HHSEARCH alignment of GI: 254780823 and SCOP domain: d1w36c2

Alignment
>d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=4e-26  Score=184.77  Aligned_cols=360  Identities=14%  Similarity=0.115  Sum_probs=223.5

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHHHHHH-C---CCEEEEEECCCCHHHHHHHH-----HHHHCCCCCCCCCCHHHHCH
Q ss_conf             337815995599899999999999998642-2---98499980264113578884-----35513777665690035288
Q gi|254780823|r  355 CFSDVALIEADNEREEAISIAIALRMSLDE-N---KKKSALITADRNLARRVKLE-----LTRFGINIDISAGIPLSTTL  425 (1040)
Q Consensus       355 ~~~~v~~~~a~~~~~Ea~~ia~~lr~~~~~-~---~~~~avv~~d~~~~~~v~~~-----L~~~gipv~~s~g~pL~~~p  425 (1040)
                      ...+|+++.|+++.+|++.|++.|++.... +   +++|+|++|+...+.++..+     +...+||+.++++.++..+|
T Consensus        23 ~D~si~i~~c~~~~rEvE~l~~~I~~~l~~~~~~~~~DIaVl~r~~~~Y~~~I~~vF~~~~~~~~IPy~i~~~~~~~~~p  102 (470)
T d1w36c2          23 LDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHP  102 (470)
T ss_dssp             TCCSSEEEEESSHHHHHHHHHHHHHHHHHHSTTCCGGGEEEEESCHHHHHHHHHHHTSCCSSTTCCCCEECSEETGGGCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCH
T ss_conf             99988999799869999999999999997785979050788859768879999999815443578786985884122179


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCCC----------CCCCCCHHHHHH
Q ss_conf             989999999998379997899998629654--56679389999999732232104557----------778111788875
Q gi|254780823|r  426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKN----------SYDIMDLKSLVL  493 (1040)
Q Consensus       426 ~v~~l~~ll~~~~~~~~~~~l~~LL~sPl~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~  493 (1040)
                      .+.+++++|+++.++++..+++++|++|++  ..+..................+....          ......+.....
T Consensus       103 ~i~~ll~lL~l~~~~~~~~~l~~lL~~p~~~~~~~i~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~  182 (470)
T d1w36c2         103 VLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLT  182 (470)
T ss_dssp             HHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSCHHHHHHTTCCCCSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHCCHHHHHH
T ss_conf             99999999997608998189999868715310258987799999999998454324678878760231010124998876


Q ss_pred             HHCCCCCCCCCCCCHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             220114444345520101-5534325799999998999999875011002210237889999999999972367632111
Q gi|254780823|r  494 DRIATQKNNTHVPHWQSR-LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL  572 (1040)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  572 (1040)
                      ..............+... ...............+...+..+...   .........+..|...+.............. 
T Consensus       183 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-  258 (470)
T d1w36c2         183 RMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIW---RRGLAQERPLEEWLPVCRDMLNAFFLPDAET-  258 (470)
T ss_dssp             HHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHH---HHHTSSCEEHHHHTTHHHHHHHHHCCCCSHH-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             543321000134555333346554335799999999999999999---9987344779999999998888874100345-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf             45665777999999998664213766447788999999862244335667787737980343335665863785286311
Q gi|254780823|r  573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG  652 (1040)
Q Consensus       573 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~v~~~~~a~~~~~~~v~v~gl~e~  652 (1040)
                       ..........+....+..........++...+..++...+........... ++|+|||+|.++|++|++|||+|+|||
T Consensus       259 -~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~-d~V~v~tih~akglef~vVfl~Gl~eg  336 (470)
T d1w36c2         259 -EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLA-GPVNICTLMPMRSIPFKVVCLLGMNDG  336 (470)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTS-SSCEEECCCTTCCCCEEEEEEECCBTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCEEECCHHHCCCCCCEEEEEEECCC
T ss_conf             -678999999999999999975113313699999999854321002445756-783773315324888888999983376


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECCC--CCCCCCCCHHHHHHHHC
Q ss_conf             3456666676489678856489996678889999999985598-5999920467--77665665378887731
Q gi|254780823|r  653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRLLVL  722 (1040)
Q Consensus       653 ~~P~~~~~~~~l~~~~r~~l~l~~~e~~~~~~~~~~~~~~~a~-~v~lt~~~~~--~~~~~~ps~~l~~l~~~  722 (1040)
                      .||.....+++.....+...+.+.....  ..+++|..+++++ ++++||+..+  .+.+..||+|+.++...
T Consensus       337 ~fP~~~~~~~~~~~~~~~~~~~~~~~~e--er~lfy~altrA~~~L~lSy~~~~~~~g~~~~PS~~i~el~~~  407 (470)
T d1w36c2         337 VYPRQLAPLGFDLMSQKPKRGDRSRRDD--DRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDY  407 (470)
T ss_dssp             TSSCCCCCCSSCHHHHSCCTTCCCHHHH--HHHHHHHHHHHEEEEEEEEEECBCSSSCCBCCBCHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf             1205556100002788776066112478--9999999998444049999824656687974887899999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain
species: Escherichia coli [TaxId: 562]