HHsearch results for GI: 254780823 and protein with PDBid: 2is6_A
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=100.00 E-value=2.2e-29 Score=207.71 Aligned_cols=598 Identities=11% Similarity=0.045 Sum_probs=316.8
Q ss_pred CCCCCEEEECCCCCHHHHHH-HHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEH
Q ss_conf 88884898389889379999-99971121011236789813322206762796899999999985118886514033125
Q gi|254780823|r 3 NKKPNVFTIAPSSPFFREMI-PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 (1040)
Q Consensus 3 ~~~~~v~~~~~~~~fl~~~a-~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~ 81 (1040)
.+.|.+-.-.||.. +|.. ...+...+ . -.+.+|+ ++++|+.|+.||..|++++.+..+. ..--+.|.|+
T Consensus 21 ~~~~~lV~AgAGSG--KT~tL~~ri~~Li-~---~~~~~p~---~Il~lTFT~~Aa~E~~~Ri~~~l~~-~~~~v~v~Tf 90 (680)
T 2is6_A 21 PRSNLLVLAGAGSG--KTRVLVHRIAWLM-S---VENCSPY---SIMAVTFTNKAAAEMRHRIGQLMGT-SQGGMWVGTF 90 (680)
T ss_dssp CSSCEEEECCTTSS--HHHHHHHHHHHHH-H---TSCCCGG---GEEEEESSHHHHHHHHHHHHHHHCS-CCTTCEEEEH
T ss_pred CCCCEEEEEECCHH--HHHHHHHHHHHHH-H---HCCCCHH---HEEEECCHHHHHHHHHHHHHHHCCC-CCCCEEEEEH
T ss_conf 99998999848648--9999999999999-8---0999950---3988802199999999999987077-7678099649
Q ss_pred HHHHHHHHHCCCCCCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77656554045433467788-8-881899999999999998631000000122321113569788999899999999999
Q gi|254780823|r 82 GDVVEEKFTADLLLSYNLNP-P-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 (1040)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~ 159 (1040)
++|+...+........-.+. . ++..++...+.+++..+.. +.. .... ..........
T Consensus 91 Hsf~~~il~~~~~~~~~~~~~~i~d~~~~~~li~~~~~~~~~-------~~~-------~~~~-------~~~~~~~~~~ 149 (680)
T 2is6_A 91 HGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNL-------DEK-------QWPP-------RQAMWYINSQ 149 (680)
T ss_dssp HHHHHHHHHHTTTTTTCCTTCEEECHHHHHHHHHHHHHHTTC-------CTT-------TSCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCC-------CCC-------CCCH-------HHHHHHHHHH
T ss_conf 999999999979981999898764899999999999997188-------711-------0348-------9999998877
Q ss_pred HHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHCCCCCEEEEEE
Q ss_conf 97599978987400220207999999999999999999753248889899999999874434-----4227688099983
Q gi|254780823|r 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234 (1040)
Q Consensus 160 ~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-----~~~~~~~~i~v~g 234 (1040)
...+..+.++.... ...+.. +..++..|...+...+..+............... .-...+.+|+||+
T Consensus 150 ~~~~~~~~~~~~~~----~~~~~~----~~~~~~~y~~~~~~~~~~~f~~~~~~~~~l~~~~~~i~~~~~~~~~~i~vDE 221 (680)
T 2is6_A 150 KDEGLRPHHIQSYG----NPVEQT----WQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDE 221 (680)
T ss_dssp HHTTCCTTTCCCSS----CHHHHH----HHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESS
T ss_pred HHCCCCHHHHHHCC----CHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHH
T ss_conf 65259999998635----889999----9999999999998869978688999999998609999999997547002066
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 45661679999999861489689982486321078886433420123333344467636899999976299966602577
Q gi|254780823|r 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 (1040)
Q Consensus 235 ~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 314 (1040)
+||+++.|..++..+.+. +..++..+|+++..+.|+++............. .. ....+.
T Consensus 222 ~QD~~~~q~~~l~~l~~~--~~~~~~vGD~~QsIy~frga~~~~~~~~~~~~~-----------------~~--~~~~L~ 280 (680)
T 2is6_A 222 FQDTNNIQYAWIRLLAGD--TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP-----------------GA--ETIRLE 280 (680)
T ss_dssp GGGCCHHHHHHHHHHHTT--TCEEEEEECGGGCCCGGGTCCTHHHHHHHHHST-----------------TC--EEEECC
T ss_pred HHHHHHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHCCHHHHHHHHHHHHCC-----------------CC--EEEECC
T ss_conf 666799999999876357--874278548576444650035789999998778-----------------98--699789
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC--CCEEEEE
Q ss_conf 66645367777544420111221000000123567653213378159955998999999999999986422--9849998
Q gi|254780823|r 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALI 392 (1040)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~--~~~~avv 392 (1040)
........-.............. ..............+.++.+.+...|+..|+..+....... ..+++|+
T Consensus 281 ~NyRs~~~I~~~an~l~~~~~~~-------~~~~l~~~~~~~~~i~~~~~~~~~~e~~~i~~~i~~~~~~g~~~~diaiL 353 (680)
T 2is6_A 281 QNYRSTSNILSAANALIENNNGR-------LGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAIL 353 (680)
T ss_dssp BCCSSCHHHHHHHHHHHHTSSSC-------CCCCCBCCSCCCSCEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 87798789999999999727333-------56533455678996279945986899999999999998759975673448
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02641135788843551377766569003528898999999999837999789999862965456679389999999732
Q gi|254780823|r 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 (1040)
Q Consensus 393 ~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~ 472 (1040)
++.......+...|...|||+.+.++..+.+++.+.+++++++++.++.+..++.+++++|+.+.+..............
T Consensus 354 ~r~~~~~~~l~~~L~~~~Ip~~~~~~~~~~~~~ev~~~l~~l~~l~~~~d~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 433 (680)
T 2is6_A 354 YRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDR 433 (680)
T ss_dssp ESSGGGHHHHHHHHHHTTCCEEECSSSCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 74067799999999976998899589761034999999999999809886699999983533488999999999988741
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 23210455777811178887522011444434552010155343257999999989999998750110022102378899
Q gi|254780823|r 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 (1040)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~ 552 (1040)
... +........... ............+.+....... .........
T Consensus 434 ~~~------------~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 479 (680)
T 2is6_A 434 QLT------------LWQACRELLQEK-----------ALAGRAASALQRFMELIDALAQ-----------ETADMPLHV 479 (680)
T ss_dssp TCC------------HHHHHHHHHTTT-----------CSCHHHHHHHHHHHHHHHHHHH-----------HTSSSCHHH
T ss_pred HHH------------HHHHHHHHHHHH-----------HCCHHHHHHHHHHHHHHHHHHH-----------HHHCCCHHH
T ss_conf 025------------788888764310-----------0134568999999998777888-----------741020578
Q ss_pred HHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf 99999999---9723676321114566577799999999866421376-6447788999999862244335667787737
Q gi|254780823|r 553 WTKLTVTC---LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 (1040)
Q Consensus 553 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 628 (1040)
........ ........ ... ..................... .......+...+................++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~V 554 (680)
T 2is6_A 480 QTDRVIKDSGLRTMYEQEK--GEK---GQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAV 554 (680)
T ss_dssp HHHHHHHHTSHHHHHHTTC--SHH---HHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHTGGGCSCCCSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCC--CHH---HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 9999987666799987324--756---67888999999999998763154210137999999987520234346779959
Q ss_pred EECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCC-
Q ss_conf 9803433356658637852863113456666676489678856489996678889999999985598-59999204677-
Q gi|254780823|r 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLREN- 706 (1040)
Q Consensus 629 ~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~~- 706 (1040)
.|||+|.++|++||+|||+|+++|.||.....+. .+...+..+.+|+.+++|+ +++++++....
T Consensus 555 ~l~TiH~sKGLEfd~Vil~~~~~g~fP~~~~~~~--------------~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~ 620 (680)
T 2is6_A 555 QLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDE--------------GGRLEEERRLAYVGVTRAMQKLTLTYAETRRL 620 (680)
T ss_dssp EEEEHHHHTTCCEEEEEECCCBTBTTTBHHHHSS--------------SSTHHHHHHHHHHHHTTEEEEEEEEEEEEEEE
T ss_pred EEEEHHCCCCCCCCEEEEECCCCCCCCCCCCCCC--------------CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCC
T ss_conf 9951420011258889996781899875245887--------------42169999899989836845789998660233
Q ss_pred ---CCCCCCCHHHHHHH
Q ss_conf ---76656653788877
Q gi|254780823|r 707 ---NIPTIASRWLQRLL 720 (1040)
Q Consensus 707 ---~~~~~ps~~l~~l~ 720 (1040)
.....||+|+.++.
T Consensus 621 ~g~~~~~~pS~Fl~Ei~ 637 (680)
T 2is6_A 621 YGKEVYHRPSRFIGELP 637 (680)
T ss_dssp TTEEECCCBCHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 66767789985298853