HHsearch alignment for GI: 254780823 and conserved domain: pfam08696
>pfam08696 Dna2 DNA replication factor Dna2. Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways.
Probab=96.53 E-value=0.021 Score=32.11 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 467780045776428368889763288888721248998899899999999998612589834789999999999
Q gi|254780823|r 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 (1040)
Q Consensus 767 ~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~ 841 (1040)
T Consensus 57 D~LIS~T~Va~s~~C~RraVL~~r~k~~~-----~~s~~ml~GtivHelfQ~~l~~~-~~~~~~l~~~~~~~l~~ 125 (209)
T pfam08696 57 DILVSGTSVASSIQCPRRAVLQERFKGSG-----EPSKPMLIGTILHEIFQEALRAN-DFDLEFLEELADAVLEK 125 (209)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf 64254004404243661999999844689-----87534502343999999999739-99889999999999999