HHsearch alignment for GI: 254780823 and conserved domain: pfam04257
>pfam04257 Exonuc_V_gamma Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyses ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.
Probab=100.00 E-value=2.8e-37 Score=260.93 Aligned_cols=906 Identities=15% Similarity=0.127 Sum_probs=476.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf 98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~ 88 (1040)
T Consensus 2 l~ly~SNr-le~L~~~l~~~l~~~----p~~~P--f~~e~ivVqs~gm~~WL~~~lA~~~GI~Ani--~f~~p~~fi~~l 72 (1008)
T pfam04257 2 LTLYHSNR-LEVLADLLAKLLRLE----PLADP--FEPEIILVQSPGMARWLKLELAERNGIAANI--RFPLPASFIWQL 72 (1008)
T ss_pred CEEEECCC-HHHHHHHHHHHHHHC----CCCCC--CCCCEEEECCHHHHHHHHHHHHHHHCEEEEE--CCCCHHHHHHHH
T ss_conf 77880478-999999999999858----88889--8899799797389999999999985947745--688999999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
T Consensus 73 ~~~~l~~~~~-~~~~~~~~L~W~i~~lL~~~~~~~~~~~l~-----~yl~~~~~~~k~~qLa~~iAdlFdqY~~yRPdw- 145 (1008)
T pfam04257 73 FRAVLGDVPE-ESPFSKESLTWRLMRLLPELLDEPEFAPLR-----HYLSDDDDQLKLYQLAEKIADLFDQYLLYRPDW- 145 (1008)
T ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHH-
T ss_conf 9985489811-288975758999999988762498749999-----997118761368899999999999998417999-
Q ss_pred HHHHCCHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 98740022--------020799999999999999999975324888989-999999987443442276880999834566
Q gi|254780823|r 168 DLHALKNE--------KYGMWWLLAADFLKIASKYWTERLVELNASSPV-GYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 (1040)
Q Consensus 168 ~L~~l~~~--------~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~-~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~ 238 (1040)
T Consensus 146 -l~~We~g~~~~~~~l~~~~~WQ~~L---------Wr~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~LP~ri~vFgis~L 214 (1008)
T pfam04257 146 -LAAWEQGEDGLIAKLPEDEAWQAIL---------WRALVAELPQLPQSLQHFIKALKKGQLPPA-KLPKRIFVFGISSL 214 (1008)
T ss_pred -HHHHHCCCCCCCCCCCHHHHHHHHH---------HHHHHHHCCCCCHHHHHHHHHHHCCCCCHH-HCCCEEEEECCCCC
T ss_conf -9999769987778876415799999---------999997503477589999999864786555-29982899727858
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 1679999999861489689982486321078886433420---1233333444676368999999762999666025776
Q gi|254780823|r 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 239 ~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
T Consensus 215 pp~~l~~L~~Ls~~~dV~l~~~nP~~~yW~di~~~~~~~~~~~~~~~~~~~~~~~~p------LLa~~Gk~grd~~~lL~ 288 (1008)
T pfam04257 215 PPLYLEILQALSRHTDVHLFLLNPCREYWGDIVDRRQLLRETWLGPEDDELLLEGNP------LLASLGKQGRDFQDLLE 288 (1008)
T ss_pred CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHCCCH------HHHHHHHHHHHHHHHHH
T ss_conf 999999999985567069995278877885530778771410137750445532687------88876186699999998
Q ss_pred CC------------CCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 66------------453677775444201112210000001235676532133781599559989999999999999864
Q gi|254780823|r 316 VS------------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 (1040)
Q Consensus 316 ~~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~ 383 (1040)
T Consensus 289 ~~~~~~~~~~f~~~~~~sLL~~lQ~dIl~-l~-------~~~~~~~~~~~~~D~Si~ih~chs~~REvEvL~d~LL~~l~ 360 (1008)
T pfam04257 289 ELEESEEIDLFEDPKPDSLLHQLQNDILN-LR-------ARGEEGKLPLAPADRSLQIHSCHSPLREVEVLHDQLLALLA 360 (1008)
T ss_pred HCCCCCCHHCCCCCCCCCHHHHHHHHHHC-CC-------CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 47654301126899984699999999975-67-------76755557778899807998589879999999999999985
Q ss_pred HC----CCEEEEEECCCCHHHHHHHHH-----HHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 22----984999802641135788843-----551377766569003528898999999999837999789999862965
Q gi|254780823|r 384 EN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 (1040)
Q Consensus 384 ~~----~~~~avv~~d~~~~~~v~~~L-----~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl 454 (1040)
T Consensus 361 ~dp~L~P~DIlVm~Pdie~YaP~I~aVF~~~~~~~~iP~~iaD~~~~~~~pl~~~~~~LL~L~~sRf~~~evl~lL~~p~ 440 (1008)
T pfam04257 361 ADPTLQPRDILVMTPDIETYAPYIEAVFGRAPDGRRIPYSIADRSARQENPLLSAFLQLLNLPESRFTASELLDLLEVPA 440 (1008)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHH
T ss_conf 09999842278887976887999999948998888477588275512131899999999844444788999999974979
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHCCCCCC----------CCC----CCHHHHHHHHCCCCCCCC-CCCCHHHCCCCCCH
Q ss_conf 45--66793899999997322321045577----------781----117888752201144443-45520101553432
Q gi|254780823|r 455 AK--FGFPEKYLSRAKNALELVALRGNKNS----------YDI----MDLKSLVLDRIATQKNNT-HVPHWQSRLSEEDK 517 (1040)
Q Consensus 455 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 517 (1040)
T Consensus 441 v~~rf~l~~~dl~~i~~wl~~agirWGlD~~~r~~~~~~~~~~~TW~~gL~RllLG~a~~~~~~~~~~i~P~~~v~~~~~ 520 (1008)
T pfam04257 441 VRRRFGLDEDDLERLRQWLEEAGIRWGLDAEHRQALGLPGDEQNSWRFGLDRLLLGYAMPDENGIWGGILPYDDVEGLDA 520 (1008)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 89875999899999999999659555577777874279864446499999999867102777655477123477686259
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 57999999989999998750110022102378899999999999723676321114566577799999999866421376
Q gi|254780823|r 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 (1040)
Q Consensus 518 ~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 597 (1040)
T Consensus 521 ----~~lg~l~~~~~~L~---~~~~~l~~~~~~~~W~~~l~~ll~~~f~~~~~~~~~--~~~l~~~l~~~~~~~~~a~~~ 591 (1008)
T pfam04257 521 ----ELLGKLAEFLDRLD---KWRDRLSQPRTLEEWLERLRQLLDDFFDPDEDDEWE--LQLLRKALADLLEDAIAAGFD 591 (1008)
T ss_pred ----HHHHHHHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf ----99999999999999---999997289899999999999999985689202999--999999999999999856898
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCH
Q ss_conf 64477889999998622443356677877379803433356658637852863113456666676489678856489996
Q gi|254780823|r 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 (1040)
Q Consensus 598 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~ 677 (1040)
T Consensus 592 ~~i~l~~v~~~l~~~l~~~~~~~~-fl~G~Itfc~l~PmRsIPfkvVclLGmndg~fPR~~~~~~fDLm~~~pr~GDrsr 670 (1008)
T pfam04257 592 QPIPLEVVRDLLEERLSQQSGRQG-FLTGGVTFCTLMPMRSIPFKVVCLLGMNDGDFPRQDQPPGFDLMAKHPRLGDRSR 670 (1008)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCC-CCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCH
T ss_conf 865699999999998733355667-6778557716776678980148996799887988888999732233888889864
Q ss_pred HHHHHHHHHHHH-HHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCCCCC-------HHHC--CC-----------
Q ss_conf 678889999999-985-5985999920467--7766566537888773147310-------0001--13-----------
Q gi|254780823|r 678 EKYIGQAAHDFE-MAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF-------FDNL--KK----------- 733 (1040)
Q Consensus 678 e~~~~~~~~~~~-~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~~~-------~~~~--~~----------- 733 (1040)
T Consensus 671 r---~dDRylFLEaLlSAr~~LyiSyvG~s~~dn~~~~PS~lV~ELldyl~~~~~~~~~~~~~~~~~~~hplqpFs~~yF 747 (1008)
T pfam04257 671 R---DDDRYLFLEALLSAREHLYISYVGRSIRDNSERPPSVLVSELLDYLAQNFYLGDEALKRLLLVVEHPLQPFSPRYF 747 (1008)
T ss_pred H---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCEEECCCCCCCHHHC
T ss_conf 5---7799999999984422089999243588989379878999999999985567763022101024469998874226
Q ss_pred -CCCC----HHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCC-------C
Q ss_conf -6532----23478752101234345475-567630012467780045776428368889763288888721-------2
Q gi|254780823|r 734 -RGQC----YLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-------K 800 (1040)
Q Consensus 734 -~~~~----~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~-------~ 800 (1040)
T Consensus 748 ~~~~~~~Sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~L~~F~~~P~r~fl~~rL~i~~~~~~~~~~d~Ep 827 (1008)
T pfam04257 748 TEDGRLFSYDREWLAAAQALDGRAAPAQPFLPAPLPADEEKTISLDDLIRFLRNPARYFLRQRLGIRLEEEEEELEDDEP 827 (1008)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99988778019999997741157777775556789877567668999999998399999997149755766666656788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 48998899899999999998612589834789999999999965327986699999999999999999999732468859
Q gi|254780823|r 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 (1040)
Q Consensus 801 ~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 880 (1040)
T Consensus 828 f~ld~L~~y~l~~~ll~~~l~---~~~~~~~~~~~~------~~G~LP~g~~g~~~~~~~~~~~~~l~~~~~~~~~~~~- 897 (1008)
T pfam04257 828 FSLDGLDRYQLKQRLLEALLE---GKDPDDLLARLR------ARGKLPPGAFGELLLEKLLERIEALAERLRELLGGPP- 897 (1008)
T ss_pred CCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHH------HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 678816661899999999871---899899999999------6699999678899999999999999999998715898-
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 99996568897882379999997888879985899972685346887984230121699999998288677785574213
Q gi|254780823|r 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 (1040)
Q Consensus 881 ~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~ 960 (1040)
T Consensus 898 ---~~~~~v~l~~~~~~L~G~l~~v~--~~~--~lv~~~~~~~~-~k~~-----l~~Wl~hL~~~a~-----~~~~~-~t 958 (1008)
T pfam04257 898 ---EPPLEIDLEIDGVRLTGWLDGLY--PGE--GLVRWRPSKLK-AKDL-----LRLWLEHLALCAA-----GGGPG-ES 958 (1008)
T ss_pred ---CCCEEEEEECCCEEEEEEECCCC--CCC--EEEEEEECCCC-HHHH-----HHHHHHHHHHHHC-----CCCCC-EE
T ss_conf ---88835785249779999889853--787--48999705899-7789-----9999999999816-----79997-17
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8886068665543456545589888999999999999999848898
Q gi|254780823|r 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 (1040)
Q Consensus 961 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1006 (1040)
T Consensus 959 ~~~~~~~~--~~~~--~~p-~~----~~~A~~~L~~ll~~y~~G~~ 995 (1008)
T pfam04257 959 VLVGKDGV--VVLR--FPP-IE----PDDAKEYLAKLLALYRQGLR 995 (1008)
T ss_pred EEEECCCC--CEEE--ECC-CC----HHHHHHHHHHHHHHHHHHHC
T ss_conf 99982885--0587--579-99----89999999999999999815