HHsearch results for GI: 254780823 and protein with PDBid: 3dmn_A
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=97.19 E-value=0.00045 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf 877379803433356658637852863113456666676489678856489996678889999999985598-5999920
Q gi|254780823|r 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRS 702 (1040)
Q Consensus 624 ~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~ 702 (1040)
..+.|.++|+|.++|++|++||++|+++...|.. + ..+.+|..+++|+ ++++++.
T Consensus 98 ~~~~I~v~Tih~~KGlEfd~Vil~~~~~~~~~~~--------------------~----~~~llYVa~TRAk~~L~i~~~ 153 (174)
T 3dmn_A 98 LAPGVIVVPSFLAKGLEFDAVIVWNANQENYQRE--------------------D----ERQLLYTICSRAMHELTLVAV 153 (174)
T ss_dssp CCSSEEEEEGGGCTTCCEEEEEEETCBTTTSCSG--------------------G----GHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCH--------------------H----HHHHHHHHHHHCCCEEEEEEC
T ss_conf 5684799860303676479999956610334685--------------------5----654652145010028999989
Q ss_pred CCCCCCCCCCCHHHHHHH
Q ss_conf 467776656653788877
Q gi|254780823|r 703 LRENNIPTIASRWLQRLL 720 (1040)
Q Consensus 703 ~~~~~~~~~ps~~l~~l~ 720 (1040)
. .+|+|+.++.
T Consensus 154 ~-------~~s~~l~~~~ 164 (174)
T 3dmn_A 154 G-------SLSPLLARVN 164 (174)
T ss_dssp S-------SBCGGGTTSC
T ss_pred C-------CCCHHHHHCC
T ss_conf 9-------9899898479