HHsearch alignment for GI: 254780823 and conserved domain: pfam04257

>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=100.00  E-value=2.8e-37  Score=260.93  Aligned_cols=906  Identities=15%  Similarity=0.127  Sum_probs=476.2

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf             98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r    9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK   88 (1040)
Q Consensus         9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~   88 (1040)
T Consensus         2 l~ly~SNr-le~L~~~l~~~l~~~----p~~~P--f~~e~ivVqs~gm~~WL~~~lA~~~GI~Ani--~f~~p~~fi~~l   72 (1008)
T pfam04257         2 LTLYHSNR-LEVLADLLAKLLRLE----PLADP--FEPEIILVQSPGMARWLKLELAERNGIAANI--RFPLPASFIWQL   72 (1008)
T ss_pred             CEEEECCC-HHHHHHHHHHHHHHC----CCCCC--CCCCEEEECCHHHHHHHHHHHHHHHCEEEEE--CCCCHHHHHHHH
T ss_conf             77880478-999999999999858----88889--8899799797389999999999985947745--688999999999


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r   89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE  167 (1040)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~  167 (1040)
T Consensus        73 ~~~~l~~~~~-~~~~~~~~L~W~i~~lL~~~~~~~~~~~l~-----~yl~~~~~~~k~~qLa~~iAdlFdqY~~yRPdw-  145 (1008)
T pfam04257        73 FRAVLGDVPE-ESPFSKESLTWRLMRLLPELLDEPEFAPLR-----HYLSDDDDQLKLYQLAEKIADLFDQYLLYRPDW-  145 (1008)
T ss_pred             HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH-
T ss_conf             9985489811-288975758999999988762498749999-----997118761368899999999999998417999-


Q ss_pred             HHHHCCHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             98740022--------020799999999999999999975324888989-999999987443442276880999834566
Q gi|254780823|r  168 DLHALKNE--------KYGMWWLLAADFLKIASKYWTERLVELNASSPV-GYQIALMRAEAEHLMKGTKGPIIIAGSTGS  238 (1040)
Q Consensus       168 ~L~~l~~~--------~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~-~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~  238 (1040)
T Consensus       146 -l~~We~g~~~~~~~l~~~~~WQ~~L---------Wr~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~LP~ri~vFgis~L  214 (1008)
T pfam04257       146 -LAAWEQGEDGLIAKLPEDEAWQAIL---------WRALVAELPQLPQSLQHFIKALKKGQLPPA-KLPKRIFVFGISSL  214 (1008)
T ss_pred             -HHHHHCCCCCCCCCCCHHHHHHHHH---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCHH-HCCCEEEEECCCCC
T ss_conf             -9999769987778876415799999---------999997503477589999999864786555-29982899727858


Q ss_pred             CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf             1679999999861489689982486321078886433420---1233333444676368999999762999666025776
Q gi|254780823|r  239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN  315 (1040)
Q Consensus       239 ~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  315 (1040)
T Consensus       215 pp~~l~~L~~Ls~~~dV~l~~~nP~~~yW~di~~~~~~~~~~~~~~~~~~~~~~~~p------LLa~~Gk~grd~~~lL~  288 (1008)
T pfam04257       215 PPLYLEILQALSRHTDVHLFLLNPCREYWGDIVDRRQLLRETWLGPEDDELLLEGNP------LLASLGKQGRDFQDLLE  288 (1008)
T ss_pred             CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHCCCH------HHHHHHHHHHHHHHHHH
T ss_conf             999999999985567069995278877885530778771410137750445532687------88876186699999998


Q ss_pred             CC------------CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             66------------453677775444201112210000001235676532133781599559989999999999999864
Q gi|254780823|r  316 VS------------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD  383 (1040)
Q Consensus       316 ~~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~  383 (1040)
T Consensus       289 ~~~~~~~~~~f~~~~~~sLL~~lQ~dIl~-l~-------~~~~~~~~~~~~~D~Si~ih~chs~~REvEvL~d~LL~~l~  360 (1008)
T pfam04257       289 ELEESEEIDLFEDPKPDSLLHQLQNDILN-LR-------ARGEEGKLPLAPADRSLQIHSCHSPLREVEVLHDQLLALLA  360 (1008)
T ss_pred             HCCCCCCHHCCCCCCCCCHHHHHHHHHHC-CC-------CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             47654301126899984699999999975-67-------76755557778899807998589879999999999999985


Q ss_pred             HC----CCEEEEEECCCCHHHHHHHHH-----HHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             22----984999802641135788843-----551377766569003528898999999999837999789999862965
Q gi|254780823|r  384 EN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL  454 (1040)
Q Consensus       384 ~~----~~~~avv~~d~~~~~~v~~~L-----~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl  454 (1040)
T Consensus       361 ~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~pl~~~~~~LL~L~~sRf~~~evl~lL~~p~  440 (1008)
T pfam04257       361 ADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQENPLLSAFLQLLNLPESRFTASELLDLLEVPA  440 (1008)
T ss_pred             CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH
T ss_conf             09999842278887976887999999948998888477588275512131899999999844444788999999974979


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHCCCCCC----------CCC----CCHHHHHHHHCCCCCCCC-CCCCHHHCCCCCCH
Q ss_conf             45--66793899999997322321045577----------781----117888752201144443-45520101553432
Q gi|254780823|r  455 AK--FGFPEKYLSRAKNALELVALRGNKNS----------YDI----MDLKSLVLDRIATQKNNT-HVPHWQSRLSEEDK  517 (1040)
Q Consensus       455 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  517 (1040)
T Consensus       441 v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL~RllLG~a~~~~~~~~~~i~P~~~v~~~~~  520 (1008)
T pfam04257       441 VRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGLDRLLLGYAMPDENGIWGGILPYDDVEGLDA  520 (1008)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             89875999899999999999659555577777874279864446499999999867102777655477123477686259


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             57999999989999998750110022102378899999999999723676321114566577799999999866421376
Q gi|254780823|r  518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC  597 (1040)
Q Consensus       518 ~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  597 (1040)
T Consensus       521 ----~~lg~l~~~~~~L~---~~~~~l~~~~~~~~W~~~l~~ll~~~f~~~~~~~~~--~~~l~~~l~~~~~~~~~a~~~  591 (1008)
T pfam04257       521 ----ELLGKLAEFLDRLD---KWRDRLSQPRTLEEWLERLRQLLDDFFDPDEDDEWE--LQLLRKALADLLEDAIAAGFD  591 (1008)
T ss_pred             ----HHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf             ----99999999999999---999997289899999999999999985689202999--999999999999999856898


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
Q ss_conf             64477889999998622443356677877379803433356658637852863113456666676489678856489996
Q gi|254780823|r  598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA  677 (1040)
Q Consensus       598 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~  677 (1040)
T Consensus       592 ~~i~l~~v~~~l~~~l~~~~~~~~-fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fPR~~~~~~fDLm~~~pr~GDrsr  670 (1008)
T pfam04257       592 QPIPLEVVRDLLEERLSQQSGRQG-FLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFPRQDQPPGFDLMAKHPRLGDRSR  670 (1008)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCC-CCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCH
T ss_conf             865699999999998733355667-6778557716776678980148996799887988888999732233888889864


Q ss_pred             HHHHHHHHHHHH-HHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCCCCC-------HHHC--CC-----------
Q ss_conf             678889999999-985-5985999920467--7766566537888773147310-------0001--13-----------
Q gi|254780823|r  678 EKYIGQAAHDFE-MAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF-------FDNL--KK-----------  733 (1040)
Q Consensus       678 e~~~~~~~~~~~-~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~~~-------~~~~--~~-----------  733 (1040)
T Consensus       671 r---~dDRylFLEaLlSAr~~LyiSyvG~s~~dn~~~~PS~lV~ELldyl~~~~~~~~~~~~~~~~~~~hplqpFs~~yF  747 (1008)
T pfam04257       671 R---DDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDEALKRLLLVVEHPLQPFSPRYF  747 (1008)
T ss_pred             H---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCCHHHC
T ss_conf             5---7799999999984422089999243588989379878999999999985567763022101024469998874226


Q ss_pred             -CCCC----HHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------C
Q ss_conf             -6532----23478752101234345475-567630012467780045776428368889763288888721-------2
Q gi|254780823|r  734 -RGQC----YLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-------K  800 (1040)
Q Consensus       734 -~~~~----~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~  800 (1040)
T Consensus       748 ~~~~~~~Sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~L~~F~~~P~r~fl~~rL~i~~~~~~~~~~d~Ep  827 (1008)
T pfam04257       748 TEDGRLFSYDREWLAAAQALDGRAAPAQPFLPAPLPADEEKTISLDDLIRFLRNPARYFLRQRLGIRLEEEEEELEDDEP  827 (1008)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             99988778019999997741157777775556789877567668999999998399999997149755766666656788


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             48998899899999999998612589834789999999999965327986699999999999999999999732468859
Q gi|254780823|r  801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK  880 (1040)
Q Consensus       801 ~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  880 (1040)
T Consensus       828 f~ld~L~~y~l~~~ll~~~l~---~~~~~~~~~~~~------~~G~LP~g~~g~~~~~~~~~~~~~l~~~~~~~~~~~~-  897 (1008)
T pfam04257       828 FSLDGLDRYQLKQRLLEALLE---GKDPDDLLARLR------ARGKLPPGAFGELLLEKLLERIEALAERLRELLGGPP-  897 (1008)
T ss_pred             CCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHH------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf             678816661899999999871---899899999999------6699999678899999999999999999998715898-


Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf             99996568897882379999997888879985899972685346887984230121699999998288677785574213
Q gi|254780823|r  881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL  960 (1040)
Q Consensus       881 ~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~  960 (1040)
T Consensus       898 ---~~~~~v~l~~~~~~L~G~l~~v~--~~~--~lv~~~~~~~~-~k~~-----l~~Wl~hL~~~a~-----~~~~~-~t  958 (1008)
T pfam04257       898 ---EPPLEIDLEIDGVRLTGWLDGLY--PGE--GLVRWRPSKLK-AKDL-----LRLWLEHLALCAA-----GGGPG-ES  958 (1008)
T ss_pred             ---CCCEEEEEECCCEEEEEEECCCC--CCC--EEEEEEECCCC-HHHH-----HHHHHHHHHHHHC-----CCCCC-EE
T ss_conf             ---88835785249779999889853--787--48999705899-7789-----9999999999816-----79997-17


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8886068665543456545589888999999999999999848898
Q gi|254780823|r  961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus       961 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
T Consensus       959 ~~~~~~~~--~~~~--~~p-~~----~~~A~~~L~~ll~~y~~G~~  995 (1008)
T pfam04257       959 VLVGKDGV--VVLR--FPP-IE----PDDAKEYLAKLLALYRQGLR  995 (1008)
T ss_pred             EEEECCCC--CEEE--ECC-CC----HHHHHHHHHHHHHHHHHHHC
T ss_conf             99982885--0587--579-99----89999999999999999815