HHSEARCH alignment of GI: 254780823 and SCOP domain: d1pjra2

Alignment
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=99.81  E-value=1.4e-18  Score=135.21  Aligned_cols=311  Identities=14%  Similarity=0.147  Sum_probs=168.9

Q ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHH
Q ss_conf             8159955998999999999999986422---9849998026411357888435513777665690035288989999999
Q gi|254780823|r  358 DVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL  434 (1040)
Q Consensus       358 ~v~~~~a~~~~~Ea~~ia~~lr~~~~~~---~~~~avv~~d~~~~~~v~~~L~~~gipv~~s~g~pL~~~p~v~~l~~ll  434 (1040)
                      .|.++.|.+..+||..|+..|.+.+..+   ..+|||++|....+..+...|.+.|||+....+..+..+|.+++++.++
T Consensus         2 pi~~~~~~~~~~Ea~~Ia~~I~~li~~g~~~~~DIAILvRt~~~~~~i~~~L~~~gIP~~~~~~~~~~~~~~i~~l~~~l   81 (333)
T d1pjra2           2 PILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYL   81 (333)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETSCCGGGSHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf             94799479999999999999999998699892888999878374999999999879998996886544167998999999


Q ss_pred             HHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCC
Q ss_conf             99837999789999862965456679389999999732232104557778111788875220114444345520101553
Q gi|254780823|r  435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE  514 (1040)
Q Consensus       435 ~~~~~~~~~~~l~~LL~sPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (1040)
                      +++.+|.+...+..++.+|......................        ....+........            ......
T Consensus        82 ~~l~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------~~~~~~  141 (333)
T d1pjra2          82 RVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELS--------LFEALGELEMIGL------------GAKAAG  141 (333)
T ss_dssp             HHHHCTTCHHHHHHHTTSSCCTTTSCCCC--------------------CTTTTTSHHHHCC------------TTTTTT
T ss_pred             HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHH------------HHHHHH
T ss_conf             99845541155665306863112211888988776531674--------8899987654332------------255555


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             432579999999899999987501100221023788999999999---99723676321114566577799999999866
Q gi|254780823|r  515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT---CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI  591 (1040)
Q Consensus       515 ~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  591 (1040)
                      ...    .....+.....           ..........+.....   ....+....  .....................
T Consensus       142 ~~~----~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~  204 (333)
T d1pjra2         142 ALA----AFRSQLEQWTQ-----------LQEYVSVTELVEEVLDKSGYREMLKAER--TIEAQSRLENLDEFLSVTKHF  204 (333)
T ss_dssp             TTH----HHHHHHHHHHH-----------HTTTSCHHHHHHHHHHHTSHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCCHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
T ss_conf             556----78999998888-----------7764445899999998607276765216--877899898777689999975


Q ss_pred             HHCCCCCCCCHHHHHHHHHHH--HCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             421376644778899999986--224433566778773798034333566586378528631134566666764896788
Q gi|254780823|r  592 IETGSCIKANAIEWIDIITRL--IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ  669 (1040)
Q Consensus       592 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~~~P~~~~~~~~l~~~~r  669 (1040)
                      ......  .....+.......  .............+.|.+||.|.++|++|++|+++|++++.+|......        
T Consensus       205 ~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~T~h~sKgle~~~v~~~g~~~~~~p~~~~~~--------  274 (333)
T d1pjra2         205 ENVSDD--KSLIAFLTDLALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLE--------  274 (333)
T ss_dssp             HHHCSC--CCHHHHHHHTTTCC-------------CCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBGGGGT--------
T ss_pred             HHCCCH--HHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEEECCCCCCHHCCCCEEECCCCCCCCCHHHCCC--------
T ss_conf             512733--5699999997753100000011334669968862301120222553021487668793233138--------


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC----CCCCCCCCHHHHHHHH
Q ss_conf             56489996678889999999985598-5999920467----7766566537888773
Q gi|254780823|r  670 SDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQRLLV  721 (1040)
Q Consensus       670 ~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~----~~~~~~ps~~l~~l~~  721 (1040)
                            ..+......+.+|+.+++|+ .++++++...    ......||+|+.++..
T Consensus       275 ------~~~~l~EErRLlYVA~TRAk~~L~is~~~~~~~~g~~~~~~pS~Fl~el~~  325 (333)
T d1pjra2         275 ------DDDEMEEERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPA  325 (333)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEETTEEECCCBCHHHHHSCG
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHCH
T ss_conf             ------825389999999989998977479988550233778646988963887489


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]