HHsearch alignment of GI: 254780823 and MMDB domain: 1pjr_A_287-385_549-724
>1pjr_A (A:287-385,A:549-724) PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus}
Probab=99.13 E-value=2e-09 Score=77.78 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=116.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHH
Q ss_conf 3378159955998999999999999986422---9849998026411357888435513777665690035288989999
Q gi|254780823|r 355 CFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 (1040)
Q Consensus 355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~ 431 (1040)
....+.++.+.+..+|+..|+..|.+.+... +.+|||++++......+..+|...|||+.+.++.....
T Consensus 31 ~~~~~~~~~~~~~~~ea~~i~~~i~~l~~~~g~~~~diAIL~r~~~~~~~~~~~l~~~gIP~~~~g~~~~~~-------- 102 (275)
T 1pjr_A 31 EGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKGTE-------- 102 (275)
T ss_dssp CCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETSCC-----------
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHCC--------
T ss_conf 798417995276678999999999999983898866514995154769999999998799899968965013--------
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHC
Q ss_conf 99999837999789999862965456679389999999732232104557778111788875220114444345520101
Q gi|254780823|r 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 (1040)
Q Consensus 432 ~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 511 (1040)
T Consensus 103 -------------------------------------------------------------------------------- 102 (275)
T 1pjr_A 103 -------------------------------------------------------------------------------- 102 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55343257999999989999998750110022102378899999999999723676321114566577799999999866
Q gi|254780823|r 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 (1040)
Q Consensus 512 ~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 591 (1040)
T Consensus 103 -------------------------------------------------------------------------------- 102 (275)
T 1pjr_A 103 -------------------------------------------------------------------------------- 102 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 42137664477889999998622443356677877379803433356658637852863113456666676489678856
Q gi|254780823|r 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 (1040)
Q Consensus 592 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~ 671 (1040)
.....++|+|||+|.++|++|++||+++++++.+|.......
T Consensus 103 -----------------------------~~~~~~~V~i~TiH~aKGlE~~~V~i~~~~~~~~p~~~~~~~--------- 144 (275)
T 1pjr_A 103 -----------------------------QAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLED--------- 144 (275)
T ss_dssp ---------------------------------CCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGTC---------
T ss_pred -----------------------------CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC---------
T ss_conf -----------------------------455678448974220577777879982786678864001477---------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCE-EEEEEECCC----CCCCCCCCHHHHHHHHC
Q ss_conf 4899966788899999999855985-999920467----77665665378887731
Q gi|254780823|r 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVL 722 (1040)
Q Consensus 672 l~l~~~e~~~~~~~~~~~~~~~a~~-v~lt~~~~~----~~~~~~ps~~l~~l~~~ 722 (1040)
.+......+.+|+.+++|++ ++++++... ......+|+++..+...
T Consensus 145 -----~~~~~ee~RllyVA~TRAr~~L~l~~~~~~~~~~~~~~~~~s~~~~~~~~~ 195 (275)
T 1pjr_A 145 -----DDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAH 195 (275)
T ss_dssp -----HHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHHSCGG
T ss_pred -----CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHCCHH
T ss_conf -----244799999999888378577899980603457887758998717761599