Query gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 1040
No_of_seqs 295 out of 1249
Neff 10.5
Searched_HMMs 23785
Date Mon May 30 13:00:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780823.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w36_C RECC, exodeoxyribonucle 100.0 0 0 351.6 68.0 910 9-1005 2-1031(1122)
2 1w36_B RECB, exodeoxyribonucle 100.0 1.3E-44 0 307.9 47.5 676 185-968 329-1146(1180)
3 1pjr_A PCRA; DNA repair, DNA r 100.0 3.4E-31 1.4E-35 219.6 38.6 599 3-720 23-642 (724)
4 2is6_A DNA helicase II; hydrol 100.0 2.2E-29 9.3E-34 207.7 39.9 598 3-720 21-637 (680)
5 1uaa_A REP helicase, protein ( 100.0 4.6E-28 1.9E-32 199.1 43.0 603 4-720 15-634 (673)
6 3h4r_A Exodeoxyribonuclease 8; 99.6 1.6E-16 6.8E-21 123.3 5.8 172 768-947 11-191 (265)
7 3l0a_A Putative exonuclease; R 99.5 5.1E-13 2.1E-17 100.4 12.3 216 768-1030 17-249 (266)
8 3dmn_A Putative DNA helicase; 97.2 0.00045 1.9E-08 41.7 5.1 66 624-720 98-164 (174)
9 2vld_A NUCS, UPF0286 protein p 93.6 0.23 9.8E-06 23.9 7.9 56 875-946 142-197 (251)
10 3dnx_A Uncharacterized protein 17.7 25 0.001 10.6 3.1 21 901-921 42-62 (153)
No 1
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=100.00 E-value=0 Score=351.57 Aligned_cols=910 Identities=12% Similarity=0.079 Sum_probs=500.0
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHHHHHHHH
Q ss_conf 98389889379999999711210112367898133222067627968999999999851188865140331257765655
Q gi|254780823|r 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 (1040)
Q Consensus 9 ~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~~~~~~~ 88 (1040)
|+|..+.- ++.|++.|..-.... ...+| |...+|||||+.+++||+..|+++.|..+.+ ++.+.+.|....
T Consensus 2 l~~~~Sn~-~e~L~~~l~~~l~~~----~~~~p--f~~~~iiV~s~~~~~wL~~~lA~~~gi~an~--~f~~p~~~~~~~ 72 (1122)
T 1w36_C 2 LRVYHSNR-LDVLEALMEFIVERE----RLDDP--FEPEMILVQSTGMAQWLQMTLSQKFGIAANI--DFPLPASFIWDM 72 (1122)
T ss_dssp EEEEEESC-HHHHHHHHHHHHHSS----CCCCS--SCCCBEECSSHHHHHHHHHHHHHTTSCBCCC--BCCCHHHHHHHH
T ss_pred CEEECCCC-HHHHHHHHHHHHHHC----CCCCC--CCCCEEEECCHHHHHHHHHHHHHHHCCEEEE--CCCCHHHHHHHH
T ss_conf 77880589-999999999999858----78899--9999788797479999999999984907744--689999999999
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 40454334677888881899999999999998631-00000012232111356978899989999999999997599978
Q gi|254780823|r 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 (1040)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~r~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~~~~~~~~ 167 (1040)
...-...... ..+.++..-.+.+++++....... .... ...+....+..+.+.+|..|+++|++|..++.+|
T Consensus 73 ~~~~l~~~~~-~~~~~~~~l~w~l~~~L~~~~~~~~~~~l-----~~yl~~~~~~~r~~~la~~iA~lf~qY~~yRp~~- 145 (1122)
T 1w36_C 73 FVRVLPEIPK-ESAFNKQSMSWKLMTLLPQLLEREDFTLL-----RHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDW- 145 (1122)
T ss_dssp HHHHSSSCCS-SCTTCHHHHHHHHHHHHHHHCSSSTTHHH-----HHHTTSSCSSHHHHHHHHHHHHHHHHHTTSSHHH-
T ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHH-
T ss_conf 9985389854-58997440399999998987528460999-----9987058740279999999999999998626999-
Q ss_pred HHHHCCH------HCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCC
Q ss_conf 9874002------20207999999999999999999753248--889899999999874434422--7688099983456
Q gi|254780823|r 168 DLHALKN------EKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTG 237 (1040)
Q Consensus 168 ~L~~l~~------~~~~~~w~~~~~fL~~~~~~~~~~l~~~g--~~d~~~~~~~~~~~~~~~~~~--~~~~~i~v~g~~~ 237 (1040)
|..-.. -.....||..+ ...+.+ .....+ ...+.......+......... .-+.+|+|+|.+.
T Consensus 146 -l~~W~~~~~~~~~~~~~~WQ~~L--wr~L~~----~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~lp~r~~vfg~s~ 218 (1122)
T 1w36_C 146 -LAQWETGHLVEGLGEAQAWQAPL--WKALVE----YTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA 218 (1122)
T ss_dssp -HHHHHTTCCCTTCCTTHHHHHHH--HHHHHH----HHHHTTCCCCCSTTTHHHHHHHHHSCTTCCCSCCSEEEEESCCC
T ss_pred -HHHHHCCCCCCCCCHHHHHHHHH--HHHHHH----HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf -99987599876787235569999--999998----63002687567799999999987426666324886589850464
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-------------------------CCCCCCCCCCCH
Q ss_conf 6167999999986148968998248632107888643342012-------------------------333334446763
Q gi|254780823|r 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN-------------------------ITSSNTTYSTHP 292 (1040)
Q Consensus 238 ~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~ 292 (1040)
+++.+..+++++++..+.+.++.++|..++.+.-......... .........+||
T Consensus 219 l~~~~l~~l~aLs~~~~v~l~~~~P~~~~w~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 298 (1122)
T 1w36_C 219 LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNP 298 (1122)
T ss_dssp CCHHHHHHHHHHTTTSEEEEEEECSCSSCCSCCCCHHHHTTTSCCBEESSSSCBCCSSTTHHHHSSTTCSSSSCSCCSCH
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHCCCCH
T ss_conf 89999999999853698699716868898864058888898999887653200111210122445420475212203786
Q ss_pred HHHHHHHHHHCCCCHHHCCC------------CCCCCCCCHHHHHHHHHHH--CCCCCCC-HHHCCCCCCCCCCCCCCCC
Q ss_conf 68999999762999666025------------7766645367777544420--1112210-0000012356765321337
Q gi|254780823|r 293 QYSLAKLLDFLDIKREDVKR------------LGNVSNEMYGRSMVISKSF--LPPDTSD-MRNTDILENKIPNIQKCFS 357 (1040)
Q Consensus 293 ~~~~~~l~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~a~~~~-~~~~~~~~~~~~~~~~~~~ 357 (1040)
. +..+|...++... ..................+ .+..... ...................
T Consensus 299 l------La~~G~~gr~~~~l~~~~~~~~~~~~f~~~~~~sll~~~q~~il~l~~~~~~~~~~~~~~~~~~~~~~~~~D~ 372 (1122)
T 1w36_C 299 L------LASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDS 372 (1122)
T ss_dssp H------HHHHTHHHHHHHHHHTTCSSEEEEECCCCCCSCSHHHHHHHHHHHTCCCCCCCCSHHHHHCCTTSEECCTTCC
T ss_pred H------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 9------9987376799999986046642100257888630678788788752102111343011011002477888999
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHC----CCEEEEEECCCCHHHHHHHH-HH----HHCCCCCCCCCCHHHHCHHHH
Q ss_conf 8159955998999999999999986422----98499980264113578884-35----513777665690035288989
Q gi|254780823|r 358 DVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE-LT----RFGINIDISAGIPLSTTLHSS 428 (1040)
Q Consensus 358 ~v~~~~a~~~~~Ea~~ia~~lr~~~~~~----~~~~avv~~d~~~~~~v~~~-L~----~~gipv~~s~g~pL~~~p~v~ 428 (1040)
+|+++.|+++.+|++.+++.|++..... +++|+|++||...+.++..+ +. ..+||++++++.++..+|.+.
T Consensus 373 SI~i~~~~s~~rEvE~l~~~Il~ll~~~~~l~p~DIaVl~pdi~~Y~p~I~avF~~~~~~~~IP~~i~~~~~~~~~pl~~ 452 (1122)
T 1w36_C 373 SITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLE 452 (1122)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHHHHHSTTCCGGGEEEEESCHHHHHHHHHHHTSCCSSTTCCCCEECSEETGGGCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHCCHHHH
T ss_conf 88999759989999999999999974288888212678728879889999998610245678872413520432058999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHCCCCC-------------CCCCC-CHHHHH
Q ss_conf 9999999983799978999986296545--6679389999999732232104557-------------77811-178887
Q gi|254780823|r 429 ILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRGNKN-------------SYDIM-DLKSLV 492 (1040)
Q Consensus 429 ~l~~ll~~~~~~~~~~~l~~LL~sPl~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~l~~~~ 492 (1040)
.+++++++..++++..+++++|++|.+. ++.+.........-......+.+.. ...+. .+....
T Consensus 453 ~l~~lL~l~~~r~~~~~vl~lL~~p~l~~~f~l~~~~~~~l~~~~~~~gir~g~~~~~~~~~~~~~~~~~tw~~~l~Rll 532 (1122)
T 1w36_C 453 AFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRML 532 (1122)
T ss_dssp HHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSCHHHHHHTTCCCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99999987417999999999976814232138987899999999998087657435667876045211134877677776
Q ss_pred HHHCCCCCCC-CCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5220114444-345520101553432579999999899999987501100221023788999999999997236763211
Q gi|254780823|r 493 LDRIATQKNN-THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 (1040)
Q Consensus 493 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 571 (1040)
.......... ................ +...+...+..+... ........++.+|...+...++.........
T Consensus 533 lg~~~~~~~~~~~~~~p~~~~~~~~~~----~l~~~~~~l~~L~~~---~~~l~~~~t~~~w~~~l~~lL~~~~~~~~~~ 605 (1122)
T 1w36_C 533 LGYAMESAQGEWQSVLPYDESSGLIAE----LVGHLASLLMQLNIW---RRGLAQERPLEEWLPVCRDMLNAFFLPDAET 605 (1122)
T ss_dssp HHHSSCSTTCCSSSCCCCTTSCSSTHH----HHHHHHHHHHHHHHH---HHHTSSCEEHHHHTTHHHHHHHHHCCCCSHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 543201345564123450012222699----999999999999999---9997188989999999999999974888668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf 14566577799999999866421376644778899999986224433566778773798034333566586378528631
Q gi|254780823|r 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 (1040)
Q Consensus 572 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e 651 (1040)
.. ........+....+..........++...+..++...+........... ++|+|++++.+++.+|++|+++|+||
T Consensus 606 ~~--~~~~~~~~l~~l~~~~~~~~~~~~l~l~~~~~~L~~~l~~~~~~~~~~~-~~V~v~tl~~~R~ipfkvVfllGlnd 682 (1122)
T 1w36_C 606 EA--AMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMND 682 (1122)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTS-SSCEEECCCTTCCCCEEEEEEECCBT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCEEEECCHHHCCCCCCEEEEEECCC
T ss_conf 99--9999999999999999872367643899999999987401345678989-97698112553578867699973366
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEECCC--CCCCCCCCHHHHHHHHCCCCCCH
Q ss_conf 13456666676489678856489996678889999999985-5985999920467--77665665378887731473100
Q gi|254780823|r 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF 728 (1040)
Q Consensus 652 ~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~-~a~~v~lt~~~~~--~~~~~~ps~~l~~l~~~~~~~~~ 728 (1040)
|.||.....++|.....+...|.+..... ..+.+|..++ +..++++||+..+ ++.+..||.++.++.........
T Consensus 683 g~fP~~~~~~~fdl~~~~~~~gd~~~~~e--dr~lfl~al~sA~~~L~lSy~~~~~~~~~~~~PS~~l~eL~d~l~~~~~ 760 (1122)
T 1w36_C 683 GVYPRQLAPLGFDLMSQKPKRGDRSRRDD--DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHY 760 (1122)
T ss_dssp TTSSCCCCCCSSCHHHHSCCTTCCCHHHH--HHHHHHHHHHHEEEEEEEEEECBCSSSCCBCCBCHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCHHHHH--HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 75766566666531544236688106578--9999999999754423144412327899834877899999999974235
Q ss_pred HHCCCC------------------------------C---CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 001136------------------------------5---3223478752101234345475567630012467780045
Q gi|254780823|r 729 DNLKKR------------------------------G---QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 (1040)
Q Consensus 729 ~~~~~~------------------------------~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lS~S~l 775 (1040)
...... . .....+....... .........+.....+..+|+|.+
T Consensus 761 ~~~~~~~~~~~~~~~~~~~l~~~h~l~~fs~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ls~s~L 837 (1122)
T 1w36_C 761 LPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQA---GKAHSEFVQPLPFTLPETVPLETL 837 (1122)
T ss_dssp CSSCSSSCHHHHHHHHHHHHCCBCCSSTTSGGGSSSSTTCCSCGGGHHHHTTC---CCCCCCSCCCCCCCCCSCEEHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 77743346320046788654012667888855530043234409998763254---556764456899877884489999
Q ss_pred HHHHCCHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7764283688897632888887212-------489988998999999999986125898347899999999999653279
Q gi|254780823|r 776 KQLINDPYAVYARRILKLDFIPHFK-------KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 (1040)
Q Consensus 776 ~~~~~cP~~~~~~~~l~l~~~~~~~-------~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 848 (1040)
++|.+||++||++++|++...+... ..+++..++++.|.+|+.+... ...+.....+.. ....+
T Consensus 838 ~~f~~~P~~~fl~~~L~~~~~~~~~~~~d~Ep~~ld~L~~~~l~~~ll~~~l~~---~~~~~~~~~~~~------~g~LP 908 (1122)
T 1w36_C 838 QRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQ---DDAERLFRRFRA------AGDLP 908 (1122)
T ss_dssp HHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHH------HTCSC
T ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CCHHHHHHHHHH------CCCCC
T ss_conf 999979689999974488886212245556866677065524999999998718---999999999997------59999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHH
Q ss_conf 86699999999999999999999732468859999965688978823799999978888799858999726853468879
Q gi|254780823|r 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 (1040)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~ 928 (1040)
+......++.+....+..++.......... .+.++.+.++ +++|+|+||+|. +|| +|.|++|+... ++
T Consensus 909 ~g~~g~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~l~~~--~~~L~G~l~~v~--~~~---~v~~~~~~~~~-~~ 976 (1122)
T 1w36_C 909 YGAFGEIFWETQCQEMQQLADRVIACRQPG----QSMEIDLACN--GVQITGWLPQVQ--PDG---LLRWRPSLLSV-AQ 976 (1122)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTCCCC----EEEEEEEEET--TEEEEEEEEEEC--SSE---EEEECSSCCCH-HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEC--CEEEEEEECCCC--CCC---EEEEEECCCCH-HH
T ss_conf 825569999999999999999998706888----8634898409--889999889862--683---59997278987-88
Q ss_pred HHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 84230121699999998288677785574213888606866554345654558988899999999999999984889
Q gi|254780823|r 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 (1040)
Q Consensus 929 ~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1005 (1040)
. .++.++-+++...+. ......++ +.+...... ..+ .++....|..++.-|..|.
T Consensus 977 ~-----l~~wl~hL~~~a~~~------~~~~~~~~--~~~~~~~~~-----p~~----~~~A~~~L~~l~~~~~~g~ 1031 (1122)
T 1w36_C 977 G-----MQLWLEHLVYCASGG------NGESRLFL--RKDGEWRFP-----PLA----AEQALHYLSQLIEGYREGM 1031 (1122)
T ss_dssp H-----HHHHHHHHHHHHTSC------CCEEEEEC--GGGCEEEEC-----CCC----HHHHHHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHHHHHHHCCC------CCCEEEEE--ECCCEEEEC-----CCC----HHHHHHHHHHHHHHHHHHH
T ss_conf 9-----999999999982699------99728999--769679989-----989----7999999999999999983
No 2
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=100.00 E-value=1.3e-44 Score=307.87 Aligned_cols=676 Identities=13% Similarity=0.003 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-------HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 999999999999975324888989999999987443-------4422768809998345661679999999861489689
Q gi|254780823|r 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 (1040)
Q Consensus 185 ~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~-------~~~~~~~~~i~v~g~~~~~~~~~~ll~al~~~~~~~~ 257 (1040)
..++..+++.|.+.+.+.|..|+......+.+.... ..-..++..|+||+|||+++.|..+|..|.....+..
T Consensus 329 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~ll~~~~~~~l~~~l~~r~~~ilVDEfQDTn~~Q~~il~~L~~~~~~~~ 408 (1180)
T 1w36_B 329 TRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETA 408 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTTHHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEHHHCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999999999999998399980999999999975212699999999639899996153239999999999971689871
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 98248632107888643342012333334446763689999997629996660257766645367777544420111221
Q gi|254780823|r 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 (1040)
Q Consensus 258 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 337 (1040)
++..+|++|++|.||+++............. ...+.............+...+......
T Consensus 409 l~~VGDpkQSIY~FRgAd~~~~~~~~~~~~~---------------------~~~L~~N~RS~~~Il~~~N~lf~~~~~~ 467 (1180)
T 1w36_B 409 LLLIGDPKQAIYAFRGADIFTYMKARSEVHA---------------------HYTLDTNWRSAPGMVNSVNKLFSQTDDA 467 (1180)
T ss_dssp EEEEECGGGCCCGGGTCCHHHHHHHHHHCCC---------------------EEECCEETTSCHHHHHHHHHHHHSSSST
T ss_pred EEEEECCCCEEECCCCCCHHHHHHHHHHHHH---------------------HCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8998078653303357777999999876434---------------------2024424577489999999999725221
Q ss_pred CHH-----------HCCCCCCCCCCCCCCCCCCEEEE--------CCCHHHHHHHHHHHHHHHHHH--------------
Q ss_conf 000-----------00012356765321337815995--------599899999999999998642--------------
Q gi|254780823|r 338 DMR-----------NTDILENKIPNIQKCFSDVALIE--------ADNEREEAISIAIALRMSLDE-------------- 384 (1040)
Q Consensus 338 ~~~-----------~~~~~~~~~~~~~~~~~~v~~~~--------a~~~~~Ea~~ia~~lr~~~~~-------------- 384 (1040)
... ........... ......+.+.. ......++..+|..|++....
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~I~~ll~~~~~~~~~~~~~~~~ 546 (1180)
T 1w36_B 468 FMFREIPFIPVKSAGKNQALRFVFK-GETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDA 546 (1180)
T ss_dssp TSSTTSCCCCCEECGGGTTEEEEET-TEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEE
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1123345310000255544332466-666654202204666643103777899999999999998200111232145434
Q ss_pred ---CCCEEEEEECCCCHHHHHHHHHHHHCCCC-CCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf ---29849998026411357888435513777-66569003528898999999999837999789999862965456679
Q gi|254780823|r 385 ---NKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 (1040)
Q Consensus 385 ---~~~~~avv~~d~~~~~~v~~~L~~~gipv-~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~ 460 (1040)
.+.+|+|++|.......+..+|.+.|||+ .++.+..+.+++.++.++++++++.+|.+..++.++|++|+++++..
T Consensus 547 r~~~~~DIaILvR~~~~~~~i~~~L~~~gIp~~~~~~~~~~~~~~ev~~ll~ll~~l~~p~~~~~l~~~l~s~~~g~~~~ 626 (1180)
T 1w36_B 547 RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNAL 626 (1180)
T ss_dssp EECCGGGEEEEESSHHHHHHHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 67781427999715376899998898749984994673136408899999999986148453899999983734599999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38999999973223210455777811178887522011444434552010155343257999999989999998750110
Q gi|254780823|r 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 (1040)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~ 540 (1040)
++..+......+. ......... .. ......+.+.+..... .
T Consensus 627 ~l~~l~~~~~~~~-------------~~~~~~~~~-------------~~------~~~~~~~~~~l~~l~~----~--- 667 (1180)
T 1w36_B 627 DIETLNNDEHAWD-------------VVVEEFDGY-------------RQ------IWRKRGVMPMLRALMS----A--- 667 (1180)
T ss_dssp HHHHHHHCHHHHH-------------HHHHHHHHH-------------HH------HHHHHCHHHHHHHHHH----H---
T ss_pred HHHHHHHCHHHHH-------------HHHHHHHHH-------------HH------HHHHCCHHHHHHHHHH----H---
T ss_conf 9999843457789-------------999989999-------------99------9986670899999998----7---
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-----
Q ss_conf 022102378899999999999723676321114566577799999999866421376644778899999986224-----
Q gi|254780823|r 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG----- 615 (1040)
Q Consensus 541 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 615 (1040)
... ...... .. .. .. .......+.......... .-....+..++......
T Consensus 668 -------~~~------~~~l~~-~~-~~---~~---~~~~l~~l~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 722 (1180)
T 1w36_B 668 -------RNI------AENLLA-TA-GG---ER---RLTDILHISELLQEAGTQ----LESEHALVRWLSQHILEPDSNA 722 (1180)
T ss_dssp -------TTH------HHHHHH-SS-SH---HH---HHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHHHSCCCCS
T ss_pred -------HHH------HHHHHH-CC-CH---HH---HHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCH
T ss_conf -------679------999986-05-76---89---999999999999999874----2327899999999986012112
Q ss_pred -CCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCC-------CHHHHHHHHHHH
Q ss_conf -433566778773798034333566586378528631134566666764896788564899-------966788899999
Q gi|254780823|r 616 -ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-------TAEKYIGQAAHD 687 (1040)
Q Consensus 616 -~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~-------~~e~~~~~~~~~ 687 (1040)
..........+.|+|||+|.++|++|++|||+|++++.+|.................+.. ..++.....+.+
T Consensus 723 ~~~~~~~~~~~~~V~imTiHkSKGLEfpvV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~Ee~RLl 802 (1180)
T 1w36_B 723 SSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLL 802 (1180)
T ss_dssp TTBCCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 45542122036706897415416766788999367567776666665310100014655465677687899888887876
Q ss_pred HHHHHCCCE-EEEEEECCCCC--CCCCCCHHH----HHHHHCCCCCCHHHCCCCCCCHHHHHHHHHC----------CC-
Q ss_conf 999855985-99992046777--665665378----8877314731000011365322347875210----------12-
Q gi|254780823|r 688 FEMANGTRH-LIYTRSLRENN--IPTIASRWL----QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY----------TT- 749 (1040)
Q Consensus 688 ~~~~~~a~~-v~lt~~~~~~~--~~~~ps~~l----~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~- 749 (1040)
|+.+++|++ ++++++..... .....+.+. ..+.....+.... .+......+.. ..
T Consensus 803 YVAlTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1180)
T 1w36_B 803 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAA-------GLRTCIEALCDDDIAWQTAQTGDN 875 (1180)
T ss_dssp HHHHTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHH-------HHHHHHHHSCSTTEEEEECCCCCC
T ss_pred HEEEECCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 3045223356899984013345776665255676678886267755414-------689988875377643224554323
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHH
Q ss_conf --------343454755676300124677800457764283688897632888----------88721248998899899
Q gi|254780823|r 750 --------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD----------FIPHFKKDPDRTDRGTL 811 (1040)
Q Consensus 750 --------~~~~~~~~~~~~~~~~~~~~lS~S~l~~~~~cP~~~~~~~~l~l~----------~~~~~~~~~~a~~~Gtl 811 (1040)
.....................|.|.+............. .+... +......-+.++.+||+
T Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ga~~Gt~ 954 (1180)
T 1w36_B 876 QPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP-RLDVDAAGVASVVEEPTLTPHQFPRGASPGTF 954 (1180)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCEEEESSCSSSCSSCTTHHHHCT-TSCTTCCCCCCSCCCSSCCGGGSCCSHHHHHH
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHH
T ss_conf 33345655411212212455655432203726664401345554454-54555334421002776780014763768999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----C--CCCCEEEEEEE
Q ss_conf 99999999861258983478999999999996532798669999999999999999999973----2--46885999996
Q gi|254780823|r 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK----I--QSSIEKIFVNI 885 (1040)
Q Consensus 812 vH~~Le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~--~~~~~~~~~E~ 885 (1040)
+|++||.+-- ..... ... +.+.+......... ...+...+..++..... + .........|.
T Consensus 955 ~H~ilE~ldf--~~~~~---~~~----i~~~l~~~~~~~~~----~~~~~~~l~~~l~~pL~~~~~~l~~~~~~~~~~E~ 1021 (1180)
T 1w36_B 955 LHSLFEDLDF--TQPVD---PNW----VREKLELGGFESQW----EPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEM 1021 (1180)
T ss_dssp HHHHTTSCCS--SSCCC---HHH----HHHHHHHTTCCGGG----HHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEEE
T ss_pred HHHHHHHCCC--CCCCC---HHH----HHHHHHHCCCCHHH----HHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCEEEC
T ss_conf 9999984899--99999---999----99999854997022----59999999999808587767665447720216501
Q ss_pred EEEEEECCC----------------------------CEEEEEEEEEEEECCCCCEEEEECCCCCC---CC---HHH---
Q ss_conf 568897882----------------------------37999999788887998589997268534---68---879---
Q gi|254780823|r 886 PAKMAIESI----------------------------GIHLTGFADRIDLLKSGFVDITDYKTGDN---PK---KET--- 928 (1040)
Q Consensus 886 ~~~~~i~~~----------------------------~~~l~GrIDRid~~~dG~~~IvDYKTG~~---p~---~~~--- 928 (1040)
+|.+++... ...|+|+||+|... ||+++||||||... ++ .+.
T Consensus 1022 ~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~G~IDlvf~~-dg~~~IvDYKTd~lg~~~~~y~~~~l~~ 1100 (1180)
T 1w36_B 1022 EFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRH-EGRYYLLDYKSNWLGEDSSAYTQQAMAA 1100 (1180)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSCCCEEEEEEEEEEEEBS-SSCBCCEEEECCCCCSSGGGSBHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEE-CCEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 532225622028889999973363001254323435414699999999999-9999999727899899841029999999
Q ss_pred --HHCCCCCCHHHHHHHHHHCC---CCCC-CCCCCCCEEEEEECCC
Q ss_conf --84230121699999998288---6777-8557421388860686
Q gi|254780823|r 929 --AQKLIDPQLSLEAAALKAGS---FSQI-DCRKVANLFYIRLKQK 968 (1040)
Q Consensus 929 --~~~~~~~QL~lY~~~~~~~~---~~~~-~~~~~~~~~y~~l~~~ 968 (1040)
...+|..|+.+|++++.+-- +.+. .....||..|+.+++=
T Consensus 1101 ~m~~~~Y~lQ~~lY~~AL~r~L~~r~~~y~~~~h~Gg~~YlFlRG~ 1146 (1180)
T 1w36_B 1101 AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV 1146 (1180)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCCCCEEEESSSC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCC
T ss_conf 9887861999999999999997070779874551782799994798
No 3
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=100.00 E-value=3.4e-31 Score=219.62 Aligned_cols=599 Identities=13% Similarity=0.082 Sum_probs=323.0
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHH
Q ss_conf 88884898389889379999999711210112367898133222067627968999999999851188865140331257
Q gi|254780823|r 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 (1040)
Q Consensus 3 ~~~~~v~~~~~~~~fl~~~a~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~ 82 (1040)
.+.|-.-.-.||..==.+++. .+...+.+ .+.+|+ ++++|+.|+.||..|++++...++.. .--+.|.|++
T Consensus 23 ~~g~~lV~AgAGSGKT~~L~~-ri~~Li~~----~~~~p~---~IL~lTFTnkAA~Em~~Ri~~~l~~~-~~~~~i~TfH 93 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLTH-RIAYLMAE----KHVAPW---NILAITFTNKAAREMRERVQSLLGGA-AEDVWISTFH 93 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHHH-HHHHHHHT----TCCCGG---GEEEEESSHHHHHHHHHHHHHHHGGG-GTTSEEEEHH
T ss_pred CCCCEEEEEECCHHHHHHHHH-HHHHHHHC----CCCCCC---CEEEEECHHHHHHHHHHHHHHHHCCC-CCCCEEEEHH
T ss_conf 998989998284489999999-99999980----998940---19999531999999999999861453-5796997399
Q ss_pred HHHHHHHHCCCCCCC-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 765655404543346-77888-8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r 83 DVVEEKFTADLLLSY-NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 (1040)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~ 160 (1040)
+|+...+........ ..... ++..++..++.+++..+. .+ .. ... ...+...+....
T Consensus 94 sf~~~ilr~~~~~~g~~~~f~i~d~~d~~~li~~~~~~~~---~~-~~----------~~~-------~~~~~~~i~~~~ 152 (724)
T 1pjr_A 94 SMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKN---ID-PK----------KFE-------PRTILGTISAAK 152 (724)
T ss_dssp HHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTS---CT-TT----------TCC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCC---CC-HH----------HCC-------HHHHHHHHHHHH
T ss_conf 9999999997998589999845789999999999999769---99-02----------268-------999999999866
Q ss_pred HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHCCCCCEEEEEEC
Q ss_conf 7599978987400220207999999999999999999753248889899999999874434-----42276880999834
Q gi|254780823|r 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGS 235 (1040)
Q Consensus 161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-----~~~~~~~~i~v~g~ 235 (1040)
.....++........ ..+ ..+..+|..|...+...+..|............... .-..++.+|+||+|
T Consensus 153 ~~~~~~~~~~~~~~~---~~~----~~~~~~y~~y~~~l~~~~~~d~~d~~~~~~~ll~~~~~~~~~~~~~~~~ilvDE~ 225 (724)
T 1pjr_A 153 NELLPPEQFAKRAST---YYE----KVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEY 225 (724)
T ss_dssp HTTCCHHHHTTC------CHH----HHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSG
T ss_pred HCCCCHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCEECCCCC
T ss_conf 403789999875101---699----9999999999999998499986899999999861699999998763234213233
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
||+++.|..++..+.+.. ..++..+|+++..+.|+++...........+.... ...+..
T Consensus 226 QDt~~~q~~il~~L~~~~--~~l~~vGD~dQsIY~frGA~~~~~~~f~~~~~~~~-------------------~~~L~~ 284 (724)
T 1pjr_A 226 QDTNRAQYTLVKKLAERF--QNICAVGDADQSIYRWRGADIQNILSFERDYPNAK-------------------VILLEQ 284 (724)
T ss_dssp GGCCHHHHHHHHHHHTTT--CCEEEEECGGGCCCGGGTCCTHHHHTHHHHSTTCE-------------------EEEECB
T ss_pred CCCHHHHHHHHHHHHCCC--CCEEEECCCHHCCCCCCCCCHHHHHHHHHHCCCCE-------------------EEECCC
T ss_conf 200588999999873345--64588537311024568988899999998556676-------------------997634
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEE
Q ss_conf 6645367777544420111221000000123567653213378159955998999999999999986422---9849998
Q gi|254780823|r 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALI 392 (1040)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv 392 (1040)
.......-............. ...............+.+..+.+..+|+..++..+.+..... .+++||+
T Consensus 285 NyRs~~~I~~~an~li~~~~~-------~~~k~~~~~~~~g~~i~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~diAIL 357 (724)
T 1pjr_A 285 NYRSTKRILQAANEVIEHNVN-------RKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVL 357 (724)
T ss_dssp CSSSCHHHHHHHHHHHTTCSS-------CCCCCCBCSSCCCCCEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 557650589999999975224-------5754223447889832788449889999987768999998079982001687
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02641135788843551377766569003528898999999999837999789999862965456679389999999732
Q gi|254780823|r 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 (1040)
Q Consensus 393 ~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~ 472 (1040)
+|.......+..+|.+.|||+.+.++.++.+++.+.+++++++++.+|.+..++.+++++|..+.+..............
T Consensus 358 ~R~n~~~~~le~~L~~~~Ip~~~~~~~~~~~~~eikdlla~lr~l~~~~d~~s~~ril~~p~~~~~~~~~~~~~~~~~~~ 437 (724)
T 1pjr_A 358 YRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADH 437 (724)
T ss_dssp ESSGGGHHHHHHHHHHTTCCEEEETSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCTTTSCCCC---------
T ss_pred EECHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 60567799999999987999999689761147999999999999809886699999984643356724678999999860
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 23210455777811178887522011444434552010155343257999999989999998750110022102378899
Q gi|254780823|r 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 (1040)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~ 552 (1040)
... ....+....... . ... .............. .. .........+
T Consensus 438 ~~~--------~~~~~~~~~~~~----~----~~~-----~~~~~~~~~~~~~~----~~----------~~~~~~~~~~ 482 (724)
T 1pjr_A 438 ELS--------LFEALGELEMIG----L----GAK-----AAGALAAFRSQLEQ----WT----------QLQEYVSVTE 482 (724)
T ss_dssp -----------CTTTTTSHHHHC----C----TTT-----TTTTTHHHHHHHHH----HH----------HHTTTSCHHH
T ss_pred CCH--------HHHHHHHHHHHH----H----HHH-----HHHHHHHHHHHHHH----HH----------HHHHCCCHHH
T ss_conf 211--------799987644310----0----034-----45567788898888----77----------7652034999
Q ss_pred HHHHHHHHHHHCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCC
Q ss_conf 99999999972367632----11145665777999999998664213766447788999999862--2443356677877
Q gi|254780823|r 553 WTKLTVTCLQNVCLDEH----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI--DGETVKPKIEKSS 626 (1040)
Q Consensus 553 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 626 (1040)
.+... +...+.... ........................... ......+...+.... ............+
T Consensus 483 ~~~~i---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~ 557 (724)
T 1pjr_A 483 LVEEV---LDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSD--DKSLIAFLTDLALISDLDELDGTEQAAEGD 557 (724)
T ss_dssp HHHHH---HHHTSHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHCS--CCCHHHHHHHTTTCC-------------CC
T ss_pred HHHHH---HHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999---9854708887520376689999989999999999875134--003999999998632033343013455578
Q ss_pred CEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC
Q ss_conf 379803433356658637852863113456666676489678856489996678889999999985598-5999920467
Q gi|254780823|r 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE 705 (1040)
Q Consensus 627 ~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~ 705 (1040)
.|++||+|.++|++|++||++|+++|.||...... ..+...+..+.+|+.+++|+ ++++|++...
T Consensus 558 ~V~l~TiH~sKGlEfd~V~l~g~~eg~fP~~~~~~--------------~~~~leEERRLfYVA~TRAk~~L~lt~~~~r 623 (724)
T 1pjr_A 558 AVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLE--------------DDDEMEEERRLAYVGITRAEEELVLTSAQMR 623 (724)
T ss_dssp CEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGT--------------CHHHHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEEEEEHHHCCCCCCCEEEECCCCCCCCCCCCCCC--------------CCHHHHHHHHHHHHHHHHHHCEEEEEEECCC
T ss_conf 07998330046766788998177567785300147--------------7154799999999888368547899972704
Q ss_pred ----CCCCCCCCHHHHHHH
Q ss_conf ----776656653788877
Q gi|254780823|r 706 ----NNIPTIASRWLQRLL 720 (1040)
Q Consensus 706 ----~~~~~~ps~~l~~l~ 720 (1040)
......||+|+.++.
T Consensus 624 ~~~g~~~~~~pSrFl~Ei~ 642 (724)
T 1pjr_A 624 TLFGNIQMDPPSRFLNEIP 642 (724)
T ss_dssp EETTEEECCCBCHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHH
T ss_conf 5688876589887488725
No 4
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Probab=100.00 E-value=2.2e-29 Score=207.71 Aligned_cols=598 Identities=11% Similarity=0.045 Sum_probs=316.8
Q ss_pred CCCCCEEEECCCCCHHHHHH-HHHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEH
Q ss_conf 88884898389889379999-99971121011236789813322206762796899999999985118886514033125
Q gi|254780823|r 3 NKKPNVFTIAPSSPFFREMI-PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 (1040)
Q Consensus 3 ~~~~~v~~~~~~~~fl~~~a-~~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~ 81 (1040)
.+.|.+-.-.||.. +|.. ...+...+ . -.+.+|+ ++++|+.|+.||..|++++.+..+. ..--+.|.|+
T Consensus 21 ~~~~~lV~AgAGSG--KT~tL~~ri~~Li-~---~~~~~p~---~Il~lTFT~~Aa~E~~~Ri~~~l~~-~~~~v~v~Tf 90 (680)
T 2is6_A 21 PRSNLLVLAGAGSG--KTRVLVHRIAWLM-S---VENCSPY---SIMAVTFTNKAAAEMRHRIGQLMGT-SQGGMWVGTF 90 (680)
T ss_dssp CSSCEEEECCTTSS--HHHHHHHHHHHHH-H---TSCCCGG---GEEEEESSHHHHHHHHHHHHHHHCS-CCTTCEEEEH
T ss_pred CCCCEEEEEECCHH--HHHHHHHHHHHHH-H---HCCCCHH---HEEEECCHHHHHHHHHHHHHHHCCC-CCCCEEEEEH
T ss_conf 99998999848648--9999999999999-8---0999950---3988802199999999999987077-7678099649
Q ss_pred HHHHHHHHHCCCCCCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 77656554045433467788-8-881899999999999998631000000122321113569788999899999999999
Q gi|254780823|r 82 GDVVEEKFTADLLLSYNLNP-P-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 (1040)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~ 159 (1040)
++|+...+........-.+. . ++..++...+.+++..+.. +.. .... ..........
T Consensus 91 Hsf~~~il~~~~~~~~~~~~~~i~d~~~~~~li~~~~~~~~~-------~~~-------~~~~-------~~~~~~~~~~ 149 (680)
T 2is6_A 91 HGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNL-------DEK-------QWPP-------RQAMWYINSQ 149 (680)
T ss_dssp HHHHHHHHHHTTTTTTCCTTCEEECHHHHHHHHHHHHHHTTC-------CTT-------TSCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCC-------CCC-------CCCH-------HHHHHHHHHH
T ss_conf 999999999979981999898764899999999999997188-------711-------0348-------9999998877
Q ss_pred HHCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHCCCCCEEEEEE
Q ss_conf 97599978987400220207999999999999999999753248889899999999874434-----4227688099983
Q gi|254780823|r 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAG 234 (1040)
Q Consensus 160 ~~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~~~-----~~~~~~~~i~v~g 234 (1040)
...+..+.++.... ...+.. +..++..|...+...+..+............... .-...+.+|+||+
T Consensus 150 ~~~~~~~~~~~~~~----~~~~~~----~~~~~~~y~~~~~~~~~~~f~~~~~~~~~l~~~~~~i~~~~~~~~~~i~vDE 221 (680)
T 2is6_A 150 KDEGLRPHHIQSYG----NPVEQT----WQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDE 221 (680)
T ss_dssp HHTTCCTTTCCCSS----CHHHHH----HHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESS
T ss_pred HHCCCCHHHHHHCC----CHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHH
T ss_conf 65259999998635----889999----9999999999998869978688999999998609999999997547002066
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 45661679999999861489689982486321078886433420123333344467636899999976299966602577
Q gi|254780823|r 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 (1040)
Q Consensus 235 ~~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 314 (1040)
+||+++.|..++..+.+. +..++..+|+++..+.|+++............. .. ....+.
T Consensus 222 ~QD~~~~q~~~l~~l~~~--~~~~~~vGD~~QsIy~frga~~~~~~~~~~~~~-----------------~~--~~~~L~ 280 (680)
T 2is6_A 222 FQDTNNIQYAWIRLLAGD--TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP-----------------GA--ETIRLE 280 (680)
T ss_dssp GGGCCHHHHHHHHHHHTT--TCEEEEEECGGGCCCGGGTCCTHHHHHHHHHST-----------------TC--EEEECC
T ss_pred HHHHHHHHHHHHHHHHCC--CCCEEEECCHHHHHHHHCCHHHHHHHHHHHHCC-----------------CC--EEEECC
T ss_conf 666799999999876357--874278548576444650035789999998778-----------------98--699789
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC--CCEEEEE
Q ss_conf 66645367777544420111221000000123567653213378159955998999999999999986422--9849998
Q gi|254780823|r 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALI 392 (1040)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~~--~~~~avv 392 (1040)
........-.............. ..............+.++.+.+...|+..|+..+....... ..+++|+
T Consensus 281 ~NyRs~~~I~~~an~l~~~~~~~-------~~~~l~~~~~~~~~i~~~~~~~~~~e~~~i~~~i~~~~~~g~~~~diaiL 353 (680)
T 2is6_A 281 QNYRSTSNILSAANALIENNNGR-------LGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAIL 353 (680)
T ss_dssp BCCSSCHHHHHHHHHHHHTSSSC-------CCCCCBCCSCCCSCEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 87798789999999999727333-------56533455678996279945986899999999999998759975673448
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02641135788843551377766569003528898999999999837999789999862965456679389999999732
Q gi|254780823|r 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 (1040)
Q Consensus 393 ~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~ 472 (1040)
++.......+...|...|||+.+.++..+.+++.+.+++++++++.++.+..++.+++++|+.+.+..............
T Consensus 354 ~r~~~~~~~l~~~L~~~~Ip~~~~~~~~~~~~~ev~~~l~~l~~l~~~~d~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 433 (680)
T 2is6_A 354 YRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDR 433 (680)
T ss_dssp ESSGGGHHHHHHHHHHTTCCEEECSSSCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 74067799999999976998899589761034999999999999809886699999983533488999999999988741
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 23210455777811178887522011444434552010155343257999999989999998750110022102378899
Q gi|254780823|r 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 (1040)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~ 552 (1040)
... +........... ............+.+....... .........
T Consensus 434 ~~~------------~~~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 479 (680)
T 2is6_A 434 QLT------------LWQACRELLQEK-----------ALAGRAASALQRFMELIDALAQ-----------ETADMPLHV 479 (680)
T ss_dssp TCC------------HHHHHHHHHTTT-----------CSCHHHHHHHHHHHHHHHHHHH-----------HTSSSCHHH
T ss_pred HHH------------HHHHHHHHHHHH-----------HCCHHHHHHHHHHHHHHHHHHH-----------HHHCCCHHH
T ss_conf 025------------788888764310-----------0134568999999998777888-----------741020578
Q ss_pred HHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf 99999999---9723676321114566577799999999866421376-6447788999999862244335667787737
Q gi|254780823|r 553 WTKLTVTC---LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 (1040)
Q Consensus 553 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 628 (1040)
........ ........ ... ..................... .......+...+................++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~V 554 (680)
T 2is6_A 480 QTDRVIKDSGLRTMYEQEK--GEK---GQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAV 554 (680)
T ss_dssp HHHHHHHHTSHHHHHHTTC--SHH---HHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHTGGGCSCCCSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCC--CHH---HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 9999987666799987324--756---67888999999999998763154210137999999987520234346779959
Q ss_pred EECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCC-
Q ss_conf 9803433356658637852863113456666676489678856489996678889999999985598-59999204677-
Q gi|254780823|r 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLREN- 706 (1040)
Q Consensus 629 ~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~~- 706 (1040)
.|||+|.++|++||+|||+|+++|.||.....+. .+...+..+.+|+.+++|+ +++++++....
T Consensus 555 ~l~TiH~sKGLEfd~Vil~~~~~g~fP~~~~~~~--------------~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~ 620 (680)
T 2is6_A 555 QLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDE--------------GGRLEEERRLAYVGVTRAMQKLTLTYAETRRL 620 (680)
T ss_dssp EEEEHHHHTTCCEEEEEECCCBTBTTTBHHHHSS--------------SSTHHHHHHHHHHHHTTEEEEEEEEEEEEEEE
T ss_pred EEEEHHCCCCCCCCEEEEECCCCCCCCCCCCCCC--------------CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCC
T ss_conf 9951420011258889996781899875245887--------------42169999899989836845789998660233
Q ss_pred ---CCCCCCCHHHHHHH
Q ss_conf ---76656653788877
Q gi|254780823|r 707 ---NIPTIASRWLQRLL 720 (1040)
Q Consensus 707 ---~~~~~ps~~l~~l~ 720 (1040)
.....||+|+.++.
T Consensus 621 ~g~~~~~~pS~Fl~Ei~ 637 (680)
T 2is6_A 621 YGKEVYHRPSRFIGELP 637 (680)
T ss_dssp TTEEECCCBCHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 66767789985298853
No 5
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-28 Score=199.06 Aligned_cols=603 Identities=12% Similarity=0.046 Sum_probs=307.1
Q ss_pred CCCCEEEECCCCCHHHHHHH-HHHHHHHHCCCCCCCCCHHHHCCEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEHH
Q ss_conf 88848983898893799999-99711210112367898133222067627968999999999851188865140331257
Q gi|254780823|r 4 KKPNVFTIAPSSPFFREMIP-ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 (1040)
Q Consensus 4 ~~~~v~~~~~~~~fl~~~a~-~l~~~~~~~~~~~~~~~p~~L~~v~vl~ptrraa~~Lr~~l~~~~~~~~~~~P~i~t~~ 82 (1040)
+.|-.-.-.||.. +|.+= ..+.. ++.. .+.+|+ ++++|+.||+||..|++++.+.++....-.+.|.||+
T Consensus 15 ~g~~lV~AgAGSG--KT~tL~~ri~~-Ll~~---~~~~p~---~Il~lTFT~~Aa~Em~~Ri~~~l~~~~~~~~~v~T~H 85 (673)
T 1uaa_A 15 TGPCLVLAGAGSG--KTRVITNKIAH-LIRG---CGYQAR---HIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFH 85 (673)
T ss_dssp SSEEEECCCTTSC--HHHHHHHHHHH-HHHH---HCCCGG---GEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHH
T ss_pred CCCEEEEEECCHH--HHHHHHHHHHH-HHHC---CCCCHH---HEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEECHH
T ss_conf 9898999818548--99999999999-9981---898961---5988655599999999999987284123788897199
Q ss_pred HHHHHHHHCCCCCC-CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 76565540454334-677888-8818999999999999986310000001223211135697889998999999999999
Q gi|254780823|r 83 DVVEEKFTADLLLS-YNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 (1040)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~-~~~~~r~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~L~~l~d~~~ 160 (1040)
+|+...+....... ...... ++..++...+.+++. .+... . ......+......+.
T Consensus 86 sf~~~il~~~~~~~g~~~~~~i~d~~~~~~li~~~~~----~~~~~--------------~----~~~~~~~~~~~~~~~ 143 (673)
T 1uaa_A 86 TLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE----GLIED--------------D----KVLLQQLISTISNWK 143 (673)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTS----TTSCS--------------C----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHH----HCCCC--------------H----HHHHHHHHHHHHHHH
T ss_conf 9999999998998389999855379999999999998----62553--------------0----442999999988765
Q ss_pred HCCCCHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-----HHHHCCCCCEEEEEEC
Q ss_conf 75999789874002202079999999999999999997532488898999999998744-----3442276880999834
Q gi|254780823|r 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGS 235 (1040)
Q Consensus 161 ~~~~~~~~L~~l~~~~~~~~w~~~~~fL~~~~~~~~~~l~~~g~~d~~~~~~~~~~~~~-----~~~~~~~~~~i~v~g~ 235 (1040)
............ ...... ..+..++..|...+...+..|............. .......+..|+||+|
T Consensus 144 ~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vDE~ 216 (673)
T 1uaa_A 144 NDLKTPSQAAAS---AIGERD----RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEY 216 (673)
T ss_dssp TTTCCTTHHHHT---CCSHHH----HHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCG
T ss_pred HHCCCHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCEEEECCCH
T ss_conf 411687876553---001589----9999999999999998177781578999999862085899999864247742513
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 56616799999998614896899824863210788864334201233333444676368999999762999666025776
Q gi|254780823|r 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 (1040)
Q Consensus 236 ~~~~~~~~~ll~al~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 315 (1040)
||+++.+..++..+.+. +..++..+|+++.++.|+++...........+.. .....+..
T Consensus 217 QD~~~~q~~l~~~l~~~--~~~l~~vGD~~QsIy~frga~~~~~~~~~~~~~~-------------------~~~~~L~~ 275 (673)
T 1uaa_A 217 QDTNTSQYELVKLLVGS--RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------------------LKVIKLEQ 275 (673)
T ss_dssp GGCBHHHHHHHHHHHTT--TCCEEEECCGGGCCCGGGTBCTTHHHHHHHHSTT-------------------CEEECCCC
T ss_pred HHCCHHHHHHHHCCCCC--CCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCC-------------------CEEEECCC
T ss_conf 43498888654301478--8536762350355455337741221002201798-------------------76986876
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 664536777754442011122100000012356765321337815995599899999999999998642---29849998
Q gi|254780823|r 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 (1040)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~---~~~~~avv 392 (1040)
.......-.......+..... ...............+......+...++..+...+...... ...+++|+
T Consensus 276 nyRs~~~I~~~~~~li~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~iavL 348 (673)
T 1uaa_A 276 NYRSSGRILKAANILIANNPH-------VFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAIL 348 (673)
T ss_dssp BSSSCHHHHHHHHHHHHTSCC-------SSCCCCCBSSCCCCCBEEEECSSHHHHHHHHHHHHHHHHHHHCCCTTTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 558887888999999860741-------1100013212468652200001048999888888765420256773214541
Q ss_pred ECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02641135788843551377766569003528898999999999837999789999862965456679389999999732
Q gi|254780823|r 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 (1040)
Q Consensus 393 ~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~ 472 (1040)
++.......+..+|...|||+.+.++..+.+++.+++++++++++.+|.+..++.++|++|...................
T Consensus 349 ~r~~~~~~~~~~~L~~~~Ip~~~~~~~~~~~~~ei~~ll~~l~~~~~~~~~~~~~rll~~~~~~~~~~~~~~l~~~~~~~ 428 (673)
T 1uaa_A 349 YRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTR 428 (673)
T ss_dssp ESSSGGGTTHHHHHHHTTCCEEESCCCCGGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTCCCCCHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 00214489999999977998899578650023999999999999809885699999982720013556899999999870
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 23210455777811178887522011444434552010155343257999999989999998750110022102378899
Q gi|254780823|r 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 (1040)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~ 552 (1040)
.... ....... .................... +............. .......
T Consensus 429 ~~~~-----------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~ 480 (673)
T 1uaa_A 429 NKSM-----------FTASFDM------------GLSQTLSGRGYEALTRFTHW----LAEIQRLAEREPIA-AVRDLIH 480 (673)
T ss_dssp TSCH-----------HHHTTCT------------THHHHSCSHHHHHHHHHHHH----HHHHHHHHTTCHHH-HHHHHHH
T ss_pred CCCH-----------HHHHHHH------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCHH-HHHHHHH
T ss_conf 7757-----------7898876------------55310004567788889999----99999975238478-9999999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEC
Q ss_conf 999999999723676321114566577799999999866421-3766447788999999862244335667787737980
Q gi|254780823|r 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 (1040)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~ 631 (1040)
.............. .............+.......... ..........+...+.... ...........++|+||
T Consensus 481 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~V~l~ 555 (673)
T 1uaa_A 481 GMDYESWLYETSPS----PKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRD-MMERGESEEELDQVQLM 555 (673)
T ss_dssp HHTHHHHHHHHSSS----HHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHTTC-CCCC---CCCCCSEEEE
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCEEEEE
T ss_conf 86356666664114----30699999999999999999984155453245999999998654-55426555669968997
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCCC----
Q ss_conf 3433356658637852863113456666676489678856489996678889999999985598-59999204677----
Q gi|254780823|r 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLREN---- 706 (1040)
Q Consensus 632 ~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~~---- 706 (1040)
|+|.++|++||+|||+|+++|.||.....+. ...+ ...+.+|+.+++|+ +++++++....
T Consensus 556 TiH~sKGLEfd~Viv~g~~~g~~P~~~~~d~------------~~~e---EErRL~YVA~TRAk~~L~l~~~~~~~~~g~ 620 (673)
T 1uaa_A 556 TLHASKGLEFPYVYMVGMEEGFLPHQSSIDE------------DNID---EERRLAYVGITRAQKELTFTLCKERRQYGE 620 (673)
T ss_dssp ESTTTSSCCEEEEEECCCBSSTTTTHHHHTT------------TCCH---HHHHHHHHHHHTEEEEEEEEECSSCCGGGS
T ss_pred EHHHHHHCCCCEEEEECCCCCCCCCCCCCCC------------CCHH---HHHHHHHHHHHHHHCEEEEEEECCCCCCCC
T ss_conf 6765332158989996680799977545895------------3288---999999989987850789999551554667
Q ss_pred CCCCCCCHHHHHHH
Q ss_conf 76656653788877
Q gi|254780823|r 707 NIPTIASRWLQRLL 720 (1040)
Q Consensus 707 ~~~~~ps~~l~~l~ 720 (1040)
.....||+|+.++.
T Consensus 621 ~~~~~pS~Fl~El~ 634 (673)
T 1uaa_A 621 LVRPEPSRFLLELP 634 (673)
T ss_dssp CCCCCBCHHHHHSC
T ss_pred CCCCCCCCCHHHCC
T ss_conf 66799984476538
No 6
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12}
Probab=99.64 E-value=1.6e-16 Score=123.31 Aligned_cols=172 Identities=16% Similarity=0.042 Sum_probs=94.3
Q ss_pred CCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHH---HHHHHH
Q ss_conf 6778004577642836888976328888872124899889989999999999861258983-478999999---999996
Q gi|254780823|r 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-PEINHLMKQ---IIDSHF 843 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP~~~~~~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~-~~~~~~l~~---~~~~~~ 843 (1040)
..+|+|++..|..||..|++.++.+..+.. ..+..+||++|.+++....-...... +........ ......
T Consensus 11 ~~lS~S~l~~~~~cP~~~~~~~~~~~~~~~-----t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (265)
T 3h4r_A 11 PGISKSQLDDIADTPALYLWRKNAPVDTTK-----TKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFL 85 (265)
T ss_dssp CCBCHHHHHHHHHCHHHHHHHTTSCCCCCC-----CSCCTHHHHHHHHHSSHHHHTCC----------------------
T ss_pred CCCCHHHHHHHHHCHHHHHHHHHCCCCCCC-----CHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 983988899998699999999727899999-----879986499999885755523432226502331567899999999
Q ss_pred HH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCC
Q ss_conf 53--2798669999999999999999999973246885999996568897882379999997888879985899972685
Q gi|254780823|r 844 EK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 (1040)
Q Consensus 844 ~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG 921 (1040)
.. ..........+...+..++..+........-.......|++..+..+..++.++||||++. .| ...||||||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~~~kgriD~~~--~d-~~~iiD~Kt~ 162 (265)
T 3h4r_A 86 MECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PE-FHWIMDVKTT 162 (265)
T ss_dssp ------------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GG-GTEEEEEEEE
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEEEE--CC-CCEEEEEEEC
T ss_conf 88663277644589999999999999848556765034553799898996577758888789985--68-8556764003
Q ss_pred CCCCH---HHHHCCCCCCHHHHHHHHHHC
Q ss_conf 34688---798423012169999999828
Q gi|254780823|r 922 DNPKK---ETAQKLIDPQLSLEAAALKAG 947 (1040)
Q Consensus 922 ~~p~~---~~~~~~~~~QL~lY~~~~~~~ 947 (1040)
+.|.. .-...+|+.|+++|+.+++..
T Consensus 163 ~~~~~~~~~~~~~~Y~~Q~a~Y~~~~~~~ 191 (265)
T 3h4r_A 163 ADIQRFKTAYYDYRYHVQDAFYSDGYEAQ 191 (265)
T ss_dssp SCHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 66777777665137899999999999996
No 7
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale}
Probab=99.49 E-value=5.1e-13 Score=100.39 Aligned_cols=216 Identities=12% Similarity=-0.029 Sum_probs=109.2
Q ss_pred CCCCCCHHHHHHCCHHHHHH------HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 67780045776428368889------763288888721248998899899999999998612589834789999999999
Q gi|254780823|r 768 RTYSFSEIKQLINDPYAVYA------RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 (1040)
Q Consensus 768 ~~lS~S~l~~~~~cP~~~~~------~~~l~l~~~~~~~~~~~a~~~GtlvH~~Le~~~~~~~~~~~~~~~~~l~~~~~~ 841 (1040)
.-+|+|.+.+|..||..+++ ...-...+. ...+..+||++|.++|..........+.
T Consensus 17 ~y~S~S~ik~~~~~~~~~~~~a~~~a~~~~~~~~~-----~t~al~~Gt~vH~~le~~~~~~~~~~~~------------ 79 (266)
T 3l0a_A 17 EYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDE-----KSTALLVGSYVDSYFEGSLDQFKKDNPE------------ 79 (266)
T ss_dssp HCEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCC-----CCHHHHHHHHHHHHHHTCHHHHHHHCGG------------
T ss_pred EEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHCCCC------------
T ss_conf 71269899998439311002688999860777889-----9879987189999865745534201842------------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCC
Q ss_conf 96532798669999999999999999999973246885999996568897882379999997888879985899972685
Q gi|254780823|r 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 (1040)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG 921 (1040)
.+.....-. .+...+..++..+......... .....|+.+...+. ++.++|+||+|. .++ .|||+||.
T Consensus 80 ~~~~~~~~~----~e~~~~~~m~~~~~~~~~~~~~--~~~~~E~~~~~~~~--gv~~kg~iD~i~--~~~--~ivDlKtt 147 (266)
T 3l0a_A 80 IFTQKGELK----ANFKQAEEIIARIERDEYFMKY--MSGQKQVIMTGELF--GAKWKIKMDSYI--PGV--AIVDLKVM 147 (266)
T ss_dssp GBCTTSSBC----HHHHHHHHHHHHHHTCHHHHHH--TTSEEEEEEEEEET--TEEEEEEEEEEE--TTT--EEEEEEEE
T ss_pred CCCCCCHHH----HHHHHHHHHHHHHHHCCHHHHH--CCCCCEEEEEEEEC--CEEEEEEEEEEE--CCC--CEEEEEEE
T ss_conf 013331448----9999999999999967003555--15772478999775--858740678995--689--72676774
Q ss_pred CCCCHH-----------HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 346887-----------984230121699999998288677785574213888606866554345654558988899999
Q gi|254780823|r 922 DNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 (1040)
Q Consensus 922 ~~p~~~-----------~~~~~~~~QL~lY~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 990 (1040)
..++.+ -...+|..|+++|+.++++.. +..+ ...++.+..................+......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~Y~~Q~a~Y~~~l~~~~-----g~~~-~~~~v~v~k~~p~~~~~~~~~~~~l~~~~~~v 221 (266)
T 3l0a_A 148 ASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNT-----GEKL-PFFIAGATKQTEPDIRIIHVTDNYLQEALHMV 221 (266)
T ss_dssp SCSSCCEEETTTEEECHHHHTTHHHHHHHHHHHHHHHH-----SCCC-CEEEEEEECSSSCCEEEEEECHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH-----CCCC-CEEEEEEECCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 11563224432103557775288999999999999986-----8986-37999997888876048977989999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999999848898855554510156689865442014
Q gi|254780823|r 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 (1040)
Q Consensus 991 ~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~y~~l~r~ 1030 (1040)
.+.+..+. +..++... | ..|.+||| ||.
T Consensus 222 ~~~i~~i~-~~~~~~~~------p--~~C~~CdY---Cr~ 249 (266)
T 3l0a_A 222 EMNMPRIL-RVKNGEVE------P--DRCELCDC---CRH 249 (266)
T ss_dssp HHHHHHHH-HHHTTSSC------C--CCCSCSHH---HHH
T ss_pred HHHHHHHH-HHHCCCCC------C--CCCCCCCC---CHH
T ss_conf 99999999-99728968------9--98998987---720
No 8
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=97.19 E-value=0.00045 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf 877379803433356658637852863113456666676489678856489996678889999999985598-5999920
Q gi|254780823|r 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRS 702 (1040)
Q Consensus 624 ~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~ 702 (1040)
..+.|.++|+|.++|++|++||++|+++...|.. + ..+.+|..+++|+ ++++++.
T Consensus 98 ~~~~I~v~Tih~~KGlEfd~Vil~~~~~~~~~~~--------------------~----~~~llYVa~TRAk~~L~i~~~ 153 (174)
T 3dmn_A 98 LAPGVIVVPSFLAKGLEFDAVIVWNANQENYQRE--------------------D----ERQLLYTICSRAMHELTLVAV 153 (174)
T ss_dssp CCSSEEEEEGGGCTTCCEEEEEEETCBTTTSCSG--------------------G----GHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCH--------------------H----HHHHHHHHHHHCCCEEEEEEC
T ss_conf 5684799860303676479999956610334685--------------------5----654652145010028999989
Q ss_pred CCCCCCCCCCCHHHHHHH
Q ss_conf 467776656653788877
Q gi|254780823|r 703 LRENNIPTIASRWLQRLL 720 (1040)
Q Consensus 703 ~~~~~~~~~ps~~l~~l~ 720 (1040)
. .+|+|+.++.
T Consensus 154 ~-------~~s~~l~~~~ 164 (174)
T 3dmn_A 154 G-------SLSPLLARVN 164 (174)
T ss_dssp S-------SBCGGGTTSC
T ss_pred C-------CCCHHHHHCC
T ss_conf 9-------9899898479
No 9
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=93.60 E-value=0.23 Score=23.90 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.5
Q ss_pred CCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 468859999965688978823799999978888799858999726853468879842301216999999982
Q gi|254780823|r 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 (1040)
Q Consensus 875 ~~~~~~~~~E~~~~~~i~~~~~~l~GrIDRid~~~dG~~~IvDYKTG~~p~~~~~~~~~~~QL~lY~~~~~~ 946 (1040)
..+++++..|.. ++ .|+||-+..+.+|.++||..|.++... + + --||.-|.-.+++
T Consensus 142 ~~G~~~v~rE~~----t~------~G~iDll~~D~~g~~VvIElKr~~~~~--~---~-V~QL~rYv~~lr~ 197 (251)
T 2vld_A 142 EEGFKPIYREKP----IR------HGIVDVMGVDKDGNIVVLELKRRKADL--H---A-VSQMKRYVDSLKE 197 (251)
T ss_dssp CTTCEEEEEEEE----ET------TEEEEEEEECTTSCEEEEEECSSCBCH--H---H-HHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEE----CC------CCCEEEEEEECCCCEEEEEEEECCCCH--H---H-HHHHHHHHHHHHH
T ss_conf 789789999884----28------896558999079999999997047986--0---7-9999999999874
No 10
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, PSI-2, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=17.66 E-value=25 Score=10.58 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCEEEEECCCC
Q ss_conf 997888879985899972685
Q gi|254780823|r 901 FADRIDLLKSGFVDITDYKTG 921 (1040)
Q Consensus 901 rIDRid~~~dG~~~IvDYKTG 921 (1040)
|+|-+-..+.|.++||--|+|
T Consensus 42 RaDv~al~~~Gei~IVEiKSS 62 (153)
T 3dnx_A 42 RVDVMGLGPKGEIWVIECKSS 62 (153)
T ss_dssp CEEEEEECTTCCEEEEEECSS
T ss_pred EEEEEEECCCCCEEEEEEECC
T ss_conf 788999889996999998477
Done!