HHsearch alignment of GI: 254780823 and MMDB domain: 3h4r_A_
>3h4r_A (A:) Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12}
Probab=99.94 E-value=1.5e-27 Score=196.62 Aligned_cols=244 Identities=13% Similarity=-0.046 Sum_probs=151.5
Q ss_pred CCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 01246778004577642836888976328888872124899889989999999999861258983478999999999996
Q gi|254780823|r 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 (1040)
Q Consensus 764 ~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~ 843 (1040)
...+..+|+|.+++|..||++||+++++++++... .++.+||++|.+|+.++..............+........
T Consensus 7 ~~~~~~~S~S~l~~~~~Cp~~~~~~~~~~~~~~~~-----~~~~~G~~~H~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (265)
T 3h4r_A 7 YHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKT-----KTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEE 81 (265)
T ss_dssp ----CCBCHHHHHHHHHCHHHHHHHTTSCCCCCCC-----SCCTHHHHHHHHHSSHHHHTCC------------------
T ss_pred HCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 44899839889999985999999997378999997-----7998729999987472232123324663023456666799
Q ss_pred HHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 53279------866999999999999999999997324--6885999996568897882379999997888879985899
Q gi|254780823|r 844 EKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 (1040)
Q Consensus 844 ~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~I 915 (1040)
..... .......+..++..++.++...+.... ....... .+..+.++..++.++|+||||+ +|.+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~l~G~iD~i~---~~~~~I 156 (265)
T 3h4r_A 82 KAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAE--SSIYWEDPETGILCRCRPDKII---PEFHWI 156 (265)
T ss_dssp ----------------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSS--CCEEEECTTTCCEEEECCSEEE---GGGTEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCE--EEEEEEECCCCEEEEEEEEEEE---CCCCEE
T ss_conf 99986555316542129999999999999982954676654202314--7899997676648888899997---799748
Q ss_pred EECCCCCCCCHH---HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 972685346887---984230121699999998288677785574213888606866--554345654558988899999
Q gi|254780823|r 916 TDYKTGDNPKKE---TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF--KIDCITNDKKKYSADELSEKS 990 (1040)
Q Consensus 916 vDYKTG~~p~~~---~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 990 (1040)
||||||+.++.. +...++.+||++|++++++. .+..+....|+.+..+. ..............++..+++
T Consensus 157 iDyKTg~~~~~~~~~~~~~~~~~Ql~lY~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265)
T 3h4r_A 157 MDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQ-----FGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEY 231 (265)
T ss_dssp EEEEEESCHHHHHHHHHHHTTTHHHHHHHHHHHHH-----HSSCCEEEEEEEESSCBTTBCCEEEEECCHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHH-----CCCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 89830267776532012337799999999999984-----2999863999998335677622799968999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 999999999984889885555451015668986544
Q gi|254780823|r 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 (1040)
Q Consensus 991 ~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~ 1026 (1040)
.+.+..+...+.++..| +......|.||+|+.
T Consensus 232 ~~~~~~~~~~~~~~~~~----~~~~~~~C~~C~~k~ 263 (265)
T 3h4r_A 232 HRNLRTLSDCLNTDEWP----AIKTLSLPRWAKEYA 263 (265)
T ss_dssp HHHHHHHHHHHHTCCCC----CCCCCCCCTTCTTCC
T ss_pred HHHHHHHHHHHHCCCCC----CCCCCCCCCCCCCCC
T ss_conf 99999999999669799----986467884511000