~~~~~~ryILVDEfQDiS~~Q~~Ll~aL~~~~~~~~LfaVGDD~Q 470 (684)
T PRK11054 391 LMAPLLKAWKGALKAENAVDFSGLIHQAVVILEKGRFISPWKHILVDEFQDISPQRAALLEALRKQNSQTTLFAVGDDWQ 470 (684)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 99999999999998759988799999999998707144237689987633699999999999873399975999806742
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 078886433420123333344
Q gi|254780823|r 267 PTAIWNTITEKSTNITSSNTT 287 (1040)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~ 287 (1040)
++|.|+|++......+...++
T Consensus 471 SIYrFrGAdi~~~~~F~~~F~ 491 (684)
T PRK11054 471 AIYRFSGADVSLTTAFHERFG 491 (684)
T ss_pred HEEEECCCCHHHHHHHHHHCC
T ss_conf 101126888489998987679
No 25
>pfam10926 DUF2800 Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=99.29 E-value=2.9e-10 Score=83.68 Aligned_cols=217 Identities=16% Similarity=0.109 Sum_probs=123.7
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77800457764283688897632888887212489988998999999999986125898347899999999999653279
Q gi|254780823|r 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 (1040)
Q Consensus 769 ~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 848 (1040)
.+|+|+-..+..||-.--+... .+ +..-..+.-||..|.+.|...+...+....... .....
T Consensus 3 ~LS~Ssa~RWl~Cp~S~~l~~~----~p---d~~S~~A~eGT~aH~l~E~~L~~~l~~~~~~~~-----------~~~~~ 64 (363)
T pfam10926 3 LLSASSAHRWLNCPPSARLEEG----FP---DKSSPAAAEGTAAHELAELKLRKGLDAITKLGR-----------NSEAD 64 (363)
T ss_pred CCCCCCCHHHHCCCHHHHHHHC----CC---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCC
T ss_conf 6784512465569854998724----99---989878997589999999999851696322565-----------55668
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEEEE-ECCCCEEEEEEEEEEEECCCCCEEEEECCCCC-CC
Q ss_conf 86699999999999999999999732468--8599999656889-78823799999978888799858999726853-46
Q gi|254780823|r 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924 (1040)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~E~~~~~~-i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~-~p 924 (1040)
. ...-..+...++.++++-.++... ...+.+|+.+.++ +-.. .-|..|-|-. .+|.+.|||||+|+ ++
T Consensus 65 ~----~~~~~eM~~~~~~Yvd~v~e~~~~~~~~~~~iEqrvd~s~~~p~---~fGTaD~vii-~~~~L~IiDlKyG~GV~ 136 (363)
T pfam10926 65 G----EYVDEEMAEYVQEYVDFVREQIELAKDGVLLIEQRVDFSQIVPE---GFGTGDVVII-ADGVLHIIDLKYGKGVL 136 (363)
T ss_pred C----EEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHCCCC---CCCCEEEEEE-ECCEEEEEECCCCCCCE
T ss_conf 8----05088999999999999999985067987999988522321788---7764128999-38879999877787754
Q ss_pred CHHHHHCCCCCCHHHHHHHHH--HCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887984230121699999998--288677785574213888606866554345654558988899999999999999984
Q gi|254780823|r 925 KKETAQKLIDPQLSLEAAALK--AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 (1040)
Q Consensus 925 ~~~~~~~~~~~QL~lY~~~~~--~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 1002 (1040)
... --++||.+|++.+- -+.+.++. .-.+.-++-+-+. ......+.+++.+-..+.++.....-+
T Consensus 137 V~A----~~N~QL~lYALGAl~~~~~lydi~---~V~mtI~QPR~~~------is~w~~s~~eL~~w~~~~~kp~A~~A~ 203 (363)
T pfam10926 137 VSA----EGNPQLMLYALGALDEFDVLYDFD---TVRMTIFQPRLDN------ISTWEISAEELLEWAEEVVKPAAELAY 203 (363)
T ss_pred ECC----CCCHHHHHHHHHHHHHHCCCCCCC---EEEEEEECCCCCC------CCEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 024----679789999999999816646764---7999997457799------865887899999999999889999862
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 889885555451015668986544201
Q gi|254780823|r 1003 NGEQPFISHLRLSEKSNIQSEYDHLAR 1029 (1040)
Q Consensus 1003 ~~~~~f~~~~~~~~~~~~~~~y~~l~r 1029 (1040)
.|.-.|.+. ..|.||.-+.-||
T Consensus 204 ~g~gef~~G-----~~CrFCkak~~C~ 225 (363)
T pfam10926 204 AGDGEFKPG-----EHCRFCKAKATCR 225 (363)
T ss_pred CCCCCCCCC-----CCCCCCCCHHHCH
T ss_conf 799986789-----8753063222289
No 26
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit; InterPro: IPR006697 The exodeoxyribonuclease V enzyme is a multisubunit enzyme comprised of the proteins RecB (IPR004586 from INTERPRO), RecC (this family) and RecD (IPR006344 from INTERPRO). This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (3.1.11.5 from EC) catalyzes hydrolysis of single-stranded (ss) DNA or double-stranded (ds) DNA and unwinding of the ends of dsDNA . Its nuclease activity is controlled by Chi sites (5' G-C-T-G-G-T-G-G 3') in such a way that the enzyme produces a potent single-stranded DNA substrate for homologous pairing by RecA and single-stranded DNA binding proteins.; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=99.22 E-value=2.7e-07 Score=64.20 Aligned_cols=742 Identities=14% Similarity=0.119 Sum_probs=381.4
Q ss_pred CCCCHHHHCCEEEEECCHHHHHHHHHHHHHHC--------CCCCEECCEEEEHHHHHHHHHHCCCC-CCCCCCCCCCCHH
Q ss_conf 78981332220676279689999999998511--------88865140331257765655404543-3467788888189
Q gi|254780823|r 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQ 107 (1040)
Q Consensus 37 ~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~--------~~~~~~~P~i~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 107 (1040)
.++.|+ .|++++....++|...++... |..+.+ .+.....+.......... .......++.+..
T Consensus 27 ~~~~~~-----~~~~~~~g~~~wl~~~~~~~~~~~~g~~~g~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (1207)
T TIGR01450 27 DPFEPE-----LILVQSPGLARWLKLALAEDLGCGPGGGGGVAANL--EFPLPASFIWQLFGALLPREGIPELSPFNKEA 99 (1207)
T ss_pred CCHHHH-----HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 300001-----33220125899999888764146777555300011--10240789999998522634553100023034
Q ss_pred HHHHHHHHHH--HHHHH-HHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCH-----HC
Q ss_conf 9999999999--99863-10000001223---21113569788999899999999999975999789874002-----20
Q gi|254780823|r 108 RLLELARLIL--IWRNK-LPDIIKDLYPE---SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-----EK 176 (1040)
Q Consensus 108 r~~~l~~l~~--~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~~L~~l~~-----~~ 176 (1040)
-.+.+..++. .+.+. ........... .......+....+.++..++++++.+..+..+|-.--.-+. .+
T Consensus 100 ~~w~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~w~~g~~~~~~~~ 179 (1207)
T TIGR01450 100 LSWRLLALLPDPALLERPEFRTLRRYLADGLTTDAEADSDLSKRYQLAEKLADLFDQYLVYRPDWLAAWEAGDDGLGLGD 179 (1207)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHCCC
T ss_conf 44567775045233003668899998632101110000001246788999998888877524214665422410110122
Q ss_pred CH-------HHHHHHHHHHHHHHHHHHHHHHH---CCCC----CHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCHH
Q ss_conf 20-------79999999999999999997532---4888----9899999999874434422-76880999834566167
Q gi|254780823|r 177 YG-------MWWLLAADFLKIASKYWTERLVE---LNAS----SPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241 (1040)
Q Consensus 177 ~~-------~~w~~~~~fL~~~~~~~~~~l~~---~g~~----d~~~~~~~~~~~~~~~~~~-~~~~~i~v~g~~~~~~~ 241 (1040)
.. ..|+..+ |...... .+.. .........+......... .-+..++++|...+.+.
T Consensus 180 ~~~~~~~~d~~w~~~l---------w~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~g~~~~~~~ 250 (1207)
T TIGR01450 180 LEAKPLGADEKWQAPL---------WRALVAGVGADGAPRWPLHRANLYERFLEALRSGTEDPGLPARLFIFGISALPPG 250 (1207)
T ss_pred CHHHHCCCCHHHHHHH---------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHCCHH
T ss_conf 0011114201245688---------8888754331244413421567889999986313346665411001000012267
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH--H-------H----HC-CCCCCCCCCC-------CCHH-HHHHHH
Q ss_conf 9999999861489689982486321078886433--4-------2----01-2333334446-------7636-899999
Q gi|254780823|r 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--E-------K----ST-NITSSNTTYS-------THPQ-YSLAKL 299 (1040)
Q Consensus 242 ~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~--~-------~----~~-~~~~~~~~~~-------~~~~-~~~~~l 299 (1040)
...++.++..++..+.++.+++..++.......+ . . .. .......... .|.. .....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~p~~~~wg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 330 (1207)
T TIGR01450 251 YLELLAALAEHCDVHLFLPNPCREYWGDLIDPTGKYLARLLARQRTGYRLADPLLPLPQDLENAGEDSYDHGEHAAGHPL 330 (1207)
T ss_pred HHHHHHHHHHHCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999986533024577317514555321120157899988876543333320135554302344333212345541157
Q ss_pred HHHCCCCHHHCCCCCCCCCCC--------------------------HHHH-HHHHHHH--CCCCCC--CHHHCCCCCCC
Q ss_conf 976299966602577666453--------------------------6777-7544420--111221--00000012356
Q gi|254780823|r 300 LDFLDIKREDVKRLGNVSNEM--------------------------YGRS-MVISKSF--LPPDTS--DMRNTDILENK 348 (1040)
Q Consensus 300 ~~~l~~~~~~~~~~~~~~~~~--------------------------~~~~-~~~~~~~--~~a~~~--~~~~~~~~~~~ 348 (1040)
+..++....+........... .... ....... .+.... ...........
T Consensus 331 l~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~gg~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1207)
T TIGR01450 331 LASWGKLGRDFLYLLGELEASGPGGELDAFLELTTRLGTTLDEGGLPDSLLGQLQADILHLEPRPEGGPNIEEFARSGHK 410 (1207)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCC
T ss_conf 88753434678988765420245443100101012302200025640467888888876411222344203444102333
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC-------C----CEEEEEECCCCHHHHHHHHH------H----
Q ss_conf 7653213378159955998999999999999986422-------9----84999802641135788843------5----
Q gi|254780823|r 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-------K----KKSALITADRNLARRVKLEL------T---- 407 (1040)
Q Consensus 349 ~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~-------~----~~~avv~~d~~~~~~v~~~L------~---- 407 (1040)
.+.......+++++.|+++..|...+.+.+....+.. + ++++|+++|...+.++..+. .
T Consensus 411 ~~~~~~~d~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~g~~~~p~~~p~~~~~~~p~~~~~~p~~~~~~g~~~~~~~c~ 490 (1207)
T TIGR01450 411 PPSAPLDDGSLQFHACHSPLRELEVLHDRLLALLEEDPEGQRFNPTLQPRDIVVLVPDIDAYAPYIEAVFGQAPPDGDCH 490 (1207)
T ss_pred CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 45666565430665411225788999999998740475655457877755126760450123235666523554444334
Q ss_pred -HHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCC---
Q ss_conf -513777665690035288989999999998379997899998629654--56679389999999732232104557---
Q gi|254780823|r 408 -RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKN--- 481 (1040)
Q Consensus 408 -~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~~~~~~~~~~~~~~~~~~~~--- 481 (1040)
...+|+.++........|....+..++.+....+....++.++..|-+ .++.+.........-......+.+..
T Consensus 491 p~~~~p~~~~d~~~~~~~p~~~~~~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~wg~~~~~ 570 (1207)
T TIGR01450 491 PARFLPYSLSDRSLSQREPLLEAFLHLLDLPESRFGASELLDLLDVPPLRARFGLDEDDLETLRRWVAEAGIRWGLDAEH 570 (1207)
T ss_pred CCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 11013300000000100368999999974234444489999987667888761443335899999987324413666244
Q ss_pred ------------CCCCCCHHHHHHHHCCCCCCC-CCCC--CHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf ------------778111788875220114444-3455--2010155343257999999989999998750110022102
Q gi|254780823|r 482 ------------SYDIMDLKSLVLDRIATQKNN-THVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 (1040)
Q Consensus 482 ------------~~~~~~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~ 546 (1040)
......+...+.......... .... .|.. ...........+...+... +..+.........
T Consensus 571 ~~~~~~~~~~~~~~w~~g~~~~~~g~~~~~~~~~~~~~gg~w~~-~~~~~~~~~~~~~g~~~~~---~~~l~~~~~~~~~ 646 (1207)
T TIGR01450 571 RAELGLPATDQGNTWRFGLERLLLGYALGEGAGPLWGGGGQWVL-PYDDVGGLQAELAGRLAEF---LERLSDWRRGLAE 646 (1207)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_conf 33311433210024677778877632113333301115764123-4321112578887789999---9999999986411
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 378899999999999723676321114-5665777999999998664213766447788999999862244335667787
Q gi|254780823|r 547 NLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 (1040)
Q Consensus 547 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 625 (1040)
......|...+...++........... ..........................+........+...+.+....... ..
T Consensus 647 ~~~~~~w~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 725 (1207)
T TIGR01450 647 PAPLEEWLERLLDLLDALFAVDDEGPGIELALTQLERLLVKWLADAAGAGFAPPLPLEVVRDHLAALLDGEPTSARF-LA 725 (1207)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHH-HC
T ss_conf 23578999999999888741146763268999999999999998654310001245789999998640454210001-00
Q ss_pred CCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH--HCCCCCHHHHHHHHHHHHHH-HHCCC-EEEEEE
Q ss_conf 737980343335665863785286311345666667648967885--64899966788899999999-85598-599992
Q gi|254780823|r 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQAAHDFEM-ANGTR-HLIYTR 701 (1040)
Q Consensus 626 ~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~--~l~l~~~e~~~~~~~~~~~~-~~~a~-~v~lt~ 701 (1040)
..+.+.+....+...|.++++.|+|+|.+|.......+--..... .-..+....+.....+.|.. +..+. .++++|
T Consensus 726 g~~~~~~~~p~~~~p~~~~cl~g~~~g~~p~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~l~l~~~~~~~~~~~~~~ 805 (1207)
T TIGR01450 726 GGVNFCTLVPMRSLPFRVVCLLGLNDGDYPRQEPPLGFDLLAKEPGTAQRRPGDRSRRDDDRYLFLEALLSAREVLYVSY 805 (1207)
T ss_pred CCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 33201111001113400001330564556654330134455402340120334200000257899998764333210001
Q ss_pred ECCC--CCCCCCCCHHHHHHHHCCCCCCH----HHCCCC----------------------------------CCCHHHH
Q ss_conf 0467--77665665378887731473100----001136----------------------------------5322347
Q gi|254780823|r 702 SLRE--NNIPTIASRWLQRLLVLGGTDFF----DNLKKR----------------------------------GQCYLDW 741 (1040)
Q Consensus 702 ~~~~--~~~~~~ps~~l~~l~~~~~~~~~----~~~~~~----------------------------------~~~~~~~ 741 (1040)
...+ ++.+..|+..+.++......... ...... ......|
T Consensus 806 ~g~~~~~~~~~~p~~~~~~l~~~~~~~~~~~gd~~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (1207)
T TIGR01450 806 VGRDIRDNSERPPSVLLGELLDYLAAGYGLAGDENLEPDGDGARLAERLLEQHPLQPFSPRNFGPGGRPGGGPFSFAPEW 885 (1207)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHH
T ss_conf 04431256432532578999998875304665111467764579999988740444145001255532244432100567
Q ss_pred HHHHHC-CCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC
Q ss_conf 875210-1234345475567--630012467780045776428368889763288888721
Q gi|254780823|r 742 TRKLDY-TTKQPHYKRPKPF--PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 (1040)
Q Consensus 742 ~~~l~~-~~~~~~~~~~~~~--~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~ 799 (1040)
...... .....+...+.+. +.....+..+....+..|...|..+|++..++..-....
T Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 946 (1207)
T TIGR01450 886 LPAARSAEGGRPDFDAPLPGRLPLPLEPPAELGLADLLRFWANPVKAFFQQRLGVSFPEPP 946 (1207)
T ss_pred HHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8765420234553311101211443453110258999999864899999987414466420
No 27
>TIGR00372 cas4 CRISPR-associated protein Cas4; InterPro: IPR013343 This entry consists of conserved proteins found in many prokaryotic genomes whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis suggests that they be nucleases like RecB (IPR004586 from INTERPRO), functioning as part of a hypothetical DNA repair system , . .
Probab=98.62 E-value=1.3e-06 Score=59.81 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=109.0
Q ss_pred CCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78004577642836888976328888872124899889989999999999861258983478999999999996532798
Q gi|254780823|r 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 (1040)
Q Consensus 770 lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 849 (1040)
+++|.+..|+=||...|+.+..+........ .-....|+.+|...+.-.
T Consensus 1 ~~~s~v~~Y~yCPr~~~~~~~~~~~~~~~~~--~~~m~~G~~~~~~~~~~~----------------------------- 49 (206)
T TIGR00372 1 ITVSDVKEYLYCPRKLWLMKKGGSEEESEER--KVSMEEGRLIHEEAERAV----------------------------- 49 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 9566788887512699999752554675446--501232146667876567-----------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCE--EEEEEEEEEEECCCC------CEEEEECCCC
Q ss_conf 66999999999999999999997324688599999656889788237--999999788887998------5899972685
Q gi|254780823|r 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI--HLTGFADRIDLLKSG------FVDITDYKTG 921 (1040)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~--~l~GrIDRid~~~dG------~~~IvDYKTG 921 (1040)
..++.. .++..+..|.+ +.+....+ .|.|++|=|... +| ...+|+||+|
T Consensus 50 -----------r~~~~~---------~~~~~~~~~~~--v~l~~~~~g~~l~G~~D~~~~~-~~~~~~g~~~~pvE~K~~ 106 (206)
T TIGR00372 50 -----------RKFLKS---------LGFEEVKEEKE--VELKSKKYGKGLKGVIDVVLEE-DGEIGKGAEPVPVEVKSG 106 (206)
T ss_pred -----------HHHHHH---------CCCCEEEEECC--EEECCCCCCCEEECCEEEEEEE-CCCCCCCCCEEEEEEEEC
T ss_conf -----------888764---------03300222101--4532785464154014789861-564446520126767624
Q ss_pred CCCCHHHHH--CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 346887984--230121699999998288677785574213888606866554345654558988899999999999999
Q gi|254780823|r 922 DNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 (1040)
Q Consensus 922 ~~p~~~~~~--~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 999 (1040)
+++...... -+...||.+|++++++..-..+... +.+..++.-.+ .+......+ +-.-.....+.+-+.
T Consensus 107 ~~~~~~~~~~~~~~~~Ql~aYa~~~~~~~~~~~~~i-~~~~~~y~~~~-~~~y~v~~~-------~~~~k~~~~~~~~i~ 177 (206)
T TIGR00372 107 KAKKRLLRERGLAHKLQLLAYALLLEERYGVEVSDI-VKGYLLYLEEG-KKVYEVEIS-------EELRKKAVKLIEKIE 177 (206)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH-HEEEEEEECCC-EEEEEEEEC-------HHHHHHHHHHHHHHH
T ss_conf 466776435652357899999999855218430060-02202563077-389998628-------248999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98488988555545101566898654420
Q gi|254780823|r 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 1000 ~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
++.+++.+ +.+......|.+|.|-..|
T Consensus 178 ~~~~~~~~--P~~~~~~~kC~~C~y~~~C 204 (206)
T TIGR00372 178 KLLEGEKL--PPPPKKSRKCKFCPYREIC 204 (206)
T ss_pred HHHHCCCC--CCCCCCCCCCCCCCCCCCC
T ss_conf 99848815--5768887757775552125
No 28
>KOG1805 consensus
Probab=98.47 E-value=2.1e-05 Score=51.86 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=4.2
Q ss_pred CHHHHHHHHH
Q ss_conf 9888999999
Q gi|254780823|r 982 SADELSEKSL 991 (1040)
Q Consensus 982 ~~~~~~~~~~ 991 (1040)
...+++++|+
T Consensus 1026 ~~~eLLkD~r 1035 (1100)
T KOG1805 1026 KVGELLKDWR 1035 (1100)
T ss_pred CHHHHHHHHH
T ss_conf 2777877667
No 29
>pfam06023 DUF911 Archaeal protein of unknown function (DUF911). This family consists of several archaeal proteins of unknown function.
Probab=98.39 E-value=8.9e-05 Score=47.72 Aligned_cols=226 Identities=17% Similarity=0.204 Sum_probs=115.1
Q ss_pred CCCCCCHHHHHHCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHH
Q ss_conf 677800457764283--6888976328888872124899889989999999999861258-----983478999999999
Q gi|254780823|r 768 RTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQIID 840 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP--~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~-----~~~~~~~~~l~~~~~ 840 (1040)
.++|.|.+.. -=|| ..-|++++++.+.... .+...|.++|.++-........ .... ..+.....
T Consensus 43 ~~Lsvsdva~-~yCpT~RDvYLrrVlg~r~~~~-----~~~~~G~~iH~v~~~~~~~~kr~iysg~~~~---~~~e~~~~ 113 (290)
T pfam06023 43 LGLSLSDIAY-GYCPTGRDVYLKRVLGVRGEEG-----GPLVLGQAIHEAFAKAIEEVKSLIYSGEPPD---SSLERSFM 113 (290)
T ss_pred CCCCHHHHHC-CCCCCCHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHH
T ss_conf 6878998714-8689850768888626457963-----5456518999999999999988874477775---57899874
Q ss_pred H-HH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CEEEEEEEEEEEEECCCCEEEEE--EEEEEEE
Q ss_conf 9-96-5327986699999999999999999999732468---------85999996568897882379999--9978888
Q gi|254780823|r 841 S-HF-EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS---------IEKIFVNIPAKMAIESIGIHLTG--FADRIDL 907 (1040)
Q Consensus 841 ~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~E~~~~~~i~~~~~~l~G--rIDRid~ 907 (1040)
. .+ ..+...+....++.-...++..++.... ...+. .-|+.+|. .++|..+-|++ +.|-+..
T Consensus 114 ~~~~~~~~e~~~~~~~l~~~~a~r~~a~~~ev~-a~~~~~~~dsl~~~aiPv~~E~----~VDGs~LGLS~~l~~Da~i~ 188 (290)
T pfam06023 114 ADEFGCPEDVREYAKALWKYLASRVSAELSEVR-SKFPKATEDSAAFRVIPVAVEV----RVDGSPLGLSSYLRVDAFIP 188 (290)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHEECCEEEEE----CCCCCCCCCCCCCCCCHHHC
T ss_conf 202257678889999999999999987788887-4044577302332104457882----35884136764404442320
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 79985899972685346887984230121699999998288677785574213888606866554345654558988899
Q gi|254780823|r 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 (1040)
Q Consensus 908 ~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~ 987 (1040)
.-| .|+|.|||+... .| .+||+=|||+++.- .++ +.+.+...|+..+++.+.+..... --+++-
T Consensus 189 -~~~--~Vve~K~G~~~~-----~H-~LalAGYALAiEs~--~e~-PVD~G~lVyv~~~~~v~~~~~~~~----I~d~LR 252 (290)
T pfam06023 189 -ILP--LVVEMKVGSYQE-----RH-ELALAGYALAIESD--LEI-PVDYGLLVYVTFNGGVKIKARLVY----ISDSLR 252 (290)
T ss_pred -CCC--EEEEEECCCHHH-----HH-HHHHHHHHHHHHHH--HCC-CCEEEEEEEEEECCCEEEEEEEEE----CCHHHH
T ss_conf -466--489996175456-----78-98888899999887--548-714405999997797589889998----387899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999999998488988555545101566898654420
Q gi|254780823|r 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
.++.+.=.+++..+.++.-|- ..+.++.+|.+-+-|
T Consensus 253 ~~FLE~RDe~~~~v~~~~DPG-----~a~~C~~~CpF~~~C 288 (290)
T pfam06023 253 TEFLEERDRAIEIVDNGSDPG-----LAKKCPPTCPFYEVC 288 (290)
T ss_pred HHHHHHHHHHHHHHHCCCCCC-----CCCCCCCCCCHHHHH
T ss_conf 999998789999986278999-----987899888647763
No 30
>pfam09810 Morph_protein1 Defects in morphology protein 1, mitochondrial precursor. Members of this family of proteins are thought to be involved in cellular morphology, though little else is known about them.
Probab=98.24 E-value=7.5e-05 Score=48.20 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=83.8
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 46778004577642836888976328888872124899889989999999999861258983478999999999996532
Q gi|254780823|r 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 (1040)
Q Consensus 767 ~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 846 (1040)
...+|+|.|-+..-|-.++++.--...+.. ...+...|+.+|..||.=..... +-+ -.
T Consensus 11 kk~LSVTdL~s~~WCElQ~~Y~L~~~g~~~-----~T~aMk~G~~~H~~LE~Evh~~V---~ve--------------v~ 68 (329)
T pfam09810 11 KKALSVTDLSSPAWCELQYEYTLTKFGRKE-----RTPAMKRGIKIHEKLELEVHTTV---PVE--------------VT 68 (329)
T ss_pred CCCEEECCCCCCCHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHHHHHHHHHCCCE---EEE--------------CC
T ss_conf 887403102771024423330012478765-----56888987999999887436765---875--------------48
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEC-----------------C
Q ss_conf 79866999999999999999999997324688599999656889788237999999788887-----------------9
Q gi|254780823|r 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-----------------K 909 (1040)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~-----------------~ 909 (1040)
.. ...+. -++-.++..+... +..+ ...|.+.-.-++ ++.|+|.||-|-.. .
T Consensus 69 t~-ED~~a---l~~~N~I~~L~tL---~~~G---~tREl~V~G~v~--g~lv~GIIDeL~~~~~~~~~~~~~~~~~~~~~ 136 (329)
T pfam09810 69 TK-EDAWA---LRLLNIILGLRTL---REEG---ITRELPVWGVVK--GELLNGIIDELSYENPDPSLEETAASNYSSNA 136 (329)
T ss_pred CC-HHHHH---HHHHHHHHHHHHH---HHCC---CEEEEEEEEEEC--CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 82-07899---9999999999999---8548---447999999988--99999996798974898430000013333467
Q ss_pred CCCEEEEECCCCC---CCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9858999726853---468879842301216999999982
Q gi|254780823|r 910 SGFVDITDYKTGD---NPKKETAQKLIDPQLSLEAAALKA 946 (1040)
Q Consensus 910 dG~~~IvDYKTG~---~p~~~~~~~~~~~QL~lY~~~~~~ 946 (1040)
++.+.|+|.||=+ .|+..++..+ ..||.+|-.++..
T Consensus 137 ~~~l~i~DvKTR~~~~~Ps~~q~~~s-~lQlmlY~~~l~~ 175 (329)
T pfam09810 137 ISELIISDTKTRRSKSLPSEAQKRPT-LLQLMLYKYLLDD 175 (329)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHH-HHHHHHHHHHHHH
T ss_conf 78069985305789889886776245-7799999999999
No 31
>pfam01930 Cas_Cas4 Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C terminus.
Probab=98.11 E-value=5.2e-05 Score=49.29 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=58.9
Q ss_pred EEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCCCCCCCC
Q ss_conf 99997888879985899972685346887984230121699999998288677785574-21388860686655434565
Q gi|254780823|r 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITND 977 (1040)
Q Consensus 899 ~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~-~~~~y~~l~~~~~~~~~~~~ 977 (1040)
+|+||.|+.. +|.++++.||.|++....+ ..||.+|++.+++-| ..+ .|..|+.-..+ ...+..+
T Consensus 54 ~g~iD~v~~~-~~~~~~vE~K~s~~~~~a~-----~~QL~~ya~~Le~~g------~~v~~G~l~y~~~rr--r~~V~lt 119 (162)
T pfam01930 54 SIKIDFVTRR-KGGLVVHEVKKSSKMEEAH-----RMQLLYYLYLLKKRG------IEAKEGVLHYPKERK--REEVELT 119 (162)
T ss_pred CEEEEEEEEE-CCEEEEEEEECCCCCCHHH-----HHHHHHHHHHHHHCC------CCCCCEEEEECCCCE--EEEEECC
T ss_conf 4899999986-9959999985589998089-----999999999999829------866617999856887--9999869
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 455898889999999999999998488988555545101566898654420
Q gi|254780823|r 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 978 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
++..++..+.+.+ +.++.+...| +.+.. ...|..|.|..+|
T Consensus 120 ------~e~r~~~~~~i~~-i~~i~~~~~p--P~~~~-~~~C~~Csy~~~C 160 (162)
T pfam01930 120 ------EEDREELEEAIKE-IEEIISSEKP--PPPEK-KKYCKKCAYREFC 160 (162)
T ss_pred ------HHHHHHHHHHHHH-HHHHHHCCCC--CCCCC-CCCCCCCCCHHHC
T ss_conf ------9999999999999-9999847999--79998-9979899974103
No 32
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=97.93 E-value=0.0014 Score=39.83 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=7.1
Q ss_pred HCCCEEEEEECCC
Q ss_conf 2298499980264
Q gi|254780823|r 384 ENKKKSALITADR 396 (1040)
Q Consensus 384 ~~~~~~avv~~d~ 396 (1040)
..+..+-|+..+.
T Consensus 138 ~~p~~~~lilg~~ 150 (457)
T TIGR03491 138 VAPKKGLIILRDG 150 (457)
T ss_pred CCCCEEEEEECCC
T ss_conf 8887599997899
No 33
>PHA00619 CRISPR-associated Cas4-like protein
Probab=97.60 E-value=0.0046 Score=36.49 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=53.7
Q ss_pred CCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHH--HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 237999999788887998589997268534688798--423012169999999828867778557421388860686655
Q gi|254780823|r 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 (1040)
Q Consensus 894 ~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~--~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 971 (1040)
.|+.|.||||-++. + ..+|+-+|+....+...+ ..+. -||-+|.-++.. .-+-+.|+.+.++-.
T Consensus 94 lGf~I~GRiDay~~--e-~~~v~eiK~t~~~~l~~~~~~~hl-~QLN~Yl~m~~a---------~~GyLy~V~~dgr~e- 159 (210)
T PHA00619 94 LGFEIVGRIDVYDK--E-ENTIYELKYTHMQDLDKGRLNNYL-RQLNYYIEMANA---------MAGYLIIVHADGRVE- 159 (210)
T ss_pred CCEEEEEEEEEECC--C-CCEEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHH---------HCCEEEEEECCCCHH-
T ss_conf 56599978874237--7-775999985366667778707499-999999999874---------257699998489847-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 434565455898889999999999999998488988555545101566898654420
Q gi|254780823|r 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
.+. .++.+. +...+.... ....++.. |.++-.-+...|..|.|.-+|
T Consensus 160 -eik-----~~~~~t--~l~~r~~af-~i~~~E~~-lpp~K~~p~~~C~~CP~~~~C 206 (210)
T PHA00619 160 -EIK-----RDWKET--DLENRANAF-GISVEENI-LPPKKSKPDRECIECPFYNVC 206 (210)
T ss_pred -HHH-----HHHHHH--HHHHHHHHH-CCCCHHCC-CCCCCCCCCCCEEECCCEEEE
T ss_conf -776-----664430--266654440-02320202-799989999610247710166
No 34
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms]
Probab=97.32 E-value=0.01 Score=34.27 Aligned_cols=226 Identities=16% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCCCCCHHHHHHCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCC----HHHHHHHH
Q ss_conf 677800457764283--6888976328888872124899889989999999999861258-----983----47899999
Q gi|254780823|r 768 RTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNT----PEINHLMK 836 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP--~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~-----~~~----~~~~~~l~ 836 (1040)
.++|.|.+. +.-|| ..-|++++++.+.-.. .+..+|.++|.++..-.+++.. ..+ ........
T Consensus 42 ~~lslSdi~-y~yCpt~RdvYLk~Vlg~Rge~~-----~~l~lG~aIHea~~~~~~e~k~~~~sg~sp~~sv~~d~~~~~ 115 (281)
T COG4343 42 VRLSLSDIV-YGYCPTGRDVYLKRVLGVRGEGG-----FPLLLGAAIHEAFAKAIEEHKSLIYSGESPRESVLEDAREMA 115 (281)
T ss_pred CCCCHHHHH-CCCCCCCHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 575498863-26788740668999862034677-----430367899999999999999875045683312067899987
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 999999653279866999999999999999999-9973246885999996568897882379999997888879985899
Q gi|254780823|r 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 (1040)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I 915 (1040)
.+.... .|+.....-.....+....++. ..........|+.+| ..++|..+-+++.+= .|.. .|.-+|
T Consensus 116 ~~~~k~-----v~~~~~~~~~~~y~~~~~e~~~~tsds~~~~~~Pv~vE----~~vDGspLGlS~lv~-~D~~-~~l~vv 184 (281)
T COG4343 116 NILAKR-----VWARLNEYCEISYMAVRSEKASRTSDSALSIGAPVLVE----FNVDGSPLGLSDLVR-VDAL-VGLPVV 184 (281)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEE----ECCCCCCCCCCCEEC-CHHH-CCCCEE
T ss_conf 789888-----88988778899999999876542244101312535898----147897455533223-0010-367659
Q ss_pred EECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 97268534688798423012169999999828867778557421388860686655434565455898889999999999
Q gi|254780823|r 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 (1040)
Q Consensus 916 vDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 995 (1040)
++.|+|+- .+..+ +-|+=|+|+++.. .++ +.+.+-+.|+..+++.+.+.....-+ +.+-.+|.+.=.
T Consensus 185 ~elKvG~~---~e~hr---LalAGYAlAiEa~--~ei-PVD~G~li~vtvN~~vk~~~~l~~i~----d~lRseFLe~RD 251 (281)
T COG4343 185 VELKVGSY---REVHR---LALAGYALAIEAD--TEI-PVDYGVLISVTVNSGVKIKARLVYID----DSLRSEFLEERD 251 (281)
T ss_pred EEEECCCH---HHHHH---HHHHHHHHHHHHH--HCC-CCCEEEEEEEEECCCEEEEEEEEECC----HHHHHHHHHHHH
T ss_conf 99941652---68999---8874467653241--058-73235799999768606888999738----378899998778
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 999998488988555545101566898654420
Q gi|254780823|r 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 996 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
+.+.-+..+..|- ..+.+...|.+-+.|
T Consensus 252 ~~~div~~g~DPG-----~a~~C~~~C~F~~~C 279 (281)
T COG4343 252 RVADIVEYGSDPG-----LAKSCPSGCPFYEVC 279 (281)
T ss_pred HHHHHHHCCCCCC-----CCCCCCCCCCHHHHC
T ss_conf 8999997388989-----998899998458751
No 35
>TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family; InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis has suggested that they may function as nucleases in DNA repair, similar to RecB (IPR004586 from INTERPRO) . .
Probab=97.14 E-value=0.014 Score=33.39 Aligned_cols=230 Identities=15% Similarity=0.191 Sum_probs=114.1
Q ss_pred CCCCCCHHHHHHCCH--HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH-
Q ss_conf 677800457764283--6888976328888872124899889989999999999861258--98347899999999999-
Q gi|254780823|r 768 RTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSH- 842 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP--~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~--~~~~~~~~~l~~~~~~~- 842 (1040)
.++|.|.+.- --|| ..-|++++|+.+.... ....+|+.+|.++..-..++.. ......-..+.+.....
T Consensus 34 ~~Ls~SD~a~-g~C~~~RdvYLkrVL~~r~~~~-----~~l~~G~~iH~~f~~al~~~r~l~~~g~~~~~~~~~~~~~~~ 107 (295)
T TIGR01896 34 LGLSLSDVAY-GYCPTGRDVYLKRVLGIRGEER-----AKLVLGQAIHEVFKKALEEVRKLIYSGYDMFSVLLRSFRAEK 107 (295)
T ss_pred CCCHHHHHHC-CCCCCCCCEEEEEECCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 1221445526-7667754334541146123643-----310345799999999999999988415211257753232233
Q ss_pred H-------------HHCCCCHHHHHHHHH----HHHHHHHHHHHHHHHCCCCC---EEEEEEEEEEEEECCCCEEEEEEE
Q ss_conf 6-------------532798669999999----99999999999997324688---599999656889788237999999
Q gi|254780823|r 843 F-------------EKENLPPHIDIIWRH----LFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESIGIHLTGFA 902 (1040)
Q Consensus 843 ~-------------~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~---~~~~~E~~~~~~i~~~~~~l~GrI 902 (1040)
+ .....++....+... ....+.+.-..+-....... -|+.+| +.++|..+ |==
T Consensus 108 i~~lkveviE~~~~~~~~~~~y~~~~~~~L~~~~~~~v~~~~~~~s~DS~~~~~raiP~~~E----~~VDGspl---GLs 180 (295)
T TIGR01896 108 IVRLKVEVIEVAELCAKELIKYCVEIYSYLILAVAAYVSEKASFFSADSLSFLVRAIPVAVE----YKVDGSPL---GLS 180 (295)
T ss_pred HHHHHHEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEE----ECCCCCCC---CCC
T ss_conf 32221104113340546666899999988899999999998864164024446411655775----12688554---642
Q ss_pred EEEEECCCC-CE-E--EEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC--CCCCCCCC
Q ss_conf 788887998-58-9--997268534688798423012169999999828867778557421388860686--65543456
Q gi|254780823|r 903 DRIDLLKSG-FV-D--ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCITN 976 (1040)
Q Consensus 903 DRid~~~dG-~~-~--IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~--~~~~~~~~ 976 (1040)
||+-.+... .+ . ||-.|+|+... .| .+=|+=||||++.. .+++ .+-|-+.||...++ -+.+....
T Consensus 181 ~~l~Vda~~~~l~~dlVvE~K~G~~~~-----~h-~LALAGYALAiEa~--~e~P-vDyG~lv~v~v~~gs~v~~~~~~~ 251 (295)
T TIGR01896 181 DRLRVDALVLILPVDLVVEMKVGSYQE-----RH-ELALAGYALAIEAD--LEVP-VDYGLLVYVNVNEGSKVEIKARLV 251 (295)
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCHHH-----HH-HHHHHHHHHHHHHH--HCCC-EEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 000065432017831799852587356-----77-77765458877763--0783-213478999862787436899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 5455898889999999999999998488988555545101566898654420
Q gi|254780823|r 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 977 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
.- -+.+-.++.+.=.+++.-+.++.-|. .+.+++..|.+=+.|
T Consensus 252 ~i----~d~lR~eFLe~RD~~~~~v~~~~DPG-----lp~~C~~~CPF~~~C 294 (295)
T TIGR01896 252 YI----SDDLRREFLEERDEVIEIVESGSDPG-----LPPKCPPTCPFYEVC 294 (295)
T ss_pred EE----CHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCCCCCCCCC
T ss_conf 84----74777999998899999986477423-----388883467843578
No 36
>PHA01622 CRISPR-associated Cas4-like protein
Probab=97.12 E-value=0.0028 Score=37.93 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=65.5
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 99996568897882379999997888879985899972685346887984230121699999998288677785574213
Q gi|254780823|r 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 (1040)
Q Consensus 881 ~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~ 960 (1040)
.++|++..-++. ++.|+||||-| . +. .++..||.+.-..--...|. .|+.+|-.+.... +.++.+.
T Consensus 69 CetEv~Is~ei~--GI~IsGRiD~i-C--~N--dlIEiKTt~~~~~~p~~~Hl-~Qv~vY~~l~~~q------~~~~~~i 134 (204)
T PHA01622 69 CQTEVEIKDEIE--GIKISGRIDIV-C--NN--DLLEIKTISYNYFQVKEYHL-YQVALYYHILKKQ------NYQINNV 134 (204)
T ss_pred CEEECCCCCCEE--EEEEEEEEEEE-C--CC--CEEEEEEEECCCCCCHHHHH-HHHHHHHHHHCCC------CCCCCCE
T ss_conf 457323355401--59997255010-2--57--44999963020377058899-9999999997347------8633427
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 8886068665543456545589888999999999999999---8488988555545101566898654420
Q gi|254780823|r 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL---LQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 961 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
..+.++.... ...+..--+..++-+.+...+.+.. |.+. .-+.--+......|..|.+.+.|
T Consensus 135 YiVYi~R~~~-----eVkef~idesvLet~~~~~~~~i~~yk~~~~e-~dyk~vp~~d~~fCk~CeF~~kC 199 (204)
T PHA01622 135 YIVYLNRNTR-----EVKQFKIDEKVLETYYQKVIEWIKKFKEYLKE-TDYKKVPGVNNYICKSCEFKQKC 199 (204)
T ss_pred EEEEEECCCC-----HHHHEEECHHHHHHHHHHHHHHHHHHHHHHHC-CCHHCCCCCCCEEECCCEEEEEE
T ss_conf 9999954732-----55721204999999999999999999998520-45201778760575143442137
No 37
>pfam08696 Dna2 DNA replication factor Dna2. Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways.
Probab=96.53 E-value=0.021 Score=32.11 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 467780045776428368889763288888721248998899899999999998612589834789999999999
Q gi|254780823|r 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 (1040)
Q Consensus 767 ~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~ 841 (1040)
..=+|.|.+.....||.+.+++...+... ..-.+...||++|.++|...... ..........+...+++
T Consensus 57 D~LIS~T~Va~s~~C~RraVL~~r~k~~~-----~~s~~ml~GtivHelfQ~~l~~~-~~~~~~l~~~~~~~l~~ 125 (209)
T pfam08696 57 DILVSGTSVASSIQCPRRAVLQERFKGSG-----EPSKPMLIGTILHEIFQEALRAN-DFDLEFLEELADAVLEK 125 (209)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf 64254004404243661999999844689-----87534502343999999999739-99889999999999999
No 38
>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms]
Probab=95.90 E-value=0.097 Score=27.81 Aligned_cols=174 Identities=15% Similarity=0.161 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 67780045776428368889763288888721248998899899999999998612589834789999999999965327
Q gi|254780823|r 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 847 (1040)
..++.+.+..|.-||.+-++.-..+..... ....+....|..+|..++.+.+...
T Consensus 14 ~~i~~~~v~~y~~Cprk~w~~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~----------------------- 68 (190)
T COG1468 14 MRITGSDVNEYLYCPRKLWLFSRGGPEESP--EVYSEGVELGKLIHEKLEKFLRDEK----------------------- 68 (190)
T ss_pred EEECHHHHHHHHHCCHHHHHHHHCCCCCCC--HHCCHHHHHHHHHHHHHHHHHCCCC-----------------------
T ss_conf 241288878888567989999844865650--0025135555788888998851244-----------------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHH
Q ss_conf 98669999999999999999999973246885999996568897882379999997888879985899972685346887
Q gi|254780823|r 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 (1040)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~ 927 (1040)
.+..+. +.+.++ .|.|+.|..- ...+|++|+|++....
T Consensus 69 --------------------------------~v~l~~-~~i~~d----~lk~~~~~~~-----~~~~vEiK~~~~~~~~ 106 (190)
T COG1468 69 --------------------------------EVELEG-EWIKID----FLKGRMDLEV-----KDVVVEIKKSKKMEKA 106 (190)
T ss_pred --------------------------------CCEECC-EEEEEE----EECCCCEEEC-----CCEEEEEECCCCCCCC
T ss_conf --------------------------------632312-056554----2235300441-----4213898657676535
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98423012169999999828867778557421388860686655434565455898889999999999999998488988
Q gi|254780823|r 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 (1040)
Q Consensus 928 ~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1007 (1040)
- + ..||.-|+..++..|+. ...+-+.|..++. .....- -++..+.....+.+ +.++.++..|
T Consensus 107 ~---~-~~Ql~~ylyl~e~~g~~----v~~g~i~Y~~~~k---~~~Vei------~~~~~e~v~~~~~e-i~~ile~~~~ 168 (190)
T COG1468 107 P---H-KLQLAYYLYLEEKLGIA----VAKGYIYYPKLKK---RVEVEL------TEELREEVERVLKE-IEEILEGGKP 168 (190)
T ss_pred H---H-HHHHHHHHHHHHHHCCE----EEEEEEEECCCCC---EEEEEE------CHHHHHHHHHHHHH-HHHHHHCCCC
T ss_conf 4---7-99999999999860920----0368998525673---799980------89999999999999-9999828999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5555451015668986544201
Q gi|254780823|r 1008 FISHLRLSEKSNIQSEYDHLAR 1029 (1040)
Q Consensus 1008 f~~~~~~~~~~~~~~~y~~l~r 1029 (1040)
++......|.+|.|.-+|=
T Consensus 169 ---p~~~~~~~C~~C~y~~iC~ 187 (190)
T COG1468 169 ---PPPKKKKKCKKCAYREICF 187 (190)
T ss_pred ---CCCCCCCCCCCCCCCEECC
T ss_conf ---9999988699998633426
No 39
>PRK09709 exonuclease VIII; Reviewed
Probab=95.88 E-value=0.098 Score=27.77 Aligned_cols=224 Identities=13% Similarity=0.023 Sum_probs=108.3
Q ss_pred CCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHCC---------CCCCHHHH
Q ss_conf 12467780045776428368889763288888721248998899899999999---9986125---------89834789
Q gi|254780823|r 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRI---------NKNTPEIN 832 (1040)
Q Consensus 765 ~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le---~~~~~~~---------~~~~~~~~ 832 (1040)
.....+|-|.+......|.-|-.++...+ + .+...+.++||++|.++= .|-.++. +...+...
T Consensus 620 Hag~GiSksqld~~~~s~~~y~~~~~~~~---d--~e~~~~Ld~G~~lH~~vLEpe~f~~ef~IaPe~nrRt~aGKe~~a 694 (877)
T PRK09709 620 HAGPGVSKSQLDDIADTPALYLWRKNAPV---D--TEKTKTLDLGTAFHCRVLEPEEFSNRFIIAPEFNRRTNAGKEEEK 694 (877)
T ss_pred CCCCCCCHHHHHHHHHCHHHHHHHHCCCC---C--CCCCHHHHCCCHHHEEECCHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 26887457777778756787767642776---5--432214320332220223714304333017420133556779999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCC
Q ss_conf 99999999996532798669999999999999999999973246885999996568897882379999997888879985
Q gi|254780823|r 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 (1040)
Q Consensus 833 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~ 912 (1040)
+.|.+... .+- ......+...+..|-.+.+++-..+.---.+-..|...-+.-+..++.++.|-|-+ +...
T Consensus 695 afl~~c~~-----~Gk-t~lt~e~~~~~~~m~~s~mahP~A~~LLe~~G~AEss~YW~D~ETGllcRcRPD~~-i~e~-- 765 (877)
T PRK09709 695 AFLEECAS-----TGK-TVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKI-IPEF-- 765 (877)
T ss_pred HHHHHHHH-----CCC-EEECHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCC-CCCC--
T ss_conf 99999984-----798-53158999999999999873815789872888156767436777684566257620-1333--
Q ss_pred EEEEECCCCCCCCH--HH-HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEE-EEECCCCCCCCCCCCCCCCC-HHHHH
Q ss_conf 89997268534688--79-8423012169999999828867778557421388-86068665543456545589-88899
Q gi|254780823|r 913 VDITDYKTGDNPKK--ET-AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY-IRLKQKFKIDCITNDKKKYS-ADELS 987 (1040)
Q Consensus 913 ~~IvDYKTG~~p~~--~~-~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y-~~l~~~~~~~~~~~~~~~~~-~~~~~ 987 (1040)
-+|+|.||-.-.+. ++ ....|..|=++|.--. +.+.+..+...++ ++.+.+-...++....-... .+.-.
T Consensus 766 ~~ivDvKttad~~rF~R~i~~~rYHvQaA~Y~dG~-----~~~tG~~p~fvF~~i~~t~dcgry~VaV~~~~~e~~~~G~ 840 (877)
T PRK09709 766 HWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGY-----EAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQ 840 (877)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHCCH-----HHHCCCCCCEEEEEEEECCCCCCCCEEEEECCHHHHHHHH
T ss_conf 07987401010788888887604011456653320-----2312777743899998337778763699986888998779
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998488988
Q gi|254780823|r 988 EKSLKNLIEIVTLLQNGEQP 1007 (1040)
Q Consensus 988 ~~~~~~l~~~~~~~~~~~~~ 1007 (1040)
.+.++.|+.+..-+..++-|
T Consensus 841 ~eyrr~Lr~~Ae~l~tdeWp 860 (877)
T PRK09709 841 QEYRRNLRTLAECLNTDEWP 860 (877)
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999886038764
No 40
>KOG2108 consensus
Probab=89.13 E-value=0.33 Score=24.33 Aligned_cols=211 Identities=6% Similarity=-0.063 Sum_probs=113.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88099983456616799999998614896899824863210788864334201233333444676368999999762999
Q gi|254780823|r 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 (1040)
Q Consensus 227 ~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 306 (1040)
..+++++++|++.+.+...+..+ .+..+..++|+++..+.+++.-..-.......... .......+.+.....
T Consensus 230 ~t~vLvdEfqd~~~~qL~p~~~~----k~~~~a~tGdt~qsIy~fa~~~a~~~~l~~~f~~~---~~~~~~~lf~n~rs~ 302 (853)
T KOG2108 230 ITHVLVDEFQDILKIQLEPLQVL----KIKAFAGTGDTDQSIYKFAGKWAEIRILYVTFNKF---IATQAERLFPNNRSC 302 (853)
T ss_pred CCEEEEECCCCCCCCCCCHHHHH----HHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHCCCCC
T ss_conf 63377631344332245559998----65212011680688998732105677888760707---778899870123234
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH-HHCCCCCCCCCCCCCCCCCCEEEECCCH--HHHHHHHHHHHHHHHH
Q ss_conf 666025776664536777754442011122100-0000123567653213378159955998--9999999999999864
Q gi|254780823|r 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM-RNTDILENKIPNIQKCFSDVALIEADNE--REEAISIAIALRMSLD 383 (1040)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~a~~~--~~Ea~~ia~~lr~~~~ 383 (1040)
..... ...........++-..... ..+....+....... -...|..- ..+...+|..+.
T Consensus 303 ~~ih~---------la~~~I~~~~~~~kk~~~~~~~ps~~~~~l~~~~~-----~f~kA~~~~~~~~~~~vaa~~e---- 364 (853)
T KOG2108 303 KTIHS---------LAYGAIGRQYQEKKKLLLRKLTPSELNSVLAEFKG-----GFPKAKLKCRTEENFLVAADIE---- 364 (853)
T ss_pred HHHHH---------HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCC-----CCCCCCCCCCHHHHHHHCCCCE----
T ss_conf 78899---------99999766553010035322583003555313666-----6640222475265434215721----
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 22984999802641135788843551377766569003528898999999999837999789999862965456679389
Q gi|254780823|r 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 (1040)
Q Consensus 384 ~~~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~ 463 (1040)
--..+.+++.+...+.....+++-+.++|+..-.+.....+-..++.+..+.+..+ .+..+++.+|.-|.++.+....+
T Consensus 365 ft~n~h~~l~cs~s~~~~~~~v~ve~~~~~k~i~~~sflds~~~r~~l~~~~~~~n-~~~d~~l~~l~~~~~~~~~a~~d 443 (853)
T KOG2108 365 FTINDHAILWCSSSQLSSFESVLVEQREKYKLIAVASFLDSNERRLGLNYEKLHAN-MTPDGYLKLLQLPERPNGLAKFD 443 (853)
T ss_pred EEECCHHHHHHHHHHCCCHHHHHHHHCCCHHHEEEHHHHCHHHHHHHHHHHHHHCC-CCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 33300345432102303267899873374323210244321567777889986456-88412676503556788633000
No 41
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=82.41 E-value=2.4 Score=18.64 Aligned_cols=28 Identities=7% Similarity=-0.171 Sum_probs=22.0
Q ss_pred CCEEECCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 7379803433356658637852863113
Q gi|254780823|r 626 STLFILGTLESRLLNFDTLILGGLNEGV 653 (1040)
Q Consensus 626 ~~v~v~~~~~a~~~~~~~v~v~gl~e~~ 653 (1040)
..|.+.+.-.|+|.+++.|++.|+..-.
T Consensus 522 gkvtis~IyrAKGnEapfVy~lga~~~s 549 (660)
T COG3972 522 GKVTISRIYRAKGNEAPFVYALGAAYLS 549 (660)
T ss_pred CEEEEEEEECCCCCCCCEEEEEHHHHCC
T ss_conf 6389986331567757589996134427
No 42
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=59.85 E-value=4.6 Score=16.78 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHC-CCCHHHHHHCCHHCCH-HHHHHHHHHHHHHHHHHHH----HHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999975-9997898740022020-7999999999999999999----7532488898999999998744344
Q gi|254780823|r 149 AKNLADIIDIIETE-EKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTE----RLVELNASSPVGYQIALMRAEAEHL 222 (1040)
Q Consensus 149 A~~L~~l~d~~~~~-~~~~~~L~~l~~~~~~-~~w~~~~~fL~~~~~~~~~----~l~~~g~~d~~~~~~~~~~~~~~~~ 222 (1040)
|++|...+.++.+. .++.+.|-.+--+++- .+|...++- +++++.+ .--.+|-.+...-. + ++..-.
T Consensus 94 Aeel~~~~PEL~~iAni~a~~~~niLSENMkP~~W~~IA~~---V~~al~~G~~GVVvaHGTDTM~YTA-a---ALSFm~ 166 (413)
T TIGR02153 94 AEELARAVPELLEIANIKARAVFNILSENMKPEYWIKIAEA---VAKALEEGADGVVVAHGTDTMAYTA-A---ALSFMF 166 (413)
T ss_pred HHHHHHHCCCHHEECCCCEEEEEHHCCCCCCHHHHHHHHHH---HHHHHCCCCCEEEEEECCCHHHHHH-H---HHHHHH
T ss_conf 89998617400201243105600010778885899999999---9998408995389941587468999-9---999999
Q ss_pred HCCCCCEEEEEECCCC-----CHHHHHHHHHHH-----HCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 2276880999834566-----167999999986-----148968998248632107888643
Q gi|254780823|r 223 MKGTKGPIIIAGSTGS-----IPATARLMSTVA-----NHPNGAIVLPGLDCHIPTAIWNTI 274 (1040)
Q Consensus 223 ~~~~~~~i~v~g~~~~-----~~~~~~ll~al~-----~~~~~~~~~~~~d~~~~~~~~~~~ 274 (1040)
...-+.||++.|.|-+ +=+-.-|+.++. ......++.++-.-|..-...|+.
T Consensus 167 ~~Gl~~PvVlVGAQRSSDRPSSDAa~NL~~A~~~A~~a~~aEV~VvMHG~tsD~yc~~HRGV 228 (413)
T TIGR02153 167 KTGLPVPVVLVGAQRSSDRPSSDAALNLIAAVRAATSAPIAEVVVVMHGETSDTYCLVHRGV 228 (413)
T ss_pred HCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 71699988998574358887313799999999983369710038884012488679996582
No 43
>pfam06250 DUF1016 Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.
Probab=58.86 E-value=8.4 Score=15.09 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=41.8
Q ss_pred HCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCC-CCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 32468859999965688978823799999978888799-8589997268534688798423012169999999828
Q gi|254780823|r 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 (1040)
Q Consensus 873 ~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~d-G~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~ 947 (1040)
+-..++.-++... .+.+++.++ .||-|+..-. -+++|||.|||+-... .- -||-+|.-++.+-
T Consensus 201 ELG~GFaFvgrQ~--ri~v~~~df----yiDLlFYh~~L~c~V~IELK~g~f~pe---~~---GQl~~Yl~~~d~~ 264 (320)
T pfam06250 201 ELGAGFAFVGRQK--RIQVDDEDF----YIDLLFYHRKLRCLVAVDLKIGKFKPE---YA---GQMNFYLRYLDKH 264 (320)
T ss_pred HHCCCCEEEEEEE--EEEECCCEE----EHHHHHHHHHCCCEEEEEECCCCCCHH---HH---HHHHHHHHHHHHH
T ss_conf 8189816754557--888779323----404766634114136776415876778---88---8899999999888
No 44
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=51.12 E-value=9.7 Score=14.68 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=33.7
Q ss_pred CCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 7877379803433356658637852863113456666676489678856489996678889999999985598599
Q gi|254780823|r 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 (1040)
Q Consensus 623 ~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~~v~ 698 (1040)
+......+||+|.+.|-||++|+| +.|. ..+++|+..+ .|...+||++.+
T Consensus 676 ~~yet~famTvHKSQGSEf~~v~l------iLP~--~~S~~L~~el------------------lYTgiTRAk~~l 725 (753)
T TIGR01447 676 PNYETAFAMTVHKSQGSEFDHVAL------ILPN--EESPVLTREL------------------LYTGITRAKKQL 725 (753)
T ss_pred CCCCEEEEEEEEECCCCEEEEEEE------ECCC--CCCCCCCHHH------------------HHHHHHHHCCEE
T ss_conf 764058899876055760403567------5658--9887555456------------------665334204467
No 45
>KOG0649 consensus
Probab=41.36 E-value=16 Score=13.30 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.0
Q ss_pred CCCCCEEEEECCCCCCC
Q ss_conf 79985899972685346
Q gi|254780823|r 908 LKSGFVDITDYKTGDNP 924 (1040)
Q Consensus 908 ~~dG~~~IvDYKTG~~p 924 (1040)
.+||+++|.|-||++--
T Consensus 175 ~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649 175 AEDGTVRVWDTKTQKHV 191 (325)
T ss_pred CCCCCEEEEECCCCCEE
T ss_conf 77761798762655336
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=39.45 E-value=17 Score=13.11 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=25.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99834566167999999986148968998248
Q gi|254780823|r 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 (1040)
Q Consensus 231 ~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~ 262 (1040)
-+||+.++.|-|..++..|.+..+...++|++
T Consensus 7 ~~FGY~~FR~gQe~II~~vL~g~~~l~vmPTG 38 (607)
T TIGR01389 7 ETFGYDDFRGGQEEIIEHVLDGRDVLVVMPTG 38 (607)
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 44687767731589999984779858973899
No 47
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.86 E-value=18 Score=12.95 Aligned_cols=22 Identities=32% Similarity=0.216 Sum_probs=19.5
Q ss_pred EEEEEEECCCCCEEEEECCCCC
Q ss_conf 9978888799858999726853
Q gi|254780823|r 901 FADRIDLLKSGFVDITDYKTGD 922 (1040)
Q Consensus 901 rIDRid~~~dG~~~IvDYKTG~ 922 (1040)
|.|-|-..+-|.++||..|||-
T Consensus 50 RADLials~kGeiwIiEiKssi 71 (164)
T COG5321 50 RADLIALSPKGEIWIIEIKSSI 71 (164)
T ss_pred CCCEEEECCCCCEEEEEEECCH
T ss_conf 2000255577858999962344
No 48
>TIGR02918 TIGR02918 conserved hypothetical protein TIGR02918; InterPro: IPR014267 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=37.19 E-value=18 Score=12.93 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999984
Q gi|254780823|r 989 KSLKNLIEIVTLLQ 1002 (1040)
Q Consensus 989 ~~~~~l~~~~~~~~ 1002 (1040)
++.+.|.+.+-+|+
T Consensus 462 ~I~~~lA~~Iv~~F 475 (511)
T TIGR02918 462 EIITALAEKIVEYF 475 (511)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999989861
No 49
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=35.28 E-value=20 Score=12.69 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 468859999965688978823799999978888799858999726853468879842301216999999982
Q gi|254780823|r 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 (1040)
Q Consensus 875 ~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~ 946 (1040)
..+++++..|... =.|.||=+-++++|.++||-||-++..-. + .-||-=|-..+.+
T Consensus 146 eeG~~~v~~E~~t----------~~G~vDilg~De~G~~viiElKR~ka~~~-----A-v~QL~RYv~~l~~ 201 (253)
T COG1637 146 EEGFRPVAREYQT----------AIGKVDILGRDERGNIVIIELKRRKAGLS-----A-VSQLKRYVELLRE 201 (253)
T ss_pred HCCCEEEEEEEEC----------CCCEEEEEEECCCCCEEEEEEECCCCCCH-----H-HHHHHHHHHHCCC
T ss_conf 5754331265213----------74256799886899999999942547710-----8-9999999997053
No 50
>KOG3914 consensus
Probab=34.68 E-value=20 Score=12.69 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=9.1
Q ss_pred CCCCEEEEECCCCCCC
Q ss_conf 9985899972685346
Q gi|254780823|r 909 KSGFVDITDYKTGDNP 924 (1040)
Q Consensus 909 ~dG~~~IvDYKTG~~p 924 (1040)
+|+.++++||++|+.+
T Consensus 213 GD~tlr~Wd~~sgk~L 228 (390)
T KOG3914 213 GDKTLRLWDITSGKLL 228 (390)
T ss_pred CCCCEEEEECCCCCCC
T ss_conf 9871798761467766
No 51
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase; InterPro: IPR010032 This entry identifies a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae..
Probab=31.04 E-value=22 Score=12.35 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHHHCCCCCCC
Q ss_conf 11357888435513777665
Q gi|254780823|r 397 NLARRVKLELTRFGINIDIS 416 (1040)
Q Consensus 397 ~~~~~v~~~L~~~gipv~~s 416 (1040)
.++..+.=+|-..||-..+.
T Consensus 153 ~~~~AarVslGAlGViSqVt 172 (426)
T TIGR01679 153 DIYLAARVSLGALGVISQVT 172 (426)
T ss_pred HHHHHHHHHHHHHCHHHEEE
T ss_conf 79999988864301010011
No 52
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=27.68 E-value=16 Score=13.35 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=6.4
Q ss_pred CCHHHHCHHHHHHHHHH
Q ss_conf 90035288989999999
Q gi|254780823|r 418 GIPLSTTLHSSILTSLL 434 (1040)
Q Consensus 418 g~pL~~~p~v~~l~~ll 434 (1040)
++|...+-+-+.|-..+
T Consensus 222 ~wpvtr~~A~~~L~~Fi 238 (505)
T COG3046 222 GWPVTRTQALRALKHFI 238 (505)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 89778899999999999
No 53
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=27.64 E-value=26 Score=11.87 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=25.1
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 995599899999999999998642298499980264113578884355137
Q gi|254780823|r 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 (1040)
Q Consensus 361 ~~~a~~~~~Ea~~ia~~lr~~~~~~~~~~avv~~d~~~~~~v~~~L~~~gi 411 (1040)
++.-.++.+=-=.|+..|.++....|..++|+=|+..-...-.|.-...-|
T Consensus 167 vi~G~N~~esHPvv~~~l~~AKk~nGaKiiV~DpR~t~taksahi~AD~~i 217 (694)
T TIGR01591 167 VIIGANPAESHPVVASKLMRAKKRNGAKIIVIDPRKTETAKSAHIIADLFI 217 (694)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEE
T ss_conf 997567655543689999999850897899975888602322111011065
No 54
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=25.76 E-value=28 Score=11.65 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEC-C--------CCHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 99999999986422984999802-6--------411357888435513-777665690
Q gi|254780823|r 372 ISIAIALRMSLDENKKKSALITA-D--------RNLARRVKLELTRFG-INIDISAGI 419 (1040)
Q Consensus 372 ~~ia~~lr~~~~~~~~~~avv~~-d--------~~~~~~v~~~L~~~g-ipv~~s~g~ 419 (1040)
..++.+||.++.++. --|||+| + ....++-.+.+.+.| -||=+|||-
T Consensus 345 D~~a~lLr~a~~D~~-iKAvvLRinSPGGsv~Ase~IR~e~~~~~~~GkKPVivSMG~ 401 (614)
T TIGR00705 345 DTVAALLRKARSDPD-IKAVVLRINSPGGSVFASEIIRRELERLQARGKKPVIVSMGA 401 (614)
T ss_pred HHHHHHHHHHCCCCC-CEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 679999998707998-128998863898634287899999999982689978984350
No 55
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=25.41 E-value=29 Score=11.61 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.5
Q ss_pred CCCCCEEECCCCCCCCCCCCEEEEC
Q ss_conf 7877379803433356658637852
Q gi|254780823|r 623 EKSSTLFILGTLESRLLNFDTLILG 647 (1040)
Q Consensus 623 ~~~~~v~v~~~~~a~~~~~~~v~v~ 647 (1040)
+.......||+|++.|.+|++|+++
T Consensus 526 ~~~e~AYAmTVHKSQGSEF~~V~lv 550 (607)
T PRK10875 526 PEHETAWAMTVHKSQGSEFDHAALI 550 (607)
T ss_pred CCCCEEEEEEEECCCCCCCCCEEEE
T ss_conf 8757798855553521177967999
No 56
>pfam06319 DUF1052 Protein of unknown function (DUF1052). This family consists of several bacterial proteins of unknown function.
Probab=24.90 E-value=29 Score=11.55 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCEEEEECCCCCC
Q ss_conf 99788887998589997268534
Q gi|254780823|r 901 FADRIDLLKSGFVDITDYKTGDN 923 (1040)
Q Consensus 901 rIDRid~~~dG~~~IvDYKTG~~ 923 (1040)
|+|-+-..+.|+++||--|+|..
T Consensus 50 RaDl~al~~kGei~IVEiKSs~a 72 (158)
T pfam06319 50 RADLIALSPKGEIWIVEIKSSIE 72 (158)
T ss_pred EEEEEEECCCCCEEEEEEECCHH
T ss_conf 77799887999599999836788
No 57
>pfam06862 DUF1253 Protein of unknown function (DUF1253). This family represents the C-terminal portion (approximately 500 residues) of several hypothetical eukaryotic proteins of unknown function.
Probab=24.75 E-value=29 Score=11.53 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 1236789813322206762796899999999985118
Q gi|254780823|r 33 NFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG 69 (1040)
Q Consensus 33 ~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~ 69 (1040)
.+|.-|+.. +.|+||+|+|-+|...-+.|....+
T Consensus 27 e~RDQGftR---PKVLIL~P~R~~A~~~V~~l~~l~~ 60 (435)
T pfam06862 27 EFRDQGFTR---PKVLILLPTRNIALEVVDTLIKLLP 60 (435)
T ss_pred CCCCCCCCC---CEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 313589888---8699985878999999999998758
No 58
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=23.44 E-value=31 Score=11.37 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8809998345661679999999861489689982486321078886433
Q gi|254780823|r 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 (1040)
Q Consensus 227 ~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~ 275 (1040)
.+-|+||+.|-++.-+...+..|++.-+..++..+++.+.....|.+..
T Consensus 83 ~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~ 131 (201)
T COG1435 83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSK 131 (201)
T ss_pred CCEEEEEHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 5789996167189789999999986149889995446531328784489
No 59
>pfam09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.
Probab=22.29 E-value=33 Score=11.22 Aligned_cols=55 Identities=20% Similarity=0.120 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 7888435513777665690035288989999999998379997899998629654
Q gi|254780823|r 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 (1040)
Q Consensus 401 ~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~ 455 (1040)
.+...|.+..--..+....|..+-.+.++|++++..+..|.+...+..+...|+.
T Consensus 21 sL~~~f~~a~~i~~l~~~~P~~~~Al~RlLlail~~~~~P~d~~~W~~~~~~~~~ 75 (475)
T pfam09481 21 SLRELLLRAHEIRDLAGPRPDQQGALLRLLLAILQRAFGPEDDEEWADLWENGLP 75 (475)
T ss_pred CHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 3999960566300105899856999999999999997198999999999875898
No 60
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=22.01 E-value=33 Score=11.18 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=19.2
Q ss_pred CEEEEEEEEEEEECCCCCEEEEEC
Q ss_conf 379999997888879985899972
Q gi|254780823|r 895 GIHLTGFADRIDLLKSGFVDITDY 918 (1040)
Q Consensus 895 ~~~l~GrIDRid~~~dG~~~IvDY 918 (1040)
.+++.|++|||-..+++...|+|=
T Consensus 193 ~~~~~~~~DriY~~~~~~~~I~D~ 216 (287)
T COG0676 193 IVTFPGETDRIYLNPEPCSVIVDP 216 (287)
T ss_pred CEEECCCCCEEEECCCCCEEEECC
T ss_conf 466279732799768871698647
No 61
>pfam01939 DUF91 Protein of unknown function DUF91. The function of this prokaryotic protein is unknown.
Probab=21.55 E-value=34 Score=11.12 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=39.6
Q ss_pred CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 468859999965688978823799999978888799858999726853468879842301216999999982
Q gi|254780823|r 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 (1040)
Q Consensus 875 ~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~ 946 (1040)
..+++++..|.+-. .|.||-+-++.+|..+||-.|--+. +. .+. -||-=|--.+.+
T Consensus 121 e~G~~~v~rE~~T~----------~G~VDil~~D~~G~~VvVEvKRr~a-~i----daV-~QL~RYve~l~r 176 (228)
T pfam01939 121 EEGFKPVRREYQIA----------HGIVDILGKDEDGNIVILELKRRKA-DL----HAV-SQLKRYVDSLKE 176 (228)
T ss_pred CCCCEEEEEEEECC----------CCCEEEEEECCCCCEEEEEEEEECC-CH----HHH-HHHHHHHHHHHH
T ss_conf 48989998885258----------8736689987999999999974037-82----079-999999999865
No 62
>smart00426 TEA TEA domain.
Probab=20.69 E-value=32 Score=11.28 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=13.3
Q ss_pred EEEC---CCCCCCCHHHHHCCC
Q ss_conf 9972---685346887984230
Q gi|254780823|r 915 ITDY---KTGDNPKKETAQKLI 933 (1040)
Q Consensus 915 IvDY---KTG~~p~~~~~~~~~ 933 (1040)
|-|| |||+..+.|++.+|.
T Consensus 44 Is~yI~~kTGk~RtrKQVsSHI 65 (68)
T smart00426 44 IARYIKLRTGKTRTRKQVSSHI 65 (68)
T ss_pred HHHHHHHHHCCCCHHHHHCCCE
T ss_conf 9999999856702066643301
No 63
>KOG0322 consensus
Probab=20.44 E-value=36 Score=10.98 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred CEEEEEEEEE-EEECC--CCCEEEEECCCCCCC
Q ss_conf 3799999978-88879--985899972685346
Q gi|254780823|r 895 GIHLTGFADR-IDLLK--SGFVDITDYKTGDNP 924 (1040)
Q Consensus 895 ~~~l~GrIDR-id~~~--dG~~~IvDYKTG~~p 924 (1040)
+++| |.|+ |..+. ||+.+|.-|||+.|-
T Consensus 256 gvrI--RpD~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322 256 GVRI--RPDGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred CEEE--CCCCCEEEECCCCCCEEEEEECCCCCH
T ss_conf 5187--458737763356773789872257812
Done!