HHsearch results for GI: 254780823 and protein with PDBid: 1w36_B
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=100.00 E-value=1.3e-44 Score=307.87 Aligned_cols=676 Identities=13% Similarity=0.003 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-------HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999999975324888989999999987443-------4422768809998345661679999999861489689
Q gi|254780823|r 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 (1040)
Q Consensus 185 ~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~-------~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~ 257 (1040)
..++..+++.|.+.+.+.|..|+......+.+.... ..-..++..|+||+|||+++.|..+|..|.....+..
T Consensus 329 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~ll~~~~~~~l~~~l~~r~~~ilVDEfQDTn~~Q~~il~~L~~~~~~~~ 408 (1180)
T 1w36_B 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEHHHCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999999999998399980999999999975212699999999639899996153239999999999971689871
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 98248632107888643342012333334446763689999997629996660257766645367777544420111221
Q gi|254780823|r 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 (1040)
Q Consensus 258 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (1040)
++..+|++|++|.||+++............. ...+.............+...+......
T Consensus 409 l~~VGDpkQSIY~FRgAd~~~~~~~~~~~~~---------------------~~~L~~N~RS~~~Il~~~N~lf~~~~~~ 467 (1180)
T 1w36_B 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHA---------------------HYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 (1180)
T ss_dssp EEEEECGGGCCCGGGTCCHHHHHHHHHHCCC---------------------EEECCEETTSCHHHHHHHHHHHHSSSST
T ss_pred EEEEECCCCEEECCCCCCHHHHHHHHHHHHH---------------------HCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8998078653303357777999999876434---------------------2024424577489999999999725221
Q ss_pred CHH-----------HCCCCCCCCCCCCCCCCCCEEEE--------CCCHHHHHHHHHHHHHHHHHH--------------
Q ss_conf 000-----------00012356765321337815995--------599899999999999998642--------------
Q gi|254780823|r 338 DMR-----------NTDILENKIPNIQKCFSDVALIE--------ADNEREEAISIAIALRMSLDE-------------- 384 (1040)
Q Consensus 338 ~~~-----------~~~~~~~~~~~~~~~~~~v~~~~--------a~~~~~Ea~~ia~~lr~~~~~-------------- 384 (1040)
... ........... ......+.+.. ......++..+|..|++....
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~I~~ll~~~~~~~~~~~~~~~~ 546 (1180)
T 1w36_B 468 FMFREIPFIPVKSAGKNQALRFVFK-GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 (1180)
T ss_dssp TSSTTSCCCCCEECGGGTTEEEEET-TEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEE
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1123345310000255544332466-666654202204666643103777899999999999998200111232145434
Q ss_pred ---CCCEEEEEECCCCHHHHHHHHHHHHCCCC-CCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf ---29849998026411357888435513777-66569003528898999999999837999789999862965456679
Q gi|254780823|r 385 ---NKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 (1040)
Q Consensus 385 ---~~~~~avv~~d~~~~~~v~~~L~~~gipv-~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~ 460 (1040)
.+.+|+|++|.......+..+|.+.|||+ .++.+..+.+++.++.++++++++.+|.+..++.++|++|+++++..
T Consensus 547 r~~~~~DIaILvR~~~~~~~i~~~L~~~gIp~~~~~~~~~~~~~~ev~~ll~ll~~l~~p~~~~~l~~~l~s~~~g~~~~ 626 (1180)
T 1w36_B 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 (1180)
T ss_dssp EECCGGGEEEEESSHHHHHHHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 67781427999715376899998898749984994673136408899999999986148453899999983734599999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38999999973223210455777811178887522011444434552010155343257999999989999998750110
Q gi|254780823|r 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 (1040)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~ 540 (1040)
++..+......+. ......... .. ......+.+.+..... .
T Consensus 627 ~l~~l~~~~~~~~-------------~~~~~~~~~-------------~~------~~~~~~~~~~l~~l~~----~--- 667 (1180)
T 1w36_B 627 DIETLNNDEHAWD-------------VVVEEFDGY-------------RQ------IWRKRGVMPMLRALMS----A--- 667 (1180)
T ss_dssp HHHHHHHCHHHHH-------------HHHHHHHHH-------------HH------HHHHHCHHHHHHHHHH----H---
T ss_pred HHHHHHHCHHHHH-------------HHHHHHHHH-------------HH------HHHHCCHHHHHHHHHH----H---
T ss_conf 9999843457789-------------999989999-------------99------9986670899999998----7---
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-----
Q ss_conf 022102378899999999999723676321114566577799999999866421376644778899999986224-----
Q gi|254780823|r 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG----- 615 (1040)
Q Consensus 541 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 615 (1040)
... ...... .. .. .. .......+.......... .-....+..++......
T Consensus 668 -------~~~------~~~l~~-~~-~~---~~---~~~~l~~l~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 722 (1180)
T 1w36_B 668 -------RNI------AENLLA-TA-GG---ER---RLTDILHISELLQEAGTQ----LESEHALVRWLSQHILEPDSNA 722 (1180)
T ss_dssp -------TTH------HHHHHH-SS-SH---HH---HHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHHHSCCCCS
T ss_pred -------HHH------HHHHHH-CC-CH---HH---HHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCH
T ss_conf -------679------999986-05-76---89---999999999999999874----2327899999999986012112
Q ss_pred -CCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCC-------CHHHHHHHHHHH
Q ss_conf -433566778773798034333566586378528631134566666764896788564899-------966788899999
Q gi|254780823|r 616 -ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-------TAEKYIGQAAHD 687 (1040)
Q Consensus 616 -~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~-------~~e~~~~~~~~~ 687 (1040)
..........+.|+|||+|.++|++|++|||+|++++.+|.................+.. ..++.....+.+
T Consensus 723 ~~~~~~~~~~~~~V~imTiHkSKGLEfpvV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~Ee~RLl 802 (1180)
T 1w36_B 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 (1180)
T ss_dssp TTBCCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45542122036706897415416766788999367567776666665310100014655465677687899888887876
Q ss_pred HHHHHCCCE-EEEEEECCCCC--CCCCCCHHH----HHHHHCCCCCCHHHCCCCCCCHHHHHHHHHC----------CC-
Q ss_conf 999855985-99992046777--665665378----8877314731000011365322347875210----------12-
Q gi|254780823|r 688 FEMANGTRH-LIYTRSLRENN--IPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY----------TT- 749 (1040)
Q Consensus 688 ~~~~~~a~~-v~lt~~~~~~~--~~~~ps~~l----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~- 749 (1040)
|+.+++|++ ++++++..... .....+.+. ..+.....+.... .+......+.. ..
T Consensus 803 YVAlTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1180)
T 1w36_B 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA-------GLRTCIEALCDDDIAWQTAQTGDN 875 (1180)
T ss_dssp HHHHTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHH-------HHHHHHHHSCSTTEEEEECCCCCC
T ss_pred HEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 3045223356899984013345776665255676678886267755414-------689988875377643224554323
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHH
Q ss_conf --------343454755676300124677800457764283688897632888----------88721248998899899
Q gi|254780823|r 750 --------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD----------FIPHFKKDPDRTDRGTL 811 (1040)
Q Consensus 750 --------~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~----------~~~~~~~~~~a~~~Gtl 811 (1040)
.....................|.|.+............. .+... +......-+.++.+||+
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ga~~Gt~ 954 (1180)
T 1w36_B 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP-RLDVDAAGVASVVEEPTLTPHQFPRGASPGTF 954 (1180)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCEEEESSCSSSCSSCTTHHHHCT-TSCTTCCCCCCSCCCSSCCGGGSCCSHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
T ss_conf 33345655411212212455655432203726664401345554454-54555334421002776780014763768999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCEEEEEEE
Q ss_conf 99999999861258983478999999999996532798669999999999999999999973----2--46885999996
Q gi|254780823|r 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK----I--QSSIEKIFVNI 885 (1040)
Q Consensus 812 vH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~E~ 885 (1040)
+|++||.+-- ..... ... +.+.+......... ...+...+..++..... + .........|.
T Consensus 955 ~H~ilE~ldf--~~~~~---~~~----i~~~l~~~~~~~~~----~~~~~~~l~~~l~~pL~~~~~~l~~~~~~~~~~E~ 1021 (1180)
T 1w36_B 955 LHSLFEDLDF--TQPVD---PNW----VREKLELGGFESQW----EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 (1180)
T ss_dssp HHHHTTSCCS--SSCCC---HHH----HHHHHHHTTCCGGG----HHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEEE
T ss_pred HHHHHHHCCC--CCCCC---HHH----HHHHHHHCCCCHHH----HHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCEEEC
T ss_conf 9999984899--99999---999----99999854997022----59999999999808587767665447720216501
Q ss_pred EEEEEECCC----------------------------CEEEEEEEEEEEECCCCCEEEEECCCCCC---CC---HHH---
Q ss_conf 568897882----------------------------37999999788887998589997268534---68---879---
Q gi|254780823|r 886 PAKMAIESI----------------------------GIHLTGFADRIDLLKSGFVDITDYKTGDN---PK---KET--- 928 (1040)
Q Consensus 886 ~~~~~i~~~----------------------------~~~l~GrIDRid~~~dG~~~IvDYKTG~~---p~---~~~--- 928 (1040)
+|.+++... ...|+|+||+|... ||+++||||||... ++ .+.
T Consensus 1022 ~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~G~IDlvf~~-dg~~~IvDYKTd~lg~~~~~y~~~~l~~ 1100 (1180)
T 1w36_B 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 (1180)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSCCCEEEEEEEEEEEEBS-SSCBCCEEEECCCCCSSGGGSBHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 532225622028889999973363001254323435414699999999999-9999999727899899841029999999
Q ss_pred --HHCCCCCCHHHHHHHHHHCC---CCCC-CCCCCCCEEEEEECCC
Q ss_conf --84230121699999998288---6777-8557421388860686
Q gi|254780823|r 929 --AQKLIDPQLSLEAAALKAGS---FSQI-DCRKVANLFYIRLKQK 968 (1040)
Q Consensus 929 --~~~~~~~QL~lY~~~~~~~~---~~~~-~~~~~~~~~y~~l~~~ 968 (1040)
...+|..|+.+|++++.+-- +.+. .....||..|+.+++=
T Consensus 1101 ~m~~~~Y~lQ~~lY~~AL~r~L~~r~~~y~~~~h~Gg~~YlFlRG~ 1146 (1180)
T 1w36_B 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 (1180)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCCCCEEEESSSC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCC
T ss_conf 9887861999999999999997070779874551782799994798