HHsearch alignment for GI: 254780823 and conserved domain: pfam01930
>pfam01930 Cas_Cas4 Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C terminus.
Probab=98.11 E-value=5.2e-05 Score=49.29 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=58.9
Q ss_pred EEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCC-CCEEEEEECCCCCCCCCCCC
Q ss_conf 99997888879985899972685346887984230121699999998288677785574-21388860686655434565
Q gi|254780823|r 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITND 977 (1040)
Q Consensus 899 ~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~-~~~~y~~l~~~~~~~~~~~~ 977 (1040)
T Consensus 54 ~g~iD~v~~~-~~~~~~vE~K~s~~~~~a~-----~~QL~~ya~~Le~~g------~~v~~G~l~y~~~rr--r~~V~lt 119 (162)
T pfam01930 54 SIKIDFVTRR-KGGLVVHEVKKSSKMEEAH-----RMQLLYYLYLLKKRG------IEAKEGVLHYPKERK--REEVELT 119 (162)
T ss_pred CEEEEEEEEE-CCEEEEEEEECCCCCCHHH-----HHHHHHHHHHHHHCC------CCCCCEEEEECCCCE--EEEEECC
T ss_conf 4899999986-9959999985589998089-----999999999999829------866617999856887--9999869
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 455898889999999999999998488988555545101566898654420
Q gi|254780823|r 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 (1040)
Q Consensus 978 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~ 1028 (1040)
T Consensus 120 ------~e~r~~~~~~i~~-i~~i~~~~~p--P~~~~-~~~C~~Csy~~~C 160 (162)
T pfam01930 120 ------EEDREELEEAIKE-IEEIISSEKP--PPPEK-KKYCKKCAYREFC 160 (162)
T ss_pred ------HHHHHHHHHHHHH-HHHHHHCCCC--CCCCC-CCCCCCCCCHHHC
T ss_conf ------9999999999999-9999847999--79998-9979899974103