BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] (1040 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] gi|254040500|gb|ACT57296.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 1040/1040 (100%), Positives = 1040/1040 (100%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL Sbjct: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR Sbjct: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW Sbjct: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP Sbjct: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL Sbjct: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA Sbjct: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP Sbjct: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK Sbjct: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN Sbjct: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA Sbjct: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK Sbjct: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL Sbjct: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN Sbjct: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID Sbjct: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG Sbjct: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL Sbjct: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI Sbjct: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Query: 1021 QSEYDHLARVAEWREEYDIS 1040 QSEYDHLARVAEWREEYDIS Sbjct: 1021 QSEYDHLARVAEWREEYDIS 1040 >gi|315122047|ref|YP_004062536.1| double-strand break repair protein AddB [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495449|gb|ADR52048.1| double-strand break repair protein AddB [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1050 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 755/1050 (71%), Positives = 881/1050 (83%), Gaps = 10/1050 (0%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M NKKPN+FTIAPSS FFREM+ +LLNGTLVE+F+YDP NPL LAS+TIYVPTKRAIQ L Sbjct: 1 MENKKPNIFTIAPSSSFFREMVLSLLNGTLVESFQYDPSNPLSLASITIYVPTKRAIQAL 60 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 RSEF G+KS ILP+IK LGD+V+E F D LS NLNPP+SN++RLLELARLIL WR Sbjct: 61 RSEFTAAIGEKSIILPVIKPLGDIVDENFNTDFPLSCNLNPPISNMKRLLELARLILAWR 120 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 N+ P+ IKD+YPESPL LP SPA+AIWLAKNLADIID+IE EEKKWEDL+ L+N+KYGMW Sbjct: 121 NQFPNKIKDIYPESPLILPASPADAIWLAKNLADIIDVIEIEEKKWEDLYTLENDKYGMW 180 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSI 239 WL A DFLKIAS+YW +RL EL+ SS V YQIALMRAEAE++ K GPII+AGSTGS+ Sbjct: 181 WLFALDFLKIASEYWKDRLSELSVSSAVHYQIALMRAEAEYIAKRKGTGPIIVAGSTGSM 240 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATARLMS VA+ PNGAIVLPG+D +P+ IW+TI+EKS NIT SN T+ +PQYSL+KL Sbjct: 241 PATARLMSAVASDPNGAIVLPGVDVFMPSNIWDTISEKSNNITQSNATHPMNPQYSLSKL 300 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L FL IKREDVK LG V++EM RS++ISKSF P + + +TD +E+KI ++QK FSDV Sbjct: 301 LHFLKIKREDVKCLGIVNDEMRMRSIIISKSFFPSGSFNTYDTDRMEDKILDLQKSFSDV 360 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS-ALITADRNLARRVKLELTRFGINIDISAG 418 ALIEA+NEREEA SIAIALRMSLDENKK ALITADRNLARRVKLEL RFGI++DISAG Sbjct: 361 ALIEANNEREEATSIAIALRMSLDENKKTKSALITADRNLARRVKLELIRFGIDVDISAG 420 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPLSTTL SILTSLLNA+FK ND MA+A L+KHPLA FGFPEK+L +AKNALEL+ALRG Sbjct: 421 IPLSTTLQGSILTSLLNAVFKTNDPMALAVLIKHPLATFGFPEKHLFKAKNALELIALRG 480 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 N+N DI+DLKSLV+++I QKN+ ++P WQSRLSEEDK+L++ L DHI++ I PL YK Sbjct: 481 NRNPCDIIDLKSLVINKINEQKNDKYIPRWQSRLSEEDKKLSLWLADHIVKSIAPLAVYK 540 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 N+NS +LS DWT+LT CLQNVCLDE++KLP+LW EEGK LS+LFSKIIE G CI Sbjct: 541 MNENSIGDSLSTPDWTELTAACLQNVCLDENKKLPSLWLAEEGKALSALFSKIIEAGPCI 600 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 KANAIEWIDIIT LI GETVKPKIEKSST+FILGTLESRLLNFDTLILGGLNEG+WPK T Sbjct: 601 KANAIEWIDIITALIAGETVKPKIEKSSTIFILGTLESRLLNFDTLILGGLNEGIWPKYT 660 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 KNPFLSR+MQSDL L+TAEKYIGQAAHDFEMA+GTRHLIYTRSL+ENNIPT+ASRWLQR Sbjct: 661 PKNPFLSRMMQSDLGLETAEKYIGQAAHDFEMASGTRHLIYTRSLQENNIPTVASRWLQR 720 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-KRPKPFPPLEAQPRTYSFSEIKQ 777 LLV GG F ++LKK+G+ YLDW R+LD +TK+ KRP+PFPPLE QP+TYSFSEIK+ Sbjct: 721 LLVFGGNAFSNDLKKKGERYLDWARRLDDSTKKQIICKRPRPFPPLETQPKTYSFSEIKK 780 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L++DPYA+YA++IL+LDF+P FK DP+ DRG LFH I+T LI+++INKNTPEI MK Sbjct: 781 LMSDPYAIYAQKILRLDFMPRFKNDPNPKDRGILFHKIVTGLIEEKINKNTPEITRRMKD 840 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 IIDS FEKENLPPHIDIIWR+LFHKI+ FLE+EE+ Q IEK VN+PAKM I+SIGIH Sbjct: 841 IIDSCFEKENLPPHIDIIWRYLFHKIALPFLEYEEQRQPLIEKTIVNVPAKMKIDSIGIH 900 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 LTG ADRID+LKSG+ DI DYKTG+NP K+ AQ LIDPQLSLEA ALKAGSFSQIDCR+V Sbjct: 901 LTGIADRIDILKSGYADIIDYKTGNNPTKKIAQNLIDPQLSLEAVALKAGSFSQIDCREV 960 Query: 958 ANLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 L YIRLK K IDCI ++K SADELSE+SLKN IEI+ LQ+G++PFIS Sbjct: 961 GKLVYIRLKLDHKRLKPRLIIDCIAGNEKDLSADELSEESLKNFIEIIKSLQSGKKPFIS 1020 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040 HLR SE +NI SEYDHLARV EW+E YD S Sbjct: 1021 HLRFSENANIPSEYDHLARVEEWKENYDAS 1050 >gi|240849706|ref|YP_002971094.1| double-strand break repair protein AddB [Bartonella grahamii as4aup] gi|240266829|gb|ACS50417.1| double-strand break repair protein AddB [Bartonella grahamii as4aup] Length = 1039 Score = 707 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 365/1044 (34%), Positives = 568/1044 (54%), Gaps = 25/1044 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP VF+I+P + F + ALL+G+L++NF LA IYVPT+RA + LR F Sbjct: 4 KPRVFSISPGTAFLPHFVDALLSGSLIDNFASSGDIQTALADSLIYVPTRRAARALRLAF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 +E + +ST LP I++LGDV E+ F + L+PP+ +RLL LARLI WR LP Sbjct: 64 VERSDTQSTFLPTIRALGDVDEDSFLFVENHTSTLDPPIGESERLLLLARLIRPWRENLP 123 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 ++ ++ + +P A+AIWLA++LA ++D IETE W L + + WW + Sbjct: 124 AHLRAMFGTEDVLIPAHSADAIWLAQDLAHLMDEIETEGADWSKLKNIAPDMVAEWWQIT 183 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATA 243 DFL I ++ W + L E S+P ++ + AE L + P+I AG +GS+PA + Sbjct: 184 LDFLTIVTQNWPKILTERQRSNPAEWRNQALTMHAETLRRMPPDKPVIAAGVSGSMPAVS 243 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK 298 L+ +A+ P GA+VLPGLD H+ WN ++ T+ + +HPQY L K Sbjct: 244 HLLKVIASLPKGAVVLPGLDLHMDEEQWNALSTSHKEKTACDFFDPAENVFSHPQYHLKK 303 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL ++ +R V +G S R ++S++ P T+D + I+ + N+ +D Sbjct: 304 LLTLMECQRHHVCEIGQQSITKKRRMAILSEALRPASTTD-KWIQIVRDDYENL---CAD 359 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + IEA NEREEA++IA+ LR +++E +K +ALIT DRNLARRV +EL RFGI + S+G Sbjct: 360 WSFIEAINEREEALAIAVTLRKAIEEPQKTAALITNDRNLARRVAVELQRFGIEANDSSG 419 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPL+ TL ++L +L + + +D +A +L+KHPL L EL LRG Sbjct: 420 IPLAQTLPVTLLRLILENVLQPDDPIAFLSLLKHPLTTLQQNRHRLREMAENFELFILRG 479 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 N ++ + + I T H + L ++ E A L + + + PL + Sbjct: 480 NTGRINLCECDQFLEKWIETH---FHNSSEINALDQQKCEEARFLCHLLRKAVEPLTSLM 536 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + +I++ TV +N +E L +L+ E G+ LS +++ S + Sbjct: 537 KKEKE----CTITEAAIATVEVFENFGRNEDNSLAHLYQHEAGQALSKFLRELVSDQSGL 592 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + EW + + +I +V P LFI GTLESRL DT+++GGLNEG WP +T Sbjct: 593 TFHLCEWPAMFSAIIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPIST 652 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + FLSR M+ L L+ E+ IG +AHDF+ A G ++ +R+LR N+ P+I SRWLQR Sbjct: 653 RNDAFLSRPMKMMLTLEPPEQRIGLSAHDFQWAMGMDKVVMSRALRVNHTPSIPSRWLQR 712 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + G + +++RG+ W + LD+T+ +RP P PPL+ +PR +S +EI+ L Sbjct: 713 METAVGKQVWKKIRERGEILRHWAKMLDHTSITSEVERPCPAPPLDIRPRHFSVTEIETL 772 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DPYA+YA++IL+L + DP ++RGTL+H I+ + N N +++ I Sbjct: 773 RYDPYAIYAKKILRLKPLKELIHDPSASERGTLYHAILAAFCTQIKNPNAANALNVLLSI 832 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 F+K N PP I++IW + F ++ ++ E+ + V + K+ I + G+ L Sbjct: 833 GRKEFDKFNFPPDIEVIWWNSFENLAPRLIQWEQSLGLRERYSEV-VSQKIPIGTTGVTL 891 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G ADR+D+L V+I D+KTG P + ++L+ PQL+LE A L G F + Sbjct: 892 SGRADRLDVLPDKTVEILDFKTGTPPSSKQVRELLFPQLALETALLIQGGFPDFQDFTPS 951 Query: 959 NLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 NLFYI L +K +I + K SA L E + +NLI ++T QN +Q ++SH Sbjct: 952 NLFYIPLNKKGEIKSQSILLKKKDGKTHLSAVNLGENAWENLIALITYYQNPQQGYLSHA 1011 Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036 K + +YDHLAR+ EW Sbjct: 1012 VPMSK-RYEGDYDHLARLWEWSSG 1034 >gi|163867330|ref|YP_001608524.1| hypothetical protein Btr_0025 [Bartonella tribocorum CIP 105476] gi|161016971|emb|CAK00529.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 1041 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 372/1044 (35%), Positives = 569/1044 (54%), Gaps = 23/1044 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP VF+I+P + F + ALL+GTL+++F + LA IYVPT+RA + LR F Sbjct: 4 KPRVFSISPGTAFLPHFVDALLSGTLIDDFAPNGDIQTALADSLIYVPTRRAARALRLAF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 +E + +ST LP I++LGDV E+ F + LNPP+ +RLL LARLI WR LP Sbjct: 64 VERSETQSTFLPTIRALGDVDEDSFLFVENHTSVLNPPIGESERLLLLARLIRPWRESLP 123 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 ++ L+ + +P A+AIWLA++LA ++D IETE W L + + WW + Sbjct: 124 AHLRALFGTEDVLIPAHSADAIWLAQDLAHLMDEIETEAADWSKLKDIAPDMVAEWWQIT 183 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPATA 243 DFL I ++ W + L E S+P ++ + AE L + PII AG +GSIPA + Sbjct: 184 LDFLTIVTQNWPQILTERQRSNPAEWRNQALTMHAETLRRTQPDKPIIAAGVSGSIPAVS 243 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK 298 L+ +A+ P GA+VLPGLD H+ WN ++ + T + +HPQY L K Sbjct: 244 HLLKVIASLPKGAVVLPGLDLHMDEDQWNALSTSNKEKTVCDFFDHAENVFSHPQYHLKK 303 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL +D +R+ V +G S+ R ++S++ P T+D + + + + +D Sbjct: 304 LLTLMDCQRDHVCEIGQQSSIKKRRMALLSEALRPASTTDKWIQIVRD----DYESLCAD 359 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + IEA NEREEA++IA+ALR +++E +K +ALIT DRNLARRV EL RFGI + S G Sbjct: 360 WSFIEAINEREEALAIAVALRKAIEEPQKTTALITNDRNLARRVAAELQRFGIEANDSGG 419 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPL+ TL ++L +L +F+ +D +A +L+KHPL L EL LRG Sbjct: 420 IPLAQTLPVTLLRLILENVFQSDDPIAFLSLLKHPLTTLQQNRHRLREMAENFELFVLRG 479 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 N ++ + + I T ++ H + L ++ E A LL + + + PL + Sbjct: 480 NTGRINLCECDQFLEKWIETYSHD-HNFSEINALDQQKFEEARLLCHLLKKAVEPLASLM 538 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + +I++ TV +N E L +L+ E G+ LS+ +++ S + Sbjct: 539 KQEKE----CTINEAAIATVEVFENFGRSEDNSLAHLYQHEAGQALSNFLRELVSDQSGL 594 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + EW + + LI +V P LFI GTLESRL DT+++GGLNEG WP +T Sbjct: 595 TFHLCEWPAVFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPIST 654 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + FLSR M+ L L+ E+ IG +AHDF+ A G ++ +R+LR N+ P+I SRWLQR Sbjct: 655 RNDAFLSRPMKMMLTLEPPEQRIGLSAHDFQWAMGMDKVVMSRALRVNHTPSIPSRWLQR 714 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + + G + ++ RG+ WT+ LD+T +RP P PPL+ +PR +S +EI+ L Sbjct: 715 IETVVGKQAWKQIRARGEILRHWTKMLDHTNMISDVERPCPVPPLDGRPRHFSVTEIETL 774 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DPYA+YA++IL+L + DP +RG L+H I+ + N N ++ + Sbjct: 775 RYDPYAIYAKKILRLRPLKPLIHDPSAIERGILYHAILAAFCAQIKNPNAANALDVLLTL 834 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 F+K N PP I++IW + F ++ ++ E+ + V + K++I + G+ L Sbjct: 835 GRKEFDKFNFPPDIEVIWWNSFENLAPHLIQWEQSLGPRERYAEV-VSEKISIGTTGVTL 893 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G DR+D+L V+I D+KTG P + +KL+ PQL+LE A L G+F + Sbjct: 894 SGRVDRLDVLPDKTVEILDFKTGTPPSSKQVRKLLFPQLALETALLMEGAFPDFQDLTPS 953 Query: 959 NLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 NLFYI L K +I + SA L E + KNLI ++T QN +Q ++SH Sbjct: 954 NLFYIPLNGKGEIKSQSILLKKKEENTYLSAVNLGEIAWKNLIALITYYQNPQQGYLSHA 1013 Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036 EK + +YDHLAR+ EW Sbjct: 1014 VPMEK-RYEGDYDHLARLWEWSSG 1036 >gi|49474857|ref|YP_032898.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1] gi|49237662|emb|CAF26844.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1] Length = 1040 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 370/1043 (35%), Positives = 566/1043 (54%), Gaps = 24/1043 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP VF+I+ + F + ALL+ L+++F + LA IYVPT+RA + LR+ F Sbjct: 4 KPRVFSISSGTAFLPHFVDALLSSALIDDFAPNGDIQTALADTLIYVPTRRAARALRTAF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 +E + KST LP I++LGDV E+ F + LNPP+ +RLL LARLI WR LP Sbjct: 64 VEKSDTKSTFLPTIRALGDVDEDSFLFGENHNNILNPPIEESERLLLLARLIRPWRENLP 123 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 D ++ ++ + +P A+AIWLA++LA ++D +ETE W L + + WW + Sbjct: 124 DHLRTMFGTEDVLIPAHTADAIWLAQDLAHLMDEMETEATDWSKLKEIAPDMVAEWWQIT 183 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATA 243 DFL I ++ W + L E S+P ++ +++ AE PI+ AG +GSIPA + Sbjct: 184 LDFLTIVTQSWPQILKERGRSNPAEWRNQVLKMHAETLWRTQPNKPILAAGVSGSIPAVS 243 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-----NITSSNTTYSTHPQYSLAK 298 L+ +A+ P GA+VLPGLD H+ W + + N+ +HPQY K Sbjct: 244 HLLKVIASLPKGAVVLPGLDLHMDEEQWEALGTINEKKTICNVFDRTANAFSHPQYHFKK 303 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL + +R V+ +G S R+ ++S++ P T++ + + + + + Sbjct: 304 LLSLIGCQRIHVREIGQQSAIKKKRTALLSEALRPASTTERWVQIVRD----DYENLCEN 359 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + IEA NEREEA++IA+ALR +++E +K +ALIT DRNLARRV EL RFGI + S G Sbjct: 360 WSFIEAINEREEALAIAVALRNAIEEPQKTAALITNDRNLARRVAAELQRFGIEANDSGG 419 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPL+ TL +++L LL +F+ D +A +L+KHPL G L EL LRG Sbjct: 420 IPLAQTLPATLLRLLLENVFQSGDPIAFLSLLKHPLTTLGQNRHRLREMAENFELFVLRG 479 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 N + ++ + +H + + +++ E A LL +++ + PL + Sbjct: 480 NTSCINLCECDKFFETWTE---IYSHKISETNVIDQQNCEEARLLCHLLVKAVEPLASLM 536 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 K N ++ ++ +N DE+ L +L+ E G+TL + +++ S + Sbjct: 537 KQKKECTVNEAMVATVEVF----ENFGRDENNSLAHLYQHEAGQTLLTFLRELVSDQSGL 592 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 K EW+ I + LI +V P LFI GTLESRL DT+++GGLNEG WP T Sbjct: 593 KFQLCEWLAIFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPITT 652 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + FLSR M+ L L+ EK IG +AHDF+ A G ++ +R+LR N+ P++ SRWLQR Sbjct: 653 RNDAFLSRPMKIMLTLEPPEKRIGLSAHDFQWAMGMNKVVMSRALRVNHAPSLPSRWLQR 712 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + G + ++ RG+ +L WT+ LD+T KRP P PPL+A+PR +S +EI L Sbjct: 713 LETVIGKQVWKQIRARGEIFLHWTKMLDHTNIIAGAKRPYPVPPLDARPRHFSVTEIATL 772 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DPYA+YA++IL+L + P ++RG L+H I + K N N+ + ++ I Sbjct: 773 RYDPYAIYAKKILRLKPLKALIHAPGASERGILYHAIFSAFCTKVKNPNSANVLDVLLNI 832 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 F K NLP I+ IW + F ++ FL+ E+ + V + K+ I + G+ L Sbjct: 833 GREEFNKFNLPLDIEAIWWNNFENLAPFFLQWEQSLGPRKRYAEV-VSQKIPIGTTGLTL 891 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G ADRID+L V+I D+KT P + + L+ PQL+LEAA L G+F+ Sbjct: 892 SGRADRIDVLPGKMVEIIDFKTSTPPSSKQVRDLLFPQLALEAALLMQGAFTDFQDLTPV 951 Query: 959 NLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 NL YI L K KI + K SA +L EK+ K+LI ++ QN +Q ++SH Sbjct: 952 NLSYIPLNGKGKIIPQSIFLKKDTKDHQSAMDLGEKAWKHLIALMDYYQNPQQGYLSHAV 1011 Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036 K + +YDHLAR+ EW Sbjct: 1012 PITK-RYEGDYDHLARLWEWSSG 1033 >gi|319407900|emb|CBI81554.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 1050 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 370/1047 (35%), Positives = 558/1047 (53%), Gaps = 27/1047 (2%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 +KP VF+I+P + F + ALL+GTL+++F + L IYVPT+RA + LR+ Sbjct: 9 TRKPRVFSISPGTSFLPHFVDALLSGTLIDDFAPNGDIQAALVDTLIYVPTRRAARALRA 68 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWR 120 F E + +S+ LP I+ LGD+ EE LNPP+ +RLL LARLI WR Sbjct: 69 AFAERSHTRSSFLPTIRPLGDMDEESSFFVENHDSILTLNPPIKESERLLLLARLIRPWR 128 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ ++ + +P + A+AIWLA++LA ++D +ETE W L + + W Sbjct: 129 ENLPAHLRAIFGTEDVLIPANTADAIWLAQDLASLMDEVETESADWSKLKDICPDMVAEW 188 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239 W + DFL I ++ W + L E S+PV ++ ++ +A+ L + PII+AG+TGSI Sbjct: 189 WQITLDFLTIITQNWPQILKEKQRSNPVEWRNQALKIQADILHRTQPHKPIIVAGATGSI 248 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN-----TTYSTHPQY 294 PA A L VA P GA+VLPGLD ++ A W+ + + + T+ + +HPQY Sbjct: 249 PAVAHLSKVVAYLPKGAVVLPGLDLYMDEAQWDALGTMNKDTTTLDCFDHALGAFSHPQY 308 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 L K L + +R V +G S R+ ++S++ P T+D + + + + Sbjct: 309 HLKKFLSLMKCQRIHVSEIGQRSIMQTKRAAIVSEALRPVSTTDQWAQIVRD----DYEN 364 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 +D +LIEA NEREEA++I+IALR +++E +K +ALIT DRNLARRV EL RFGI + Sbjct: 365 VCADWSLIEASNEREEALAISIALRNAIEEPQKIAALITNDRNLARRVVAELQRFGIEAN 424 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 S GIPL+ T +++L LL +FK D +A +L+KHPL G + L EL Sbjct: 425 DSGGIPLAHTSPATLLRLLLENVFKPGDPIAFLSLLKHPLTILGQNRQRLREIVENFELF 484 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 LRGN N ++ + + + T N + E A L +++ + PL Sbjct: 485 VLRGNPNHINLCECDQFLETWVQTYSYNMSDNCPL---DLQKTEEARSLCHLLVKAVEPL 541 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + +I++ + TV +N D++ +L+ E GK LS +++ Sbjct: 542 ASLIKQDKE----CTINEVARATVEAFENFGRDDNNSFVHLYQNEAGKALSIFLHELVND 597 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 S +K + EW + + LI V P LFI GTLESRL DT++LG LNEG W Sbjct: 598 QSGLKFHLYEWPAMFSALIATRCVSPSPGGHPRLFIWGTLESRLQTVDTVVLGSLNEGFW 657 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P T + FLSR M+ L L+ EK IG AAHDF+ A G ++ +R+ R N+IP++ SR Sbjct: 658 PSTTRNDAFLSRPMKMTLTLEPPEKRIGLAAHDFQWAMGMNKVVMSRATRVNHIPSVPSR 717 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 WLQRL + G + + RG+ +L W + LD T RP P PPL+ +PR +S +E Sbjct: 718 WLQRLETVVGKQVWKKICSRGETFLHWAKMLDKTDTIGFTPRPCPVPPLDMRPRHFSVTE 777 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 I+ L +PYA+YA++IL+L + P DRG L+H I+ + + N Sbjct: 778 IETLRYNPYAIYAKKILRLKPLKALIYSPYAADRGILYHAILAAFCTQIKDPNVAHALAT 837 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 I F+K NLPP I IW +F + F++ E+ + + V K I + Sbjct: 838 FLAIGRKEFDKLNLPPDIKAIWWSIFENFAPFFIKWEQNLGPRKRHVEV-AAQKTPIGTT 896 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 G+ L+G ADRID+L V+I D+KT P + + L+ PQL+LEAA L G+F+ Sbjct: 897 GVTLSGRADRIDILPDKMVEILDFKTNTPPSSKQVRALLHPQLALEAALLMQGAFTDFQD 956 Query: 955 RKVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 +NLFY+ LK K I K + SA L +++ K LI ++ QN +Q + Sbjct: 957 LTPSNLFYVPLKGKGPIKSQSIILYQKKAKDQTSAVLLGQEAWKRLITLIEYYQNPQQGY 1016 Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWRE 1035 +SH S + +YDHLAR++EW Sbjct: 1017 LSHALPSPH-RYEGDYDHLARLSEWSS 1042 >gi|121602115|ref|YP_989603.1| double-strand break repair protein AddB [Bartonella bacilliformis KC583] gi|120614292|gb|ABM44893.1| double-strand break repair protein AddB [Bartonella bacilliformis KC583] Length = 1047 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 367/1045 (35%), Positives = 562/1045 (53%), Gaps = 25/1045 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P +F+I+P +PF + ALL+G ++ +F + LA IYVPT+RA + LR+ F Sbjct: 4 QPRIFSISPGTPFLPHFVDALLSGEIIRDFAPNGNIQAALADTLIYVPTRRAARALRATF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +E + +S+ LP I LG++ E+ F D + ++PP+ +RLL LARLI WR K Sbjct: 64 VEKSPTQSSFLPKILPLGNMDEDSFLFTDDYTNALTIHPPIKESERLLLLARLIRPWREK 123 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP ++ ++ + +P + A+AIWLA++LA ++D +ETE W L ++ + WW Sbjct: 124 LPMHLRAIFGTEDVLIPTNTADAIWLAQDLARLMDEVETESADWSKLKEIEPDMVAEWWQ 183 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241 + DFL I ++ W L E ++PV ++ +++ +A+ L PII AG+TGSIP+ Sbjct: 184 ITLDFLTIVTQNWPHILKERQLNNPVEWRNQILKMQADILYRTQPNKPIIAAGATGSIPS 243 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-----TYSTHPQYSL 296 A L+ +A+ P GA++LP LD + WN + + T+ + +HPQY L Sbjct: 244 IANLLKVIASLPKGAVILPNLDLQMDEEQWNALGLINEETTTFDFLNHASAAFSHPQYHL 303 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 KLL + +R VK +G S+ R+ ++S++ P T+D + + + Sbjct: 304 KKLLFLMQCQRAHVKEIGQQSSMKKKRAALLSEALRPASTTDQWVQITRD----DYENLC 359 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 +D++LIEA NE EEA++IAIALR ++++ KK +ALIT DRNLARRV EL RFGI + S Sbjct: 360 ADLSLIEATNEHEEALAIAIALRHAIEDPKKTAALITNDRNLARRVSAELQRFGIEANDS 419 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 GIPL+ TL +++L LL +FK D +A +L+KHPL L EL L Sbjct: 420 GGIPLAQTLPATLLRLLLENLFKPGDPIAFLSLLKHPLTTLEQNRHRLREIVENFELFVL 479 Query: 477 RGNKNSYDIMDLKSLVLDRI--ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 RG ++ I T + L + E A LL +++ + PL Sbjct: 480 RGGTGRINLCTCDQFFETWIKTRTLNSLNANNLNDCSLDPQKSEEARLLCHLLVKAVKPL 539 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 V+ +I++ TV L+N D++ L +L+ +E G+ LS+ +++ Sbjct: 540 VSLIQQDRE----CTINETIIATVEVLENFGRDDNHSLAHLYQDEAGEALSTFLRELVND 595 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 S +K + EW I + LI +V P S LFI GTLESRL DT+++GGLNEG W Sbjct: 596 QSGLKFHLYEWPAIFSALIATRSVSPAPGGHSRLFIWGTLESRLQTVDTVVIGGLNEGSW 655 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P T + FLSR M+ L L+ EK IG +AHDF+ A G +I +R+ R N++P++ SR Sbjct: 656 PVTTRNDAFLSRPMKMMLTLEPPEKRIGLSAHDFQWAMGMDKVIMSRATRVNHVPSVPSR 715 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 WLQRL + G + + RG L W + LD T +RP P PPLE +PR +S +E Sbjct: 716 WLQRLETVIGQQVWKQICARGNTLLYWAKILDTTNMISFVERPCPIPPLEMRPRHFSITE 775 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 I+ L DPYA+YA++IL+L + DP T+RGTL+H I++ + N + + Sbjct: 776 IETLRQDPYAIYAKKILRLKPLKPLIHDPCNTERGTLYHAILSAFCTRIKNPHATDALDT 835 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 + I F+K NLP I+ IW +F ++ ++ E+ + V K I + Sbjct: 836 LLTIGREEFDKLNLPSDIEAIWWPMFENLAPLLIQWEQSLGPRKRHAEVEAQ-KTPIGTT 894 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 G+ L+G ADRID+L +I D+K P L+ PQL+LEAA L G+F Sbjct: 895 GVTLSGRADRIDILPGKMAEILDFKISTPPSSTQVLTLLSPQLALEAALLMQGAFVDFQD 954 Query: 955 RKVANLFYIRLKQKFKIDCI-----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 NL YI LK K KI + SA +L +++ K LI ++ QN +Q ++ Sbjct: 955 LTPLNLLYIPLKGKNKIKPQSIILNKKVINQKSAADLGKEAWKRLISLMNYYQNPQQGYL 1014 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWR 1034 S+ S+ + +YDHLARV EW Sbjct: 1015 SYALPSQN-RYEGDYDHLARVLEWS 1038 >gi|319403514|emb|CBI77093.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 1040 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 369/1047 (35%), Positives = 557/1047 (53%), Gaps = 24/1047 (2%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + P +F+I+P +PF + ALL+GTL++NF + LA IYVPT+RA + LR+ Sbjct: 2 TRTPRIFSISPGTPFLPHFVDALLSGTLIDNFASNGDIQTALADTLIYVPTRRAARALRT 61 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWR 120 F E + KS+ LP I LGD+ E+ F L PP+ +RLL LARLI +WR Sbjct: 62 AFFEKSHTKSSFLPTICPLGDINEKSFLFVENNENTLLNTPPIGESERLLLLARLIRLWR 121 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ ++ + +P + A+AIWLA++LA ++D IETE W L + + W Sbjct: 122 ENLPTHLRSMFGTEDVFIPATTADAIWLAQDLAHLMDEIETESVDWSRLKEIVPDMVAEW 181 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239 W + DFL I ++ W + L E +P ++ + A+ L II AG SI Sbjct: 182 WQITLDFLTIVTQSWPQILKERQQCNPAEWRNQAFKMHADILYRTQPHKTIIAAGVASSI 241 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS----SNTTYSTHPQYS 295 P A L+ +A P GA++LPGLD + WNT+ + T+ + +HPQY Sbjct: 242 PTIANLLKVIACLPKGAVILPGLDLQMDEIQWNTLGAFNKEKTTFNPSDHIAAFSHPQYH 301 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L KLL + +R V+ +G S R+ ++S++ P T+D+ I N NI Sbjct: 302 LKKLLSLMKCQRIHVREIGQQSAIKIQRAALLSEALRPASTTDLW-AQITRNDYENI--- 357 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 +D +LIEA NEREEA++I++ALR ++++ KK +AL+T DRNLARRV EL RFGI + Sbjct: 358 CADWSLIEAPNEREEALAISLALRNAIEDPKKTAALVTNDRNLARRVAAELQRFGIEAND 417 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 S +PL+ TL +++L LL IFK D +A +L+KHPL + YL EL+ Sbjct: 418 SGEMPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLTTLEYNHNYLREMAENFELLV 477 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 LRGN ++ + + T H + E A L +++ + PLV Sbjct: 478 LRGNACRINLCECDQFFKTWMQTH---FHKVSKNYMPDLQKIEEAKFLCHLLVKAVDPLV 534 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + SI++ TV +N D L +L+ E GK L++ +++ Sbjct: 535 TLIKQERE----CSINEAAIATVEVFENFGRDADNSLAHLYQNEAGKALATFLRELVSDQ 590 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S +K + EW + + L+ +V P S LFI GTLESRL +T+++G LNEG WP Sbjct: 591 SGLKFHLYEWPALFSALMATRSVSPSPGGHSRLFIWGTLESRLQTVNTVVIGSLNEGSWP 650 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T + FLSR M+ L L+ E+ IG +AHDF+ A G +I +R+ R N+ P++ SRW Sbjct: 651 IKTHNDAFLSRPMKMTLTLEPPEQRIGFSAHDFQWAMGMDQVIMSRATRVNHTPSVPSRW 710 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL + G + + RG+ +L W + LD T +RP P PPL+ +PR +S +EI Sbjct: 711 LQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAERPCPVPPLDMRPRHFSVTEI 770 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + L +DPYA+YA++IL+L + DP +RGTL+H I+ + N+N+ + ++ Sbjct: 771 ETLRHDPYAIYAKKILRLKPLKPLIHDPCSAERGTLYHAILAAFCTQIKNQNSTNMLEIL 830 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 I F+K NLPP +IIW F ++ ++ E+ + S V I I G Sbjct: 831 LTIGRKEFDKLNLPPDTEIIWWLNFENLAPFLIQWEQSLGSRERYAEV-IAQNTLIGETG 889 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + L+G ADR+D+L ++I D+KT P L PQL+LE A L G+F Sbjct: 890 VTLSGRADRLDILPDKTIEIIDFKTSTPPSSTQVINLFSPQLALETALLMQGAFVDFKGL 949 Query: 956 KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +NL YI LK K I I K + +A L +K+ K LI ++ QN +Q ++SH Sbjct: 950 TPSNLLYISLKGKGTIKPIAIINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSH 1009 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038 +KS + +YDHLAR+ EW +D Sbjct: 1010 AVPLKKS-YEGDYDHLARLLEWSIGFD 1035 >gi|49473711|ref|YP_031753.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse] gi|49239214|emb|CAF25533.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse] Length = 1039 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 376/1043 (36%), Positives = 565/1043 (54%), Gaps = 25/1043 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP +F+I+P + F + +LL+G L++NF D LA IYVPT+RA + LR+ F Sbjct: 4 KPRIFSISPGTSFLPHFVDSLLSGALLDNFAPDGDIQTALADTLIYVPTRRAARALRTAF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 E + KST LP I+ LGDV E+ F LNPP+ I+RLL LARLI WR LP Sbjct: 64 AERSDTKSTFLPAIRPLGDVDEDSFLFVENHPNTLNPPLGEIERLLLLARLIRPWRENLP 123 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 ++ ++ + +P A+AIWLA++LA ++D IETE W L + + WW + Sbjct: 124 AHLRTMFGTEDVLIPTHTADAIWLAQDLAHLMDEIETEAANWSKLKDIAPDMVAEWWQIT 183 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATA 243 DFL I ++ W + L E S+P ++ +++ AE L + PI+ AG +GSIPA + Sbjct: 184 LDFLTIVTQNWPQILKERQRSNPAEWRNQILKMHAETLYRTQPEKPILAAGVSGSIPAVS 243 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-----EKSTNITSSNTTYSTHPQYSLAK 298 L+ VA+ P GA+VLPGLD H+ WN + +K+ + HPQY L K Sbjct: 244 DLLKVVASLPKGAVVLPGLDLHMDEDQWNALGTTHEEKKTFDSFDHAANVFGHPQYHLKK 303 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL + +R V+ +G S R+ ++S++F P T+D + + + + +D Sbjct: 304 LLSLMKCQRIHVREIGQQSTIKAKRAALLSEAFRPASTTDRWIQIVRD----DYENLCAD 359 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + IEA NEREEA++I++ALR ++++ +K +ALIT DRNLARRV EL RFGI + S G Sbjct: 360 WSFIEAINEREEALAISVALRNAIEDPQKTAALITNDRNLARRVAAELKRFGIEANDSGG 419 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPL+ TL S++L LL +F+ D +A +L+KHPL K L EL LR Sbjct: 420 IPLAQTLPSTLLRLLLENVFQP-DPIAFLSLLKHPLTKLEQNRPRLREMAENFELFVLRK 478 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + ++ + + I K +H S L ++ E A LL + + + PL + Sbjct: 479 STGRINLCECDQFLEKWI---KTYSHDTFENSTLDQQKCEEARLLCYLLKKAVEPLASLI 535 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 T + +I++ TV +N DE+ L NL+ E G+ LS+ +++ S + Sbjct: 536 TQRKE----CTINEVAIATVEVFENFGRDENNSLVNLYQHEAGQALSTFLCELVSDQSGL 591 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 K EW + + LI +V P LFI GTLESRL DT+++GGLNEG WP Sbjct: 592 KFQLREWPAMFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPITA 651 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + FLSR M+ L L+ E+ IG +AHDF+ A G ++ +R+LR N++P++ SRWLQR Sbjct: 652 RNDAFLSRQMKMMLTLEPPERRIGLSAHDFQWAMGMNKVVMSRALRVNHVPSLPSRWLQR 711 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + G + ++ RG+ L W + +D T RP P PPL+ +PR +S +EI L Sbjct: 712 LETVIGKQVWKQIRTRGEILLHWAKMIDNTNMTACATRPCPIPPLKMRPRHFSVTEIPTL 771 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DPYA+YA++IL+L + DPD +RGTL+H I+ + N NT ++ I Sbjct: 772 RYDPYAIYAKKILRLKPLKALIHDPDAAERGTLYHAILAAFCTQVKNPNTANALDVLLNI 831 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 F+K NLP I+ IW + F + ++ E+ ++ V + K+ I + G+ L Sbjct: 832 GRKEFDKLNLPADIEAIWWNSFENFAPFLIQWEQSLEPRKRYAEV-VSQKIPIGTTGVTL 890 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G ADRID+L V+I D+KT P + + L+ PQL+LE A G+F+ Sbjct: 891 SGRADRIDVLPGKMVEIFDFKTSTPPSSKQVRDLLFPQLALETALFMQGAFTDFQDLTPT 950 Query: 959 NLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 NLFYI L K +I K SA L EK+ K+LI ++ QN +Q ++SH Sbjct: 951 NLFYIALNGKGEIAPQSILLKKGKKDIQSAINLGEKAWKHLIALIEYYQNPQQGYLSHAV 1010 Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036 +K + +YDHLAR+ EW Sbjct: 1011 PLKK-EYEGDYDHLARLWEWSSS 1032 >gi|319406428|emb|CBI80068.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 1043 Score = 682 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 366/1047 (34%), Positives = 556/1047 (53%), Gaps = 24/1047 (2%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 ++ P +F+I+ +PF + ALL+GTL++NF + LA IYVPT+RA + LR+ Sbjct: 5 DRTPRIFSISLGTPFLPHFVDALLSGTLIDNFASNGDIQTALADTLIYVPTRRAARALRT 64 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWR 120 F E + KS+ LP I LGD+ E+ F L PP+ +RLL LARLI +WR Sbjct: 65 AFFEKSHTKSSFLPTICPLGDINEKSFLFVENNENTLLNTPPIGESERLLLLARLIRLWR 124 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ ++ + +P A+AIWLA++LA ++D IETE W L + + W Sbjct: 125 ENLPTHLQSMFGTEDVFIPARTADAIWLAQDLAHLMDEIETESVDWSRLKEIVPDMVAEW 184 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239 W + DFL I ++ W + L E +P ++ + + L II AG SI Sbjct: 185 WQITLDFLTIVTQSWPQILKERQQCNPAEWRNQAFKMHTDILYRTQPHKTIIAAGVASSI 244 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS----SNTTYSTHPQYS 295 P A L+ +A P GA++LPGLD + WN + + T+ + +HPQY Sbjct: 245 PTIANLLKVIACLPKGAVILPGLDLQMDEIQWNALGAFNKEKTTFNPSDHIAAFSHPQYH 304 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L KLL + +R V+ +G S R++++S++ P T+D+ I + NI Sbjct: 305 LKKLLSLMKCQRIHVREIGQQSAIKIQRAVLLSEALRPASTTDLW-AQITRDDYENI--- 360 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 +D +LIEA NEREEA++I++ALR ++++ KK +AL+T DRNLARRV EL RFGI + Sbjct: 361 CADWSLIEAPNEREEALAISLALRNTIEDPKKTAALVTNDRNLARRVAAELQRFGIEAND 420 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 S IPL+ TL +++L LL IFK D +A +L+KHPL + YL EL+ Sbjct: 421 SGEIPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLTTLEYNHNYLREMAENFELLV 480 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 LRGN ++ + + T + + + E A L +++ + PLV Sbjct: 481 LRGNSCRINLCECDQFFKTWMQTHFHKISKSYM---PDLQKIEEAKFLCHLLVRAVEPLV 537 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + SI++ TV +N D L +L+ E GK L++ +++ Sbjct: 538 TLIKQERE----CSINEAAIATVEVFENFGRDADNSLAHLYQNEAGKALATFLRELVSDQ 593 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S +K + EW + + L+ +V P + LFI GTLESRL +T+++G LNEG WP Sbjct: 594 SGLKFHLYEWPALFSALMATRSVSPSLGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWP 653 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T + FLSR M+ L L+ E+ IG +AHDF+ A G +I +R+ R N+ P++ SRW Sbjct: 654 IKTHNDAFLSRPMKMTLTLEPPEQRIGLSAHDFQWAMGMDQVIMSRATRVNHTPSVPSRW 713 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL + G + + RG+ +L W + LD T +RP P PPL+ +PR +S +EI Sbjct: 714 LQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAERPCPVPPLDMRPRHFSVTEI 773 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + L +DPYA+YA++IL+L + DP +RGTL+H I+ + N+N + ++ Sbjct: 774 ETLRHDPYAIYAKKILRLKPLKPLIHDPCSAERGTLYHAILAAFCTQIKNQNATNMLEIL 833 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 I F+K NLPP I+IIW F ++ ++ E+ + S V I I G Sbjct: 834 LTIGRKEFDKLNLPPDIEIIWWLNFENLAPFLIQWEQSLGSRKRYAEV-IAQNTLIGETG 892 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + L+G ADR+D+L V+I D+KT P L PQL+LE A L G+F Sbjct: 893 VTLSGRADRLDILPDKTVEIIDFKTSTPPSSTQVINLFSPQLALETALLMQGAFVDFKGL 952 Query: 956 KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +NL YI LK K I I K + +A L +K+ K LI ++ QN +Q ++SH Sbjct: 953 TPSNLLYISLKGKGTIKPIAIINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSH 1012 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038 +KS + +YDHLAR+ EW +D Sbjct: 1013 AVPLKKS-YEGDYDHLARLLEWSIGFD 1038 >gi|319898221|ref|YP_004158314.1| hypothetical protein BARCL_0035 [Bartonella clarridgeiae 73] gi|319402185|emb|CBI75716.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 1040 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 367/1043 (35%), Positives = 557/1043 (53%), Gaps = 24/1043 (2%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 +KP VF+I+P +PF + ALL+GTL++NF + LA IYVPT+RA + LR+ Sbjct: 2 TRKPRVFSISPGTPFLPYFVDALLSGTLIDNFASNGNIQTALADTLIYVPTRRAARALRT 61 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL--NPPVSNIQRLLELARLILIWR 120 F E + +S+ LP I LGD+ EE+ + L PP+ I+RLL LARLI +WR Sbjct: 62 AFFEKSHTQSSFLPTICPLGDINEERCLFIENNTNTLINTPPIGEIERLLLLARLIRLWR 121 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ ++ + +P + A+AIW A++LA ++D +ETE W L + + W Sbjct: 122 ENLPTHLRSMFDTEDVFIPATTADAIWFAQDLARLMDEVETESVDWSKLKEIVPDMVAEW 181 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239 W + DFL I ++ W + L E +PV + + A+ L + PII AG T SI Sbjct: 182 WQITLDFLTIVTQSWPQILKERQQCNPVEWLNQTFKMHADILHRTQPNKPIIAAGVTSSI 241 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT----TYSTHPQYS 295 P A L+ +A P GA++ PGLD + WN + + + +HPQY Sbjct: 242 PTIANLLKVIAYLPKGAVIFPGLDVQMDETQWNALGALNKEKIIFDPSHHTAVFSHPQYH 301 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L KLL + +R V+ +G S R+ ++S++ P T+D+ + + + + Sbjct: 302 LKKLLSLMKCQRIHVREIGQQSAIKIRRAALLSEALRPASTTDLWAQIVRD----DYEDI 357 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 +D +LIEA NEREEA++I+IALR ++++ KK +ALIT DRNLARRV EL RFGI + Sbjct: 358 CADWSLIEAPNEREEALAISIALRNAIEDPKKNAALITNDRNLARRVAAELQRFGIEAND 417 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 S IPL+ TL S++L LL IFK D +A +L+KHPL + YL EL+ Sbjct: 418 SGEIPLAQTLPSTLLRLLLENIFKPGDPIAFLSLLKHPLTTLEYNRNYLREMTENFELLV 477 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 LRGN + ++ + K + H L + E A L +++ + PLV Sbjct: 478 LRGNASPINLCECDQFFKTW---MKTHFHKISNNCALDLQKTEEAGFLCHLLVKAVEPLV 534 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +I++ TV +N D L +L+ E G L++ +++ Sbjct: 535 FLIKQDRE----CTINEAAIATVKVFENFGRDADNSLRHLYQNEAGTALATFLRELVSDQ 590 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S +K EW + + LI +V P LFI GTLESRL +T+++G LNEG WP Sbjct: 591 SGLKFRLHEWPALFSALIATRSVSPSPGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWP 650 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T + FLSR M+ LNL+ E IG +AHDF+ A G +I +R+ R N+ P++ SRW Sbjct: 651 IKTHNDAFLSRPMKMTLNLEPPEHRIGLSAHDFQWAMGMDQVIMSRATRINHTPSVPSRW 710 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL + G + ++ RG+ L W + LD T +RP P PPL+ +PR +S +EI Sbjct: 711 LQRLETVVGKQVWKQIRTRGEILLHWAKMLDNTNSIVPAERPCPVPPLDIRPRHFSVTEI 770 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + L +DPYA+YA++IL+L + DP T+RGTL+H I+ + N+N ++ ++ Sbjct: 771 ETLRHDPYAIYAKKILRLKPLKALIHDPCSTERGTLYHAILAAFCTQIKNQNATDMLDIL 830 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 I F+K NLPP I+ +W F + ++ E+ + S V I I G Sbjct: 831 MTIGRKEFDKLNLPPDIEAVWWLNFENFAPFLIQWEQSLGSRERYAEV-IAQHTLIGETG 889 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + L+G ADRID+L + ++I D+KT P L PQL+LEAA L G+F Sbjct: 890 VTLSGRADRIDILPNKTIEIIDFKTSIPPSSTQVINLFSPQLALEAALLMQGAFIDFKGL 949 Query: 956 KVANLFYIRLKQKFKIDCI----TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +NL YI LK+K +I I K + + L +K+ K+LI ++ QN +Q ++S+ Sbjct: 950 TPSNLLYIPLKRKGEIKPIAIINKKTKDQQNVISLGKKAWKHLISLMNYYQNPQQGYLSN 1009 Query: 1012 LRLSEKSNIQSEYDHLARVAEWR 1034 +KS + +YDHLAR+ EW Sbjct: 1010 AIPLKKS-YEGDYDHLARLLEWS 1031 >gi|319404940|emb|CBI78542.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 1040 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 364/1045 (34%), Positives = 553/1045 (52%), Gaps = 24/1045 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP VF+I+P +PF + ALL+GTL++NF + + L IYVPT+RA + LR+ F Sbjct: 4 KPRVFSISPGTPFLPHFVDALLSGTLIDNFAPNGNIQIALTDTLIYVPTRRAARALRTAF 63 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNK 122 E + +S+ LP I LGD+ EE + + L P+ +RLL LARLI +WR Sbjct: 64 FEKSHTQSSFLPTICPLGDINEESYFFTENNTNTLVNTSPIGESERLLLLARLIRLWREN 123 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP ++ ++ + +P + A+A+WLA++LA ++D +ETE+ W L + + WW Sbjct: 124 LPTHLRSMFGTEDIFIPATTADAVWLAQDLARLMDEVETEDVDWLRLKEIVPDMVAEWWQ 183 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241 + DFL I ++ W + L E +PV ++ + + L II AG T SIP Sbjct: 184 ITLDFLTIVTQSWPQILKERQQCNPVEWRNQAFKIHTDILYRTQPHKTIIAAGVTSSIPT 243 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT----TYSTHPQYSLA 297 A L+ +A P GA++LPGLD + WN + + T + +HPQY L Sbjct: 244 IANLLKVIACLPKGAVILPGLDLQMDETQWNALGALNKEKTIFDPSHHIAAFSHPQYHLK 303 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 KLL ++ +R V+ +G + R+ ++S++ P T+D+ I + + + + Sbjct: 304 KLLSLMECQRIHVREIGQQNTIKTQRAALLSEALRPASTTDLWAKIIRD----DYENICA 359 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 D +LIEA NEREEA++I+IALR ++++ KK +ALIT DRNLARRV EL RFGI + S Sbjct: 360 DWSLIEAPNEREEALAISIALRNAIEDPKKTAALITNDRNLARRVAAELQRFGIEANDSG 419 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 IPL+ TL S++L LL IFK D +A +L+KHPL + YL EL+ LR Sbjct: 420 EIPLAQTLPSTLLRLLLENIFKPGDPIAFLSLLKHPLTTLEYNRNYLREMAENFELLVLR 479 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 GN ++ + T +H + E A L +++ + PLV+ Sbjct: 480 GNACRINLCECDQFFRTWKQTH---SHEISNNCISDLQKIEEADFLCHLLVKAVEPLVSL 536 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + +I++ TV +N D L +L+ E GK L + +++ S Sbjct: 537 IKQERE----CTINEAAIATVEVFENFGRDVDNSLAHLYQNEAGKALVTFLRELVSDQSG 592 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 +K EW + + L+ +V P LFI GTLESRL +T+++G LNEG WP Sbjct: 593 LKFCLHEWPALFSALMATRSVSPSPGGHPRLFIWGTLESRLQTVNTVVIGSLNEGSWPIK 652 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T + FLSR M+ L L+ E+ IG +AHDF+ A G +I +R+ R N+ P++ SRWLQ Sbjct: 653 THNDAFLSRPMKITLTLEPPEQRIGLSAHDFQWAMGMDKVIMSRATRVNHTPSVPSRWLQ 712 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G + + RG+ L W + LD T +RP P PPL+ +PR +S +EI+ Sbjct: 713 RLETVVGKQVWKQICTRGELLLHWAKMLDNTNSITPAERPCPVPPLDIRPRHFSITEIET 772 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L +DPYA+YA++IL+L + DP +RGTL+H I+ + N N ++ ++ Sbjct: 773 LRHDPYAIYAKKILRLKPLKALIHDPCSAERGTLYHTILAAFCTQIKNHNATDMLDILLT 832 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 I F+K NLPP I+ +W F + ++ E+ + V I I G+ Sbjct: 833 IGRKEFDKLNLPPDIEAVWWPNFENFAPFLIQWEKSLGPRKRYAEV-IAQNTLIGETGVT 891 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 L+G ADR+D+L V+I D+KT P L PQL+LE A L G+F Sbjct: 892 LSGRADRLDILPDKTVEIIDFKTSIPPSATQVINLFSPQLALETALLMQGAFIDFKGLIP 951 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADE----LSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 +NL YI LK+K +I IT KK E L +K+ K LI ++ QN +Q ++SH Sbjct: 952 SNLLYIPLKRKGEIKPITVINKKTKDQENAISLGKKAWKYLISLINYYQNPQQGYLSHAV 1011 Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038 +KS + +YDHLAR+ EW +D Sbjct: 1012 PLKKS-YEGDYDHLARLLEWSIGFD 1035 >gi|222084228|ref|YP_002542754.1| double-strand break repair protein AddB [Agrobacterium radiobacter K84] gi|221721676|gb|ACM24832.1| double-strand break repair protein AddB [Agrobacterium radiobacter K84] Length = 1063 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 467/1050 (44%), Positives = 648/1050 (61%), Gaps = 18/1050 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 + + TI PF + + AL +G L E+FR+DP +PL LA VTI++PT+RA + LRSEF Sbjct: 6 RKRILTIPAGLPFLKTLASALCDGRLTEHFRHDPSDPLSLAKVTIFLPTRRAARVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P++N RLLELARLIL WRNK Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFEEALPATADLAQPLANTARLLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP I++D++ +SPL P SPA+AIWLA+NLA++ID IETE++ W L L E + +WW Sbjct: 126 LPQIVRDIHSDSPLVAPASPADAIWLARNLAELIDSIETEDRDWAALGDLSTEDHALWWQ 185 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPA 241 L A+FL+IAS +W RL EL SSP ++ A++RAEA+ + GPIIIAGSTGS+PA Sbjct: 186 LTAEFLQIASAFWPARLEELGKSSPARHRNAILRAEAQRIAIMQHAGPIIIAGSTGSVPA 245 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA L++ VA+ P G IVLPGLD +P W + ++ + T +H QY L+ LL Sbjct: 246 TAELIAAVASLPQGVIVLPGLDLSMPEEDWQLVAPETGIGERVDPTTRSHSQYGLSLLLK 305 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L R +V+ + + +M R+ V+S++ P + I F+DVAL Sbjct: 306 RLHTPRSEVETVAEATEDMQMRAEVLSRALAPAKATSGWGAWQQTLAPDAISNAFADVAL 365 Query: 362 IEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDIS 416 IEA NEREEA +IAIALR++L++ + +ALIT DRNLARRV EL RFGI D S Sbjct: 366 IEAANEREEATAIAIALRLALEKPGQDGGESQAALITPDRNLARRVTAELARFGITADDS 425 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 AG PL+ T ++L LL A + D +AI +L+KHPLA+FG P+ L +ALE++AL Sbjct: 426 AGTPLTATPQGALLQLLLEATLRPGDPVAIVSLLKHPLARFGLPQDALQLGVDALEILAL 485 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 RG DI L+ L+ ++A Q N H P W+ L+ E + A L + PL + Sbjct: 486 RGGIADVDIGALEPLLDRQLAEQAKNRHTPQWRKSLAPEAVDRARELARQVSGACEPLAS 545 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+ G ++S+W + T L+ V +DE L LW E G TL+SL +II+T Sbjct: 546 ALSQ-QSSDGLPTLSEWAERTGRALEAVAIDERGSLAALWSGEAGDTLASLLKEIIDTDG 604 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 ++A+ +WIDI+ L G+ VKP+ LFI GTLE+RL + DTLILGGLNEG WP Sbjct: 605 QLEADGPQWIDIMAALCAGQAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGSWPG 664 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 TA NPF+SR M++++ L+ E+ IGQ AHDFEMANGTR LIY+R+LR+ + PT+ASRWL Sbjct: 665 QTANNPFISRTMKTEIGLEPPERRIGQLAHDFEMANGTRDLIYSRALRQGSTPTVASRWL 724 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 QRL+ LGG F LK RG Y W +D Q +RP P PP E QP++YSFSE+ Sbjct: 725 QRLIALGGKAFTSELKARGDQYRHWAGMIDQGENQAPAQRPAPRPPAELQPKSYSFSEVG 784 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 +L DPYA+YARR+L+LD I F +DP +RGTL+H II I++ TP+ + M Sbjct: 785 RLRRDPYAIYARRVLRLDPIDPFNRDPGPAERGTLYHKIIDRFIREGHIAGTPDASLAMD 844 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 I+ F+ E LP HID +WR F +++ +F+ E + + I K +PA + IE IGI Sbjct: 845 HILTELFDAEQLPVHIDSVWRPRFREVARAFIIWEAERRPEIRKTATEVPAGVQIEPIGI 904 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 LTG ADRID DI DYKTG NP A+ L+DPQL+LEA ALKAG+F ID Sbjct: 905 RLTGVADRIDFKGGKAADIIDYKTGYNPSPAQARTLLDPQLALEAYALKAGAFRDIDALV 964 Query: 957 VANLFYIRLKQKFKID---------CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 NL Y+RL+ + + SA +L+++S+ L++ V+LLQ+GE+ Sbjct: 965 PENLLYVRLRPGDRFKVDQVNNELSSRGGKTETKSALDLAQESMDQLVKFVSLLQSGEKG 1024 Query: 1008 FISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L +++ +YDHLARV+EW Sbjct: 1025 FSSRLIPAQQFEYGGDYDHLARVSEWSTAE 1054 >gi|153008154|ref|YP_001369369.1| double-strand break repair protein AddB [Ochrobactrum anthropi ATCC 49188] gi|151560042|gb|ABS13540.1| Double-strand break repair protein AddB [Ochrobactrum anthropi ATCC 49188] Length = 1052 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 379/1050 (36%), Positives = 582/1050 (55%), Gaps = 25/1050 (2%) Query: 1 MHNKKPN-----VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR 55 M ++P +F+I P +PF ALL G LVE F +P +PL LA+ TIYVPT+R Sbjct: 1 MSARRPRDGKQRLFSIPPGTPFLPAFAKALLEGRLVEGFPGNPSDPLALANATIYVPTRR 60 Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELA 113 A + LRS ++ KS ILP IK LGDV E+ + S ++NPP+ +RLL LA Sbjct: 61 AARALRSILVDRNSTKSAILPTIKPLGDVDEDAAFFNAGSSGVFDINPPIGTAERLLLLA 120 Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 RLI WR LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW +L + Sbjct: 121 RLIRPWRESLPSHVRALFGVDDVSVPATTADAIWLARDLAGLMDQVETDGAKWSELAGIA 180 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIII 232 E WW + FL I + W + L E S+P ++ L+ +E + L GP+I+ Sbjct: 181 PEDLADWWQVTLGFLNIVTNLWPDILAERRLSNPAAHRNDLIWSEVKRLRAHPPAGPVIV 240 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 AGSTGSIPATA L+S +A+ PNGA+VLPGLD + A W + + N + HP Sbjct: 241 AGSTGSIPATAELISAIADLPNGAVVLPGLDRDLDDAAWQML-----ASATDNPSTFGHP 295 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IP 350 Q+ L KLLD + R DV+ L ++ R V+S++ P +T+D + Sbjct: 296 QFGLRKLLDAMQTLRADVEHLDDMPASKRLRERVVSEALRPAETTDAWGQLARDPDMQPT 355 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 +++ + LIE NEREEA+++A+ LR ++++ K +AL+TADRNLARRV EL RFG Sbjct: 356 ALRQAAQTIDLIETANEREEALTVALVLRDAINDEGKTAALVTADRNLARRVVGELARFG 415 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I+ D S G L +++L L+ +F D +A+ LVKHPL + P A Sbjct: 416 IDADDSGGRHLRDVETTTLLRLLVETVFNPGDPVALLALVKHPLLRLEAPRIERRLAAET 475 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 LEL+A RG ++DL + R+ P W ++ + A L + + Sbjct: 476 LELIAFRGGTGRASVLDLPAFFDRRLEESAGQPWQPAWHDTVTPDMIAAARNLCESLSNA 535 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + PLV + T I + + TV L+N+ +E + + E G+ L++ Sbjct: 536 MAPLVPFVIAGRRTE----IGEIARATVEALENLARNEKASIAPFYSGERGEQLATFLRG 591 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 ++ + + + A EW ++ L+ GETVKP LFI G LE+RL DT+++GGLN Sbjct: 592 LVSSEAGLDFEASEWPAVLDALMAGETVKPHPGGHPRLFIWGALEARLQTMDTVVIGGLN 651 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EG WP T +PF+SR M+S + L E+ G AAHDF+MA G H++ TRS R +N PT Sbjct: 652 EGSWPARTRNDPFMSRPMKSMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPT 711 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + SRWLQRL + G D ++KRG ++ W+R++D P KRP+P PP+ A+P+ + Sbjct: 712 VPSRWLQRLETVLGADVTAEMRKRGVRFIQWSREIDQAPDVPFVKRPQPAPPVLARPKHF 771 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S +EI+ L DPYA++A++ILKL + +DP +RGTLFH+I+ ++ I+ P+ Sbjct: 772 SVTEIETLRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQEAIDPLAPD 831 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK-M 889 + ++ F +LP I+ +W F + FL E + +++ F I + Sbjct: 832 AAERLMELGRVLFADMDLPTEIEAVWWPRFTALIPQFLAWERERAYNVQTRFAEISSDKR 891 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 +E +GI L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F Sbjct: 892 EVEGLGITLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLVRGAF 951 Query: 950 SQIDCRKVANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 ++ + ++L Y+RLK ++ I + +A L E+S + L +++ Q Sbjct: 952 RELGSVRASDLTYVRLKAGGEVKPESILKIGRPPSEKTAPALGEESWQRLAQLLVEYQKP 1011 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 E+ ++S ++++ +YDHLARV EW Sbjct: 1012 EKGYLSRALPFRETDLTGDYDHLARVLEWS 1041 >gi|325291477|ref|YP_004277341.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3] gi|325059330|gb|ADY63021.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3] Length = 1061 Score = 655 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 446/1051 (42%), Positives = 637/1051 (60%), Gaps = 25/1051 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V TIA +PF + + L +GTL ++YDP +PL LA VTIYVPT+R+ + LRSEF++ Sbjct: 9 RVLTIAAGTPFLKTLAETLCDGTLTAGYKYDPADPLSLAKVTIYVPTRRSARVLRSEFVD 68 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLP 124 + G +S ILP+I+ LG+ ++ ++ +L PP+S R +ELARLIL WRN LP Sbjct: 69 LLGGRSAILPLIRPLGETDDDSGFFEIENPEIMDLAPPISGTGRQIELARLILAWRNSLP 128 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 D I+ ++ +SPL P SPA+AIWLA+ L ++ID ++TEEK+WE L L + WW L Sbjct: 129 DAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKEWEALAHLDTGDHAQWWQLT 188 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243 ADFLKIAS +W RL ELN +S ++ ++RAEA L GPI++AGSTGSIPA A Sbjct: 189 ADFLKIASVFWPARLAELNRTSAGRHRNGILRAEANRLANLPDTGPIVVAGSTGSIPAAA 248 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L+++VA+ P G +VLPGLD +P W I E ++ + TH QY L LL L Sbjct: 249 DLIASVASLPQGVVVLPGLDLTMPEEQWEAIAE-----DPTDPSSRTHSQYGLYMLLQKL 303 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 DI R+DV ++G + +++ R+ V S + P ++ N + + F+ LIE Sbjct: 304 DIMRDDVVQIGVIDSDLEKRAAVFSAALAPAKSTSDWNRWREDKQPGFFDDAFAAATLIE 363 Query: 364 ADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI 419 A NEREEA +IA+ALR++L+ ++ALIT DR LARRV EL RFGI D SAG Sbjct: 364 AANEREEATAIAVALRLALEAPGAGRPSQAALITPDRGLARRVATELQRFGIEADDSAGT 423 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PLS T + + L AI + D + + +L+KHPL++FG + ++A ALEL+ALRG Sbjct: 424 PLSATPQAGLTQLALEAILRPGDPVPVISLLKHPLSRFGLSLEAFTKASKALELIALRGG 483 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK- 538 + +I +L++++ ++A Q+++ H P W+ L E + A L I PL + Sbjct: 484 RVETEIGNLEAVLDAQLAAQRDDRHPPAWRLALPEGSVDAARDLARRIAVSTEPLGSAFV 543 Query: 539 ---TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + S L +SDW + T ++ +C D++ L LW E G LS LF +++E+G Sbjct: 544 RRDRSGRSFTDKLPLSDWAERTGRVIEAICADDNNDLATLWSGEAGDKLSGLFGELMESG 603 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + A+ +W DI L+ GE++KP+ + +FI G LE+RL + DT+++GGLNEG+WP Sbjct: 604 EILDADGPQWADIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEGLWP 663 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 TA NPFLSR M++ + L+ E+ IGQ AHDFEMANGTR + Y+R+LR+ + P +ASRW Sbjct: 664 GQTANNPFLSRNMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYSRALRQGSTPAVASRW 723 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRLL LGG DF D LKKRG+ Y W +D + Q KRP P PP + QP++YSFSE+ Sbjct: 724 LQRLLALGGEDFADQLKKRGETYRHWAALMDASIDQEAAKRPAPKPPADLQPKSYSFSEV 783 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +L DPY++YARRILKL+ + F +DP+ DRGTL+H II ++ TP M Sbjct: 784 GRLRRDPYSIYARRILKLNPLDGFNRDPNAADRGTLYHAIIERYSREGHIPGTPASLEAM 843 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++I+D F+ E+LP H+D+IWR F ++ +F++ E++ SI + F A I G Sbjct: 844 QRILDESFDAEDLPAHVDVIWRPRFEAVARAFIDWEKERHPSIRRSFFEARAGQEIPEAG 903 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I LTG ADRID+ G DI DYKTG P A+ L+DPQL+LEAAAL G+F + + Sbjct: 904 IRLTGIADRIDIKTGGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFREAGSQ 963 Query: 956 KVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 NL Y+RL+ + K SA EL+ +S+ L + V L++GE Sbjct: 964 TPENLIYVRLRPGTRFFADQVNNEHSNRGGKKAPKSAIELATESIDQLAKFVRSLRDGEN 1023 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L E+ + EYDHLARV+EW Sbjct: 1024 GFASRLVPEEQQSYGGEYDHLARVSEWSTAE 1054 >gi|15887383|ref|NP_353064.1| hypothetical protein Atu0024 [Agrobacterium tumefaciens str. C58] gi|15154886|gb|AAK85849.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 1061 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 452/1051 (43%), Positives = 633/1051 (60%), Gaps = 25/1051 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V TIA +PF + + L +G L +RYDP +PL LASVTIYVPT+R+ + LRSEF++ Sbjct: 9 RVLTIAAGTPFLKTLAETLCDGRLTAGYRYDPTDPLSLASVTIYVPTRRSARVLRSEFVD 68 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLP 124 + G +S ILP+I+ LG+ ++ D+ +L PP+S R +ELARLIL WRN LP Sbjct: 69 LLGGRSAILPLIRPLGETDDDSGFFDIENPEIMDLAPPISGTGRQIELARLILAWRNSLP 128 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 D I+ ++ +SPL P SPA+AIWLA+ L ++ID ++TEEK WE L L ++ WW L Sbjct: 129 DAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKDWEALQHLDTGEHAQWWQLT 188 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243 ADFLKIAS +W RL ELN SS ++ A++RAEA+ L GPII+AGSTGSIPA A Sbjct: 189 ADFLKIASVFWPARLAELNRSSAGRHRNAILRAEADRLANLPDTGPIIVAGSTGSIPAAA 248 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L++ VA P G +VLPGLD +P W I E ++ + THPQY L LL L Sbjct: 249 DLIAAVAALPQGTVVLPGLDLAMPEEQWQAIIE-----DPTDPSSRTHPQYGLYMLLQKL 303 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + R++V ++G + ++ R+ V S + P ++ N + F+ LIE Sbjct: 304 GMSRDEVVQIGALDRDLEKRAAVFSAALAPAKSTSDWNGWREGRDPGFFDEAFAAATLIE 363 Query: 364 ADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI 419 A N+REEA +IA+ALR++L+ ++ALIT DR LARRV EL RFGI D SAG Sbjct: 364 AANQREEATAIAVALRLALEAPGPGRPSQAALITPDRGLARRVATELQRFGIEADDSAGT 423 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PLS T + + L AI + D + I +L+KHPLA+FG ++A ALEL+ALRG Sbjct: 424 PLSATPQAGLTQLALEAILRPGDPVPIISLLKHPLARFGLSGDAFTKASKALELIALRGG 483 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK- 538 + +I +L+ ++ ++ Q++N H P W+ L E + A L I PL + Sbjct: 484 RVETEIGNLEVVLDAQLLAQRDNRHPPAWRVALPEGSVDAARDLARRIAIATEPLGSAFI 543 Query: 539 ---TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + L +SDW T ++ +C D+ L LW E G LSSLF++++E+G Sbjct: 544 RRDRSGRAFTDKLPLSDWAGRTGRVIEAICADDSNDLAALWSGEAGDKLSSLFAELMESG 603 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + A+ +WIDI L+ GE++KP+ + +FI G LE+RL + DT+++GGLNEG+WP Sbjct: 604 DILDADGPQWIDIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEGLWP 663 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 TA NPFLSR M++ + L+ E+ IGQ AHDFEMANGTR + YTR+LR+ + P +ASRW Sbjct: 664 GQTANNPFLSRSMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYTRALRQGSTPAVASRW 723 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRLL LGG +F + L+KRG+ Y W +D + Q KRP P PP + QP++YSFSE+ Sbjct: 724 LQRLLALGGENFAEQLRKRGETYRHWAGLMDESIDQETAKRPAPKPPADLQPKSYSFSEV 783 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +L DPYA+YARRILKLD + F +DP+ DRGTL+H II ++ TP M Sbjct: 784 GRLRRDPYAIYARRILKLDPLDPFNRDPNAADRGTLYHGIIERYSREGHIPGTPASLEAM 843 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++I+D F+ ENLP H+D+IWR F ++ +F++ E++ SI + F A I G Sbjct: 844 QRILDDCFDAENLPVHVDVIWRPRFAAVARAFIDWEKERHPSIRRSFFEARAGQEIAEAG 903 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I LTG ADRID+ SG DI DYKTG P A+ L+DPQL+LEAAAL G+F + Sbjct: 904 IRLTGVADRIDIKTSGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFRETGSP 963 Query: 956 KVANLFYIRLKQKFKIDCIT---------NDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 NL Y+RL+ + + SA EL+ +S+ L + V L++GE Sbjct: 964 TPENLIYVRLRPGDRFFADQVNNEHSNRSGKRPPKSAIELATESIDQLAKFVRSLRDGEN 1023 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L E+ + EYDHLARV+EW Sbjct: 1024 GFASRLVPEEQQSYGGEYDHLARVSEWSTAE 1054 >gi|209551531|ref|YP_002283448.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537287|gb|ACI57222.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1064 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 453/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P + TI F + + L +G L FR++ +PL L+ VTIY+PT+RA++ LRSEF Sbjct: 6 QPRILTIPAGLSFLKTLATTLCDGRLTPLFRHEADDPLSLSRVTIYLPTRRAVRVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL WRNK Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y WW Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241 L A+FL+IAS +W ERL EL SSP ++ A++RAEA L GPIIIAGSTGS+PA Sbjct: 186 LTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEASRLSATKPTGPIIIAGSTGSVPA 245 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA L++ VAN P G IVLPGLD +P W + + + +N +HPQY L+ LL Sbjct: 246 TADLIAAVANLPEGVIVLPGLDLAMPERHWQMVAPELSPGQHANPASRSHPQYGLSSLLK 305 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + R DV L ++ R+ ++S++ +P + + E F+DV+L Sbjct: 306 RLKLTRADVTLLDRPEADLDRRAEILSRALVPAEATSDWGAWKSELPEGAFSSAFADVSL 365 Query: 362 IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417 IEA NEREEA +IAIALR++L+ + +ALIT DRNLARRV EL+RFGI D SA Sbjct: 366 IEAANEREEATAIAIALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PL+ T ++L LL A + D +AI +L+KHPLA+FG L LEL+ALR Sbjct: 426 GTPLAATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLDRAALISTTETLELLALR 485 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-- 535 G DI L+ L+ ++A Q + H P W+ L+ + E A L + Q PL Sbjct: 486 GGVAEVDISRLEPLLTHQLAEQAGDRHAPQWRKALAPDAAEAAYDLARRVTQATEPLASA 545 Query: 536 --TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 ++ + ++S+W + T L+ V D H L +LW E G L++L ++I+ Sbjct: 546 LMRHRPEVRGRTASFTLSEWAERTGRSLEAVAADPHGNLADLWSGEAGDALAALLGEVID 605 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 T ++A+ +WIDI+ L G +KP+ LFI GTLE+RL + DT+ILGGLNEG Sbjct: 606 TNGQMEADGPQWIDIMAALAAGHALKPRALSHPRLFIFGTLEARLQSVDTMILGGLNEGT 665 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP TA NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS Sbjct: 666 WPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 RWLQRLL L G F LK RG +L W +D Q +RP P PPL QP +YSFS Sbjct: 726 RWLQRLLALAGETFEAELKGRGNRFLQWAGLIDRGEAQAPAQRPSPKPPLTLQPTSYSFS 785 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ +L DPYA+YARRIL+LD + F +DP +RGTL+H II I++ TP+ Sbjct: 786 EVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGTPDAAA 845 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 M++I+ F+ E LPPHID +WR F ++ +FL+ E + I K + + +E+ Sbjct: 846 AMERILSELFDMEQLPPHIDAVWRPRFRAVAGAFLDWEAGRRPGIRKTLTEVRGGVELEA 905 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 I I L G ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL+ G+F + Sbjct: 906 INIRLNGVADRIDVTGPHAADIIDYKTGYNPSPAQARVLLDPQLALEAAALRDGAFRDVG 965 Query: 954 CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 +L Y+RL+ + + K SA +L+E+S+ L++ V+LLQ+GE+ Sbjct: 966 SLIPQDLLYVRLRPGRRFQVDTVNNESSARSDKAKSAMDLAEESIDQLVKFVSLLQSGEK 1025 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L +++ + +YDHLARV+EW Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|150398435|ref|YP_001328902.1| double-strand break repair protein AddB [Sinorhizobium medicae WSM419] gi|150029950|gb|ABR62067.1| Double-strand break repair protein AddB [Sinorhizobium medicae WSM419] Length = 1059 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 458/1048 (43%), Positives = 644/1048 (61%), Gaps = 16/1048 (1%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 PNVFTI PF R + L +G L FRYDP PL LA VTI+VPT+R+ + LRSEF+ Sbjct: 5 PNVFTIPAGLPFLRTLAEKLCDGKLTAGFRYDPTEPLALAGVTIFVPTRRSARVLRSEFV 64 Query: 66 EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 ++ G +S ILP+I++LG+ ++ F L +L PP+S RL+EL RLIL WRN+L Sbjct: 65 DLLGGRSAILPVIRALGETDDDSGFFDTQLPAILDLAPPLSGTARLIELGRLILAWRNRL 124 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 P ++ D++ ESPL P SPA+AIWLA+NLA++ID IETEE W+ L L ++ +WW L Sbjct: 125 PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242 FLKIA YW ERL EL SSP ++ A+++AE + + G GPIIIAGSTGSIPAT Sbjct: 185 TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVTGPIIIAGSTGSIPAT 244 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300 A L++ V P+G IVLPGLD + A W I S N THPQY +LL Sbjct: 245 AALIAAVKALPHGTIVLPGLDGTMSNAEWQLIAGEADGAGAFSRNPASRTHPQYGFHRLL 304 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + I+R+DV L + +++ RS V+S++ LP D +++ L + + F+ VA Sbjct: 305 RRMGIERDDVPALASAPDDLDCRSAVLSRALLPADATNVWMQARLSFEPGRLFSAFAGVA 364 Query: 361 LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 LIEA NEREEA +IAIALR++L+ + + ++ALIT DR+LARRV EL RFGI D SAGI Sbjct: 365 LIEAANEREEATAIAIALRLALEGDEESQAALITPDRDLARRVGAELARFGIEADDSAGI 424 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PLS T ++ +L A + +D +A+ L+KHPLA+FG K RA + LELVALRG Sbjct: 425 PLSATAAGTLARLMLEATLRPDDPVALVALLKHPLARFGGSAKDARRAADVLELVALRGG 484 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + DI L+ ++ +A + H P W++ + +D LA L I + PL + + Sbjct: 485 TDVVDISALEPVLDKALAKHQAERHPPPWRNGIGLDDIALARALARRIATAVEPLASTLS 544 Query: 540 NKNSTCGNLS----ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + S +SDW + T L+ V +DE L +LW E G+TLS+L I+ET Sbjct: 545 ADAEIGRHRSTVLSLSDWAERTGRALEAVAVDERGSLGDLWASEAGETLSTLLRGIMETD 604 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 ++++ +W DI+ L E VKP+ + +FI G LESRL + D ++LGG+NEG WP Sbjct: 605 GQMESDGAQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + T+ +PFLSR M++ + L+ E+ IGQ AHDF+MA GTR LI++RS+R+ + PT+ASRW Sbjct: 665 RQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRKLIFSRSMRQGSAPTVASRW 724 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL LGG L+ G YL W R LDY +QP +RP+P PP E QPR YSFSEI Sbjct: 725 LQRLQALGGERLTKQLRANGANYLHWMRILDYGERQPLSERPEPKPPAELQPRKYSFSEI 784 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +L DPYAVYARRIL+L+ I F +DP +RG L+H I+ +K + + E M Sbjct: 785 TRLRRDPYAVYARRILRLEPIDPFNRDPGAAERGQLYHRIVERFVKGGFDPASREGEEAM 844 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++ D F++E LP HID IWR F + +FL E + + + + F +PA M + + Sbjct: 845 IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLGWERERRRGVSRSFTEVPAAMDLGTAD 904 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I LTG ADR+D L G +DI DYKTG +P + A+ L+DPQL+LEAAAL+AG+F + Sbjct: 905 IRLTGIADRLDRLTDGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFHTVGAA 964 Query: 956 KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + +L Y+RLK + + K+ S ++L++++L L +++ L +G F Sbjct: 965 RPHSLRYVRLKPGARFAVDTVNNEGARSKETKSTEQLADEALAELRKLLAALVSGRHGFA 1024 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037 S L + ++ + EYDHLARVAEW Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052 >gi|222147061|ref|YP_002548018.1| double-strand break repair protein AddB [Agrobacterium vitis S4] gi|221734051|gb|ACM35014.1| double-strand break repair protein AddB [Agrobacterium vitis S4] Length = 1062 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 459/1055 (43%), Positives = 639/1055 (60%), Gaps = 21/1055 (1%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M + + +FTI P PF R + L +G L FRYDP +PL L+ VTI VPT+RA++ L Sbjct: 2 MSSLQARIFTIPPDRPFLRLIAETLCDGRLAPGFRYDPADPLSLSKVTILVPTRRAVRVL 61 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADL--LLSYNLNPPVSNIQRLLELARLILI 118 R++F+E+ G +S ILP+IK LG+ ++ D LNPP+SN RLLELA+LIL Sbjct: 62 RAQFVEVLGGQSAILPMIKPLGEAEDDASYFDADTPALLALNPPISNTVRLLELAQLILA 121 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 WRNKLPDI+ ++ E+PL P SPA+A+WLA+ L ++ID +ETEE+ W DL L + Sbjct: 122 WRNKLPDIVLSIHTETPLVAPASPADAVWLARALVELIDSVETEERDWADLDKLDARDFA 181 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTG 237 WW L FL IAS YW RL ELN SSPV ++ AL+R E + + P+I+AGSTG Sbjct: 182 SWWQLTLAFLGIASAYWPARLEELNRSSPVLHRNALLRTERDRVGHLSDPHPVIVAGSTG 241 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 SIPA + L++ VA P G IVLPGLD +P W+++ + T THPQY L Sbjct: 242 SIPAASELIAAVARLPQGVIVLPGLDKAMPDDQWHSVGGEQPPGMPPEPTARTHPQYGLH 301 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 +LL L + R+DV L ++ RS ++S++ P +D Q F+ Sbjct: 302 RLLGRLGLTRDDVGVLEEAEPDLADRSEILSRALSPAKATDQWTAWRQAFGDNRFQAAFA 361 Query: 358 DVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGIN 412 DVALIEA NEREEAI+IAIALR++L+ ++ALIT DRNLARRV EL RFGI Sbjct: 362 DVALIEAANEREEAIAIAIALRLALERPGADGGESRAALITPDRNLARRVASELARFGIE 421 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D SAG P S T ++L +L A+ + D +AI +L+KHPLA+FG P+ A +ALE Sbjct: 422 ADDSAGTPFSATPQGTLLVLVLEAVLRPGDPVAIVSLLKHPLARFGLPDDGHREATDALE 481 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 +ALRG + DI L L +++ Q ++ H P W+ +++ ++ A +L + I + + Sbjct: 482 AIALRGGTGAIDIAALAPLFDEQVVAQFDDRHPPAWRRSFTDQTRQQARILAEAIAEAVE 541 Query: 533 PLVTY---KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 PL + K + + LS+ +W + T L+ V + L LW E G L+ L S Sbjct: 542 PLAGHVVAKPDGHHFTTRLSLREWAERTGQVLEAVARTDEGDLGPLWANEAGAVLARLLS 601 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 +I+ET + A+ +WI+I+ L E+VKPK + +FI G LESRL + DT+ILGGL Sbjct: 602 EIMETDGQLSADGPQWIEIVAALTASESVKPKSLRHPRVFIFGALESRLQSVDTMILGGL 661 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 NEG WP T NPFLSR M++++ L+ E+ IGQ AHDFEMANGTRHLIY R+LR+ + P Sbjct: 662 NEGSWPGTTTNNPFLSRSMKTEMGLEPPERQIGQLAHDFEMANGTRHLIYCRALRQGSAP 721 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 T+ASRWLQRLL LGG DF + LK RG+ Y + LD Q +RP+P PP + P+T Sbjct: 722 TVASRWLQRLLALGGKDFAETLKARGERYRHFADLLDKGADQAAAQRPQPKPPADLHPKT 781 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 YSFSE+ +L DPY++YARRILKLD + F DP ++RGTL+H I+ + + + K P Sbjct: 782 YSFSEVGRLRRDPYSIYARRILKLDPVEPFNSDPGASERGTLYHAIVEQFVARMPEKLGP 841 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + LM +I D+ F +ENLPPHI ++WR F ++ +F+E + + + K+ A + Sbjct: 842 DTEQLMSEIADTLFAEENLPPHIHVVWRKRFSEVGLAFIEWQRQRDPA--KLVTEARAGV 899 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + I I LTG ADRID+ G DI DYKTG NP A+ L+DPQL+LEAAAL G+F Sbjct: 900 ELGEIDIRLTGIADRIDIRA-GHADIIDYKTGLNPSVSQARSLLDPQLALEAAALTMGAF 958 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCIT-------NDKKKYSADELSEKSLKNLIEIVTLLQ 1002 + NL Y+RL+ + K SA +L+ +S+ L VTLLQ Sbjct: 959 KDVGRLNPDNLIYVRLRPGGRFKADQVNNELTGKGDKAKSALDLAHESIAQLTRFVTLLQ 1018 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 +GE+ ++S L + ++ +YDHLARVAEW Sbjct: 1019 SGERGYVSRLMPAMMNDFSGDYDHLARVAEWSTAE 1053 >gi|15963788|ref|NP_384141.1| hypothetical protein SMc02759 [Sinorhizobium meliloti 1021] gi|15072963|emb|CAC41422.1| Hypothetical protein SMc02759 [Sinorhizobium meliloti 1021] Length = 1059 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 460/1048 (43%), Positives = 639/1048 (60%), Gaps = 16/1048 (1%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 PNVFTI PF R + L NG L FRYDP PL LA VTI+VPT+R+ + LRSEF+ Sbjct: 5 PNVFTIPAGLPFLRTVAERLCNGELTPGFRYDPAQPLALAGVTIFVPTRRSARVLRSEFV 64 Query: 66 EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 ++ G +S ILP+I++LG+ ++ F A++ +L PP+S RL+EL RLIL WRN+L Sbjct: 65 DLLGGRSAILPMIRALGETDDDSGFFDAEVPAILDLAPPLSGTARLIELGRLILAWRNRL 124 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 P ++ D++ ESPL P SPA+AIWLA+NLA++ID IETEE W+ L L ++ +WW L Sbjct: 125 PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242 FLKIA YW ERL EL SSP ++ A+++AE + + G GPIIIAGSTGSIPAT Sbjct: 185 TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVSGPIIIAGSTGSIPAT 244 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300 A L++ V PNG IVLPGLD + A W I + ++ N THPQY +LL Sbjct: 245 AALIAAVKTLPNGTIVLPGLDGSMSDAEWRLIAGETSGSGTSARNPASRTHPQYGFHRLL 304 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + I+ DV L + ++++ RS V+S++ LP D +D+ + F+DVA Sbjct: 305 KRMGIELGDVPALASAADDLDYRSAVLSRALLPADATDVWMEARRSFDAERLLSAFADVA 364 Query: 361 LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 LIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV EL RFGI D SAGI Sbjct: 365 LIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARFGIEADDSAGI 424 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PLS T ++ LL A + +D +A+ L+KHPLA+FG RA + LEL ALRG Sbjct: 425 PLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELAALRGG 484 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 ++ D+ L++++ + QK + H P W++ + +D +A L I + PL + + Sbjct: 485 TDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPLSSNLS 544 Query: 540 NKNSTCGNL----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + +SDW + T L+ +DE L LW E G+ L++L IIET Sbjct: 545 ADPQTGRHRSTVLPLSDWAERTGRALEAAAIDEQGNLGALWASEAGEILATLLRGIIETD 604 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 ++A+ +W DI+ L E VKP+ + +FI G LESRL + D ++LGG+NEG WP Sbjct: 605 GQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T+ +PFLSR M++ + L+ E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRW Sbjct: 665 GQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRW 724 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL LGG LK G YL W R LD +QP +RP+P PP E QPR YSFSE+ Sbjct: 725 LQRLQALGGERLTALLKANGADYLHWMRILDQGERQPLSERPEPKPPAELQPRKYSFSEV 784 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +L DPYAVYARRIL+L+ I F +DP +RG L+H I+ +K + E M Sbjct: 785 TRLRRDPYAVYARRILRLEPIQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGEEAM 844 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++ D F++E LP HID IWR F + +FLE E + + I K F +PA M + Sbjct: 845 IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDLGIGD 904 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I LTG ADR+D L G +DI DYKTG +P + A+ L+DPQL+LEAAAL+AG+F I Sbjct: 905 IRLTGIADRLDRLADGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFRVIGPA 964 Query: 956 KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + +L Y+RLK + + K+ S +L+++SL L ++++ L +G F Sbjct: 965 QPHSLRYVRLKPGSRFAVDTVNNEGAGSKETKSTGQLADESLAELRKLLSALMSGRFGFA 1024 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037 S L + ++ + EYDHLARVAEW Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052 >gi|307310976|ref|ZP_07590621.1| double-strand break repair protein AddB [Sinorhizobium meliloti BL225C] gi|307322013|ref|ZP_07601392.1| double-strand break repair protein AddB [Sinorhizobium meliloti AK83] gi|306892351|gb|EFN23158.1| double-strand break repair protein AddB [Sinorhizobium meliloti AK83] gi|306899656|gb|EFN30283.1| double-strand break repair protein AddB [Sinorhizobium meliloti BL225C] Length = 1059 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 460/1048 (43%), Positives = 639/1048 (60%), Gaps = 16/1048 (1%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 PNVFTI PF R + L NG L FRYDP PL LA VTI+VPT+R+ + LRSEF+ Sbjct: 5 PNVFTIPAGLPFLRTVAERLCNGELTPGFRYDPAQPLALAGVTIFVPTRRSARVLRSEFV 64 Query: 66 EITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 ++ G +S ILP+I++LG+ ++ F A++ +L PP+S RL+EL RLIL WRN+L Sbjct: 65 DLLGGRSAILPMIRALGETDDDSGFFDAEVPAILDLAPPLSGTARLIELGRLILAWRNRL 124 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 P ++ D++ ESPL P SPA+AIWLA+NLA++ID IETEE W+ L L ++ +WW L Sbjct: 125 PQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHALWWQL 184 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPAT 242 FLKIA YW ERL EL SSP ++ A+++AE + + G GPIIIAGSTGSIPAT Sbjct: 185 TLAFLKIARTYWPERLAELKHSSPARHRNAVLKAETQRIAAGKVSGPIIIAGSTGSIPAT 244 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQYSLAKLL 300 A L++ V PNG IVLPGLD + A W I + ++ N THPQY +LL Sbjct: 245 AALIAAVKTLPNGTIVLPGLDGSMSDAEWRLIAGETSGSGTSARNPASRTHPQYGFHRLL 304 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + I+ DV L + ++++ RS V+S++ LP D +D+ + F+DVA Sbjct: 305 KRMGIELGDVPALASAADDLDYRSAVLSRALLPADATDVWMEARRSFDAERLLSAFADVA 364 Query: 361 LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 LIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV EL RFGI D SAGI Sbjct: 365 LIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARFGIEADDSAGI 424 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PLS T ++ LL A + +D +A+ L+KHPLA+FG RA + LEL ALRG Sbjct: 425 PLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELAALRGG 484 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 ++ D+ L++++ + QK + H P W++ + +D +A L I + PL + + Sbjct: 485 TDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPLSSNLS 544 Query: 540 NKNSTCGNL----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + +SDW + T L+ +DE L LW E G+ L++L IIET Sbjct: 545 ADPQTGRHRSTVLPLSDWAERTGRALEAAAIDEQGNLGALWASEAGEILATLLRGIIETD 604 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 ++A+ +W DI+ L E VKP+ + +FI G LESRL + D ++LGG+NEG WP Sbjct: 605 GQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWP 664 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T+ +PFLSR M++ + L+ E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRW Sbjct: 665 GQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRW 724 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 LQRL LGG LK G YL W R LD +QP +RP+P PP E QPR YSFSE+ Sbjct: 725 LQRLQALGGERLTALLKANGADYLHWMRILDQGERQPLSERPEPKPPAELQPRKYSFSEV 784 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +L DPYAVYARRIL+L+ I F +DP +RG L+H I+ +K + E M Sbjct: 785 TRLRRDPYAVYARRILRLEPIQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGEEAM 844 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++ D F++E LP HID IWR F + +FLE E + + I K F +PA M + Sbjct: 845 IRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDLGIGD 904 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I LTG ADR+D L G +DI DYKTG +P + A+ L+DPQL+LEAAAL+AG+F I Sbjct: 905 IRLTGIADRLDRLADGTIDIIDYKTGSSPSPKEARALLDPQLALEAAALRAGAFRVIGPA 964 Query: 956 KVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + +L Y+RLK + + K+ S +L+++SL L ++++ L +G F Sbjct: 965 QPHSLRYVRLKPGSRFAVDTVNNEGARSKETKSTGQLADESLAELRKLLSALMSGRFGFA 1024 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037 S L + ++ + EYDHLARVAEW Sbjct: 1025 SRLIVQKQRDYGGEYDHLARVAEWATAD 1052 >gi|254470632|ref|ZP_05084035.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062] gi|211959774|gb|EEA94971.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062] Length = 1040 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 348/1045 (33%), Positives = 535/1045 (51%), Gaps = 21/1045 (2%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 PN+F+++PS+PF + + ALL+G L+ F+ D +PL LA VTIYVPT+RA + L Sbjct: 3 ATPNIFSVSPSTPFLQATVEALLSGQLIPGFQAD-DDPLALADVTIYVPTRRAARTLPDV 61 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122 + G K+ +LP I LGDV EE+ L P +S ++R L + RL+ W+ + Sbjct: 62 LRKALGAKAALLPKILPLGDVDEEEHILKGHGDGEALPPAMSTMERKLAMTRLVWAWKGQ 121 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L I L + P +P S A+A WLA NL ++D ++TEE W +L +L E + +W Sbjct: 122 LRRQILQLKEDDPARVPASSADAAWLAGNLLTLMDEVQTEEASWAELGSLVPEDHAEYWK 181 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241 + +FLKI + W E L + P + AL+RAEA L +GP+I+AG+TGS PA Sbjct: 182 ITLEFLKIVTDLWPEHLKAIGMMDPKERRSALIRAEAARLRTTPPRGPVIVAGATGSFPA 241 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA LM V + NGA+VLP LD + W + S HPQYSL +LL Sbjct: 242 TAELMKAVLSLENGALVLPALDRGMDAESWEALG-----SPSEPQRVPGHPQYSLRQLLL 296 Query: 302 FLDIKREDVKRLGNV-SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L +KREDV +LG S + R +++++ P +T++ + + F+ Sbjct: 297 ALGVKREDVTQLGAPESEALRLRCEIVNEALRPAETTEEWQNFFTSELAEHRETAFAGTQ 356 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LI A NE EEA+SIA+ LR +++ K +ALI+ DR LARRV ELTR+GI +D +AG P Sbjct: 357 LITARNEAEEALSIALLLREAVE-AGKTTALISPDRTLARRVASELTRWGIIVDDTAGRP 415 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + + D + + L+KHPLA G K + A ALE LRG Sbjct: 416 LEQTPPMVLAILTAKLALQGLDPVNLLALLKHPLAFLGMKAKEVRSAARALERGVLRGPH 475 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLVTYKT 539 + L+ V P + R EED + L+D + Q + PL Sbjct: 476 PRPGLSGLREAVEAAHDQAMEKADRPVARWRKLVEEDWDAINTLLDRLEQALGPLEALLQ 535 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCI 598 N N + D K V + + DE+ L+ E GK L+ + ++E + + Sbjct: 536 NPNEI----PVEDIIKTHVDAVLLLGADENGSTEELFSGENGKALAETLTSLLEADAAGL 591 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A EW + LI G V+ + + +LG +E+RL +D ++LGGLNEG WP+ T Sbjct: 592 CVPANEWPGVFGALITGGAVRSRTPADPRIHLLGPMEARLQRYDLVVLGGLNEGTWPQRT 651 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+L+R M+ + L E+ IG +AHDF G ++ +RS R + PT+ASRWLQR Sbjct: 652 RNDPWLNRPMKGQIGLDPPERKIGTSAHDFLWNLGAPEVVLSRSERVDGSPTVASRWLQR 711 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 ++ L G ++ +G+ Y + LD + KRP+P PP+EA+P S + I+ Sbjct: 712 IVTLAGQSVEQQMRAKGKRYTEMAHVLDRSETPVRPAKRPEPKPPVEARPVQLSVTAIEN 771 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 LI DPY +YAR +LKLD + +P D+G + H+ + ++ + + Sbjct: 772 LIRDPYLIYARHVLKLDEVDPIGGEPGAADKGNIIHDALANFLEDWDGPFDEKAVRALLT 831 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIG 895 F + P I +W F +I+ F+ +E ++ I F+ K+ + Sbjct: 832 EGGRLFRPLDAFPAIRALWWPRFERIAEEFVAYEGEVAPKIYDRFLEEYGKVEMPRPERN 891 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-C 954 LTG ADRID +K + + DYKTG P + + L+ PQL LE A ++ F + Sbjct: 892 FTLTGRADRIDQMKDNTLRVVDYKTGQPPSAKQVEALLSPQLPLEVAMIRRKGFEDLPHD 951 Query: 955 RKVANLFYIRLKQKFKIDCIT-NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 ++++ YI+LK + K+ +A+ELSE++ K L ++V +N + ++S R Sbjct: 952 MPISDMLYIQLKGGSDAVKLESRVPKESTAEELSEEAWKRLEQLVAAYENPRKGYLSRAR 1011 Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038 + ++ + YDHLARV EW D Sbjct: 1012 VLKEREWAASYDHLARVQEWSLGED 1036 >gi|306843519|ref|ZP_07476120.1| double-strand break repair protein AddB [Brucella sp. BO1] gi|306276210|gb|EFM57910.1| double-strand break repair protein AddB [Brucella sp. BO1] Length = 1052 Score = 635 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 381/1044 (36%), Positives = 587/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LRS Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGIFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + LVE S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILVERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDDAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV+ L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVEVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|116249793|ref|YP_765631.1| hypothetical protein RL0027 [Rhizobium leguminosarum bv. viciae 3841] gi|115254441|emb|CAK05515.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1063 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 458/1053 (43%), Positives = 635/1053 (60%), Gaps = 18/1053 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 ++P + TI PF + + L +G L FR++ +PL LA VTIY+PT+RA++ LRS Sbjct: 4 RQQPRILTIPAGLPFLKMLATTLCDGRLTPLFRHEADDPLSLAKVTIYLPTRRAVRVLRS 63 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTAD--LLLSYNLNPPVSNIQRLLELARLILIWR 120 EF+++ G +S ILP+I+ LG+ ++ D L + +L P+SN RLLELARLIL WR Sbjct: 64 EFVDLLGGRSAILPVIRPLGETDDDSGYFDEVLPATIDLAQPLSNTARLLELARLILAWR 123 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 NKLP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y W Sbjct: 124 NKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAW 183 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239 W L A+FL+IAS +W +RL EL SSP ++ A++RAEA L GPIIIAGSTGS+ Sbjct: 184 WQLTAEFLQIASAFWPQRLSELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSV 243 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ VA+ P G IVLPGLD +P W + + +N +HPQY L+ L Sbjct: 244 PATADLIAAVAHLPEGVIVLPGLDLSMPERHWQMVAPEPAPGQHANPASRSHPQYGLSVL 303 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L L + R DV L ++ R+ ++S++ P + + + + FSD+ Sbjct: 304 LKRLKLTRADVTLLDRPEADLERRAEILSRALAPAEATSDWGAWKNDLPAGALTSAFSDI 363 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDI 415 +LIEA NEREEA +IAIALR++L+ + +ALIT DRNLARRV EL+RFGI D Sbjct: 364 SLIEAANEREEATAIAIALRLALERPGQDSESRAALITPDRNLARRVMAELSRFGILADD 423 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 SAG PLS ++L LL A + D +AI +L+KHPLA+FG L A ALEL+A Sbjct: 424 SAGTPLSAMPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERGALISATEALELLA 483 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 LRG DI L+ L+ ++A Q + H P W+ LS E + A L + Q PL Sbjct: 484 LRGGVAEVDISTLEPLLAHQLAEQALDRHAPQWRKALSPEAADAAYDLARRVAQATEPLA 543 Query: 536 ----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 ++ ++S+W + T L+ V +D L +LW E G L++L ++ Sbjct: 544 SALMRHRPEDRGRTTRFTLSEWAERTGRSLEAVAVDPQGNLADLWSNEAGDALAALLGEV 603 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 I+T ++A+ +WIDI+ L G VKP+ LFI GTLE+RL + DTLILGGLNE Sbjct: 604 IDTDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNE 663 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 G WP TA NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+ Sbjct: 664 GTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTV 723 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASRWLQRLL LGG F LK RG +L W +D Q +RP P PPL QP++YS Sbjct: 724 ASRWLQRLLALGGEAFEAELKGRGNRFLQWAALIDRGEAQAPAQRPSPKPPLALQPKSYS 783 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 FSE+ +L DPYA+YARRIL+LD + F +DP +RGTL+H II I++ TP+ Sbjct: 784 FSEVGRLRRDPYAIYARRILRLDPVDPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDA 843 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 M+ ++ F+ E LPPHID +WR F ++ +FLE E + I K + M + Sbjct: 844 AAAMEHVLSELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVRGGMEL 903 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 E I I LTG ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL AG+F Sbjct: 904 EPINIRLTGVADRIDITGPHSADIIDYKTGYNPSPAQARVLLDPQLALEAAALSAGAFRD 963 Query: 952 IDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 L Y+RL+ + + K SA +L+ +S+ L++ V LLQ+ Sbjct: 964 AGSLVPQELLYVRLRPGSRFQVDTVNNESSARSDKAKSAMDLAAESIDQLVKFVGLLQSS 1023 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 E+ F S L +++ + +YDHLARV+EW Sbjct: 1024 ERGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|254486211|ref|ZP_05099416.1| double-strand break repair protein AddB [Roseobacter sp. GAI101] gi|214043080|gb|EEB83718.1| double-strand break repair protein AddB [Roseobacter sp. GAI101] Length = 987 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 279/1048 (26%), Positives = 451/1048 (43%), Gaps = 82/1048 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 K P V+ +AP F +E++ L++ R P+ + + + V T+R + LR Sbjct: 4 PTKTPRVYGLAPGIDFPQELVAGLVS-------RLKGQPPVAMGRIDLVVNTRRMQRRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F +++LP I + ++ L L P ++R LEL L+ + Sbjct: 57 EIF---DAGPASLLPRIHLIDNLD------TLAAGIALPRPSPALRRRLELITLVSKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + P++ A+ L+ +LA +ID ++ E E + L W Sbjct: 108 QAPELAPR-------------ASLYDLSDSLAGLIDEMQGEGVPVEAITDLDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL IA +Y E + + + + + A + PII+AGSTGS Sbjct: 155 ERAKQFLDIAHRYLGESVTRPDP--RARQRQIVAQMIAGWAETPPQHPIIVAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +A LM VA P GA++LPG D +PT++W + E HPQY L Sbjct: 213 SAMLMQAVAGLPQGAVILPGFDFDMPTSVWADMGEA------QEQLSQDHPQYRFRHFLR 266 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ R ++ R+ ++S S P + + T+ K+P++ K + L Sbjct: 267 ALDLARSTIEPWTTCEPPSPERNALVSLSLRPAPVTHVWLTE--GPKLPDLGKATQGLTL 324 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I+A R EA++IA+ LR ++++ + +ALIT DR L+R+V L R+ I D SAG+PL Sbjct: 325 IQAPTPRAEALAIALRLRQAVED-GQTAALITPDRMLSRQVTSALDRWNIVPDDSAGMPL 383 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + + D A+ TL+KHPL G LEL R Sbjct: 384 HLSPPGRFLRHVADLFVRKLDSEALLTLLKHPLTHSGGDRNIHQLNTQRLELQVRRDGLP 443 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + L ++ K + W + + Sbjct: 444 YPDADGVLRLSRKTVSRSKKPDQMDIWATWVGAH-----------------------FAG 480 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIE-TGSCIK 599 + + DW + + + + LW + G+ + + + E + Sbjct: 481 IDVGQDKPLEDWVADHLAVAAAIADGSNPTIESALWLRKSGEEAKKVMANLSENAPYGGE 540 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ D++ L+ ++ + I GT+E+R+ D +I+GGLN+ WP+ Sbjct: 541 MSASDYADLVGALLQQGEIRDSDAPHPDVMIWGTMEARVQGADLIIMGGLNDSTWPEAPP 600 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ IG +AHD++ + + TR++R + T+ SRWL RL Sbjct: 601 PDPWLNRQMRLQAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG + + KRG +L+ R L+ ++ RP P PP A+P S Sbjct: 661 GNLLNGLPEQGGDAAWQTMIKRGDHWLEQARALEAVSRVDPAIRPSPRPPRGARPHALSV 720 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYAVYA+ LKL + + PD RG + H I+ IK Sbjct: 721 TEIKRLIRDPYAVYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTADPKNLTK 780 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890 + + + + E P I+W +I+ F+E+E + QS Sbjct: 781 SHLLETASTVLDAEAPWPAARIMWLTKIERIADWFIENEVRRQSYSSPAAFEKAAKGSHI 840 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 +G LTG+ADRID G + I DYKTG P K QK D QL LEAA ++ G F Sbjct: 841 FPDLGFTLTGYADRIDRTDDGDILIYDYKTGTPPSKLE-QKAFDKQLLLEAAMVEEGGFK 899 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 +I VA YI L K + DE + L L ++T + +Q F + Sbjct: 900 EIGVATVAQAAYIGLGSKPVELAAPLE------DEPPHEVLAKLHALITSYLSDDQGFTA 953 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ + ++ +YDHLAR EW D Sbjct: 954 R-RMVKTTDFAGDYDHLARFGEWDATTD 980 >gi|306842787|ref|ZP_07475428.1| double-strand break repair protein AddB [Brucella sp. BO2] gi|306287060|gb|EFM58568.1| double-strand break repair protein AddB [Brucella sp. BO2] Length = 1052 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 380/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LRS Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDDAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|254718139|ref|ZP_05179950.1| hypothetical protein Bru83_01086 [Brucella sp. 83/13] gi|265983092|ref|ZP_06095827.1| double-strand break repair protein AddB [Brucella sp. 83/13] gi|306837653|ref|ZP_07470522.1| double-strand break repair protein AddB [Brucella sp. NF 2653] gi|264661684|gb|EEZ31945.1| double-strand break repair protein AddB [Brucella sp. 83/13] gi|306407211|gb|EFM63421.1| double-strand break repair protein AddB [Brucella sp. NF 2653] Length = 1052 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 380/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LRS Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRS 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGMDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGARFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLTE 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKGGGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|148559179|ref|YP_001259903.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840] gi|148370436|gb|ABQ60415.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840] Length = 1052 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVVAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDVIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|327192795|gb|EGE59723.1| hypothetical protein RHECNPAF_192003 [Rhizobium etli CNPAF512] Length = 1064 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 461/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P V TI PF + + L +G L FR+D +PL LA VTIY+PT+RA++ LRSEF Sbjct: 6 QPRVLTIPAGLPFLKTLATTLCDGRLTPLFRHDVDDPLSLAGVTIYLPTRRAVRVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL WRNK Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y WW Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241 L A+FL+IAS +W RL EL SSP ++ A++RAEA L GPIIIAGSTGS+PA Sbjct: 186 LTAEFLQIASAFWPARLTELGKSSPARHRNAILRAEAARLSATKPGGPIIIAGSTGSVPA 245 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA L+S VAN G IVLPGLD +P W + + +N +HPQY L+ LL Sbjct: 246 TADLISAVANLREGVIVLPGLDLAMPEGHWQMVAPEPVPGQHTNPASRSHPQYGLSSLLK 305 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + R DV L ++ R+ ++S++ P + + E + F+DV+L Sbjct: 306 RLRLTRADVSTLDRPEADLDRRAEILSRALAPAEATSDWGIWKSELPGRALTSAFNDVSL 365 Query: 362 IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417 IEA NEREEA +IA+ALR++L+ + +ALIT DRNLARRV EL+RFGI D SA Sbjct: 366 IEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PLS T S+L LL A + D +AI +L+KHPLA+FG L+ A ALEL+ALR Sbjct: 426 GTPLSATPQGSLLQLLLEASLRPGDPVAIVSLLKHPLARFGLERNALTFATEALELLALR 485 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT- 536 G DI L+ L+ ++A Q + H P W+ L E + A L + + PL Sbjct: 486 GGVAEVDIGALEPLLTHQLAEQALDRHAPQWRKALPAEAADAAFELAGRVSRATEPLAAA 545 Query: 537 ---YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 ++ + ++S+W + T L+ V D L +LW E G L+SL ++I+ Sbjct: 546 LVRHRPEDRGKTASFTLSEWAQRTGRALEAVAADPQGNLADLWSNEAGDALASLLGEVID 605 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 T ++A+ +WIDI L G VKP+ LFI GTLE+RL + DTLILGGLNEG Sbjct: 606 TDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGS 665 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP +A NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS Sbjct: 666 WPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 RWLQRLL LGG F LK RG +L W +D Q +RP P PPL QP++YSFS Sbjct: 726 RWLQRLLALGGEAFEAELKGRGARFLQWAGLVDRGETQAPAQRPSPKPPLALQPQSYSFS 785 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ +L DPY +YARRIL+LD + F +DP +RGTL+H II I+ TPE Sbjct: 786 EVGRLRRDPYTIYARRILRLDPVDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAA 845 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 M+ I+ F+ E LPPHID +WR F +++ +FLE E + +I + + + +E+ Sbjct: 846 AMELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELEA 905 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 I I L G ADRID++ DI DYKTG NP A+ L+DPQL+LEAAAL+AG+F Sbjct: 906 INIRLNGVADRIDMIGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAG 965 Query: 954 CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 +L Y+RL+ + + K SA +L+E+S+ L++ V+LLQ+GE+ Sbjct: 966 SLTPQDLLYVRLRPGNRFQVDMVNNENAARSDKAKSAIDLAEESVDQLVKFVSLLQSGEK 1025 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L +++ + +YDHLARV+EW Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|260169509|ref|ZP_05756320.1| double-strand break repair protein AddB [Brucella sp. F5/99] gi|261759037|ref|ZP_06002746.1| double-strand break repair protein AddB [Brucella sp. F5/99] gi|261739021|gb|EEY27017.1| double-strand break repair protein AddB [Brucella sp. F5/99] Length = 1052 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ + S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDANDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEVLENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|86355695|ref|YP_467587.1| hypothetical protein RHE_CH00027 [Rhizobium etli CFN 42] gi|86279797|gb|ABC88860.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 1064 Score = 632 bits (1629), Expect = e-178, Method: Composition-based stats. Identities = 461/1056 (43%), Positives = 639/1056 (60%), Gaps = 19/1056 (1%) Query: 1 MHNK-KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQE 59 M ++ +P + TI PF + + L +G L FR++ +PL LA VTIY+PT+RA++ Sbjct: 1 MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTIYLPTRRAVRV 60 Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLIL 117 LRSEF+++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL Sbjct: 61 LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLLELARLIL 120 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177 WRNKLP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y Sbjct: 121 AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWTELSKLDTGDY 180 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGST 236 WW L A+FL+IAS +W ERL EL SSP ++ A++RAEA + GPIIIAGST Sbjct: 181 AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGST 240 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 GS+PAT L++ VAN P G IVLPGLD +P W + + SN +HPQY L Sbjct: 241 GSVPATTDLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL 300 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + LL L + R D+ L ++ R+ ++S++ P + + + F Sbjct: 301 SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGALPEGALDSAF 360 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGIN 412 +DV+LIEA NEREEA +IAIALR++L+ + +ALIT DRNLARRV EL+RFGI Sbjct: 361 ADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALITPDRNLARRVMAELSRFGIL 420 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D SAG PLS T ++L LL A + D +AI +L+KHPLA+FG L A ALE Sbjct: 421 ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE 480 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 L+ALRG DI L+ L+ ++ Q + H P W+ L E A L + + Sbjct: 481 LLALRGGVAEVDISALELLLTHQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQ 540 Query: 533 PLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 PL ++ + ++S+W + T L+ V D H L +LW E G L+SL Sbjct: 541 PLASALVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL 600 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++I+T I+A+ +WIDI+ L G VKP+ LFI GTLE+RL + DTLILGG Sbjct: 601 GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARLQSVDTLILGG 660 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNEG WP +A NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + Sbjct: 661 LNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST 720 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 PT+ASRWLQRLL LGG F L+ RG YL W +D Q +RP P PPL QP+ Sbjct: 721 PTVASRWLQRLLALGGEAFEAALRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPK 780 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 +YSFSE+ +L DPYA+YARRIL+LD + F +DP +RGTL+H II I++ T Sbjct: 781 SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT 840 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 PE M+ I+ F+ E LPPHID +WR F +++ +FLE E + +I + + Sbjct: 841 PEAAAAMEWILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG 900 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 + +E+I I L G ADRID+ G DI DYKTG NP A+ L+DPQL+LEAAAL AG+ Sbjct: 901 VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA 960 Query: 949 FSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 F +L Y+RL+ + + K SA +L+ S+ LI+ V+LL Sbjct: 961 FRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAGDSVDQLIKFVSLL 1020 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 Q+GE+ F S L +++ + +YDHLARV+EW Sbjct: 1021 QSGEKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|190889667|ref|YP_001976209.1| hypothetical protein RHECIAT_CH0000028 [Rhizobium etli CIAT 652] gi|190694946|gb|ACE89031.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 1064 Score = 632 bits (1629), Expect = e-178, Method: Composition-based stats. Identities = 461/1051 (43%), Positives = 638/1051 (60%), Gaps = 18/1051 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P + TI+ PF + + L +G L FR+D +PL LA VTIY+PT+RA++ LRSEF Sbjct: 6 QPRILTISAGLPFLKTLATTLCDGRLTPLFRHDVDDPLSLARVTIYLPTRRAVRVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P+SN R LELARLIL WRNK Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARQLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y WW Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241 L A+FL+IAS +W RL EL SSP ++ A++RAEA L GPIIIAGSTGS+PA Sbjct: 186 LTAEFLQIASAFWPARLAELGKSSPARHRNAILRAEAARLSATKPGGPIIIAGSTGSVPA 245 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA L+S VAN G IVLPGLD +P W + + +N +HPQY L+ LL Sbjct: 246 TADLISAVANLREGVIVLPGLDLAMPEEHWQMVAPEPVPGQHANPASRSHPQYGLSSLLK 305 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + R DV L ++ R+ ++S++ P + + E + F+DV+L Sbjct: 306 RLRLTRADVSTLDRPDADLDRRAEILSRALAPAEATSDWGIWKSELPGGALTSAFNDVSL 365 Query: 362 IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417 IEA NEREEA +IA+ALR++L+ + +ALIT DRNLARRV EL+RFGI D SA Sbjct: 366 IEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMAELSRFGILADDSA 425 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PLS T S+L LL A + D +AI +L+KHPLA+FG L+ A ALEL+ALR Sbjct: 426 GTPLSATPQGSLLQLLLEASLRPGDPVAIVSLLKHPLARFGLERNALTFATEALELLALR 485 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT- 536 G DI L+ L+ ++A Q + H P W+ L E + A L + + PL Sbjct: 486 GGVAEVDIGALEPLLTHQLAEQALDRHAPQWRKALPTEAADAAFELAGRVSRATEPLAAA 545 Query: 537 ---YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 ++ + ++S+W + T L+ V D L +LW E G L+SL ++I+ Sbjct: 546 LVRHRPEDRGKTASFTLSEWAQRTGRALEAVAADPQGNLADLWSNEAGDALASLLGEVID 605 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 T ++A+ +WIDI L G VKP+ LFI GTLE+RL + DTLILGGLNEG Sbjct: 606 TDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGS 665 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP +A NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS Sbjct: 666 WPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 RWLQRLL LGG F LK RG +L W +D Q +RP P PPL QP++YSFS Sbjct: 726 RWLQRLLALGGEAFEAELKGRGARFLQWAGLVDRGGTQAPAQRPSPKPPLALQPQSYSFS 785 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ +L DPYA+YARRIL+LD I F +DP +RGTL+H II I+ TPE Sbjct: 786 EVGRLRRDPYAIYARRILRLDPIDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAA 845 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 M+ I+ F+ E LPPHID +WR F +++ +FLE E + +I + + + +E+ Sbjct: 846 AMELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELET 905 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 I I L G ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL+AG+F Sbjct: 906 INIRLNGVADRIDITGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAG 965 Query: 954 CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 +L Y+RL+ + + K SA +L+E+S+ L++ V+LLQ+GE+ Sbjct: 966 SLTPQDLLYVRLRPGNRFQVDMVNNENAARSDKAKSAIDLAEESVDQLVKFVSLLQSGEK 1025 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L +++ + +YDHLARV+EW Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|163844119|ref|YP_001628523.1| double-strand break repair protein AddB [Brucella suis ATCC 23445] gi|163674842|gb|ABY38953.1| double-strand break repair protein AddB [Brucella suis ATCC 23445] Length = 1052 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 377/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P TA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PVTAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F + +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGNPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSVAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|254500632|ref|ZP_05112783.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11] gi|222436703|gb|EEE43382.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11] Length = 1046 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 344/1050 (32%), Positives = 534/1050 (50%), Gaps = 22/1050 (2%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 +P +FTI P+ F + L++G LV FR +PLLL+S T+Y+PT+RA + L Sbjct: 3 DQPRLFTIPPAVSFLETFVDKLVDGQLVPGFRP-LDDPLLLSSATLYLPTRRAARLLPDL 61 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122 F G + +LPII+ +GD E+ + L P + I R L + RL++ W+ Sbjct: 62 FQIALGGRPVLLPIIRPVGDADEDIQSLSSGPDLEPLPPAMPLIDRHLAMTRLVMAWKGA 121 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L L + PL LP S A+A WLA +L ++D +ETEE W +L L + + +W Sbjct: 122 LRREALALRSDEPLGLPASTADAAWLAGDLLTLMDEVETEEADWSELAGLVPDDHARYWQ 181 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIPA 241 + DFLKI + W L EL P + AL+R EA+ KGP+I+AG TGS+PA Sbjct: 182 ITLDFLKIVQEAWPAHLAELGKMDPKARRSALIRREAQRIAATPPKGPVIVAGVTGSVPA 241 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS------SNTTYSTHPQYS 295 TA L+ VA G IVLPGLD + W + ++ T + S+HPQYS Sbjct: 242 TAELLKAVAGLEQGVIVLPGLDLDLDDRSWEALGQRFVTGTRHGSDTKTPPPLSSHPQYS 301 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L +LLD L + R DV+ L + + + R ++S++ P DTSD + + I Sbjct: 302 LKQLLDRLGVTRADVRALDDPGDILSQRQRLVSEALRPADTSDGWTSYLDATPIEVRSAA 361 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 ++V+L+ A NE +EA+S+AIALR +++ + +ALI+ DR L RRV EL R+ I D Sbjct: 362 LNNVSLMTARNEADEALSLAIALREAIEL-GETAALISPDRMLTRRVAAELARWNIQADD 420 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 SAG PL T + + + + + L+KHPLA+ G P K + A ALE Sbjct: 421 SAGRPLDQTAPAILTILAAKLALNGCEPIDLLALLKHPLARLGLPIKDIRAAARALERGV 480 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 +RG + L V N H P W+ E D ++ L + + PL Sbjct: 481 IRGERPRPGTDGLIMAVE-ACRAAAENAHTPRWKKVH-EGDWDVIADLAARLQSALAPLE 538 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET- 594 + + + + V +Q + DE L+ E G+ L++ +S ++E Sbjct: 539 NMAGD----RDPVPVEHLVQAHVDVMQAISADETGAADELYAAEAGEALAAFWSGLLEAE 594 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 S + EW +++ L+ G+ V+ ++ + + ILG +E+RL FD +ILGGLNEG W Sbjct: 595 ASGLAVPPHEWPSVLSALMSGDAVRRRLPRDPRVQILGPMEARLQAFDFVILGGLNEGTW 654 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P+ T +P+L+R M+ D+ L+ E+ +G AAHDF G + ++ +R+ R + PT+ASR Sbjct: 655 PQRTRNDPWLNRPMKRDMGLEPPERRLGAAAHDFAQGMGAKRVLLSRAARADGAPTVASR 714 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYSFS 773 WLQRL L G + ++ RG Y LD RP P PPL A+P+T S + Sbjct: 715 WLQRLTTLAGPEIAAGMEARGNRYSQLAALLDRQAGDVRPADRPAPKPPLGARPKTLSVT 774 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 EI++L+ DPYA++AR L+L + +P D+G L H+ + E + Sbjct: 775 EIERLVRDPYAIFARHSLELQPVDPIGGEPGAADKGNLIHDALAEFLSTWTGPFDETAVT 834 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI 891 + +I + FE + P I +W F +I+ F+ E K +EK F+ I ++ + Sbjct: 835 ALLEIGEELFEPLDAFPAIRALWWPRFQRIAEGFVAFEAKRSLHVEKRFLEIGGGVELKL 894 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 + L G ADRIDL+ SG + + DYKTG P ++ L+ PQL LEAA ++ G F Sbjct: 895 PGLDFRLRGRADRIDLMSSGSLSVIDYKTGQVPSQKQVDALLSPQLPLEAAMIQRGGFKD 954 Query: 952 IDCR-KVANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + V L Y++LK + + + K + +EL E + + L +++ E ++ Sbjct: 955 VPAGDPVGELLYLQLKGGTDAVLEVGRNPKDAALEELIEDAWQRLEQLIAHYAKEETGYL 1014 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039 S R+ + I YDHLAR EW + Sbjct: 1015 SRARVMQGRQIDGPYDHLARAQEWALGGED 1044 >gi|62290944|ref|YP_222737.1| hypothetical protein BruAb1_2077 [Brucella abortus bv. 1 str. 9-941] gi|82700855|ref|YP_415429.1| hypothetical protein BAB1_2104 [Brucella melitensis biovar Abortus 2308] gi|189025156|ref|YP_001935924.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19] gi|254690235|ref|ZP_05153489.1| hypothetical protein Babob68_08702 [Brucella abortus bv. 6 str. 870] gi|254696351|ref|ZP_05158179.1| hypothetical protein Babob28_01193 [Brucella abortus bv. 2 str. 86/8/59] gi|254731266|ref|ZP_05189844.1| hypothetical protein Babob42_08720 [Brucella abortus bv. 4 str. 292] gi|256258488|ref|ZP_05464024.1| hypothetical protein Babob9C_14307 [Brucella abortus bv. 9 str. C68] gi|260546207|ref|ZP_05821947.1| double-strand break repair protein AddB [Brucella abortus NCTC 8038] gi|260755776|ref|ZP_05868124.1| double-strand break repair protein AddB [Brucella abortus bv. 6 str. 870] gi|260758999|ref|ZP_05871347.1| double-strand break repair protein AddB [Brucella abortus bv. 4 str. 292] gi|260760723|ref|ZP_05873066.1| double-strand break repair protein AddB [Brucella abortus bv. 2 str. 86/8/59] gi|260884800|ref|ZP_05896414.1| double-strand break repair protein AddB [Brucella abortus bv. 9 str. C68] gi|297247329|ref|ZP_06931047.1| double-strand break repair protein AddB [Brucella abortus bv. 5 str. B3196] gi|62197076|gb|AAX75376.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616956|emb|CAJ12060.1| conserved hypothetical protein [Brucella melitensis biovar Abortus 2308] gi|189020728|gb|ACD73450.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19] gi|260096314|gb|EEW80190.1| double-strand break repair protein AddB [Brucella abortus NCTC 8038] gi|260669317|gb|EEX56257.1| double-strand break repair protein AddB [Brucella abortus bv. 4 str. 292] gi|260671155|gb|EEX57976.1| double-strand break repair protein AddB [Brucella abortus bv. 2 str. 86/8/59] gi|260675884|gb|EEX62705.1| double-strand break repair protein AddB [Brucella abortus bv. 6 str. 870] gi|260874328|gb|EEX81397.1| double-strand break repair protein AddB [Brucella abortus bv. 9 str. C68] gi|297174498|gb|EFH33845.1| double-strand break repair protein AddB [Brucella abortus bv. 5 str. B3196] Length = 1052 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRNHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|45505283|gb|AAS67013.1| AddB [Rhizobium etli] Length = 1064 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 461/1056 (43%), Positives = 639/1056 (60%), Gaps = 19/1056 (1%) Query: 1 MHNK-KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQE 59 M ++ +P + TI PF + + L +G L FR++ +PL LA VTIY+PT+RA++ Sbjct: 1 MADRHQPRILTIPAGLPFLKTLATTLCDGRLTPLFRHESDDPLSLARVTIYLPTRRAVRV 60 Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLIL 117 LRSEF+++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL Sbjct: 61 LRSEFVDLLGGRSAILPVIRPLGETDDDSGYFEEALPATIDLAQPLSNTARLLELARLIL 120 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177 WRNKLP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y Sbjct: 121 AWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWTELSKLDTGDY 180 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGST 236 WW L A+FL+IAS +W ERL EL SSP ++ A++RAEA + GPIIIAGST Sbjct: 181 AAWWQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEATRISATKPAGPIIIAGST 240 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 GS+PAT L++ VAN P G IVLPGLD +P W + + SN +HPQY L Sbjct: 241 GSVPATTDLIAAVANLPEGVIVLPGLDLSMPERHWQMVAPEPLPGQHSNPASRSHPQYGL 300 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + LL L + R D+ L ++ R+ ++S++ P + + + F Sbjct: 301 SSLLKRLRLTRGDISLLDRPEADLNRRAEILSRALAPAEATSDWGAWKGALPEGALDSAF 360 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGIN 412 +DV+LIEA NEREEA +IAIALR++L+ + +ALIT DRNLARRV EL+RFGI Sbjct: 361 ADVSLIEAANEREEATAIAIALRLALERPGRDGESRAALITPDRNLARRVMAELSRFGIL 420 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D SAG PLS T ++L LL A + D +AI +L+KHPLA+FG L A ALE Sbjct: 421 ADDSAGTPLSATPQGTLLQLLLEAALRPGDPVAIVSLLKHPLARFGLERDALISATEALE 480 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 L+ALRG DI L+ L+ ++ Q + H P W+ L E A L + + Sbjct: 481 LLALRGGVAEVDISALELLLTHQLGEQVLDRHAPQWRKALPAEAANAASELARRVTRATQ 540 Query: 533 PLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 PL ++ + ++S+W + T L+ V D H L +LW E G L+SL Sbjct: 541 PLASALVRHRPEERGKTARFTLSEWAERTGRSLEAVAADPHGNLADLWSHEAGDALASLL 600 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++I+T I+A+ +WIDI+ L G VKP+ LFI GTLE+RL + DTLILGG Sbjct: 601 GEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIFGTLEARLQSVDTLILGG 660 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNEG WP +A NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + Sbjct: 661 LNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGST 720 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 PT+ASRWLQRLL LGG F L+ RG YL W +D Q +RP P PPL QP+ Sbjct: 721 PTVASRWLQRLLALGGEAFEAALRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPK 780 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 +YSFSE+ +L DPYA+YARRIL+LD + F +DP +RGTL+H II I++ T Sbjct: 781 SYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHTIIDRFIREAHVAGT 840 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 PE M+ I+ F+ E LPPHID +WR F +++ +FLE E + +I + + Sbjct: 841 PEAAAAMEWILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGG 900 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 + +E+I I L G ADRID+ G DI DYKTG NP A+ L+DPQL+LEAAAL AG+ Sbjct: 901 VELEAINIRLNGVADRIDITGPGAADIIDYKTGYNPSPAQARALLDPQLALEAAALSAGA 960 Query: 949 FSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 F +L Y+RL+ + + K SA +L+ S+ LI+ V+LL Sbjct: 961 FRDAGSLIPQDLLYVRLRPGRRFQVDTVNNENSARSDKAKSAMDLAGVSVDQLIKFVSLL 1020 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 Q+GE+ F S L +++ + +YDHLARV+EW Sbjct: 1021 QSGEKGFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|254707380|ref|ZP_05169208.1| hypothetical protein BpinM_10505 [Brucella pinnipedialis M163/99/10] gi|254709078|ref|ZP_05170889.1| hypothetical protein BpinB_02192 [Brucella pinnipedialis B2/94] gi|254713495|ref|ZP_05175306.1| hypothetical protein BcetM6_09104 [Brucella ceti M644/93/1] gi|254716149|ref|ZP_05177960.1| hypothetical protein BcetM_06896 [Brucella ceti M13/05/1] gi|256030603|ref|ZP_05444217.1| hypothetical protein BpinM2_08117 [Brucella pinnipedialis M292/94/1] gi|256158599|ref|ZP_05456489.1| hypothetical protein BcetM4_07036 [Brucella ceti M490/95/1] gi|256254010|ref|ZP_05459546.1| hypothetical protein BcetB_06878 [Brucella ceti B1/94] gi|261217922|ref|ZP_05932203.1| double-strand break repair protein AddB [Brucella ceti M13/05/1] gi|261221151|ref|ZP_05935432.1| double-strand break repair protein AddB [Brucella ceti B1/94] gi|261314863|ref|ZP_05954060.1| double-strand break repair protein AddB [Brucella pinnipedialis M163/99/10] gi|261316579|ref|ZP_05955776.1| double-strand break repair protein AddB [Brucella pinnipedialis B2/94] gi|261321228|ref|ZP_05960425.1| double-strand break repair protein AddB [Brucella ceti M644/93/1] gi|265987651|ref|ZP_06100208.1| double-strand break repair protein AddB [Brucella pinnipedialis M292/94/1] gi|265997111|ref|ZP_06109668.1| double-strand break repair protein AddB [Brucella ceti M490/95/1] gi|260919735|gb|EEX86388.1| double-strand break repair protein AddB [Brucella ceti B1/94] gi|260923011|gb|EEX89579.1| double-strand break repair protein AddB [Brucella ceti M13/05/1] gi|261293918|gb|EEX97414.1| double-strand break repair protein AddB [Brucella ceti M644/93/1] gi|261295802|gb|EEX99298.1| double-strand break repair protein AddB [Brucella pinnipedialis B2/94] gi|261303889|gb|EEY07386.1| double-strand break repair protein AddB [Brucella pinnipedialis M163/99/10] gi|262551579|gb|EEZ07569.1| double-strand break repair protein AddB [Brucella ceti M490/95/1] gi|264659848|gb|EEZ30109.1| double-strand break repair protein AddB [Brucella pinnipedialis M292/94/1] Length = 1052 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEVLENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|256060065|ref|ZP_05450247.1| hypothetical protein Bneo5_06871 [Brucella neotomae 5K33] gi|261324042|ref|ZP_05963239.1| double-strand break repair protein AddB [Brucella neotomae 5K33] gi|261300022|gb|EEY03519.1| double-strand break repair protein AddB [Brucella neotomae 5K33] Length = 1052 Score = 631 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDHDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGRFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|227823894|ref|YP_002827867.1| double-strand break repair protein AddB [Sinorhizobium fredii NGR234] gi|227342896|gb|ACP27114.1| double-strand break repair protein AddB [Sinorhizobium fredii NGR234] Length = 1059 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 452/1052 (42%), Positives = 642/1052 (61%), Gaps = 15/1052 (1%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M + NVFTI PF + + LL G L +F+Y+ +PL LA VTI+VPT+RA + L Sbjct: 1 MPGRASNVFTIPAGLPFLKTLAEKLLGGVLTPDFQYESADPLALAGVTIFVPTRRAARVL 60 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILI 118 RSEF+++ G +S ILP+I+ LG+ ++ F A++ +L PP+S QRL+EL RLIL Sbjct: 61 RSEFVDLLGGRSAILPVIRPLGETDDDSGFFDAEMPAILDLAPPLSGTQRLIELGRLILA 120 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 WRN+LP ++ D++ ESPL P SPA+AIWLA+NLA++ID IETEE W+ L L ++ Sbjct: 121 WRNRLPQVVLDIHAESPLIAPASPADAIWLARNLAELIDAIETEELDWDALDGLDGGEHA 180 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTG 237 +WW L FLKIA YW ERL EL SSP ++ A+++AE + + G GPIIIAGSTG Sbjct: 181 LWWQLTLAFLKIARIYWPERLDELKHSSPARHRNAMLKAETQRIAAGKVSGPIIIAGSTG 240 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-STHPQYSL 296 SIPATA L++ V PNG IVLPGLD + W I E + + + THPQY Sbjct: 241 SIPATAALIAAVKTLPNGTIVLPGLDLVMSETEWELIAEVAASGPPARGPASRTHPQYGF 300 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + L + I+R DV LG++ +++ R V+S++ LP + +D + + F Sbjct: 301 HRFLKRMRIERLDVPVLGSLDDDLGYRGAVLSRALLPAEATDGWTEARGGFEPEKLLAAF 360 Query: 357 SDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDI 415 +DVALIEA NEREEA +IAIALR++L+ + + ++ALIT DR LARRV EL RFGI D Sbjct: 361 ADVALIEAANEREEAAAIAIALRLALEGDEESQAALITPDRGLARRVGAELARFGIEADD 420 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 SAG+PLS T ++ L+ A + +D +A+ L+KHPLA+FG RA + LEL+A Sbjct: 421 SAGVPLSATSAGALARLLIEATLRPDDPVALVALLKHPLARFGQTAVDTRRAADVLELLA 480 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL- 534 LRG + DI L++++ +A Q+ H W+ + + D A L I + PL Sbjct: 481 LRGGTDLSDISGLEAVLDKALARQRTERHPRPWRRGIDQGDIARARALAGRISTAVEPLT 540 Query: 535 ---VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 L+++DW + T L+ V +DE L LW E G+ L++L I Sbjct: 541 STNAGGSEGGRHHSMVLTLADWAERTGRALEAVAIDERGSLGELWGSEAGEALATLLRSI 600 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 IET ++A+ +W DI+ L E VKP+ + +FI G LESRL + D ++LGGLNE Sbjct: 601 IETDGQMEADGRQWCDIVVALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGLNE 660 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 G WP T+ +PFLSR M+S + L+ E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ Sbjct: 661 GTWPGQTSNDPFLSRTMKSGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTV 720 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASRW+QRL LGG + LK G YL W R LD +QP +RP+P PP+E QPR YS Sbjct: 721 ASRWVQRLQALGGKTLTEQLKANGASYLHWMRILDGGERQPLSERPQPKPPVELQPRKYS 780 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 FSE+ +L DPY++YARRIL+L+ I F +DP +RG L+H I+ +K + + + Sbjct: 781 FSEVTKLRRDPYSIYARRILRLEPIDSFNRDPGAAERGLLYHRIVDRFVKGGFDPASGDG 840 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 M ++I F++E LP HID IWR F ++ +FL E + + +I + F PA M + Sbjct: 841 EEAMVRLIREAFDEEQLPAHIDTIWRPRFEAVARAFLSWERERRHTIVRSFTEAPAAMDV 900 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 I LTG ADR+D L +G VDI DYKTG +P + A+ L+DPQL+LEAAALKAG+F Sbjct: 901 GVSDIRLTGIADRLDRLANGTVDIIDYKTGSSPSAKEARALLDPQLALEAAALKAGAFGT 960 Query: 952 IDCRKVANLFYIRLKQKFKI------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 I + L Y+RLK + + + ++ +A++L+E+SL L +++ L +G+ Sbjct: 961 IGPARPHALRYVRLKPGSRFAVDTVNNENSKSRETKTAEQLAEESLAELRKLLAALTSGK 1020 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L + ++ + EYDHLARVAEW Sbjct: 1021 YGFASRLIVQKERDYGGEYDHLARVAEWATAD 1052 >gi|225853530|ref|YP_002733763.1| double-strand break repair protein AddB [Brucella melitensis ATCC 23457] gi|256262986|ref|ZP_05465518.1| double-strand break repair protein AddB [Brucella melitensis bv. 2 str. 63/9] gi|225641895|gb|ACO01809.1| double-strand break repair protein AddB [Brucella melitensis ATCC 23457] gi|263092859|gb|EEZ17034.1| double-strand break repair protein AddB [Brucella melitensis bv. 2 str. 63/9] gi|326410099|gb|ADZ67164.1| double-strand break repair protein AddB [Brucella melitensis M28] gi|326539816|gb|ADZ88031.1| double-strand break repair protein AddB [Brucella melitensis M5-90] Length = 1052 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 377/1044 (36%), Positives = 583/1044 (55%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA +++ +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMNQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCKSLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F + P I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDPPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|23502950|ref|NP_699077.1| hypothetical protein BR2102 [Brucella suis 1330] gi|254700732|ref|ZP_05162560.1| hypothetical protein Bsuib55_07727 [Brucella suis bv. 5 str. 513] gi|256370500|ref|YP_003108011.1| double-strand break repair protein AddB [Brucella microti CCM 4915] gi|261751244|ref|ZP_05994953.1| double-strand break repair protein AddB [Brucella suis bv. 5 str. 513] gi|23348985|gb|AAN30992.1| conserved hypothetical protein [Brucella suis 1330] gi|256000663|gb|ACU49062.1| double-strand break repair protein AddB [Brucella microti CCM 4915] gi|261740997|gb|EEY28923.1| double-strand break repair protein AddB [Brucella suis bv. 5 str. 513] Length = 1052 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|17988307|ref|NP_540941.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. 16M] gi|256045705|ref|ZP_05448583.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. Rev.1] gi|256112425|ref|ZP_05453346.1| putative cytoplasmic protein [Brucella melitensis bv. 3 str. Ether] gi|260563007|ref|ZP_05833493.1| double-strand break repair protein AddB [Brucella melitensis bv. 1 str. 16M] gi|265992126|ref|ZP_06104683.1| double-strand break repair protein AddB [Brucella melitensis bv. 1 str. Rev.1] gi|265993863|ref|ZP_06106420.1| double-strand break repair protein AddB [Brucella melitensis bv. 3 str. Ether] gi|17984080|gb|AAL53205.1| hypothetical cytosolic protein [Brucella melitensis bv. 1 str. 16M] gi|260153023|gb|EEW88115.1| double-strand break repair protein AddB [Brucella melitensis bv. 1 str. 16M] gi|262764844|gb|EEZ10765.1| double-strand break repair protein AddB [Brucella melitensis bv. 3 str. Ether] gi|263003192|gb|EEZ15485.1| double-strand break repair protein AddB [Brucella melitensis bv. 1 str. Rev.1] Length = 1052 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA +++ +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMNQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|237816449|ref|ZP_04595442.1| double-strand break repair protein AddB [Brucella abortus str. 2308 A] gi|237788516|gb|EEP62731.1| double-strand break repair protein AddB [Brucella abortus str. 2308 A] Length = 1058 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 14 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 73 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 74 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 133 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 134 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 193 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 194 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRNHPPAGPVIAAGSTGSI 253 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 254 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 308 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 309 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 368 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 369 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 428 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 429 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 488 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 489 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 548 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 549 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 604 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 605 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 664 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 665 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 724 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 725 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 784 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 785 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 844 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 845 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 904 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 905 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 964 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 965 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1024 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1025 ALPFRETDLTGDYDHLARVLEWSA 1048 >gi|254705104|ref|ZP_05166932.1| hypothetical protein Bsuib36_14511 [Brucella suis bv. 3 str. 686] gi|261755809|ref|ZP_05999518.1| double-strand break repair protein AddB [Brucella suis bv. 3 str. 686] gi|261745562|gb|EEY33488.1| double-strand break repair protein AddB [Brucella suis bv. 3 str. 686] Length = 1052 Score = 630 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ D+ + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMVRDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|161620014|ref|YP_001593901.1| double-strand break repair protein AddB [Brucella canis ATCC 23365] gi|161336825|gb|ABX63130.1| double-strand break repair protein AddB [Brucella canis ATCC 23365] Length = 1052 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD I A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDIDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ D+ + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGIDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|260567426|ref|ZP_05837896.1| double-strand break repair protein AddB [Brucella suis bv. 4 str. 40] gi|260156944|gb|EEW92024.1| double-strand break repair protein AddB [Brucella suis bv. 4 str. 40] Length = 1052 Score = 629 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 378/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ D+ + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDDTGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGIDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|261215052|ref|ZP_05929333.1| double-strand break repair protein AddB [Brucella abortus bv. 3 str. Tulya] gi|260916659|gb|EEX83520.1| double-strand break repair protein AddB [Brucella abortus bv. 3 str. Tulya] Length = 1052 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|254694723|ref|ZP_05156551.1| hypothetical protein Babob3T_08698 [Brucella abortus bv. 3 str. Tulya] Length = 1058 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 584/1044 (55%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 14 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 73 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 74 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 133 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 134 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 193 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 194 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 253 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 254 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 308 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 309 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 368 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 369 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 428 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L +F D +A+ LVKHPL + G A LELVA R Sbjct: 429 GRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 488 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G I+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 489 GGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 548 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 549 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 604 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 605 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 664 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ SRWLQ Sbjct: 665 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPSRWLQ 724 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 725 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 784 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 785 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 844 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 845 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 904 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 905 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 964 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 965 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1024 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1025 ALPFRETDLTGDYDHLARVLEWSA 1048 >gi|241206970|ref|YP_002978066.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860860|gb|ACS58527.1| double-strand break repair protein AddB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1064 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 461/1051 (43%), Positives = 635/1051 (60%), Gaps = 18/1051 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P + TI F + + L +G L FR+D +PL LA VTIY+PT+RA++ LRSEF Sbjct: 6 QPRIVTIPAGLSFLKTLATTLCDGRLTPIFRHDADDPLSLAKVTIYLPTRRAVRVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL WRNK Sbjct: 66 VDLLGGRSAILPMIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y WW Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELSKLDTGDYAAWWQ 185 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIPA 241 L A+FL+IAS +W ERL EL SSP ++ A++RAEA L GPIIIAGSTGS+PA Sbjct: 186 LTAEFLQIASAFWPERLAELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSVPA 245 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA L++ VA+ P G IVLPGLD +P W + + +N +HPQY L+ LL Sbjct: 246 TADLIAAVAHLPEGVIVLPGLDLSMPERHWQMVAPEPAPGQHANPASRSHPQYGLSSLLK 305 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + R D+ L ++ R+ ++S++ P + + + + FSDV+L Sbjct: 306 RLKLTRADLTLLDRPEADLERRAEILSQALAPAEATSDWGAWKTDLPAGALSSSFSDVSL 365 Query: 362 IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417 IEA NEREEA +IAIALR++L+ + +ALIT DRNLARRV EL+RFGI D SA Sbjct: 366 IEAANEREEATAIAIALRLALERPGQDSESRAALITPDRNLARRVMAELSRFGILADDSA 425 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PLS ++L LL A + D +AI +L+KHPLA+FG L A ALEL+ALR Sbjct: 426 GTPLSAMPQGTLLQLLLEAALRPGDPVAIISLLKHPLARFGLERGALISATEALELLALR 485 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G DI L+ L+ ++A Q + H P W+ LS E + A L + Q PL + Sbjct: 486 GGVAEVDISTLEPLLAHQLAEQALDRHAPQWRKALSPEAADAAYDLARRVTQATEPLASA 545 Query: 538 KTNKNS----TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + ++S+W K T L+ V +D H L +LW E G L++L ++I+ Sbjct: 546 LMRERPEDRGRTARFTLSEWAKRTGRSLEAVAVDPHGNLADLWSNEAGDALAALLGEVID 605 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 T ++A+ +WIDI+ L G VKP+ LFI GTLE+RL + DTLILGGLNEG Sbjct: 606 TDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGT 665 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP TA NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+AS Sbjct: 666 WPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVAS 725 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 RWLQRLL LGG F LK RG +L W +D Q +RP P PPL QP++YSFS Sbjct: 726 RWLQRLLALGGEAFEAELKGRGNRFLQWAALIDRGDAQAPAQRPSPKPPLALQPKSYSFS 785 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ +L DPYA+YARR+L+LD + F +DP +RGTL+H II I++ TP+ Sbjct: 786 EVGRLRRDPYAIYARRVLRLDPVEPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDAAA 845 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 M+ I+ F+ E LPPHID +WR F ++ +FLE E + I K + M +E Sbjct: 846 AMEAILSELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVRGGMELEP 905 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 I I LTG ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL AG+F Sbjct: 906 INIRLTGVADRIDVTGPHSADIIDYKTGFNPSPAQARVLLDPQLALEAAALSAGAFRDAG 965 Query: 954 CRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 +L Y+RL+ + + K SA +L+ +S+ L++ V LLQ+ E+ Sbjct: 966 SLMPQDLLYVRLRPGSRFQVDTVNNESSARSDKAKSAMDLAAESIDQLVKFVGLLQSNER 1025 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S L +++ + +YDHLARV+EW Sbjct: 1026 GFTSRLIPAQQFDFGGDYDHLARVSEWSTAE 1056 >gi|294851329|ref|ZP_06792002.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026] gi|294819918|gb|EFG36917.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026] Length = 1052 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 379/1044 (36%), Positives = 585/1044 (56%), Gaps = 20/1044 (1%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + K +F+I P PF AL+ G L+E F P +PL LAS TIYVPT+RA + LR+ Sbjct: 8 DGKQRLFSIPPGQPFLPAFAKALIEGRLIEGFPGHPSDPLALASATIYVPTRRAARALRT 67 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY--NLNPPVSNIQRLLELARLILIWR 120 +++ KS ILP I LGDV E+ + + +LNPP+ +RLL LARLI WR Sbjct: 68 ILVDLNPVKSAILPRISPLGDVDEDAAFFNAGAAGVFDLNPPIGTAERLLLLARLIRPWR 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 LP ++ L+ +S+P + A+AIWLA++LA ++D +ET+ KW L ++ + W Sbjct: 128 ESLPSHVRALFGVDDVSVPATTADAIWLARDLAALMDQVETDGAKWSKLTSIAPDDLADW 187 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + FL I ++ W + L E S+P ++ L+R+E + L GP+I AGSTGSI Sbjct: 188 WRVTLGFLDIVTRLWPDILAERRLSNPAAHRNDLIRSEVKRLRDHPPAGPVIAAGSTGSI 247 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ST+A+ P GA+VLPGLD + A W + E N + HPQY L KL Sbjct: 248 PATAELISTIASLPQGAVVLPGLDRDLDEAAWKLLGEAGDN-----PSIFGHPQYGLHKL 302 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK--IPNIQKCFS 357 L + R+DV L ++ R ++S++ P +T+D + +++ + Sbjct: 303 LQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRDPDMQPSALREAAA 362 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 + L+EA NEREEA+++A+ALR +L + +K +AL+TADRNLARRV EL RFGI+ D S Sbjct: 363 RIDLVEASNEREEALAVALALRDALADERKTAALVTADRNLARRVVGELARFGIDADDSG 422 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L +++L L+ +F D +A+ LVKHPL + G A LELVA R Sbjct: 423 GRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGARIDRRLAGETLELVAFR 482 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G DI+DL + R+ + P W + ++++ E A L + + + PL + Sbjct: 483 GGTGRADILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAARGLCESLSAAVEPLAPF 542 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 T T I + + TV L+N+ DE + + E G+ L+S +I + + Sbjct: 543 VTANRRT----DIGEIARATVEALENMARDETGSVAAFYSGERGEKLASFLRGLISSEAE 598 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + A+EW I+ L+ GETVKP LFI G LE+RL D +++GGLNEG WP Sbjct: 599 LDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAIVIGGLNEGSWPTK 658 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T +PF+SR M++ + L E+ G AAHDF+MA G H++ TRS R +N PT+ RWLQ Sbjct: 659 TRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVVLTRSQRSDNAPTVPLRWLQ 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + G D + ++ RG ++ W+R++D P ++P+P PP+ A+P+ +S +EI+ Sbjct: 719 RLETVLGADVTNEMRGRGTRFIHWSREIDRAEDVPFVRKPEPAPPVAARPKHFSVTEIET 778 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA++A++ILKL + +DP +RGTLFH+I+ + I+ P+ + + Sbjct: 779 LRRDPYAIFAKKILKLRPLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLME 838 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGI 896 + F +LP I+ +W F + FL+ E + +++ F I K +E++GI Sbjct: 839 LGRILFADMDLPLEIEAVWWPRFTALIPQFLQWERERAYKVQERFAEIASQKREVENLGI 898 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L+G ADRIDL++ G +I DYKTG P + A L+ PQL+LEAA L G+F + + Sbjct: 899 TLSGRADRIDLMRDGTAEIIDYKTGSTPSPKQAHVLLSPQLALEAALLARGAFLDVGPVR 958 Query: 957 VANLFYIRLKQKFKIDC-----ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +L Y+RLK ++ I+ + +A L E++ + L +++ Q E+ ++S Sbjct: 959 ACDLTYVRLKAAGEVKPESILKISRPPSEKTAPALGEEAWQRLAQLLAEYQKPEKGYLSR 1018 Query: 1012 LRLSEKSNIQSEYDHLARVAEWRE 1035 ++++ +YDHLARV EW Sbjct: 1019 ALPFRETDLTGDYDHLARVLEWSA 1042 >gi|83953058|ref|ZP_00961780.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1] gi|83842026|gb|EAP81194.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1] Length = 987 Score = 625 bits (1612), Expect = e-176, Method: Composition-based stats. Identities = 286/1048 (27%), Positives = 453/1048 (43%), Gaps = 82/1048 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF +AP F +E++ LL+ R + + + + V T+R + LR Sbjct: 4 PQDAPRVFGLAPGVDFPKELVRGLLS-------RLEGQPAHAIGRIDLVVNTRRMQRRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F ++LP I + ++ L +L P ++R LEL L+ + Sbjct: 57 DIF---DAGPPSLLPRIHLIDNLD------TLGSGVDLPRPGPALRRRLELITLVSKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + P++ A+ L+ +LA +ID ++ E E + L W Sbjct: 108 QAPELAPR-------------ASLYDLSDSLAQLIDEMQGEGVPVEAVTELDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL IA +Y E + + + R AE + P+I+AGSTGS Sbjct: 155 ERAKQFLAIAHQYLGESVTRPDP--RARQRQVAQRLIAEWEQNPPRHPVIVAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +A LM VA P GA+VLPG +P A+W + E HPQY LL Sbjct: 213 SALLMEAVAKLPQGALVLPGFCFDMPQAVWTDLGE------DQEKISQDHPQYRFRDLLR 266 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L++ R ++ + R+ ++S S P + + T+ K+P++ + + L Sbjct: 267 QLEMSRSKIEAWTDTPPPSAARNALVSLSLRPAPVTHVWLTE--GPKLPDLHQATEGLTL 324 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I+A R EA++IA+ LR ++++ K +ALIT DR L+R+V L R+ I D SAG+PL Sbjct: 325 IQAPTPRAEALAIALRLRQAVED-GKTAALITPDRMLSRQVTSALDRWNILPDDSAGLPL 383 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + + D A+ TL+KHPL G + LEL R Sbjct: 384 HLSPPGRFLRHVGDLFLRKLDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLP 443 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + L ++ K+ + W + + Sbjct: 444 YPDAEGVLKLARKTVSRSKDPAQMDVWADWVGTHLTDC---------------------- 481 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIE-TGSCIK 599 G+ + DW L + + PN LW G+ + + + + E + Sbjct: 482 -ELTGDRPLEDWVALHMALADAIADGATPSQPNGLWQHHAGEEAAKVMNDLAENAPYGGE 540 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ D++ L+ ++ + + I GTLE+R+ D +ILGGLN+ WP+ Sbjct: 541 MSAADYTDLVGALLQQGEIRDRDAPHPNVMIWGTLEARVQGADLVILGGLNDSTWPEAPP 600 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ IG +AHD++ + + TR++R + T+ SRWL RL Sbjct: 601 PDPWLNRQMRLKAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG + + KRG +LD R L+ T+ P RP P PP A+P S Sbjct: 661 GNLLNGLPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSV 720 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YA+ LKL + + PD RG + H I+ IK + Sbjct: 721 TEIKRLIRDPYAIYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTK 780 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890 + + + E E P ++W +I+ F+E+E QS Sbjct: 781 SHLLETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHE 840 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 +G L GFADRID + G + I DYKTG P QK D QL LEAA ++ G F Sbjct: 841 FPDLGFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAE-QKAFDKQLLLEAAMVEEGGFK 899 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 +I VA YI L K + DE + L L ++T + EQ F + Sbjct: 900 EIGPAPVAQAAYIGLGSKPVERPAPLE------DEPPHEVLAKLHALITSYLSDEQGFTA 953 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ + ++ +YD LAR EW + Sbjct: 954 R-RMVKTTDFAGDYDQLARFGEWDATTE 980 >gi|83942009|ref|ZP_00954471.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36] gi|83847829|gb|EAP85704.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36] Length = 987 Score = 623 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 286/1048 (27%), Positives = 453/1048 (43%), Gaps = 82/1048 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF +AP F +E++ LL R + + + + V T+R + LR Sbjct: 4 PQDAPRVFGLAPGVDFPKELVRGLLA-------RLEGQPAHAIGRIDLVVNTRRMQRRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F ++LP I + ++ L +L P ++R LEL L+ + Sbjct: 57 DIF---DAGPPSLLPRIHLIDNLD------TLGSGVDLPRPGPALRRRLELITLVSKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + P++ A+ L+ +LA +ID ++ E E + L W Sbjct: 108 QAPELAPR-------------ASLYDLSDSLAQLIDEMQGEGVPVEAVTELDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL IA +Y E + + + R AE + P+I+AGSTGS Sbjct: 155 ERAKQFLAIAHQYLGESVTRPDP--RARQRQVAQRLIAEWEQNPPRHPVIVAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +A LM VA P GA+VLPG +P A+W + E HPQY LL Sbjct: 213 SALLMEAVAKLPQGALVLPGFCFDMPQAVWTDLGE------DQEKISQDHPQYRFRDLLR 266 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L++ R ++ + R+ ++S S P + + T+ K+P++ + + L Sbjct: 267 QLEMSRSKIEAWTDTPPPSAARNALVSLSLRPAPVTHVWLTE--GPKLPDLHQATEGLTL 324 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I+A R EA++IA+ LR ++++ K +ALIT DR L+R+V L R+ I D SAG+PL Sbjct: 325 IQAPTPRAEALAIALRLRQAVED-GKTAALITPDRMLSRQVTSALDRWNILPDDSAGLPL 383 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + + D A+ TL+KHPL G + LEL R Sbjct: 384 HLSPPGRFLRHVGDLFLRKLDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLP 443 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + L ++ K+ + W + + Sbjct: 444 YPDAEGVLKLARKTVSRSKDPAQMDVWADWVGTHLTDC---------------------- 481 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIE-TGSCIK 599 G+ + +W L + + PN LW G+ + + + + E + Sbjct: 482 -ELTGDRPLEEWVALHMALADAIADGATPSQPNGLWQHHAGEEAAKVMNDLAENAPYGGE 540 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ D++ L+ ++ + + I GTLE+R+ D +ILGGLN+ WP+ Sbjct: 541 MSAADYTDLVGALLQQGEIRDRDAPHPNVMIWGTLEARVQGADLVILGGLNDSTWPEAPP 600 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ IG +AHD++ + + TR++R + T+ SRWL RL Sbjct: 601 PDPWLNRQMRLKAGLLLPERRIGLSAHDYQQSIAAPEVCLTRAIRSDEAETVPSRWLNRL 660 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG + + KRG +LD R L+ T+ P RP P PP A+P S Sbjct: 661 GNLLNGLPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSV 720 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YA+ LKL + + PD RG + H I+ IK + Sbjct: 721 TEIKRLIRDPYAIYAKHSLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTK 780 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890 + + + E E P ++W +I+ F+E+E QS A Sbjct: 781 SHLLETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHA 840 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 +G L GFADRID + G + I DYKTG P QK D QL LEAA ++ G F Sbjct: 841 FPDLGFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAE-QKAFDKQLLLEAAMVEEGGFK 899 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 +I VA YI L K + DE + L L ++T + EQ F + Sbjct: 900 EIGPAPVAQAAYIGLGSKPVERPAPLE------DEPPHEVLAKLHALITSYLSDEQGFTA 953 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ + ++ +YD LAR EW + Sbjct: 954 R-RMVKTTDFAGDYDQLARFGEWDATTE 980 >gi|126724546|ref|ZP_01740389.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150] gi|126705710|gb|EBA04800.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150] Length = 975 Score = 622 bits (1603), Expect = e-175, Method: Composition-based stats. Identities = 274/1048 (26%), Positives = 440/1048 (41%), Gaps = 97/1048 (9%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P F +A F ++ ++L+ R P +A+ IYV T R + L+ Sbjct: 4 PSVNPRFFGLAMGVDFPAAIVSSILD-------RLQNTPPETIANTVIYVNTSRMQRRLQ 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 S F + LP I + + E L P+ ++R L LA+L+ Sbjct: 57 SLFAAR---GAMFLPRILLITQITEH------PALIGLPQPMPKLRRRLVLAQLVRKLLK 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ A LA +LA ++D ++ E ++DL L + W Sbjct: 108 TAPDLAPQHA-------------AFELADSLASLLDEMQGEGVGFDDLRELDVAHHSAHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240 + FL I Y +++ E Q A + + K + P+++ GSTGS Sbjct: 155 ERSLKFLSIVETYLADQVDE---MDSEAQQRAAVDRLSRVWEKSPPQHPVMVVGSTGSRG 211 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ATA+ M VA+ P GA+VLPG D +P + W + + + HPQ+ + + Sbjct: 212 ATAKFMHLVASLPQGAVVLPGFDVDMPQSTWAALGDALSG--------EDHPQFRFKQFM 263 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + V + R+ ++S + P ++ ++ K+ ++ + D+ Sbjct: 264 EH------GVHDWIKATPVSSTRNRLVSLALRPAPVTNEWLSE--GPKLGDLVEATKDIT 315 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA++ REE+ +IA+ALR ++++ +ALIT DR L+R+V L R+ I D SAG+P Sbjct: 316 LIEANSRREESQTIALALRKAVED-GVSAALITPDRELSRQVSAALDRWNIRADDSAGLP 374 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL-AKFGFPEKYLSRAKNALELVALRGN 479 L T L + + ++ L+KHPL R LEL R Sbjct: 375 LHLTPPGRFLRLVAGFFGQAVTAESLLILLKHPLTCSIKDQRGAHLRWVRELELRLRRYG 434 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 DL + + ++ V VD I C Sbjct: 435 PAFPTADDLSAWAT--------------------AQKEDGLVEWVDWINACFAGCNEI-- 472 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCI 598 G S+SD + + LW E+EGK + + + E Sbjct: 473 ------GTQSLSDHLTHHLKMANQLAAGPDDSEHQLWAEDEGKAATKIMEGLQDEAHQGG 526 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 K E+ ++ L+ + +E + I GTLE+R+ D +ILGGLNEG+WP + Sbjct: 527 KMAPFEYAALLHSLLQDGEARSSVEAHPDVMIWGTLEARVQGADLVILGGLNEGIWPGDA 586 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 A +P+L+R ++ L E+ IG AAHDF+ A +I TR++R T+ SRWL R Sbjct: 587 APDPWLNRSLRHQAGLLLPERRIGLAAHDFQQAIAAPKVILTRAIRNAEAETVPSRWLYR 646 Query: 719 LLVLG--------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRT 769 L L G ++ RG+ + + LD RP P PP++ +P+ Sbjct: 647 LTSLLDGLRGDQNGNAALAEMRFRGRAWQSLAQALDRPDAPVVPMTRPSPCPPIDVRPKL 706 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI+ LI DPYA+YA+ +L L + + PD RGT+ H I + K + Sbjct: 707 LSVTEIQTLIRDPYAIYAKHVLGLTALDPLRPTPDPRLRGTIIHEIFHKFSKATKSGMPE 766 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 L+ D F KE P IWR + +H F+E E + + + Sbjct: 767 NAIDLLLTTTDDVFAKEIPWPATRRIWRARLARNAHWFVETEIARRKLATPTYFETKGHI 826 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 I + + + G ADRID+ G + I DYKTG P Q D QL +EAA + G F Sbjct: 827 PIPNTPVAIKGTADRIDVAPDGQLIIYDYKTGSPPSPNVIQS-FDKQLLIEAAMAENGGF 885 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 V+ L YI L + K I K S L +++ Q+ + + Sbjct: 886 MDSGPSPVSGLVYIGLARTPKEQKIDLTKHSVS------DVWAGLSDLLGQYQSLTKGYT 939 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037 S + ++++ + ++DHLAR EW Sbjct: 940 SRRAMQKEADAR-DFDHLARFHEWDVSD 966 >gi|307942841|ref|ZP_07658186.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4] gi|307773637|gb|EFO32853.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4] Length = 1058 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 334/1054 (31%), Positives = 517/1054 (49%), Gaps = 28/1054 (2%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V++I S PF + + AL++GTLV FR +PLLL + T+Y+PT+RA + L F ++ Sbjct: 9 VYSIPSSVPFLKTLATALVDGTLVPGFRP-LDDPLLLPTATLYLPTRRAARLLPEIFQDL 67 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNKLPDI 126 G K +LP+I+ +GD E+ L P + ++R L + RL++ W+ L Sbjct: 68 FGGKPVLLPVIRPVGDTEEDLQLLSAEADGEALPPSMPVLERHLAMTRLVMAWKGALRRE 127 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + +L PL +P S A+A WLA +L ++D IETEE W D+ L + + +W + D Sbjct: 128 VLNLGLNEPLGVPASAADAAWLAADLLSLMDEIETEEADWSDIAKLVPDDHARYWQITLD 187 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARL 245 FLKI + W L E P + AL+R EAE L KGP+I+AG TGS+PATA L Sbjct: 188 FLKIVQEAWPAHLAERGLMDPKARRSALIRKEAERLLTNPPKGPVIVAGVTGSVPATAAL 247 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNT-------ITEKSTNITSSNTTYSTHPQYSLAK 298 + V+ AIVLPGLD + T+ W S S HPQYSL K Sbjct: 248 LKAVSRLDRSAIVLPGLDLTMDTSSWEALEGPSPKAGTIIKPGGKSMPGLSAHPQYSLKK 307 Query: 299 LLDFLDIKREDVKRLGN-VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 +L L + R V LG + R ++S++ P +TSD + + Sbjct: 308 ILSELQVDRSAVSCLGEKPEPALQARERLLSEAMRPAETSDGWMAYLGRVREKERAAALE 367 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +V+LI A NE +EA+SIAIALR +L+ + +ALI+ DR L RRV EL R+ I +D SA Sbjct: 368 NVSLIAARNEADEALSIAIALREALE-VGETAALISPDRFLTRRVASELARWKIQVDDSA 426 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PL T + + D + + L+KHPL + G P K A ALE LR Sbjct: 427 GRPLDQTPPAILAILTAKLALYGCDPLDLLALLKHPLCRLGLPAKDNRSAARALERGVLR 486 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNN------THVPHWQSRLSEEDKELAVLLVDHILQCI 531 G + + LK V + + ++ E D + LV + + Sbjct: 487 GPRAAPGTAGLKDAVDAARLEAEKRMAEEGTSRELPRWKKIHEADWTVLSDLVTQLGNAL 546 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 PL + I D + + + DE L+ EE G ++ ++ Sbjct: 547 APLEAIA----DLTAPMPILDLAEAHARAVAAIAEDETGSPDELYAEEAGDVFAAFMVEL 602 Query: 592 IET-GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + ++ +W ++T L+ G V+ ++ + ILG LE+RL FD +ILG LN Sbjct: 603 LSAKDTGLELKPADWPAVLTALMSGHAVRRRLPGDPRVQILGPLEARLQQFDRVILGSLN 662 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EG WP+ T +P+L+R M+ DL L+ E+ IG +AHDF M G + +I R+ R + PT Sbjct: 663 EGTWPQKTRNDPWLNRPMKRDLGLEPPERRIGASAHDFCMGFGAKTVILARAARADGAPT 722 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK-QPHYKRPKPFPPLEAQPRT 769 +ASRWLQRL L G D ++ RG Y D +D RP P PP+ +P+ Sbjct: 723 VASRWLQRLTTLAGPDITKDMSGRGAVYSDLAEAIDRADGLVTPAPRPNPAPPVAIRPKQ 782 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI++LI DPYA++AR +L L + +P+ D+G + H+ + + + Sbjct: 783 LSVTEIERLIRDPYAIFARHVLDLQPVDPIGGEPNAADKGNIIHDALAKFLSDWDGPFNE 842 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-- 887 + I + F + P + +W F +I+ F+ E + +E ++ + Sbjct: 843 TAVAHLVSIGEKLFAPLDAFPSVRALWWPRFLRIADGFVAFEARRAPKVEHRYLEVGGGV 902 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + + S+ L G ADRID++++G + I DYKTG P + + L+ PQL LEAA + Sbjct: 903 DLKLPSLDFLLKGRADRIDVMENGSIAILDYKTGQVPSLKQVEALLAPQLPLEAAMITRA 962 Query: 948 SFSQIDCRKV-ANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 F+ I + + Y++LK + + K EL E + L +V E Sbjct: 963 GFNDIPADRSFSEFLYLQLKGGTDPVIEAPRNPKDCDLKELGEDAFARLETLVVHYSKPE 1022 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039 ++S R+ ++ +I +DHLARVAEW + Sbjct: 1023 TGYLSRARVMKERDIAGPFDHLARVAEWSSAGED 1056 >gi|114769725|ref|ZP_01447335.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255] gi|114549430|gb|EAU52312.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255] Length = 985 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 277/1051 (26%), Positives = 449/1051 (42%), Gaps = 89/1051 (8%) Query: 1 MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58 M + K P VF + F R + L + R P LA V +++ T+RA + Sbjct: 1 MFDSKNIPRVFKVPVGVDFSRVFLDGLKS-------RLHEKEPHELARVIVFINTRRAER 53 Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 +L+ FIE S++LP + D+ ++ NL + R++ L +LI Sbjct: 54 KLKELFIE---SGSSLLPQFHLITDLSDDPLKL-----CNLPAQAPSHHRMINLGQLIRK 105 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 PD+ + LA++L+ ++D + E + D+ L ++ Sbjct: 106 LLLTEPDLAP-------------ISATYDLAESLSALMDEAQGEGIQMTDVLNLDVGEHS 152 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237 W + FL I + +W + + P ++ A+H T I+IAGSTG Sbjct: 153 AHWNRSKKFLSILATHWKQNA----LTDPEDRMRHVVETYAKHWDINPTNQTILIAGSTG 208 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 S ATA M +A PNGA++LPG+D +P +W+ + K + HPQ A Sbjct: 209 SRGATALFMKAIAKLPNGAVILPGVDDDLPKDVWSALKTKKFTL--------DHPQAGFA 260 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 KL D L I +DV + R+ +IS + P ++ K P + K Sbjct: 261 KLFDLLKIDFDDVDPWHKANIRNIDRNKLISLALRPAPITNQWLEYGPLLK-PYLNKATQ 319 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 D+ LIEAD +EEA++IA LR + ++ + + LI+ RNL RRV L R+ I D SA Sbjct: 320 DLELIEADTIKEEALAIATRLRFATEQ-GQAAVLISPSRNLTRRVNANLARWNIEADDSA 378 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PL + L S+ L+KHPL G + +E+ Sbjct: 379 GTPLQLSTTGIFLRSIAQCFGNSTLSYDFLALLKHPLTHSGKGRNIHNLMTMEIEVGQFN 438 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 G K + H W + + PL Sbjct: 439 GAKILRGGPPFIDF-DILSGWATKDPHKTIWVKW---------------LTRIFQPLRDA 482 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETG- 595 K + +S+W L + + E+ +W ++ GK +I+ Sbjct: 483 KEME--------LSEWLNLLKKTAETLSSSPENDIDAKVWEKDSGKAALKTLDQILHQSV 534 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S + IE+ + ++ E + + I GTLE+R+ + D +ILGGLNE WP Sbjct: 535 SSGIMSNIEFNAFLRSILSQELRSETQSANPLISIWGTLEARVQSKDLVILGGLNEDTWP 594 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + +L+R M+ L+L E+ IG +AHDF+ A +++ +RSLRE + P+ SRW Sbjct: 595 SKPNHDMWLNRDMRKQLSLLLPERRIGLSAHDFQQAVSAHNVVLSRSLREGDTPSTPSRW 654 Query: 716 LQRLLVLG------GTDFFDNLKKRGQCYLDWTRKLDYTTKQ---PHYKRPKPFPPLEAQ 766 L R+ L G + D ++ G +L + R LD + P RP P PP A+ Sbjct: 655 LIRITNLMQGLKNEGPNALDEMRNNGNQWLTYARSLDRVDETKKIPFETRPSPIPPENAR 714 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S ++IK L+ DPY +YA ILKL + K D +RG H I+ E I++ N+ Sbjct: 715 LEKLSVTQIKDLVRDPYKIYASVILKLKKLDPLGKQADAIERGNTIHTILEEFIRQTQNE 774 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++L +I + +K+ P +W IS SF+E E K ++ I + Sbjct: 775 LPENASNLFMKITNEVLKKDVPWPAAQRLWLARMQAISSSFIEEEIKRRAVGINIALERY 834 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 ++ + + LT ADRID K+G + + DYK P Q D QL LEA Sbjct: 835 GEIDFQDLKFKLTAKADRIDQGKNG-LRLYDYKASKPPSLGDIQY-FDKQLQLEAMIAFH 892 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 F++I + + +L YI L + K + D ++ S K + ++ + + Sbjct: 893 DGFNKIRKQSIEHLEYISLGPELKKQPLDIDDQEIS------KIVDEFRNLILTYNDPSK 946 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F + ++ N S+YD L+R EW++ Sbjct: 947 GFTARDKIQF-LNHISDYDQLSRKGEWQDSD 976 >gi|304392406|ref|ZP_07374347.1| double-strand break repair protein AddB [Ahrensia sp. R2A130] gi|303295510|gb|EFL89869.1| double-strand break repair protein AddB [Ahrensia sp. R2A130] Length = 1070 Score = 613 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 320/1060 (30%), Positives = 510/1060 (48%), Gaps = 29/1060 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRY----DPLNPLLLASVTIYVPTKRAIQELRS 62 N+ +I P + F + ++ L+ G LVE F +PL LA VTI+VPT+RA + L + Sbjct: 9 NIVSIPPGAAFLQTLVEKLVCGELVEGFAPFADGAESDPLALAGVTIWVPTRRAARSLAT 68 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTAD------LLLSYNLNPPVSNIQRLLELARLI 116 +F+ G ++ +LP I +LGD EE LL + + L L+RL+ Sbjct: 69 QFVTRLGNRAAVLPRIVTLGDGDEEGLEFQRFVAGNDLLVPSEAQAIDPFIHTLTLSRLV 128 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + L + + + + +P S A+AI A L +++ I TE+ +W L+ L Sbjct: 129 HSWASALRENERAMMGGGDIIMPSSLADAIGFAGELGSLMESIATEDIEWSQLNLLDVAD 188 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGS 235 + WW L FL IAS L E P + L+R +A+ + G+ GP+I AGS Sbjct: 189 HADWWQLTLKFLTIASDAMPAFLHERGLEEPARLRGRLIREQAQQYREHGSTGPVIAAGS 248 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGSIPATA L+ +A PNGA+VLPGLD + W+ + N + + T HPQY Sbjct: 249 TGSIPATADLLQAIAALPNGALVLPGLDRDLDDESWSKVD-LPDNAKNEDGTAPGHPQYG 307 Query: 296 LAKLLDFLDIKREDVKRLG------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 L KLL + + R + S + R ++S++ P T+D + Sbjct: 308 LKKLLTSMKLSRGHDEIEHITLSAEPDSGPLRVREHIVSEALRPSATTDKWQDFATKYDD 367 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 + + V+++EA ER+EA++IA+ALR +++ +AL+T DRNLARRV +E+ RF Sbjct: 368 AQKAEALAGVSIVEARGERQEALAIALALRETIETEGATAALVTPDRNLARRVAVEMRRF 427 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 I +D SAG PL + L F D +A+ L+KHP + G P Sbjct: 428 DIVVDDSAGQPLRNRPAGTFARLALATAFGPIDPVALTGLLKHPDLRLGLPRAKARHGAR 487 Query: 470 ALELVALRGNKNSYD---IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 LEL LRG + D + + + P S + + +LL+D Sbjct: 488 LLELAILRGAIMPPERGFFEDAAQTLRRTLLQVIADEKTPRAHSTIVRMSDDEWLLLIDF 547 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + + + W + T ++ + +DEH +L + +G L Sbjct: 548 CQRLDEAV--LLIEDDVLNTKQPLDRWGQCTTAFIEALAIDEHGELAPFYNTTDGAALHG 605 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 ++++++G + A W D+ L+ TV+ + + ILG LE+RL FD ++L Sbjct: 606 FLAQLLDSGEELDTTADHWPDVFDALMGQRTVRAQGGTDPRIAILGPLEARLQTFDRVVL 665 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 GGLNEG WP +PFLSR M++ L L + E+ G AAHDF+M G ++ TR+ R + Sbjct: 666 GGLNEGTWPAAARNDPFLSRPMKAQLGLPSPERRTGLAAHDFQMMMGMADVVLTRAARAD 725 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEA 765 N PT+ASRW+QRL+++ G+ +++RG+ + DW +D + +RP P PP++ Sbjct: 726 NAPTVASRWVQRLMLVAGSHATTAMQERGRKFTDWVTAIDAPKETEKPAQRPAPKPPVDV 785 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 +P S + + I DPYA+YA+ IL L + +D D +RG L+H + E ++ IN Sbjct: 786 RPNRLSVTAVATWIEDPYAIYAKHILGLQPLQPLIRDADARERGELYHQVFEEFVRSGIN 845 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + + F + +P W F +I+ FL + + K+ V Sbjct: 846 PEADHAMDQLLLSAKAVFGEAEIPQEFIAQWLPRFTEIAEEFLSWHARQIAGGHKVTVER 905 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + G LT ADR+D G I DYKTG +P A+ + PQL LEAA Sbjct: 906 SGRTEKGLNGFTLTARADRMDRDVDGRFIIYDYKTGASPTAARARDMKAPQLPLEAAMTI 965 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE----LSEKSLKNLIEIVTLL 1001 G+F +VA Y+RL + + + ++E++ K L ++ Sbjct: 966 RGAFGDDLQGEVAGFGYLRLIPGTPKFADMAVQPDHGDPDMATQIAEEAWKRLGAMIKKY 1025 Query: 1002 QNGEQPFISHLRLSEKSNIQ-SEYDHLARVAEWREEYDIS 1040 ++ QP+ S+ R ++ S+YDHLAR+ EW D S Sbjct: 1026 RDKSQPYRSYNRPPKERRSYSSDYDHLARLGEWSNGADDS 1065 >gi|163732945|ref|ZP_02140389.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149] gi|161393480|gb|EDQ17805.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149] Length = 985 Score = 613 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 266/1048 (25%), Positives = 442/1048 (42%), Gaps = 86/1048 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + P VF +AP F + ++ LL R P LA V + V T R + LRS Sbjct: 5 SDTPRVFGLAPGVDFPKGLMQGLLE-------RVSQTAPEELARVQVIVNTSRMQRRLRS 57 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + +LP I + + + L + P V ++R LEL L+ + Sbjct: 58 LF---DAGPARLLPKIHLVTQLDQ------LAPGIAVPPAVKPLRRRLELIALVARLIEQ 108 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 ++ + L +LA ++D ++ E + ++ L W Sbjct: 109 QKELAPR-------------TSLYDLTDSLAALMDEMQGEGVTADTINGLDVSDLSGHWQ 155 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241 F++IA Y + Q + A A+ + P+I+AGSTGS Sbjct: 156 RTQTFIRIAQDYLSRTTTTP---DKEAQQRQFVSALADRWAIDPPRHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA+VLPG D +P W + + + HPQY KL+ Sbjct: 213 TMLLMEAIARLPQGALVLPGFDFDMPRQQWLHLDDALLS--------EDHPQYRFYKLMQ 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + R D+ N R+ ++S S P +D T+ K+ + + + L Sbjct: 265 HIGVGRSDISPWHNAPPPSPARNALVSLSLRPAPVTDAWLTE--GPKLHTLNEATQQITL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA++IA+ LR ++++ +K+A+IT DR L R++ L +F I D SAG PL Sbjct: 323 LEAPSPRSEALAIALRLRKAVED-GQKAAVITPDRMLTRQITAALDQFDILPDDSAGAPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + D A+ TL+KHPL LEL R Sbjct: 382 HLSPPGRFLRHVAALFHRRLDAEALLTLLKHPLTHSSTNRAEHILNTQRLELRIRRDGLP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D ++ + ++ V W + + + Sbjct: 442 YPDADSIQVALSGVSPNPEHQNAVDVWGTWVGQ-----------------------TFAS 478 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKIIE-TGSCIK 599 T G ++ W + + + + +W ++ G+ + + + + Sbjct: 479 VQTSGEHPLTHWAQAHMALAEAISSGPFGHDTGEIWKQKAGQEALKVMTNLTDLAHHGGP 538 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ +++ L+ V+ + + I GTLE+R+ D +IL GLN+G WP+ Sbjct: 539 MTASDYGNLVGALLSEGEVRDRDAPHPDVMIWGTLEARVQGADLVILAGLNDGTWPEAPT 598 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ L E+ IG AAHD++ A + TRS+R ++ T+ASRW+ RL Sbjct: 599 PDPWLNRALRHQAGLLLPERRIGLAAHDYQQAIAAPEVWLTRSIRSDDAETVASRWVNRL 658 Query: 720 LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L G + +K RG +LD T L+ RP P PPL+A+P+ + Sbjct: 659 CNLLSGLKGQDGPALLEAMKNRGTFWLDQTVLLEKVEPAAPAARPAPRPPLDARPKRLAV 718 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 ++IK LI DPY VYA+ +L+L + + PD RGT+ H ++ + +++ + Sbjct: 719 TDIKHLIRDPYTVYAKHVLRLRKLGPLVQSPDALLRGTVSHQVMEDFVRRTLADPATLTA 778 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMA 890 + + D ++ P +W +IS F+ +E Q + KM Sbjct: 779 QDLVDVADEVLMRDVPWPAARALWLARLTRISEWFVVNERARQHIGMPVAFEEDAVGKMV 838 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I LT ADRID + G V I DYKTG P + Q L D QL +EAA ++ G+F Sbjct: 839 WPDIKFTLTARADRIDQTEDGDVLIYDYKTGSPPTVKQ-QTLFDKQLLIEAAMVEQGAFE 897 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 ++ + VA +I L D + + L L ++V Q +Q F + Sbjct: 898 KLGPQHVAQATFIGLGSNPSEVPAPLDSEPP------AQILAELRKLVLAYQEMDQGFTA 951 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ EK S+YD L+R EW D Sbjct: 952 R-RMMEKDQYGSDYDLLSRYGEWDVTQD 978 >gi|149912863|ref|ZP_01901397.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b] gi|149813269|gb|EDM73095.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b] Length = 978 Score = 612 bits (1578), Expect = e-172, Method: Composition-based stats. Identities = 275/1045 (26%), Positives = 450/1045 (43%), Gaps = 87/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 ++P VF + F R ++ LL R+ P LA V + V T+R + +R Sbjct: 4 PTERPRVFGVPLGVDFPRALVDGLLA-------RHASQPPEALARVQVIVNTRRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F + + +LP I+ L D+ E ++ PV ++R LEL +L+ + Sbjct: 57 ALFDQ---GPALLLPRIELLTDLGEHW------DLAHIPDPVPPLRRRLELTQLVSSLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 K PDI ++ LA +LA ++D + E + + L W Sbjct: 108 KQPDIAPR-------------SSLYALADSLASLMDEMHGEGVSPDAIEGLDVTDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL I Y+ + + ++ + PIIIAGSTGS A Sbjct: 155 DRITAFLGIVRHYFDVGTEHPDVET--RQRLVIEHVIETWQETPPDHPIIIAGSTGSRGA 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM V+ P GA++LPG D +PT +W + + + HPQY A L+ Sbjct: 213 TQLLMQAVSKLPQGAVLLPGFDVDMPTHVWGALDDAMLS--------EDHPQYRFADLMG 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + ++ R S R+ ++S + P +D D + ++ + D+ L Sbjct: 265 KLGLSPGEIARWTPDSPACPARNRLLSLALRPAPVTDQWLQD--GPSLTDLDRATQDITL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA++IA+ LR + ++ + +ALIT DR + R+V L R+GI D SAG+PL Sbjct: 323 LEAPSTRSEALAIAMRLRQAAED-GQTAALITPDRTVTRQVTAALDRWGIIPDDSAGMPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + + + TL+KHPL G R LEL R Sbjct: 382 HLSPPGRYLRHVGDLMRDTLTAELLLTLLKHPLTHSGTDRGPHLRLTRELELHLRRNGPP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D L + + A I C Sbjct: 442 YPDAASLIAWGE--------------------AQKDTTAAPWARWISDCFCA-------- 473 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKIIETG-SCIK 599 + G+L +S++ + + + P+ LW + G+ S + E + Sbjct: 474 KAVNGDLPLSEFVERHIDLANRIAQGPVDSSPHGLWRNDAGQEAWKCVSNLAEHANHGGE 533 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ + ++ G V+ + I GTLE+R+ D LIL GLNEG WP+ Sbjct: 534 ITAADYGTLFHAILSGGEVRNPDAPHPQILIWGTLEARVQGADLLILAGLNEGSWPEAPK 593 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R +++ L E+ IG +AHDF+ A + TRS+R ++ T+ SRWL R+ Sbjct: 594 PDPWLNRALRNQAGLLLPERRIGLSAHDFQQAASAPEVWMTRSIRSDDAETVPSRWLNRI 653 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG +++K RG +L L+ P KRP P PPL A+PR +S Sbjct: 654 RNLLAGLPDQGGAQALEDMKARGAHWLRLVASLEEPGYVPAEKRPSPCPPLAARPREFSV 713 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YAR +L++ + K PD RGT+ H ++ IK + T Sbjct: 714 TEIKRLIRDPYAIYARHVLRVRPLDPLMKVPDALLRGTVLHEVLDRFIKDSQHDETLCTR 773 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + +S + IWR +++ F++ E + + + ++ Sbjct: 774 DHLMAVTESVLAQNVPWAEARAIWRARMDRVADWFIDGEFDRRQIAQPCALEQSGIATLD 833 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G+ L ADRID+ +G + I DYKTG P + QK D QL LEAA + F Q+ Sbjct: 834 DLGVTLKAKADRIDIDATGSLHIYDYKTGKPPSAKE-QKYFDRQLLLEAAIAEQAGFGQL 892 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA +I L K + D +E +K E++ ++ + + Sbjct: 893 APSQVARAQFIGLGSKPETVLAPLD------EEPVQKVWIEFEELMRAYLEPDRGYTARR 946 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 + +K++ +YD LAR EW Sbjct: 947 AVFKKADK-GDYDQLARFGEWDITD 970 >gi|254511546|ref|ZP_05123613.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium KLH11] gi|221535257|gb|EEE38245.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium KLH11] Length = 975 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 282/1045 (26%), Positives = 447/1045 (42%), Gaps = 88/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF + P + F + ++ L R+ P LA V + V T+R + +R Sbjct: 4 PTTLPRVFAVPPGADFPKVLVNGL-------RRRFAGQPPDALARVQLVVNTRRMARRVR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + +LP + L D+ E + P + ++R LEL +LI + Sbjct: 57 DLFDQ---GAPCLLPRLSLLTDLGE------SADLAQVPPAIPPLRRRLELTQLISKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + PD+ ++ L+ +LA +ID ++ E + +H L W Sbjct: 108 QQPDLAAR-------------SSLFDLSDSLAGLIDEMQGEGVSPDAIHQLDVSDMSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA + L+A + + A P+I+AGSTGS Sbjct: 155 ARAQAFIGIADHFMNAGADALDA--QARQRRVVENLIARWQANPPHHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D P +W + E T+ HPQY KL+ Sbjct: 213 TLMLMQAVARLPQGALVLPGYDFDQPGPVWRNLDEALTS--------EDHPQYRFRKLML 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + + ++R R+ ++S + P +D T+ +P+++ DV L Sbjct: 265 GLGLTPDHIQRWSADQAPSPARNKLVSLALRPAPVTDAWMTE--GPDLPDLEGATRDVTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA++IA+ LR + + + +ALIT DR L R+V L R+ I D SAG+PL Sbjct: 323 VEAPSPRAEALAIALRLREAAE-TGQTAALITPDRMLTRQVSAALDRWNILPDDSAGLPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + D A+ TL+KHPL G LEL R Sbjct: 382 QLSPPGRFLRHVAGLFARRLDGEALLTLLKHPLCHDGGDRGAHLLHTRDLELDLRRHGPP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D L + + E V ++ Sbjct: 442 FPDSASLTAFAI----------------------RTETPEDWVRWVVGTFCD-------- 471 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600 G ++DW + T + + LW + G+ ++ + + E Sbjct: 472 QHKPGEQPLTDWVEQLCTLAEAISAGASGDTGRLWDKNAGQKALAVITALQTEAKYGGGM 531 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 A ++ D++ L+ GE V+ + L I GTLE+R+ D LILGGLNEG WP+ A Sbjct: 532 TAHDFADLLGALLAGEEVRDRDAPHPHLMIWGTLEARVQGADLLILGGLNEGSWPEAAAP 591 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR-- 718 +P+L+R M+ L E+ IG +AHDF+ A G + TR++R ++ T+ SRWL R Sbjct: 592 DPWLNRQMRDAAGLLLPERRIGLSAHDFQQAIGAPEVFVTRAIRSDDAETVPSRWLNRIT 651 Query: 719 -----LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L GGTD ++ RGQ +L L+ + RP P PP+ A+PR S + Sbjct: 652 NLLQGLPAQGGTDALTAMRARGQLWLGRAEMLEQAPRITAAIRPSPRPPVAARPRRLSVT 711 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+K+LI DPY +YAR +L+L + + PD RG + H ++ I+ + Sbjct: 712 EVKRLIRDPYDIYARHVLRLKPLDPLVQAPDALLRGIVIHEVLEHFIRDSVLDPALLTRE 771 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + + P +W +I+ SFL E + ++ + + K+A+ Sbjct: 772 NFLKRASTLLNEYVAWPTARKLWLARLERITDSFLSAELQRRNDGCPVAFEVAMKLALAP 831 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + + G ADRID G + I DYKTG P + Q D QL +EAA + G D Sbjct: 832 LDFTIAGRADRIDRSGHGALRIIDYKTGTPPTENQ-QAKFDKQLLIEAAIAEQGGVDGFD 890 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 VA +I + +K K E ++K L L E+++ +Q F S Sbjct: 891 PLPVAQAIFIGMGGTYKEVPAPLQK------EPADKVLSELKELISAYLEPDQGFSSRRM 944 Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038 L + ++I +YDHLAR EW + Sbjct: 945 LHKDTDI-GDYDHLARFGEWDRSTE 968 >gi|110677845|ref|YP_680852.1| hypothetical protein RD1_0453 [Roseobacter denitrificans OCh 114] gi|109453961|gb|ABG30166.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 985 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 267/1048 (25%), Positives = 443/1048 (42%), Gaps = 84/1048 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 H+ P VF +AP F + +I LL R P LA V + V T R + LR Sbjct: 4 HSDTPRVFGLAPGVDFPKGLIEGLLA-------RVAQGAPEDLARVQLIVNTSRMQRRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 S F + +LP I + ++ L + P V +QR LEL L+ Sbjct: 57 SLF---DAGPARLLPKIHLVTELDR------LAPGLAVPPAVKPLQRRLELIALVARLIE 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + + A+ L +LA ++D ++ E E +++L W Sbjct: 108 QQKGLAPR-------------ASLYDLTDSLAALMDEMQGEGVTAETINSLDVSDISGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 F++I Y + + + + ++ + P+I+AGSTGS Sbjct: 155 QRTQTFIRIVQDYLAQTTTTPDK--EAQQRQFVCALAERWAVEPLRHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA++LPG D +P W + + + HPQY KL+ Sbjct: 213 TMLLMEAIARLPQGALILPGFDFDMPHQQWLHLDDALLS--------EDHPQYRFYKLMQ 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + R D+ + R+ ++S S P +D T+ K+ ++ K + L Sbjct: 265 NIGVGRSDITPWHDAPPPSPARNALVSLSLRPAPVTDAWLTE--GPKLHDLNKATDQITL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA++IA+ LR +++E +K+A+IT DR L R++ L +F I D SAG PL Sbjct: 323 LEAPSPRSEALAIALRLRKAVEE-GQKAAVITPDRMLTRQITAALDQFDILPDDSAGAPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + D A+ TL+KHPL G LEL R Sbjct: 382 HLSPPGRFLRHVAALFHRRLDAEALLTLLKHPLTHSGSNRAAHILNTQRLELRIRRDGLP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + + V W + + + Sbjct: 442 YPDADSIGQALAGISPNADHQRGVDAWGAWVGQ-----------------------TFAA 478 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKIIE-TGSCIK 599 + +S W + + + + + LW ++ G+ + + + E Sbjct: 479 MYSTTEQPLSHWAQTHIALAEAISCGLDGQDTGELWKQKAGQEALKVMTNLAELAHHGGP 538 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ +++ L+ V+ + + I GTLE+R+ D +IL GLN+G WP+ A Sbjct: 539 MTASDYANLVGALLSEGEVRDRDAPHPDIMIWGTLEARVQGADLVILAGLNDGTWPEAPA 598 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ L E+ IG AAHD++ A + TRS+R ++ T+ASRW+ RL Sbjct: 599 PDPWLNRALRHQAGLLLPERRIGLAAHDYQQAIAAPEVWLTRSIRSDDAETVASRWVNRL 658 Query: 720 LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L G + ++ RGQ +LD T L+ RP P PPL A+P+ + Sbjct: 659 CNLLSGLKGQDGPALLEAMQDRGQYWLDQTVALEKVEPATPAARPAPRPPLAARPKRLAV 718 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 ++IK LI DPY +YA+ +L+L + ++PD RGT+ H+++ + +++ + Sbjct: 719 TDIKHLIRDPYTIYAKHVLRLRKLGPLVQNPDALLRGTVSHDVMEKFVRQTLRDPATLNA 778 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMA 890 + +I ++ P +W +IS F+ +E Q + KM Sbjct: 779 DHLIEIARDVLSRDVPWPAARALWLARLTRISEWFVMNERARQHIGTPVVFEDDALGKMV 838 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I LT ADRID + G I DYKTG P + Q L D QL +EAA ++ G+F Sbjct: 839 WPDIEFTLTARADRIDQTEDGDALIYDYKTGSPPTVKQ-QTLFDKQLLIEAAMVEQGAFE 897 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 ++ VA +I L D + + L L +V + +Q F + Sbjct: 898 KLGPHHVAQATFIGLGSNPVEVPAPLDSEPP------AQILAELRMLVLAYKEMDQGFTA 951 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ EK S+YD L+R EW D Sbjct: 952 R-RMMEKDQYGSDYDLLSRYGEWDITQD 978 >gi|126734387|ref|ZP_01750134.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2] gi|126717253|gb|EBA14117.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2] Length = 975 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 272/1048 (25%), Positives = 444/1048 (42%), Gaps = 96/1048 (9%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 +K+P++F P F + ++ L+ R L+P LA V IYV T R + +R+ Sbjct: 5 DKQPHIFASPPGVDFAQGLVAGLIA-------RTADLDPTDLARVEIYVNTTRMQRRIRA 57 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + +LP ++ + D+ + +S +L P VS +QR LEL++ + +K Sbjct: 58 VF---DTGPARLLPRVRLITDLAND------PISLDLPPAVSPLQRRLELSQFVAKLLDK 108 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PD+ A L+ +LA ++D ++ E + + +L W Sbjct: 109 EPDLAPR-------------AALYDLSDSLAKLMDEMQGEGVSPDKIASLDIADQSGHWE 155 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241 A FLKI + ++ ++ Q ++ A A+ + PI+IAGSTGS A Sbjct: 156 RALAFLKIITPFFDQQNEPP---DKEARQRMVIEALAQKWETAPPQHPILIAGSTGSRGA 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA M VA P GAI+LPG D +P +W+ + + + T HPQ+ +L+D Sbjct: 213 TALFMQAVAKLPQGAIILPGFDFDLPDHVWDAMDD--------DLTAEDHPQFRFRRLMD 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + +R DV+ S R+ ++S S P +D ++ + ++ + + L Sbjct: 265 LIGFQRHDVREWSTQSPAHPARNALVSLSLRPAPVTDQWLSE--GPDLGDLYEATKGLTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA +IA+ LR + ++ +ALI+ DR L R+V L R+ I D SAG PL Sbjct: 323 VEAASPRAEAETIALRLRQAAED-GITAALISPDRMLTRQVTAALDRWDIKPDDSAGTPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNK 480 + + L + + K A+ TL+KHPL R LEL R Sbjct: 382 ALSPPGRFLRHVADLFGKPLTGEALLTLLKHPLCHSARDDRGEHLRHTRDLELHLRRFGP 441 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 DL + A + + I L Sbjct: 442 PFPKPEDLLTWAKKGSARE----------------------DWAMWLAGLIAGLEDL--- 476 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKII-ETGSCI 598 + ++ + + +C LW E G+ +I + Sbjct: 477 -----ASRPLAHHLDQHIILAEQLCAGPTASGSGGLWDEAAGREARKTCDNLIQAAAAGG 531 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++ + +I TV+ + + I GTLE+R+ D ILGG+N+GVWP+ Sbjct: 532 TMTPHDYTALFGSVIAEGTVRDRDAGHPGILIWGTLEARVQGVDLTILGGMNDGVWPEAP 591 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+L+RVM++ L E+ IG +AHD++ A + TR+ R + T+ SRW+ R Sbjct: 592 PPDPWLNRVMRAKAGLLLPERRIGLSAHDYQQAVAGHEVWITRAKRSADAETVPSRWVNR 651 Query: 719 LLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770 L L G D + +G + L + P RP P PP+ A+P+ Sbjct: 652 LTNLLKGLPDQNGPDALAAMCAKGDQWSAMAAVLSTPQARVPSAPRPSPCPPVAARPKKL 711 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S ++IK LI DP+ +YAR+ L L + D RGT+ H I+ I+ N + Sbjct: 712 SVTQIKTLIRDPFTIYARKTLHLSPLDPLVPTADAPLRGTIMHRILERFIRAGHGPNDRD 771 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + Q+ F P I W + + FL E Q+ + + ++ Sbjct: 772 A---LMQLASEEFTAHCPWPTIRAQWMARMERSADQFLADEADRQALATDHKIEVYGEIV 828 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + G+ LT ADRIDL K+G I DYKTG P K Q D QL LEAA ++ G+F Sbjct: 829 VAPSGVLLTCKADRIDLTKTGAALIYDYKTGAVPTKNQ-QLTFDKQLLLEAAMVELGAFE 887 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + V +I + K + D ++ L + + + + + Sbjct: 888 SLGSMSVGGATFIGVNAAMKNVPAPLN------DNPPDQVWGELETLFGNWHDPSRGYTA 941 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L L K++ S+YDHL+R EW D Sbjct: 942 RLALFLKTDQ-SDYDHLSRHGEWDTSDD 968 >gi|254438249|ref|ZP_05051743.1| double-strand break repair protein AddB [Octadecabacter antarcticus 307] gi|198253695|gb|EDY78009.1| double-strand break repair protein AddB [Octadecabacter antarcticus 307] Length = 977 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 261/1048 (24%), Positives = 442/1048 (42%), Gaps = 92/1048 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VF + F R + L ++P+ P +A V IYV T+R + L Sbjct: 4 PIEIPRVFGVPLGQDFSRALYDGLKAS-------FEPMAPTDVACVEIYVNTRRMQRHLT 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 S F + + +LP I+ + D+ ++ ++ P ++ ++R LE+A+L+ + Sbjct: 57 SLFHQ---GDALLLPRIRLITDLAQDAVGR------DIPPAIAPLRRRLEVAQLVKGLID 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 P S AI LA +L ++ ++ E E + L W Sbjct: 108 ADP-------------TLASQDAAIDLADSLVALMSEMQGEGVAPETVANLDVTDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240 A F+++ +++ + + G Q ++ E P+I+AGSTGS Sbjct: 155 QRALSFIQLVQQFFVD-----DRLDGEGRQRHVIETLVERWADAPPNHPVIVAGSTGSRG 209 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 AT+ M VA P GA++LPGLD +P +W+ + +K HPQY Sbjct: 210 ATSLFMQAVAKLPQGAVILPGLDHDMPAHVWDMMEQKKGG--------EDHPQYRFKAFC 261 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D L I+ D++ G+ + R+ +IS S P + + ++ + + Sbjct: 262 DALGIRPSDIRTWGDKTKINVARTGLISLSLRPAPVTHQWI--NDGPDLGDLGEATKGIT 319 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA R +A +IA LR ++++ ++ +ALI+ DR L R+V L R+ I D SAG+P Sbjct: 320 LIEAPTPRAQADAIAARLRQAVED-RQTAALISPDRMLTRQVTAALDRWDITPDDSAGLP 378 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T L + + + D + L++HPL NALEL R Sbjct: 379 LQLTAPGRFLRHIADLFCEPLDAERLLVLLRHPLC--NSERGNHGLHTNALELEVRRNGP 436 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L + + HW K+ Sbjct: 437 PFPTDESLTNWADGTKDKHPDRVAWVHWIGATLLNLKDPR-------------------- 476 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDE-HRKLPNLWFEEEGKTLSSLFSKII-ETGSCI 598 + + V + + LW + G+ L S++ + Sbjct: 477 ------PHELGTFLDEHVKISERLAAGPNTDGSGELWKKGAGREAFRLMSELRTHADAGG 530 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A ++ ++ + + + + + I GTLE+R+ + D +IL GLNEG WP+ Sbjct: 531 VMTARDYRQLVGSTLADGEDRDRDQGHPQVLIWGTLEARVQSADLVILAGLNEGTWPETP 590 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+L+R ++ L E+ IG +AHD++ A R ++ +R++R + T+ SRW+ R Sbjct: 591 TPDPWLNRPLRMRAGLLLPERRIGLSAHDYQQAVCAREVVLSRAVRSDEAETVPSRWINR 650 Query: 719 LLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTY 770 L L GG + D +++RGQ +L T + RP P PP + +P Sbjct: 651 LTNLLGGLDEKGGPAYLDAMRERGQHWLTLTASIAAPPFTVDPAPRPSPCPPTDVRPDRL 710 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S ++IK LI DPYA+YAR+IL L+ + PD RGT+ H ++ +K I+ Sbjct: 711 SVTQIKTLIRDPYAIYARKILGLNSLDSLAHTPDAPLRGTIVHKVLERFVKANIDPTNAG 770 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + I E+ P + +W + FL E+K ++ + I ++ Sbjct: 771 AAGALLAIATDVLEERCPWPAVRALWFARIASFTPHFLAEEQKRRAYSANVDTEIRGELK 830 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + ++ LTG ADRID+ G I DYKTG P QK D QL LEAA ++ G+F+ Sbjct: 831 LANLPFTLTGTADRIDMSNDGEALIYDYKTGKTPSPAQ-QKYFDKQLLLEAAMVERGAFT 889 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + + YI L D+ DE +++ ++ + + + S Sbjct: 890 ALGSVRTKAAVYIGLGSD------LKDQSAPLNDETPDETWARFEGLIAKWMDPSKGYTS 943 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 +E + + YDHLAR EW E +D Sbjct: 944 R-SANEIVSFEGSYDHLARYGEWDETHD 970 >gi|13474240|ref|NP_105808.1| hypothetical protein mll5084 [Mesorhizobium loti MAFF303099] gi|14024992|dbj|BAB51594.1| mll5084 [Mesorhizobium loti MAFF303099] Length = 1044 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 371/1039 (35%), Positives = 582/1039 (56%), Gaps = 23/1039 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF+I P +PF + ALL G LV FR+D +PL LA VTIYVPT+RA + LR F++ Sbjct: 6 RVFSIPPGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADVTIYVPTRRAARALRGVFVD 64 Query: 67 ----ITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 G S ILP+I+ LG+ E++ F A+ + +L PP+S +RLL L L+ W+ Sbjct: 65 SLKGRGGGGSAILPVIRPLGEFDEDEALFDAEPSAAIDLAPPISATERLLLLTSLVRAWK 124 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 +LP+ + L+ E + +P S A+AIWLA++LA ++D IETE W L L W Sbjct: 125 RRLPEHVAKLFAEE-IVIPASTADAIWLARDLAGLMDEIETEGTDWTKLADLVTGNLAGW 183 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + +FL I + W + L E + S+P ++ AL+RAEA L + GP+I AGSTGSI Sbjct: 184 WQVTLEFLGIVTDAWPKFLSESDRSNPAAHRSALIRAEAARLRRNPPAGPVIAAGSTGSI 243 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ ++ P GAIVLPGLD + A + + HPQY LA+L Sbjct: 244 PATAELLAVISRLPGGAIVLPGLDRTLDEASFQALVAPGA-----RPAVLGHPQYGLARL 298 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + + R DV+ +G ++ R+ ++ ++ P +T+++ +I F +V Sbjct: 299 IGKIGVLRSDVEEVGAAEPQLALRAALVGEALRPAETTELWAETRSGFSASDIAGAFGEV 358 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 L+EA +ER+EA++IA+AL+ ++++ +++AL+T DR LARRV +EL RFG+ D S G Sbjct: 359 TLLEAASERDEAVAIAVALKQAVEQPGQRAALVTGDRALARRVAVELKRFGVVADDSGGT 418 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PL+ + +S+L L A+F+ D + + +L+KHPL G + A +ELVALRG Sbjct: 419 PLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLGLGLERAAVRHAAELVELVALRGG 478 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 DI+ L L +R+ +++ P W SRL+ E A L+ + + + PL ++ Sbjct: 479 TGRPDIVSLPELFENRLIGLGDDSRPPFWFSRLTVRSIEDARSLLARLTEALAPLSAFRG 538 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + N ++ + +V L+N+ L L+ + G+ L+ L ++ + + Sbjct: 539 HA-----NADLAALVQASVVALENLGRSADGGLAELYAGDAGEKLAELLRGLVAASASLS 593 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A EW D++ LI ETVKP + I G LE+RL + D L++GGLNEGVWP+ Sbjct: 594 FAASEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDMLVIGGLNEGVWPRKPE 653 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + F+SR+M++ ++L+ E+ IG AAHDF+MA G RH++ RS R + P + SRWLQRL Sbjct: 654 SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGARHVVLARSARSGDAPAVPSRWLQRL 713 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L G D L++RG L W R+LD KQ RP+P PPL +P +S +EI+ L Sbjct: 714 LTFIGNDQAATLRRRGDELLAWARELDTGAKQDFAPRPQPKPPLAVRPTHFSVTEIESLR 773 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 DPYAVYARRIL L + +DP +RGTLFH I+ + + P+ + Sbjct: 774 RDPYAVYARRILGLMPLDALIRDPGAAERGTLFHAILHLFSSEVADPRAPDALAGLIAAG 833 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIESIGIHL 898 + F + LP ++ +W F K++ + +E E ++ + K + G+ L Sbjct: 834 RACFVEAALPADVEAVWWPRFEKLAANIVEWERTRADAVTRRHAEERAGKTLVGQSGVTL 893 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G+ADR+DLL G DI DYKTG +P K A L+ PQL+LE A L+ G+F + R+ + Sbjct: 894 SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGAREPS 953 Query: 959 NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 L +IRLK ++ + ++++ +A +L+E++ L +++ + + ++S Sbjct: 954 QLAFIRLKPNGEVFEESILEHNRQPRTAADLAEEAWARLEKLLIHYTDPQTGYLSRALPF 1013 Query: 1016 EKSNIQSEYDHLARVAEWR 1034 + +YDHLARV EW Sbjct: 1014 REGETDGDYDHLARVLEWS 1032 >gi|260463223|ref|ZP_05811425.1| double-strand break repair protein AddB [Mesorhizobium opportunistum WSM2075] gi|259031073|gb|EEW32347.1| double-strand break repair protein AddB [Mesorhizobium opportunistum WSM2075] Length = 1044 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 369/1039 (35%), Positives = 569/1039 (54%), Gaps = 23/1039 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR----S 62 VF+I +PF + ALL G LV FR+D +PL LA VTIYVPT+RA + LR Sbjct: 6 RVFSIPSGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADVTIYVPTRRAARALRGVFVD 64 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 G S ILP+I+ LG+ E++ F A+ + +L PP+ +RLL L L+ W+ Sbjct: 65 SLKARGGGGSAILPVIRPLGEFDEDEAAFEAEPSAAIDLAPPIGATERLLLLTPLVRAWK 124 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 +LP + L+ E + +P S A+AIWLA++LA ++D IETE W L L W Sbjct: 125 RRLPAHVAKLFAEE-IVIPASTADAIWLARDLAGLMDEIETEGTDWAKLEGLVTGNLAGW 183 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + +FL I + W + L E + S+P ++ AL+RAEA L + GP+I AGSTGSI Sbjct: 184 WQVTLEFLGIVTDAWPKFLEEQDRSNPAAHRSALIRAEAARLRRNPPAGPVIAAGSTGSI 243 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ +A P GAIVLPGLD + A + + HPQY LA+L Sbjct: 244 PATAELLAAIARLPGGAIVLPGLDRTLDEASFQALVAPGA-----RPAVLGHPQYGLARL 298 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + + R DV+ +G + R+ ++ ++ P +T+++ P+I F+DV Sbjct: 299 IGKIGVLRGDVEEIGVAEPRLALRAALVGEALRPAETTELWAETRNAFSAPDIAAAFADV 358 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 L+EA +ER+EA++IA+AL+ +++E +++AL+T DR LARRV +EL RFG+ D S G Sbjct: 359 TLLEAASERDEAVAIAVALKRAVEEPGQRAALVTGDRALARRVSVELKRFGVVADDSGGT 418 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PL+ + +S+L L A+F+ D + + +L+KHPL G + A +ELVALRG Sbjct: 419 PLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLCLGLGRADVRHAAELVELVALRGG 478 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 DI L L R+ + P W +RL+ E A L++ + + + PL ++ Sbjct: 479 TGRPDIASLPDLFETRLTGFDEGSRPPFWVARLTVRAIESARDLLERLNRALAPLAAFRG 538 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + ++ + +V L+ + L L+ + G+ L+ L ++ + + Sbjct: 539 QATA-----DLAALVEASVVALEVLGRAADGGLGELYAGDAGEKLAELLRGLVAAPATLS 593 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A EW D++ LI ETVKP + I G LE+RL + DTL++GGLNEGVWP+ Sbjct: 594 FAANEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDTLVIGGLNEGVWPRKPE 653 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + F+SR+M++ ++L+ E+ IG AAHDF+MA G ++ RS R + P + SRWLQRL Sbjct: 654 SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGKVLLARSARSGDAPAVPSRWLQRL 713 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L G D L++RG L W R LD KQ RP+P PPL +P +S +EI+ L Sbjct: 714 LTFIGNDQAATLRRRGDELLAWARALDTGPKQDFAPRPQPKPPLSVRPTHFSVTEIETLR 773 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 DPYAVYARRIL L + +DP +RGTLFH I+ + P+ + Sbjct: 774 RDPYAVYARRILGLMPLEPLIRDPGAAERGTLFHAILHLFSSSVADPRAPDALAGLIAAG 833 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + F + LPP ++ +W F K++ + +E E + I + K + G+ L Sbjct: 834 RACFAEAALPPDVEAVWWPRFEKLAANIVEWERTRADAVIRRHAEERAGKTVVGQSGVTL 893 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G+ADR+DLL G DI DYKTG +P K A L+ PQL+LE A L+ G+F + + + Sbjct: 894 SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGACEPS 953 Query: 959 NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 L +IRLK ++ + ++++ +A +L+E++ L +++ + + ++S Sbjct: 954 QLAFIRLKPNGEVFEESILEHNRQPRTASDLAEEAWARLEKLLIHYADPKTGYLSRALPF 1013 Query: 1016 EKSNIQSEYDHLARVAEWR 1034 + +YDHLARV EW Sbjct: 1014 REGETDGDYDHLARVLEWS 1032 >gi|254464697|ref|ZP_05078108.1| double-strand break repair protein AddB [Rhodobacterales bacterium Y4I] gi|206685605|gb|EDZ46087.1| double-strand break repair protein AddB [Rhodobacterales bacterium Y4I] Length = 977 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 269/1045 (25%), Positives = 438/1045 (41%), Gaps = 89/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + KP +F + + F R ++ L R L P LA + V T R + +R Sbjct: 5 PSVKPRLFAVPCGADFPRALVEGL-------RSRSQGLPPEALARAELIVNTSRMARRVR 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 S F + +LP + L D+ + L P + ++R LEL++LI + Sbjct: 58 SLF---DTGPAMLLPRMMLLTDLAQRATL------DGLPPALPPLRRRLELSQLIAKLLD 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD S A+ L+ +LA +ID ++ E + + AL W Sbjct: 109 AQPD-------------LASRASLYDLSDSLAALIDEMQGEGVSTDTIRALDVSDMSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA ++ L E + + ++ + K + P+I+AGSTGS Sbjct: 156 ARAQAFIGIADEF--TGLHEGAMDAQARQRQVVLNLIEQWQDKPPQHPVILAGSTGSRGT 213 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA+VLPG D P +W + + + HPQY KL+ Sbjct: 214 TLMLMQAIARLPQGAVVLPGFDFDQPGHVWAGLDDPMIS--------EDHPQYRFHKLMK 265 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L++ DV+ + R+ ++S + P +D ++ + + K ++ L Sbjct: 266 DLELTPGDVQPWTDTLPASPERNRLVSLALRPAPVTDAWMSE--GPLLTGLSKATENLTL 323 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 IEA + R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG PL Sbjct: 324 IEAPSPRAEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGQPL 382 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + K ++ TL+KHPL G R LEL R Sbjct: 383 QLSPPGRFLRHVAGLFCKPLACDSLLTLLKHPLTHDGADRGNHLRQTRELELSLRRNGPP 442 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + R + T ++ Sbjct: 443 FPDATAFAAFEKGRE------------------------------LTPGWTGWLSACFAD 472 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599 L ++DW + + LW ++ G+ + + E Sbjct: 473 QEIAETLPLTDWVNRLRDLAERIAAGSQADGSGTLWDKKAGQAALACIENLETEAPYGGG 532 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ + Sbjct: 533 MTARDFADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAAS 592 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R +++ L E+ IG +AHDF+ A + T + R T+ SRWL RL Sbjct: 593 PDPWLNRQLRNQAGLLLPERRIGLSAHDFQQAIAAPEVWLTHAERSEEADTVPSRWLNRL 652 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG D ++ +G+ +L W L+ T P Y RP P PP+ A+PR + Sbjct: 653 TNLLSGLPEQGGRAALDTMRSKGRRWLGWAEALEEPTPIPQYPRPSPCPPVAARPRRLTI 712 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI +LI DPYA+YA+ +L+L + ++PD RG + H + IK + Sbjct: 713 TEIPRLIRDPYAIYAKHVLRLKPLSPLVQEPDALLRGIVVHEVFEHFIKDAQTDPSLLTA 772 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + E P I+W KI+ F+ E++ Q+ + ++ Sbjct: 773 GHLIGKTRELLETHVPWPVARILWHSRIRKIAGDFVLAEQERQARARPVAFEAKGSARLD 832 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + ADRID+ GF+ + DYKTG P + QK + QL +EAA + G+F + Sbjct: 833 PLDFTIACRADRIDMDDRGFLHLYDYKTGTPPSEAQ-QKKFEKQLLIEAAMAEEGAFDDL 891 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA +I L K ++ E K L ++ Q + S Sbjct: 892 GPAEVARALFIGLGSK------LSEVAAPLQAEPPAKVWDELRTLIAAYFEPNQGYSSR- 944 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R+ + +I +YDHLAR EW Sbjct: 945 RMVHRDDIAGDYDHLARYGEWDRSA 969 >gi|85714149|ref|ZP_01045138.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A] gi|85699275|gb|EAQ37143.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A] Length = 1059 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 313/1057 (29%), Positives = 482/1057 (45%), Gaps = 42/1057 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V + S PF R +I AL++G L+E FR P LA VT+Y+PT+RA + R F++ Sbjct: 13 RVRNVPTSVPFLRTVITALVDGALIEGFRPR-AQPERLAEVTLYLPTRRAGRMARDIFLD 71 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-----LLLSYNLNPPVSNIQRLLELARLILIWRN 121 + + ILP I +LG + E++ + L P + + R L LARLI W Sbjct: 72 VLDNDAVILPRIVALGGIDEDELAFAQAVSLSPEALELPPALEGLARRLALARLIDAWAR 131 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 +L P + PA+ + LA++LA ++D + T W L L E +W Sbjct: 132 RLKPGEPSQAP----LVLGGPASTLALAEDLARLMDDMATRGVDWRALDGLVPEALDRYW 187 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 L DFLKIA +W L E P + L+ AEA L+ GP+I AGSTGS+P+ Sbjct: 188 QLTLDFLKIARDHWPIHLQETGRVEPGVRRDRLIEAEAARLVTHA-GPVIAAGSTGSMPS 246 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAKLL 300 TA+L+ +A P GA+VLPGLD + W I K + + HPQ++L LL Sbjct: 247 TAKLLHVIATLPQGAVVLPGLDTDLDEDAWQLIGGHKDKSGAFITLPAAGHPQFALHGLL 306 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDV 359 I R +VK LG YGR ++ S++ P + + +T + + ++ I ++ Sbjct: 307 TRFGITRREVKPLGA--PAPYGRELLASEAMRPSEATAQWHTRLAKPEVAEKIAAGLQNL 364 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A+I A N EA+ IA+A+R + + N K +AL+T DR LARRV L R+ ++ D S G Sbjct: 365 AVIAAANPEIEALGIAVAMREARELN-KTAALVTFDRALARRVMAALGRWNLSFDDSGGD 423 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PL T + A+ L+KHPL + G SRA LEL LRG Sbjct: 424 PLMDTPAGIFARLAAETACNGLEPPALLALLKHPLCRLGRAAGGWSRAVATLELAVLRGT 483 Query: 480 KNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + L + ++ H ++ L + A L+ + + Sbjct: 484 RPPPGSKGLADEFARFCGERDKLDRGENSSLHRSEPRAALKPHHLDEARHLIAALRDALA 543 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 PL + + S + + D+ + + G+ L+ F + Sbjct: 544 PLE-----GDGASRSADFSVLAAQHRQTIDALSHDDEGVAVA-FDGQHGRALADAFDDLR 597 Query: 593 ETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 ETG S + ++ D V+ +++L I G LE+RL D +ILGGLN Sbjct: 598 ETGERSGLTVRIADYPDTFEAAFGDRVVRRPQTTTASLRIYGPLEARLTQCDRVILGGLN 657 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EGVWP +P+LSR M+ DL L E+ IG +AHDF G +I + + + P Sbjct: 658 EGVWPPAPPTDPWLSRPMRHDLGLDLPERRIGLSAHDFTQLLGAEDVILSHAAKAGGSPA 717 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 +ASR+L RL + G + + G Y+ + LD + +P+P PP A+P Sbjct: 718 VASRFLHRLEAVAGATRWTAAIQAGARYIRYAEALDRPDQVTPVTKPEPKPPRAARPAHL 777 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + I+ + DPY +YA+ ILKL + DRG+ H+ + + K + Sbjct: 778 SVTAIEDWLRDPYTIYAKYILKLLPLDAVDMPLSAADRGSAIHDALGDFTKLYPANLPDD 837 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 +M+ I + HF P +W F +I+ F E E ++ + +I + K+ Sbjct: 838 PEDVMRAIGERHFAPLMQRPEARALWWPRFQRIAAWFAEWERTRRAHLVRIDAEVSGKIE 897 Query: 891 IESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I G L+ ADRI+ L G I DYKTG P + + + PQL+LE+A L+ G Sbjct: 898 IPIDGDRKFMLSARADRIEHLGGGRFAILDYKTGRPPSSKQVRIGLSPQLTLESAILRKG 957 Query: 948 SFSQIDC-RKVANLFYIRLKQKFKIDCI------TNDKKKYSADELSEKSLKNLIEIVTL 1000 F+ I V L Y+RL + K S DE ++++L+ L ++ Sbjct: 958 GFAGIPAGASVNELVYVRLSGNSQPGEACLVNLNNGKTDKQSPDEAADRALEELTALIRA 1017 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + +Q + S L L YD LAR+ EW Sbjct: 1018 FDDEQQGYPS-LDLPMWKTRYGVYDDLARIKEWSAAG 1053 >gi|254462109|ref|ZP_05075525.1| double-strand break repair protein AddB [Rhodobacterales bacterium HTCC2083] gi|206678698|gb|EDZ43185.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium HTCC2083] Length = 980 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 256/1045 (24%), Positives = 432/1045 (41%), Gaps = 86/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P +F + F + ++ +L+ R P +A + I V T R + + Sbjct: 4 AQETPRIFALGLGVDFPKALVKGVLD-------RTQNNAPTDIAQIQIIVNTARMRRRVS 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + FI K+ +LP I LG++ + + +S + R +E+ L+ Sbjct: 57 TLFI---DGKAKLLPQITLLGNIGKHPKFHA------IPQAISPLSRRIEIIALVDALLR 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + P S ++ LA +LA ++D ++ E ED+ L+ W Sbjct: 108 RNP-------------ALASRSSLFDLADSLAGLMDEMQGEGVPLEDISNLEVTDISGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A +F+ I ++ L ++ + + ++ A+ + P+I+AGSTGS Sbjct: 155 ARAQEFISIVGRFLD--LSQVRPDNEARARAVVLAQIADWQINPPTHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA LM ++ P GA++LPG D P +W E+ + HPQY A LL Sbjct: 213 TALLMEAISKLPQGAVILPGFDTDTPPEVW----EELIADHPTRMDPEDHPQYRFANLLK 268 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + + V + R+ V+S + P +D D + ++ V L Sbjct: 269 SLSMHPKTVPLWHDTPPVDTARNKVVSLALRPVPVTDGWLRD--GPNLGDLPSAMQHVTL 326 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +E REEA++IA+ LR + ++ K +ALIT DR L R+V L R+ I D SAG+PL Sbjct: 327 LEPQTSREEALAIAMRLRFAAEQ-GKTAALITPDRMLTRQVTAALDRWDIKPDDSAGLPL 385 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L +L + D A+ TL+KHPL G LEL + Sbjct: 386 QLSPPGRFLRHVLELFTRPLDAEALLTLLKHPLTHTGSERGTHLLLTRELELSIRKNGPA 445 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L + + + A +D + Sbjct: 446 FPTKDSLLAWA--------------------KDNKLDGAKSWIDWVANTFCG-------- 477 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKIIETGSCIK- 599 + G + + + + + + +LW E G+ S + + + Sbjct: 478 HLCDGPQNAVELAERHIGLAERISQGAQDVGTGDLWKEGAGREAMSQWVALRSNLDALPD 537 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + ++ D+ ++ V+ + I GTLE+R+ D LIL GLNEG WP+ + Sbjct: 538 LSTRDYADLFGGVLSRGEVRNPDAGHPNVLIWGTLEARVQGADLLILAGLNEGSWPEAPS 597 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M++D L E+ IG +AHDF+ A + TR+ R ++ T+ SRWL RL Sbjct: 598 PDPWLNRRMRADAGLLLPERRIGLSAHDFQQAIAAPEVWLTRAQRSDDAQTVPSRWLNRL 657 Query: 720 LVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L G + ++ RG +L+ +L+ KRP P P +E +P S Sbjct: 658 TNLMNGLPDQDGPVTIEQMQTRGNDWLERAHQLETPIGANPAKRPSPKPAIEVRPNQLSV 717 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK L+ DPY +YA+ +L+L + K D RG H + + ++ + E Sbjct: 718 TEIKTLVRDPYEIYAKHVLRLAPLDSLVKTADARLRGIAVHQVFEDFVRSW---DKGETA 774 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + F+ + P ++W +++ F+ E + Q + + + + Sbjct: 775 ADLMAHAKRIFDSDVDWPSARLMWAARIARLADDFVAEERERQKIAMSSRLEVKGESTLP 834 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G LT ADRIDL + G + DYKTG P K Q D QL LEAA + G F + Sbjct: 835 ELGFTLTVKADRIDLDERGGAYLYDYKTGAIPSKPQ-QLAFDMQLLLEAAMAERGDFDSL 893 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 R + Y+ + K D K + + L ++++ Q + F + Sbjct: 894 HPRHIEGATYLGVGSGTKSVEAPLDDKP------TAQVWAELYKLISDYQVSNKGFTAR- 946 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R EKS YD L+R EW E Sbjct: 947 RAMEKSKGFGRYDQLSRFGEWDETD 971 >gi|255262129|ref|ZP_05341471.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62] gi|255104464|gb|EET47138.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62] Length = 978 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 272/1049 (25%), Positives = 465/1049 (44%), Gaps = 92/1049 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + +VF I F + ++ L+ + L+ V +YV T+R + +R Sbjct: 2 TPRSHVFGIPCGVDFTQHLVDGLIER----------FDQDELSHVEVYVNTRRMQRRMRE 51 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + +LP IK + D+ + ++ ++ VS ++R LE++ L+ + Sbjct: 52 IF---DLGPARLLPQIKLVTDLARD------PVALDVPAAVSPLRRRLEISTLVSQLVDA 102 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PDI ++ L+ +LA++++ ++ E E + AL W Sbjct: 103 QPDIAAR-------------SSIFDLSDSLANLMEEMQGEGVDPETVAALDVSDQSGHWE 149 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241 A F +I +Y+ + Q ++ + PI++AGSTGS A Sbjct: 150 RALSFFQIVQRYFGDTYEPP---DGEARQRLVVDRLVDQWAASPPNSPIVVAGSTGSRGA 206 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T M+ VA P+G +VLPG D H+P IW + + T+ HPQY A+LL Sbjct: 207 TFDFMTAVAQLPHGMLVLPGFDAHLPDPIWRRLKDALTS--------EDHPQYRFARLLQ 258 Query: 302 FLDIKREDVKRLGNVSNEMY-GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L+I V S + R+ ++S S P +D + + ++++ + + Sbjct: 259 RLEIDPSAVDDWSVHSQRPHSDRNRLVSLSLRPAPVTDQWRIE--GREFEDLREVTAPLT 316 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA REEA++IA+ L+ + ++ ++K+ALIT DR L R+V L ++ I D SAG+P Sbjct: 317 LIEAFTPREEALAIALRLKKAAND-RQKAALITPDRMLGRQVTAALQQWDITPDDSAGLP 375 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGN 479 L T +L + + + + + TL+KHPL G LEL R Sbjct: 376 LQLTAPGRLLRHVASVLSRDMTSEILLTLLKHPLVHTGDPARGAHLLWTRELELYIRRNG 435 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 D L+ +R +++ + + ++ I ++ T Sbjct: 436 LPFPDAETLRQW----------------AHARDTDDGRVAWSEWIATVISSIEDTPSHTT 479 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CI 598 + +LS+++ + LW ++ G + + E + Sbjct: 480 LEQHYLTHLSLTEALA---------TGPNGQDTGELWLKDAGIEAAKICEMFSEHVAYSD 530 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A ++ D+ ++ G TV+ ++ + + ILGTLE+R+ + D +ILGGLN+GVWP+ Sbjct: 531 AMTAGDYADLFGSVLSGGTVRSSVKSNPLIRILGTLEARVNDADLVILGGLNDGVWPERP 590 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+L+R M+ L E+ IG +AHD++ A G + TRS+R ++ T+ SRW+ R Sbjct: 591 TPDPWLNRTMRDKAGLLLPERRIGLSAHDYQQAIGASEVWLTRSVRSDDSETVPSRWVNR 650 Query: 719 LLVLGGT-------DFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770 L+ L G D + RG ++++ R +D T +RP P PP+ A+P Sbjct: 651 LVNLLGGLPDQYGLDALKAMIARGDTWINYARAMDQPNTVTKPAQRPSPCPPISARPVQL 710 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + IK LI DPYAVYA ++L L + PD RGT H+I I++R + E Sbjct: 711 SVTRIKTLIRDPYAVYAEKVLGLRPLNPLTPSPDAPLRGTTMHSIFERFIRERGPETLEE 770 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + I + + + P I +W +I+ FL E K S + Sbjct: 771 ARTRLMTIARTVMDADTPWPTIREMWMARLDRIADQFLADEAKRVSIATPVLFEKQGGTR 830 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I+ +G LT ADR+D + + I DYKTG P + Q D QL LEAA ++ G F+ Sbjct: 831 IDHLGFTLTARADRMDQDDAQNIYIYDYKTGAAPT-KEQQTYFDKQLLLEAAMVERGGFA 889 Query: 951 Q-IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + + V YI L K+ + D + + ++T + ++ + Sbjct: 890 EWVGTSSVVQASYIGLGSDPKVTRAPLE------DNPTNAVWAEFVTLMTAWAHVDRGYT 943 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + R E+ S+YDHL+R EW D Sbjct: 944 AR-RAMEQDRFGSDYDHLSRFGEWDLTQD 971 >gi|254451971|ref|ZP_05065408.1| double-strand break repair protein AddB [Octadecabacter antarcticus 238] gi|198266377|gb|EDY90647.1| double-strand break repair protein AddB [Octadecabacter antarcticus 238] Length = 981 Score = 599 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 262/1049 (24%), Positives = 446/1049 (42%), Gaps = 91/1049 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 K P V+ + + F + L ++ ++P +A V IYV T+R + L Sbjct: 5 PMKIPRVYGVPLGADFSTTLYDGL-------RAAFETMSPADVAHVVIYVNTRRMQRRLT 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 S F + + +LP I+ + D+ ++ + P ++ ++R LE+A+L+ + Sbjct: 58 SLFHQ---GDALLLPRIRLVTDLAQDAVGRAIA------PSIAPLRRRLEVAQLVKGLID 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 P S AI LA +L ++ ++ E E + L W Sbjct: 109 ADP-------------TLASQDAAIDLADSLVALMSEMQGEGVAPEAIAGLDVTDQSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240 A F+++ +++ + G Q ++ + PII+AGSTGS Sbjct: 156 QRALSFIQLVQQFF-----ADDRLDGEGRQRLVIETLVDRWADTPPDHPIIVAGSTGSRG 210 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 AT+ M VA P GA++LPGLDC +P +W+ + +K HPQY Sbjct: 211 ATSLFMQAVAKLPQGAVILPGLDCDMPAHVWDMMEQKKGG--------EDHPQYRFKAFC 262 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D L I+ D+++ GN +N R+ +IS S P + D + + ++ + + + Sbjct: 263 DALSIQPSDIQQWGNTTNINAARTGLISLSLRPAPVTHQWIKD--GSDLGDLGEATNGIT 320 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA R +A +IA LR ++++ + +ALI+ DR L R+V L R+ I D SAG+P Sbjct: 321 LIEAPTPRAQADAIAARLRQAVED-GQTAALISPDRMLTRQVTASLDRWDITPDDSAGLP 379 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGN 479 L T L + + + D + L++HPL+ + NALEL R Sbjct: 380 LQLTAPGRFLRHIADLFCEPLDAERLLVLLRHPLSHSDRPDRGAHALRTNALELDLRRNG 439 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 L +T W + + Sbjct: 440 PPFPTAESLTKWAAATSDRHPEHTDWVAWVGSVLLGLCD--------------------- 478 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDE-HRKLPNLWFEEEGKTLSSLFSKIIET-GSC 597 + + D + + + LW + G+ + S++ + Sbjct: 479 -----TNDKPLIDHLTHHLGIAERLSAGPYLGGSGELWKKPAGREALRVMSELRAHSDAG 533 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 +A E+ +I ++ G V+ + + + I GTLE+R+ + D +IL GLNEG WP+ Sbjct: 534 GVMSAREYRRLIGSVLAGGEVRDRDDGHPQVLIWGTLEARVQSADLVILAGLNEGTWPEA 593 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 +P+L+R ++ L E+ IG +AHD++ A R ++ +R++R + T+ SRW+ Sbjct: 594 PTPDPWLNRPLRMQAGLLLPERRIGLSAHDYQQAVCAREVVLSRAVRSDEAETVPSRWIN 653 Query: 718 RLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRT 769 RL L GG + +++RGQ +L + RP P PP +A+P Sbjct: 654 RLTNLLGGLEDKGGPAYLKAMRERGQHWLTLAANIAAPTVTVDPAPRPSPCPPADARPDK 713 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S ++IK LI DPYA+YAR+IL L+ + PD RGT+ H ++ +K +I+ Sbjct: 714 LSVTQIKTLIRDPYAIYARKILGLNALDSLAHTPDAPLRGTIVHKVLERFVKDKIDPADS 773 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + I + P + +W + FL E+K + + + ++ Sbjct: 774 GARAALLSIASDVLIEHCPWPAVRALWFARIASFTPHFLIEEQKRRVFSANVDTEMRGEL 833 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + + LTG ADRID+ G I DYKT P QK D QL LEAA ++ G+F Sbjct: 834 KLAYLPFTLTGTADRIDMSDDGEALIYDYKTSKAPTSPQ-QKYFDKQLLLEAAMVERGAF 892 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + + YI L K D DE +++ ++ + + + Sbjct: 893 KALGRVRTKAAVYIGLGSDLKDQPAPLD------DETPDETWTRFEGLIAKWMDPTKGYT 946 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 S +E + + YDHLAR EW E +D Sbjct: 947 SR-SANEIMSFEGNYDHLARYGEWDETHD 974 >gi|92115689|ref|YP_575418.1| hypothetical protein Nham_0057 [Nitrobacter hamburgensis X14] gi|91798583|gb|ABE60958.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrobacter hamburgensis X14] Length = 1049 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 302/1055 (28%), Positives = 475/1055 (45%), Gaps = 38/1055 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V + S PF R +I AL++G L+E FR P LA T+Y+PT+RA + R F++ Sbjct: 2 RVRNVPTSVPFLRTVITALVDGALIEGFRPR-AQPERLAEATLYLPTRRAGRMARDIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + + ILP I +LGD+ E++ A + L P + + R L LA+LI W + Sbjct: 61 VLNVDAVILPRIVALGDIDEDELAFAQAASSAEALQLPPALDGLARRLALAQLIEAWARQ 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L P + PA+ + LA +LA ++D + T W L AL + +W Sbjct: 121 LKPGDPAQAP----LVLGGPASTLALADDLARLMDDMATRGVDWRALDALVPDALDKYWQ 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA YW L E P + L+ AEA L GP+I AGSTGS+P+T Sbjct: 177 LTLDFLKIARDYWPAHLEEAGRIEPAVRRDRLIDAEAARLAAHHGGPVIAAGSTGSMPST 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN-ITSSNTTYSTHPQYSLAKLLD 301 A+L+ +A P+GA+VLPGLD + W I + + HPQ++L LL Sbjct: 237 AKLLHVIARLPHGAVVLPGLDTDLDDEAWQLIGGMRDGNGAFTAPPAAGHPQFALHGLLR 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDVA 360 I R DV+ LG YGR M+ S++ P + + +T + E ++ I ++A Sbjct: 297 RFGIARRDVETLGV--PAPYGREMLTSEAMRPSEATARWHTRLAEPEVAEKIAAGMKNLA 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 +I A N EA+SIA A+R + + N K +AL+T DR LARRV L R+ + D S G Sbjct: 355 VIAAANPEVEALSIAAAMREARELN-KTAALVTFDRALARRVMAALGRWNLAFDDSGGDA 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + + + L+KHPL + G SRA LEL LRG + Sbjct: 414 LMDTPAGIFARLVAGTACNGLEPPTLLALLKHPLCRLGRVAGGWSRAVATLELAILRGTR 473 Query: 481 NSYDIMDLKSL-------VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 L + + ++ H ++ L + + L+ + + P Sbjct: 474 PPPGSKGLADEFARFCGELDKLDRGESSSLHRTEPRAALKLHRLDESRALIAALRDALAP 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592 L + + + + + + D+ + ++ + Sbjct: 534 LE-----GDGASRSADFTAFAAQHREAIDVLSRDDQGVAAAFEGQHGLALAAAFDDLRKA 588 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 S + ++ ++ V+ +++L I G LE+RL D +ILGGLNE Sbjct: 589 GERSGLTVKIADYPEVFETAFGDRIVRRPQATAASLRIYGPLEARLTQCDRVILGGLNES 648 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP +P+LSR M+ +L L E+ IG +AHDF G +I + + + P +A Sbjct: 649 VWPPAPPSDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGADDVILSHAAKAGGSPAVA 708 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 SR+L RL + G + + + G Y+ + +D + +P+P PP A+P S Sbjct: 709 SRFLHRLKAVAGPERWATALQAGTRYVQYAEAIDRPEQVTPVAQPEPKPPRAARPTRLSV 768 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + I+ + DPY +YA+ ILKL + DRG+ HN + + K+ Sbjct: 769 TAIEDWLRDPYTIYAKHILKLLPLEAVDMPLSAADRGSAIHNSLGDFTKQYPAALPENPA 828 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 +++ I +S F P +W F +I+ F E E+ + +E I I +++I Sbjct: 829 DVLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEQSRRPQLETIDAEIRGEISIP 888 Query: 893 ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 HL+ ADRI+ L G I DYKTG P + + + PQL+LE+A L+ G F Sbjct: 889 VASDRTFHLSARADRIEHLGDGRFTILDYKTGSPPSSKQVRLGLSPQLTLESAILREGGF 948 Query: 950 SQIDC-RKVANLFYIRLKQKFKIDCIT------NDKKKYSADELSEKSLKNLIEIVTLLQ 1002 I V+ L Y+RL S D+ ++++L+ L ++ Sbjct: 949 EGIPAGASVSELVYVRLSGNNPPGEPLQVNLDNGKTDMQSPDQAADRALEELNALIRAFD 1008 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 N +Q + S L L YD LAR+ EW Sbjct: 1009 NEQQGYPS-LDLPMWKTRYGAYDDLARIKEWSAAG 1042 >gi|260431945|ref|ZP_05785916.1| double-strand break repair protein AddB [Silicibacter lacuscaerulensis ITI-1157] gi|260415773|gb|EEX09032.1| double-strand break repair protein AddB [Silicibacter lacuscaerulensis ITI-1157] Length = 975 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 277/1046 (26%), Positives = 443/1046 (42%), Gaps = 90/1046 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF + P + F + ++ L R D P LA V + + T+R + +R Sbjct: 4 PGATPRVFAVPPGADFPQALVRGL-------RARSDGHPPEALARVQLVLNTRRMARRVR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + +LP I + D+ E + P V ++R LEL +L+ + Sbjct: 57 ELFDQ---GPPCLLPRISLVTDLGESV------DLDQVPPAVPPLRRRLELTQLVARLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + PD+ ++ L+ +LA +I+ ++ E E + L W Sbjct: 108 QQPDLAAR-------------SSLFGLSDSLAALIEEMQGEGVPPEAIRQLDVTDLSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240 A F+ IA ++ E + Q ++ + P+I+AGSTGS Sbjct: 155 ARAQAFIGIADQFLK---TEDGSLDVQARQRRVVENLIARWQDAPPQHPVILAGSTGSRG 211 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 T LM VA P GA++LPG D P +W + T+ HPQY KL+ Sbjct: 212 TTLMLMQAVARLPQGALILPGYDFDQPAHVWERLDSAMTS--------EDHPQYRFRKLM 263 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L I + + R+ ++S + P +D ++ ++ ++ D+ Sbjct: 264 TELGIGQAQIAAWTPDQPPSPARNRLVSLALRPAPITDAWMSE--GPQLRDLDAATRDIT 321 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 L+EA + R EA++IA+ LR + + + +ALIT DR L R+V L R+ I D SAG+P Sbjct: 322 LVEAQSPRAEALAIALRLRQAAE-TGQTAALITPDRMLTRQVSAALDRWNILPDDSAGLP 380 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L + L + D A+ TL+KHPL LEL R Sbjct: 381 LQLSPPGRFLRHVAGLFAHRLDAEALLTLLKHPLCHSAGDRGAHLLHSRDLELHLRRNGP 440 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D L + + L D Sbjct: 441 PFPDSASLSGFA--------------VEKDVPDTWARWLIRNFCDR-------------- 472 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599 G L ++DW + + + LW + G+ ++ S + E + Sbjct: 473 --QISGTLPLTDWVQRLRDLAEAIAGAGTGDAGELWDKNAGQAALAVISDLADEAEHGGE 530 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A+++ D++ L+ G+ V+ + + I GTLE+R+ D LILGGLNEG WP+ A Sbjct: 531 MTALDFADLLGALLAGQEVRDRDAPHPRIMIWGTLEARVQGADLLILGGLNEGSWPEAPA 590 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ IG +AHDF+ A G + TR++R ++ T+ SRWL RL Sbjct: 591 PDPWLNRQMRDRAGLLLPERRIGLSAHDFQQAIGAPEVWLTRAVRSDDAETVPSRWLNRL 650 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG + ++ RG+ +L W+ L+ + RP P PP+ A+PR S Sbjct: 651 TNLLQGLPDQGGRAALEQMRDRGKTWLRWSEMLEQAPRIAAAPRPSPRPPVAARPRRLSV 710 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YA+ IL+L + + PD RG + H I+ +K + Sbjct: 711 TEIKKLIRDPYAIYAKHILRLKPLDPLVQAPDALLRGIVIHEILEHFVKDSVLDGALLTR 770 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + ++ ++ P +W +I+ FL E +S I ++ +E Sbjct: 771 DNFLKRAEALLDQHVAWPTARKLWLARLERIADDFLRAEITRRSDGGPIAFEAKMRLTLE 830 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G L G ADRID G + I DYKTG P + Q D QL +EAA + G Sbjct: 831 PLGFTLNGRADRIDRNSRGALTIIDYKTGAPPSESQ-QAKFDKQLLIEAAMAEQGGIDGF 889 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 D VA+ +I + +K DK+ K L L E+++ +Q F S Sbjct: 890 DPMAVASAVFIGMGGTYKEVPAPLDKEPPD------KVLAELKELISAYLEPDQGFSSR- 942 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ K + +YDHLAR EW + Sbjct: 943 RMMHKDSDVGDYDHLARFGEWDRTAE 968 >gi|21328715|gb|AAM48721.1| conserved hypothetical protein [uncultured marine proteobacterium] Length = 972 Score = 597 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 258/1045 (24%), Positives = 426/1045 (40%), Gaps = 94/1045 (8%) Query: 1 MHNKKP--NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58 M +P VF F ++ L R P A V +YV T+R + Sbjct: 1 MFEDRPKFRVFGTYAGQAFPDTLLEGL-------TTRLQGAAPEDWARVEVYVNTRRMQR 53 Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 L F++ + ++P + ++ + +L PV ++R LE+A+L+ Sbjct: 54 RLAELFLQ---GPARLMPKFHLVTNLAHDPLLT------DLPMPVPTLKRRLEIAQLVRK 104 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 ++ + + LA +LA ++D ++ E + + L + Sbjct: 105 LIQRVEGLAP-------------ASAVFDLANSLAGLMDEMQGEGIAPDVIEGLDISDFS 151 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 W A F+ I +Y+ + +++ PI++AGSTGS Sbjct: 152 GHWERALQFISIVQRYFEGGEAPD---EEARQRASVLALTQRWQENPPDHPILVAGSTGS 208 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 T LM+ VA P GA+VLPG D +P +W +++ T+ HPQY ++ Sbjct: 209 RGTTFHLMTAVAGLPQGAVVLPGFDFDMPRRVWAQLSDPKTS--------EDHPQYRFSR 260 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL+ L++ + V + R+ ++S + P + + + + + D Sbjct: 261 LLNALELTSDHVIPWTAAEPQAAARNRLVSLALRPAPVTHHWRQE--GPHLTELDQATQD 318 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + +EA N+R EA +IA+ LR + + + +A+IT DRNL RR+ L + I D SAG Sbjct: 319 ITWLEAPNQRVEAKAIALRLRQAAEL-GQTAAVITPDRNLTRRISTALAAWNITPDDSAG 377 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 IPL+ T L +L+ + L+KHPL G R LEL R Sbjct: 378 IPLNLTAPGRFLLHVLDLAQSQLTSETLLVLLKHPLTHSGSERGQHLRNTRELELYLRRS 437 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 L H W ++ + Sbjct: 438 GPAFLTAQALLQWAE-------KENHYRPWVDWINANVFD-------------------- 470 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSC 597 G + W + + + LW + G+ + + + Sbjct: 471 ---QWPQGPQPLESWITHHRKLAEGLSAGLVGEDGELWEQAPGRDTKTEIENLTRYAPAA 527 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 I++ I+ ++ + + S + I GTLE+R+ + D +IL GLN+G WP+ Sbjct: 528 GDVELIDYTAILRGVLSAGQTRDQNHVHSNILIWGTLEARVQSADLVILAGLNDGTWPEP 587 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 A +P+L+R ++ L E+ IG +AHDF+ A G + + TRSLR ++ T+ SRWL Sbjct: 588 PAPDPWLNRSLRLQAGLLLPERRIGLSAHDFQQAIGAKTVWLTRSLRSDDAETVPSRWLN 647 Query: 718 RLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 R+ L + D+++ RG +L L+ P RP PP+ ++P Sbjct: 648 RIENLLNGLEKPDDASWMDHMRARGNEWLGKVEALEEPQVAPLSIRPSVAPPVASRPERL 707 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + ++IK LI DPYA+YA+R+L L + K PD RGTL H+++ +K N Sbjct: 708 AVTDIKHLIRDPYAIYAKRVLNLRRLDPLSKSPDAPLRGTLIHDLLEAFLKTGPWTNAEA 767 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + + F+ P +W + + F+ HE K Q+ I I + Sbjct: 768 AKATLLALAEERFQSTVPWPAARRMWLARVVRFAEWFVTHEMKRQARILSTKTEIEGDVN 827 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + L G ADRIDLL G I DYKTG P Q D QL LE L+ G F Sbjct: 828 LPELNFTLAGTADRIDLLNDGTAHIYDYKTGKPPSPAQ-QLHFDKQLLLEVEILRRGGFP 886 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + KVA YI L D+ + +++ Q+ EQ + + Sbjct: 887 GLGPLKVAGATYIGLDNAPSELPAPIDET---------DVWSDFSKLIXAYQSPEQGYAA 937 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWRE 1035 R K++ S+YDHLAR EW Sbjct: 938 R-RAMLKADDASDYDHLARYGEWST 961 >gi|319780205|ref|YP_004139681.1| double-strand break repair protein AddB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166093|gb|ADV09631.1| double-strand break repair protein AddB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1044 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 369/1039 (35%), Positives = 570/1039 (54%), Gaps = 23/1039 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR----S 62 VF+I P +PF + ALL G LV FR+D +PL LA TIYVPT+RA + LR Sbjct: 6 RVFSIPPGAPFLPTLAEALLAGRLVPGFRFDG-DPLALADATIYVPTRRAARALRGVFVD 64 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILIWR 120 G S ILP+I+ LG+ E++ + + +L PP+S +RLL L L+ W+ Sbjct: 65 SLAARGGGGSAILPVIRPLGEFDEDEAAFETEAAAAIDLAPPISATERLLLLTPLVRAWK 124 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 +LP + L+ E + +P S A+AIWLA++LA ++D IETE W L L W Sbjct: 125 RRLPAHVAALFAEE-IVIPASTADAIWLARDLARLMDEIETEGTDWAKLTDLVTGNLAGW 183 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 W + +FL I ++ W + L E + S+P ++ AL+RAEA L + GP+I AGSTGSI Sbjct: 184 WQVTLEFLGIVTEAWPKFLAESDRSNPAAHRSALIRAEAARLQRNPPAGPVIAAGSTGSI 243 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ +A P GAIVLPGLD + A + I HPQY LA+L Sbjct: 244 PATAELLAAIARLPGGAIVLPGLDRTLDEASFQAIAAPGA-----RPAVLGHPQYGLARL 298 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + + R DV+ +G R+ ++ ++ P +T+++ +I F++V Sbjct: 299 IGKIGVLRGDVEEIGVAEPRRALRAALVGEALRPAETTELWAETRAGFPASDIAGAFAEV 358 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 L+EA +ER+EA++IA+AL+ ++++ +++AL+T DR LARRV +EL RFG+ D S G Sbjct: 359 TLLEAASERDEAVAIAVALKRAVEQPGQRAALVTGDRALARRVSIELQRFGVVADDSGGT 418 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PL+ T +S+L L A+F+ D + + +L+KHPL G + A +ELVALRG Sbjct: 419 PLANTPAASLLRLALEALFRPGDPVGLLSLLKHPLLGLGLERADVRHAAELIELVALRGG 478 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 DI+ L L R+ + P W SRL+ E A L++ + Q + PL ++ Sbjct: 479 TGRPDIVSLPELFEARLTGLGGGSRQPFWFSRLTVRSIETARNLLERLKQALAPLAAFRG 538 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 ++ ++ + +V L+N+ L L+ + G+ L+ L ++ + + Sbjct: 539 RDDA-----DLAALVRASVVTLENLGRIADGGLGELYAGDAGEKLAELLRGLVAASASLS 593 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A EW DI+ LI ETVKP + I G LE+RL DTL++GGLNEGVWP+ Sbjct: 594 FAATEWPDIMAALIAPETVKPAQGTDRNIAIWGALEARLQTVDTLVIGGLNEGVWPRKPE 653 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + F+SR+M++ ++L+ E+ IG AAHDF+MA G ++ +RS R + P + SRWLQRL Sbjct: 654 SDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGKVVLSRSARAGDAPAVPSRWLQRL 713 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L G+D L++RG L W R LD +Q RP+P PPL +P +S +EI+ L Sbjct: 714 LTFIGSDQAAELRRRGDELLAWARALDAGPRQDFAPRPQPKPPLSVRPTHFSVTEIETLR 773 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 DPYAVYARRIL L + +DP +RGTLFH I+ + P+ + Sbjct: 774 RDPYAVYARRILGLMPLDPVIRDPGAAERGTLFHAILHLFSGSVADPRAPDALAGLIAAG 833 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP-AKMAIESIGIHL 898 + F + LP ++ +W F K++ + +E E ++ + K + G+ L Sbjct: 834 RACFAEAALPADVEAVWWPRFEKLAANIIEWERTRADAVTRRHAEERAGKTVVGQSGVTL 893 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G+ADR+DLL G DI DYKTG +P K A L+ PQL+LE A L+ G+F + R+ + Sbjct: 894 SGYADRVDLLAGGMADILDYKTGSSPSKAQAHTLLAPQLALEGALLRRGAFKDLGVREPS 953 Query: 959 NLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 L +IRLK ++ + ++++ +A +L+E++ L +++ + ++S Sbjct: 954 QLAFIRLKPNGEVFEESILEHNRQPRTATDLAEEAWARLEKLLIHYADPATGYLSRALPF 1013 Query: 1016 EKSNIQSEYDHLARVAEWR 1034 + +YDHLARV EW Sbjct: 1014 REGETDGDYDHLARVLEWS 1032 >gi|39933155|ref|NP_945431.1| hypothetical protein RPA0075 [Rhodopseudomonas palustris CGA009] gi|39652780|emb|CAE25519.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 1049 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 307/1057 (29%), Positives = 493/1057 (46%), Gaps = 42/1057 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 ++F++ S+PF R I AL++G LVE F P LA T+Y+PT+RA + R F++ Sbjct: 2 HLFSVPSSAPFLRTTIAALVDGRLVEGFEAR-AAPERLADATLYLPTRRAGRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + +LP I +LGD+ E++ A L + P + + R L LA+LI W + Sbjct: 61 VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLAQLIASWAAR 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L P + PA+A+ LA +LA +ID + T W L L + + +W Sbjct: 121 LKPDDPAQAP----LVVGGPASALALADDLARLIDDMSTRGVDWSALGTLVPDAFDRYWS 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA W + L E + P + L+ AEA+ L GP+I AGSTGS+PAT Sbjct: 177 LTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301 A+L++ + P+GA+VLPGLD + A W+ I + HPQY++ LLD Sbjct: 237 AKLLTAIVRLPHGAVVLPGLDIDLDNAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360 + + R DV++LG + +GR ++ S++ P + + + + + ++ + + + Sbjct: 297 RMGVTRRDVQQLG--TPARHGRELLSSEALRPSSATAVWHDRLKDAEVDRLIGEGTDGLT 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA N EA++IA+ LR + ++ K +AL+T DR LARRV L R+ + +D S G Sbjct: 355 LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + + + + L+KHPL + G A LEL LRG + Sbjct: 414 LMETQPGIFARLAAETVLEGCEPTTLLALLKHPLLRLGRAGYGWRGAIETLELALLRGPR 473 Query: 481 NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 L + + + + H ++RLSE + A L+ + + P Sbjct: 474 PPAGCDGLAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSLDEAQQLIAQLKAALAP 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L T N + + L+ + D+ ++ +G L F + Sbjct: 534 LETVGPNPLD------LCEIGAQHCAALKALTTDDDGI-AEVFEGPQGSALLRAFDDLAA 586 Query: 594 TGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 G + A ++ ++ V+ + + I G LE+RL D ++LGGL E Sbjct: 587 VGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVE 646 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GVWP +P+LSR M+ +L L E+ IG +AHDF A G + T + + P + Sbjct: 647 GVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKVGGAPAV 706 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASR+L RL + G D + +K RGQ YLD+T +LD +P P PP A+P Sbjct: 707 ASRFLHRLEAVAGEDRWKAMKARGQTYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLP 766 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + I+ + DPY +YA+ IL+L + DRG+ H + E ++ + + Sbjct: 767 VTAIEDWLRDPYTIYAKYILRLSPLDPVDMSLSGADRGSAIHAALGEFTERYQDALPDDP 826 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++QI HF +W F +I+ F E++ ++ + ++ + I Sbjct: 827 VTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQVQAERRGTLMI 886 Query: 892 ESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G L+ ADRI+ G I DYKTG P + + + PQL+LEAA L+ G Sbjct: 887 PLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGG 946 Query: 949 FSQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTL 1000 F I V+ L Y++L I + D+ ++++ L +V Sbjct: 947 FEDIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRR 1006 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 ++ +QP+ S L LS S YD LAR+ EW Sbjct: 1007 FEDEKQPYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042 >gi|126738528|ref|ZP_01754233.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6] gi|126720327|gb|EBA17033.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6] Length = 982 Score = 593 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 262/1048 (25%), Positives = 447/1048 (42%), Gaps = 88/1048 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 KP VF + F + + L+ R +P LA V + + T R + R Sbjct: 5 PQDKPRVFALPLGVDFPKALASGLIQ-------RNAKHSPENLARVELILNTARMARRTR 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F + +LP ++ L +VE A +L P + ++R LEL++LI Sbjct: 58 NLFE---AGPALLLPRMRLLSSLVETGVIA------DLPPALPPLRRRLELSQLIAKLLE 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ ++ L+ +LA +ID +++E E + L W Sbjct: 109 TQPDLAAR-------------SSLFDLSDSLAGLIDEMQSEGVNTEAIRNLDVSDMSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240 A F+ I ++ A Q L+ E + PI++AGSTGS Sbjct: 156 ARAQQFIGIVDQFIDLH---EGAVDAQARQRQLVHHLIESWEISPPQHPILLAGSTGSRG 212 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 T LM +A P GA++LPG D P +W+ + + ++ HPQY AKL+ Sbjct: 213 TTHILMEAIAKLPQGAVILPGYDFDQPLTVWSHLRDALSS--------EDHPQYRFAKLI 264 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 LD+ ED++ + R+ ++S + P ++ + ++ ++ + + Sbjct: 265 SDLDLDPEDIRPWTKTAPVSPARNRLVSLALRPAPVTNAWMQE--GPELQDLDSACAQIT 322 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 L+EA + R EA++IA+ LR + ++ + +ALI+ DR L R+V L R+ I D SAG+P Sbjct: 323 LVEAPSPRAEALAIALRLRQAAED-GQTAALISPDRMLTRQVSAALDRWDILPDDSAGLP 381 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRG 478 L T L + K A+ TL+KHPL R EL R Sbjct: 382 LQLTPPGRFLRHVAELFCKPLTSDALLTLLKHPLTHDGPNAERGEHLRHTRDFELNIRRN 441 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 D R + + D++ V + Q + Sbjct: 442 GPPFPDADSFYQFATGRDLLPGWVDWLADNFAAQEVSDRQALTNWVALLRQRAEAIAAGS 501 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSC 597 N + + LW ++ G+T +LF + + Sbjct: 502 QNLAA--------------------------GETGPLWEKKAGQTALALFEDLEAQALHG 535 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + +A ++ D++ ++ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ Sbjct: 536 GEMSARDFADLLGAILSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEA 595 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 +P+L+R ++ L E+ IG AAHDF+ A + TR+ R + T+ SRWL Sbjct: 596 AKPDPWLNRQLRHQAGLLLPERRIGLAAHDFQQAIAAPEVWLTRAARTDEADTVPSRWLN 655 Query: 718 RLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 RL L GG + RGQ +LDW L+ KRP P PP+ ++PR Sbjct: 656 RLTNLLAGLPDQGGKAALTGMLDRGQVWLDWAEALEAPAPADPAKRPSPQPPVPSRPRRL 715 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + +EI +LI DPYA+YA+ +L+L + ++PD RG + H + + IK + Sbjct: 716 TITEIPRLIRDPYAIYAKHVLRLRPLDPLVQEPDALLRGIVVHEVFEKFIKTCQDNPEGL 775 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + D ++ P ++W K++ F+ E++ Q+ + + Sbjct: 776 TAANLTAMADELLQEHVPWPVARLLWHSRIEKLAEDFVTGEKERQNRARPVAFEAKGEAR 835 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 +E + + ADRID + GF+ + DYKTG P + QK + QL +EAA + G+F Sbjct: 836 LEPLDFTIACRADRIDQDERGFLHLYDYKTGAPPSEAQ-QKKFEKQLLIEAAMAEEGAFK 894 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + VA+ ++ + K +E K + L +++ + Q + S Sbjct: 895 DLGPADVASAAFLGIGSSLKEVAAPLS------EEPPAKIWEELKKLIEAYFDPNQGYSS 948 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 R+ + ++ +YDHLAR EW + Sbjct: 949 R-RMVHRDDLAGDYDHLARFGEWDRAAE 975 >gi|149201425|ref|ZP_01878400.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035] gi|149145758|gb|EDM33784.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035] Length = 979 Score = 593 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 258/1045 (24%), Positives = 444/1045 (42%), Gaps = 87/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P ++ + P F R ++ L + P LA V + V T+R + +R Sbjct: 4 PSDTPRLYGVPPGVDFPRALVEGLRAH-------HAGKPPEALARVQLIVNTRRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F +LP I L D+ E L ++ PV ++R LEL +LI + Sbjct: 57 ELF---DAGPPCLLPRISLLTDLGE------LWDLAHIPDPVPPLRRRLELVQLIATLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ + L+ +LA ++D + E + + L W Sbjct: 108 NAPDLAPR-------------SAIYDLSDSLAGLMDEMHGEGVAPQAIETLDITDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL I Y+ + + ++ + R A P+I+AGSTGS A Sbjct: 155 ARIKSFLGIVRHYFEIGGAAPDVET--RQRLVIERLAALWADTPPAHPVILAGSTGSRGA 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D +P +W+ + + + HPQY ++ Sbjct: 213 TQHLMQAVARLPQGAVVLPGFDFEMPAPVWDALGDAMLS--------EDHPQYRFCRVAA 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 I D++ ++S R+ ++S + P +D D + +I ++V L Sbjct: 265 GAGITPADIRPWSDISPANPARNALVSLALRPAPVTDQWLRD--GPHLRDIAGAMANVTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA ++R+EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG+PL Sbjct: 323 VEAPSQRQEALAIALRLRQAAED-GRTAALITPDRTLTRQVTAALDRWDILPDDSAGLPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + ++ TL+KHPLA G R LEL R Sbjct: 382 HLSPPGRFLRHVADLFRTRLSAESLLTLLKHPLAHQGAERGPHLRLTRELELHLRRHGPP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L+ +++ LA V+ + C Sbjct: 442 YPTEESLRLWA--------------------ADQKDPLAPEWVNWLCACF--------VN 473 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599 G + + + + + H LW ++ G+ +++ E Sbjct: 474 RDYSGEIPLDHSVATHLDLAEKIAQGCHGTGSGTLWLKDAGQEAQKAVTELRAEAHHAGA 533 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ + +++ V+ ++ + I GTLE+R+ D LIL GLNEG WP++ Sbjct: 534 LSASDYSSLFHKILSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPESPK 593 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ + L E+ IG +AHDF+ A + TRS+R + T+ SRWL R+ Sbjct: 594 PDPWLNRALRHQVGLLLPERRIGLSAHDFQQAIAAPEVWLTRSVRSADAETVVSRWLNRI 653 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L L GG ++++ RG+ +LD L+ + P RP P PP+ +P + Sbjct: 654 LNLLSGLPDQGGQAAIEDMRNRGRLWLDRATALEDPGEVPRATRPAPAPPVAVRPDHLTV 713 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YAR ILKL + + PD RGT+ H I+ I++ ++ + Sbjct: 714 TEIKRLIRDPYAIYARHILKLRPLDPLMRAPDALLRGTVLHEILEGFIRETLDHPEHCDH 773 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + ++ + +W +++ F++ E + ++ + + + Sbjct: 774 ATLMRHAETVLAENVPWAEARALWLARLDRVADWFIDTEARRRTLARPVHFEAKGRATLP 833 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G L+ ADR+DL G + I DYKTG P + Q D QL LEAA F + Sbjct: 834 DLGFTLSAKADRLDLDDLGQLHIYDYKTGAPPSTKE-QTSFDKQLLLEAAIATRSGFEGM 892 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA +I L + K D + EK +++ + + + + Sbjct: 893 GPTRVARAVFIGLGSEPKELDAPLDTEPP------EKIWAEFHALISAYFDPDMGYTARR 946 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 ++ +YD LAR EW + Sbjct: 947 AP-RNADEDGDYDQLARYGEWDQTD 970 >gi|192288511|ref|YP_001989116.1| double-strand break repair protein AddB [Rhodopseudomonas palustris TIE-1] gi|192282260|gb|ACE98640.1| double-strand break repair protein AddB [Rhodopseudomonas palustris TIE-1] Length = 1049 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 307/1057 (29%), Positives = 491/1057 (46%), Gaps = 42/1057 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 ++F++ S+PF R I AL++G LVE F P LA T+Y+PT+RA + R F++ Sbjct: 2 HLFSVPSSAPFLRTTIAALVDGRLVEGFDVR-TAPERLADATLYLPTRRAGRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFT----ADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + +LP I +LGD+ E++ A L + P + + R L L +LI W + Sbjct: 61 VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLTQLIASWAAR 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L P + PA+A+ LA +LA +ID + T W L L + + +W Sbjct: 121 LKPD----DPTQAPLVVGGPASALALADDLARLIDDMSTRGVDWSALETLVPDAFDRYWS 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA W + L E + P + L+ AEA+ L GP+I AGSTGS+PAT Sbjct: 177 LTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301 A+L++ +A P+GA+VLPGLD + A W+ I + HPQY++ LLD Sbjct: 237 AKLLTAIARLPHGAVVLPGLDIDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360 + + R DV++LG + +GR ++ S++ P + + + + + ++ + + + Sbjct: 297 RMGVTRRDVQQLG--TPARHGRELLSSEALRPSSATAVWHDRLKDAEVDRLIGEGTDGLT 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA N EA++IA+ LR + ++ K +AL+T DR LARRV L R+ + +D S G Sbjct: 355 LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + + L+KHPL + G A LEL LRG + Sbjct: 414 LMETQPGIFARLAAETALDGCEPATLLALLKHPLLRLGRTGYGWRGAIETLELALLRGPR 473 Query: 481 NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 S L + + + + H ++RLSE + A L+ + + P Sbjct: 474 PSAGCDGLAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSLDEAQDLIAQLKAALAP 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L T N + + L+ + D+ ++ +G L F + Sbjct: 534 LETVGPNPLD------LCEIGARHCAALKALTTDDEGI-AEVFEGPQGSALLRAFDDLAA 586 Query: 594 TGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 G + A ++ ++ V+ + + I G LE+RL D ++LGGL E Sbjct: 587 VGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVE 646 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GVWP +P+LSR M+ +L L E+ IG +AHDF A G + T + + P + Sbjct: 647 GVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKVGGAPAV 706 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASR+L RL + G D + +K RGQ YLD+T +LD +P P PP A+P Sbjct: 707 ASRFLHRLEAVAGEDRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLP 766 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + I+ + DPY +YA+ IL+L + DRG+ H + E ++ + + Sbjct: 767 VTAIEDWLRDPYTIYAKYILRLSPLDPVDMPLSGADRGSAIHAALGEFTERYQDALPDDP 826 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++QI HF +W F +I+ F E++ ++ + ++ + I Sbjct: 827 VTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQVQAERRGTLMI 886 Query: 892 ESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G L+ ADRI+ G I DYKTG P + + + PQL+LEAA L+ G Sbjct: 887 PLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGG 946 Query: 949 FSQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTL 1000 F I V+ L Y++L I + D+ ++++ L +V Sbjct: 947 FEDIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRR 1006 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 ++ +Q + S L LS S YD LAR+ EW Sbjct: 1007 FEDEKQSYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042 >gi|163738015|ref|ZP_02145431.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis BS107] gi|161388631|gb|EDQ12984.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis BS107] Length = 977 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 267/1045 (25%), Positives = 444/1045 (42%), Gaps = 89/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F + F R ++ L+ R + +P LA V V T R + +R Sbjct: 5 PQDTPRLFAVPCGVDFPRALVDGLVA-------RSENTSPEELAKVEFIVNTSRMARRVR 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + + +LP I L D+ L P + ++R LEL++LI Sbjct: 58 DLFDQ---GPALLLPRISLLSDLDMRATLR------GLPPALPPLRRRLELSQLIAKLLE 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ ++ L+ +LA + D ++ E E + +L W Sbjct: 109 AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSPETIRSLDVSDMSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA ++ E + + ++ E + P+I+AGSTGS Sbjct: 156 ARAQQFIAIADEF--AETHEHAMDAQARQRQVVLDLIEEWQDSPPQHPVILAGSTGSRGT 213 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA++LPG D P +W + + + HPQY K++ Sbjct: 214 TLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPLMS--------EDHPQYRFFKIMR 265 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ + V+ + R+ ++S + P +D + ++ +I + +DV+L Sbjct: 266 DLDMTPDQVRPWVDAIPASMARNRLVSLALRPAPVTDAWMRE--GPELRDIDQATADVSL 323 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA N R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG PL Sbjct: 324 VEAPNPRAEALAIALRLRKAAED-GQTAALITPDRMLTRQVAAALDRWDILPDDSAGQPL 382 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + K + TL+KHPL G R LEL R Sbjct: 383 QLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGAGRGDHLRHTRELELRLRRYGPP 442 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + ++ T +T Sbjct: 443 FPDPDSFAAF------------------------------EIGRELMPGWTAWLTQCFAD 472 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIK 599 G +S W + + LW ++ G+ + + + E G + Sbjct: 473 KPISGTQPLSQWVDALRNLAEAISRGSQNAADGGLWDKKAGRKALEIVNNLQAEAGYGGQ 532 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ Sbjct: 533 MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAAT 592 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ L E+ IG +AHDF+ A + TRS R + T+ SRWL R+ Sbjct: 593 PDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRSERSDEADTVPSRWLNRM 652 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG +++ RGQ +L W L+ T P KRP P PP+ A+PR + Sbjct: 653 TNLLSGLPGQGGPAALADMRARGQEWLGWAEVLEAPTSLPPAKRPAPRPPVAARPRRLTI 712 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI +LI DPYA+YA+ +LKL + ++PD RG + H I+ + IK + Sbjct: 713 TEIPRLIRDPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKASVTDPKRLTV 772 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 +H E + P +W +I+ F+ E++ Q+ + + + + Sbjct: 773 PDFLTTATAHLEAKVPWPVARSLWLARLERIAEDFITGEQQRQAIAQPSGFEVSGTVRVA 832 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + G ADRID+ + G + + DYKTGD P + QK + QL +EAA + G+F + Sbjct: 833 PLDFEIAGTADRIDVDERGGLHLFDYKTGDPPTESQ-QKTFEKQLLIEAAMAERGAFERY 891 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +V ++ LK + DE K + L ++++ +Q + S Sbjct: 892 GEGRVERALFLGLKSP------LKEVAAPLLDEPPSKVWEELTKLISAYFEPDQGYSSR- 944 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R+ + +YDHLAR EW Sbjct: 945 RMVFQDTQTGDYDHLARYGEWDRSD 969 >gi|163742589|ref|ZP_02149975.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10] gi|161384174|gb|EDQ08557.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10] Length = 977 Score = 592 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 267/1045 (25%), Positives = 445/1045 (42%), Gaps = 89/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F + F R ++ L+ R +P LA V + V T R + +R Sbjct: 5 PQDTPRLFAVPCGVDFPRALVDGLVA-------RSQNTSPEELAKVELIVNTSRMARRVR 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + + +LP I L D+ L P + ++R LEL++LI Sbjct: 58 DLFDQ---GPALLLPRISLLSDLDMRATLR------GLPPALPPLRRRLELSQLIAKLLE 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ ++ L+ +LA + D ++ E E + +L W Sbjct: 109 AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSPEIIRSLDVSDMSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA ++ E + + ++ E + P+I+AGSTGS Sbjct: 156 ARAQQFIAIADEF--AETHEHAMDAQARQRQVVLDLIEEWQDSPPQHPVILAGSTGSRGT 213 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA++LPG D P +W + + + HPQY K++ Sbjct: 214 TLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPLMS--------EDHPQYRFFKIMR 265 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ + V+ + R+ ++S + P +D + ++ +I + +DV+L Sbjct: 266 DLDMTPDQVRPWVDAIPASMARNRLVSLALRPAPVTDAWMRE--GPELRDIDQATADVSL 323 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA N R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG PL Sbjct: 324 VEAPNPRAEALAIALRLRKAAED-GQTAALITPDRMLTRQVAAALDRWDILPDDSAGQPL 382 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + K + TL+KHPL G R LEL R Sbjct: 383 QLSPPGRFLRHIAELFCKPLACDTLLTLLKHPLCHDGVGRGDHLRHTRELELRLRRYGPP 442 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + ++ T +T + Sbjct: 443 FPDPDSFAAF------------------------------EIGRELMPGWTAWLTQCFAE 472 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIK 599 G +S W + + LW ++ G+ + + + E G + Sbjct: 473 KPISGTQPLSQWIDALRNLAEAISRGSQNAADGGLWDKKAGRKALEIINNLQAEAGYGGQ 532 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ Sbjct: 533 MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPEAAT 592 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ L E+ IG +AHDF+ A + TRS R + T+ SRWL R+ Sbjct: 593 PDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRSERSDEADTVPSRWLNRI 652 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG +++ RGQ +L W L+ T P KRP P PP+ A+PR + Sbjct: 653 TNLLSGLPGQGGPAALADMRARGQEWLGWAEVLEAPTSLPPAKRPAPRPPVAARPRRLTI 712 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI +LI DPYA+YA+ +LKL + ++PD RG + H I+ + IK + Sbjct: 713 TEIPRLIRDPYAIYAKHVLKLRPLDPLVQEPDALLRGIVLHKILEDFIKASVTDPKRLTV 772 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 +H E + P +W +I+ F+ E++ Q+ + + + + Sbjct: 773 PDFLTTATAHLEAKVPWPVARSLWLARLERIAEDFITGEQQRQAIAQPSGFEVSGAVRVA 832 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + G ADRID+ + G + + DYKTGD P + QK + QL +EAA + G+F + Sbjct: 833 PLDFEIAGTADRIDVDERGGLHLFDYKTGDPPTESQ-QKTFEKQLLIEAAMAERGAFERY 891 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +V ++ LK + DE K + L ++++ +Q + S Sbjct: 892 GEGRVERALFLGLKSP------LKEVAAPLLDEPPSKVWEELTKLISAYFEPDQGYSSR- 944 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R+ + +YDHLAR EW Sbjct: 945 RMVFQDTQTGDYDHLARYGEWDRSD 969 >gi|163757507|ref|ZP_02164596.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43] gi|162285009|gb|EDQ35291.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43] Length = 1068 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 383/1063 (36%), Positives = 569/1063 (53%), Gaps = 28/1063 (2%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M P++ TI P +PF ++ + G L++ Y P +PL LA TI+VPT+RA + L Sbjct: 1 MTRSAPHIVTIPPGAPFLSVLVEKIHGGGLIDGLAYRPEDPLSLARATIFVPTRRAARAL 60 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS--YNLNPPVSNIQRLLELARLILI 118 RSE + G S ILP I+ LG+ E+ D +L+P + L LA L+L Sbjct: 61 RSELTDRIGVGSAILPSIRPLGETDEDAGFFDSADPATLSLDPAIPQTAATLRLADLVLA 120 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 W+ LP + D +PL P +PA+AIWL ++L D+I +ETEE + L + +E Sbjct: 121 WKKALPRAVLDHLGGAPLVAPANPADAIWLGRSLFDLIQAVETEECDFAGLDQVVSEDLQ 180 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237 WW L +FL IA +YW L E++ SSP G+ A++ L P+I+AGSTG Sbjct: 181 QWWQLTREFLAIAREYWPALLTEISRSSPAGHHNAMIDVFTRALTTDPEDRPVIVAGSTG 240 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT------EKSTNITSSNTTYSTH 291 + P+TARL++ +A+ P GA+VLPGLD + + W + S + +H Sbjct: 241 TRPSTARLIAAIAHLPRGAVVLPGLDHAMGLSHWQDLAKSVSVTAPPGTPVSFDPAARSH 300 Query: 292 PQYSLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 PQY L +LL+ + + + + M R +S + LP T++ Sbjct: 301 PQYGLLRLLESCGVDIASLGDIPEIAMLEGAMEVRRAAVSAALLPAGTTEAWGEPGFLPD 360 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS----ALITADRNLARRVKL 404 + + F+ V+LIEA NEREEA ++A A+R +L+ K + AL+T DRNLARRV + Sbjct: 361 ASALSQAFASVSLIEAANEREEAAALAAAMRQALEPGSKSAEPVVALVTPDRNLARRVVV 420 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 EL R+GI + S GIPL ++ ++ + F D +AI L+KHPLA+FG ++ Sbjct: 421 ELQRYGIEANDSGGIPLMSSPQGGLVRLAVQVAFAPGDAVAITALIKHPLARFGLDQQSA 480 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + +E +ALRG D+ L++LV +R + H W +R+S++D E A Sbjct: 481 QQLAGIVERIALRGGSGEADVDQLETLVAERS-EARKKPHAARWLTRISDQDAEAARDFA 539 Query: 525 DHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + ++PL + + I LT L+ +C DE L LW +E G+ Sbjct: 540 ARVADALSPLTSILVEAPGQRFSNAVDIGGLAGLTAETLEKICSDETGSLEPLWGDEAGE 599 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 LS++ + ++GS + EWI + LI G VKP+ FI G LE+RL + D Sbjct: 600 VLSNILLETRDSGSTLTITGHEWIGALDALISGRMVKPRTGGHPRAFIWGALEARLQHVD 659 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 T++LG LNEGVWP+ ++PFLSR M++ + L+ E+ IGQAAHDF+MA G ++ +R+ Sbjct: 660 TILLGALNEGVWPQAGQEDPFLSRSMKAAMGLEPPERRIGQAAHDFQMAMGAPQVVLSRA 719 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 R PT+ASRWLQRLL + G+D L+ RG LD R LD T RP+P PP Sbjct: 720 NRSGKAPTVASRWLQRLLAVAGSDTATALRHRGDALLDHVRSLDQATPVSPAIRPEPKPP 779 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + QP++YSFSE+ L DPYA+YARR+L+LD + F DP +RGTL+H I+ + I Sbjct: 780 AQMQPQSYSFSEVATLRRDPYAIYARRVLRLDPLEPFLTDPGPRERGTLYHAILEQFIAS 839 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 R + +++I +HF LP +IW+ F K + + E I S + Sbjct: 840 RAPGD--RTLEALREIAAAHFLDAELPDATALIWQSRFDKAAAAIAGWEAGIASGHGRSV 897 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 V A + + GI LTG ADRIDL G I DYKTG P ++ A+ L+DPQL+LEA Sbjct: 898 VEARASLEMPLAGIRLTGMADRIDLRADGTAWIIDYKTGGTPSRKQARTLLDPQLALEAH 957 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLI 995 AL+ G F+ + + L Y+RL K + + DEL++K+ L Sbjct: 958 ALRQGGFADLGALPASALLYLRLTGKDPFAERVDNDPEKPGRDEFLNPDELAQKAADELT 1017 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 +VTLL++G++ F+S + +YDHLARVAEW+ D Sbjct: 1018 WLVTLLRSGKRGFLSRAIPKSVRDFAGDYDHLARVAEWQTVVD 1060 >gi|254477674|ref|ZP_05091060.1| double-strand break repair protein AddB [Ruegeria sp. R11] gi|214031917|gb|EEB72752.1| double-strand break repair protein AddB [Ruegeria sp. R11] Length = 977 Score = 589 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 269/1045 (25%), Positives = 438/1045 (41%), Gaps = 89/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F++ F R ++ ++ R P LA + V T R + +R Sbjct: 5 PQDTPRLFSVPCGVDFPRALVQGMIE-------RASGQPPEALAKAELIVNTSRMARRVR 57 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F S +LP I L D+ L P + ++R LEL++L+ Sbjct: 58 DLFDR---GPSVLLPKISLLTDLDLRATLR------GLPPALPPLRRRLELSQLVAKLLE 108 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ ++ L+ +LA + D ++ E + + AL W Sbjct: 109 AQPDLAAR-------------SSLYDLSDSLAALFDEMQGEGVSTDTIRALDVSDMSGHW 155 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA + E + A++ AE + PII+AGSTGS Sbjct: 156 ARAQQFIAIADDF--ATTHENAMDPQERQRQAVLDLIAEWDETPPQHPIILAGSTGSRGT 213 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA+VLPG D P +W T+++ ++ HPQY KL+ Sbjct: 214 TLLLMEAIAKLPQGAVVLPGFDEDQPDHVWQTLSDALSS--------EDHPQYRFFKLMQ 265 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L++ DV+R + + R+ ++S + P +D + ++ +I S++ L Sbjct: 266 DLEMGPRDVRRWTDANPASTPRNRLVSLALRPAPVTDAWMRE--GPQLRDIDSATSEITL 323 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG PL Sbjct: 324 VEAPGPRAEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGQPL 382 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + K A+ TL+KHPL G R LEL R Sbjct: 383 QLSPPGRFLRHVAELFCKPLQTDALLTLLKHPLCHDGAGRGDHLRHTRDLELRLRRYGPP 442 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + R +L D + C Sbjct: 443 FPDHDSFAAFAVGR----------------------DLMPGWTDWLASCFAD-------- 472 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKI-IETGSCIK 599 +T G +S+W + + LW ++ G+ + + E Sbjct: 473 KTTQGERHLSEWVSQLRDLAETISKGSQPAEAGGLWDKKAGREALKVIENLQAEAPYGGA 532 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ A Sbjct: 533 MTARDFADLLRALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGTWPEAAA 592 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ L E+ IG +AHDF+ A + TR+ R + T+ SRWL R+ Sbjct: 593 PDPWLNRQLRHKAGLLLPERRIGLSAHDFQQAIAAPEVWLTRAERTDEADTVPSRWLNRM 652 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L GG +K RGQ +L L+ +RP P PP+ A+P+ + Sbjct: 653 TNLLSGLPDQGGPGALSAMKARGQMWLGRAEALEAPKPLAPAQRPAPRPPIAARPKRLTI 712 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI +LI DPYA+YA+ +L+L + ++PD RG + H I+ + +K + Sbjct: 713 TEIPRLIRDPYAIYAKHVLRLRPLDPLVQEPDALLRGIVLHKILEDFVKGTLEDPKTLTV 772 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 E + P +W+ +I+ F+ E Q+ + K+ + Sbjct: 773 DHFLTCAAEQLEAQVPWPVARALWQARLERIAEDFIAGERNRQARARPSGFEVSGKVRVT 832 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + G ADRID+ + G + + DYKTGD P + QK + QL +EAA + G+F Sbjct: 833 PHDFEIAGTADRIDVDERGGLHLFDYKTGDPPSENQ-QKAFEKQLLIEAAMAEHGAFETY 891 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +V ++ LK K DE K + L +++ EQ + S Sbjct: 892 GEGRVERALFLGLKAPLKEVPAPL------QDEPPAKVWEELSKLIGAYFEPEQGYSSR- 944 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R+ + + +YDHLAR EW Sbjct: 945 RMVFQDSQIGDYDHLARYGEWDRSA 969 >gi|110635906|ref|YP_676114.1| DNA helicase/exodeoxyribonuclease V, subunit B [Mesorhizobium sp. BNC1] gi|110286890|gb|ABG64949.1| DNA helicase/exodeoxyribonuclease V, subunit B [Chelativorans sp. BNC1] Length = 1042 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 370/1048 (35%), Positives = 561/1048 (53%), Gaps = 23/1048 (2%) Query: 1 MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58 M ++ P VF+I P PF + ALL G LV FRYD +PL LA TIY+PT+RA + Sbjct: 1 MSTERNSPRVFSIPPGVPFLPALADALLQGRLVPGFRYDG-DPLSLADATIYLPTRRAAR 59 Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVE---EKFTADLLLSYNLNPPVSNIQRLLELARL 115 ELRS F++ G S ILP+I+ LG+ + + PP+ + R+L L L Sbjct: 60 ELRSVFVDRLGGVSAILPVIRPLGEFEAELADLSDEGGAAQLDHAPPIPKLDRILLLGSL 119 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 W+ ++P + + E + +P S ++ +WLA++LA ++D IETEE W L L E Sbjct: 120 AQAWKARVPAHVAARFEEG-VIVPASLSDGLWLARDLAALMDEIETEEGDWSRLAELVPE 178 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAG 234 + WW + +FL I ++ W E L E + S+P ++ A++ AEA L +GP+I AG Sbjct: 179 ELAGWWQVMLEFLNIVTRAWPELLAERDRSNPATHRNAMLAAEAARLMRTPPRGPVIAAG 238 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 STGSIPATARL+ T+A NGA+VLPGLD ++ W + + HPQ+ Sbjct: 239 STGSIPATARLLGTIARLENGAVVLPGLDLNLDEDSWRAVGA------IEGPSACGHPQF 292 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 L KL+ + + R V L + E+ R ++S++ P DT+D+ + Q Sbjct: 293 GLRKLIGTIGVARAQVLELAAPAPELAARRQLLSEAMRPADTTDLWALNRSMVDRALSQG 352 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 + V+LIEA NER+EA +IA+ALR ++ +AL+T +R LARRV EL RFGI D Sbjct: 353 ALAGVSLIEAANERDEAAAIAVALRHAIAREGTTAALVTPNRTLARRVAAELKRFGIRAD 412 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 S G L+ ++ +++L +L AI + + + I L+KHPL + G P + + RA +EL+ Sbjct: 413 DSGGSLLADSVPATLLRLMLEAICRPKEPVVIVGLLKHPLLRLGLPRERVRRAAEVIELM 472 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 ALRG D+ L SL R + P W SRLS D A ++ + Q I PL Sbjct: 473 ALRGGTGRPDVATLSSLFAQRHDAMMRDPRKPFWLSRLSASDIAEARQVLAALEQAIVPL 532 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + +S + +V + + DE L L+ E G+ L+ ++E Sbjct: 533 SSLREAAAV-----GLSLLARASVEAFEALARDEDGTLNELYRGEAGEALARFLRDLVEC 587 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + KA EW D+ L+ GE VKP + + I G LE+RL + D L+LGGLNEG W Sbjct: 588 RTGTKAEISEWPDVFAALMAGEVVKPAMGADQRIAIWGALEARLQSVDMLVLGGLNEGTW 647 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P+ + F+SR+M+ +L L+ E+ IG AAHDF MA G ++ RS R + P +ASR Sbjct: 648 PEAPRSDRFMSRLMKGELKLEPPERRIGLAAHDFMMAFGAPQVVLARSTRSESAPAVASR 707 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 WLQRL G ++ RGQ ++ W L+ P RP P PPLEA+P+ +S +E Sbjct: 708 WLQRLAACAGPSETAAMRARGQRFIAWAHALEARDDVPFAPRPCPRPPLEARPKRFSVTE 767 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 I+ L DPYAVYARRILKL + +DP +RGTLFH+I+ I+ + + P+ Sbjct: 768 IETLRRDPYAVYARRILKLMPLDPLIRDPGAAERGTLFHDILQAFIQSGADPSAPDALER 827 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK-MAIES 893 + F + LP ++ +W F + ++ + E ++ I A + + + Sbjct: 828 LLDAGKKLFAETKLPVDVEAVWWPRFERTAYGIIGWERGRAEAVAARHAEIRASAIEVGA 887 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 G L+G ADRID+ G +I DYKTG P K A +L+ PQL+LEAA L G+F ++ Sbjct: 888 TGKLLSGRADRIDIRADGSAEIIDYKTGSTPSKVQAHRLLAPQLALEAALLARGAFVELG 947 Query: 954 CRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + A L Y+RLK ++ + + + E++E++ + L ++ N E ++S Sbjct: 948 QAQPAELCYVRLKANGTVEPESILKIKDSEKAGPEIAEEAWQRLERLLAWYDNSEAGYLS 1007 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 ++ + + +YDHLARV EW D Sbjct: 1008 RALPFKEGDTEGDYDHLARVLEWSAGGD 1035 >gi|163745130|ref|ZP_02152490.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45] gi|161381948|gb|EDQ06357.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45] Length = 985 Score = 588 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 277/1044 (26%), Positives = 438/1044 (41%), Gaps = 84/1044 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F +AP F R ++ L + R + P +A V + V T R + LR Sbjct: 4 PQDTPRIFGLAPGVDFPRGLVRGLCD-------RLENDPPEAMARVELIVNTNRMARRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 +F + LP I+ + D+ L L P +QR LEL +L+ + Sbjct: 57 HDF---DAGPAGFLPRIRLITDLD------ALAPGVALPAPTPPLQRRLELIQLVSRLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ + L+ +LA +ID ++ E E + L W Sbjct: 108 AAPDLAPRE-------------SLYALSDSLAGLIDEMQGEGVSPETVAGLDVGHLSAHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL IA Y + +A + + R + P+I+AGSTGS Sbjct: 155 ERAQRFLAIAHDYLGQTTTRPDA--EARRRQLVARIIVRWQDNPPQHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA LM VA P GAI+LPG D +PTA+WN + + HPQY KL++ Sbjct: 213 TALLMEAVARLPQGAIILPGFDFEMPTAVWNELDQALL--------AEDHPQYRFRKLMN 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + R ++ ++ R+ ++S S P + + K+ ++ +D+ L Sbjct: 265 MLGVSRGAIEPWCDMPAVSMARNTLLSLSLRPAPVTHAWLNE--GPKLNDLHGATADITL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 IEA R EA++IA+ LR + ++ K+ALIT DR L R+V L R+ I D SAG+PL Sbjct: 323 IEAPTPRVEALAIALRLRQAAED-GVKAALITPDRMLTRQVTAALDRWNILPDDSAGMPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + D A+ TL+KHPL G + LE R Sbjct: 382 QLSPPGRFLRHVAALFLRKLDAEALLTLLKHPLTHSGAGRNFHQLYTQRLEAEIRRHGLP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D L + ++ + W + + E Sbjct: 442 YPDAEGLTEIAERTAKRMEDPSGFRDWIAWVGE-----------------------TFPG 478 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK--IIETGSCIK 599 + G + D + + + +L ++ + + Sbjct: 479 HDAPGERPLPDCVAAHLALANRIAAGQPADPDHLLWQHGAGIAAQGVMENLTEHAVHGGA 538 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 NA ++ D++ L+ E V+ + I GT+E+R+ D +ILGGLNEG WP+ Sbjct: 539 MNAADYADLLGALLSQEEVREADTPHPDIMIWGTMEARVQGADLVILGGLNEGTWPEAPP 598 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ +G +AHD++ A + + TR++R + + SRWL RL Sbjct: 599 PDPWLNRQMREKAGLLLPERRVGLSAHDYQQAIASPEVWITRAIRSDEAEMVPSRWLNRL 658 Query: 720 LVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L G + + +++RG +LD R L+ + RP P PP A+PR S Sbjct: 659 GNLLGGLGETGGPEAWKAMQQRGSYWLDQVRALEAVERTAPAPRPSPRPPRAARPRKLSV 718 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK LI DPYAVYA+ LKL I + PD RG + H I+ + +K + Sbjct: 719 TEIKTLIRDPYAVYAKHSLKLRAINPLVQSPDAPVRGIVLHRIMEDFVKLVARDPARLTH 778 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--PAKMA 890 + ++ E+E P +W +I+ F+ E + Sbjct: 779 EALLEVAAQVLEEEAPWPAARAMWLARIDRIADWFIARERTRAEFSSPVAFEQGARGSHT 838 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 +G L+GFADRID G V I DYKTG P K+ Q+L D QL +EAA ++ G F Sbjct: 839 FADLGFTLSGFADRIDQTDDGDVLIYDYKTGTPPGKKE-QRLFDKQLLIEAAMVERGGFP 897 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 ++ VA+ +I L K D +E ++ L L +++ + Q F + Sbjct: 898 EVGVAHVAHAAFIGLGSKPVEVPAPLD------EESPQEVLAGLHALLSRYLDEGQGFTA 951 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWR 1034 R+ + YD LAR EW Sbjct: 952 R-RMVQSDAFAGNYDQLARFGEWD 974 >gi|294084829|ref|YP_003551589.1| inactivated superfamily I helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664404|gb|ADE39505.1| Inactivated superfamily I helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 1002 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 273/1042 (26%), Positives = 451/1042 (43%), Gaps = 60/1042 (5%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V+ I +PF +E+ ++ +P LA + VP++RA Q LRS F+++ Sbjct: 6 VYNIPAGTPFAKELAKGVIQLA---------SSPTDLARAIVMVPSQRAAQALRSAFLDV 56 Query: 68 TGKKSTILPIIKSLGDVVEEKFTA-----DLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 T ++ +LP + +GD+ ++ + L P +S ++R + LA+L+ ++ Sbjct: 57 TKGQAALLPRMIPIGDLADDVADVFPELYGGADTAMLPPAISPLRRQMMLAKLLGGFK-- 114 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + A+ LA L ++D + + + L + E+Y W Sbjct: 115 ------------LGGQTPTFPQAMMLAHTLGQLLDQLYNVDANPDQLRDMLPERYSAHWQ 162 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241 L I W L N V + L+RA + + I+IAGSTGSI A Sbjct: 163 DIIKLLTILVDNWPAILASENVMDGVDRRNRLIRARVKAWQDNPPETLIVIAGSTGSIIA 222 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T L+ V+N PNG +VLPGLD W+ I+ S HPQY LA+LL Sbjct: 223 TRELIRCVSNLPNGHVVLPGLDSGAVPE-WDAISH-----------DSGHPQYQLAQLLH 270 Query: 302 FLDIKREDVKRL---GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 F+DI DV+ R ++ + F P T+ + E++ + Sbjct: 271 FMDITPLDVQNWVSNPESQPATSARRDLMREVFRPAPTTA-TWRQLSEDRPDLGRDALQG 329 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + +IE + R EA IA LR +L+ + +ALIT DR+LA V EL R+ I ID SAG Sbjct: 330 LQVIETHDRRAEAGLIAADLRATLEHEDQTAALITPDRHLAEAVIAELARWKITIDDSAG 389 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 L T + L L+ A+ + +A+ ++KHP A G + +E + LRG Sbjct: 390 TTLLTHRAGAFLQLLVEAMQENFAPLALLGVLKHPCAAGGMAQADFRAKVRHIEKLVLRG 449 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + + L + ++ + + + V + L Sbjct: 450 QRPAPGLEGLAIAI-------GDDKDLRDFIAIHIAVPFTPLVDAWQAPAPTMASLARGL 502 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ + D++ +LW + GK + L ++E G Sbjct: 503 GQTAEMMAAQTM--CIPSDGPDTETRVADKNDGALHLWDNQGGKAAADLLKNLVEHGHDQ 560 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 NA ++ + +++ TV + L ILG +ESR+ D LI+ G NEG WP Sbjct: 561 AVNATDFAQTLVQIMQDITVHAVQQSHPRLAILGAVESRMQTADHLIIAGFNEGNWPPQP 620 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+++ M+ + L +AHD MA + TR+ R+N+ TI SRWLQR Sbjct: 621 QTDPWMNSDMRKAVGLPPHNWRTSLSAHDVYMAICNPKVTITRAQRQNDAATIPSRWLQR 680 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + V+ RG +W L+ T KRP P PPL A+PR +S +EI Sbjct: 681 MDVVLSALGIAKALDRGDEKFEWLAILNPKTIPNRIKRPAPKPPLSARPRKFSATEIDMW 740 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HLMKQ 837 INDPYA+YA++ILKL + + PD RGTLFHN++ + + + + P+ + Sbjct: 741 INDPYALYAKKILKLRQLDDIDRPPDAALRGTLFHNVLADFTRTFPSGSLPDTAYQDLLA 800 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIG 895 I +HF + P I W F ++ +E E++ + + I + + Sbjct: 801 IGKTHFADQWATPDIRYFWWPRFEMVAGWIIETEKQRRDDLAFIHAEKKGSTILTGPAGP 860 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + L+ ADR++ K G I DYKTG P K QL +EA G + Sbjct: 861 VELSARADRLEKTKDGTWHIIDYKTGIVPSKSKVASGRATQLLVEALIAWDGGYDDKPGC 920 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 +A + Y +L + + I + D E + + ++TL + E + + + Sbjct: 921 DIAKMQYWKLSGRK--NKIGDIYDVLPDDGSPENTRDMMQSLITLFDDPEATYPAEPNIK 978 Query: 1016 EKSNIQSEYDHLARVAEWREEY 1037 K + + Y HLAR++EW++E Sbjct: 979 FKLS-YNPYRHLARISEWQQEG 999 >gi|27375864|ref|NP_767393.1| hypothetical protein bll0753 [Bradyrhizobium japonicum USDA 110] gi|27349002|dbj|BAC46018.1| bll0753 [Bradyrhizobium japonicum USDA 110] Length = 1048 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 304/1059 (28%), Positives = 485/1059 (45%), Gaps = 47/1059 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF++ S PF R ++ ALL+G LV F P LA T+Y+PT+RA++ +R F++ Sbjct: 2 RVFSVPISVPFLRTVVTALLDGRLVAGFEARR-EPARLADTTLYLPTRRAMRIVREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119 + +LP I +LGD+ E++ ++ P + ++R L LA+L+ W Sbjct: 61 EMKADAVVLPRIVALGDIDEDELAFADEGEQFSGATPLDIPPRLGELERRLTLAQLVAAW 120 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 P + PA+ + LA +LA +ID + T W L L ++ Sbjct: 121 AK---------GPVLSPLVVGGPASTLALAGDLARLIDDMVTRGVDWSALDGLVPDQLDR 171 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +W + +FL+IA W L E+N P + L+ AEA+ L GP+I AGSTGS+ Sbjct: 172 YWQHSLEFLRIARIAWPGHLAEINRIEPAARRDLLIAAEAKRLTAHPHGPVIAAGSTGSM 231 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN-ITSSNTTYSTHPQYSLAK 298 PATA+ + VA+ P+GA+VLPGLD + W TI + S HPQY++ Sbjct: 232 PATAKFLHAVASLPHGAVVLPGLDTDLDEDAWRTIGGVRDALGKFAEHPASNHPQYAMHA 291 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357 LL+ IKR DV+ L + GR ++ S+S P +++ + + + I + Sbjct: 292 LLERFGIKRGDVELL--QAPAEGGRDLLASESMRPSAKTEVWHDRLKQPDVAAKIAGGMT 349 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 ++A++EA N EA++IAIA+R + K +AL+T DR LARRV LTR+ + D S Sbjct: 350 NLAVVEAPNPEMEALAIAIAMREA-RHLDKSAALVTPDRALARRVMAALTRWDLAFDDSG 408 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T A K + + ++KHPL + G A LEL LR Sbjct: 409 GDVLMETSAGVFARLAAEAATKGLEPPTLLAMLKHPLCRLGRAPDTWKAAIEGLELAVLR 468 Query: 478 GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 G + L + + ++ + H ++RL ED + L+D + Q Sbjct: 469 GTRPPAGTAGLLREFNRFREELAKLWRSEVSALHKAEPRARLKAEDLDRVQALIDALRQA 528 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + P+ + +K ++ + + DE E + Sbjct: 529 LAPIESLAPSK-----PYDFAELAHRHREIMIELSRDEQGIPLAFEEREGLALAGAFDDL 583 Query: 591 IIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + T S + ++ D+ V+ + + + L I G LESRL+ D +I+GGL Sbjct: 584 LRGGTTSGLIVPLPDYPDVFQTAFGDRAVRRRDKPGARLQIYGPLESRLMQADRIIVGGL 643 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 EGVWP +P+LSR M+ +L L E+ IG +AHDF G +I T S + P Sbjct: 644 IEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGGDEVILTHSAKAGGAP 703 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 +ASR+L RL + G D + + G+ Y+ + +LD + K+P+P PP +P Sbjct: 704 AVASRFLHRLEAVAGDDRWKAAIRAGEKYVRFADRLDQPDEVRPIKQPEPRPPRATRPLK 763 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S + I+ + DPY +YA+ IL+LD + DRG+ H+ I E ++ + Sbjct: 764 MSVTAIEDWLRDPYTIYAKHILRLDALDPVDMPLSAADRGSAIHDAIGEFTERYATRLPD 823 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + +++ I + HF P +W F +I+ F E E + +E I ++ Sbjct: 824 DPARVLRAIGEKHFAPLMERPEARALWWPRFQRIARWFSEWETARRDVVEAITAETRGEI 883 Query: 890 AI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 +I L+ ADRI+ + G I DYKTG P + + + PQL+LEAA L+ Sbjct: 884 SITLDNERSFRLSARADRIERRQGGGYAILDYKTGQPPTGKQVRMGLSPQLTLEAAILRE 943 Query: 947 GSFSQIDCR-KVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIV 998 G F ID V+ L Y+RL + D + ++ L ++ Sbjct: 944 GGFPDIDAGSSVSQLVYVRLSGNNPPGEERILELKYKQGDEPQPPDIAAAEARAKLEALI 1003 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 ++ Q + S L L SN YD LAR+ EW Sbjct: 1004 RAFEDENQAYTS-LNLPMWSNRYGTYDDLARIKEWSAAG 1041 >gi|91974685|ref|YP_567344.1| hypothetical protein RPD_0203 [Rhodopseudomonas palustris BisB5] gi|91681141|gb|ABE37443.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas palustris BisB5] Length = 1049 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 302/1056 (28%), Positives = 492/1056 (46%), Gaps = 40/1056 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF++ PS+PF R I AL++G L+ F P LA T+Y+PT+RA + R F++ Sbjct: 2 RVFSVPPSAPFLRTTIKALVDGELIAGFDAR-AKPERLAEATLYLPTRRAGRLARDIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLL----SYNLNPPVSNIQRLLELARLILIWRNK 122 + G + +LP I LGDV E++ ++ P + + R L+LA+LI +W Sbjct: 61 VLGADAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPALEGLPRRLQLAQLIAVWAKG 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + P+ + PA+ + LA +LA +ID + T W L +L + + +W Sbjct: 121 L----RSGDPQQSPLVVGGPASTLALADDLARLIDDMATRGVDWAALDSLVPDAFDRYWR 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA ++W + L E + P + L+ AEA L GP+I AGSTGS+PAT Sbjct: 177 LTLDFLKIAGQWWPQHLRESDQIEPAARRDLLIEAEAARLAAHRGGPVIAAGSTGSMPAT 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301 A+L+ +A PNGA++LPGLD + W I + + HPQ+++ LL Sbjct: 237 AKLLHAIARLPNGAVILPGLDTELDEQAWRLIGAVRDKQGQLISPPSPNHPQFAMHGLLT 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360 + ++R ++ RLG +GR ++ S++ P + + + + ++ + ++ + + Sbjct: 297 RMGLERREIVRLGEAVR--HGREVLASEAMRPSAATASWHERLADPEVDRLIEQGVNGLT 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 +IEA N EA++IA+ALR + + + +AL+T DR LARRV L R+ + +D S G Sbjct: 355 VIEAPNSEIEALAIAVALREARER-GQSAALVTPDRALARRVVAALGRWNLPVDDSGGDS 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T A + + L+KHPL + G A LEL LRG + Sbjct: 414 LMETQAGIFARLAAEAALHGCEPATLLALLKHPLLRLGRAAGGWRHAIETLELALLRGTR 473 Query: 481 NSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + L ++ + + + H ++RL +E + A L++ + + P Sbjct: 474 PAAGSEGLVKEFAKYRAELTRLKRGELSALHPSEPRARLGDESLDAAQELIEALRAALAP 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592 L T + + + L + +D + L + + Sbjct: 534 LETVGAEPLD------LCAFGRRHRDVLIALSIDHDEIAVAFEGSQGSALLKAFDDLAAV 587 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 E S + ++ D+ V+ + L I G LE+RL D +ILGGL EG Sbjct: 588 EPLSGVLVPPHDYADVFETAFSDRIVRRPELAGAALRIYGPLEARLTQHDRVILGGLVEG 647 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP +P+LSR M+ DL L E+ IG +AHDF G +I T + + P + Sbjct: 648 VWPPAPRIDPWLSRPMRHDLGLDLPERRIGLSAHDFAQLLGADEVILTYANKVGGAPAVV 707 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 SR+L RL + G + +K RGQ YLD+ + LD + +P P PP EA+P S Sbjct: 708 SRFLHRLEAVTGKARWSAVKARGQSYLDYAQALDRPEQVTPIAQPAPRPPREARPLKLSV 767 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + I+ + DPY +YA+ IL L I DRG+ H + E + ++ + Sbjct: 768 TAIEDWLRDPYTIYAKFILGLSAIDPVDMPLSAADRGSAIHEALGEFTELFPDELPDDPA 827 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 ++++I + HF P +W F +I+ F E+ ++ ++F ++I Sbjct: 828 QVLREIGEKHFAPLMAHPEARALWWPRFARIAAWFGNWEQARRADGLRVFAERDGSLSIP 887 Query: 893 ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 L+ ADRI+ G I DYKTG+ P + + + PQL+LEAA L+ G F Sbjct: 888 LDGGRNFILSARADRIEHRADGSFAILDYKTGNPPTGKQVRMGLSPQLTLEAAILRDGGF 947 Query: 950 SQIDCR-KVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTLL 1001 ID V+ L Y++L I ++ S D+ + ++ L ++ Sbjct: 948 EGIDAGSSVSELTYVKLSGNSPPGDECVLELRIERKDERQSPDDAAAEARSKLETLIRRF 1007 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + QP+ + L LS S YD LAR+ EW Sbjct: 1008 DDEAQPYHA-LVLSMWSRRYGRYDDLARIKEWSAAG 1042 >gi|99082685|ref|YP_614839.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040] gi|99038965|gb|ABF65577.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040] Length = 977 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 274/1043 (26%), Positives = 445/1043 (42%), Gaps = 89/1043 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP +F + F R + L R+ P LA V + + T+R + +R F Sbjct: 8 KPRLFAVPCGVDFPRALYDGLTA-------RFADALPEELARVELILNTERMQRRVRQLF 60 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + +LP I L + +E L P + ++R LEL++LI + P Sbjct: 61 ---DAGPARLLPRISLLSGLNKEANLR------GLPPALPPLRRRLELSQLIAKLLDAQP 111 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 D+ A+ L+ +LA++ID +++E + + AL W A Sbjct: 112 DLAAR-------------ASLYDLSDSLAELIDEMQSEGVSTDQIRALDVSDMSGHWKRA 158 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 DF+ IA ++ L+ + + +M AE PII+AGSTGS T Sbjct: 159 QDFIGIADQFVDMHEGALDVN--ARQRQVVMDLIAEWEQTPPTHPIILAGSTGSRGTTLL 216 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 LM +A P GA+VLPG D P +W ++ + HPQY KL+ LD Sbjct: 217 LMEAIARLPQGAVVLPGFDFDQPEPVWESL--------TDGLVAEDHPQYRFHKLMRDLD 268 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 ++ D+ R + + + R+ +IS + P +D ++ + ++ + + L+EA Sbjct: 269 LRPSDICRWVDTTPQSPARNRLISLALRPAPVTDAWMSE--GPYLKDLDQATEALTLVEA 326 Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 N R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG+PL + Sbjct: 327 ANPRSEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWDILPDDSAGLPLQLS 385 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L + + + + TL+KHPL G LEL R D Sbjct: 386 PPGRFLRHVADLFCRPLQADMLLTLLKHPLTHSGAERGLHLLHTRDLELHMRRNGPPFPD 445 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + R + + + Sbjct: 446 CESLSAFGSTRD------------------------------LQPGWSDWLAQSFAGRDR 475 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANA 602 G ++SDW + + LW ++ G + ++ ++ A Sbjct: 476 TGTRALSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTA 535 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ +P Sbjct: 536 RDFADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAARPDP 595 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 +L+R ++ + L E+ IG +AHDF+ A + TR++R T+ SRWL R+ L Sbjct: 596 WLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAVRSEEADTVPSRWLNRMTNL 655 Query: 723 GGT-------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 G ++ RGQ +LDW LD P RP P PP+ A+PR + +EI Sbjct: 656 LGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTPLSPRPSPRPPVAARPRRLTVTEI 715 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +LI DPYA+YA+ +L+L + ++PD RGT+ H ++ + IK + Sbjct: 716 PKLIRDPYAIYAKHVLRLKPVDPLLQEPDALLRGTIIHKVLEDFIKSAQEQPENLSARHF 775 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 E E P +W K++ F+ E + QS ++ ++ + Sbjct: 776 IDHARRVLETEVPWPVARTLWLTRLKKVAEDFVTGERQRQSRARPSGFEKSGQVRLDPLD 835 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + ADRID+ + G + + DYKTGD P ++ QK + QL +E A + G+FS Sbjct: 836 FEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQ-QKSFEKQLLIETAMAEQGAFSDYGAA 894 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 +V YI LK + DE K L +V + EQ F S R+ Sbjct: 895 RVERALYIGLK------PPVKEVAAPILDEPPAKVWAELRSLVEAYFDAEQGFSSR-RMV 947 Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038 + + +YDHLAR EW D Sbjct: 948 HRDDFAGDYDHLARYGEWDRSSD 970 >gi|75674248|ref|YP_316669.1| hypothetical protein Nwi_0049 [Nitrobacter winogradskyi Nb-255] gi|74419118|gb|ABA03317.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 1053 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 306/1058 (28%), Positives = 487/1058 (46%), Gaps = 40/1058 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V + S PF R +I AL++G L+E FR P LA T+Y+PT+RA + R F++ Sbjct: 2 RVRNVPSSVPFLRAVITALVDGELIEGFRPR-AQPERLAEATLYLPTRRAGRMARDIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-----LLLSYNLNPPVSNIQRLLELARLILIWRN 121 + + ILP I +LG + E++ + L P + + R L LA+LI W Sbjct: 61 VLDTDAVILPRIVALGGIDEDELAFAQAVSLPPETLELPPALDGLARRLALAQLIDAWAR 120 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 +L + D P + PA+ + LA +LA ++D + T W L L E +W Sbjct: 121 RL--NLGDGEPARAPLVLGGPASTLTLAADLARLMDDMATRGVDWRALDGLVPEALDRYW 178 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + DFLKIA YW L E P + L+ AEA L GP+I AGSTGS+P+ Sbjct: 179 QITLDFLKIARDYWPAHLQETGRIEPAARRDRLIEAEAARLAAHHVGPVIAAGSTGSMPS 238 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT--EKSTNITSSNTTYSTHPQYSLAKL 299 TA+L+ +A P GA+VLPGLD + W I + + HPQ++L L Sbjct: 239 TAKLLHAIATLPQGAVVLPGLDTDLDEEAWRLIGGVRDKASGAFITPPAAGHPQFALHGL 298 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSD 358 L IKR +VK LG YGR M+ S++ P + + +T + E ++ + I + Sbjct: 299 LARFGIKRSEVKALGF--PAPYGREMLASEAMRPAEATAQWHTRLAEPEVADKIAAGLQN 356 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 +A+I A N EA+ IA+A+R + + K +AL+T DR LARRV L R+ + D S G Sbjct: 357 LAVIAAANPEMEALGIAVAMREA-RDLNKTAALVTFDRALARRVMAALGRWNLAFDDSGG 415 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 PL T + + L+KHPL + G SRA ALEL LRG Sbjct: 416 DPLMDTPAGIFARLAAETACNGLEPPTLLALLKHPLCRLGRAAGGWSRAIIALELAILRG 475 Query: 479 NKNSYDIMDLKSLVL-------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + L + ++ H ++ L + + L+ + + Sbjct: 476 PRPPPGGKGLADEFARFCDERDQLDRGESSSLHRSEPRAALKPDHLDDISALIAALRDAL 535 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 PL ++++ L++ ++++ D+ + G+ L+ F + Sbjct: 536 APLEGDGASRSADFTLLAL-----QHRQTIESLSCDDEGVAVA-FDGRHGRALADAFDDL 589 Query: 592 IETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ G S + ++ + V+ S++L I G LE+RL D +ILGGL Sbjct: 590 VDAGERSGLTVRIADYPETFEAAFGDRVVRRPQATSASLRIYGPLEARLTQCDRVILGGL 649 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 EGVWP +P+LSR M+ +L L E+ IG +AHDF G +I + + + P Sbjct: 650 TEGVWPPAPPTDPWLSRPMRHELGLDLPERRIGLSAHDFTQLFGAEEVILSHAAKAAGAP 709 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 +ASR+L RL + G + + K+ G Y+ + LD ++ +P P PP A+P Sbjct: 710 AVASRFLHRLEAVAGATRWTSAKQAGARYIQYAEALDRPSEVTPIAQPAPKPPRTARPTR 769 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S + I+ + DPY +YAR ILKL + DRG+ H+ + + K+ Sbjct: 770 LSVTAIEDWLRDPYTIYARYILKLLPLEAVDMPLSAADRGSAIHDALGDFTKRYPASLPD 829 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + +++ I +S F P +W F +I+ F E E ++ + +I + K+ Sbjct: 830 DPEDVLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEPTRRAHLVRIDAEVSGKI 889 Query: 890 AIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 I L+ ADRI+ L G + DYKTG P + + + PQL+LE+A L+ Sbjct: 890 EIPIDGDRRFTLSARADRIEHLGGGRFAVLDYKTGSPPSSKQVRLGLSPQLTLESAILRN 949 Query: 947 GSFSQIDC-RKVANLFYIRL------KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 G F+ I V+ L Y+RL + +D S D+ ++ +L+ L ++ Sbjct: 950 GGFAGIPPGASVSELVYVRLSGNNPAGEPRPVDLDNGKTATRSPDQAADVALEELTALIR 1009 Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + +Q + S L L YD LAR+ EW Sbjct: 1010 AFDDEQQGYAS-LDLPMWKARYGVYDDLARIKEWSAAG 1046 >gi|114705058|ref|ZP_01437966.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506] gi|114539843|gb|EAU42963.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506] Length = 1049 Score = 582 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 350/1056 (33%), Positives = 537/1056 (50%), Gaps = 40/1056 (3%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 + N+F+I PF + +LL+G L +RYD +PL LA IYVPT+RA + L F Sbjct: 2 RANIFSIPLRCPFLPTLAASLLDGHLDVGYRYDG-DPLSLADTLIYVPTRRAARSLAFAF 60 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 G + ILP I+ +G+ E + + P + ++R LELARL+ WR+ Sbjct: 61 QARLGDGAAILPQIRPIGEGDEAELLHGVDSPMAFEPVIGELERRLELARLVRRWRSMTR 120 Query: 125 DII-KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 K L+ LP S A+A++LA +L ++D IETE + L L E+ WW L Sbjct: 121 QAELKALFGSDDAVLPASAADALYLAADLGTLLDEIETEGVPFSQLGQLAPEELAEWWRL 180 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPAT 242 FL I +++W E+L S + ++ EA+ L GP+I+AGST + P T Sbjct: 181 TLTFLTIVTQHWPEQLKADGRISEARAKNDWLKNEADRLRDHPPTGPVILAGSTATAPQT 240 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 LM VAN GA+VLPGLD + A ++ I HPQY L ++LD Sbjct: 241 IALMRVVANMEKGAVVLPGLDLLLDQAAFSMIDRTLA------IASPGHPQYGLKRILDG 294 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + I R+ V L + R +S++ P +T++ ++ N + + LI Sbjct: 295 ILIDRDSVGVL-ESDKHLIARERFLSEALRPAETTEHW----SKSGSANGEDALDGLTLI 349 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA REEA++IA A+R +L ++K ALIT DRNLARRV +EL RFGI + SAG PL Sbjct: 350 EATEPREEALAIACAMRDALSDSKATCALITPDRNLARRVVIELERFGIRANDSAGRPLK 409 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 +T +++ +LL+ F D + + L+KHPL + G RA A+EL+ALRG+ Sbjct: 410 STAPGTLVLTLLSVAFTPGDPIPLLALLKHPLVRLGMTSAEARRAARAIELIALRGSVEI 469 Query: 483 YDIMDLKSLVLDRIATQK--------------NNTHVPHWQSRLSEEDKELAVLLVDHIL 528 D L +V R+ + + +S+ED+ELA Sbjct: 470 ADAAKLSEIVDRRLLGSARPVDDEAAAEVTKQDRIRLSRPAQLVSKEDRELARRFAQAFE 529 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 I+PL+ + ++D+T + L+ +C DE+ L+ EE G L Sbjct: 530 ASISPLIALRG-----EATRELADYTAVLTEVLETLCRDENGYPRELYAEEPGHALKDFL 584 Query: 589 SKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 S ++ + A E D++ L+ TV+P+ S+ F+ GTLE+RL + DT ILG Sbjct: 585 SSLVASPRTGFDFPATELEDVVDALMASVTVRPRGGLSARAFVWGTLEARLQSVDTAILG 644 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 GLNEG WP FLSR+M+ D+ L E+ IG AAHDF MA G R +I TRS +++ Sbjct: 645 GLNEGTWPAGAKNGAFLSRMMRRDIALDPPERRIGLAAHDFWMAMGARRVILTRSTKQDG 704 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 PTIASRWLQR+ L G + +LK+RG YL R+L+ +++ RP+P PP+E +P Sbjct: 705 APTIASRWLQRIAALAGPERTGDLKRRGIVYLHAARRLEESSRTAIAARPEPKPPVEKRP 764 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 R YS +E++ LI DPYA++A +IL+L+ + + P +RG+L+H I+++ ++ ++ Sbjct: 765 RRYSVTEVETLIRDPYAIHATKILQLEPLDPLMRSPAAAERGSLYHAILSDFVQNGLDPM 824 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + +I F+KE LP I+ W I+ +L+ E + + I Sbjct: 825 ADAALDQLLEIARDRFDKEQLPAEIEAFWWPRMEAIASGYLDWERGRNADVAVRHAEIKG 884 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + + I + L G ADRID+++ G ++I D+KTG P A+ L+ PQ+ LE G Sbjct: 885 SITVTGIDVELVGKADRIDVMRDGSIEIIDFKTGTAPSVAQARSLLAPQMPLEGGMALRG 944 Query: 948 SFSQI-DCRKVANLFYIRLKQ-----KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 F + D ++ +L Y+RL++ + T + +LS K++ + Sbjct: 945 GFEDVKDADRIHDLTYVRLREHEVYPEGLAKPATKTAEAVDPMDLSVKAITKFESLAAKF 1004 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 Q E PF S R + + YDHLAR EW Sbjct: 1005 QKRETPFTSRFRPAYAGDFSGTYDHLARAREWAVAG 1040 >gi|316931472|ref|YP_004106454.1| double-strand break repair protein AddB [Rhodopseudomonas palustris DX-1] gi|315599186|gb|ADU41721.1| double-strand break repair protein AddB [Rhodopseudomonas palustris DX-1] Length = 1049 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 306/1056 (28%), Positives = 490/1056 (46%), Gaps = 40/1056 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +VF++ S+PF R +I AL++G LV+ F P LA T+Y+PT+RA + R F++ Sbjct: 2 HVFSVPSSAPFLRTVIAALVDGRLVDGFEAR-SAPERLADATLYLPTRRAGRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKF----TADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + +LP I +LGD+ E++ A L + P + + R L LA+LI W + Sbjct: 61 VLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGLPRRLLLAQLIASWAAR 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L P + PA+A+ LA +LA +ID + T W L L + + +W Sbjct: 121 LKPD----DPTQAPLVVGGPASALALADDLARLIDDMSTRGVDWSALETLVPDAFDRYWS 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA W E L E + P + L+ AEA+ L GP+I AGSTGS+PAT Sbjct: 177 LTLDFLKIAGHAWPEYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPAT 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301 A+L++ +A P+GA+VLPGLD + A W+ I + HPQY++ LLD Sbjct: 237 AKLLTAIARLPHGAVVLPGLDVDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLD 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360 + + R DV++LG + +GR ++ S++ P + + + + + + + + + Sbjct: 297 RMGVTRRDVQQLG--TPARHGRELLASEALRPSSATAVWHDRLKDADVDRLIGEGIGGLT 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA N EA++IA+ LR + ++ K +AL+T DR LARRV L R+ + +D S G Sbjct: 355 LIEAPNSEAEALAIAVVLREAREQ-GKTAALVTPDRALARRVVAALGRWHLPVDDSGGDS 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T A + + + L+KHPL + G + RA LEL LRG + Sbjct: 414 LMETQPGIFARLAAEAALEGCEPATLLALLKHPLLRLGRADHGWRRAIETLELALLRGPR 473 Query: 481 NSYDIMDLKS-------LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 L + + + H ++RLSE + A L+ + + P Sbjct: 474 PPAGCHGLAKEFAIFRIELAKLKRGEASALHPSEPRTRLSEPSLDDAQALIAQLEAALAP 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KII 592 L T+ + + + L+ + D + L + + Sbjct: 534 LETFGPSPLD------LCEIGARHRDVLKALTTDHEGIAEAFEGPQGSALLRAFDDLAAV 587 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 S + A ++ ++ V+ + + I G LE+RL D ++LGGL EG Sbjct: 588 GPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEG 647 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP +P+LSR M+ +L L E+ IG +AHDF A G + + + P +A Sbjct: 648 VWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFIAHAAKVGGAPAVA 707 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 SR+L RL + G D + +K RGQ YLD+T +LD +P P PP A+P Sbjct: 708 SRFLHRLEAVAGEDRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLPV 767 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + I+ + DPY +YA+ IL+L + DRG+ H + E ++ + + Sbjct: 768 TAIEDWLRDPYTIYAKYILRLSPLDPVDMPLSGADRGSAIHAALGEFTERYQDAMPDDPA 827 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 ++QI HF +W F +I+ F E++ ++ + ++ + I Sbjct: 828 AALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFGAWEQQRRTGVVQVQAERRGTLMIP 887 Query: 893 SIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 G L+ ADRI+ G I DYKTG P + + + PQL+LEAA L+ G F Sbjct: 888 LGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGGF 947 Query: 950 SQID-CRKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIVTLL 1001 I V+ L Y++L I + D+ ++++ L +V Sbjct: 948 EGIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRRF 1007 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 ++ +Q + S L LS S YD LAR+ EW Sbjct: 1008 EDEKQSYRS-LVLSMWSQRYGTYDDLARIKEWSAAG 1042 >gi|85705746|ref|ZP_01036843.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217] gi|85669736|gb|EAQ24600.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217] Length = 979 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 261/1045 (24%), Positives = 437/1045 (41%), Gaps = 87/1045 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P ++ I P F R ++ L R+ P LA V + V T+R + +R Sbjct: 4 PSDAPRLYGIPPGVDFPRALVGGL-------RARHAGQPPETLARVQLIVNTRRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + +LP I L D+ E L ++ V ++R LEL RLI + Sbjct: 57 ELFDQ---GPPCLLPRISLLTDLGE------LWDLAHIPDAVPPLRRRLELVRLITKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ + L+ +LA ++D + E + AL W Sbjct: 108 SAPDLAPR-------------SAIYDLSDSLAGLMDEMHGEGVSPHAIEALDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL I Y+ + + ++ + R A K P+I+AGSTGS A Sbjct: 155 ARIKSFLGIVRHYFEAGGAAPDVET--RQRLVIERLAALWDEMPPKHPVILAGSTGSRGA 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D P +W+ + + + HPQY ++ Sbjct: 213 TQHLMQAVARLPQGAVVLPGFDFDTPAPVWDALDDAMLS--------EDHPQYRFCRVAV 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 I D++ + R+ ++S + P +D D + +I +DV L Sbjct: 265 GAGITPVDIRPWSDTRPANPARNALVSLALRPAPVTDQWLRD--GPHLRDITGAMADVTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA ++R+EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG+PL Sbjct: 323 VEAPSQRQEALAIAMRLRQAAED-GRTAALITPDRTLTRQVTAALDRWDILPDDSAGLPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + + ++ TL+KHPLA G R LEL R Sbjct: 382 HLSPPGRFLRHVADLFRNRLSAESLLTLLKHPLAHQGAERGTHLRLTRELELHLRRHGPP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L++ + + +L V+ + C Sbjct: 442 YPTEDSLRAW--------------------GAGQRDQLIPDWVNWLCDCF--------VN 473 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKI-IETGSCIK 599 G + + + + + + H LW ++ G+ +++ E Sbjct: 474 RDYSGEMPLENSVAAHLELAEQIAHGCHGTGSGTLWLKDAGQEAQKAVTELQTEAHHAGT 533 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ + +++ V+ ++ + I GTLE+R+ D LIL GLNEG WP + Sbjct: 534 LSASDYSSLFHKVLSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPVSPK 593 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R ++ + L E+ IG +AHDF+ A + TRS+R + T+ SRWL R+ Sbjct: 594 ADPWLNRALRHQVGLLLPERRIGLSAHDFQQAIAAPEVWLTRSVRSADAETVVSRWLNRI 653 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L L GG D ++ RG +LD L+ + P RP P PP+ +P + Sbjct: 654 LNLLSGLPDQGGQAAIDAMRARGHVWLDHAAALEEPGEAPRAARPAPAPPVAVRPDHLTV 713 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EIK+LI DPYA+YAR ILKL + + PD RGT+ H I+ I++ + + Sbjct: 714 TEIKRLIRDPYAIYARHILKLRPLDPLMRAPDALLRGTVLHEILEGFIRETLEHPAQCTH 773 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + ++ + +W +++ F++ E + ++ ++ + + Sbjct: 774 ATLMRHAETVLAQNVPWAEARALWLARLERVADWFIDTEAQRRALAHPVYFEAAGRATLP 833 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G L+ ADR+DL G + I DYKTG P + Q D QL LEAA F + Sbjct: 834 DLGFTLSAKADRLDLDDLGRLHIYDYKTGAPPSTKE-QTSFDKQLLLEAAIATRSGFEGM 892 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA +I L K D + K +++ + + + + Sbjct: 893 GPTRVARAVFIGLGSTPKELDAPLDTEPPD------KIWSEFHALMSAYFDPDMGYTARR 946 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 + +YD LAR EW Sbjct: 947 APRMAEDD-GDYDQLARYGEWEMTD 970 >gi|259417393|ref|ZP_05741312.1| double-strand break repair protein AddB [Silicibacter sp. TrichCH4B] gi|259346299|gb|EEW58113.1| double-strand break repair protein AddB [Silicibacter sp. TrichCH4B] Length = 977 Score = 579 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 266/1043 (25%), Positives = 447/1043 (42%), Gaps = 89/1043 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 P +F + F R ++ L+ R+ P LA V + + T+R + +R F Sbjct: 8 TPRLFAVPCGVDFPRALVDGLIQ-------RFADQPPEALARVELILNTERMQRRVRQLF 60 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + +LP + L + ++ L P + ++R LEL++LI + P Sbjct: 61 ---DSGPARLLPRVSLLSGLSKQANLR------GLPPALPPLRRRLELSQLIAKLLDAQP 111 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 D+ ++ L+ +LA++ID +++E + + AL W A Sbjct: 112 DLAAR-------------SSLYDLSDSLAELIDEMQSEGVTTDQIRALDVSDMSGHWKRA 158 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 DF+ IA ++ L+ + + ++ E + PII+AGSTGS T Sbjct: 159 QDFIGIADQFVEMHEGALDVN--ARQRQVVLDLITEWEHTPPQHPIILAGSTGSRGTTLL 216 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 LM + P GA+VLPG D P +W+++ + HPQY KL+ LD Sbjct: 217 LMEAITRLPQGAVVLPGFDFDQPEDVWDSLNDGL--------VAEDHPQYRFFKLMRDLD 268 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 ++ D++ + R+ +IS + P +D T+ + ++ + + LIEA Sbjct: 269 LRPRDIRAWVDTKPVSPPRNKLISLALRPAPVTDAWMTE--GPHLTDLDQATDALTLIEA 326 Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 + R EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG+PL + Sbjct: 327 ASPRSEALAIALRLRQAAED-GQTAALITPDRMLTRQVSAALDRWNILPDDSAGLPLQLS 385 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L + + + + TL+KHPL+ G LEL R D Sbjct: 386 PPGRFLRHVADLFCRPLQADMLLTLLKHPLSHSGEERGLHLLHTRDLELHMRRYGPPFPD 445 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + R + + + Sbjct: 446 HESLSTFGTTRD------------------------------LQPGWSDWLAQSFAGREQ 475 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANA 602 G ++SDW T + + LW ++ G+ +F ++ E + A Sbjct: 476 TGLRALSDWVADLRTTAEFIAAGSQTGGAGELWDKKAGRKALEIFQELEAEAPHGGEMTA 535 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + D++ L+ V+ + ++ I GTLE+R+ D +ILGGLNEG WP+ + +P Sbjct: 536 RDLADLLGALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAASPDP 595 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 +L+R ++ + L E+ IG +AHDF+ A + TR++R T+ SRWL R+ L Sbjct: 596 WLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAIRSEEADTVPSRWLNRMTNL 655 Query: 723 GGT-------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 G ++ RGQ +LDW LD P RP P PP+ A+PR + +EI Sbjct: 656 LGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPLPSPLSPRPSPRPPVAARPRRLTVTEI 715 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +LI DPYA+YA+ +L+L + + PD RGT+ H ++ + IK + Sbjct: 716 PKLIRDPYAIYAKHVLRLKPVDPLLQKPDALLRGTIIHKVLEDFIKSAQEQPETLTARAF 775 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + E E P +W K++ F+ E + Q ++ ++ + Sbjct: 776 IEQSQRVLEAEVPWPVARTLWLTRLKKVAEDFVAGERERQLRARPSGFEKSGQVRLDPLD 835 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + ADRID+ + G + + DYKTGD P ++ QK + QL +E A + G+F Sbjct: 836 FEIAAKADRIDVDERGMLHLYDYKTGDPPSEKQ-QKSFEKQLLIETAMAEQGAFEDYGAA 894 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 +V YI LK + DE K + L ++ + EQ + S R+ Sbjct: 895 RVERSLYIGLK------PPVKEVAAPILDEPPAKVWEELRSLIEAYFDAEQGYSSR-RMV 947 Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038 + + +YDHLAR EW D Sbjct: 948 HRDDFAGDYDHLARYGEWDRSSD 970 >gi|86747754|ref|YP_484250.1| hypothetical protein RPB_0628 [Rhodopseudomonas palustris HaA2] gi|86570782|gb|ABD05339.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas palustris HaA2] Length = 1048 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 297/1049 (28%), Positives = 471/1049 (44%), Gaps = 27/1049 (2%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF++ PS+PF R I AL++G L+E F P LA T+Y+PT+RA + R F++ Sbjct: 2 RVFSVPPSAPFLRTTIEALVDGRLIEGFDAR-AKPERLAEATLYLPTRRAGRLARDIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLL----SYNLNPPVSNIQRLLELARLILIWRNK 122 + G + +LP I LGDV E++ ++ P + + R L LA+LI W Sbjct: 61 VLGTDAVLLPRIVPLGDVDEDELAFAQAATGAADLDIPPALDGLPRRLLLAQLIAAWAKG 120 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + P+ + PA+ + LA +LA +ID + T W L L + + +W Sbjct: 121 L----RPGDPQQSPLVVGGPASTLALADDLARLIDDMATRGVDWAALDMLVPDAFDRYWR 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L DFLKIA ++W L E + P + L+ AEA L GP+I AGSTGS+PAT Sbjct: 177 LTLDFLKIAGQWWPLHLRETDRIEPAARRDLLIEAEAARLAAHRGGPVIAAGSTGSMPAT 236 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLLD 301 ARL+ +A P+GA+VLPGLD + A W I + HPQ+++ LL Sbjct: 237 ARLLHAIAQLPHGAVVLPGLDTELDEAAWQMIGAVHDKQGKLISPPSPNHPQFAMHGLLA 296 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-QKCFSDVA 360 + ++R DV RLG +GR ++ S+ P + + + + I + + Sbjct: 297 RMGLERRDVLRLGEGER--HGREVLASEMMRPSSATAAWHDRLADPAIDQLIGDGTHGLT 354 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA N EA++IA+ LR + + + +AL+T DR LARRV L R+ + +D S G Sbjct: 355 LIEAPNSEIEALTIAVVLREARER-GQSAALVTPDRALARRVVAALGRWKLPVDDSGGDS 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + + L+KHPL + G A LEL LRG + Sbjct: 414 LMDTQAGIFARLAAETALHGCEPATLLALLKHPLLRLGRAAYGWRSAIETLELALLRGTR 473 Query: 481 NSYDIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + L R K N+ R + L + + Sbjct: 474 PAAGTEGLAKEFARYRAELTKLNSGELSALHRAEPRARLGDEALDEAHALIVALRAALAP 533 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-KIIETGSCI 598 ++ + + + + L + +D + L + +E S + Sbjct: 534 LESVGVEPIDLCAFGQRHRAVLIALSIDHDDNAVAFEGPQGSALLKAFDDLAEVEPLSGV 593 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++ ++ V+ + L I G LE+RL D ++LGGL EGVWP Sbjct: 594 MVPPHDYPELFETAFSDRIVRRPELAGAALRIYGPLEARLTQHDRVVLGGLVEGVWPPAP 653 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 +P+LSR M+ +L L E+ IG +AHDF G +I + + + P +ASR+L R Sbjct: 654 RIDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGANEVILSHAAKVGGAPAVASRFLHR 713 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + G + ++K RG YLD+ LD + +P P PP EA+P S + I+ Sbjct: 714 LEAVAGKARWSDIKARGATYLDYALALDRPDQVTPIAQPAPKPPREARPLKLSVTAIEDW 773 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + DPY +YA+ IL L + +RG+ H + + ++ + + L+++I Sbjct: 774 LRDPYTIYAKFILGLSALDPVDMPLSAANRGSAIHEALGDFTERFPDALPDDPAGLLREI 833 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIG 895 + HF P +W F +I+ F E+ ++ ++F ++I Sbjct: 834 GEKHFAPLMDHPEARALWWPRFARIAAWFGNWEQGRRADGRRVFAERDGSLSIPLDGGRN 893 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC- 954 LT ADRI+ G I DYKTG+ P + + + PQL+LEAA L+ G F ID Sbjct: 894 FVLTARADRIEHRPDGSYAILDYKTGNPPSSKQVRLGLSPQLTLEAAILRDGGFQDIDAG 953 Query: 955 RKVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 V+ L Y++L ++ S D+ + ++ L +V + QP+ Sbjct: 954 ASVSELMYVKLSGNSPPGRELPVKLAVGNETPQSPDDAAIEARAKLAALVRQFDDEAQPY 1013 Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + L LS + YD LAR+ EW Sbjct: 1014 HA-LVLSMWTQRYGRYDDLARIKEWSAAG 1041 >gi|299133348|ref|ZP_07026543.1| double-strand break repair protein AddB [Afipia sp. 1NLS2] gi|298593485|gb|EFI53685.1| double-strand break repair protein AddB [Afipia sp. 1NLS2] Length = 1055 Score = 576 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 297/1057 (28%), Positives = 470/1057 (44%), Gaps = 36/1057 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V I S+PF R ++ AL++G L++ FR P LA T+Y+PT+RA + R F++ Sbjct: 2 RVSNIPSSAPFLRTLLSALVDGRLIDGFRARE-APERLAQATLYLPTQRACRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIWRN 121 + G+ + +LP I +LG V E++ + + + + R L L RL+ W Sbjct: 61 VMGQDAVLLPRIVALGHVDEDELDFARGEAVEFFSLAVPEALDGLPRRLVLMRLVDAWAK 120 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 +L P + PA+ + LA +LA +ID + T W L L + +W Sbjct: 121 RLGSRELAAAP----LVAGGPASTLALADDLARLIDDMTTRGVDWSALDNLVPDDLDRYW 176 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 L DFLKIA W L E N P + L+ EA + GP I AGSTGS+P+ Sbjct: 177 QLTLDFLKIAKDAWPAYLGEQNLIEPARRRDLLIETEAARIATLP-GPFIAAGSTGSMPS 235 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLL 300 TA+ + +A HP GA+VLPGLD + + W I + + + S+HPQY+L LL Sbjct: 236 TAKFLHAIAKHPQGAVVLPGLDIDLDSESWRAIGGIRDSEGRFTEHPLSSHPQYALHGLL 295 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-NKIPNIQKCFSDV 359 + L ++R DV L +GR ++ S++ P + + + E + I F + Sbjct: 296 ELLGLERRDVIPL--AEPASHGRELLASEAMRPAAETAQWHDRLAEQDVAARIASGFETL 353 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 +IEA N EA++IA+A+R + + K +AL+T DR LARRV L R+ + D S G Sbjct: 354 TVIEAANPEMEALAIAVAMREA-RQKNKTAALVTPDRALARRVMAALGRWKLAFDDSGGD 412 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T I + L+KHPL + G E ++ + LEL LRG Sbjct: 413 SLMDTPAGIFARIAAETITTGLSPPTLLALLKHPLLRLGQAEGAWTKTVHDLELAVLRGT 472 Query: 480 KNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + + L++ + + H + RL++ D + L+ + + +T Sbjct: 473 RPAPGCEGLQAAFAWFVDEWGKARRKEHSALHRSEPRCRLTQGDIDGIARLLVALTEALT 532 Query: 533 PLVTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 PL + + + T + + L Sbjct: 533 PLENIARGAHDLATLAQLHRETLIRLSTSDDGRIAVFGGHDGQQLAQAFDELLLPSGDAT 592 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + I ++ D+ V+ + ++L I G LE+RL D +ILGGL E Sbjct: 593 SPAQTHIALEIADYPDLFATAFASGMVRRPQNEDASLRIYGLLEARLTQCDRVILGGLVE 652 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GVWP +P+LSR M+ DL L E+ IG AHDF G +I T + + P++ Sbjct: 653 GVWPPAPRIDPWLSRPMRHDLGLDLPERRIGLTAHDFAQLLGAEDVILTHAAKAGGAPSV 712 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASR+L R+ + + +D +RG Y+ + LD+ +P P PP+ +P S Sbjct: 713 ASRFLHRMKAIAKPEAWDAALERGARYIRYAEALDHPDSIQPIAQPAPKPPVTLRPLQMS 772 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 +EI+ + DPY ++A+RILKL + DRG+ HN + + + I Sbjct: 773 VTEIEDWLRDPYTIFAKRILKLTPLDPIDLPLTAADRGSAIHNALGDFTEAHSKNLPGNI 832 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ + HF P +W F +I+ F E K + I +I + ++ I Sbjct: 833 AAELRSFGERHFAALMEHPEARALWWPRFLRIAEWFAGWEIKRREDITEIAAELRGEIPI 892 Query: 892 E---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 L+ ADRI+ I DYKTG P + + + PQL+LEAA L+ G Sbjct: 893 PLANGRRFILSARADRIEYRSDRTFAIVDYKTGTPPSGKQVRLGLAPQLTLEAAILRGGG 952 Query: 949 FSQIDC-RKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000 F V+ L Y+RL I + D+ ++++L L ++ Sbjct: 953 FKPFPARASVSELVYVRLNGNNPAGEEKIVDLRIARGNEPQLPDDAADEALAKLTALIKK 1012 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 +N EQ + S L L+ SN YD LAR+ EW Sbjct: 1013 FENPEQAYTS-LDLAMWSNRYGTYDDLARIKEWSVAG 1048 >gi|84514937|ref|ZP_01002300.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53] gi|84511096|gb|EAQ07550.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53] Length = 974 Score = 576 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 264/1047 (25%), Positives = 447/1047 (42%), Gaps = 95/1047 (9%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F + + ++ L+ R + P A V IYV T R + +R Sbjct: 4 PTTTPRIFCEPCGVDYAKGLVTGLMA-------RAQHMPPEDFARVEIYVNTARMQRRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F + +LP I+ + D+ + +S ++ P ++ +QR LEL++L+ Sbjct: 57 AMF---DDGPALLLPRIRLVTDLARD------PISKDVPPAIAPLQRRLELSQLVAQLLQ 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ A L+ +LA ++D ++ E + + L W Sbjct: 108 SEPDLAPR-------------AALYDLSDSLASLMDEMQGEGVSPDAIAKLDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL I ++++ + ++ + A P+I+AGSTGS A Sbjct: 155 ARAQKFLTIIAQFFD---TTTQPDTEARQRLVIETLAARWADAPPDHPVIVAGSTGSRGA 211 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA M VA P GAIVLPG D +P +W+ + + T+ HPQY +L+D Sbjct: 212 TALFMQAVAKLPQGAIVLPGYDTDLPDTVWSAMDDGLTH--------EGHPQYRFKRLMD 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + DV R +++ + R+ ++S S P ++ + + + + L Sbjct: 264 LIGFGPADVARWSDLAPQRPARNRLVSLSLRPAPVTNQWLQE--GPDLGCLIAATEGLTL 321 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA +IA+ LR ++ ++ +ALI+ DR L R+V L R+ I D SAG PL Sbjct: 322 LEAASPRAEAEAIALRLRQAV-QDGITAALISPDRMLTRQVTAALDRWDIKPDDSAGTPL 380 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK-FGFPEKYLSRAKNALELVALRGNK 480 + L + + A+ TL+KHPL R + LEL + Sbjct: 381 QLSPPGRFLRHVADLFGTQLTGEALLTLLKHPLCHSDNADRGDHLRMTHDLELDLRKYGP 440 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L R Q + + +T L T Sbjct: 441 PFPTADTLLGWASTRADRQP----------------------WAQWVAELVTGLDTV--- 475 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN-LWFEEEGKTLSSLFSKII-ETGSCI 598 G+ ++D +T ++ C LW E G+ + + + G+ Sbjct: 476 -----GDKHLTDHLDAHLTLAESFCAGPALPGAGGLWDEAAGREAQRICTDLRTHAGAGG 530 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + ++ + +++ V+ + + I GTLE+R+ D ILGG+N+GVWP+ Sbjct: 531 VMSPRDYAALFGKILSAGVVRDRDAGHPQILIWGTLEARVQGADLTILGGMNDGVWPEAP 590 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 A +P+L+R+M++ L E+ +G +AHD++ A R + TR+ R ++ TI SRWL R Sbjct: 591 APDPWLNRMMRAQAGLLLPERRVGLSAHDYQQAVAGREVWITRAKRSSDAETIPSRWLNR 650 Query: 719 LLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTY 770 L L G + D ++ RG +L KL KRP P PP+ A+P + Sbjct: 651 LTNLLGGLPDQNGPEALDRMQARGAAWLAMAAKLSAPGADVAKVKRPAPCPPVAARPNRF 710 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S ++IK LI DPYA+YAR++L+LD + D RG + H I+ E +++ + + Sbjct: 711 SVTQIKTLIRDPYAIYARKVLRLDPLDPLTPSADAPLRGVIIHGILEEFVRQNHAPDDLD 770 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + I HF ++ P W F + +F + E + + V K+ Sbjct: 771 A---LLAIATRHFTEKCPWPTHRAQWMARFALAADAFCKAEVGRHALSDTRLVEQEGKLL 827 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I + + LT ADRIDL SG + DYKTG P K +K D QL LE A ++ G F Sbjct: 828 IPDVEVTLTCKADRIDLTPSGTAILYDYKTGTMPTKPQQEK-FDKQLLLEVAMVERGGFE 886 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + +V + ++ +K K D ++ ++ L + + + + + Sbjct: 887 GVGPVQVDDAQFVSIKPDAKTVLAPIS------DNPTDTTMAELTALFEHWRRADSGYTA 940 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEY 1037 L K ++ S YDHL+R EW Sbjct: 941 RYALFSKKDVGS-YDHLSRFGEWDSSD 966 >gi|260429437|ref|ZP_05783414.1| double-strand break repair protein AddB [Citreicella sp. SE45] gi|260420060|gb|EEX13313.1| double-strand break repair protein AddB [Citreicella sp. SE45] Length = 977 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 276/1046 (26%), Positives = 462/1046 (44%), Gaps = 90/1046 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 ++ P VF +AP F ++ L R P +A V + V T R + +R Sbjct: 4 PSETPRVFALAPGVDFPAALVAGLKQ-------RMAGQPPEAMARVELIVNTTRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F +T+LP I+ L ++ D + +L PVS ++R LEL L+ + Sbjct: 57 QLF---DAGPATLLPRIRLLTEIA------DPIALADLPAPVSPLRRRLELTGLVSKLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ LA +LA ++D ++ E +D+ L W Sbjct: 108 AQPDLAPR-------------TALFDLADSLATLMDEMQDEGVSPDDIAQLDVSDESGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F I +Y+ + + ++AL + + + P+I+AGSTGS Sbjct: 155 QRALSFFNIVQRYFKTGEEAPDVN--AFRRLALEQRLKDWEISPPSHPVILAGSTGSRGG 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T RLM+ VA P GA+VLPG D P ++W+ +T+ + HPQ+ A+L+ Sbjct: 213 TNRLMNAVARLPQGALVLPGFDFDTPASVWDGLTDALSG--------EDHPQFRFARLMH 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L ++ +D+ R + GR+ ++S + P +D + +P++ + S++ L Sbjct: 265 GLGLRPDDIARWSGDAAPNDGRNRLVSLALRPAPVTDQWRDE--GPSLPDLTEATSELTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA ++R+EA +IA+ LR + ++ +ALIT DR L R+V L R+GI D SAG PL Sbjct: 323 VEAASQRDEATAIALRLRQAAED-GVTAALITPDRMLTRQVTAALDRWGILPDDSAGTPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 T L + + A+ TL+KHPL G RA LEL + Sbjct: 382 QLTPPGRFLRHVSTLFQQDLTAEALLTLLKHPLTHSGHERGEHLRATRELELHIRNKSWP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 +L++ + E D + + Sbjct: 442 YPQPDNLRAW-----------------------GEAEGFGPWADWVAASFCQPPVH---- 474 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600 G ++DW L V + + LW E G+ + + E G Sbjct: 475 ----GTHLLADWLDLHVARAEAIAAGPMADDSELWKEAAGRKTRATVDGLRDEAGYGTDL 530 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +A ++ D+ ++ ++ + + I GTLE+R+ D LILGGLNEG WP+ Sbjct: 531 DARDYADLFNAVLSRGELRDRDAPHPRILIWGTLEARVNGADLLILGGLNEGSWPELPGA 590 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R M+ L E+ IG AAHDF+ A + TR+L+ ++ T+ SRWL RL+ Sbjct: 591 DPWLNRRMRHKAGLLVPERRIGLAAHDFQQAVAAPQVWLTRALKSDDAETVPSRWLNRLM 650 Query: 721 VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L G + +K+RG +L R L+ P RP P PP+EA+PR S + Sbjct: 651 NLMNGLPARHGPEALAAMKQRGAHWLALARALETPRPSPPATRPSPAPPVEARPRALSVT 710 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 EIK L+ DP+ +YARR+LKL + ++ PD RGTL H ++ + +++ ++ Sbjct: 711 EIKTLLRDPFHIYARRVLKLQALNPLQRAPDALLRGTLIHEVLEQFVRQSVSDPAQLTTE 770 Query: 834 LMKQIIDSHFE--KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + ++ + P +W+ K++ F E E Q + + I Sbjct: 771 ALLRLSVQIVGDPEVVPYPTTRHLWQARLAKVAEWFAETERARQQIARPVHFEQMGRGEI 830 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 ++G L G ADRID+ + G + DYKTG P ++ Q D QL LEAA ++ G+F + Sbjct: 831 PALGFTLRGKADRIDMDERGNAHLYDYKTGAAPSEKE-QLHFDKQLLLEAAMVERGAFKE 889 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + R ++ L + A+ +++ ++T ++ + + Sbjct: 890 LQPRHAERAVFVSLAPGK-----PREVPAPLAEAPAQQVWAEFETLMTRWFEPDRGYTAR 944 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEY 1037 L ++S+ S+YDHL+R EW Sbjct: 945 AALLKESD-SSDYDHLSRFGEWDVTD 969 >gi|84685774|ref|ZP_01013670.1| putative Helicase/Exonuclease [Maritimibacter alkaliphilus HTCC2654] gi|84665867|gb|EAQ12341.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2654] Length = 985 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 288/1048 (27%), Positives = 456/1048 (43%), Gaps = 90/1048 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 +++P VF AP F +I L R + P +A VT++V T R + L Sbjct: 8 SERPRVFAQAPGVDFPNAVIEGL-------RARLNGQPPEAMARVTLFVNTMRMKRRLIE 60 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + +LP I+ + D+ ++ A +L P VS ++R LELA LI + Sbjct: 61 LFDQ---GPPALLPRIRLVTDLGQDVAMA------DLPPAVSPLRRRLELASLISELLDS 111 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PD+ LA +LA+++D + E + L L ++ +W Sbjct: 112 QPDLAPRHAI-------------FPLADSLANLMDEMHGEGVPPDALEDLDVSQHSAYWA 158 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 + F+++ ++++ E + + R A + + PI++AGSTGS AT Sbjct: 159 RSLAFIRLIARFFGTAGAEP-PDLEARQRKVIERVTANWVERPPADPILVAGSTGSRGAT 217 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 A LM VA P GA+++PG D H+P +W + + T HPQ+ +LL Sbjct: 218 AMLMEAVARLPQGAVIMPGFDAHMPAHVWEKMDDAL--------TAEDHPQFRFRRLLSS 269 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L + DV R+ +S + P +D + +I +++LI Sbjct: 270 LGLSPGDVGDWHAQDAPNPRRNAFVSLALRPAPVTDQWQDE--GPGFADIDAATRELSLI 327 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA + REEA +IA+ LR + + +++ALIT DR L R+V L R+ I D SAG PL Sbjct: 328 EAPSPREEASAIAMILRDAA-QRGREAALITPDRVLTRQVTAALDRWRITPDDSAGRPLP 386 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 T +L + + + + TL+KHPL G R LEL ALR + Sbjct: 387 LTAPGRLLRHVAEMRGRRITGVDLLTLLKHPLTHTGGERNEHLRLSRDLELQALRRDMPF 446 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 D L +K V V+ + + L Sbjct: 447 PDKASLALWA----------------------GEKPDRVEWVEWLAPLVADLSE------ 478 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600 G S++ + V+ + + K LW E G+ L ++ E + Sbjct: 479 --TGTQSLTAHVEQVVSLAERLSAGPDDGKSGELWDREAGREARRLVDELLREAPFGGEM 536 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ D+ +++ +V+ + I GTLE+R+ D +IL GLNEG WP+ A Sbjct: 537 TPSDFHDLFAAVLNRGSVRNPDTPYPGIKIWGTLEARVGGADLVILAGLNEGTWPERPAP 596 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+++R M+ L E+ IG +AHDF+ G ++ TRSLR++ T+ SRW+ RL+ Sbjct: 597 DPWMNRDMRQKAGLLLPERRIGLSAHDFQQGLGAPEVVLTRSLRDDEAETVPSRWINRLM 656 Query: 721 VL------GGTDFFDNLKKRGQCYLDWTRKLDYT---TKQPHYKRPKPFPPLEAQPRTYS 771 L G D ++ RG +L R+LD K RP P PP+E +P+ S Sbjct: 657 NLMNGMSDAGADALKAMRSRGDAWLTLARELDRPGRDHKTDPAPRPSPRPPVEHRPKRLS 716 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-PE 830 F++I LI DPYA+YA +IL+L I + PD RGT H I++R + Sbjct: 717 FTQIGTLIRDPYAIYADKILRLRGIDPLHQSPDAPLRGTAVHAAFERFIRERPKDEARSD 776 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + FE + P ++W +I+ FL E++ Q I + Sbjct: 777 ARARLLSVAREVFEAQAPWPATRLLWLAKLERIADDFLNDEDERQRDATNALTEIRGEAT 836 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + G ADRID+L G V I DYKTG P ++ QK D QL LEA + G F Sbjct: 837 FGTPPFTVHGTADRIDVLNFGQVAIYDYKTGQPPSEKQ-QKAYDKQLLLEALVARKGGFG 895 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + K A + YI L K K I D + L ++ L ++ N E+ + S Sbjct: 896 DLGRMKTARVAYIGLGAKSKYVPIDVD------ETLLARTQAELESVLADFANRERGYTS 949 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + + ++DHLAR EW + Sbjct: 950 RRVVLSANRFGGDFDHLARYGEWDHTAE 977 >gi|148251711|ref|YP_001236296.1| DNA helicase/exodeoxyribonuclease V subunit B [Bradyrhizobium sp. BTAi1] gi|146403884|gb|ABQ32390.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bradyrhizobium sp. BTAi1] Length = 1048 Score = 569 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 310/1060 (29%), Positives = 488/1060 (46%), Gaps = 49/1060 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ S+PF R +I AL++G LV+ F +P LA+ T+Y+PT+R+++ R F++ Sbjct: 2 RVFTVPISAPFLRSVIAALVDGRLVDGFEAR-SDPARLATATLYLPTRRSLRVAREMFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119 + +LP + +LGD+ E++ + ++++QR L LARL+ W Sbjct: 61 ELKTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLEIPERLADLQRRLTLARLVAAW 120 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 P S + PA+ + LA +LA +ID + T WE L AL ++ Sbjct: 121 AKT---------PVSAPLVIGGPASTLALAGDLARLIDDMVTRGVSWEALDALVPDQLDK 171 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +W + +FL+IA W L E+ P + L+ AEA L GP+I AGSTGS+ Sbjct: 172 YWQYSLEFLRIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSM 231 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK-STNITSSNTTYSTHPQYSLAK 298 PATA+ + VA P+GA+VLPGLD + A WN+I HPQY++ Sbjct: 232 PATAKFLLAVAKLPHGAVVLPGLDTDLDEAAWNSIGGAKDRAGRVITPPAVNHPQYAMHL 291 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357 LL ++R DV RL GR ++IS++ P + + + + + + NI + Sbjct: 292 LLKRFGLERRDVIRL--AHPGRGGREVLISEAMRPSEATAVWHERLRQLDVAANIAEAMD 349 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 ++A++ A N EA++IAIA+R + K +AL+T DR LARRV LTR+ + D S Sbjct: 350 NLAVVAAPNPEMEALAIAIAMREA-RHLGKSAALVTPDRTLARRVMAALTRWHLTFDDSG 408 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T A + + + L+KHPL + G K + A LEL LR Sbjct: 409 GDALLETPAGIFARLAAEAAARSLEPPTLLALLKHPLCRLGRAAKGWTSAIETLELAMLR 468 Query: 478 GNKNSYDIMDLKSLVLD-------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 G + L + ++ H ++RLS E + A L+ + Sbjct: 469 GTRPQAGTSGLARDFARFRDEHTRLHQGEASSLHRAEPRARLSPEQLDRAGALIAQLQTA 528 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + PL ++ ++ L + D+ + + +G L+ F Sbjct: 529 LAPLENL-----ASPRPQDFAELAARHREVLIALSTDDVGLSTA-FTDRDGAALARCFDD 582 Query: 591 IIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++ +G + A ++ D+ V+ + L I G LE+RL+ D +I+GG Sbjct: 583 LLASGERCGLMAPLSDYPDLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQADRMIIGG 642 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 L EGVWP +P+LSR M+ L L E+ IG +AHDF G +I T + + Sbjct: 643 LIEGVWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGA 702 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 P +ASR+L RL + G D + RG+ Y+ + LD + ++P P PPL A+P Sbjct: 703 PAVASRFLHRLEAVAGADRWKAATARGETYVRYAEVLDQPPEVKPVEQPAPKPPLAARPL 762 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S + I+ + DPY ++AR ILKLD + DRG+ H I E + + Sbjct: 763 RMSVTAIEDWLRDPYTIFARYILKLDPLDPVDMPLSAADRGSAIHEAIGEFTQTYADALP 822 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 P+ +++QI + HF P +W F +I+ F E + I I I + Sbjct: 823 PDPAPVLRQIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWESARREQIGAITAEIRGE 882 Query: 889 MAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + I L+ ADRI+ G I DYKTG P + + + PQL+LEAA L+ Sbjct: 883 IGIPLSPDRTFILSARADRIERRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILR 942 Query: 946 AGSFSQIDCRK-VANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEI 997 G F I ++ L YIRL I D+ ++++ L + Sbjct: 943 EGGFDGIPAGSLISQLVYIRLSGNNPPGEERILELKINKSDPPQHPDQAAQEARAKLEAL 1002 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + ++ Q + S L LS +N YD LAR+ EW Sbjct: 1003 IRSFEDINQGYTS-LNLSMWANRYGAYDDLARIKEWSAAG 1041 >gi|56698683|ref|YP_169060.1| hypothetical protein SPO3872 [Ruegeria pomeroyi DSS-3] gi|56680420|gb|AAV97086.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 975 Score = 568 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 276/1044 (26%), Positives = 450/1044 (43%), Gaps = 88/1044 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF + P F R ++ L R P +LA + V T R + +R Sbjct: 4 PCPHPRVFALPPGVDFPRALVQGL-------RQRAAGQAPHVLARAQVVVNTHRMERRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F +T+LP + + D+ L +L P + ++R LEL +LI + Sbjct: 57 ALF---DAGPATLLPRVSLVTDL------TALGAVTHLPPAIPPLRRRLELVQLITRLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + PD+ A+ L+ +LA +ID ++ E + AL W Sbjct: 108 QQPDLAAR-------------ASIFDLSDSLAALIDEMQGEGVSPAIIRALDVSDQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ IA Y EL+ + + AE ++ + P+I+AGSTGS Sbjct: 155 ARAQQFIAIAEHYLRSGDDELDV--QARQRRVVEALIAEWALRPPEHPVILAGSTGSRGT 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D P +W+ + + T HPQ+ A+L+ Sbjct: 213 TMLLMEAVARLPQGAVVLPGYDFDQPERVWDGLEDAL--------TAEDHPQFRFARLMA 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L++ + + + R+ ++S + P +D ++ ++ I D+ L Sbjct: 265 RLNLTPDQIAPWSDDVAPCPARNRLVSLALRPAPVTDAWMSE--GPQLEGIDTATRDITL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 IEA + R+EA++IA+ LR + ++ + +ALIT DR L R+V L R+ I D SAG+PL Sbjct: 323 IEAASPRDEALAIALRLRQAAED-GQSAALITPDRMLTRQVSAALDRWNILPDDSAGLPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + D A+ +++KHPL G LEL R Sbjct: 382 HLSPPGRFLRHVAALFSARLDGEALLSVLKHPLCHTGEGRNEHLLHTRDLELDLRRNGPP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + DL + + + T V Sbjct: 442 FPGVGDLAAFAT------------------------------RREVPEGWTNWVARCFCD 471 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600 G L + DW + + +LW ++ G+ ++ + + E + Sbjct: 472 QHVTGTLPLIDWVDRLRQLAEALSAGTEGGTGSLWEQKAGQEALAIVTALADEAPHGGEM 531 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +A ++ D++ L+ V+ + + I GTLE+R++ + LILGGLNEG WP++ A Sbjct: 532 DARDFADLLGGLLSTGEVRDRDAPYPGIMIWGTLEARVMGAELLILGGLNEGSWPESPAP 591 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R M+ D L E+ IG +AHDF+ A G + TR+ R ++ T+ SRWL RL Sbjct: 592 DPWLNRRMRHDAGLLLPERRIGLSAHDFQQAIGAPEVWLTRAKRSDDAETVPSRWLNRLT 651 Query: 721 VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L GG ++ RG+ +L L+ + RP P PPL A+PR S + Sbjct: 652 NLLQGLPDQGGAAALSEMRARGRRWLSMAEALEEAPRSAPAPRPSPRPPLAARPRQLSVT 711 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 EIK+LI DPYA+YAR +L+L + + PD RG + H I+ ++ + Sbjct: 712 EIKKLIRDPYAIYARHVLRLKPLDPLVQAPDALLRGIVIHEILESFVRDSVLDMALLNRD 771 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + E+ P +W +++ +FL EE ++ I + ++ Sbjct: 772 TFLKRAATMLEELVAWPTARALWLARLDRVADAFLLSEEARRADAGPIAFEARMRKQLDG 831 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + LTG ADRID + G + + DYKTG P ++ Q D QL +EAA + G F ID Sbjct: 832 LDFTLTGRADRIDRTERGSLCLYDYKTGAPPSEKQ-QAKFDRQLLIEAALAEEGGFEGID 890 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 VA +I + +K D E + L +++ +Q F + R Sbjct: 891 PAPVARAVFIGMGGSYKEVPAPLD------AEPPARVWAELHQLIGAYFEPDQGFTAR-R 943 Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037 + K + +YDHLAR EW Sbjct: 944 MLHKDSDAGDYDHLARFGEWDRSA 967 >gi|154250593|ref|YP_001411417.1| double-strand break repair protein AddB [Parvibaculum lavamentivorans DS-1] gi|154154543|gb|ABS61760.1| Double-strand break repair protein AddB [Parvibaculum lavamentivorans DS-1] Length = 1001 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 300/1053 (28%), Positives = 481/1053 (45%), Gaps = 72/1053 (6%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M N+FT+ P +PF + LL+ + LA +TI +PT+R+++ L Sbjct: 1 MRADSLNLFTMPPGTPFLERLAATLLDDPSLGGRFKGSPE---LAEITILLPTRRSVRAL 57 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL----LSYNLNPPVSNIQRLLELARLI 116 F+ +LP I++LGDV EE D + L P + ++R L LAR+I Sbjct: 58 GEAFLRAGAGAPLLLPSIRTLGDVDEEDLILDPRGLGREALELPPAMPALERQLRLARMI 117 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 + A+ LA +L +D++ TE L L + Sbjct: 118 VE------------------GQGGDETRALALAADLGHFLDMVLTEGADLTRLADLVPQD 159 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGS 235 + W + DFLK+ + W E L L + L+RA+AE GP+I AGS Sbjct: 160 FADHWQITIDFLKVLTARWPEELARLGHMEQAERRNLLLRAQAEAWTAAPPPGPVIAAGS 219 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGSIPATA L+ VA+ P GA+VLP LD + WN I + T +HPQY Sbjct: 220 TGSIPATAALLGVVAHLPMGAVVLPALDLDLDEESWNIIGKPGTA---------SHPQYG 270 Query: 296 LAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + KLL L R DV S + R ++S++ P +T++ + +++ Sbjct: 271 MKKLLAHLRATRADVGIWPGAERSAALRSRGRLLSEALRPAETTERWLGRLGALD-GDVK 329 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 +ALIEA +ER+EA ++A+ +R L+ K +AL+T DR LARRV +EL R+ I++ Sbjct: 330 DGLKGLALIEAPSERDEAGAVALLMRDVLERPGKTAALVTPDRKLARRVAMELRRWKIDV 389 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + S G PL+ T + L + N + + + + +KHPLA G LE+ Sbjct: 390 NDSGGEPLAKTAPVAFLRLVANMVTEDLAPVPLLACLKHPLAAAGEEPAKFRARVRRLEM 449 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + + L++ D +L+D I + I P Sbjct: 450 HLLRGPRPAPGLDGLRAACRALEDK---------------PGDSGEISILLDKIERSIAP 494 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKII 592 L+ + + + + V + + LW E G+ + +++ Sbjct: 495 LLN------AATKKGTATSIVEAHVEAAERLAASATETGAERLWKGEAGEAAADFIRELM 548 Query: 593 ETGSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 E + + L+ G ++P+ + S LFI G LE+RL + D +ILGGLNE Sbjct: 549 EATPAFGDIDPRFYPHFFDVLLSGRVLRPRWGRHSRLFIWGPLEARLQHADRMILGGLNE 608 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 G WP +P+L+R M++ + L+ E+ IG AAHDF TR+L+ PT+ Sbjct: 609 GTWPAEANIDPWLNRPMRATMGLEPPERRIGLAAHDFAEGASAGEAFLTRALKVEGAPTV 668 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASRW RL L + Q + W KLD K RP+P PPLEA+P+ +S Sbjct: 669 ASRWWLRLASLLQGLEQEEAVSAPQ-WWQWAHKLDEPAKVLTPLRPRPVPPLEARPQRFS 727 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 +EI+ LI DPYA+YAR+IL L + D +RGT+ H + + ++ Sbjct: 728 VTEIETLIRDPYAIYARKILGLKVLDPLDADIAAAERGTIIHEALEKFVEAYPRDLPENA 787 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + + + F + P + W F +I+ +++E++ ++ + I ++ I Sbjct: 788 LQELINVGEEAFRQAIGRPGVAAFWWPRFLRIAKWIVDYEQEERAGLRHIHAETRGEILI 847 Query: 892 ESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + + L+G ADRID + G V+I DYKTG P + + + PQL LEAA + G F Sbjct: 848 AELAQPVVLSGKADRIDEREDGMVNIVDYKTGTVPSIKQVEIGLTPQLPLEAAMMARGGF 907 Query: 950 -----SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + I K A+L Y+RL + + + +L++ + L++++ + Sbjct: 908 RTKDGAPIPPAKAASLIYLRLTGGETAGEVRAIPDEGA--DLADNTYAWLVDLLRQYEAE 965 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 P++S R +YDHLARV EW Sbjct: 966 TTPYLSRPRPMFWGR-YGDYDHLARVKEWSAAG 997 >gi|114762247|ref|ZP_01441715.1| hypothetical protein 1100011001331_R2601_14950 [Pelagibaca bermudensis HTCC2601] gi|114545271|gb|EAU48274.1| hypothetical protein R2601_14950 [Roseovarius sp. HTCC2601] Length = 976 Score = 564 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 275/1047 (26%), Positives = 455/1047 (43%), Gaps = 91/1047 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VF +AP F ++ L R + P +A V + V T R + +R Sbjct: 4 PSAAPRVFAVAPGIDFPEALVAGL-------RTRMEGQPPEAMARVELIVNTTRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F +T+LP I+ L +V D + +L PVS ++R LEL L+ + Sbjct: 57 QIFDR---GPATLLPRIRLLSNVA------DPIALAHLPAPVSPLRRRLELTGLVSGLLD 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ LA +LA ++D ++ E ED+ AL W Sbjct: 108 AQPDLAPR-------------TALFDLADSLATLMDEMQDEGVSPEDIAALDVSDESGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A FL I +Y+ E + ++AL + ++ + P+I+AGSTGS Sbjct: 155 QRALSFLNIVQRYFDS--AEDAPDTTSFRRLALKQRLSDWEVNPPSHPVILAGSTGSRGG 212 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P G +VLPG D P ++W+ +T+ + HPQ+ AKL++ Sbjct: 213 TNELMRAVARLPQGELVLPGFDFDTPESVWHGLTDALAS--------EDHPQFRFAKLIN 264 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L ++ DV R R+ +IS + P +D + +P++ D+ L Sbjct: 265 DLGMQAGDVLRWSEAEPPSAARNRLISLALRPAPVTDQWRDE--GPMLPDLIAATEDLTL 322 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA ++R+EA +IA+ LR + +E +ALIT DR L R+V L R+ I D SAG PL Sbjct: 323 VEAASQRDEATAIALRLRQAAEE-GVTAALITPDRMLTRQVTAALDRWNILPDDSAGTPL 381 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + A+ TL+KHPL G RA LEL + Sbjct: 382 QLSPPGRFLRHVSTLFQHDLTAEALLTLLKHPLCHSGHDRGEHLRATRELELHIRNKSWP 441 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 +++ V ++ V + Sbjct: 442 YPRPELIRAWG-------------------------------VAAEMESWANWVADSFCQ 470 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKA 600 G ++SDW + + + + + LW E G+ ++ + E G Sbjct: 471 PPRRGKRALSDWIEDHIARAEAIAAGPQGEDSELWKEAAGRKARAVVEGLRDEAGFGTDL 530 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +A ++ D+ ++ ++ + + I GTLE+R++ D LILGGLNEG WP+ Sbjct: 531 DARDYGDLFAAILQQHELRDRDAPHPRILIWGTLEARVMGADLLILGGLNEGSWPELPGA 590 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R M+ L E+ IG AAHDF+ A + TR+L+ ++ T+ SRWL RL+ Sbjct: 591 DPWLNRRMRHKAGLLVPERRIGLAAHDFQQAVAAPQVWLTRALKSDDAETVPSRWLNRLM 650 Query: 721 VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L G +K RG +L R L+ P RP P PP+EA+PR+ S + Sbjct: 651 NLMNGLPDRSGPQALAAMKARGGHWLALARALERPQPSPPATRPSPAPPVEARPRSLSVT 710 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 EIK LI DP+ +YA+R+L+L + ++ PD RG L H ++ E +K+ ++ + Sbjct: 711 EIKHLIRDPFHIYAKRVLRLAPLNPLQRAPDALLRGILIHEVLEEFVKESLSDPSQLTTE 770 Query: 834 LMKQIIDSHFE--KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + + + + P +W+ +++ F E E Q+ I I Sbjct: 771 ALLRRTTALIGDPERVPYPTTRHLWQARLGRVAEWFAETERARQAIARPAHFEIMGHAEI 830 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 ++G L G ADRID+ G + DYKTG P + Q+ D QL LEAA ++ G+F Sbjct: 831 PALGFTLRGKADRIDIDDRGGAHLYDYKTGAAPTESQ-QRHFDKQLLLEAAMVERGAFKD 889 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + R ++ + + + + +++ ++ ++ + + Sbjct: 890 LQPRHTEQAVFVSVANNPREVPAPLE------EMPAQQVWAEFETLMARWFEPDRGYTAR 943 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYD 1038 L + ++ SEYDHL+R EW + Sbjct: 944 AALVREKDL-SEYDHLSRFGEWDVVDE 969 >gi|209883636|ref|YP_002287493.1| double-strand break repair protein AddB [Oligotropha carboxidovorans OM5] gi|209871832|gb|ACI91628.1| double-strand break repair protein AddB [Oligotropha carboxidovorans OM5] Length = 1066 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 301/1058 (28%), Positives = 477/1058 (45%), Gaps = 38/1058 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +F I S+PF R ++ AL +G L+E F NP LA T+Y+PT+RA + R F++ Sbjct: 11 RLFNIPSSAPFLRTLLTALADGRLIEGFEAR-KNPERLAEATLYLPTQRACRMAREVFLD 69 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNLNPPVSNIQRLLELARLILIWRN 121 + + + +LP I +LG V E++ S N+ + + R L L RL+ W Sbjct: 70 VMEQDAVLLPRIVALGHVDEDELAFAQDEATEFPSLNVPDALDGLPRRLVLMRLVSAWAK 129 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 +L P + PA+ + LA +LA +ID + T W L+ L + +W Sbjct: 130 RLGSRELASAP----LVAGGPASTLALADDLARLIDDMTTRGVDWHALNTLVPDDLDQYW 185 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + DFLKIAS+ W L E PV + L+ AEA + GP I AGSTGS+P+ Sbjct: 186 KITLDFLKIASEAWPAHLRESELIEPVARRDLLIAAEAARMAAAP-GPFIAAGSTGSMPS 244 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAKLL 300 TA+ + VA HP GA+VLPGLD + W I + + + S+HPQY+L LL Sbjct: 245 TAKFLHAVAQHPQGAVVLPGLDTDLDDEAWRAIGGVRDSTGRFAEHPLSSHPQYALHGLL 304 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDV 359 D + R+ V+ L S +GR ++ S++ P + + + + + I+ F ++ Sbjct: 305 DVFGVDRKAVRALAEPSA--HGRELIASEAMRPARETAQWHHRLADPDVTTRIEAGFDNL 362 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A++EA N EA++IA A+R + + K +AL+T DR LARRV L R+ + D S G Sbjct: 363 AIVEAANPEMEALAIATAMREA-RQFGKTTALVTPDRALARRVMAALGRWQLPYDDSGGD 421 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T + + L+KHPL + G P ++A LEL LRG Sbjct: 422 SLMDTPAGIFARLAAETVTSELAPPTLLALLKHPLLRLGAPAGGWTKATANLELAVLRGT 481 Query: 480 KNSYDIMDLKSLVL-------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + + L++ + + H ++RL+ +D E A +D ++ + Sbjct: 482 RPAPGCKGLQAAFAAFVEEWSKTQRKELSTLHPSEPRARLTPDDIESATRALDALVSALA 541 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 PL + + T ++ + + L+ + Sbjct: 542 PLESVVRGTHDFATLAQRHYETITHLSRDNDGLIAAFAGTDGQQLASAFNELAPPNENDV 601 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + I A ++ D+ V+ + L I G LE+RL D +ILGGL EG Sbjct: 602 PAPTHIALEAADYPDLFATAFANRVVRRPENSDAALRIYGLLEARLTQCDRVILGGLVEG 661 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP +P+LSR M+ +L L E+ IG AHDF G + +I T + + P +A Sbjct: 662 VWPPAPRIDPWLSRPMRHELGLDLPERRIGLTAHDFAQLLGAKEVIITHATKVGGAPAVA 721 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 SR+L R+ + GT + +KRG Y+ + LD +P P PP+ +P S Sbjct: 722 SRFLHRMKAIAGTKAWTEAEKRGADYVRYAEALDAPDSITPVAQPAPTPPVALRPLQMSV 781 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI+ + DPY ++A+RILKL + DRG+ HN + + +K +I Sbjct: 782 TEIEDWLRDPYTIFAKRILKLTLLDPVDLPLTAADRGSAIHNALGDFTQKHSKTLPEDIV 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 ++ + HF P +W F +I+ F E + ++ +I ++AI Sbjct: 842 AELRFCGEEHFAALMAHPEARALWWPRFLRIADWFAGWELRRRAETVEIAAEQRGEIAIP 901 Query: 893 ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 L+ ADRI+L I DYKTG P + Q + PQL+LEAA L+ G F Sbjct: 902 LGDGREFRLSARADRIELRADRTFAIIDYKTGQPPSNKQVQLGLSPQLTLEAAILRGGGF 961 Query: 950 SQIDCR-----KVANLFYIRLKQKFKIDC------ITNDKKKYSADELSEKSLKNLIEIV 998 V+ L Y+RL D+ ++ +L L ++ Sbjct: 962 RHAFASLPANPSVSELVYVRLSGNNPAGKEQIVNLTPKGGDVQLPDDAADAALAKLTALI 1021 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 + +Q + S L L+ S+ YD LAR+ EW Sbjct: 1022 RKFDDPKQAYNS-LALAMWSDRYGVYDDLARIKEWSVA 1058 >gi|146337256|ref|YP_001202304.1| helicase-exonuclease type V family protein AddB subunit [Bradyrhizobium sp. ORS278] gi|146190062|emb|CAL74054.1| putative helicase-exonuclease type V protein family, addB subunit [Bradyrhizobium sp. ORS278] Length = 1048 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 302/1060 (28%), Positives = 482/1060 (45%), Gaps = 49/1060 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ S+PF R +I AL++G LV+ F +P LA+ T+Y+PT+R+++ R F++ Sbjct: 2 RVFTVPISAPFLRSVIAALVDGRLVDGFEAR-SDPARLATATLYLPTRRSLRVAREMFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119 + +LP + +LGD+ E++ L + ++QR L LARL+ W Sbjct: 61 ELRTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLELPERLDDLQRRLTLARLVAAW 120 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 P S + PA+ + LA +LA +ID I T W+ L L ++ Sbjct: 121 AKT---------PVSAPLVIGGPASTLALAGDLARLIDDIVTRGVSWDALDQLVPDQLDK 171 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +W + +FL+IA W L E+ P + L+ AEA L GP+I AGSTGS+ Sbjct: 172 YWQFSLEFLRIARTAWPAYLQEIERIEPAARRDLLIAAEAARLSAHPDGPVIAAGSTGSM 231 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK-STNITSSNTTYSTHPQYSLAK 298 PATA+ + VA P+GA+VLPGLD + A W++I + HPQY++ Sbjct: 232 PATAKFLLAVAKLPHGAVVLPGLDTDLDEAAWSSIGGAKDRSGRVITPPAVNHPQYAMHL 291 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFS 357 LL ++R DV RL GR ++IS++ P + + + + + + NI + Sbjct: 292 LLRRFGLERRDVLRL--APPGRGGREVLISEAMRPSEATAIWHERLRQFDIAANIAEAMD 349 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +++++ A N EA++IAIA+R + K +AL+T DR LARRV LTR+ + D S Sbjct: 350 NLSVVAAPNPEMEALAIAIAMREA-RHLGKSAALVTPDRALARRVMAALTRWHLTFDDSG 408 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T A + + + L+KHPL + G A LEL LR Sbjct: 409 GDALLETPAGIFARLAAEAAARGLEPPTLLALLKHPLCRLGRNAYGWKHAIETLELALLR 468 Query: 478 GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 G + L + + ++ H ++RL + + A L+ + Sbjct: 469 GTRPQAGTGGLARDFARFRDEHAKLHQGEASSLHRAEPRARLKPDQLDQAAALIAQLQTA 528 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + PL ++ ++ L + D+ + + +G L+ F Sbjct: 529 LAPLENL-----ASPRPQDFAELAARHREVLIALSTDDVGLGTA-FTDRDGAALARCFDD 582 Query: 591 IIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++ +G + A ++ D+ V+ + L I G LE+RL+ D +I+GG Sbjct: 583 LLASGERCGLMAPLSDYPDLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQTDRMIIGG 642 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 L EG+WP +P+LSR M+ L L E+ IG +AHDF G +I T + + Sbjct: 643 LVEGIWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGA 702 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 P +ASR+L RL + G + RG+ Y+ + LD + +P P PPLEA+P Sbjct: 703 PAVASRFLHRLQAVAGDAQWKAATARGETYVRYAEVLDQPREVKPIPQPAPKPPLEARPL 762 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S + I+ + DPY ++AR IL+LD + DRG+ H I E + + Sbjct: 763 RMSVTAIEDWLRDPYTIFARYILRLDPLDPVDMPLSAADRGSAIHEAIGEFTQTFAKELP 822 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 H ++ I + HF P +W F +I+ F E + I I I + Sbjct: 823 LHPAHALRVIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWETARREHIGAITAEIRGE 882 Query: 889 MAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + I L+ ADRI+ G I DYKTG P + + + PQL+LEAA L+ Sbjct: 883 IGIPLGKDRTFMLSARADRIEQRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILR 942 Query: 946 AGSFSQIDCRK-VANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEI 997 G F I ++ L Y+RL I D+ ++++ L E+ Sbjct: 943 EGGFDGIPAGSLISQLVYVRLSGNNPPGEERILELKINKSDTPQHPDQAAQEARNKLEEL 1002 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + ++ Q + S L LS +N YD LAR+ EW Sbjct: 1003 IRSFEDVNQGYTS-LNLSMWANRYGSYDDLARIKEWSAAG 1041 >gi|115522489|ref|YP_779400.1| hypothetical protein RPE_0461 [Rhodopseudomonas palustris BisA53] gi|115516436|gb|ABJ04420.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas palustris BisA53] Length = 1049 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 315/1059 (29%), Positives = 487/1059 (45%), Gaps = 44/1059 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFTI PS+PF R +I AL++G LV F P LA+ T+Y+PT+RA + R F++ Sbjct: 2 RVFTIPPSAPFLRRLITALVDGELVPGFEARTQ-PERLATATLYLPTRRAGRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTAD-------LLLSYNLNPPVSNIQRLLELARLILIW 119 + + + ILP I +LGD+ E++ + ++ P + ++R L LA+L+ +W Sbjct: 61 VLQRDAAILPRIVALGDIDEDELAFAQEADPLGGAAALDVPPALGELERRLTLAQLVAVW 120 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 +L P + PA+ I LA +LA +ID + T W+ L L + Sbjct: 121 AKQLKPGDPAAAP----LVVGGPASTIALATDLARLIDDMATRGVDWKQLDGLVPDALDR 176 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +W L+ DFLKIA ++W L E P + L+ AEA+ L GP+I AGSTGS+ Sbjct: 177 YWQLSLDFLKIARQWWPAFLQERGRIEPALRRDQLIDAEAKRLAAHPTGPVIAAGSTGSM 236 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAK 298 PATAR ++ +A P GA+VLPGLD + A W I + + + S HPQ++L Sbjct: 237 PATARFLAAIARLPQGAVVLPGLDSDLDDAAWALIGGHQDSQGQTLAPPSSNHPQFALHA 296 Query: 299 LL-DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCF 356 LL D L I+R DV LG S GR ++ S++ P + + + E + I Sbjct: 297 LLRDHLKIERRDVVPLGEPSP--TGRELLASEALRPSTATARWHQRLQEPAVEARIAAGM 354 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 +++I ADN EA+SIA+ALR + D + +AL+T DR LARRV L R+ + D S Sbjct: 355 QTLSVIAADNSEMEALSIAVALREA-DALGRTAALVTPDRALARRVMAALGRWNLPFDDS 413 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G L T A + + L+KHPL + G + RA LEL L Sbjct: 414 GGDALVDTPVGIFARLAAEAATTGLEPATLLALLKHPLLRLGAAQGTWQRAIETLELAVL 473 Query: 477 RGNKNSYDIMDLKSL-------VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 RG + L + + + H +++L + + A LL+ + Sbjct: 474 RGTRPPAMSSGLAQEFSRFRVELAKLRRGEPSLLHRAEPRAQLRDAALDQAELLITRLAA 533 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + PL T + + ++++ + L + D + L + + Sbjct: 534 ALAPLETLQAAQQ-----FDLAEFARRHCEVLIALSSDADGLVAALDGPQGSVLAGAFDE 588 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 S + A ++ + L V+ + L I G LE+RL + D LILGGL Sbjct: 589 M--PASSGVTALPRDYPEAFAALFADRIVRRPEAVGARLRIYGPLEARLTHCDRLILGGL 646 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 EG+WP +P+LSR M+ L L E+ IG +AHDF G +I T + + P Sbjct: 647 VEGIWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGHDEVILTYAAKVGGSP 706 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 +ASR+L RL + G + + RGQ YLD+ LD K +P P PP A+PR Sbjct: 707 AVASRFLHRLEAVAGETRWKDAVARGQTYLDYAHALDRPDKIEPIAQPAPRPPRAARPRK 766 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S + I+ + DPY +YA+ ILKL + DRG+ H I E + Sbjct: 767 LSVTAIEDWLRDPYTIYAKHILKLIPLDPVDMPLSAADRGSAIHAAIGEFTETYATSLPQ 826 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + L++ I HF P +W F +I+ F E + + ++ + + Sbjct: 827 DSAALLRAIGRRHFAPLMQRPEAAALWWPRFLRIADWFANWETERRLNVSSVITEQSGSL 886 Query: 890 AIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 I L+ ADRI+ + DYKTG+ P + + + PQL+LEAA L+A Sbjct: 887 TIALDHDREFVLSARADRIERRTDRTFALLDYKTGNPPSAKQVRMGLSPQLTLEAAILRA 946 Query: 947 GSFSQIDC-RKVANLFYIRLKQKFKID-------CITNDKKKYSADELSEKSLKNLIEIV 998 G F+ I V+ L Y++L + S D+ + ++ L E++ Sbjct: 947 GGFADIPAGASVSELVYVKLSGNNPPGNECVLELKRDRSEPVQSPDDAASEARAKLEELI 1006 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 ++ P+ S L L+ SN YD LAR+ EW Sbjct: 1007 RKFEDEATPYTS-LDLAMWSNRYGSYDDLARIKEWSAAG 1044 >gi|86136734|ref|ZP_01055312.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193] gi|85826058|gb|EAQ46255.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193] Length = 985 Score = 556 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 276/1052 (26%), Positives = 455/1052 (43%), Gaps = 96/1052 (9%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF + F R + L+ R P LA V + + T R ++ R Sbjct: 6 PQDSPRVFAVPNGVDFPRALAQGLIE-------RSTSQPPEGLARVDLILNTSRMMRRCR 58 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F E + +LP ++ L D+ E L + +L+ Sbjct: 59 NLFEE---GPALLLPRMRLLTDLAREANLQGLPPPLPPLRRRLELSQLI----------A 105 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 KL D DL S + L+ +LA+++D +++E E + L W Sbjct: 106 KLLDAQPDLAARS---------SLYDLSDSLANLVDEMQSEGVSTEVIRNLDISDMSGHW 156 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ I ++ ++ + + A+ ++ + P+I+AGSTGS Sbjct: 157 ARAQQFIGIVDQFIDLHSDTVDV--QARQRQMVENLIAKWQVEPPQHPVILAGSTGSRGT 214 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM +A P GA+VLPG D P +W + + T+ HPQY AKLL Sbjct: 215 THMLMEAIARLPQGAVVLPGYDFEQPAEVWTHLRDALTS--------EDHPQYRFAKLLS 266 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ +V+R R+ ++S + P + ++ K+ + K +DV L Sbjct: 267 DLDMTPREVRRWSPDEPVSPARNRLVSLALRPAPVTHAWMSE--GPKLTQLDKACADVTL 324 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA N R EA++IA+ LR + +E K +ALI+ DR L R V L R+GI D SAG+PL Sbjct: 325 VEAPNPRGEALAIALRLRQAAEE-GKTAALISPDRMLTRLVSAALDRWGILPDDSAGLPL 383 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF----GFPEKYLSRAKNALELVALR 477 T L + + A+ TL+KHPL R EL R Sbjct: 384 QLTPPGRFLRHVAELFCRPLTADALLTLLKHPLTNDGSSAEAARGEHLRHTRDYELDLRR 443 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 D + ++R +L + D + Q Sbjct: 444 NGPPFPDAESFAAFGMER----------------------DLILGWTDWLSQNFAD---- 477 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLD----EHRKLPNLWFEEEGKTLSSLFSKI-I 592 L ++DW L + + + LW ++ G +FS + Sbjct: 478 ----QQVTTPLPLTDWVALLRARAEAIAAGSQVQAEGESGTLWEKKAGIEALKIFSNLEA 533 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 E + +A ++ D+++ ++ V+ + ++ I GTLE+R+ D +ILGGLNEG Sbjct: 534 EAEHGGEMSARDFADLLSAILSQGEVRDRDTPYGSIMIWGTLEARVQGADLVILGGLNEG 593 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 WP+ +P+L+R ++ L E+ IG +AHDF+ A + TR+ R + T+A Sbjct: 594 SWPEAAKPDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPEVWLTRAARSDEADTVA 653 Query: 713 SRWLQRLLVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 SRWL RL L GG D ++ RGQ +LDW L+ T+ P RP P PP+ + Sbjct: 654 SRWLNRLTNLLSGLPDQGGKAALDAMRARGQEWLDWAEALEQPTELPSAPRPSPRPPVAS 713 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 +PR + +EI +LI DPYA+YA+ +L+L + ++PD RGT+ H I + I+ + Sbjct: 714 RPRRLTITEIPRLIRDPYAIYAKHVLRLRPLNPLVQEPDALLRGTVVHEIFEDFIRDSLE 773 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + + + + E++ P ++W +++ F+ E+ QS + + Sbjct: 774 DPSRLTADHLIETARALLERDVPWPVARLLWLSRIQRLAGDFILAEQSRQSRATPLKLEA 833 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + +E + + ADRID + GF+ + DYKTG P + QK + QL +EAA + Sbjct: 834 MGEARLEPLDFTIACRADRIDQDERGFLHLYDYKTGAPPSEAQ-QKKFEKQLLIEAAMAE 892 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 G+F +I +VA +I L K D+ K + L +++ + Sbjct: 893 EGAFKEIGPAEVARAAFIGLGSNLKDVPAPLS------DQPPAKIWEELKQLIGAYFEQD 946 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 Q + S R+ + +I +YDHLAR EW Sbjct: 947 QGYSSR-RMVHRDDIAGDYDHLARFGEWDRSA 977 >gi|328545811|ref|YP_004305920.1| Double-strand break repair protein AddB [polymorphum gilvum SL003B-26A1] gi|326415551|gb|ADZ72614.1| Double-strand break repair protein AddB [Polymorphum gilvum SL003B-26A1] Length = 1053 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 350/1055 (33%), Positives = 534/1055 (50%), Gaps = 26/1055 (2%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 +K +F+I PS+PF ++ AL++GTL+E+FR +PL L++ T+Y+PT+RA + L Sbjct: 4 PGRKGCLFSIPPSAPFAHTLVRALVDGTLIESFRPIE-DPLSLSTATLYLPTRRAARTLP 62 Query: 62 SEFIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + F E+ G + +LP I+ LGDV E E+F L PP+ ++R L L RL++ W+ Sbjct: 63 AVFQEVFGGRPVLLPAIRPLGDVDEIEQFLRAEPDGEPLPPPLPALERRLALTRLVMAWK 122 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 L + L P+ PL LP S A+A WLA +L ++D +ETEE W L L + Y + Sbjct: 123 GALRRDVLRLKPDDPLGLPASAADAAWLAADLLALMDEVETEEVDWSQLVGLVPDDYARY 182 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALM-RAEAEHLMKGTKGPIIIAGSTGSI 239 W + DFL I W L E A P + AL+ R GP+I+AGSTGS+ Sbjct: 183 WQITLDFLSIVRDAWPAYLAERGAMDPKARRSALIRREAERLRRAPPAGPVIVAGSTGSV 242 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS---------TNITSSNTTYST 290 PATA L+ VA PNGAIVLP LD + A W + + + Sbjct: 243 PATAELLQVVAGLPNGAIVLPALDMELDDASWTALGGPLPSRIGAIGRPAGVAETPSVPG 302 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNE-MYGRSMVISKSFLPPDTSDMRNTDILENKI 349 HPQY L LLD L + R+ V LG + R ++S++ P +TSD + + Sbjct: 303 HPQYGLKLLLDRLGLGRDRVAPLGGPETADLALRDRIVSEALRPAETSDAWTGFLERTPL 362 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 + SDVAL+ A NE EEA+++A+ LR +++ + +AL++ DR LARRV +L R+ Sbjct: 363 AARRAALSDVALLSARNEVEEALAVAVVLREAVER-GETAALVSPDRMLARRVAEDLGRW 421 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 GI +D SAG PL T + + + + + +L+KHPLA+ G + + A Sbjct: 422 GIAVDDSAGRPLDQTPPAILAGLAARLALEGCAPIDLLSLLKHPLARLGLTAREIRAAAR 481 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 ALE LRG + L L + + H P W+ D LVD + Sbjct: 482 ALERGVLRGPRPLPGTKGL-VLAVVAARDAAESDHTPRWRKLYD-ADWVAVADLVDRLAH 539 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + PL K++ + L + +DE L+ E G L+ + Sbjct: 540 ALEPLEALAEAKDAL----PVETLAAAHAEVLYRLAVDEAGTDAELYSGETGDALALFLA 595 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++E G + EW + L+ G V+ ++ + ILG +E+RLL D ++LGG Sbjct: 596 GLLEAGGAGLCIVPAEWPSVFAALMSGTAVRRRLPGDPRIQILGPMEARLLRPDLVVLGG 655 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNEGVWP+ T +P+L+R M+ DL L E+ IG AAHDF G R ++ R+ R + Sbjct: 656 LNEGVWPQRTRNDPWLNRPMKRDLGLDPPERRIGAAAHDFAQGLGARRVVLARAERADGA 715 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQP 767 PT+ASRWLQRL+ L G + + RG+ YL LD RP+P P L A+P Sbjct: 716 PTVASRWLQRLVTLVGPEIEAEMTARGRTYLRLAGLLDRPEGPVRPASRPEPRPALPARP 775 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S +EI++L+ DPYA++ARRIL L+ + P D+GTL H+ + + Sbjct: 776 KRLSVTEIERLVRDPYAIFARRILGLEPVDPVGGVPGAADKGTLIHDALARFLTDWDGPY 835 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + +I ++ F + P I +W F +I+ F+ E + + + F+ I Sbjct: 836 DDSAVRRLVEIGETMFSPLDAFPAIRALWWPRFERIARGFVAFEAARAAGLRERFLEIGG 895 Query: 888 KMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + + I LTG ADRIDLL G + DYKTG P L+ PQL LEAA ++ Sbjct: 896 GVDLALPGIEFRLTGRADRIDLLDDGTYAVIDYKTGQVPSGNQVATLLAPQLPLEAAMIR 955 Query: 946 AGSFSQIDCR-KVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 G F+ + V++L YI+LK + + T + S ++L+E++ K L +V + Sbjct: 956 RGGFADVPAGRPVSDLLYIQLKGAREALKVETRAPRDGSVEDLAEEAWKRLEALVAAYAD 1015 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + ++S R+ ++ + YDHLARV EW + Sbjct: 1016 PARGYLSRARVLQERAMDGPYDHLARVREWSVGSE 1050 >gi|90421910|ref|YP_530280.1| hypothetical protein RPC_0386 [Rhodopseudomonas palustris BisB18] gi|90103924|gb|ABD85961.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas palustris BisB18] Length = 1042 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 303/1058 (28%), Positives = 481/1058 (45%), Gaps = 50/1058 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF S+PF R +I AL+ G LV F NP LA T+Y+PT+RA + R F++ Sbjct: 2 RVFNTPASAPFLRTLIAALVEGRLVPGFEAR-ANPERLAEATLYLPTRRAGRMAREIFLD 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTA-------DLLLSYNLNPPVSNIQRLLELARLILIW 119 + + +LP I +LG + E++ D + S + P ++ + R L LARL+ W Sbjct: 61 VLQSDAVLLPRIVALGGIDEDELAFADDAEPFDGVASLEIPPNLAELDRRLILARLVAAW 120 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 +L + PA+A+ LA +LA ++D + T + +W L L ++ Sbjct: 121 GKELA-----------PLVVGGPASALALAGDLARLMDDMVTRKVEWAALDGLVPDELDN 169 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +W L FLKIA ++W L P + L+ AEA+ L GP+I AGSTGS+ Sbjct: 170 YWQLTLGFLKIAREHWPAYLAANALIEPAARRDLLIEAEAKRLAAHHTGPVIAAGSTGSM 229 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE-KSTNITSSNTTYSTHPQYSLAK 298 PATAR + +A P GA+VLPGLD H+ W I + N + S HPQY+L Sbjct: 230 PATARFLRAIAALPQGAVVLPGLDTHLDDDAWRKIGGIRDANGKAVTPPSSNHPQYALHA 289 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFS 357 LL+ I+R DV LG GR ++ S++ P + + + + E + NI + Sbjct: 290 LLETFGIERRDVAPLGA--PAPRGRELLASEAMRPSNATAQWHQRLAEPAVEQNIAAGMT 347 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 ++A+I ADN EA++IA+A+R + + N K +AL+T DR LARRV L R+ + D S Sbjct: 348 ELAVISADNPELEALAIAVAMRQARELN-KSAALVTPDRALARRVMAALGRWKLPFDDSG 406 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T A + + L+KHPL + G + A LE LR Sbjct: 407 GDALIDTPPGVFARLSAQAATAQLEPATLLALLKHPLLRLGQAPGFWRGAIETLEQAVLR 466 Query: 478 GNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 G + + L + + + + H ++RL+++ + A L+ + Sbjct: 467 GTRPAAGSAGLSRDFARFRDELGKLRRRETSMLHGSEPRARLNDDALDRAQALIAQLQTA 526 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + PL T N+ L SD + + D+ + + + Sbjct: 527 LAPLETLDPNR-----PLDFSDLATKHRAVVAALSRDDDGFVAAFDGPQG--NALNTAFD 579 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + S + A ++ ++ V+ +S++L I G LE+RL D +ILGGL Sbjct: 580 DLPAPSGLAAQPGDYTELFQTAFADRVVRRPEAESASLRIFGPLEARLTQCDRVILGGLV 639 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EG+WP +P+LSR M+ L L E+ IG +AHDF G +I + + + P Sbjct: 640 EGIWPPAPRSDPWLSRPMRHQLGLDLPERRIGLSAHDFAQMLGADEVILSHAAKVAGAPA 699 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 +ASR+L RL + G + + + RGQ YLD+ LD K +P P PP +A+P Sbjct: 700 VASRFLHRLEAVAGAERWKAAEARGQIYLDYAHALDRPDKVVPITQPMPRPPRDARPLQL 759 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + I+ + DPY +YA+ ILKL + DRG+ H + E + + Sbjct: 760 SVTAIEDWLRDPYTIYAKFILKLAPLDPVDMPLSAADRGSAIHEALGEFTQVFAQALPDD 819 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 ++ I HF P +W F +I+H F E + + ++ + ++ Sbjct: 820 PAAALRAIGQKHFAPLMERPEARALWWPRFLRIAHWFATWETERRLNVAGVDAETRGTLS 879 Query: 891 IES---IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I L+ ADRI+ I DYKTG P + + + PQL+LEAA L+ G Sbjct: 880 IPLDATRRFVLSARADRIERRADRTFAILDYKTGRPPTGKQVRMGLSPQLTLEAAILREG 939 Query: 948 SFSQIDCR-KVANLFYIRLKQKFKIDCI-------TNDKKKYSADELSEKSLKNLIEIVT 999 F I V+ L Y++L ++ D+ + ++ L ++ Sbjct: 940 GFEGIAAGSSVSELVYVKLSGNNPPGEEKILELKRDRAEEALFPDDAAIEARAKLEALIR 999 Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + P+ S L L +N +YD LAR+ EW Sbjct: 1000 KFDDATTPY-SSLNLPMWANRYGDYDDLARIKEWSAAG 1036 >gi|300023816|ref|YP_003756427.1| double-strand break repair protein AddB [Hyphomicrobium denitrificans ATCC 51888] gi|299525637|gb|ADJ24106.1| double-strand break repair protein AddB [Hyphomicrobium denitrificans ATCC 51888] Length = 1038 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 298/1051 (28%), Positives = 479/1051 (45%), Gaps = 40/1051 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 N+FT+ P PF + + A+LNG L P + L L ++T+ +PT+RA + R F+ Sbjct: 4 NIFTLPPGVPFLKAVARAILNGDLPAPGGAAP-DLLKLPNITLLLPTRRAARTARDAFLS 62 Query: 67 ITGKKSTILPIIKSLGDVVEEKF--------TADLLLSYNLNPPVSNIQRLLELARLILI 118 + + I+P I+ + + +++ + + P + + R L L +LI Sbjct: 63 VANTPAIIMPRIRPISEGDDDRSLISSLAGDGLSSASALDQPPAIDPLDRTLVLMQLISH 122 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 WR + D S +PA + LA L ++D IE E D+ L E Y Sbjct: 123 WRATMAQSDADRSSGS------TPAQSARLAAELGKLMDDIERENVSLSDIQNLVPETYA 176 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTG 237 W DFLKI +++W L +SP + AL+ AEAE + K +I+AG TG Sbjct: 177 EHWQKTVDFLKIVTEFWPAHLEASGMTSPEARRNALILAEAERIAKLAPDEIVIVAGITG 236 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 SIPAT LM VA P+GAIVLP LD + A W+ I + + HPQ+ L Sbjct: 237 SIPATVELMRAVAARPSGAIVLPALDQSLDDASWSAI----------VSGHPEHPQFGLK 286 Query: 298 KLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 KLLD L+++R V L + RS +S+S P ++D + ++K Sbjct: 287 KLLDGLNVERGAVLTLPGFEAGDVDRTRSAFVSESMRPSSSTDQWHRYATTADKGELEKA 346 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 + ++LIEA + ++EA ++A+ LR +++ + +AL++ DR LARRV + L +GI +D Sbjct: 347 LAGISLIEAPSAQDEAETVALILREAIETPGQTAALVSPDRLLARRVAIRLEAWGIRVDD 406 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 SAG P + T+ + L ++ A+ L++HPL + F + + ALE+ A Sbjct: 407 SAGRPFAKTVPGAFLALVIGAMVSEFAPAETMALLRHPLCRLKFNAFDIRKYARALEISA 466 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R + + + +++ + + + RL ED + A LV + PL Sbjct: 467 FRTSYLGHGLDGIRAALETAERDRAEKKRMHPAARRLWSEDCDGARELVARLAAAFQPLA 526 Query: 536 TYKTN--KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + L + LW E G T S F+K+++ Sbjct: 527 DLYAANGDQTLAEFARAHAEAAEALAQLPDDDAAAEASANPLWQGESGDTASRFFAKLLD 586 Query: 594 TG-SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + +A ++ D+ L+ E V+ + + I G E+RL D L+LG LNEG Sbjct: 587 DATPAVAISAADYADLYATLLARENVRERTAVHPRISIWGPFEARLQQPDVLVLGSLNEG 646 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 WP+ +L+R M+ DL L + E+ IG+AAHDF G + + TR+ + + +PT+ Sbjct: 647 TWPEAAEPGAWLNRPMRRDLGLPSPEEEIGRAAHDFTSLLGAKTIYLTRAEKVDGVPTVP 706 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYS 771 SRWL R+ L +++ + +L W R D K+ K P+P P L +PR S Sbjct: 707 SRWLMRMRALLKGMKLESVLVADKPWLAWARARDRIVGKRIAIKPPEPRPALALRPRRMS 766 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 ++I++ I +PYA YAR ILKL+ +P PD + RG L H++++ ++ + Sbjct: 767 VTDIERWIANPYATYARHILKLEPLPPLGASPDASLRGALVHDVLSRFANAFPDRLPDDP 826 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 +++I + I W + F E EEK + + + I + + Sbjct: 827 LAELEKIAADVLQTYTGNARIAAFWMPRLKRFLSWFAEGEEKRREGVRSVIAEISGALVL 886 Query: 892 ESI--GIHLTGFADRIDLLKSGFVDIT-DYKTGDNPKKETAQKLIDPQLSLEAAALK-AG 947 LT ADRID +G I DYKTG PK+E + PQL LEAA Sbjct: 887 APTPDPFTLTARADRID--DTGSAVIITDYKTGAIPKQEWVENGRSPQLPLEAAIALGET 944 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 F + R V L YIR K L+ ++ + L ++ + P Sbjct: 945 GFPNLAGRTVEALRYIRASGGEPAGEERAIKS-NDIGTLAAQARQGLERLIAEFDDPATP 1003 Query: 1008 FISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + + R S + Y LARVAEW D Sbjct: 1004 YRALRRPSYSYD-YDAYAQLARVAEWSAHVD 1033 >gi|89067400|ref|ZP_01154913.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516] gi|89046969|gb|EAR53023.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516] Length = 977 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 255/1044 (24%), Positives = 423/1044 (40%), Gaps = 88/1044 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 +P VF + P F E++ L R L P LA V ++V T+R + LR Sbjct: 4 PASRPRVFALPPGVDFGAELVRGL-------RQRSADLAPDALARVELFVNTRRMQRRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + G T+LP ++ + D+ + L PPV ++R E+ RL+ Sbjct: 57 EVY---DGGPPTLLPRLRLVTDLALD-------PKAGLPPPVPPLERRFEILRLVGALLE 106 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 P + A L+ +LA ++D ++ E E LHAL+ W Sbjct: 107 SDPSLAPR-------------AALFDLSDSLAGLLDEMQGEGVDPEALHALEGTDQSEHW 153 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 F+++ +Y+ + + + P+I+AGSTGS A Sbjct: 154 QRTLAFVRVVERYFDAAGGTPDR--EARQRRVAEGLAERWGAQPPAHPLIVAGSTGSRGA 211 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T M VA P GA+VLPG D +P A+W + + T HPQ+ +LLD Sbjct: 212 TGLFMEAVARLPQGALVLPGFDFDMPAAVWRGMGDGL--------TAEDHPQFRFKRLLD 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L+I DV+ + R+ ++S S P +D T+ + +++ + + L Sbjct: 264 RLEILPRDVEPWTDTGPASPARNRLVSLSLRPAPVTDAWLTE--GPALGDMRAATAGLTL 321 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA R EA +IA+A+R ++++ + ALIT DR L R+V L R+ I D SAG PL Sbjct: 322 VEAPTPRAEAETIALAMRQAVED-GRTVALITPDRMLTRQVSAALDRWDITPDDSAGQPL 380 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L + I + + +L+KHPL G A LEL R Sbjct: 381 PQSPPGRFLRHVAALISERVTGETLLSLLKHPLCHSGGDRGPHLLATRELELHLRRHGPP 440 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L+ + E A L + P Sbjct: 441 FPTAESLRGW----------------GGGHRNPERTPWAEWLAGVLETIPQP-------- 476 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600 ++D + + + LW E G+ + + + + Sbjct: 477 ----AERPLADHLGAHMAIAEALAAGPDGGAGELWDEAAGRKALEIRAALEASAGAAGVL 532 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++D+ T +++G V+ + I GTLESR+ D +ILGGLNEG WP+ A Sbjct: 533 TTRNYVDLFTGVLNGAEVRNPTAGHPLVQIRGTLESRVQGADIVILGGLNEGTWPEVPAP 592 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R M+ + L E+ IG +AHD++ A + TR+ R + T+ SRWL RL Sbjct: 593 DPWLNRTMRHRVGLLLPERRIGLSAHDYQQAIAGPEVWLTRARRSDEAGTVPSRWLNRLT 652 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDY--------TTKQPHYKRPKPFPPLEAQPRTYSF 772 L + + + + RP P PP+ A+PR S Sbjct: 653 NLLEGLTTTHGPEALAAMRARGAAVVAQAAAIVRAPDRIEPAPRPSPAPPVAARPRQLSV 712 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 ++I++LI +P+ +YAR++L+L + PD RG + H + ++ ++ + P Sbjct: 713 TQIQRLIRNPFHIYARKVLRLQALDPLVPGPDALMRGNILHAALEAFVEADVDPSLPWAR 772 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + P +W +++ FLE E + + + + ++ + Sbjct: 773 RTLLAKTEEALADACPWPAHRRLWFARMERVADWFLETEAERRRRGRPAHLEVSGEITLH 832 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + L G ADRIDL G + DYKTG P + +K D QL LEAA + G+F + Sbjct: 833 DLELTLRGKADRIDLTPEGRAILYDYKTGTPPSQPQQEK-FDKQLLLEAAMIARGAFEGL 891 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 A+ +I L K I D + E++ + + + S Sbjct: 892 GRLVAADAQFIGLGAKPAIVSAPLDAAPPDV------VWEEFRELIRAWRTPTKGYSSWA 945 Query: 1013 RLSEKSNIQSEYDHLARVAEWREE 1036 + + +YDHLAR EW Sbjct: 946 FPFSERDR-DDYDHLARRGEWDPS 968 >gi|182679137|ref|YP_001833283.1| double-strand break repair protein AddB [Beijerinckia indica subsp. indica ATCC 9039] gi|182635020|gb|ACB95794.1| double-strand break repair protein AddB [Beijerinckia indica subsp. indica ATCC 9039] Length = 1076 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 289/1089 (26%), Positives = 483/1089 (44%), Gaps = 80/1089 (7%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFTIAP SPF + + AL +G +++ F +P LA TIYVPT+RA + L E Sbjct: 5 KVFTIAPGSPFLKTFVTALKDGKIIDGF--TIADPFALAKTTIYVPTRRAARALADELAN 62 Query: 67 ----------ITGKKSTILPIIKSLGDVVE------------EKFTADLLLSYNLNPPVS 104 + +LP IK G + E + +++ L +L S Sbjct: 63 SLIFSSPGSGAAVPSAMLLPRIKPFGGIEETETSLLFDRATLDDPSSEDSLLEDLPLAAS 122 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESP--------LSLPISPANAIWLAKNLADII 156 I R ++L LIL W L I + P+ S+ S +A L+ LA +I Sbjct: 123 EIGRRMQLTELILKWAEALNHAIVRIGPDGTIESDTTERFSVARSVTDAWHLSGQLAQLI 182 Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 D + E+ W L L ++ +W + +FL IA + W E E ++ L+ Sbjct: 183 DELIIEDITWSQLDPLVLPEFDAYWRITMNFLNIAIESWPEICSEQGWIDAAKRRVLLLA 242 Query: 217 AEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 EA L +G +GP+I GS G T+ L++++A P GA++LPGLD + A + I Sbjct: 243 REARKLDEGTAEGPVIALGSPGFNRTTSALLASIARAPQGAVILPGLDQDLDEAAFKMID 302 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 HPQ +LL L + R+DV LG +S + R +S++ P D Sbjct: 303 H----------ESFGHPQAVYVRLLPILGVTRQDVMPLGEMSPMLIRRHGFLSEALRPAD 352 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395 T+D T + N ++ S + +IEA +ER+EA+++AIALR L+ K +AL+T D Sbjct: 353 TTDEWITYQVRNVSTDLADALSGITMIEAQDERQEALALAIALREILETPGKTAALVTPD 412 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 R LARRV+ EL R+ I ID S G PL+T+ + L I D +A L+ + Sbjct: 413 RELARRVRTELLRWNIEIDDSGGDPLNTSPRGLLARLALACITSGMDAKDLAALLANEQV 472 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + E+ LR D + L +T+ ++R+ E Sbjct: 473 SLGLGRDRIKALAPQFEIAILRSAPVM-RFFDQPDIALTMARDAAFDTYAHPAKARIEAE 531 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL------DEH 569 D + +++ + ++PL + G ++ W L + + Sbjct: 532 DWDGLAQILERLRDVLSPLRALR-------GTWPLARWIAAHRMVLDGLVRDADQTDGQD 584 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 ++ L E+ L +LF ++ T + + + T + ++ L Sbjct: 585 QQDRTLEAGEDAAALEALFDELSGTTPQGLLFDVASYAAFFTDISGEVRLRGPRRAHPRL 644 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 ILG +E+RL+ D ++LGGL+E +WP + FL+R M++ L L E+ +GQA HDF Sbjct: 645 KILGLIEARLMQADVMLLGGLDETIWPPAAQMDAFLNRPMRAALGLTPPERRLGQATHDF 704 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 A G +I +R+ + PT+ASR +QR+ L G D + + ++G+ +L + LD T Sbjct: 705 TQAMGAESVILSRAKKRGGTPTVASRLIQRMAALAG-DVWQSCLEQGERFLAFAEALDRT 763 Query: 749 -------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 Q RP P PP+ +P S ++I+ L DPYA++A +IL L + Sbjct: 764 PINPADHRPQRPLGRPNPKPPVGLRPTHLSVTQIETLRRDPYAIFAEKILGLKALDALGA 823 Query: 802 DPDRTDRGTLFHNIITELIKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 DR D G H ++ K +++ + + P Sbjct: 824 GADRRDDGMAVHAVLERCGKLHPTGPLPADMDEQLLSWLREALAARLDDPDFSAFQWPRL 883 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITD 917 K +L E + + ++ +I V ++ I + LT ADR++ + + + D Sbjct: 884 QKAIDVYLAFEAERRDNLVRIEVETFGRLPIDLADGSRFLLTARADRLEFHRDQSLVLVD 943 Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ---------K 968 YKTG P + + + PQL+LEAA K G+F + Y++L + Sbjct: 944 YKTGAPPSSKEIRTGLAPQLTLEAAMAKRGAFGSDAIAQAYGGLYLKLGGADGGQVRPVE 1003 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 F N + + D+++E+ + L+ ++ ++ + S L + +++ YDHLA Sbjct: 1004 FSSGRGKNKDQSIAFDDVAEQHFQGLLILLNQFRDPATGYPSRLAP-KFAHVPLPYDHLA 1062 Query: 1029 RVAEWREEY 1037 RV EW + Sbjct: 1063 RVNEWAQGG 1071 >gi|288959561|ref|YP_003449902.1| double-strand break repair protein [Azospirillum sp. B510] gi|288911869|dbj|BAI73358.1| double-strand break repair protein [Azospirillum sp. B510] Length = 988 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 282/1039 (27%), Positives = 470/1039 (45%), Gaps = 74/1039 (7%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P +++I +PF + ++ +P+ LA VT+ +PT+RA + L++ F+ Sbjct: 4 PKLYSIPAGAPFVDRLAAGIMERV--------GGDPMALAGVTVLLPTRRACRSLQAAFL 55 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTAD----LLLSYNLNPPVSNIQRLLELARLILIWRN 121 +G + T+LP + LG++ + + +L +S + R + LARLIL Sbjct: 56 RRSGGQPTLLPRMAPLGELDAGDLSLTEEELPDVPLDLPEAISPLNRQMTLARLIL---- 111 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 L + A A+ L +L +ID + TE ++ L +L E Y W Sbjct: 112 ------------GADGLSATTAQAVRLGADLGRLIDAVWTERAGFDKLESLVPEDYAEHW 159 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240 + FL+I ++ W L + P + + +A G +I AGSTGSI Sbjct: 160 QVTLKFLRIITEVWPAILESTGETDPAKRRNLALETQAALWQAAPPPGMVIAAGSTGSIA 219 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 AT L++ +A P GA+VLPGLD AIW+ I +HPQ+ L++L+ Sbjct: 220 ATTELLAVIARLPQGAVVLPGLDTGADDAIWDAI-----------AADESHPQHGLSQLI 268 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L + R++V + R+ +I+++ P T++ + + Sbjct: 269 RLLGVTRDEVWPWTDAPEPRGARARLIAEAMRPAATTEGWRELSGLD-----ASALDGLT 323 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 I+A EEA IA+ +R +L+ + +ALIT DRNL RRV + L R+GI ++ S G P Sbjct: 324 RIDAATSEEEAQVIALLMRHALETPARTAALITPDRNLGRRVAMALARWGILVNDSGGQP 383 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ T + L +A+ L KHP+A G A ALE + LRG + Sbjct: 384 LAHTAVGTYLRLTAELAASRVHPLALLALAKHPMAAGGRDSGDFRAAARALERIVLRGPR 443 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + + + + EE +E+ + + Q P Sbjct: 444 PAEGFDGILAALERADR-------------FDHEEQQEVLRGWLVDLGQRAAPF------ 484 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + G ++D + V +++ D+ LW +++G+ + +++ + Sbjct: 485 LEALAGETPLADLVRAHVAFCESLAADDGLEGKDRLWRQDDGEEAARFIHDLLDAAAGFP 544 Query: 600 A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A A ++ ++ L+ V+P+ LFILG +E+RL + D ILGGLNEG WP Sbjct: 545 AIPAKDYPALLDALMSARAVRPRYGLHPRLFILGPMEARLQHLDLTILGGLNEGTWPPAA 604 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 A +P++SR M+ + L + E+ +G +AHDF A G ++ TR+ R PT+ SRWL R Sbjct: 605 AADPWMSRPMRREFGLPSPERLVGMSAHDFAHACGAPEVVLTRAARVEGTPTVPSRWLLR 664 Query: 719 LLVLGGTDFFDN-LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 L + D +++RG C+L W R LD + P+P PPL A+PR S +EI+ Sbjct: 665 LETVLKALDLDGVIEERGACWLGWARGLDEPDRVRPVSAPEPRPPLSARPRKLSVTEIET 724 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + DPYA+YAR L+L + DP +DRG + H+ + ++ + + Sbjct: 725 WMRDPYAIYARHALRLRALDPIAADPGASDRGQIIHDTLDAFVRDHPGPLPHDALDRLIA 784 Query: 838 IIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESI 894 + F P + W F +++ F++ E + + + + +P ++ + Sbjct: 785 LGRERFGPLLRSHPDVWAFWWPRFERVAGWFVDLERERRPRLRPLATEVPGRLELSGPGG 844 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 LT ADRID G + + DYKTG P + PQL LEAA AG FS +D Sbjct: 845 PFALTAKADRIDRGPDG-LVVIDYKTGTPPSAREIELGFAPQLPLEAAIAAAGGFSGVDK 903 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 VA L + RL K L+E++ L ++ + + P+ S R Sbjct: 904 GAVAELAFWRLSGGDPAGE--EKPVKGDPAALAEEARAGLEALIARFDDPQTPYRSRPRP 961 Query: 1015 SEKSNIQSEYDHLARVAEW 1033 + + ++Y HLARV EW Sbjct: 962 AM-APRYTDYAHLARVQEW 979 >gi|163797152|ref|ZP_02191107.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199] gi|159177668|gb|EDP62221.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199] Length = 1005 Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 293/1048 (27%), Positives = 465/1048 (44%), Gaps = 63/1048 (6%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +++I PF + L +PL LA T+ +PT+RA++ F+ Sbjct: 5 RIYSIPVGVPFLDALALGLWAAV--------GEDPLALARATVLLPTQRAVRSAAEAFLR 56 Query: 67 ITGKKSTILPIIKSLGDVVEEKFT------ADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + + +LP ++++ DV E++ A + + +L P + ++R L LARL+L + Sbjct: 57 LGDGRPMLLPTLQAIADVDEQELDLAHGDDAGVAAALDLPPAIPALRRQLLLARLVLAYA 116 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 ++L ++ P SP A+ LA LA +ID ++ E +E L L +Y Sbjct: 117 DRLEADG--------VAAPRSPEQAVRLAAALAGLIDQVQAEGLAFEALTGLVPSEYAEH 168 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSI 239 W L FL I ++ W + L E A PV + ALMRA A P+IIAGSTGS+ Sbjct: 169 WGLTLRFLTIVTELWPKWLEEQGAVDPVVRRDALMRARATAWQAAPPSDPVIIAGSTGSV 228 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA LM+ V P G +VLPGLD ++W ++ T + HPQ+ L +L Sbjct: 229 PATAGLMTAVLGLPQGTLVLPGLDQDSDDSVWASVG-----------TDAAHPQHGLHRL 277 Query: 300 LDFLDIKREDVKRLGNVS---NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354 L L I R DV + R+ ++ ++ P T++ P+ Sbjct: 278 LVGLGIPRGDVGLWPGAATFVPATAARARMLREAMRPAATTEAWRMLATRPSEPDAPATG 337 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 F + +EA + REEA +IA+ +R L+ + +AL+T DR+LARRV EL R+ + +D Sbjct: 338 AFDGIRRLEAPSPREEAGAIAMLMREVLETPGRTAALVTPDRSLARRVASELERWDLTVD 397 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 SAG PL+ + ++ L + + + + + +KHPLA G R LE + Sbjct: 398 DSAGRPLAESAPAAFLRLIGDLAAEQAAPVPLLAALKHPLAAGGQAPDAFRRMVRRLERL 457 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 LRG + + L+ V E + ++ VD + + PL Sbjct: 458 VLRGPRPAPGFTGLRRAVEVLEDKHA--------------EARAGLLVWVDGLAGRLGPL 503 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + ++ D+ LW + G+ L+ LF ++ + Sbjct: 504 LDTLNRPAVAATEMA----DAHARAAEALAQSDQQSGADRLWRGDAGEALARLFDEMRDA 559 Query: 595 GSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + W + L++ V+P+ L ILG LE+RL FD +ILGGLNEG Sbjct: 560 LDALEPVPGRAWPGLFEALLESRVVRPRWGAHPRLHILGALEARLQRFDRVILGGLNEGT 619 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP + A +P++SR M+ D L E+ IG AAHD MA G ++ TR+ R PT+ S Sbjct: 620 WPADPAPDPWMSRPMRRDFGLPAPERRIGLAAHDVSMAFGAPEVVLTRATRVEGTPTVPS 679 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 RWL RL + + + + W +LD K P P PP+ +PRT S + Sbjct: 680 RWLLRLETVARALGAEAEFRSDPAPVAWHGQLDRPASVEPGKAPLPCPPVHVRPRTLSVT 739 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 I + DPY++YA RIL L + DP+ +RG HN + + P+ Sbjct: 740 RIDTWLRDPYSIYASRILDLRALDDLDSDPNAAERGNAIHNALDAFVAAYPRDLPPDPLQ 799 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + + F P + W F +++ F+E E + + ++A+ Sbjct: 800 RLLEYGQASFADHLDRPGVWAFWWPRFERVAAWFVEVERDRRRGLSATVTEQKGRLAVPG 859 Query: 894 --IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 LTG ADRID + G I DYKTG P K + PQL LEA L G F Sbjct: 860 PAGDFTLTGIADRIDRMGDGTYAIVDYKTGGYPSKNDLKNGAAPQLPLEALILAGGGFPD 919 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + V++L Y R+ I + + EL ++ L ++ + + P+ S Sbjct: 920 LPVAPVSSLAYWRVGGGDPPGAIDAVESGVA--ELVAEAEAGLRTLIATFDDEQTPYHSV 977 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYDI 1039 K ++Y HLAR+ EW + Sbjct: 978 PDAGRKPRF-NDYAHLARIGEWAAGDED 1004 >gi|260575781|ref|ZP_05843777.1| double-strand break repair protein AddB [Rhodobacter sp. SW2] gi|259021934|gb|EEW25234.1| double-strand break repair protein AddB [Rhodobacter sp. SW2] Length = 979 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 263/1046 (25%), Positives = 440/1046 (42%), Gaps = 91/1046 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VF +AP F +++ L R P +A V +YV T R + + Sbjct: 7 PDPGPRVFAMAPGVDFPAQLVAGL-------RQRLQGQPPEAMARVQLYVNTTRMARRIT 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + LP I + D+ + A + + ++R L+L +L+ + Sbjct: 60 GLFT---ATGAGFLPHIGLVTDLSQHVALA------GIPAAIPPLRRRLQLTQLVARLLD 110 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ A L+ +LA ++D ++ E E + AL + W Sbjct: 111 AQPDLAPR-------------AALYDLSDSLATLLDEMQGEGVSPETIAALDVSDHSAHW 157 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 F+ I ++ + ++ + AE GP+I+AGSTGS Sbjct: 158 QRTQKFMAIVLPFFASTSRPD---AETRQRLVVQALAAEWQKNPPPGPVIVAGSTGSRGT 214 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA M VA P GA+VLPG D +P A+W + + T HPQY +LL Sbjct: 215 TALFMQAVARLPQGALVLPGFDFDMPAAVWQGLGDALTG--------EDHPQYRFHRLLS 266 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ DV+ V+ R+ +IS S P +D + + ++ + + + L Sbjct: 267 GLDLSPTDVQPWTAVNAPSPARNRLISLSLRPAPVTDQWLIEGKR--LHDLAQATAAMTL 324 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I A R EA++IA+ LR + ++ K +AL++ DR L R+V L R+GI D SAG PL Sbjct: 325 IAAPTPRAEALAIALILRQAAEQ-GKVAALVSPDRGLTRQVTAALDRWGILPDDSAGRPL 383 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + + +L + + A+ TL+KHPL G R LEL + Sbjct: 384 ALSAPGRLLRHVAALFGQRMTCEALLTLLKHPLTASGTDRGEHLRFTRDLELKLRKYGPP 443 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L + + +L D ++Q + + Sbjct: 444 FPSAAMLTDWA--------------------ARQSDPAVLLWADWLVQALDGVEDV---- 479 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHR-KLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599 GN ++D + + + LW ++ G+ + ++ E Sbjct: 480 ----GNRPLADHVAQHLALTEALARGPAGLGTGELWLKKPGEAALAAVQELAREAPYGGD 535 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ D+ ++ V+ ++ + I GTLE+R+ D +ILGGLN+G+WP+ Sbjct: 536 LTPADYRDLFEAILAKGEVREDVQSHPQIMIWGTLEARVQGADLVILGGLNDGIWPQMPP 595 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M+ L E+ IG +AHD++ A ++ T + R T+ SRWL RL Sbjct: 596 PDPWLNRQMRQKAALLLPERRIGLSAHDYQQAIAATEVVLTHATRNAEAETVPSRWLNRL 655 Query: 720 LVL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-RPKPFPPLEAQPRTYS 771 L GG ++ RG +L L+ RP P PP+EA+P + Sbjct: 656 QNLLRGLPGQGGPQALAAMQARGATWLRLAEALETPAATVPAANRPAPRPPVEARPAQLA 715 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + I+ LI DPYA+YAR IL+L + ++ PD RG+L H I+ +++R + E Sbjct: 716 VTGIRTLIRDPYAIYARTILRLKKLDPLRQTPDARLRGSLLHAILQRFVQERPAETRAEA 775 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + +I D ++ P +WR + + + + +A+ Sbjct: 776 RLRLLEISDQVMAEQAPWPAARALWRARLERAADF--FLAADAAQGGTSVILESGGAIAL 833 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 + +LT DRID L G + I DYKTG P ++ Q + QL LEAA + G+F+ Sbjct: 834 APLPFNLTAKPDRIDALPDGRLHILDYKTGTPPTEKQ-QAQFEKQLLLEAAMAERGAFAP 892 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 I R+VA + Y+ L K+ + +EL K ++L +++ Q + + Sbjct: 893 IGARQVARISYVGLGTSPKL------VETEVTEELLGKVWEDLHKLIARYLTRAQGYAAR 946 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEY 1037 R + +YDHLAR EW Sbjct: 947 -RAVFEERFPGDYDHLARYGEWETSD 971 >gi|310817178|ref|YP_003965142.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25] gi|308755913|gb|ADO43842.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25] Length = 972 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 267/1045 (25%), Positives = 432/1045 (41%), Gaps = 94/1045 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 ++ +F + P + F +I L + R P A VT+YV T R + LR+ Sbjct: 4 DESARLFGLPPGADFPAALIAGLHD-------RMAGRAPEDWARVTLYVNTARMQRRLRN 56 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + + ILP I+ + D+ + A +L PV +QR LEL RLI Sbjct: 57 LFDQ---GGAMILPRIRLVTDLALDPVAA------DLPLPVPALQRRLELTRLIARLLES 107 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PD+ A LA +LA ++D ++ E + + AL W Sbjct: 108 APDLAPR-------------AALYDLADSLAALMDEMQGEGVSPDVIAALDVSDQSGHWQ 154 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPA 241 +FLKI S Y+ + Q ++ H PIIIAGSTGS A Sbjct: 155 RTLEFLKIISGYFDQ----TGQPDREARQRMVIERLVAHWQIAPPTDPIIIAGSTGSRGA 210 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D +P W I S HPQ+ K+ D Sbjct: 211 TQLLMQAVARLPQGAVVLPGFDFDMPDHAWEAIG--------SAVAAEDHPQFRFRKIAD 262 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + D++ + + R+ +IS S P +D + + ++ + + L Sbjct: 263 GLGLALHDIRPWTSSNAPDPARNRLISLSLRPAPVTDQW--RLEGKDLGDLNLATAQMTL 320 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA +IA+ LR +LDE + +ALIT DR L R+V L + + D SAG PL Sbjct: 321 LEAPSPRLEAQTIALRLRAALDE-GRTAALITPDRMLTRQVAAALDLWSVKPDDSAGQPL 379 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + +L + + D ++ +L+KHPL + LE Sbjct: 380 PLSPPGRLLRQVARLFGQRLDAESLLSLLKHPLTHADANRGQHLLNSHDLERYIRDRGMP 439 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L A + + ++ L T Sbjct: 440 FPTATALLKWAGQENA-------------------PDHRRAWAEWVIHFTNDLDRIST-- 478 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKA 600 +S + + + LW E G+ ++ + + + + Sbjct: 479 ------RPLSAHLAHLIDTAEEISRGP-----ALWEEAAGRKARAVIADLQLNAPHGGEM 527 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ I+ ++ G V+ L I GTLE+R+ D +IL GLNEG+WP +A Sbjct: 528 EPRDFTAILDGVLRGAEVRNPDTGHPNLLIWGTLEARVQGADLVILAGLNEGIWPGASAA 587 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R +++ L E+ IG AAHD++ A + +R++R ++ T+A+RW+ RL Sbjct: 588 DPWLNRALRARAGLLLPERRIGLAAHDYQQAIAAPEVWLSRAIRSSDAETVAARWVNRLT 647 Query: 721 VLG-------GTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSF 772 L G ++ +G +L + + P RP P PPL A+P S Sbjct: 648 NLLEGLPDQNGPAALAAMRAKGDAWLARASAMSQPDTRLPAAARPAPRPPLAARPTKLSV 707 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + I+ L+ DPYA+YAR +L+L+ + + D RGT+ H + + I + Sbjct: 708 TGIETLLRDPYAIYARHVLRLNALGPLNQSADARMRGTVIHKVYEDFINSGTAPDAAHAL 767 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 L+ Q + +++ P W + + FL+ E + Q+ + ++A+ Sbjct: 768 ALLDQFAIAALDEDCPWPVTARQWLSQIRRAAPYFLQTEGERQAKGTPTLLEKRGEIALG 827 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 L G ADRIDL G I DYKTG P ++ Q+ D QL +EAA + G+F QI Sbjct: 828 RHDFTLVGKADRIDLQPDGQALIYDYKTGAPPSAKS-QRYFDKQLLIEAAMIARGAFQQI 886 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 R VA +I L K D + + L +++ + + + + Sbjct: 887 GPRDVAGAEFIGLGSKLATVPAPLD------ELPPAQIWAELQQLIDAWMQYPRGYTARI 940 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 + S+YDHLAR EW + Sbjct: 941 AP-FEMKYASDYDHLARYGEWGDSD 964 >gi|126732964|ref|ZP_01748725.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37] gi|126706581|gb|EBA05657.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37] Length = 978 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 279/1043 (26%), Positives = 438/1043 (41%), Gaps = 93/1043 (8%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P VF + P F +I L R P +A V +YV T R + LR+ F Sbjct: 12 PRVFALPPGVDFPAALIDGL-------RARLAGRPPEAIARVELYVATDRMRRRLRNLF- 63 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 +++LP I+ L D+ +D L L PVS ++R LEL L+ PD Sbjct: 64 --DAGPASLLPRIRLLTDL------SDPLTRAALPAPVSPLRRRLELTGLVSRLLETQPD 115 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + + L+ +LA +++ + E + + L W A Sbjct: 116 LAPR-------------SALFDLSDSLATLMEEMHVEGVSPKTVANLDVTDQSGHWQRAL 162 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 F I Y+ + + ++AL + + P+IIAGSTGS T L Sbjct: 163 TFFNIVQHYFD---KDATPDAQAFNRMALELRLEAWEAQPPRHPVIIAGSTGSRGTTHAL 219 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 M VA P GAIVLPG D +P A+W+ + + T+ HPQY AKL+ L+I Sbjct: 220 MKAVARLPQGAIVLPGFDTDMPPAVWSKLEDPLTS--------EDHPQYRFAKLMRELEI 271 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 DV+ R+ VIS + P + ++ +PN+ DV L+EA+ Sbjct: 272 TARDVRPWTYGQPPSAARNRVISLAMRPAPVTHQWLSE--GPNLPNLPDAMQDVTLLEAN 329 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 ++REEA++IA+ LR + + +ALIT DR L R+V L R+ I D SAG P T Sbjct: 330 SQREEALAIALRLREAAEN-GTTAALITPDRMLTRQVTSALDRWDILPDDSAGTPAQLTP 388 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 +L + + +L+KHPL G LEL + D Sbjct: 389 PGRLLRLVAELFTAPLTAELLLSLLKHPLTHAGQDRGPHLLTTRELELHIRKTGLPYPDA 448 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L + R A A L D Sbjct: 449 ETLTAWATARDAD----------------RWGAWAATLCDR----------------QQT 476 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIE 604 G L ++DW + ++ + + LW E G+ L +L + E A + Sbjct: 477 GTLPLADWIERHLSLAEALTAGPDGDPAPLWAENAGRKLRALTETLQFEAEHGTDMTARD 536 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + D+ L+ E V+ + + I GTLE+R++ D LIL GLNEG WP++ A +P+L Sbjct: 537 YADLFGALVSREEVRDRDAPHPKILIWGTLEARVMGADLLILAGLNEGAWPESPAADPWL 596 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG- 723 +R M++ L E+ IG +AHDF+ A + TRSL+ + T+ SRW+ RL L Sbjct: 597 NRSMRAQAGLLLPERRIGLSAHDFQQAAAAPEIWLTRSLKSDEAETVPSRWINRLTNLLN 656 Query: 724 ------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 G + +++RG + + + +RP P PP ++P+ + I++ Sbjct: 657 GLPDRNGRKALEEMRERGAHWAALAAAAETPIEADPARRPSPAPPTISRPQELWVTSIRR 716 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L+ DPYA+YAR IL+L + + PD RG + H +I I++ + + Q Sbjct: 717 LVRDPYAIYARYILRLKALDPLMQAPDALMRGVVTHKVIETFIRETVADPDRLTPDRLMQ 776 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF--VNIPAKMAIESIG 895 I + P + +W + + F E E + +I ++G Sbjct: 777 IAR-VLLDDVPFPTVRALWLARVARFAPWFCESEADRRQRAAPHLDNFETEGAASIPALG 835 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 L ADRID+ + DYKTG P + Q D QL LEAA L+ +F I R Sbjct: 836 FTLKARADRIDIAPDAGAHVYDYKTGSAPSAKE-QLYFDKQLLLEAAMLQQSAFPNIAPR 894 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 VA YI+LK + AD +K+ + ++ + ++ + + L Sbjct: 895 YVAAATYIQLKPGD-----PKEVAAPLADSPPQKTWEEFCALIAAYLDEDKGYTARRALM 949 Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038 + ++I +YDHL+R EW D Sbjct: 950 KDTDIA-DYDHLSRFGEWDVTDD 971 >gi|146278984|ref|YP_001169143.1| exonuclease-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145557225|gb|ABP71838.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 1000 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 269/1043 (25%), Positives = 429/1043 (41%), Gaps = 96/1043 (9%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P +F + P F ++ L R P +A V +YV T+R + + Sbjct: 13 PRLFGLPPGVDFPAALVRGL-------RARMAGAPPEAMARVELYVNTQRMRRRVVELMT 65 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 LP I+ + ++ L PV ++R LELA+L+ PD Sbjct: 66 AEGAG---FLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEAQPD 113 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 I + L+ +LAD+ID ++ E E + L + W Sbjct: 114 IAPR-------------SALFDLSDSLADLIDEMQGEGVPPEAIARLDVADHSAHWQRTQ 160 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 F+ I + + + + ++ + R A P+I+AGSTGS TA Sbjct: 161 AFMAIVAPMFGADAPD----AQALARMTVERIAARWAEAPPDHPVIVAGSTGSRGTTALF 216 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 M VA P GA+VLPG D +P +W+ + + T HPQ+ +L+ + Sbjct: 217 MQAVARLPQGALVLPGFDFDLPAEVWDGLGDAL--------TAEDHPQFRFHRLMGLVGA 268 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 V R + R+ +IS S P +D T+ + ++ +ALIEA Sbjct: 269 APSQVHRWTDEDPPSPARNRLISLSLRPAPVTDQWLTEGQR--LTDLALAAEGMALIEAA 326 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 R EA+++AI LR + ++ +++ALIT+DR L R+V L R+GI D SAG PL+ + Sbjct: 327 GPRAEALAVAIILRKAAED-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGRPLALSA 385 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L + + A+ TL+KHPL G R LEL R Sbjct: 386 PGRFLRHVARLFGQRLTGEALLTLLKHPLTATGSDRGNHLRWTRDLELHLRRKGPPFPTG 445 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 DL + + I L Sbjct: 446 GDLDLWA--------------------GARPDDGVADWARWLGGLIEGLDAV-------- 477 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKII-ETGSCIKANAI 603 GN +SD + + + LW +E G+ + ++ E + Sbjct: 478 GNRPLSDHVAAHLALAEALAAGPAGTGTGELWLKEAGEAARAAVEELRREAPHGGELTTA 537 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 ++ D+ ++ V+ ++ L I GTLE+R+ D +ILGGLN+G WP+ +P+ Sbjct: 538 DYTDLFDAILARGEVREAVQAHPGLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPW 597 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL- 722 L+R M+ L E+ IG +AHD+ A ++ TR+ R T+ SRWL RL+ L Sbjct: 598 LNRQMRLRAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRNAEAETVPSRWLNRLMNLM 657 Query: 723 ------GGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSFSEI 775 GG + + ++ RG+ +L L+ P RP P PP+ A+P + + I Sbjct: 658 SGLKAQGGPEALEAMRARGRGWLALASALEQPEAPVPLAARPAPQPPVSARPDRLAVTGI 717 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HL 834 + LI DPYA+YAR IL+L + + PD RG++ H I+ E +K R Sbjct: 718 RTLIRDPYAIYARHILRLYPLDPLHRAPDARLRGSILHRILEEFVKDRAPGTDRAAERAR 777 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 + +I ++ E P +W + + FLE E + + ++ + + Sbjct: 778 LMRIAETVLTDEVPWPAARALWLARLDRAADFFLETEAAH--GGTPVVLEEEGRVDLAPL 835 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 LT DRID L G + I DYKTG P ++ ++ D QL LEAA + G F ++ Sbjct: 836 RFTLTAKPDRIDRLPDGRLHILDYKTGTPPTRKQQEQ-FDKQLLLEAAMAEHGGFRKLGP 894 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 VA + YI L K++ + D L + + L +V EQ ++S R Sbjct: 895 TDVARISYIGLGSSPKVESVETDAA------LLGQVWEGLHALVGRYLRREQGYVSR-RA 947 Query: 1015 SEKSNIQSEYDHLARVAEWREEY 1037 +YDHLAR EW Sbjct: 948 MFGERFPGDYDHLARFGEWEMSD 970 >gi|254563797|ref|YP_003070892.1| hypothetical protein METDI5474 [Methylobacterium extorquens DM4] gi|254271075|emb|CAX27082.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 1047 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 305/1055 (28%), Positives = 481/1055 (45%), Gaps = 34/1055 (3%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VFTI P +PF + AL++G LV +P LASVT+Y+PT+RA++ L Sbjct: 3 ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116 + + G + +LP + LG+ E + P + ++R L LARL+ Sbjct: 60 TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + + + E P +P SPA+A+ LA +L ++D + E W ++ A + Sbjct: 119 QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235 + ++ L DFLKIA+++W + L + + P L+ AEA+ L + G P+I+AGS Sbjct: 179 HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGS+PATARL++ VA P GA+VLPGLD H+ W I + HPQ Sbjct: 239 TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295 Query: 296 LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L L ++R DV+ LG++S E R ++S++ P +T+D ++ + Sbjct: 296 LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + +A++EA +EREEA+ A+ALR +L+ +AL+T DR LA RV EL R+GI Sbjct: 356 EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + SAG+ L+ + + + + L+ HP + G + RA ALE+ Sbjct: 416 EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + VP + RL D +LA ++D + + Sbjct: 475 GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 T + ++ + + + + TL LF + Sbjct: 534 FRTDLQPEIG-----NLVALAAGHREACERMMGGAEEGDADETDDPSLDTLDGLFDDLES 588 Query: 594 TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ T L TV + L ILG LE+RLL+ D ++LGGL+E Sbjct: 589 AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 VWP + FLSR M+ D+ L E+ IGQAAHDF GT + TR+ + PT+ Sbjct: 649 TVWPVRQTTDAFLSRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769 SR+LQRL GG + + RGQ +LD + P KRP P P P Sbjct: 709 PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI+ L+ DPY++YAR IL L+ + P +RG+L H ++ + + Sbjct: 769 LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828 Query: 830 EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + L+ I F + P + W + +++ +FLE E + + I K Sbjct: 829 DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888 Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + I L+ ADRI++ G I D+KTG P T PQL+LEAA L Sbjct: 889 VTIPLGERTFTLSARADRIEVRADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 G+F + +L YI + + + + E+ + L ++ Sbjct: 949 GAFEGLKAAAPPDLLYIYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 GE ++S + +EYDHLARV EW Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042 >gi|218532780|ref|YP_002423596.1| double-strand break repair protein AddB [Methylobacterium chloromethanicum CM4] gi|218525083|gb|ACK85668.1| double-strand break repair protein AddB [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 303/1055 (28%), Positives = 480/1055 (45%), Gaps = 34/1055 (3%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VFTI P +PF + AL++G LV +P LASVT+Y+PT+RA++ L Sbjct: 3 ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116 + + G + +LP + LG+ E + P + ++R L LARL+ Sbjct: 60 TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + + + E P +P SPA+A+ LA +L ++D + E W ++ A + Sbjct: 119 QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235 + ++ L DFLKIA+++W + L + + P L+ AEA+ L + G P+I+AGS Sbjct: 179 HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGS+PATARL++ VA P GA+VLPGLD H+ W I + HPQ Sbjct: 239 TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295 Query: 296 LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L L ++R DV+ LG++S E R ++S++ P +T+D ++ + Sbjct: 296 LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + +A++EA +EREEA+ A+ALR +L+ +AL+T DR LA RV EL R+GI Sbjct: 356 EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + SAG+ L+ + + + + L+ HP + G + RA ALE+ Sbjct: 416 EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + VP + RL D +LA ++D + + Sbjct: 475 GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 T + ++ + + + + TL LF + Sbjct: 534 FRTDLQPEIG-----NLVALAAGHREACERMMGGAEESDADEADDPSLDTLDGLFDDLES 588 Query: 594 TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ T L TV + L ILG LE+RLL+ D ++LGGL+E Sbjct: 589 AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 VWP + FL+R M+ D+ L E+ IGQAAHDF GT + TR+ + PT+ Sbjct: 649 TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769 SR+LQRL GG + + RGQ +LD + P KRP P P P Sbjct: 709 PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI+ L+ DPY++YAR IL L+ + P +RG+L H ++ + + Sbjct: 769 LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828 Query: 830 EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + L+ I F + P + W + +++ +FLE E + + I K Sbjct: 829 DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888 Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + I L+ ADRI+ G I D+KTG P T PQL+LEAA L Sbjct: 889 VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 G+F + +L Y+ + + + + E+ + L ++ Sbjct: 949 GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 GE ++S + +EYDHLARV EW Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042 >gi|163853835|ref|YP_001641878.1| double-strand break repair protein AddB [Methylobacterium extorquens PA1] gi|163665440|gb|ABY32807.1| double-strand break repair protein AddB [Methylobacterium extorquens PA1] Length = 1047 Score = 535 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 303/1055 (28%), Positives = 481/1055 (45%), Gaps = 34/1055 (3%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VFTI P +PF + AL++G LV +P LASVT+Y+PT+RA++ L Sbjct: 3 ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116 + + G + +LP + LG+ E + P + ++R L LARL+ Sbjct: 60 TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + + + E P +P SPA+A+ LA +L ++D + E W ++ A + Sbjct: 119 QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235 + ++ L DFLKIA+++W + L + + P L+ AEA+ L + G P+I+AGS Sbjct: 179 HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGS+PATARL++ VA P GA+VLPGLD H+ W+ I + HPQ Sbjct: 239 TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWDAIDGAGG---KHDEIAHGHPQAI 295 Query: 296 LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L L ++R DV+ LG++S E R ++S++ P +T+D ++ + Sbjct: 296 LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + +A++EA +EREEA+ A+ALR +L+ +AL+T DR LA RV EL R+GI Sbjct: 356 EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + SAG+ L+ + + + + L+ HP + G + RA ALE+ Sbjct: 416 EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + VP + RL D +LA ++D + + Sbjct: 475 GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 T + ++ + + + + TL LF + Sbjct: 534 FRTDLQPEIG-----NLVALAAGHREACERMMGGAEEGDADESDDPSLDTLDGLFDDLES 588 Query: 594 TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ T L TV + L ILG LE+RLL+ D ++LGGL+E Sbjct: 589 AEQEELPGRFSDYAAFFTALARDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 VWP + FL+R M+ D+ L E+ IGQAAHDF GT + TR+ + PT+ Sbjct: 649 TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--TTKQPHYKRPKPFPPLEAQPRT 769 SR+LQRL GG + + RGQ +LD P KRP P P P Sbjct: 709 PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQAAPPPRLKRPAPKPDPALFPER 768 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI+ L+ DPY++YAR IL L+ + P +RG+L H ++ + + Sbjct: 769 LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPA 828 Query: 830 EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + L+ I F + P + W + +++ +FLE E + + + I K Sbjct: 829 DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEARQRQGLHTIHAERSGK 888 Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + I L+ ADRI+ G I D+KTG P T PQL+LEAA L Sbjct: 889 VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 G+F + +L Y+ + + + + E+ + L ++ Sbjct: 949 GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 GE ++S + +EYDHLARV EW Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042 >gi|240141288|ref|YP_002965768.1| hypothetical protein MexAM1_META1p4882 [Methylobacterium extorquens AM1] gi|240011265|gb|ACS42491.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 1047 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 303/1055 (28%), Positives = 480/1055 (45%), Gaps = 34/1055 (3%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VFTI P +PF + AL++G LV +P LASVT+Y+PT+RA++ L Sbjct: 3 ASAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGGDPFALASVTLYLPTQRAVRALS 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116 + + G + +LP + LG+ E + P + ++R L LARL+ Sbjct: 60 TVLAQRLGG-AALLPRMIPLGEADEAELDLSSNTLLETPEDLLYPSIPALERRLILARLV 118 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + + + E P +P SPA+A+ LA +L ++D + E W ++ A + Sbjct: 119 QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIAAAVEAE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGS 235 + ++ L DFLKIA+++W + L + + P L+ AEA+ L + G P+I+AGS Sbjct: 179 HSRYFRLTLDFLKIAAEHWPDILAARSLADPTARARRLVLAEADRLFRERPGDPVIVAGS 238 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGS+PATARL++ VA P GA+VLPGLD H+ W I + HPQ Sbjct: 239 TGSVPATARLIAAVARLPRGAVVLPGLDLHLDAEGWEAIDGAGG---KHDEIAHGHPQAI 295 Query: 296 LAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L L ++R DV+ LG++S E R ++S++ P +T+D ++ + Sbjct: 296 LRALTGPRGFAVERRDVETLGDLSPEAVAREKLLSQALRPAETTDAWAGLDAAERMTLAR 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + +A++EA +EREEA+ A+ALR +L+ +AL+T DR LA RV EL R+GI Sbjct: 356 EGMAGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + SAG+ L+ + + + + L+ HP + G + RA ALE+ Sbjct: 416 EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + VP + RL D +LA ++D + + Sbjct: 475 GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDA 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 T + ++ + + + + + TL LF + Sbjct: 534 FRTDLQPEIG-----NLVALAAGHREACERMMGEADEGDADETDDPSLDTLDGLFDDLES 588 Query: 594 TG-SCIKANAIEWIDIITRLIDGETVKP-KIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ T L TV + L ILG LE+RLL+ D ++LGGL+E Sbjct: 589 AEQEELPGRFSDYAAFFTALSRDRTVACAQRSAHPRLRILGPLEARLLSVDRIVLGGLDE 648 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 VWP + FL+R M+ D+ L E+ IGQAAHDF GT + TR+ + PT+ Sbjct: 649 TVWPVRQTTDAFLNRPMRGDVGLSPPERRIGQAAHDFVQGLGTHDAVVTRAAKREGSPTV 708 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRT 769 SR+LQRL GG + + RGQ +LD + P KRP P P P Sbjct: 709 PSRFLQRLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKRPAPKPDPALFPER 768 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +EI+ L+ DPY++YAR IL L+ + P +RG+L H ++ + Sbjct: 769 LSVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSAAHPGALPA 828 Query: 830 EINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + L+ I F + P + W + +++ +FLE E + + I K Sbjct: 829 DAETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGK 888 Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + I L+ ADRI+ G I D+KTG P T PQL+LEAA L Sbjct: 889 VTIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMH 948 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 G+F + +L Y+ + + + + E+ + L ++ Sbjct: 949 GAFEGLKAASPPDLLYVYASGGREPFRPIPVKPPPGDARAVEAVVEEHWQRLRGLIARYM 1008 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 GE ++S + +EYDHLARV EW Sbjct: 1009 TGEAAYLSRP-YPQYERAYNEYDHLARVLEWSLAG 1042 >gi|90420585|ref|ZP_01228492.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] gi|90335313|gb|EAS49066.1| conserved hypothetical protein [Aurantimonas manganoxydans SI85-9A1] Length = 1043 Score = 532 bits (1371), Expect = e-148, Method: Composition-based stats. Identities = 354/1043 (33%), Positives = 529/1043 (50%), Gaps = 29/1043 (2%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 N+F+I P PF + LL+G +V +FRY +PL LA TIYVPT+RA + L EF Sbjct: 2 TANLFSIPPGRPFLATLAEGLLDGRIVPSFRYTG-DPLALAGATIYVPTRRAARALAGEF 60 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + G S ILP I+ +G+ E A +L P + ++R L+LARL WR+ Sbjct: 61 ARLLGTGSAILPAIRPIGESDEASQFAPEGERPSLEPSMGELERRLQLARLARQWRSVTR 120 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 + LP S A+A+WLA +L ++D +ETE L L + WW L Sbjct: 121 GREFEALIGEEAVLPASAADALWLAADLGALLDEVETEGTSLGKLAGLAPDALSDWWQLT 180 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATA 243 FL I ++ W + L E S + +RAEA+ L + GP+I+AGST + PAT Sbjct: 181 VTFLSIVTETWPQALAEAGRVSEATAKNVWLRAEAQRLRRDPGIGPVILAGSTATAPATI 240 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 LM +A+ +GA+VLPGLD H+ + I+ + + HPQY L +L Sbjct: 241 ELMHAIAHLEHGALVLPGLDRHLDPEAFAAISREGA------ISAPGHPQYGLKTILARF 294 Query: 304 DIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + E V L N + R ++ + P +T+ ++ + +AL+ Sbjct: 295 ALPPEAVTHLAPNEEPALTAREAFVADALRPAETTHRWRETARDH----GAEALDGLALV 350 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA++EREEA++IA A+R +L + +ALIT DRNLARRV EL RFGI + S G PL+ Sbjct: 351 EANDEREEALAIACAMRAALADPDATTALITPDRNLARRVVSELARFGIAANDSGGRPLA 410 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 T ++LT+L + D +A+ L+KHPL + G P RA A+E++ALRG+ Sbjct: 411 ATPPGTLLTTLAAVALQPGDPIALIALLKHPLTRLGMPAAEARRAARAIEMLALRGSVGI 470 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 D L ++V R + TH+P L E ++ELA ++ D + + PL + Sbjct: 471 PDGARLGAIVAARRRMLETATHMPRPVRILPEAERELAQIMADRLEAALEPLSALRD--- 527 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKAN 601 I+ + CL+ V D ++ EE G+ + S I+ Sbjct: 528 --GTEREIAAYATALTRCLEAVAADADEDASEVYAEEAGRAMVEFLSDIVRAPDTGFGFA 585 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + E D+I LI G TVKP+ S+ F+ GTLE+RL + D ILGGLNEG WP T Sbjct: 586 SRELGDVIDALIAGVTVKPRGGLSARAFVWGTLEARLQSVDMAILGGLNEGTWPGGTKSG 645 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 FLSR+M+ ++ L E+ IG AAHDF MA G R ++ TRS R P IASRWLQRL Sbjct: 646 AFLSRLMRREIALDPPERRIGLAAHDFWMAMGARKVVITRSRRAGGAPAIASRWLQRLTT 705 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP----HYKRPKPFPPLEAQPRTYSFSEIKQ 777 L G D L+ GQ YLD R+LD RP+P PPL+ +P +YS ++++ Sbjct: 706 LAGEDGTARLRAAGQTYLDHARRLDDAPADAGQDIRAARPEPRPPLDRRPTSYSITDVET 765 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 LI DPYA++AR+I+ L+ +P +DP +RG LFH+I+ +++ + + + + Sbjct: 766 LIRDPYAIHARKIMNLEPLPELMRDPHAAERGNLFHDILGRFVQRGHDPDAGDAEAEILA 825 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 I F++E LPP I+ +W + +F+ E + + I + Sbjct: 826 IARERFDEEMLPPDIEAVWWPRAESLCANFIAWERERGPRVATRHAEIGGAYDFTDLATT 885 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRK 956 L G ADR+D++ G +I D+KTG P A+ L+ PQL LE A K G+F+ Sbjct: 886 LRGRADRVDVMADGSTEILDFKTGTTPSVSQARALLAPQLPLEGAMAKLGAFADAGTASA 945 Query: 957 VANLFYIRLKQKFKIDCIT-----NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 +++L Y+RL+++ + + D LS+++L +V +N PF S Sbjct: 946 ISDLVYVRLRERTLYEDHLASDGGRKGEPVDPDALSDEALAKFRGLVANFRNAATPFRSR 1005 Query: 1012 LRLSEKSNIQSEYDHLARVAEWR 1034 R + YDHLAR EW Sbjct: 1006 TRPFIAGDFSGAYDHLARAQEWS 1028 >gi|23015052|ref|ZP_00054841.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum magnetotacticum MS-1] Length = 975 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 288/1043 (27%), Positives = 449/1043 (43%), Gaps = 76/1043 (7%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M + P VFTI P + F + LL +PL LA + I +PT+RA + + Sbjct: 1 MASMSP-VFTIVPGAAFVDTLAAHLLAE--------AEGDPLALADMEILLPTRRACRAM 51 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 F+ ++G + +LP ++ LGD+ EE+ ++ P V+ +R+L LARLIL Sbjct: 52 SDAFLRLSGGRPLLLPRLRPLGDMDEEELDLAGADPLDIAPAVTPTERVLILARLILTAA 111 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 + SP A+ LA LA ++D ++ E + DL L E+Y Sbjct: 112 QAQGGHVP------------SPDQAVRLASELAKLLDAVQVERLDFADLAKLVPEEYAEH 159 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSI 239 W + FL I ++ W L E P +M A+ E + + II AGSTGS Sbjct: 160 WQVTLKFLAILTEAWPGILAERGVLDPEDRLNRVMAAQIEAWRARPPRHKIIAAGSTGSR 219 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ VA P+G +VL GLD + W + HPQY L L Sbjct: 220 PATADLLAAVAGLPSGRVVLAGLDKAMDEESWAVLDPA-------------HPQYGLKAL 266 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 LD L ++R V+ L N + R +++++ P T + + + V Sbjct: 267 LDRLGVERHRVRPLTNDVDLRQDRVRLLAEALRPAATCEAW-----RDLPTLDPRVLDGV 321 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 ++A REEA +IA+ +R LD +AL+T DR LARRV EL R+GI ID SAG Sbjct: 322 WRLDAPTPREEAGAIALMMRRELDRTGHTAALVTPDRGLARRVAGELERWGIRIDDSAGR 381 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L + + L + + + A+ +KHPLA G LE +ALRG Sbjct: 382 SLGLSEPGAFLRLVAEMVAEDFAPHAVLACLKHPLAAGGLETGAFRALVRRLERLALRGP 441 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + + L+ + + P Sbjct: 442 RPAPGVAGLRQ-----------------------GVKDSRLAGWLADLETMAAPWPIGLK 478 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK-LPNLWFEEEGKTLSSLFSKIIETGSCI 598 + T ++D + + + + D+ LW E G+T + + + + Sbjct: 479 AEEGT-----LADLLRAHMEFAEWLATDDQLPGPARLWRGEAGETAARFAADLAAAAPAL 533 Query: 599 K-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + L+ G V+ + LFI G LE+RL + D LILGGLNEG WP Sbjct: 534 GVMAGRCYPALFDELMAGVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAP 593 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 +P++SR MQ+ L E+ IG AAHDF ++ TRS R + PT+ SRWL Sbjct: 594 PEADPWMSRPMQAAFGLAPPERRIGLAAHDFAQGFAAPRVVLTRSSRVDGTPTVPSRWLM 653 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL + + Q +L+W LD + + P P PP+ A+PR S +EI+ Sbjct: 654 RLDAVMKGSGLAFDQDAAQ-WLEWHALLDRPDRWKRPEIPAPAPPVSARPRRLSVTEIET 712 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + DPYA+YA+ +L+L + DP + G++ H + +K + + + Sbjct: 713 WMRDPYAIYAKHVLRLKALKPIDADPGAAEYGSMVHEALELFLKAWPAHLPSDPQGELLR 772 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIG 895 I FE + P + W F ++ E + ++ ++ + I + Sbjct: 773 IGREVFEAKVTSPALWAFWWPRFESVARWVAAKEMGRRHAVRRVHAEAGGALEIEAPAGP 832 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 LT ADRID + G + + DYKTG PK PQL LEA + G F + Sbjct: 833 FTLTAKADRIDEGQDGTLALIDYKTGTPPKAREVAAGFAPQLPLEAVIARHGGFGGVKAA 892 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 V+ L Y LK + A L+ ++L+ L +V++ + P+ + Sbjct: 893 PVSELLYWHLKGGADGG--FEREAGGDATTLAAEALEGLHALVSVFDDPATPYAARPHP- 949 Query: 1016 EKSNIQSEYDHLARVAEWREEYD 1038 E + S+Y HLARV EW D Sbjct: 950 EHAPKYSDYLHLARVREWASGGD 972 >gi|83950793|ref|ZP_00959526.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM] gi|83838692|gb|EAP77988.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM] Length = 985 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 262/1045 (25%), Positives = 423/1045 (40%), Gaps = 82/1045 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P +F + P + E++ L R + P +A VT+ V T++ + LR Sbjct: 4 PQDSPRLFGLPPGVDYSAELLAGL-------RTRLETQPPEAMARVTLIVNTRKMAKRLR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 ILP I +L + + L + ++R LELARLI + Sbjct: 57 QL---CDSGPDMILPRICTLASL------ESVWPLPGLPDAMPPLRRKLELARLISALID 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + PD+ + LA +LA ++D + E + + AL W Sbjct: 108 RAPDLAPR-------------SALFDLADSLAGLMDEMHGEGVDMDAIDALDIADQSGHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL I ++ + +R A ++ A +GP+I+AGSTGS Sbjct: 155 ARLKSFLAI-TRDFDDRDDCPGA--EARNRLVTEALLARWQAAPPQGPVILAGSTGSRGT 211 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T LM VA P GA+VLPG D + + WN + ++ HPQY LLD Sbjct: 212 TQMLMQAVAALPQGAVVLPGFDYDMSDSAWNALEDRLGG--------EDHPQYRFRALLD 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + + R + R+ V+S + P +D ++ + I + V L Sbjct: 264 QLGLAPTALPRWTETAPACPPRNAVLSMALRPAPVTDQWRSE--GPLLTGIPEAMQGVTL 321 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + R EA++IA+ LR + + +ALIT DR+L R+V L R+ I D SAG PL Sbjct: 322 LEAPSRRTEALAIAMRLREAAE-AGTPAALITPDRDLTRQVTAALDRWRILPDDSAGTPL 380 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 T L + + + + TL+KHPL G R LEL R Sbjct: 381 HRTAQGRFLRHVAALMTERLSTELLLTLLKHPLTHAGADRGAHLRLARELELHLRRKGLP 440 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + E D + L Sbjct: 441 FPDHEAITTWCA---------------------AKPEERQSWCDWLGDTF--LAGDLPGS 477 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIKA 600 + + + D + G ++ ++ G A Sbjct: 478 HPLPALAAHHSALARRIAWGSTPGADWPPSWSDPLLTPAGPQSLAVLDELALHGPHGGPA 537 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +A+++ +++ L+ V+ + I GT+E+R+ + +IL GLNEG WP+ Sbjct: 538 SAVDFGNLLQNLLSSGEVRSAERADPLIRIWGTIEARVQGAELIILAGLNEGSWPETPGH 597 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P+L+R ++ L E+ IG AAHDF+ A + TR++R + T+ SRWL RL Sbjct: 598 DPWLNRALRKQAGLLLPERRIGLAAHDFQQAALGPEIWITRAVRNDEAETVVSRWLNRLQ 657 Query: 721 VL-------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L GG D ++ RG+ +LD +L+ T RP P PP A+P S + Sbjct: 658 NLLSGLPDQGGVAALDGMRARGKAWLDRVDQLEAVTPTAPEPRPAPCPPRAARPSRLSVT 717 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 IK+LI DPYA+YAR +L L + ++ PD RG H+++ I + + ++ Sbjct: 718 AIKRLIRDPYAIYARHVLGLSALNPVQRVPDALMRGNALHDVLERFITETRDDDSGVTVA 777 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + +I D + + WR +++ F+ E ++ + I + + + Sbjct: 778 RLMRIADEELAAQVPWAQTRMQWRARLERVADGFVADELARRTVARPAALEIATRGTLPA 837 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 +G LT ADR+D+ G V I DYKTG P + Q+ D QL LEAA + + Sbjct: 838 LGFTLTAKADRLDVTPDGKVMIYDYKTGTPPSAKE-QEFFDRQLLLEAALTENFGWENFG 896 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 V YI L K + D + L E++ ++ F+S Sbjct: 897 AAPVLRAAYIGLGAKAGELDAPLE------DLSPADTWAQLAELIGAYMQPDKGFVSRRA 950 Query: 1014 LSEKSNIQSEYDHLARVAEWREEYD 1038 L + ++ +YD LAR EW D Sbjct: 951 LQKAEDV-GDYDQLARYGEWTLADD 974 >gi|84501213|ref|ZP_00999418.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597] gi|84390504|gb|EAQ02992.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597] Length = 976 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 276/1043 (26%), Positives = 442/1043 (42%), Gaps = 87/1043 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + KP +F + P + F R ++ LL R D L P L VT+ V T+R + +R Sbjct: 4 PSDKPRLFGLPPGADFPRHLVEGLLE-------RTDGLPPEALGRVTLIVNTRRMARRIR 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + F + +LP I+ + D+ D + ++ PPVS ++R LEL L+ + Sbjct: 57 TLF---DAGPARLLPRIRLVTDL------GDNMELAHIAPPVSPLRRRLELVPLVRALID 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + PD+ A LA +LA + + + E +E + AL + W Sbjct: 108 REPDLAPR-------------AALYDLADSLAGVFEEMRGEAVSFEAIRALDVSAHSDHW 154 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIP 240 A FL I + E P + + + P+I+AGSTGS Sbjct: 155 ARALKFLTIV----EQVEDEGALPDPAARMRLVADHLTDLWRAAPPQDPVIVAGSTGSRG 210 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 AT LM VA P GA+VLPG D +P A+W+ N + T HPQ+ +L+ Sbjct: 211 ATNVLMQAVARLPQGAVVLPGFDFDLPPAVWD-------NNLDDSLTGEDHPQFRYRRLM 263 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 LD + DV+ S + R+ ++S + P +D + + + + V Sbjct: 264 RSLDRRPGDVRLW-RESEQNDDRNRLVSLALRPAPVTDQWLAE--GPTLTGLDRAMETVT 320 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA + R+EA +IA+ LR + ++ + SALIT DR L+R+V L R+ I D SAG P Sbjct: 321 LIEAPSGRDEAQAIALRLRKAAED-GQNSALITPDRLLSRQVTAALGRWDILPDDSAGEP 379 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T L + + + L+KHPL G R LE R Sbjct: 380 LHLTPPGRFLRQVAELSHATHGAAGLLALLKHPLCHTGSDRGPHLRLTRGLETELRRNGP 439 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D ++ + + + W ++++ A + + I LV Sbjct: 440 PFPDGDTIRRFAAKQDSEIADA-----WAEWVADQAFGPAQDALPRLSDRIAALVARAEA 494 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIK 599 + CG LW G+ + + ++ + + Sbjct: 495 LSRGCGA----------------------GGAGTLWAGNAGQDVRAKLDELAGAADAAGE 532 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ +++T ++ G + + I GT ++R+ D +ILGGLNEG WP+ A Sbjct: 533 IGAEDFTNLLTSILRGAEERDSKTPHPHILIWGTRDARVQGADLVILGGLNEGTWPEVPA 592 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R M++++ L E+ IG +AHDF+ A G + TR+LR T+ASRWL RL Sbjct: 593 PDPWLNRAMRAEVGLLLPERRIGLSAHDFQQAIGAPEVWLTRALRGPEAETVASRWLNRL 652 Query: 720 LVL------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L GG + + RG +L +L+ RP P PP+EA+PR S + Sbjct: 653 TNLLNGLGPGGRSALEGARARGAHWLGMASQLEQVDPVDPAPRPAPAPPVEARPRRLSVT 712 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 +IK LI DPYA+YAR +L+L + K+PD RGT+ H ++ ++ Sbjct: 713 QIKTLIRDPYAIYAREVLRLRPLDPLMKEPDALQRGTVLHEVMEHFVRAATADPERLSAD 772 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + ++W +I+ + + E + +P + + Sbjct: 773 ELLALTRRVLADNVPWAEARLLWLARMTRIAEAVVTGEAGRLAQGRPARFEVPGRATLPG 832 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 G LT ADRIDL +G I DYKTG Q D QL LEAA + G F I Sbjct: 833 PGFDLTAKADRIDLDPAGNALIYDYKTGQMSSARQ-QMSFDLQLLLEAAMAERGGFEGIR 891 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 R V ++ L + D +++ ++ + QPF + R Sbjct: 892 PRHVLRAAFVGLGSNTDEVDAPLE------DLPADQVWARFTTLIERYLDAGQPFTAR-R 944 Query: 1014 LSEKSNIQSEYDHLARVAEWREE 1036 K+++ +YDHLAR EW Sbjct: 945 AMFKADMPGDYDHLARFGEWDVS 967 >gi|188584139|ref|YP_001927584.1| double-strand break repair protein AddB [Methylobacterium populi BJ001] gi|179347637|gb|ACB83049.1| double-strand break repair protein AddB [Methylobacterium populi BJ001] Length = 1045 Score = 524 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 297/1055 (28%), Positives = 468/1055 (44%), Gaps = 34/1055 (3%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VFTI P +PF + AL++G LV +P LASVT+Y+PT+RA++ L Sbjct: 3 ATAAPRVFTIPPGAPFLPTLADALVSGRLV---GAVGHDPFALASVTLYLPTQRAVRALS 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLI 116 + + G + +LP + LG+ E + + P + ++R L LARL+ Sbjct: 60 TVLAQRLGG-AALLPRMIPLGEADEAELDLSASTLLDTPEDLLHPSIPALERRLILARLV 118 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 W + + + E P +P SPA+A+ LA +L ++D + E W ++ + + Sbjct: 119 QKWAETVDRELLPIDDEVPFLVPSSPADAVALAADLEGLMDALTVEGLPWSEIASAVEAE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGS 235 + ++ L DFL+IA+++W E L + + P L+ AEA+ L + P+I+AGS Sbjct: 179 HSRYFRLTLDFLRIAAEHWPEILAARSLADPTARARRLVLAEADRLTRDRPDDPMIVAGS 238 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 TGS+PATARL++ VA P GA+VLPGLD H+ W I HPQ Sbjct: 239 TGSVPATARLIAAVARLPRGAVVLPGLDLHLDEEGWEAIDGAGGTRDE---IAHGHPQAI 295 Query: 296 LAKL--LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L L L + R +V+ LG +S E R ++S++ P +T+D ++ Sbjct: 296 LRALTGRTGLAVARGEVETLGTLSPEAVARERLLSQALRPAETTDAWARLDGAERLALAH 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + +A++EA +EREEA+ A+ALR +L+ +AL+T DR LA RV EL R+GI Sbjct: 356 EGMEGLAVVEAADEREEALVAALALRETLETPGATAALVTPDRGLALRVSAELARWGIAA 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + SAG+ L+ + + + + L+ HP + G + RA ALE+ Sbjct: 416 EDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTRSEVVRAAAALEI 474 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LRG + + VP + RL D +L+ ++D + + Sbjct: 475 GGLRGPAPIPK-NSFDGMRAAVALQRNATERVPRAKKRLKAIDWDLSENILDRLEIALDR 533 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 T ++ L + + + + + E Sbjct: 534 FRTDLQPAIG-----NLVALAALHREACERMMGGAETEEEIDDPSLDTLDGLFDDLESAE 588 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEG 652 + ++ T L TV L ILG LE+RLL+ D ++LGGL+E Sbjct: 589 QE-ALPGRFSDYAAFFTALARDRTVACAQGNAHPRLRILGPLEARLLSVDRIVLGGLDEA 647 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP + FL+R M+ + L E+ IGQAAHDF G + TR+ + PT+ Sbjct: 648 VWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAHDFVQGLGIHDAVVTRAAKREGSPTVP 707 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTY 770 SR+LQRL GG + RGQ LD + P RP P P P Sbjct: 708 SRFLQRLRAFGGDAVWAGAIARGQRLRGLAAILDRGREAPPPRLTRPAPKPDPALFPSRL 767 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S +EI+ L+ DPY+++AR IL L+ + P +RG+L H I+ + + + Sbjct: 768 SVTEIETLVRDPYSIFARHILGLEALEPMAVVPGAAERGSLIHKILGDFSQAHPGPLPAD 827 Query: 831 INHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 L+ I F + P + W + +++ +FLE E + + I K+ Sbjct: 828 AETLLYAIALDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLRAIHAERSGKL 887 Query: 890 AIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I L+ ADRI++ G I D+KTG P T PQL+LEAA L G Sbjct: 888 TIPLGERTFTLSARADRIEVRADGGYCIVDFKTGTPPSNRTVFAGFSPQLTLEAAMLMHG 947 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDK----KKYSADELSEKSLKNLIEIVTLLQN 1003 +F + +L Y+ + K + + E+ L+ L ++ Sbjct: 948 AFEGLKAASAPDLLYVHASGGREPFRPIPVKAPPGDARAVAAIVEEHLERLRGLIARYMT 1007 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 GE + S + +EYDHLARV EW + Sbjct: 1008 GEAAYPSRP-YPQYVRAYNEYDHLARVLEWSLAGE 1041 >gi|332559992|ref|ZP_08414314.1| putative helicase/exonuclease [Rhodobacter sphaeroides WS8N] gi|332277704|gb|EGJ23019.1| putative helicase/exonuclease [Rhodobacter sphaeroides WS8N] Length = 999 Score = 524 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 267/1045 (25%), Positives = 430/1045 (41%), Gaps = 94/1045 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P +F + P F ++ L R P +A V +YV T+R + + Sbjct: 4 TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRVTE 56 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + + LP I+ + ++ L PV ++R LELA+L+ Sbjct: 57 LMT---AEGTGFLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PDI + L+ +LA++ID ++ E E + L + W Sbjct: 105 QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 F+ I + + + + ++A+ R A P+I+AGSTGS T Sbjct: 152 RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + M VA P GA+VLPG D +P A+W + + T HPQ+ +L+ Sbjct: 208 SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + +V R + R+ +IS S P +D T+ + + + + LI Sbjct: 260 VGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE--GGHLTGLVETARGMTLI 317 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA R EA+++A+ LR + +E +++ALIT+DR L R+V L R+GI D SAG PL+ Sbjct: 318 EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + L + + + TL+KHPL G R LEL R Sbjct: 377 LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 DL R A + + I L Sbjct: 437 PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601 + LW +E G+ + ++ E + Sbjct: 477 AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++ D+ ++ V+ ++ L I GTLE+R+ D +ILGGLN+G WP+ + Sbjct: 530 PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 P+L+R M+ L E+ IG +AHD+ A ++ TR+ R+ T+ SRWL RL+ Sbjct: 590 PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649 Query: 722 L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773 L GG + ++ RG+ +LD L+ P RP P PP+ ++P + + Sbjct: 650 LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPSRPERLAVT 709 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832 I+ LI DPYAVYAR IL+L + + PD RG++ H I+ +K R + P Sbjct: 710 GIRTLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAER 769 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + +I ++ +E P +W + + FLE E + + ++ + Sbjct: 770 ARLMRIAEAVLAEEVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLT 827 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + LT DRID+L G + I DYKTG P K+ ++ D QL LEAA + G F + Sbjct: 828 PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA + YI L K++ + D L + + L +V EQ ++S Sbjct: 887 GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALVGRYLRREQGYVSR- 939 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R +YDHLAR EW Sbjct: 940 RAMFGERFPGDYDHLARFGEWEMSD 964 >gi|170751474|ref|YP_001757734.1| double-strand break repair protein AddB [Methylobacterium radiotolerans JCM 2831] gi|170657996|gb|ACB27051.1| double-strand break repair protein AddB [Methylobacterium radiotolerans JCM 2831] Length = 1054 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 311/1065 (29%), Positives = 485/1065 (45%), Gaps = 42/1065 (3%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M ++ VFTI+ PF + ALL+G LV +PL LA+VTIY+PT+RA + L Sbjct: 1 MPARQ-AVFTISRGVPFLPTLAEALLSGRLVGPVAG---DPLALAAVTIYLPTRRAARAL 56 Query: 61 RSEFIEITG----KKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLE 111 + E G ++T+LP + LG+ E + L+ P+ ++R L Sbjct: 57 GAILAERLGRDAPGQATLLPRMIPLGEADEAELDLAAEPLLEENADPLSIPMPPLERRLI 116 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 LARL+ W + + L E P +P SPA+A+ LA +L ++D + E W ++ A Sbjct: 117 LARLVQAWAKTVDRTLLPLDAEVPFLVPSSPADAVGLAGDLERLMDALTVEGLPWSEIGA 176 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPI 230 +Y ++ L DF+KIA++ W + L E + PV L+ AE L + T+ P+ Sbjct: 177 AVEAEYSRYFGLTLDFVKIAAENWPKLLAERGLADPVARARGLVLAEERRLSRSATQDPV 236 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 I+AGS GS+PATARL++ VA P+GA+VLPGLD + A W+ I T S Sbjct: 237 IVAGSLGSVPATARLIAAVAKLPHGAVVLPGLDLDLDAAGWDGID---TGEGFSRVIAHG 293 Query: 291 HPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 HPQ L +LL + L+I R +V LG R+ ++S++ P DT+D + Sbjct: 294 HPQAVLHRLLGPENLNIGRAEVVALGEPDAGQAARAALLSQALRPADTTDAWAALDPAER 353 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408 + +AL EA +EREEA+ A+ALR +L +ALIT DR LA RV +EL R Sbjct: 354 DTVARLGLDGLALAEAADEREEALVAALALRETLQTPGATAALITPDRGLAGRVAVELLR 413 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAI------FKLNDFMAIATLVKHPLAKFGFPEK 462 +GI + SAG+ L+ + + + L+ HP+ G P Sbjct: 414 WGIVAEDSAGLSLAGSAAGRLARLAAELAADLARDQADAIPARLIALLSHPMVHLGLPRP 473 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + R ALE+ LRG + L+ + H P + RL + D ELA Sbjct: 474 DVVRGAAALEIGLLRGPVPAPGFDGLRKALA--AERAGPPEHRPRAKRRLKDVDWELAAD 531 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L+D + G+ + + P Sbjct: 532 LLDRLDLVFRDF-----PGPDGAGDCDLVTTATGHREACDRLIAGPEDASPAETDGSLSC 586 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI-EKSSTLFILGTLESRLLNF 641 + + + ++ T L V L ILG LE+RLL+ Sbjct: 587 LDALFDDLEMAEPGLMPGRFDDYATFFTSLARERKVACSGEAPHPRLRILGLLEARLLSV 646 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 D ++LGGL+EGVWP T + FL+R M+ + L E+ IGQ AHDF A G R + TR Sbjct: 647 DRVVLGGLDEGVWPVRTLTDSFLNRPMRERVGLNPPERRIGQMAHDFVQALGCRDAVITR 706 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 +L+ PT+ SR +QRL L G +D++ + G+ +LD +P KRP P P Sbjct: 707 ALKREGAPTVPSRLIQRLRALSGDARWDDVLRAGRRITGLAARLDAAPPEPRLKRPAPKP 766 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 PR+ S +EI+ L+ DPY+++AR +L LD + P RG+L H++ E Sbjct: 767 DPALFPRSLSVTEIETLVRDPYSIFARHVLGLDPLDPLAAAPGVATRGSLVHDVFAEFAA 826 Query: 822 KRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + P+ + + + F + E P++ W + +++ ++L+ E + + + + Sbjct: 827 RHPADLPPDAAERLLNLAVNAFGEIEAEYPNLYAEWWPRYERMASAYLDWEAQRRPGLTR 886 Query: 881 IFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 ++ + + I L ADRI+L G I DYKTG P + PQL+ Sbjct: 887 VYPEVSGRWVIPMGRETFTLRARADRIELRPDGTACIVDYKTGTPPSAKMIFTGFSPQLT 946 Query: 939 LEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKI----DCITNDKKKYSADELSEKSLKN 993 LEAA L G+F+ + K +L Y+ K ++ + + + Sbjct: 947 LEAAMLMHGAFADLPAAKTTPDLLYVHASGGRKPFVPIPVKPPRGEERGVEAIVAEHAAR 1006 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L +V GE + + + ++ YDHLARV EW D Sbjct: 1007 LKGLVARFMTGEAAYTARP-YPQYASKYGAYDHLARVLEWSLAGD 1050 >gi|126460954|ref|YP_001042068.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029] gi|126102618|gb|ABN75296.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029] Length = 997 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 267/1045 (25%), Positives = 430/1045 (41%), Gaps = 94/1045 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P +F + P F ++ L R P +A V +YV T+R + + Sbjct: 4 TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRITE 56 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + + LP I+ + ++ L PV ++R LELA+L+ Sbjct: 57 LMT---AEGTGFLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PDI + L+ +LA++ID ++ E E + L + W Sbjct: 105 QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 F+ I + + + + ++A+ R A P+I+AGSTGS T Sbjct: 152 RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + M VA P GA+VLPG D +P A+W + + T HPQ+ +L+ Sbjct: 208 SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + +V R + R+ +IS S P +D T+ + + + + LI Sbjct: 260 VGAGPAEVGRWTDEIPPSPDRNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLI 317 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA R EA+++A+ LR + +E +++ALIT+DR L R+V L R+GI D SAG PL+ Sbjct: 318 EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + L + + + TL+KHPL G R LEL R Sbjct: 377 LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 DL R A + + I L Sbjct: 437 PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601 + LW +E G+ + ++ E + Sbjct: 477 AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++ D+ ++ V+ ++ L I GTLE+R+ D +ILGGLN+G WP+ + Sbjct: 530 PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 P+L+R M+ L E+ IG +AHD+ A ++ TR+ R+ T+ SRWL RL+ Sbjct: 590 PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649 Query: 722 L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773 L GG + ++ RG+ +LD L+ P RP P PP+ A+P + + Sbjct: 650 LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVT 709 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832 I+ LI DPYAVYAR IL+L + + PD RG++ H I+ +K R + P Sbjct: 710 GIRTLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAER 769 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + +I ++ +E P +W + + FLE E + + ++ + Sbjct: 770 ARLMRIAEAVLAEEVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLT 827 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + LT DRID+L G + I DYKTG P K+ ++ D QL LEAA + G F + Sbjct: 828 PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA + YI L K++ + D L + + L ++ EQ ++S Sbjct: 887 GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALIGRYMRREQGYVSR- 939 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R +YDHLAR EW Sbjct: 940 RAMFGERFPGDYDHLARFGEWEMSD 964 >gi|89056556|ref|YP_512007.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1] gi|88866105|gb|ABD56982.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1] Length = 986 Score = 522 bits (1345), Expect = e-145, Method: Composition-based stats. Identities = 274/1046 (26%), Positives = 454/1046 (43%), Gaps = 86/1046 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + VF F +I L + P LA V I+V R + L++ Sbjct: 5 STTARVFATPLGVDFCAALIDGL-------DRALSGQGPEALARVEIHVANARMQRRLQT 57 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +I +LP I+ + ++ L P +S + LELA+LI + Sbjct: 58 LYIRR---GPGLLPRIRPV------LSLSETADLEGLPPAMSPLALRLELAQLIGKLIDA 108 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PD+ A LA +LAD + + E + + +L ++ W Sbjct: 109 NPDLAPR-------------AALYDLADSLADFMGEMVEEGVTPDTIASLDMGEHSEHWT 155 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-AEHLMKGTKGPIIIAGSTGSIPA 241 A DFL IA + + + +P G Q A++ A+ + P+I+AGSTGS A Sbjct: 156 RARDFLGIAQQV----IATGDRPTPEGRQAAVVDRLIAQWRINPPTHPVIVAGSTGSRRA 211 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T RLM VA+ P GA++LPG+D +P AIW + + S HPQY LAKLLD Sbjct: 212 TFRLMEAVAHLPQGAVILPGIDRDMPGAIWRGL----LDGRRSGLAGEDHPQYRLAKLLD 267 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + V G + + R+ V+S + P ++ T+ K+ ++ + V L Sbjct: 268 AVGMDPATVPLWGRATPAVPARNAVVSLALRPAPVTNQWRTE--GPKLTDVSGAMAGVTL 325 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +EA + + EA +IA+ +R + + ++ AL+T DR LAR+V +L R+ I D SAG L Sbjct: 326 LEAPSPQMEATAIALRMRKGVAD-GQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVL 384 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + T L + + A+ L+K+PL G R LEL LR Sbjct: 385 AQTAPGRFLRQVAEMLCGPVTAEAMVALLKNPLCNSGPDRGNHLRRTVDLELQLLRKGLT 444 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++ ++D A +K++ W + L++ E Sbjct: 445 FPT----RAALMDWAAARKDDVDTTAWVTWLADHLLEPVE-------------------- 480 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKL-PNLWFEEEGKTLSSLFSKI-IETGSCIK 599 L +++ L + + + L+ +E G+ +L ++ + Sbjct: 481 ---TAALPLAERVALHKSRADALAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGA 537 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +A ++ D T L V+ + + + I GT E+R+ D IL GLNEG WP+ + Sbjct: 538 MSARDYADFFTALAHDREVRFALRPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAAS 597 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+L+R +++D L+ ++ IG +AHDF+ + +R+ R++ T+ +RWL RL Sbjct: 598 ADPWLNRPLRADAGLRLPDRVIGLSAHDFQQGIAGGEVWLSRAKRDDETDTVPARWLNRL 657 Query: 720 LVLGGTD------FFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQPRTYSF 772 + L G +++ RG +L L + RP P P + S Sbjct: 658 VNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALSV 717 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 ++I++LI DPYA+YA R+L L + + PD RGT+FH I+ + I + Sbjct: 718 TDIERLIRDPYAIYAARMLNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPEDAG 777 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + ++ P +WRH I +L E ++ E + + Sbjct: 778 QVFMGLAGDILAQDAPWPAARHLWRHRLQTILPWYLAQEASFRALAEPWVLEERKDWHVP 837 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G+ L+G ADRID L G V I DYKTG+ P + + QL L A + G+F+ Sbjct: 838 GLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDR-MEIAYNKQLLLLALMGRGGAFAD- 895 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 VA L Y+ L K +I D D L +++ K L E++T + F S Sbjct: 896 RPLDVARLAYVGLGTKPEIRAQDFD------DGLLDETFKGLRELITHYRQPLVGFPSRR 949 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYD 1038 +++ +YDHLAR+ EW E D Sbjct: 950 SP-KQTTYAGDYDHLARLGEWDETMD 974 >gi|77462065|ref|YP_351569.1| putative helicase/exonuclease [Rhodobacter sphaeroides 2.4.1] gi|77386483|gb|ABA77668.1| putative Helicase/Exonuclease [Rhodobacter sphaeroides 2.4.1] Length = 997 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 268/1045 (25%), Positives = 429/1045 (41%), Gaps = 94/1045 (8%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P +F + P F ++ L R P +A V +YV T+R + + Sbjct: 4 TPGPRLFGLPPGVDFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRVTD 56 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 LP I+ + ++ L PV ++R LELA+L+ Sbjct: 57 LMTAEGAG---FLPRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEA 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 PDI + L+ +LA++ID ++ E E + L + W Sbjct: 105 QPDIAPR-------------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQ 151 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 F+ I + + + + ++A+ R A P+I+AGSTGS T Sbjct: 152 RTQAFMAIVAPMFGADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTT 207 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + M VA P GA+VLPG D +P A+W + + T HPQ+ +L+ Sbjct: 208 SLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGL 259 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + +V R + R+ +IS S P +D T+ + + + + LI Sbjct: 260 VGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLI 317 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA R EA+++A+ LR + +E +++ALIT+DR L R+V L R+GI D SAG PL+ Sbjct: 318 EAPGPRAEALAVAMILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLA 376 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + L + + + TL+KHPL G R LEL R Sbjct: 377 LSAPGRFLRHVARLFGRRLTGETLLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPF 436 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 DL R A + + I L Sbjct: 437 PAAADLALWAGTRPA--------------------DGVADWARWLGGLIEGLDAAGPRPL 476 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKAN 601 + LW +E G+ + ++ E + Sbjct: 477 AD-------HVAAHLALAEALATGPAGDTTGELWLKEAGEAARAAVEELRREAPHGGELT 529 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++ D+ ++ V+ ++ L I GTLE+R+ D +ILGGLN+G WP+ + Sbjct: 530 PADYTDLFDAILARGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPD 589 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 P+L+R M+ L E+ IG +AHD+ A ++ TR+ R+ T+ SRWL RL+ Sbjct: 590 PWLNRQMRLKAGLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMN 649 Query: 722 L-------GGTDFFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFS 773 L GG + ++ RG+ +LD L+ P RP P PP+ A+P + + Sbjct: 650 LMSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPDRLAVT 709 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEIN 832 I++LI DPYAVYAR IL+L + + PD RG++ H I+ +K R + P Sbjct: 710 GIRKLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGSDRPTER 769 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + +I ++ +E P +W + + FLE E + + ++ + Sbjct: 770 ARLMRIAEAVLAEEVPWPAARALWLARLDRAAAFFLETEAAHA--GTPVVLEEEGRVDLT 827 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + LT DRID+L G + I DYKTG P K+ ++ D QL LEAA + G F + Sbjct: 828 PLRFTLTAKPDRIDVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGL 886 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +VA + YI L K++ + D L + + L +V EQ ++S Sbjct: 887 GPAEVARISYIGLGTSPKVESVETDAA------LLGQVWEGLHALVGRYMRREQGYVSR- 939 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R +YDHLAR EW Sbjct: 940 RAMFGERFPGDYDHLARFGEWEMSD 964 >gi|254294693|ref|YP_003060716.1| hypothetical protein Hbal_2339 [Hirschia baltica ATCC 49814] gi|254043224|gb|ACT60019.1| conserved hypothetical protein [Hirschia baltica ATCC 49814] Length = 1026 Score = 519 bits (1336), Expect = e-144, Method: Composition-based stats. Identities = 272/1057 (25%), Positives = 439/1057 (41%), Gaps = 80/1057 (7%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P +FTI P++ F + L + NP L I+ P KR+ + + F Sbjct: 17 PRIFTIPPATSFLNALANTLSENLGL------KDNPAALTQTVIFCPNKRSSRAIAEAFH 70 Query: 66 EIT---GKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRN 121 +I G K+ + P I+ LGD+ ++ A + + L P +S+ QR LA+L+ W Sbjct: 71 KIAMGFGHKALLAPEIRVLGDLEDDHTIAPIGVSELELGPALSSGQRRGTLAKLVQFWST 130 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI-IETEEKKWEDLHALKNE-KYGM 179 K P+ P +AI A L ++D E W L L + Sbjct: 131 K------------AYGAPLPPRSAIAAADQLGSLLDQSAMGEGTDWSKLQGLVEDSDLAA 178 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGS 238 W +ADFL+I S+ W L E A+ P+ ++A R A + + PIIIAGSTG+ Sbjct: 179 HWKQSADFLEIISQAWPAHLEEQGATDPMARRVAAARTLANNWAARPPQHPIIIAGSTGA 238 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 PAT LM N P GAI+LPGLD I W I + +HPQY+L + Sbjct: 239 TPATRLLMQAAMNLPQGAIILPGLDPDISEDAWKAI-----------ASSPSHPQYTLRR 287 Query: 299 LLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354 L L + + V + + + R +I+++ P T+ + N + Sbjct: 288 ALGKLGVDKSSVLKWPGAIETPDNTARRKLINEALAPASTTKSWTKRLEFLAGENTPEHL 347 Query: 355 ---CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 ++LIEA++E EEA++ A+ LR +L+ K +AL++ D +L RRV +TR+G+ Sbjct: 348 VNSGLKGLSLIEAEDEAEEALACALLLREALETPGKTAALVSPDGSLVRRVSALMTRWGV 407 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 +I S+G P T H S+ + + D + + +L+KHPL + G+ E A L Sbjct: 408 DIPPSSGTPFMQTHHGSLFALMFQWLRDEGDPVQLLSLLKHPLVRVGWDEDNYHSALVEL 467 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 E + V + + + +L L QC Sbjct: 468 ESHKNEFRE--------DGTVRGPRRYDTLDALADRLGMQKRAQSAQLIRDLATAARQCE 519 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 T + + + + + V+ LW EG + + Sbjct: 520 IRPSTMAQDIDGNVFARACARLAERLVSTENEAGS------TRLWRGVEGAQTARYLETL 573 Query: 592 IETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 E + + W + + + PK + L I G LE+R D +IL LN Sbjct: 574 AEIAAELGPVPPDLWTEFAEAIASESAIPPKGGEHPRLAIWGPLEARQQMRDVIILASLN 633 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 E WP A + FL + ++ DL L E+ +G +AHDF + RS R ++ P+ Sbjct: 634 ENSWPAAAAADSFLPKRLRKDLGLPDPEERLGLSAHDFAQLACAPDVKLVRSKRVDDKPS 693 Query: 711 IASRWLQRLLVLGGTDFFDNL-------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 +ASRWL RL L + L W R + + P P PP+ Sbjct: 694 VASRWLWRLNTLAAGGLGSPEAVQKALEPEPKNNPLIWARSMRKARDYTPIQAPTPRPPV 753 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 +A+P +S S + +LI DPYAVYA +LKL+ +P + +RGT H + + Sbjct: 754 DARPTKFSVSRVARLIRDPYAVYASDVLKLNPMPAVGAESGPAERGTAIHAAVERYELEG 813 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + ++ +K + R L+ + + +++ + +++I + + Sbjct: 814 ---------GQVIDLVTKELKKAGETDTAIELNRPLWSRAADAYIAWRNERETNIREKHL 864 Query: 884 NIPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 I ++ E LT ADRIDLLK I D+KTG K+ Q ++PQL LEA Sbjct: 865 EIEGELTFEISGRKYRLTAKADRIDLLKDNTFAIIDFKTGTPKTKKQLQSGLEPQLPLEA 924 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK---SLKNLIEIV 998 A G F ++ + L Y+ L N K + + + + I++V Sbjct: 925 AIAAGGGFPKLPTADTSQLIYVSLAPGAASTKADNGKPVKLDEGPMAEAQKAREGFIKLV 984 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 Q + S R ++ S+YD LAR EW Sbjct: 985 QSYATISQAYYSKPRAEFSWDV-SDYDRLARRDEWSS 1020 >gi|217977593|ref|YP_002361740.1| double-strand break repair protein AddB [Methylocella silvestris BL2] gi|217502969|gb|ACK50378.1| double-strand break repair protein AddB [Methylocella silvestris BL2] Length = 1043 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 290/1056 (27%), Positives = 480/1056 (45%), Gaps = 41/1056 (3%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 K NVFTIAP +PF + A L+G +VE F NPL LA TIYVPT+RA + L EF Sbjct: 3 KKNVFTIAPGAPFLKTFAEAFLDGRVVEGF-CAGENPLELAEATIYVPTRRAARALTDEF 61 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTA--------DLLLSYNLNPPVSNIQRLLELARLI 116 K+ +LP I LG + E + + + I R ++LA L Sbjct: 62 FRALPTKAVLLPRILPLGALDESETELLFEDGGADEFSAPLEPPLAIGEIDRRMQLAELC 121 Query: 117 LIWRNKL--------PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 L W L D + L L + + A+A L+ +LA +ID + E+ W Sbjct: 122 LSWSRLLRHAIVRVEADGARVLDERESLLVGATAADAWGLSGDLARLIDELIIEDIDWAR 181 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-AEHLMKGTK 227 L L +E + +W + DFLKIA W L + Q++L+ + Sbjct: 182 LDPLASEGFDDYWRITLDFLKIAITQWPHILEQRGLVDRARRQVSLIERQSLALRDAPGL 241 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 GP++ GSTGS ATARL+ +A+ P GAIVLPGLD + Sbjct: 242 GPVVAIGSTGSNRATARLLDAIASAPRGAIVLPGLDLKLDE----AAFALVARAADEGEP 297 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 THPQ +L +LL L++ R++V+ LG ++ R IS++ P + +D Sbjct: 298 AFTHPQAALCRLLRTLNMSRDEVRPLGALTKAQDARERFISEALRPAEATDAWIAYRQAI 357 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT 407 +++ + V LIEA +EREEA+++AIA+R +L+ +AL+T DR LARRV EL Sbjct: 358 DPALLEEALAGVTLIEAADEREEALALAIAMRHALERPDGTAALVTPDRELARRVAAELL 417 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 R+G+ ++ SAG PL + + + +A L+ H + GF + ++R Sbjct: 418 RWGVRVEDSAGEPLGSGEAGLLARLVAACAADDMSAATVAALMAHGALRLGFSREEIARL 477 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + LE+ LR ++ ++ A Q + H Q R+ + + + + Sbjct: 478 RPLLEIGVLRAAAGGKLRDPARA--IELAAAQADGPHAHPAQKRIFPRESDALRDFLMRL 535 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + P++ G ++ W + T L + E + + E L Sbjct: 536 EAALRPML-------EAGGERDLAFWVEAHRTALAAIRAGEPEEEDSGEDGEALAALFEE 588 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + S ++ +A + + + L ILG LE+RL++ D ++LG Sbjct: 589 LA--LSATSEMRFDAEAYQFFFAAVAGEARLGAAGRTHPRLKILGLLEARLMDVDVMLLG 646 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 GL+E VWP + FL+R M++ L L E+ +GQ AHDF A G ++ +R+ + Sbjct: 647 GLDESVWPPQARADAFLNRPMRAALGLSPPERKLGQTAHDFVQAMGRDKVVLSRAAKRGG 706 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQ 766 PT+ASR++QRL LGG + RG+ YLD R +D P +RP+P PP+ + Sbjct: 707 APTVASRFIQRLAALGGP-AWAACAARGKTYLDLARLIDRPAAAPAPLRRPEPKPPVALR 765 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-IN 825 P S ++I+ L DPYAVYA ILKL + + P + G+ H I Sbjct: 766 PNRLSVTKIETLRRDPYAVYAETILKLLPLDSIGRTPGPAETGSAIHAAIEAFTASFGPG 825 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 ++ ++ E P + ++ ++ E +S +++I Sbjct: 826 PLPAGARDTLRALLLKALEDNLADPGFAAFYVPRLKQMIDFYMGFEASRRSGLDEIRTEA 885 Query: 886 PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + LT ADRI+ SG + + D+KTG P + + PQL+LEAA Sbjct: 886 AGRLEFFLSDGSPFALTARADRIERAASGKLSLIDFKTGAPPGIKEIEVGFAPQLTLEAA 945 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 K G+F ++ + Y++L K + ++++++ +L+E+++ + Sbjct: 946 MAKRGAFGPAGQDEI-DALYVKLNGPGGGKVKPVVFKGRTVEDVADQHFAHLVELLSQFR 1004 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + ++ + + + + YDHLARV EW + Sbjct: 1005 DPDRSYPPRPFP-KFAKAYNAYDHLARVKEWSAGGE 1039 >gi|323138128|ref|ZP_08073201.1| double-strand break repair protein AddB [Methylocystis sp. ATCC 49242] gi|322396590|gb|EFX99118.1| double-strand break repair protein AddB [Methylocystis sp. ATCC 49242] Length = 1027 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 296/1048 (28%), Positives = 480/1048 (45%), Gaps = 45/1048 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 NVFTIAP +PF + A L G +V + PL +A TIYVPT+RA + L ++F Sbjct: 4 NVFTIAPGAPFLETFVEAFLAGEIVASV-SRASPPLAMARATIYVPTQRAGRALAAQFAR 62 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNK 122 + +T+LP I LG + E + A + + L P+ ++R L LA+L++ W Sbjct: 63 AYDRGATLLPRILPLGGLEESETAALFGGAEDFDDALPAPIEELERRLLLAQLVMQWSKA 122 Query: 123 LPDIIKDLYPES--------PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174 + I + P PL + SP+ A LA +L +ID E+ E + + + Sbjct: 123 IGRAILSIDPTGAPVLDETEPLLVASSPSGAYALAADLGALIDEFIIEDVAPEAIDRIVD 182 Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIA 233 + + +W + FL+IA W + L E Q L+ A+ L + G P+I Sbjct: 183 DSFDKYWSITTQFLRIALHQWPDILSERGRIDAASRQKILLEAQVAALAQQKHGGPVIAL 242 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 GSTG+ P TARL++ +A NGA++LPGLD + W + E S + +HPQ Sbjct: 243 GSTGAHPTTARLLAAIAALENGAVILPGLDREMSPDAWARVGE------SDDEPAFSHPQ 296 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L +LL+ + + REDV LG VS E+ GR +++++ LP + + + Sbjct: 297 TMLKRLLNVMGVHREDVCELGKVSPELSGRRALVAEAMLPAIETSAW-RLFRASHGASFV 355 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 DV+ IEA +ER EA+++A+ +R +L+ ++ +AL+T DRNLARRV EL RF I I Sbjct: 356 SALEDVSAIEAPDERMEALALALFMREALETPQRTAALVTPDRNLARRVAAELRRFDIEI 415 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D S G L++T + + + + +A L+ HPLA G + ++ +E+ Sbjct: 416 DDSGGASLASTSEGVLARLVAEIGAEGFSAVNVAALLAHPLALLGHAREKVAALAPLVEI 475 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 LR L + V P +E I + Sbjct: 476 GVLRELG--AGQHGLSASVAKAREFAGARHAHPAAHRISDDE--------WRDIEALLRQ 525 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L S G ++S W + + + ++ + L LF ++I Sbjct: 526 LEAAFATYVSLRGENALSTWAQAHRAAFEALTQGAS------EADDGAQALFGLFDRLIA 579 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + +A+ + + R+ T++ L ILG LE+RL+ D +++GGL+EGV Sbjct: 580 AEAPPGFDALSYASLFDRISFETTLRGPRRAHPRLKILGPLEARLIEADLVLIGGLDEGV 639 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP T FL+R M+ L+L E+ IGQ+AHDF MA G + ++ +R+++ PT+AS Sbjct: 640 WPPQTDTGAFLNRSMRRQLDLSPPERRIGQSAHDFVMALGAQSVVLSRAVKRGGSPTVAS 699 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 R+L RL L G D F K RG L LD+ RP P PP++ +P S + Sbjct: 700 RFLTRLEALAG-DAFAGCKARGDRMLAIAAALDHPRDYVTIARPAPRPPIDLRPTKLSVT 758 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-NKNTPEIN 832 +++L DPYA+YA +LKL + + +RGT H + E + + P+ Sbjct: 759 RVERLRRDPYAIYAEYVLKLVPLAPLGAEIGARERGTALHEALAEFVMRHPRGPLPPDAR 818 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + L P + L+ E++ +S +IF+ + Sbjct: 819 AQLHDMARRKLSDFFLDPAFATFTWPRIAQGLDHALDFEQERRSEGCEIFIETRGAWRLP 878 Query: 893 ---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 LT ADRI++ G + DYKTG P + PQL+LEAA ++AG+F Sbjct: 879 LEDGSTFTLTAVADRIEVDPHGRAYVFDYKTGAPPSVKQVGAGWAPQLTLEAAMVEAGAF 938 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + + V Y+ LK + + K ++ + ++++ + P+ Sbjct: 939 ADVGVHPVGGAAYVGLKDGGDTQWL--NWKDRGFADVVATHRVEVEKMLSQYRASATPYP 996 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEY 1037 S ++ S +YDHLARV EW Sbjct: 997 SRPFVAFVS-GVGDYDHLARVKEWSRGG 1023 >gi|298290317|ref|YP_003692256.1| double-strand break repair protein AddB [Starkeya novella DSM 506] gi|296926828|gb|ADH87637.1| double-strand break repair protein AddB [Starkeya novella DSM 506] Length = 1013 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 310/1039 (29%), Positives = 487/1039 (46%), Gaps = 30/1039 (2%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M PN+ TI S+PF + ALL+G LVE F +P LAS T+++PT+RA + L Sbjct: 1 MSRPDPNLLTIPASAPFLAVLADALLDGRLVEGFAPR-HDPFALASATVFLPTRRAGRLL 59 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 T+LP I LGDV E+ + V + R L LA L+ WR Sbjct: 60 AEALRARMESGVTLLPRIVPLGDVDEDSLAF-AESFTDPPRAVPGMTRRLALASLVRRWR 118 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 L + +++ P LA LA +ID + ++ WE L L ++ ++ Sbjct: 119 RLLAGD------DGRVAVAAGPGAEFALADALAHLIDEMAAQQVPWEKLDTLVPGQHDLY 172 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 W +A DFLKIA ++W L EL A + L+ AEAE L GP+I AGSTGS+P Sbjct: 173 WDMALDFLKIAREFWPALLDELGAVDASVRRDRLIAAEAERLRAAPAGPVIAAGSTGSMP 232 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ATARL++ VA+ +G +VLPGLD + W+ +T+ +HPQY LA LL Sbjct: 233 ATARLLAAVAHLTDGCVVLPGLDTDLDARSWDHLTD-------DEAPAPSHPQYGLALLL 285 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D R +GR ++S++ P +++ + I ++V+ Sbjct: 286 KAHMRVGRDAVR-SLAPPAPHGRERLLSEALRPVASTEAWASLAERLGAAEIDAALAEVS 344 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 +IEAD+ REEA++IA+ALR +L+E + +AL+T DR+LARRV EL RF + ID SAG P Sbjct: 345 VIEADDAREEALAIAVALREALEEPGRSAALVTPDRDLARRVAAELLRFEVAIDDSAGEP 404 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 LS + + +A + ++ L++HPLA+FG L +A +ALEL+ LRG + Sbjct: 405 LSESAPGRFARLVADACDAELAPVPLSALLRHPLARFGLERGALDQAADALELMVLRGPR 464 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L V H ++ + + + LA L + I + PL+ Sbjct: 465 PEAGADGLVRAV---AGFSPGLHHSSDPRAAIDTDRQALAAGLAERIARAFGPLLALGAG 521 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK- 599 ++ L ++ E LS F + E S Sbjct: 522 EHPFATLLEAHRAAVAAAWSAEDGGAAEDAI--------ALAELSKTFEAMAEGASEAPV 573 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ + L+ V+P + + L ILG LE+RL++ D ++L GL EG WP Sbjct: 574 MRLADYAAALPLLLADRPVRPPLLPGARLRILGPLEARLVSVDRMVLAGLVEGTWPSAVR 633 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+LSR M++ L L+ E+ IG +AHDF G LI + + PT+ SR+LQRL Sbjct: 634 TDPWLSRPMRAALGLEAPERRIGLSAHDFAQGCGAPELILSHPRKLGGAPTVPSRFLQRL 693 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + G + K RG + ++ RP+P PP+E +P+ S +EI+ + Sbjct: 694 EAVSGEARWKMAKLRGDRFRRLAALIEEAPAASRIARPEPAPPVELRPKRLSVTEIETWL 753 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 DPY +YAR +L+L + + P +RG+ H+ + + E + Sbjct: 754 RDPYTIYARHVLRLRPLDMLDEAPGAAERGSAIHDALGAFAQAFPEALPAEPEAGLLAFG 813 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 F + P +W F ++ ++ E ++ ++F + +MA+ LT Sbjct: 814 REAFRELEAFPAEYALWWARFERLVPRYIGWERARRADTRRVFAELGGRMALAGGRFALT 873 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G ADRI+ L+ G + I D+KTG P + PQL LEAA AG F + A Sbjct: 874 GRADRIEQLREGGLAIIDFKTGAVPTAKQTAAHYSPQLPLEAAMAAAGGFRDLPAEGAAA 933 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 L Y+RL + D+ + + L+ +L+ L +++ ++ + + S R + Sbjct: 934 LTYVRLGTSELKEVGAVDRDETAFG-LAASTLERLEQLIATFEDPSRGYASLARPMFRGR 992 Query: 1020 IQSEYDHLARVAEWREEYD 1038 +YDHLARV EW + Sbjct: 993 F-GDYDHLARVKEWSTGGE 1010 >gi|83594764|ref|YP_428516.1| hypothetical protein Rru_A3435 [Rhodospirillum rubrum ATCC 11170] gi|83577678|gb|ABC24229.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170] Length = 1018 Score = 515 bits (1325), Expect = e-143, Method: Composition-based stats. Identities = 291/1056 (27%), Positives = 467/1056 (44%), Gaps = 70/1056 (6%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V TI PF + +++ +PL VT+ +PT+RA + LR F+ I Sbjct: 6 VQTIPAGLPFLDTLAAGIVD-----RLGDRTADPLAATRVTVLLPTRRACRALREAFLRI 60 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLS------YNLNPPVSNIQRLLELARLILIWRN 121 G K+ +LP I LGD+ E++ L + PP++ ++R + LARLIL + Sbjct: 61 EGGKAALLPRILPLGDLEEDESAGAGLADGALRPTLDFAPPIAPLERQVLLARLILARDS 120 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--EKYGM 179 D +PA A+ LA++LA ++D+ +TE + AL Sbjct: 121 AKATAGGDSAM--------TPAQALRLAQDLAGLLDLAQTEHIDLSTVAALVPQTSPLAE 172 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGS 238 W L DFL + + W L +A P ++ ++ A+A +I AGSTGS Sbjct: 173 HWQLTLDFLALLTSVWPGLLAAHHALDPADHRNKVLDAQAAAWAAHPPAGPVIAAGSTGS 232 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 +PATA L++T+A+ P G +VLPGLD + W + + +HPQ + + Sbjct: 233 VPATAALLATIAHLPQGLVVLPGLDIGLDDESWEALED-------------SHPQAGMKR 279 Query: 299 LLDFLDIKREDVKRLGNVSN-----EMYGRSMVISKSFLPPDTSDMRNTDILENK--IPN 351 LLD L + R+ V+ R++++ ++ P T+D Sbjct: 280 LLDTLGLSRQAVRFFSETPPRGAIAAPPARALLVREALRPAATTDRWRRLRESGPSGGEA 339 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 + V L+ A REEA +IA+ +R +L+ + +ALIT DR LARRV L R+G+ Sbjct: 340 FARALDGVTLVRAAGPREEAAAIAVMMRGALETPGRTAALITPDRALARRVAAALGRWGL 399 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 +D SAG PLS T + L A+ +A+ +L++HPLA G L Sbjct: 400 RVDDSAGRPLSQTPVGAFLRLAAQAVADGLGPVALLSLLQHPLAAGGEDPVVFRARLRLL 459 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + LRG + + L + ++ + + ++ + Sbjct: 460 DREVLRGPRPDPGVAGLAQAI----------------KAADDPDMERHLGGWLERLEALA 503 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ-NVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 P T + I + + E LW ++G+ + L + Sbjct: 504 GPFCTLMDSDEPVDVAALIDAHMRFCEGLAEAREGGVEKPGATRLWAGDDGEAAALLGAD 563 Query: 591 IIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + E + + ++ L+DG V+PK + S LF+ G LE+RL D LILGGL Sbjct: 564 LTEAAPSLGAIAPRHYPALLDALMDGRAVRPKRDLHSRLFLWGPLEARLQRADLLILGGL 623 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 NEG WP P++SR M + L E+ IG AAHD A + TR+LR P Sbjct: 624 NEGGWPAAVDTGPWMSRPMLDQIGLPQPERRIGLAAHDVSQALCAPEVAITRALRVEGTP 683 Query: 710 TIASRWLQRLLVLGGTD----FFDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLE 764 T+ SRWL RL + G + ++RG L R L+ ++ P+P PPL Sbjct: 684 TVPSRWLTRLDAVIGATGLDKEWAKARQRGDRLLALARSLEQPQGERKPCPAPEPRPPLA 743 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 +PR S + I+ + DPYA+YA+ IL L + + DP +D GTL H + + + Sbjct: 744 DRPRRLSVTRIETWMRDPYALYAQFILGLSELDPLEADPGVSDYGTLVHGALEDFVGLYP 803 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + ++ F P + W F +I+H E E + + I ++F Sbjct: 804 KDLPGDPEAEIIRLGTLRFAPHMTRPGVRAFWWPRFLRIAHWIAEREIERRPEILEVFAE 863 Query: 885 IPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 A+M + + LT ADRIDL + G + + DYKTG P K+ + + PQL LEA Sbjct: 864 RRAEMTLTGPAGPFILTAKADRIDLRRDGTLAVIDYKTGMLPSKKEVESGLSPQLPLEAL 923 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 G F I + V++L + +L+ I + + ++E + K L +++T Sbjct: 924 LASRGCFPGIAGKPVSDLGFWKLRGDRLGGEIR--QAADDPEGVAEAAHKGLSDLITAFD 981 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 N + P+ + + Y HLARV EW E+ D Sbjct: 982 NPDTPYFARPHPDHAPRF-NPYQHLARVKEWAEKGD 1016 >gi|294675595|ref|YP_003576210.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB 1003] gi|294474415|gb|ADE83803.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB 1003] Length = 977 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 262/1051 (24%), Positives = 427/1051 (40%), Gaps = 96/1051 (9%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M P VF + P F RE++ L+ R P +A V + + R + + Sbjct: 1 MPPADPQVFALPPGVDFARELVQGLVQ-------RMRDEPPEAMARVRLILNAGRMSRRV 53 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 R EF G + LP I+ + D+ + L PV ++R LELA L+ Sbjct: 54 REEF---DGLGTRFLPRIELISDLAR-------VPMPGLPAPVPALRRKLELACLVDRLA 103 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGM 179 LP L +L ++ +++E E L + Sbjct: 104 RGLPGFETGSG-------------VFSLTDSLLALLAEMQSEGVHPEVFERLDIQASHAE 150 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 W + F++I S+Y+ L + + + + II+AGSTGS Sbjct: 151 HWRQSLAFIRIVSRYFETDLDAEG-----RQRRVVETMARTWADRPPQERIILAGSTGSR 205 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 AT LM VA P GA+VLPG D +P W ++ S HPQ+ L Sbjct: 206 GATRLLMQAVAALPRGALVLPGFDFDMPEPAWASL-------CSGPIPIEDHPQFRFRAL 258 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 LD L + V R E GR+ ++S + P +D + + ++ ++V Sbjct: 259 LDGLTLSPAQVARWTETLPEAPGRNALVSLALRPAPVTDQWMREGQA--LADLPAACANV 316 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 LIEA + R+E+++IA+ LR ++ KK+ALI+ DR L RRV L R+ I D SAG Sbjct: 317 TLIEATDPRQESLAIALVLREAV-FRGKKAALISPDRMLTRRVAAALDRWSILPDDSAGQ 375 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRG 478 PL T ++ L + ++ ++KHPL G R EL R Sbjct: 376 PLPLTAPGRLIRHLARLPGRKIPMESLLVILKHPLVATGSALRGAHLRLTREFELSLRRK 435 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 D L+ D Q + + Sbjct: 436 GPAFPDAEALRDWGGT-----------------------------ADPERQHWSDWLAAL 466 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN--LWFEEEGKTLSSLFSKIIETG- 595 + GN +S W + L + LW E G+ S + Sbjct: 467 IDAVPAGGNHPVSAWLETLSALLDGFAAGPGGSVAASELWLGEAGQAAFRTLSDLAAQDE 526 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + + +A + D+I L++ V+ + + LGTLE+R + ++L GLNE WP Sbjct: 527 TGLTVSAANFADLIDTLLNEGQVRSTLAAHPLVTFLGTLEARAHGAELVVLAGLNEKSWP 586 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + + +P+LSR M+ D L E+ IG +AHDF+ A ++ +R+ R++ T+ SRW Sbjct: 587 EAPSPDPWLSRKMRLDAGLLLPERQIGLSAHDFQQAIAAPEVVLSRARRDSEAETVPSRW 646 Query: 716 LQRLLVLG-------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 L RLL L G + ++ RG +LD +LD ++ P Sbjct: 647 LNRLLNLAGGLTAAQGPEALAQMRARGARFLDLASQLDLPQERLAPAPRPAPRPPAEARP 706 Query: 769 T-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + IK LI DPYA+YA RIL+L + K P+ RG H ++ + KN Sbjct: 707 RQLPVTAIKTLIRDPYAIYAARILRLRPLDPLKPGPNPRLRGEALHRVVELFVTGFDPKN 766 Query: 828 TPEI-NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + ++ ++ ++ P +W H +I+ + E + ++ + Sbjct: 767 SLDSGQKHLSELAETVLQEMIPWPSTQRLWLHRLLRIAPQLVAQEAQRRAEATPAVIETS 826 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 A + + G LT DRIDL G + DYK+G PK+ + D QL LEAA ++ Sbjct: 827 ASIELGPTGFTLTARPDRIDLQHDGTALVYDYKSGTPPKEAEV-RHFDKQLLLEAAMIER 885 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 G+F+QI R+VA + Y+ L + + ++ ++ L E++ Q Sbjct: 886 GAFAQIGPRQVAGMSYVHLGGSGECRMLALGRED------VAQTWTRLQELIARYLARSQ 939 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F + + +I +YDHL+R EW Sbjct: 940 GFAARRAMQMSRDI-GDYDHLSRFGEWDITD 969 >gi|158422337|ref|YP_001523629.1| hypothetical protein AZC_0713 [Azorhizobium caulinodans ORS 571] gi|158329226|dbj|BAF86711.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 1015 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 309/1038 (29%), Positives = 499/1038 (48%), Gaps = 35/1038 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFTI S+PF + + A+L+G LV F +PL LAS TIY+PT+RA + +E Sbjct: 3 RVFTIPSSAPFLKTLAHAMLDGHLVPGFAPRG-DPLALASATIYLPTRRAGRLFADAMLE 61 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPD 125 G ++ +LP I LGDV E+ + P V+ + R + LA L+ WR+ L + Sbjct: 62 AVGGEAVLLPRIVPLGDVDEDALAFSEEAALLAPPQAVAGVHRRIALAGLVARWRDALAE 121 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 E + PA + LA L + D + T W L L E++ ++ ++ Sbjct: 122 ------GEGQAMVAAGPAATMALADELGRLFDQMTTAGIAWSRLDDLVPEEHDAYFEISL 175 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATA 243 FL+IA + W L E+ P + AL+ AE L GP+I AGSTGS+P TA Sbjct: 176 QFLRIARQAWGAHLEEMGLVDPAERRDALVGAEERRLAALGAGAGPVIAAGSTGSLPTTA 235 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 RL+ +A+ P GA+VLPGLD H+ + + T+ T+ HPQ+ LAKLL L Sbjct: 236 RLLKAIASLPQGAVVLPGLDLHMEETAFQLL-------TAEATSAPDHPQFGLAKLLGTL 288 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 ++R DV L + +GR ++S++ +T++ + + ++V +++ Sbjct: 289 GLERRDVTAL--ATPAPWGREALLSEALRQSETAEQWASLSERLPDAKRAQALAEVRVVK 346 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 A + REEA+++A+ LR +L + ++AL+T DR+LARRV EL RFGI ID SAG+PL+ Sbjct: 347 ALDPREEALAVALELRDALTKPDMRAALVTHDRDLARRVAAELERFGIAIDDSAGVPLAE 406 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 T + + + + + + + L+ P + L+ A ALEL+ALRG + Sbjct: 407 TQPARLARLVAKTVAEGCAPVPLFALLSQPGLSLDLAPEILAEAVAALELIALRGPRPRS 466 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L A H + R+ E+ + LA LV ++ + PL Sbjct: 467 GA---AGLAAAVAAFDAAKVHERDPRRRVGEDRQALAADLVARLVPALEPLSALAEA--- 520 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 G + ++D + ++++ + + + L + Sbjct: 521 --GKVPLADLVAAHIATIESLTAPLDPDANDPAWASLAEAL---IDIRDGAPAGPAMTLA 575 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + D I+ L+ V+P+ + ILG LE+RL+ D ++LGGL EG WP T +P+ Sbjct: 576 AYADAISALLADRVVRPRQRGEERIRILGPLEARLVAVDRVVLGGLVEGSWPPETRTDPW 635 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 LSR M+++L L E+ IG AAHDF A G R ++ T + ++ SR+LQRL + Sbjct: 636 LSRPMRAELGLDQPERRIGLAAHDFAQAFGAREVVLTYPDKVGGTQSVPSRFLQRLSTVA 695 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 G D + RG+ + +LD + P +P P PP E +P+ S +E++ + DPY Sbjct: 696 GEDLWQAAIARGEAWRQAAARLDDGPRVPRAAQPAPKPPRELRPKKLSVTEVETFLRDPY 755 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 +++AR +L L + P +RG+ H+ + K P+ + + F Sbjct: 756 SIFARHVLALQPLEALDAAPGGAERGSALHDALGAFAKDYPEDLPPDAHAQLLAYGRRAF 815 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGF 901 EK + P IW F +++ +E E + ++S++++ + I + LTG Sbjct: 816 EKLEVFPAEHAIWWARFERVAAFVVEFERERRASLKRVVAETGGGLPIRLLHSDFQLTGR 875 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 ADRI++ G ++I DYKTG P + PQL LEAA G F + VAN Sbjct: 876 ADRIEIRTDGELNILDYKTGTAPSAKQGAT-FSPQLPLEAAMAVRGGFRDVPAANVANFL 934 Query: 962 YIRLKQKF-KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ LK +K SA ++E +L+ L E++ +N EQ + + L + Sbjct: 935 YVELKGGAVAGREKPGVDEKSSAMAMAEDALERLRELLLAFENEEQGYRA-LAAPQWRGR 993 Query: 1021 QSEYDHLARVAEWREEYD 1038 YDHLARV EW + Sbjct: 994 FGPYDHLARVREWALGAE 1011 >gi|83309520|ref|YP_419784.1| hypothetical protein amb0421 [Magnetospirillum magneticum AMB-1] gi|82944361|dbj|BAE49225.1| Inactivated superfamily I helicase [Magnetospirillum magneticum AMB-1] Length = 975 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 284/1036 (27%), Positives = 437/1036 (42%), Gaps = 75/1036 (7%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 VFTI P + F + LL +PL LA + I +PT+RA + + F+ + Sbjct: 7 VFTIPPGAAFVDTLAAQLLAE--------AGGDPLALADMEILLPTRRACRAMSDAFLRL 58 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 +G + +LP ++ LGD+ EE+ +L P VS +R+L LARLIL + Sbjct: 59 SGGRPLLLPRLRPLGDMDEEELELSGADPLDLPPAVSPTERVLILARLILTAAQAQKGHV 118 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 SP A+ LA LA ++D ++ E + L L E Y W L F Sbjct: 119 P------------SPDQAVRLASELAKLLDAVQVERLDFAGLAKLVPEDYADHWQLTLKF 166 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLM 246 L I ++ W L E P +M A+ E + + +I AGSTGS PATA L+ Sbjct: 167 LTILTEAWPRILAERGTLDPEDRLNRVMAAQIEAWRVRPPRHKVIAAGSTGSRPATADLL 226 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + VA P G +VL GLD + A W + HPQY L LL L ++ Sbjct: 227 AAVAALPAGRVVLAGLDRAMDEASWAALDPA-------------HPQYGLKALLARLGVE 273 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R V+ L + + R +++++ P T + + + V +EA Sbjct: 274 RHGVRPLTSDVDLRQDRVRLLAEALRPAATCEAW-----RDLPALDARVLDGVWRLEAPT 328 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 REEA +IA+ +R LD +AL+T DR LARRV EL R+GI ID SAG PL Sbjct: 329 PREEAGAIALMMRRELDRPGHTAALVTPDRGLARRVAGELERWGIRIDDSAGRPLGLNEP 388 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + L + + A+ +KHPLA G LE + LRG + + + Sbjct: 389 GAFLRLAVEMVADEFSPHALLACLKHPLAAGGMETGAFRALVRRLERLNLRGPRPAPGVA 448 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L+ V DR + + PL Sbjct: 449 GLRQAVKDR-----------------------RLSSWLADLETMAAPLADRLKADEG--- 482 Query: 547 NLSISDWTKLTVTCLQNVCLDE--HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S++D + + + + D+ E + Sbjct: 483 --SLADLLRAHMEFAEWLAGDDLLPGPARLWRGEAGEAAARFAADLAAAAPALGDLAGHC 540 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + + L+ V+ + LFI G LE+RL + D LILGGLNEG WP +P++ Sbjct: 541 YPALFDELMGAVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAPPEADPWM 600 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 SR MQ+ L E+ IG +AHDF ++ +RS R + PT+ SRWL RL + Sbjct: 601 SRPMQAAFGLAPPERRIGLSAHDFAQGFAAPRVVLSRSSRVDGTPTVPSRWLMRLDAVMK 660 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + GQ +LDW LD + + P P PP+ A+PR S +EI+ + DPYA Sbjct: 661 GSGLAFDQDAGQ-WLDWHALLDRPERWTRPEIPAPAPPVSARPRRLSVTEIETWMRDPYA 719 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 +YA+ +L+L + DP + G++ H + ++ + + +I FE Sbjct: 720 IYAKHVLRLRALDPIDADPGAAEYGSMVHEALELFLEAWPRDLPGDPQGELLRIGREVFE 779 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFA 902 + P + W F ++ E + + ++ + I + LT A Sbjct: 780 AKVTSPALWAFWWPRFDSVARWVAAKEVARRPGVARVHAEAGGALEIEAPAGPFTLTAKA 839 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 DR+D +K G + + DYKTG P+ PQL LEA + G F + +V+ L Y Sbjct: 840 DRLDEMKDGTLALIDYKTGTPPRAREVAAGFAPQLPLEAVIARHGGFGGVRAAEVSELLY 899 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 +LK + A L+ ++L+ L +V + + P+ + E + S Sbjct: 900 WQLKGGAQGGE--ERAAGGDAATLAAEALEGLHALVAVFDDPATPYAARPHP-EHAPKYS 956 Query: 1023 EYDHLARVAEWREEYD 1038 +Y HLARV EW D Sbjct: 957 DYLHLARVREWASGGD 972 >gi|221641018|ref|YP_002527280.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides KD131] gi|221161799|gb|ACM02779.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides KD131] Length = 982 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 263/1032 (25%), Positives = 422/1032 (40%), Gaps = 94/1032 (9%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 F ++ L R P +A V +YV T+R + + L Sbjct: 2 DFPAALVRGL-------RARMAGAAPEAMARVELYVNTQRMRRRITELMTAEGAG---FL 51 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P I+ + ++ L PV ++R LELA+L+ PDI Sbjct: 52 PRIRLVTEL---------PPVPGLPAPVPPLRRRLELAQLVARLIEAQPDIAPR------ 96 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 + L+ +LA++ID ++ E E + L + W F+ I + + Sbjct: 97 -------SALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHWQRTQAFMAIVAPMF 149 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + + ++A+ R A P+I+AGSTGS T+ M VA P G Sbjct: 150 GADAPD----AQALARMAVERIAARWAEAPPDHPVIVAGSTGSRGTTSLFMQAVARLPQG 205 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A+VLPG D +P A+W + + T HPQ+ +L+ + +V R + Sbjct: 206 ALVLPGFDFDLPAAVWEGMDDAL--------TAEDHPQFRFHRLMGLVGAGPAEVGRWTD 257 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R+ +IS S P +D T+ + + + + LIEA R EA+++A Sbjct: 258 EIPPSPDRNRLISLSLRPAPVTDQWLTE--GRHLTGLAEAARGMTLIEAPGPRAEALAVA 315 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + LR + +E +++ALIT+DR L R+V L R+GI D SAG PL+ + L + Sbjct: 316 MILRKAAEE-GRRAALITSDRGLTRQVAAALDRWGIVPDDSAGKPLALSAPGRFLRHVAR 374 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + A+ TL+KHPL G R LEL R DL Sbjct: 375 LFGRRLTGEALLTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPFPAAADLALWA--- 431 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + + I L + Sbjct: 432 -----------------GPRPADGVADWARWLGGLIEGLDAAGPRPLAD-------HVAA 467 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLID 614 LW +E G+ + ++ E + ++ D+ ++ Sbjct: 468 HLALAEALAAGPAGTTTGELWLKEAGEAARAAVEELRREAPHGGELTPADYADLFDAILA 527 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 V+ ++ L I GTLE+R+ D +ILGGLN+G WP+ +P+L+R M+ L Sbjct: 528 RGEVREAVQARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGL 587 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL-------GGTDF 727 E+ IG +AHD+ A ++ TR+ R+ T+ SRWL RL+ L GG + Sbjct: 588 LLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMNLMSGLKAGGGPEA 647 Query: 728 FDNLKKRGQCYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 ++ RG+ +LD L+ P RP P PP+ A+P + + I+ LI DPYAVY Sbjct: 648 LAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVTGIRTLIRDPYAVY 707 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEK 845 AR IL+L + + PD RG++ H I+ +K R + P + +I ++ + Sbjct: 708 ARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAERARLMRIAEAVLAE 767 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 E P +W + + FLE E + + ++ + + LT DRI Sbjct: 768 EVPWPAARALWLARLDRAADFFLETEAAHA--GTPVVLEEEGRVDLTPLRFTLTAKPDRI 825 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 D+L G + I DYKTG P K+ ++ D QL LEAA + G F + +VA + YI L Sbjct: 826 DVLPDGRLHILDYKTGTPPTKKQQEQ-FDKQLLLEAAMAERGGFRGLGPAEVARISYIGL 884 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 K++ + D L + + L ++ EQ ++S R +YD Sbjct: 885 GTSLKVESVETDAA------LLGQVWEGLHALIGRYMRREQGYVSR-RAMFGERFPGDYD 937 Query: 1026 HLARVAEWREEY 1037 HLAR EW Sbjct: 938 HLARFGEWEMSD 949 >gi|159045977|ref|YP_001534771.1| double-strand break repair helicase AddB [Dinoroseobacter shibae DFL 12] gi|157913737|gb|ABV95170.1| double-strand break repair helicase AddB [Dinoroseobacter shibae DFL 12] Length = 988 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 265/1045 (25%), Positives = 434/1045 (41%), Gaps = 80/1045 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P VF + F E + LL R P LA V I V T R + L+ Sbjct: 7 AQDSPRVFGVPIGLDFPAETVAGLLE-------RLGSQPPHALAQVEILVNTGRMQRRLQ 59 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + ++ LP I+ + D+ E + +S ++R+L+L RL+L Sbjct: 60 EVLSDR--GRAGFLPKIRLITDLGTE------AGTDPAPATLSPLRRMLDLRRLVLGLLE 111 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 PD+ + A+ L +L +++ E E E L AL E W Sbjct: 112 TTPDLAPR-------------SAALDLTISLVSLLEECEGEGVSLEQLAALDVEDLSAHW 158 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A F+ I + + + + A++R A+ + PI+IAGSTGS Sbjct: 159 QRALAFISIIGPFLKDSGGAVGP--EGRQRAAVLRKIAQWQDTPPRHPILIAGSTGSRGT 216 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TA LM+ VA P GA++LPG D P +W +++ HPQ+ A+LL Sbjct: 217 TALLMTAVARLPQGALLLPGFDTDQPPKVWAEMSDALIG--------EDHPQFRFARLLQ 268 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ + + + GR+ ++S + P +D + ++ + ++ L Sbjct: 269 ALDLDPASLPLWTDTAPPAPGRNRLVSLALRPAPVTDQW--RAEGPDLRDLPEALANTTL 326 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 IEA ++REEA+SIA+ALR S K++ALIT DR L R+V L R+ I D SAG PL Sbjct: 327 IEAASQREEALSIAVALRDSAA-AGKRAALITPDRGLTRQVTAALDRWRIEPDDSAGRPL 385 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNK 480 + L+ + + A+ L+KHPL R LEL + Sbjct: 386 VLSAPGRFLSHVAAMMGAELSASALLILLKHPLTHSERPDRGDHLRHSRDLELHLRKAPF 445 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L++ SR +D +L + PL T + Sbjct: 446 VELSEARLRAWAA-------------SSPSRTDSPADPARAAWMDWVLATVGPLTTLEDA 492 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIK 599 T + + LW + G+ ++ + E Sbjct: 493 PLDTLATVHR-------NASERLAAGPGAEGAGGLWDKTAGEKAKAVLDALALEAAHGGS 545 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + ++ ++ R++ E V+ + + I GTLE+R+ D +IL GLN+G+WPK Sbjct: 546 FASGDFAALLARMLAQEEVRDPVRPDPRIMIWGTLEARVQGADVVILAGLNDGIWPKRPD 605 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 +P+++R M+ + L E+ +G +AHDF+ A G R +I TR+ R++ T+ SRWL R+ Sbjct: 606 PDPWMNRKMRHEAGLLVPERQVGLSAHDFQQAMGAREVILTRATRDSEAETVPSRWLNRI 665 Query: 720 LVLGG------TDFFDNLKKRGQCYLDWTRKLDYTTKQ-PHYKRPKPFPPLEAQPRTYSF 772 L ++ RG + R LD P KRP P P P S Sbjct: 666 TNLLEGLSDESRAALAGMRTRGAAIVTRARGLDRPAAVMPLAKRPSPIPAPGQFPPRISA 725 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S ++ LI DP+ +Y +L L + + D RGT+ H ++ + + + T Sbjct: 726 SRVETLIRDPFEIYCGTVLGLRPLDPLDRPADAALRGTVLHKVLETALSQVMA-GTEMTA 784 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 L++QI ++ P + WR F + E E + ++ + Sbjct: 785 TLLRQIAARVLDEHVPWPEVRTQWRARFESYATQLAEAEVARLRRATPAALERRGELTLA 844 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 S G+ LT ADRID+ G I DYKTG P ++ + QL LEA +AG F + Sbjct: 845 S-GVRLTCEADRIDIAPDGTAIIYDYKTGTVPGEKEVEA-FTKQLHLEAVIAEAGGFEDL 902 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 V+ + Y+++ + KI +T + ++ +I+ +GE+ F + Sbjct: 903 PPLTVSEIAYLQINKDLKIRALTFEPGDVG------RARDEFAKIMDDFLSGERSFTAR- 955 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R+ S+YDHL+R EW + Sbjct: 956 RMPRDMKYVSDYDHLSRFGEWDQSD 980 >gi|258543654|ref|YP_003189087.1| nuclease [Acetobacter pasteurianus IFO 3283-01] gi|256634732|dbj|BAI00708.1| nuclease [Acetobacter pasteurianus IFO 3283-01] gi|256637788|dbj|BAI03757.1| nuclease [Acetobacter pasteurianus IFO 3283-03] gi|256640842|dbj|BAI06804.1| nuclease [Acetobacter pasteurianus IFO 3283-07] gi|256643897|dbj|BAI09852.1| nuclease [Acetobacter pasteurianus IFO 3283-22] gi|256646952|dbj|BAI12900.1| nuclease [Acetobacter pasteurianus IFO 3283-26] gi|256650005|dbj|BAI15946.1| nuclease [Acetobacter pasteurianus IFO 3283-32] gi|256652995|dbj|BAI18929.1| nuclease [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656049|dbj|BAI21976.1| nuclease [Acetobacter pasteurianus IFO 3283-12] Length = 1029 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 264/1069 (24%), Positives = 452/1069 (42%), Gaps = 86/1069 (8%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 + TI PF ++ + N + I +P +RA + L F+ Sbjct: 2 KLATIPAHLPFLDQLA--------LRWIETAHHNIEAIGEGIIVLPGRRAARALTEAFLR 53 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADL----LLSYNLNPPVSNIQRLLELARLILIWRNK 122 +S +LP I +G + E + L+ +L P V+ + RL LARL+L Sbjct: 54 HMDGQSVLLPRIVPIGALDEAELGLSAGIGGELALDLPPAVAGMTRLAVLARLVLQ---- 109 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWW 181 + + A LAK LAD++D E E L E + W Sbjct: 110 ---------ADKAFGTRPTLDQAWPLAKALADLMDEAEWSGVNLAERLPEAVQENFAEHW 160 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK----GPIIIAGSTG 237 + FL+I ++ W E L E +PV Q+AL+ A+A+ K + PI AG T Sbjct: 161 QIILRFLEIVTQAWPEWLKENGVMNPVARQVALLEAQADLWRKLAQQGEITPIWAAGFTH 220 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + T +++ V P G I+LPGLD + + ++ + +HPQ L+ Sbjct: 221 VMQPTVKVLQAVLECPAGKIILPGLDMMMAEETFLSLPD-------------SHPQAGLS 267 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 LL L+I R+ V+ R+ +++ LP + L + + Sbjct: 268 SLLKNLEITRDKVEVWEGEGTGSE-RAATLARVLLPA--------EALGDWSHSGGAELE 318 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +V ++A +++EEA++I++ +R ++++ + AL+T DR LA RV EL R+G+ D SA Sbjct: 319 NVYRLDAADQQEEAVAISMIMREAIEKPAHRVALVTPDRVLAARVATELARWGVLADDSA 378 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T + +L + + +++ +++KHPL GF LE LR Sbjct: 379 GSSLVDTPAAVLLRLVAQMVDSKFSPVSLLSVLKHPLVACGFAAGVCRATARLLERAILR 438 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL--LVDHILQCITPLV 535 G L +V + ++ L ++ + C+ P++ Sbjct: 439 GPAPPPGFAALCQVVKSALENPNEREKAKLEGGVTADRPFGPVALSVFMERLEFCLEPVL 498 Query: 536 TYKTNKNST---------CGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLS 585 ++ + + D + ++ + DE LW EEG L+ Sbjct: 499 GWELDAAEAGMQIAQDLEQHCAPVPDLLAALIATVERLVATDEESASERLWRGEEGNLLA 558 Query: 586 SLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEK-----SSTLFILGTLESRLL 639 S ++++ + +D ++T ++ E V + + I G ESRL Sbjct: 559 SQLTELMLASEVLPPQPPVVLDGLLTAVLAPERVAMRRGGDPKSLHPRVLIWGLFESRLQ 618 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLI 698 +T+ILGGL+EGVWP P++SR M+ + L + E+ +GQA HDF A +I Sbjct: 619 TAETVILGGLSEGVWPPVVDAGPWMSRPMRQRMGLPSPEQAVGQAGHDFFASAAAAGTVI 678 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRP 757 + + R P + +RWL RL L W KLD P Sbjct: 679 LSSARRREGAPVVPARWLTRLDAFLAG---RKGHIPNHPALLWLNKLDQPVGPAIPVAPP 735 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 +P PP+ +PR S +EI+ I DPYA+YA+ IL+L+ +P ++ D +D G + H + Sbjct: 736 QPMPPVALRPRRLSVTEIETWIRDPYAIYAKHILRLEVLPELEEAADASDYGMIVHKALE 795 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + + ++ L P + W +I+ ++ EEK ++ Sbjct: 796 RWVKAYGVTWPDNAEKKLCDLFSESLQEHVLRPALRAWWAPRLTRIAQWVVQAEEKRRNE 855 Query: 878 I---EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 I I +++I + G ADRI+L G V + DYKTG P + Sbjct: 856 HGVPRAILTEIRGRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLPSAKDVLA 915 Query: 932 LIDPQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELS 987 PQL LEAA + G F ++ R++++L Y RL + + ++ S +L+ Sbjct: 916 GWSPQLPLEAAMIIRGGFKEVPEHSREISDLIYWRLTGGAEPGEEVVVKTREALSLTDLA 975 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 E++ +NL+ + +QP++SH + +Y LARV EW Sbjct: 976 EQTWENLLLRIAAYDQPDQPYLSHPHPGREPRFA-DYARLARVPEWNSA 1023 >gi|241761922|ref|ZP_04760007.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373602|gb|EER63174.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 993 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 241/1055 (22%), Positives = 411/1055 (38%), Gaps = 96/1055 (9%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 +K +FTI F ++ L+ +P+ LA I +P R+I+ + Sbjct: 3 EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119 F+ + +LP + +GD + + L + L P + ++R L RL+ Sbjct: 54 FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175 K I A LA+ LA +D + E E L L E Sbjct: 113 MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIDPEQLTQLIDPMAEE 159 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233 + W + L+ W E L + + L+ A+ PII A Sbjct: 160 ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291 G+ P +ARL+ ++ +G +VLPGLD ++ W + + + + +H Sbjct: 220 GAITGSPVSARLLRVISEMEDGLVVLPGLDNNMSDEEWQLLGPHERDPDTGIKQPSLESH 279 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350 PQ+ L LLD + + R++V N R I P +D +P Sbjct: 280 PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 ++ F ++++IE + EEA IA+ALR +++E + +AL+T DR LA RV L RFG Sbjct: 334 EKERAFPNLSVIETAHPEEEAQVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFG 393 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I+ D SAG PLS T +L L++ ++ + KHPL FG + Sbjct: 394 IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRS 453 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L+++ RG + + + + + + Q + + W + Sbjct: 454 LDMIL-RGPLLRNGLAGITAKIKEAVDHQTADPELLEWW---------------EKTKIP 497 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 L L ++ K+ + +W E G + L ++ Sbjct: 498 FQALD------QQFQTVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545 Query: 591 I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 I + ++ ++ +L+D + V+P +FI G +E+RL + D +I Sbjct: 546 IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNE VWP +P+L+ ++S+L L E IG AAHDF G + ++ TR+ R+ Sbjct: 606 LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 PT+ SR+ RL + W R+LD RP P PP+ +P+ Sbjct: 666 PTMPSRFWLRLEAMASNLH------HADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPK 719 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + + L +DPY+ YA IL L + +P RG+L H+I+ +K+ ++ Sbjct: 720 RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRIG 779 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887 + + E N +W + +K + + V Sbjct: 780 KLKPRAL-----AFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREG 834 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + I GI L GF DRID + G + I DYKTG P + QL L ++ Sbjct: 835 RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAAVKNGDMLQLVLLGLLIEHN 892 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000 I +V+ Y + Q K + + K ++ + + I + Sbjct: 893 GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 + + PF + +K + +Y L R EWR Sbjct: 952 YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984 >gi|260752462|ref|YP_003225355.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551825|gb|ACV74771.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 993 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 243/1055 (23%), Positives = 413/1055 (39%), Gaps = 96/1055 (9%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 +K +FTI F ++ L+ +P+ LA I +P R+I+ + Sbjct: 3 EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119 F+ + +LP + +GD + + L + L P + ++R L RL+ Sbjct: 54 FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175 K I A LA+ LA +D + E E L L E Sbjct: 113 MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIAPEQLTQLIDPMAEE 159 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233 + W + L+ W E L + + L+ A+ PII A Sbjct: 160 ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291 G+ P +ARL+ ++ G +VLPGLD + W + + + + +H Sbjct: 220 GAITGSPVSARLLRVISEMEGGLVVLPGLDNSMSDEEWQLLGPHERDPDTGIKQPSLESH 279 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350 PQ+ L LLD + + R++V N R I P +D +P Sbjct: 280 PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 ++ F ++++IE + EEA IA+ALR +++E + +AL+T DR LA RV L RFG Sbjct: 334 EKERAFPNLSVIETAHPEEEAQVIALALRAAVEEKGQTAALVTPDRALAIRVSALLKRFG 393 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I+ D SAG PLS T +L L++ ++ + KHPL FG + Sbjct: 394 IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRS 453 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L+++ RG + + + + + + QK + + W + Sbjct: 454 LDMIL-RGPLLRNGLAGITAKIKEAVDNQKADPELLAWW---------------EKTKIP 497 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 L L ++ K+ + +W E G + L ++ Sbjct: 498 FQALD------QQYQSVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545 Query: 591 I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 I + ++ ++ +L+D + V+P +FI G +E+RL + D +I Sbjct: 546 IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNE VWP +P+L+ ++S+L L E IG AAHDF G + ++ TR+ R+ Sbjct: 606 LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 PT+ SR+ RL + W R+LD RP P PP+ +P+ Sbjct: 666 PTMPSRFWLRLEAMAANLH------HADNLPYWARQLDEPKGFRPVTRPAPNPPVLDRPK 719 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + + L +DPY+ YA IL L + +P RG+L H+I+ +K+ ++ Sbjct: 720 RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSR-- 777 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887 +K + E N +W + +K + + V Sbjct: 778 ---IGRLKPRALAFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREG 834 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + I GI L GF DRID + G + I DYKTG P + + QL+L ++ Sbjct: 835 RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAASVKNGDMLQLALLGLLIEHN 892 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000 I +V+ Y + Q K + + K ++ + + I + Sbjct: 893 GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 + + PF + +K + +Y L R EWR Sbjct: 952 YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984 >gi|16127767|ref|NP_422331.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15] gi|221236587|ref|YP_002519024.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000] gi|13425271|gb|AAK25499.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15] gi|220965760|gb|ACL97116.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000] Length = 996 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 267/1050 (25%), Positives = 440/1050 (41%), Gaps = 80/1050 (7%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + P ++I PF ++ LLN +PL P L T+ PT+R + L Sbjct: 10 REGPRWYSIPAHRPFVDDLARGLLNT-------LEPLGPEALPRATVLTPTRRGARALAD 62 Query: 63 EFIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F+ + G ++ +LP I+ LGD+ E E LS L P +S+ +R ELARL+ + Sbjct: 63 AFLSVGGGRALLLPQIRPLGDLDEGEPPFEPGELSLTLPPAISSRRRRFELARLVTDHGD 122 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMW 180 KL S P A+ LAK L++ +D + EE ++D L L Sbjct: 123 KL-------------SFKPGPVQALELAKALSEFLDSCQIEEVNFDDKLDGLAEGDLAQH 169 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-GSTGSI 239 W ++A FL+ + W+ RL L ++ L+RA +++A GSTG+ Sbjct: 170 WQVSARFLRSVLRAWSTRLDTLGLIDVSERRVRLLRALEAQWRDNPPTEVLVAAGSTGTA 229 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L+ +A P GA+VLPGLD + W I + HPQ ++ +L Sbjct: 230 PATADLLRVIAAAPKGAVVLPGLDEDLADTAWAKIK---------GSQGEQHPQGAMKRL 280 Query: 300 LDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTD-----ILENKIPNIQ 353 LD + R +V+ V + R +++++ P + + + + + Sbjct: 281 LDRAGVSRAEVRAWVPEVDSRGRWRRRIVNEALRPAEATADWLSQIAALRAEAPGLDPVA 340 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + ++I A E E A + A+ LR +L++ + +AL+T D+ LARRV L R+G+ Sbjct: 341 EGLTGFSVIAARAEEEAAGACALLLREALEDPVRTAALVTPDQTLARRVMTRLQRWGVIP 400 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D SAG PL+ + + L + + + + + KHPL + + Sbjct: 401 DSSAGAPLAAAGSAILALHLARLVEEPLNPVRLLAFAKHPLVLGEDEVPAAALLERK--- 457 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + R + A+ L + +L + Sbjct: 458 ------------------------GLRGAAPGSADVLRARLREAPDALALAERVLVAVNH 493 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + + + LW G+ L +L + +I+ Sbjct: 494 AAAPYGDGALAAPARAAQALVEALESLIA---------PDRLWAGNAGECLGALMAALIQ 544 Query: 594 TGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 G + A+ + DI+ RL++ ETV+ L ILG +E+RL+ D L+L GL EG Sbjct: 545 DGEPLPDASPQAFGDILDRLVNEETVRVGGATHPRLRILGAIEARLVRADRLVLAGLEEG 604 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP+ +PFLSR M+ L L E+ IG AHDF A ++ R P + Sbjct: 605 VWPQGAPIDPFLSRPMRQRLGLPPPERRIGLTAHDFAQAASAPDVVLVHCERRGGAPAVE 664 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 SRWL RL L + R DW LD RP P PP+E +PR + Sbjct: 665 SRWLWRLKTLAAGAGLE--LPRRDDVTDWVSALDAPGPYAPIGRPAPKPPVEDRPRKMAV 722 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + ++ L DPYAV+AR ILKL + + + RGT H + + E Sbjct: 723 TRVEALTRDPYAVWARDILKLYPLERPDEPVEARARGTAIHAAFERFAELYPDAVPAEAA 782 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMA 890 +++ +PP + L + + + E + ++ + +I V ++ Sbjct: 783 SAFEKLYVDALVSAGMPPTALAREKALAREAAAWVADWERQRRTQVRRIVVEAEGKLELV 842 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I LT ADRI+ G I DYKTG P ++ PQL+L AA L G F Sbjct: 843 INGRPFTLTAKADRIEPTPDGTAHILDYKTGAAPSQKQVDTGFSPQLTLTAAILMNGGFP 902 Query: 951 QIDCRKVANLFYIRLKQKFKI-DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + +L Y+R+ + + K +++ + K+L+ L ++ + ++P+ Sbjct: 903 DLGRPAPGDLTYVRVTGRRPAGEEQVRAKGDGESEDAARKALEGLSSLIARYDDPDEPYR 962 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYDI 1039 S + +Y HLARV EW D Sbjct: 963 SRVAPQFVKEHPGDYAHLARVFEWSTSGDD 992 >gi|209965879|ref|YP_002298794.1| hypothetical protein RC1_2601 [Rhodospirillum centenum SW] gi|209959345|gb|ACI99981.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 1000 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 275/1045 (26%), Positives = 434/1045 (41%), Gaps = 65/1045 (6%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 + T+ P PF + +L+ +PL L+ VT+ +PT RA++ LR F+ Sbjct: 4 RLHTLPPELPFVDALAAGILDRI--------GADPLALSRVTVLLPTARAVRSLREAFLR 55 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 ++ + +LP + LG+V ++ L +S + Sbjct: 56 LSDGRPVLLPRLSPLGEVDADEVALSLEGLAGGAGGLSVPP----------AVSPLRRQL 105 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + L + A A LA LA ++D ++ E +E L AL + Y W + Sbjct: 106 LLARLILKAEGLAATTAQAARLAAELARLLDQVQAERLSFEGLRALVPDDYAGHWQVTLT 165 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARL 245 FL+I ++ W + L E + P + A + A A + GP+I AG TGSIPATA L Sbjct: 166 FLEIVTRLWPDVLAEEGCADPAVERDARLLALARAWELRPPPGPVIAAGVTGSIPATADL 225 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 ++ VA P GA+VLPGLD + A W + +HPQ L LL+ L Sbjct: 226 LAVVARLPQGAVVLPGLDLGMDDATWAGLD-------------ESHPQAGLKSLLERLGA 272 Query: 306 KREDVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 R DV + + RS V L T+ + V+ I Sbjct: 273 DRRDVTPWPLPATGPLAVAPRSPVARSRLLAEALRPAETTEAWRALPALSPDALAGVSRI 332 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 +A +EEA IA+ +R +L+ + +AL+T DR LARRV + L R+G+ +D SAG PL+ Sbjct: 333 DAPTPQEEAGVIALMMRQALETPGRTAALVTPDRALARRVAMALRRWGVEVDDSAGRPLA 392 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 T S L L + + + L+KHPLA G ALE LRG + + Sbjct: 393 LTPVGSYLRLLADFAATPA-PVGLLALLKHPLAAGGTDPAEFRALARALERAVLRGPRPA 451 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 L+ + + + + + + L + Sbjct: 452 EGFAGLRRALEAAEPRRFDGPEERSRLAGFLLDLERRIGGLCAAM--------------- 496 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-NLWFEEEGKTLSSLFSKIIETGSCIK-A 600 G ++DW +L + + +W ++G+ + + E Sbjct: 497 -ADGPRPLADWLELHGQAAELLAATAREPGALRVWAGDDGEAAARFLREAAEAARGFPDL 555 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ ++ L+ G V+P+ L ILG +E+RL FD ILGGLNEG WP Sbjct: 556 GGADYAALVEVLMAGRAVRPRYGLHPRLHILGLMEARLQQFDLTILGGLNEGTWPPAPPA 615 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 +P++SR M++ L E+ IGQ AHDF A G L+ TRS R + PT+ SRWL RL Sbjct: 616 DPWMSRPMRTAFGLPAPERRIGQTAHDFAQAAGAAELVLTRSERVDGTPTVPSRWLLRLD 675 Query: 721 VLGGTD------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + + +L LD+ + P P PP+ A+PR S ++ Sbjct: 676 TVLEAAGLSLAGPLRLPGRDAGHWLALQAALDWPERVRPCPPPAPAPPVAARPRRLSVTQ 735 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 ++ + DPYA+YAR +LKL + DP +RG H + ++ P+ Sbjct: 736 VETWMRDPYAIYARHVLKLQALEPVDADPGAAERGQFIHKALDAFVRTYPRTLPPDALER 795 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES- 893 + F P I W F +I+ FL E + + + + + + ++ Sbjct: 796 LLDAGREAFGPLLEQPAIRAFWWPRFERIAGWFLALEAERRGQVAVLATEVKGTLRLDGP 855 Query: 894 -IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 L+ ADRID L G + + DYKTG P + PQL LEA + G F + Sbjct: 856 AGPFVLSCVADRIDRLPDGALALVDYKTGTPPTARDIELGFAPQLPLEALIAQEGGFEGL 915 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 V L + +L + K ++L E++ L ++ L + P+ S Sbjct: 916 APAPVGELAFWKLTGGEPAGEVRPVKG--DLEDLVEQARAGLSRLIALFDDPATPYRSQP 973 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEY 1037 R S+Y HLAR+AEW Sbjct: 974 RPGRAPRF-SDYGHLARIAEWSAGG 997 >gi|329113821|ref|ZP_08242592.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001] gi|326696831|gb|EGE48501.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001] Length = 1029 Score = 496 bits (1276), Expect = e-137, Method: Composition-based stats. Identities = 262/1068 (24%), Positives = 454/1068 (42%), Gaps = 84/1068 (7%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 + TI PF ++ + + + I +P +RA + L F+ Sbjct: 2 KLATIPAHLPFLDQLA--------IRWIESANHDVEAIGEGIIVLPGRRAARALTEAFLR 53 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADL----LLSYNLNPPVSNIQRLLELARLILIWRNK 122 +S +LP I +G + E + L+ +L P V+++ RL LARL+L Sbjct: 54 HMDGQSVLLPRIVPIGALDEAELGLSAGIGGELALDLPPAVASMTRLAVLARLVLQ---- 109 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWW 181 + + A LAK LAD++D E E L E + W Sbjct: 110 ---------ADKAFGTRPTLDQAWPLAKALADLMDEAEWSGVNLAERLPEAVQENFAEHW 160 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK----GPIIIAGSTG 237 + FL+I ++ W E L E +PV Q+AL+ A+A+ K + PI AG T Sbjct: 161 QIILRFLEIVTQAWPEWLRENGVMNPVARQVALLEAQADLWRKLAQQGDSTPIWAAGFTH 220 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + T +++ V P G +VLPGLD + + ++ + +HPQ L+ Sbjct: 221 VMQPTVKVLQAVLECPAGKVVLPGLDMMMAEETFLSLPD-------------SHPQAGLS 267 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 LL L+I R V+ GR+ ++++ LP + L++ Sbjct: 268 ALLKNLEITRNKVQIWEGTGK-GAGRAAILARVLLPA--------EALDDWSHPGGAELE 318 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +V ++A +++EEA++I++ +R ++++ + AL+T DR LA RV EL R+G+ D SA Sbjct: 319 NVYRLDAADQQEEAVAISMIMREAIEKPMHRVALVTPDRVLAARVATELARWGVLADDSA 378 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T + +L + + +++ +++KHPL GF LE LR Sbjct: 379 GSSLVDTPAAVLLRLVAQMVDSRFSPVSLLSVLKHPLVACGFSSGVCRATARLLERAILR 438 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL--LVDHILQCITPLV 535 G L +V + + ++ L + + C+ P++ Sbjct: 439 GPAPPPGFAALCRVVNNALENLNERAKAKLEGGITADRPFGPVALSVFMQRLAFCLEPVL 498 Query: 536 TYKTNKNST---------CGNLSISDWTKLTVTCLQNV-CLDEHRKLPNLWFEEEGKTLS 585 ++ + + D + ++ + DE LW EEG L+ Sbjct: 499 GWELDAVEASVQTAQDLEQHCAPVPDLLAALIATVERLVATDEESASERLWRGEEGNMLA 558 Query: 586 SLFSKIIETGSCIKANAIEWID-IITRLIDGETVKPKIEK-----SSTLFILGTLESRLL 639 S ++++ + +D ++T ++ E V + + I G ESRL Sbjct: 559 SQLTELMLASEVLPPQPPVVLDGLLTAVLAPERVAMRRGGDPKSLHPRVLIWGLFESRLQ 618 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLI 698 +T+ILGGL+EGVWP P++SR M+ + L + E+ +GQAAHDF + +I Sbjct: 619 TAETVILGGLSEGVWPPVVDAGPWMSRPMRQRMGLPSPEQAVGQAAHDFFASAAAADTVI 678 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + + R P + +RWL RL +L+ + P+ Sbjct: 679 LSSARRREGAPVVPARWLTRLDAFLAGRNGYIPNHPALVWLNKLDQ--PLGPATPVAPPQ 736 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P PP+ +PR S +EI+ I DPYA+YA+ IL+L+ +P ++ D +D G + H + Sbjct: 737 PMPPVALRPRRLSVTEIETWIRDPYAIYAKHILRLEVLPELEEAADASDYGMIVHKALER 796 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 +K + + + ++ L P + W +I+ ++ EEK +S Sbjct: 797 WVKAYAVAWPENAEKKLCDLFSASLQEHVLRPALRAWWAPRLTRIARWVVQAEEKRRSEH 856 Query: 879 ---EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 I I +++I + G ADRI+L G V + DYKTG P + Sbjct: 857 GVPRAILTEIRGRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLPSAKDVWAG 916 Query: 933 IDPQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELSE 988 PQL LEAA + G F ++ R++++L Y RL + ++ S +L+E Sbjct: 917 WSPQLPLEAAMIIRGGFKEVPEHSREISDLIYWRLTGGADPGEEVVVKTREALSLTDLAE 976 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 ++ +NL+ V +QP++SH + +Y LARV EW Sbjct: 977 QTWENLLLRVAAYDQPDQPYLSHPHPGREPRFA-DYARLARVPEWNSA 1023 >gi|295687599|ref|YP_003591292.1| double-strand break repair protein Addb [Caulobacter segnis ATCC 21756] gi|295429502|gb|ADG08674.1| double-strand break repair protein AddB [Caulobacter segnis ATCC 21756] Length = 995 Score = 495 bits (1274), Expect = e-137, Method: Composition-based stats. Identities = 274/1047 (26%), Positives = 441/1047 (42%), Gaps = 81/1047 (7%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P F+I PF ++ LLN +PL P L T+ PT+R + L F+ Sbjct: 13 PRWFSIPAHRPFVDDLARGLLN-------ALEPLGPEALPRATVLTPTRRGARALADAFL 65 Query: 66 EITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + G ++ +LP I+ LGD+ E E L+ +L P +++ +R ELARL++ + L Sbjct: 66 AVGGGRALLLPQIRPLGDLDEGEPPFEPGELAIDLPPAIASRRRRFELARLVVDHGDLL- 124 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLL 183 S P + LAK L+D +D + EE ++ED L L W + Sbjct: 125 ------------SFKPGPVQTLELAKALSDFLDSCQIEEIQFEDRLDGLAEGDLAQHWQV 172 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-GSTGSIPAT 242 +A FLK + W ERL L ++ L+RA + + +++A GSTG+ PAT Sbjct: 173 SARFLKAVLRAWPERLKHLGLIDVSERRVRLLRALEKQWSENPPTEVLVAAGSTGTAPAT 232 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 A L+ VA P GA+VLPGLD + + W+ I + HPQ ++ +LLD Sbjct: 233 ADLLRVVAAAPKGAVVLPGLDEDLADSAWDRIE---------GSQGEQHPQGAMKRLLDR 283 Query: 303 LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTD-----ILENKIPNIQKCF 356 + R DV+ + + R +++++ P + + + I + Sbjct: 284 AGVARGDVRAWVPDADSRGRWRRRIVNEALRPAEATADWLAQIASLRAEAPDLDPIAEGL 343 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 ++I A E E A + A+ LR +L+ K +AL+T D+ LARRV L R+G+ D S Sbjct: 344 MGFSVIAARAEEEAAGACALLLREALETPDKTAALVTPDQTLARRVMTRLQRWGVIPDSS 403 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 AG PL+ + + + + + + + + KHPL + + Sbjct: 404 AGAPLAAAGSAILALHFARLVEEPLNPVRLLAVAKHPLVLGEDEAPAAAVLERKGL---- 459 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 L++ + D V + + + L Sbjct: 460 -RGAAPGSAEGLRARLKDTPEALALCDRVLAAVDHAASPYADGFARPCQAAKALVEALEG 518 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 LW G+ L +L + +I+ G Sbjct: 519 LIAPAR--------------------------------LWAGGAGECLGALMAALIQDGE 546 Query: 597 CIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + A+ + DI+ RL++ ETV+ L ILG +E+RL+ D L+L GL EGVWP Sbjct: 547 PLPDASPQAFADILDRLVNEETVRVGGATHPRLRILGAIEARLVRADRLVLAGLEEGVWP 606 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + +PFLSR M+S L L E+ +G AHDF A ++ R P + SRW Sbjct: 607 QGAPIDPFLSRPMRSRLGLPPPERRVGLTAHDFAQAASAPDVVLVHCERRGGAPAVESRW 666 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L RL L R LDW R LD KRP+P PP+E +PR + + I Sbjct: 667 LWRLKTLAAGAGLA--LPRRDDVLDWVRALDAPEPYSPIKRPEPRPPVEDRPRKMAVTRI 724 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + L DPYAV+AR ILKL + + + RGT H + + + + + Sbjct: 725 EALTRDPYAVWARDILKLYPLERPDEPVEARARGTAIHAAFEKFAETYPDSVPADAAAVF 784 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIES 893 ++ +PP R L + + + E + ++ KI V +++I Sbjct: 785 ERFYIEALVGAGMPPTALTRERALAREAAQWVADWERQRRAGARKIVVEAEGKLELSING 844 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 LT ADRI+ + G I DYKTG P ++ PQL+L AA L G F + Sbjct: 845 RAFTLTAKADRIEPTQDGTAHILDYKTGAAPSQKQVDTGFSPQLTLTAAILMNGGFPDLG 904 Query: 954 CRKVANLFYIRLKQKFKI-DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 L Y+R+ + + ++E + K++ L++++ + ++P+ S + Sbjct: 905 SPAPGELTYVRVTGRRPAGEEQVRALANGESEEAARKAMDGLVKLIARYDDPDEPYRSRV 964 Query: 1013 RLSEKSNIQSEYDHLARVAEWREEYDI 1039 +Y HLARV EW D Sbjct: 965 APQFVKEHPGDYAHLARVFEWSTSGDD 991 >gi|56551995|ref|YP_162834.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543569|gb|AAV89723.1| double-strand break repair protein AddB [Zymomonas mobilis subsp. mobilis ZM4] Length = 993 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 241/1055 (22%), Positives = 415/1055 (39%), Gaps = 96/1055 (9%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 +K +FTI F ++ L+ +P+ LA I +P R+I+ + Sbjct: 3 EKSRLFTIPFHRSFADALVEGLIKRY---------DDPMTLAQGLILLPNNRSIRAITEA 53 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIW 119 F+ + +LP + +GD + + L + L P + ++R L RL+ Sbjct: 54 FVRQSSSG-LLLPRMVPVGDPLLDDRLGAFLDPVDMIDPLPPAIPPLERHFRLTRLVKKV 112 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNE 175 K I A LA+ LA +D + E E L L E Sbjct: 113 MQKQGRTIA-------------VPEAHRLAEELALTLDQLMAAEIAPEQLTQLIDPLAEE 159 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--GPIIIA 233 + W + L+ W E L + + L+ A+ PII A Sbjct: 160 ELARHWQASLKLLECIITEWPEELKKTGQIESQERRNRLLDRLADRWQTQPPSEKPIIAA 219 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS--NTTYSTH 291 G+ P +ARL+ ++ +G +VLPGLD ++ W + + + + +H Sbjct: 220 GAITGSPVSARLLRVISEMEDGLVVLPGLDNNMSDEEWQLLGPHERDPDTGIKQPSLESH 279 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIP 350 PQ+ L LLD + + R++V N R I P +D +P Sbjct: 280 PQFQLKLLLDRMGVDRKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWR------SLP 333 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 ++ F ++++IE + EEA IA+ALR +++E + +AL+T DR LA RV L RFG Sbjct: 334 EKERAFPNLSVIETAHPEEEAQVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFG 393 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I+ D SAG PLS T +L L++ ++ + KHPL FG + Sbjct: 394 IDADDSAGRPLSLTPPGLLLLDLVSLAADHFSAVSFLAIAKHPLVAFGEERDLWRDHIRS 453 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L+++ RG + + + + + + QK + + W + Sbjct: 454 LDMIL-RGPLLRNGLAGITAKIKEAVDNQKADPELLAWWEKTKTP--------------- 497 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 ++ L ++ K+ + +W E G + L ++ Sbjct: 498 ------FQALDQQYQSVLPLTKIVKILRETANQIAG------EKIWAEAAGHLAADLIAE 545 Query: 591 I--IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 I + ++ ++ +L+D + V+P +FI G +E+RL + D +I Sbjct: 546 IESLAADHNEDMRFSDFAHVLRQLMDKQAVRPMTGGHPRIFIWGLIEARLQHADLMIAAS 605 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNE VWP +P+L+ ++S+L L E IG AAHDF G + ++ TR+ R+ Sbjct: 606 LNETVWPPIKEADPWLAPRIRSELGLPGLELRIGIAAHDFSSVLGAKKILLTRARRDARA 665 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 PT+ SR+ RL + W R+LD RP P PP+ +P+ Sbjct: 666 PTMPSRFWLRLEAMAANLH------HADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPK 719 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + + L +DPY+ YA IL L + +P RG+L H+I+ +K+ ++ Sbjct: 720 RIAVTRFDSLQSDPYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRIG 779 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887 + + E N +W + + +K + + V Sbjct: 780 KLKPRAL-----AFLESINAHIIQKTLWLPRLLQAIDWIEDEVQKNAAEGRTILDVEREG 834 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + I GI L GF DRID + G + I DYKTG P + QL+L ++ Sbjct: 835 RSQIN--GIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAAVRHGDMLQLALLGLLIEHN 892 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDC-------ITNDKKKYSADELSEKSLKNLIEIVTL 1000 I +V+ Y + Q K + + K ++ + + I + Sbjct: 893 GIKDI-KGQVSAFEYWSMAQDLKKKTAGYSRSVLGSGKNALLPEDFLNMAEERFIRVTND 951 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 + + PF + +K + +Y L R EWR Sbjct: 952 YLHNQTPFTARPHRGKK--LYDDYVQLMRFDEWRS 984 >gi|220921600|ref|YP_002496901.1| double-strand break repair protein AddB [Methylobacterium nodulans ORS 2060] gi|219946206|gb|ACL56598.1| double-strand break repair protein AddB [Methylobacterium nodulans ORS 2060] Length = 1037 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 303/1049 (28%), Positives = 490/1049 (46%), Gaps = 44/1049 (4%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +FTI P PF + ALL+GTL + +PL LA+VT+Y+PT+RA + L + E Sbjct: 5 RIFTIPPGVPFLATLAEALLDGTLAGDV---GRDPLGLATVTLYLPTRRATRALAAILAE 61 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIWRN 121 + +LP + LG+ E + L+PP+ ++R L LARL+ W Sbjct: 62 RC-GPAALLPRMVPLGEADEAELDLAAAPFGERQEAVLHPPIPPLERRLILARLVQAWAA 120 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + + + E P +P SPA+A+ LA +L ++D + E W+ + +Y ++ Sbjct: 121 SIDRQLLPMDAEVPFRVPSSPADAVGLAADLEGLMDALTVEGLPWDQIGQAVEAEYSRYF 180 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIP 240 L DF++IA+++W L E S PV AL+ AEA L + PI++AGSTGS+P Sbjct: 181 SLTLDFVRIAAEHWPAILAERGVSDPVARGRALVLAEAARLRRERPADPIVVAGSTGSVP 240 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ATA L++ +A P GA+VLPGLD + A W I + HPQ + +LL Sbjct: 241 ATAALIAAIAAMPRGAVVLPGLDLALDEAGWAAID-------TGEAIAHGHPQAVMHRLL 293 Query: 301 D--FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LD R V+ LG S E R+ ++S++ P +T+D +++ + + Sbjct: 294 GPGALDCGRAAVRPLGRPSPEAEARAALLSQALRPAETTDAWADLDPGHRVSLARAGGAG 353 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + ++EA +EREEA+++A ALR +L+ + +ALIT DR LARRV EL R+ I D +AG Sbjct: 354 LGIVEAADEREEALAVAAALRETLERPGRTAALITPDRTLARRVAAELKRWNIVADDTAG 413 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 PL+ + + + + + L+ HPLA+ G + RA +ALE+ LRG Sbjct: 414 QPLALSPAGRLARLAADVAALVAKPDRVLALLAHPLARLGCSRAEVVRAASALEIGVLRG 473 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 L + R+A + H P + RL+E D + A LVD + + Sbjct: 474 PAPGKGFAGLAEAL--RVARTEERPHDPRARRRLTEADWDAAADLVDRLSVAFRDFFADE 531 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + + + T + + E L LF + + + Sbjct: 532 DDA-----VRDLVGLARAHRTTCDLLLDGPD----AVEDEASVAVLDGLFDDLALAETGL 582 Query: 599 KA-NAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 A ++ T L V + L ILG LE+RLL+ D +++ GL+EGVWP Sbjct: 583 LAGRFSDYPAFFTALARERVVAERRALPHPRLRILGLLEARLLSVDRVVVAGLDEGVWPP 642 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + FL+R M+ + L E+ +GQ AHDF A G + TR+ + P + SR+L Sbjct: 643 KAETDAFLNRPMRGAVGLSPPERRLGQTAHDFVQALGCPDAVITRAHKREGSPMVPSRFL 702 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTYSFSE 774 QRL G + + + G+ + LD T+ RP P P PR+ S +E Sbjct: 703 QRLRAFMGEEAWSARVRAGERFRALAAALDRGTEPLPPRLARPAPKPDPALFPRSLSVTE 762 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 ++ L+ DPYA++AR +L LD + P +DRGT+ H+++ ++ + Sbjct: 763 VETLVRDPYAIFARHVLGLDPLEPVAVQPSASDRGTIVHDVLGGFAQRFPEALPADPLTP 822 Query: 835 MKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + + F + P + W F +++ +FL E + + + ++ + I Sbjct: 823 LLDLAVNAFAPIADAYPELYAEWWPRFERMAGAFLAWEAERRPGLARVHAETFGRWRIPI 882 Query: 894 IG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 L ADRI++ + G I D+KTG P + PQL+LEAA L+AG F Sbjct: 883 GPAEDFTLRARADRIEVTRGGGHVIVDFKTGQPPSAKEVFAGFAPQLTLEAAMLRAGGFR 942 Query: 951 QID-CRKVANLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + V +L Y+R + ++ S +L ++ + ++ GE Sbjct: 943 DLGAAAAVPDLLYVRAGGGKVPLDPVPLKPPRGEERSVADLVDEHARRFQALIARFLQGE 1002 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 F+S + + S YDHLARV EW Sbjct: 1003 AAFLSRP-YPKYARAYSAYDHLARVKEWS 1030 >gi|154247227|ref|YP_001418185.1| double-strand break repair protein AddB [Xanthobacter autotrophicus Py2] gi|154161312|gb|ABS68528.1| Double-strand break repair protein AddB [Xanthobacter autotrophicus Py2] Length = 1015 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 308/1039 (29%), Positives = 484/1039 (46%), Gaps = 34/1039 (3%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P V TI S+PF + ALL+GTLVE F +PL LA T+++PT+RA + + Sbjct: 2 PRVLTIPSSAPFLPTLATALLDGTLVEGFAPR-ADPLALAGATVFLPTRRAGRLFAEALL 60 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLS-YNLNPPVSNIQRLLELARLILIWRNKLP 124 + +G +LP I LGDV E+ ++ + R L LARL+ WR+ L Sbjct: 61 QASGGAVLLLPKIVPLGDVDEDALAFSEDAPVLAAPHAIAPVHRRLVLARLVAHWRDTLA 120 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 ++ A LA L + D + T + L L E+ ++ + Sbjct: 121 ------KAAGREAVAAGTAATFALADALGALFDDLTTAGLTVDGLDGLVPEELDRYFRVG 174 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPAT 242 DF++IA + +T+ L P + AL+ AEA L GP+I AGSTGS+PAT Sbjct: 175 LDFVRIARRAFTDYLDIAGLVEPAARRDALVDAEARRLAALGSDAGPVIAAGSTGSMPAT 234 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ARL++ +A P GA+VLPGLD + A + IT+ HPQY LA+LL Sbjct: 235 ARLLAAIAALPKGAVVLPGLDQDLDAASFARITDG-------RDAAPDHPQYGLARLLPR 287 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L + R DV L + +GR ++S+ +TSD+ + + + ++++ Sbjct: 288 LGVARGDV--LSLAAPTAFGRERLMSEVMRQAETSDLWASVSDRLPPAALGTAMAGISVV 345 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EAD+ R EA++IA+ LR SL+ + +AL+T DR+LARRV E+ RFG+ +D SAG PL+ Sbjct: 346 EADDPRAEALAIALLLRDSLEREGETAALVTPDRDLARRVAAEMARFGVALDDSAGTPLA 405 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + + L+ A + + + L+ HPLA+FG + + A ALELVALRG + Sbjct: 406 DSPAGRLAGLLVMAAAEDLAPVPLFALLTHPLAQFGLAPEAKADAVAALELVALRGPRPR 465 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 I L + A +++ + R+ E A LVD + + + P++T Sbjct: 466 AGIGGLMDAI---AAFDRDDHRGADPRRRMGEGALNRARDLVDRLDRALGPMLTLGAQ-- 520 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 G +S + +T +L G + Sbjct: 521 --RGAAPLSALVAAHRAAWVGTAGPLDIDAEDAAEAALARTFETLDG---AAGDGPALDL 575 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + D L V+P+ E + + ILG LE+RL++ D ++LG L EG WP+ +P Sbjct: 576 SAYADAAGALFADAMVRPRAEPHARIRILGPLEARLIHVDRMVLGALIEGSWPRIAETDP 635 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 +LSR M+ DL L E+ IG +AHDF G ++ T + + ++ SR++QRL + Sbjct: 636 WLSRPMRGDLGLDLPERRIGLSAHDFVQGFGAAEVVLTFAAKVGGTQSVPSRFVQRLKTV 695 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G + + RG ++ R+LD P RP P PPL +PR S +E++ + DP Sbjct: 696 AGEAEWTAARTRGARWVQAARRLDDAPAVPRATRPAPAPPLALRPRRLSVTEVETFLRDP 755 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 Y++YAR +L L + +RG+ H I + K P+ + + Sbjct: 756 YSIYARHVLGLLPLDPLDAALGGAERGSALHEAIGRFTQDHPCKLPPDALERLLEEGRRA 815 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTG 900 F P +W F + + + E + + ++ + + I G LTG Sbjct: 816 FAPLKAFPAEHALWWARFERAAGFLVAFERERRGHLDHVVAEASGSLEIPLGGGAFRLTG 875 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 ADRI++ + G ++I DYKTG P + PQL LEAA + G+F + VA+L Sbjct: 876 RADRIEVRRDGLLNILDYKTGTAPSARQVAS-LSPQLPLEAAMARRGAFPDVPAVDVADL 934 Query: 961 FYIRLKQKFKIDCITNDK-KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 Y+ LK + K +L+E +L L ++ +N Q + S L + S Sbjct: 935 LYVELKGGAAGGEEKPIRLKDSDTMDLAETALAGLESLLMAFENEAQGYRS-LAAPQWSG 993 Query: 1020 IQSEYDHLARVAEWREEYD 1038 YDHLARV EW + Sbjct: 994 TFGTYDHLARVREWALSGE 1012 >gi|167648807|ref|YP_001686470.1| double-strand break repair protein AddB [Caulobacter sp. K31] gi|167351237|gb|ABZ73972.1| double-strand break repair protein AddB [Caulobacter sp. K31] Length = 999 Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats. Identities = 285/1048 (27%), Positives = 437/1048 (41%), Gaps = 84/1048 (8%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P F+I PF ++ LL+ PL P L + T+ PT+R + L F+ Sbjct: 17 PRWFSIPAHRPFVEDLARGLLS-------ALAPLGPEALPAATVLTPTRRGARALADAFV 69 Query: 66 EITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 G K+ +LP I+ LGD+ E E LS +L P VS+ +R ELARL+ L Sbjct: 70 AAGGGKALLLPQIRPLGDLDEGEPPFEPGELSLDLPPAVSSRRRRFELARLVAEHAPLL- 128 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED--LHALKNEKYGMWWL 182 S A+ +AK LAD +D + EE +D L +L W Sbjct: 129 ------------SFQPQAGQALEMAKALADFLDSCQIEEVVADDGRLDSLAEGDLAQHWQ 176 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPA 241 ++A FLK W +RL EL ++ L+ A ++ +G ++ AGSTG+ PA Sbjct: 177 VSARFLKAVLTAWPKRLDELGLIDVSDRRVRLLNALSDQWEQNPPQGVLVAAGSTGTAPA 236 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 TARL+ +AN P GA+VLPGLD + W+ I HPQ ++ +LLD Sbjct: 237 TARLLGVIANLPQGAVVLPGLDDGLADDAWDKIA---------GVQGEQHPQGAMKRLLD 287 Query: 302 FLDIKREDVK-RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKC 355 R DV+ + R +I+++ P + + I + I + Sbjct: 288 GAGATRADVRPWWPEADSRGRWRRRLINEALRPAEATADWLAQIDRLREEAPGLDPIAEG 347 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 ++L+ E E A++ A+ LR +L+ +AL+T D+ LARRV L R+G+ D Sbjct: 348 LKGLSLVSTRTEEEAAVACALLLREALETEGLTAALVTPDQELARRVGARLMRWGVIPDS 407 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 SAG PL+ + + + + D + + + KHPL + K+ Sbjct: 408 SAGAPLAASPAAILAQHVAALAVDPLDPVRLLAVAKHPLLRADAVAARDLELKSLRGPAP 467 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + D + LV+ + P Sbjct: 468 RDAGQLLGKLKDHPDALALAERVLAAARQAAAPYVDDQAPPSVATRALVESLEALADP-- 525 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +LW G+ L+ L S +I G Sbjct: 526 -------------------------------------ADLWAGSAGECLAGLLSSLITDG 548 Query: 596 SCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + A+A+ + D++ RL++ ET++ L I G +E+R++ D LIL GL EG+W Sbjct: 549 VVLPPASALGFADLLDRLVNEETLRVGGATHPRLRIFGAIEARMVRADRLILAGLEEGIW 608 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 PKN +PFLSR M++ LNL E+ IG AHDF A +I S R P + SR Sbjct: 609 PKNAPIDPFLSRPMRAKLNLPPPERRIGLTAHDFAQAACAPDVILVHSERRGGAPAVESR 668 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 WL RL L ++ L W R LD KRP P PP+ +PR + + Sbjct: 669 WLWRLKTLARGAGLRLTER--PDVLAWVRDLDAAGLYDPIKRPAPTPPVADRPRKMAVTR 726 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 ++ L DPYAV+AR ILKL + + + RGT H + + Sbjct: 727 VEALTRDPYAVWARDILKLYPLDRPNEPVEARARGTAIHAAFETFALQHPGPVPANAAEI 786 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IE 892 + S +PP R L + + + E + ++ E+I V + I Sbjct: 787 FAGLYLSELVAAGMPPAALARERALAREAALWVADLETRRRAGAERIVVEAAGSLTFDIG 846 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +T ADRI+ G I DYKTG P K+ + PQL+L AA L+ G F I Sbjct: 847 GRPFTVTAKADRIEPTADGMAHILDYKTGAAPSKKQVETGFSPQLTLTAAILREGGFPDI 906 Query: 953 DCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 R+ +L Y+R+ + A E + K+L L E++ + +QP++S Sbjct: 907 GPREPGDLTYLRVTGRKPAGVEEVRAAAGADAQEAAIKALNGLRELIERYDDPKQPYLSR 966 Query: 1012 LRLSEKSNIQSEYDHLARVAEWREEYDI 1039 + + +Y HLARV EW D Sbjct: 967 VAPQFVHDHVGDYGHLARVFEWSTSGDD 994 >gi|170738833|ref|YP_001767488.1| double-strand break repair protein AddB [Methylobacterium sp. 4-46] gi|168193107|gb|ACA15054.1| double-strand break repair protein AddB [Methylobacterium sp. 4-46] Length = 1040 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 299/1046 (28%), Positives = 471/1046 (45%), Gaps = 35/1046 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +FTI P +PF + ALL+GTLV PL LA+VT+++PT+RA + L +E + Sbjct: 5 RIFTIPPGAPFLATLADALLDGTLV---GPVAQGPLGLAAVTLFLPTRRATRALAAE-LA 60 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-----PPVSNIQRLLELARLILIWRN 121 + +LP + LG+ E + L PP+ ++R L LARL+ W Sbjct: 61 ARCGPAVLLPRMTPLGEADEAELDLAALAPGECPEAVAHPPIPALERRLILARLVQAWAA 120 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + + + E P +P SPA+A+ LA +L ++D + E W+++ +Y ++ Sbjct: 121 GIDRRLLPMGEEVPFRVPSSPADAVGLAADLEGLMDALTVEGLPWDEIGRAVEAEYSQYF 180 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSIP 240 L DF++IA+++W L E S PV AL+ AEA L + PI++AGSTGSIP Sbjct: 181 SLTLDFVRIAAEHWPAILAERGVSDPVARGRALVLAEAARLRRERPADPIVVAGSTGSIP 240 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ATA L+ +A P GA+VLPGLD + W I + HPQ L +LL Sbjct: 241 ATAALIGAIAAMPRGAVVLPGLDLALDEEGWAAIE-------TGEAVAHGHPQAILHRLL 293 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 LD R V+ LG R+ ++S++ P +T+D + + + +A Sbjct: 294 RGLDCPRAAVRPLGAPGPAARARAELLSQALRPAETTDAWADLDPGAREALARAGGAGLA 353 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 L+EA +EREEA++IA+ALR +L+ ++ALIT DR LARRV EL R+ I + +AG P Sbjct: 354 LVEAADEREEALAIAVALREALERPDCRAALITPDRGLARRVAAELGRWEIVAEDTAGQP 413 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ +L + + + L+ HP+ + G L RA ALE+ LRG Sbjct: 414 LALSLAGRLARLATDVAALDAKPERVLALLAHPMVRLGLARPALERAAAALEIGVLRGPA 473 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + L + R+A H P RL++ D E A LV + + Sbjct: 474 PAKGFAGLAEAL--RVARGGERPHAPRPVRRLTQADWEAAADLVARLDRAFRDFAPRDFA 531 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + G + + + + ++ Sbjct: 532 PDQEEGVRDLVALAQAHRETCDLLLDGPDAPQDEPSVAVLDGLFD---DLALAQAGMLEG 588 Query: 601 NAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ T L V + E L ILG LE+RLL D ++LGGL+EGVWP Sbjct: 589 RFSDYPAFFTALARERVVSARAERPHPRLRILGLLEARLLRVDRVVLGGLDEGVWPPKAE 648 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+R M++ + L + E+ +GQ AHD A G + TR+ + PT+ SR+LQRL Sbjct: 649 TDAFLNRPMRAAVGLSSPERRLGQTAHDLVQALGCPDAVITRAHKREGSPTVPSRFLQRL 708 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--YSFSEIKQ 777 G + G LD T+ + +P P + S +E++ Sbjct: 709 RAFMGEAAWSGCLAAGGRLRALAASLDRGTEPLPPRPARPAPRPDPALFPRALSVTEVET 768 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L+ DPY ++AR +L LD + P +DRGT+ H+++ ++ + + Sbjct: 769 LVRDPYGIFARHVLGLDPLEPVAVQPSASDRGTIVHDVLGGFAQRFPEALPADPRLPLYD 828 Query: 838 IIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895 + + F + P + W F +++ SFL E + + + ++ I + I Sbjct: 829 LAVNAFAPIADAYPELYAEWWPRFERMAASFLAWEVERRPGLRRVHAEISGRWRIPIGPA 888 Query: 896 --IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 L ADRI+ + G I D+KTG P PQL+LEAA L+AG F + Sbjct: 889 EDFTLRARADRIEARRDGGHVIVDFKTGQPPSAREVFAGFAPQLTLEAAMLQAGGFRDLG 948 Query: 954 CRKVA-NLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 A L Y+R + + S +EL ++ + +V GE + Sbjct: 949 PGTGAPELLYVRASGGKVPLDPVPLKPPRGEARSVEELIDEHARRFQGLVARFLRGEAAY 1008 Query: 1009 ISHLRLSEKSNIQSEYDHLARVAEWR 1034 +S + + S YDHLARV EW Sbjct: 1009 LSRP-YPKYARAFSPYDHLARVKEWS 1033 >gi|85708410|ref|ZP_01039476.1| helicase [Erythrobacter sp. NAP1] gi|85689944|gb|EAQ29947.1| helicase [Erythrobacter sp. NAP1] Length = 1012 Score = 485 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 259/1062 (24%), Positives = 421/1062 (39%), Gaps = 104/1062 (9%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 KP V++IA F ++ L+ E F LA VT+ VP+ RA + + F Sbjct: 10 KPKVYSIAAHRGFADALVAGLVPRYEEEGFG--------LARVTLLVPSSRAARTMSEAF 61 Query: 65 IEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLELARLILI 118 I G + ++P + ++GD+ ++ LL ++ P V +RLLELA+L+ Sbjct: 62 IRWCGENDRAGMLMPRMVTVGDLDLDESLGALLDPLGASDIPPAVEPTRRLLELAQLVEE 121 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---- 174 R L P+ A + LA +A +D + E+K+ EDL + Sbjct: 122 ERADLG------------KPPLPGAARMRLASEIARTMDRLLVEDKEPEDLTSDAVLDML 169 Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIA 233 W + W RL E + L ++ + + PII A Sbjct: 170 GDLSDHWKDSLRLFARVQARWRSRLDENGEVDAATRRNLLFERASKRWREIPPETPIIAA 229 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289 G T + PA AR++ +A+ P GA++LP LD + W+ + + Sbjct: 230 GVTSASPALARMLRVIAHLPCGAVILPDLDLSLGDEAWDELGRAGATPEPGGEVFGQSDA 289 Query: 290 -THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 THPQY L LL+ + I R +V+ ++ RS IS FLPP S Sbjct: 290 LTHPQYHLKLLLERMGIARAEVRAWHRSGMTAADPARSHAISSLFLPPKASRSWV----- 344 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 ++ ++ S V L+ + EEA +IA+ +R +L+E K+ A++TADR+LARRV L Sbjct: 345 -ELGPEKRRLSGVKLMTSATSEEEAQAIALLVREALEEPAKRIAVVTADRSLARRVTQHL 403 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R+ I D SAG LS T +L L + + + L+ HPL + R Sbjct: 404 ERWSIMADDSAGRALSLTPAGRLLGLLADIMSHGLAPAGLVALIAHPLV--KRGDGEARR 461 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 R + + L + + Sbjct: 462 QWLRNVRKFDRALRGPSPAPGFEPLRQIAREAGVS--------------------EWFEE 501 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + ++PLV ++ + +W E+G+ LS Sbjct: 502 VEEILSPLVDLPETITLAQSLDMLASSAERLAA-------------EAVWAAEDGRALSR 548 Query: 587 LFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L + I + + I+ +D V+P + ILG LESR+ D + Sbjct: 549 LLEDLRLHAREIATTVSPSDIASILRDRMDEVAVRPPYGGHPRVAILGLLESRMARADLV 608 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 I GGLNEG WP+ + L+ + L + AE IG AAHD A G ++ +RS R Sbjct: 609 ICGGLNEGSWPQAPGSDALLAPGVLRALGVPGAEFRIGLAAHDLAGAMGAPEVVLSRSQR 668 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + PT+ SR++ R+ L G + +KR L P Y RP+P P + Sbjct: 669 DAEGPTLPSRFVLRVEALLGELAGRHREKRTPAMLPLLD--REPEPAPAYPRPQPTPTAD 726 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGTLFHNIITELIKK 822 + S + + +L+ DPY YA+ IL L + DP D RGTL H+I+ K Sbjct: 727 QRKVRISATALDRLLGDPYQFYAQEILGLRRLDPLAADPFGDPALRGTLVHDILDAWHKA 786 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKI 881 R T EI + F + + P +W+ F + ++ + + Sbjct: 787 REAHPTLEIA----PFAERMFAEAKVHPLFKGLWQPRLVAAMERFEQWVDDAAKDGRTVL 842 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +M+++ I + +G ADRID L G + + DYKTG + Q+ + Sbjct: 843 VTETRGEMSVDGIPV--SGRADRIDRLGDGRLVVVDYKTGGPASASQVEAGYALQMGILG 900 Query: 942 AALKAGSFS-QIDCRKVANLFYIRLKQKFK---------IDCITNDKKKYSADELSEKSL 991 + G+F +VA Y L + +T +K + +E + Sbjct: 901 LIARDGAFEKGKLSGEVATYEYWSLGRSKDDGEFGYQTVPLKMTPRQKGLTPEEFLPRHE 960 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 + L ++ G+ PF + S+YD L R+ EW Sbjct: 961 EFLNTAISKYLLGDAPFTAKENP--DYLGYSDYDQLMRLEEW 1000 >gi|294011635|ref|YP_003545095.1| putative helicase [Sphingobium japonicum UT26S] gi|292674965|dbj|BAI96483.1| putative helicase [Sphingobium japonicum UT26S] Length = 992 Score = 479 bits (1232), Expect = e-132, Method: Composition-based stats. Identities = 257/1054 (24%), Positives = 420/1054 (39%), Gaps = 88/1054 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P +F I F ++ +L +P+ LA I +P RAI+ + F Sbjct: 6 RPALFNIPAHRAFSDALVTGVLTQH--------GDDPMRLAQGMILLPNNRAIRSVSDAF 57 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-----LNPPVSNIQRLLELARLILIW 119 + +G +LP + +LGD + L + P ++ ++R + LAR++ Sbjct: 58 VRKSGGG-LLLPRLVALGDPDLGEQVGGALDPLGEDDDPIPPAIAPMRRQMILARMVQQA 116 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YG 178 P+ A+ LA+ L ++D I+ E L L Sbjct: 117 SA----------------HPVDAGQALKLAQALGAVLDQIQVERLSVAALADLTLSDELS 160 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237 W + I W + L L + L+ A +G +I+AG + Sbjct: 161 RHWQTSLKLFGILLAQWPQELSRLGCIDLADRRNRLLERVAARWAKAPPEGFVIVAGMST 220 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYS 295 + PA A L+ +A P GA+V GLD + W+ I + + THPQY+ Sbjct: 221 TAPAIAGLLRRIALMPKGAVVFAGLDQEMDRDAWDAIGPFDADPLTGRAPAGHETHPQYA 280 Query: 296 LAKLLDFLDIKREDV--KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L +LLD + R+DV R G+ + R IS + LPP + + Sbjct: 281 LKRLLDRMSATRDDVALWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTAD 334 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + + V +E EEA +IAIALR +++ + +AL+T DR LA RV L R+GI Sbjct: 335 RSLAGVEALEVATPGEEAQAIAIALREAVETPGRTAALVTPDRQLATRVSAHLRRWGIEA 394 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D SAG+PLS ++L ++ A+ + +A+ TL+KHPL G L+L Sbjct: 395 DDSAGLPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEERLGWLEGVRGLDL 454 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + RG + I+ L L+ +R + + L + P Sbjct: 455 LL-RGPRPQAGIVGLDLLLAERDGEDR------------QCVLRGRTRLWWAEARALLEP 501 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L L+ D ++ H + L + + Sbjct: 502 LEQAF---------LAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFAEMEEAAS 552 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 G +A+ + L+ G +V+P + ILG +E+RL+ D +ILGGLNEG Sbjct: 553 EGP-RQADIRALPALFDHLLGGVSVRPPQGGHPRIAILGLIEARLVQTDLIILGGLNEGT 611 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP A +P+L+ ++ ++ L E IG AAHDF A G ++ TR+ R + P +AS Sbjct: 612 WPGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQILITRARRGSGGPAVAS 671 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 R+ RL + G K Y + +D+ + RP P PPL +P+ + Sbjct: 672 RFWLRLKAMAGPQ-----WKSAGRYAALAQAIDHAAEHRPAGRPAPVPPLSVRPKVIPVT 726 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 ++ +L DPYA YARRIL+L + D RGT H I+ + + Sbjct: 727 DVDRLKADPYAFYARRILRLARLDPVDADAGPAWRGTAVHEILQQWAEAGSGDLAD---- 782 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIE 892 ++ + F++ ++ P + +W+ + ++ + V I + I Sbjct: 783 -LEARARAMFDRPDVHPLLKALWQPRLIEAIRWIAAEVASDLAAGRKILAVEIEGRAEIA 841 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 G+ LTG ADRIDLL G + I DYKTG P + QL L + F Sbjct: 842 --GVTLTGKADRIDLLPDGKLGIVDYKTGKPPSARQVKAGYALQLGLLGLIAEHDGFPGT 899 Query: 953 DCRKVA-NLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 VA Y L +K + K + + + ++ G Sbjct: 900 HPAPVAGGFEYWSLAKKGDSFGYRESPVDPLGKRDKIVTADFTSQVYSQFEDVAAAWLTG 959 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + PF + + + +YD L R+ EW D Sbjct: 960 QAPFDAQVNP--EVANYGDYDQLMRLEEWYGRDD 991 >gi|114568639|ref|YP_755319.1| hypothetical protein Mmar10_0085 [Maricaulis maris MCS10] gi|114339101|gb|ABI64381.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 1016 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 269/1057 (25%), Positives = 435/1057 (41%), Gaps = 72/1057 (6%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P ++TI P + F R + L +P L + I PT+RA + L Sbjct: 8 TSGPCLYTIPPQADFLRVLATTLREEFDAAG------DPDALTRLLILTPTRRAAKALGD 61 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN-PPVSNIQRLLELARLILIWRN 121 F E+ G +LP+I+ +GDV + + L P +S +R ELARLI Sbjct: 62 VFAELAGNGVALLPLIRPIGDVDVDDPPFEPGELAGLAAPAISIERRRYELARLI----- 116 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK-KWEDLHALKNEKYGMW 180 L E+ L P+ A+ L+ +LA ++D + TE+ DL Sbjct: 117 --------LAKEAALGRPLGVGGALALSDSLAALLDDLATEDVSDLSDLQDAVTTYLPAD 168 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSI 239 A +F+ I + W RL EL + + ++ K P++ GSTGSI Sbjct: 169 RREAVEFIDIVQRVWPARLAELGLTDAAARRSLILHELVARWTKQPPDHPVLAVGSTGSI 228 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PA +LM +AN P GA+VLPG D + W++I + HPQ+++ L Sbjct: 229 PAARKLMKVIANLPQGAVVLPGFDWDADASAWDSIKD-------------DHPQWAMKTL 275 Query: 300 LDFLDIKREDVKRLGNVSNEM--YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ---- 353 +D L + R + + + R +I+++ P DT+D I E + Sbjct: 276 VDELGVDRLQMPSWPGAAEDSLAERRRRLIAEALRPADTTDEWLKRIGELQGRFGDSFFN 335 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + ++L+E +E EA + A+ LR L+ + + L+T DR LARRV E+TRFG+ + Sbjct: 336 DGMTGLSLVETADEISEARACALMLREVLETPDRTAILVTPDRMLARRVSAEMTRFGVRL 395 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D S G L+ T+ + LT LL+ +A+ L PL + G E Sbjct: 396 DDSGGAALAETMAGAFLTRLLDVALDCGRVVALTALWGSPLFRAGHRRGQTHTVLAKFEA 455 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ALRG + D+ +++ + + + ED+ ++D + + Sbjct: 456 EALRGARPGRDLAAVRARLDGQYVRLFD-------------EDRATINAILDQLDTSLAG 502 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L+T S D +W E G+ + L ++E Sbjct: 503 LLTPGKRSASAWARAHAE-------AAEALASDDSGSGAQAVWVGEGGEAAAGLLRSLLE 555 Query: 594 TGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + + E+ + V P++ L +LG LE+RL+ D +IL GLNEG Sbjct: 556 ESESLPDMSLPEYAAAFGEMCRSRRVAPRLGVHPRLQVLGPLEARLITADRVILAGLNEG 615 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 VWP +P+LS M+ + L E+ G AAHDF +I TRS + PT+A Sbjct: 616 VWPPGPGADPWLSPGMRRTVGLGAPERRYGLAAHDFAQLAAAPDVIMTRSGKSEGSPTVA 675 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769 SRWL RL L + D+ R P P Sbjct: 676 SRWLWRLKTLARGALGAAAEAAFAPETDYAALSRRLDDPGAPPRAAPRPQPAPPVPVRPR 735 Query: 770 -YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S +EI+ + DPY++YAR +L L + PD +RG+ H+ + ++ + Sbjct: 736 QMSITEIRTWVRDPYSIYARHVLGLRRLDPADMPPDARERGSALHDALEAVVPAWSDGIP 795 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-VNIPA 887 + + + + P ++ R F + + + E + ++ + V I Sbjct: 796 EDAVKQLVAHAELKLAEAGFGPEEMVLERARFERAASWLVGWEAERRARGIHLDKVEIFG 855 Query: 888 KMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 M E LTG +DR D G +DI DYKTG + ++ + DPQL L AA Sbjct: 856 SMPFEGPAGPWTLTGRSDRFDRHPDGRLDIIDYKTGGSASAKSIKAGFDPQLPLTAAMAA 915 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD--ELSEKSLKNLIEIVTLLQN 1003 AG+F ++ + A L+YI L + D E +L +L + + Sbjct: 916 AGAFEALEAGEAAGLYYISLPGNAGGGKEVRIDGGRNPDVASYVEGALTDLTGWIARFDD 975 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040 P+ S +R + +N ++DHLAR EW + S Sbjct: 976 ETTPYESQIRA-QYTNDYGDFDHLARRGEWGSAAEGS 1011 >gi|94496378|ref|ZP_01302955.1| helicase [Sphingomonas sp. SKA58] gi|94424124|gb|EAT09148.1| helicase [Sphingomonas sp. SKA58] Length = 989 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 248/1053 (23%), Positives = 413/1053 (39%), Gaps = 89/1053 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P +FTI F ++ LL + + LA + +P RAI+ +R F Sbjct: 6 RPALFTIPAHRAFADALVTGLLAQH--------RGDVMALAQAMVLLPNNRAIRAVRDAF 57 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWR 120 + +G +LP + ++GD + L + P + ++R + LAR++ R Sbjct: 58 VRQSGGG-LLLPRLVAIGDPDLGEQVGGALDPLGEEEPIPPAIDPMRRQMLLARMVQDVR 116 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGM 179 + A+ L + L ++D ++ E L + + Sbjct: 117 -----------------PEVDAGQALQLGQALGTVLDQMQVERISPRALRDIDLSADLSR 159 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238 W ++ +I W L + + L GP++ AG + + Sbjct: 160 HWQVSLTLFEILITRWPAELARIGCIDLADRRNRLFDRLTARWALHPPSGPVVAAGISTT 219 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS--SNTTYSTHPQYSL 296 PA ARL+ +A PNG +V GLD H+ W+ I + + + +HPQY+L Sbjct: 220 APAIARLLRCIAETPNGMVVFAGLDQHMDADAWDAIGPFDPDPATGQRVPGHESHPQYAL 279 Query: 297 AKLLDFLDIKRED--VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 +LLD + R+D R G+ + R IS + LPP + + + Sbjct: 280 KQLLDRMSATRDDVAQWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTADR 333 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 + V +E EEA +IAIALR L+ + +AL+T DR LA RV L R+GI+ D Sbjct: 334 SLAGVEALEVATPGEEAQAIAIALREVLETPARTAALVTPDRQLATRVSAHLRRWGIDAD 393 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 SAG PLS ++L ++ A+ + + + TL+KHPL G L+L+ Sbjct: 394 DSAGQPLSRLPPGTLLIAMAQAVAERFAPVPLLTLLKHPLVMRGDARIAWLDGVRGLDLL 453 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 RG + + + ++ R ++ + A L++ + Sbjct: 454 L-RGPRPQAGLHGIDLVLRARDDDRQRTLRDQVRAWWPT------ARALLEPLETAFATT 506 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + S+ + + D + + Sbjct: 507 TGLAGQLAALREAASLLSAEAIWAGHHGHAAADLFADM-----------------ESAAP 549 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 +A+A ++ ++ G +V+P L ILG +E+RL D +ILGGLNEGVW Sbjct: 550 EGPRQADARALPALLDDMLSGLSVRPPQGGHPRLSILGLIEARLTQADVMILGGLNEGVW 609 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P A +P+L+ ++ DL L E IG AAHDF A G ++ TR+ R + P +ASR Sbjct: 610 PGLPAPDPWLAPRIRRDLGLPGLETRIGLAAHDFAGALGAPRVLITRARRGSGGPAVASR 669 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 RL + G K Y R +D +RP P PP+ +P ++ Sbjct: 670 LWLRLKAMAGPQ-----WKTADRYAAMARAIDAPLVYGPTRRPAPSPPIAVRPHVIPVTD 724 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 + +L DP+A YARRIL+L + D RGT H ++ + T Sbjct: 725 VDRLKADPFAFYARRILRLARLDPVDADAGPAWRGTAVHEVLQRWAEAGTLDPTD----- 779 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES 893 ++ + F++ + P + +W+ + + +S I V + + Sbjct: 780 LEVRARAMFDQPEVHPLLKALWQPRLIESIRWIAAEVARDKSEGRTIISVEQEGRADVA- 838 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 G+ L G ADR+D L G + I DYKTG P + QL L + G F + Sbjct: 839 -GVTLMGKADRLDRLADGRIGIIDYKTGKPPSARQVKAGFSLQLGLLGVIAEMGGFDGLG 897 Query: 954 CRKVAN-LFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 VA Y L +K + K E + + + + G Sbjct: 898 PAPVAGDFEYWSLAKKGDQFGYRERPVDPLGKRDKIITQEFTAHAHAHFEGLANDYLLGS 957 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 PF++ L + +YD L R+ EW D Sbjct: 958 APFVAQLNP--EVANYGDYDQLMRLEEWYGRDD 988 >gi|58039097|ref|YP_191061.1| hypothetical protein GOX0628 [Gluconobacter oxydans 621H] gi|58001511|gb|AAW60405.1| Hypothetical protein GOX0628 [Gluconobacter oxydans 621H] Length = 1016 Score = 476 bits (1224), Expect = e-131, Method: Composition-based stats. Identities = 264/1055 (25%), Positives = 438/1055 (41%), Gaps = 75/1055 (7%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V TIA + PF + L I VP++RA + L F+ + Sbjct: 4 VVTIAGTEPFLDRVAQEWLKRDPAAGTDGPG---------LILVPSRRAGRALMEAFLRV 54 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 ++ +LP I ++ DV E+ A + + L P V +RL L+ LIL Sbjct: 55 LDTQAALLPRIVAINDVDEDAL-ASIGIDVVLPPAVEPQRRLAVLSMLILQTP------- 106 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186 + A LAK LAD++D E E L E++ W Sbjct: 107 ---LVSVGVDSTKGIDRAWPLAKALADLMDEAERSGVDLAERLPDAVEERFSDHWQQTLK 163 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARL 245 FL+I + W + L E S+PV QIA ++A+A+ K P+ G A + + Sbjct: 164 FLEIVTAVWPKWLEEEGLSNPVARQIARLKAQAQAWAEKPPLTPVWGVGFADGSAAVSDV 223 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 ++ VA P G ++LPG+D + IW + +HPQ L ++L L + Sbjct: 224 LAVVARLPAGLVILPGVDLGMTDEIWADLPP-------------SHPQAGLKEILTDLGL 270 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 R+++ + GR +++ + LP + D + ++++ A Sbjct: 271 SRKELTDWDGGRDR--GRELMLREVLLPEHGIEHWGQDSR-------PRDIDGLSILPAQ 321 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 ++++EA +IA+ LR + E K AL+T DR LA+RV EL RFGI+ D SAG LS T Sbjct: 322 DQQQEAQAIALILRDVVSEAGKTCALVTPDRALAQRVGTELLRFGIHADDSAGESLSQTP 381 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L + A +A+ +++KHPLA G + LE + LRG + I Sbjct: 382 AAVFLRLIATAAEARLSPVALLSVLKHPLAALGRTPGDCHASARRLERLLLRGPAPAPGI 441 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 LK+ + + H S + ++ E + I Q PL++ + Sbjct: 442 AGLKAALH---EYTQKKHAPDHGASADAPDEPEGPAAFIARIEQAFDPLLSIEGAIPLPE 498 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKL---PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + + + E LW E+G+ LS + +I + Sbjct: 499 LLERLIHTAEALAATAEELDAPEDEPRHPGARLWLGEDGEALSRHLAALIVNTGILPPQR 558 Query: 603 IEWID------IITRLIDGETVKPKIE--KSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + +D + +++ G + ILG LE+RLL FD ++LGGLNEGVW Sbjct: 559 LTHLDSFLNTSMAGQMLTGLRAHRGGVELAHPRVSILGVLEARLLAFDVVVLGGLNEGVW 618 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIAS 713 P T P+LSR M+ + L + E+ G +AHDF ++ ++ S R P + + Sbjct: 619 PPATDPGPWLSRPMRVRVGLPSPERQTGVSAHDFVSTILASKEAVFASSARREGAPGVPA 678 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKPFPPLEAQPRTYSF 772 RW+ R+ G LDW R LD P+P PP+ +PR S Sbjct: 679 RWMVRMDAFLGGRSQSLPL---HPALDWQRCLDQPLAGAEAVAPPEPRPPVALRPRGLSI 735 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 +EI+ ++DPYA+YA+ +LKL + ++ + D G + H+ + ++ + + Sbjct: 736 TEIETWMHDPYAIYAKHVLKLRALKPLEEGAEHADFGMIVHDAMERVLSDFPERWPANAS 795 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--------SSIEKIFVN 884 +++++ K N+ P + W +I+ E E + + + V Sbjct: 796 AILRRVFAEELAKANMRPALVNWWGPRLARIADWVAEKEAAYRLDMEESGPAQGRFVEVT 855 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 ++ L G ADRID+ G + DYKTG P + + QL LE A L Sbjct: 856 ASFRLQAAFAPFELRGRADRIDIGADGLATVFDYKTGQPPSGKNVAEGWSVQLVLEGALL 915 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKID---CITNDKKKYSADELSEKSLKNLIEIVTLL 1001 G+F + + L Y L + + A L ++++ L +V Sbjct: 916 AKGAFKDVPAVETKKLLYWHLTGGDDPGKESEVPGSRSGTDAPTLIGEAMEKLRTLVDEY 975 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 N +QP+ S ++Y LARV EWR Sbjct: 976 DNPDQPYRSQPWAGHVPR-YTDYAQLARVDEWRAA 1009 >gi|83859062|ref|ZP_00952583.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii HTCC2633] gi|83852509|gb|EAP90362.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii HTCC2633] Length = 1017 Score = 475 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 288/1057 (27%), Positives = 458/1057 (43%), Gaps = 80/1057 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P VFT+ P++PF E+ L +P L+ VT+ +PT+RA +EL Sbjct: 8 SSPSPRVFTLPPAAPFLTELARGLTEAF---------PDPEALSRVTVLIPTRRAGRELA 58 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-PVSNIQRLLELARLILIWR 120 F ++ + +LP+I+ +GDV ++ + + P VS +R ELA LIL Sbjct: 59 EAFTRLSPG-AALLPMIRPIGDVDADEPPFEPGELAEIAPEAVSPARRRFELASLILQKE 117 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGM 179 + + + + + TE+ L Sbjct: 118 KAVGRSMGAGGALALADDLARLLDDLA-------------TEDVDDLGALTEEIRANLPA 164 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238 AA FL I W ERL E+ P + L++A A+ P+I AGSTGS Sbjct: 165 HMQEAAMFLDIVLVAWPERLKEMQRVDPARRRSLLLKALAKRWRDNPPADPVIAAGSTGS 224 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 IPA A L+S VAN P G IVLPG + W I + HPQ ++ Sbjct: 225 IPAAAALLSAVANLPQGCIVLPGFARDMDEEGWAAIDD-------------GHPQRAMKT 271 Query: 299 LLDFLDIKREDVKRLGNVS--NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK-- 354 L++ L I+R DV+ + R+ VI+++ P + + + + K + Sbjct: 272 LIESLGIERHDVRFWPGAEEGRQDAPRARVIAEALRPAEATADWLRRVEDLKEAWGEDVF 331 Query: 355 --CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 +++I+A EEA +IA+ LR +L+ + L+T DRNL+RRV E+ RFG+ Sbjct: 332 ETALEGLSVIDAPAPAEEARAIALMLRETLETPGARGILVTPDRNLSRRVITEMARFGVT 391 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 +D SAG PLS T + L +L A +A + L PL G L +E Sbjct: 392 VDDSAGQPLSDTPSGAFLIRVLQAALDPGSALAFSALATSPLFSLGEERAPLRGVLGTME 451 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 ALRG + +D L V D ++ I Sbjct: 452 RRALRGRRPGHDWDALYEHVRDAAGDDEDRR---------------------RRWGGIIE 490 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKI 591 + T + ++ G+ ++ WT+ V + + DE LW + G+ + L + Sbjct: 491 AMATALSPLSALEGDQPLAVWTRALVESAEALARNDEMAGADRLWATDAGENAAQLMREF 550 Query: 592 IETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +E + + ++ + ++P+ L ILG LE+RL D +IL GLN Sbjct: 551 MEEADALPPVSLHDFTRAVLETARSRLIRPRYGAHPRLQILGPLEARLAEADRVILAGLN 610 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EGVWP +PFLSR M+ L E+ G AAHDF R + TRS + + PT Sbjct: 611 EGVWPAPPKSDPFLSRGMRIAAGLSAPEERFGLAAHDFAQLACARDVTLTRSAKVDGAPT 670 Query: 711 IASRWLQRLLVLGGT---DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 +ASRWL RL L + Q YL + LD T +Q + P+P PP+EA+P Sbjct: 671 VASRWLWRLQTLARGALGERAQAALAPAQDYLGFANALDETAEQTMIRPPEPAPPVEARP 730 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826 R S ++I+ I DPY+++AR+ILKLD + + +RGT +H + ++ + Sbjct: 731 RKLSVTQIETWIRDPYSIFARKILKLDKLDPLDRPAGAPERGTAYHAALERWVRSLGDTE 790 Query: 827 -NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVN 884 + + + + + + F +++ + EE + + Sbjct: 791 ILPRDALQRLLAHGQTALSEAGFSENALGVEMKRFERVAQFMVAFEEARREDGFTPAALE 850 Query: 885 IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ ++ G LTG ADRIDL SG +DI DYKTG P + PQL LEAA Sbjct: 851 ALGDISFDAPGGLFTLTGRADRIDLRPSGALDILDYKTGMPPSAKEVAAGFAPQLPLEAA 910 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 G+F + +L Y+RL + + + A L+E++L+ L++ V Sbjct: 911 MAARGAFEHAPSHEPGDLMYVRLSGGRVPGEPRSMVRNPDGDDAGMLAEQALERLMKWVA 970 Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 + ++ + S R+ + +N +YDHLAR EW Sbjct: 971 AFDDPQRTYPSQPRV-KFTNKWGDYDHLARRKEWASA 1006 >gi|307292810|ref|ZP_07572656.1| double-strand break repair protein AddB [Sphingobium chlorophenolicum L-1] gi|306880876|gb|EFN12092.1| double-strand break repair protein AddB [Sphingobium chlorophenolicum L-1] Length = 991 Score = 472 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 256/1052 (24%), Positives = 420/1052 (39%), Gaps = 85/1052 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P +F I F ++ +L +P+ LA I +P RAI+ + F Sbjct: 6 RPALFNIPAHRAFSDALVAGVLAQH--------GDDPMRLAQGMILLPNNRAIRSVSDAF 57 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWR 120 + +G +LP + +LGD + L + P ++ ++R + LAR++ Sbjct: 58 VRKSGGG-LLLPRLVALGDPDLGEQVGGALDPLGEDEAVPPAIAPMRRQMILARMVQQAS 116 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGM 179 P+ A+ LA+ L ++D I+ E L L Sbjct: 117 A----------------HPVDAGQALKLAQALGAVLDQIQVERVSVAALADLTLSDELSQ 160 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238 W + I W + L L + L+ A +G +I AG + + Sbjct: 161 HWQTSLRLFGILLAQWPQELARLGYIDLADRRNRLLDRVAARWAKAPPEGFVIAAGMSAT 220 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSL 296 PA A L+ +A P GA+V GLD + W I + + THPQY+L Sbjct: 221 APAIAGLLRRIALLPKGAVVFAGLDQEMDGDAWEAIGPFDADPLTGRAPAGHETHPQYAL 280 Query: 297 AKLLDFLDIKREDV--KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 +LLD + R+DV R G+ + R IS + LPP + + + Sbjct: 281 KRLLDRMSATRDDVALWRWGSEHDARAVRGRNISNAMLPPRLTSRWR------DLKTADR 334 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 + V +E EEA +IAIALR +++ + +AL+T DR LA RV L R+GI+ D Sbjct: 335 SLAGVEALEVATPGEEAQAIAIALREAVETPGRTAALVTPDRQLATRVSAHLRRWGIDAD 394 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 SAG PLS ++L ++ A+ + +A+ TL+KHPL G L+L+ Sbjct: 395 DSAGQPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEERLGWLEGVRGLDLL 454 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 RG + I+ L L+ +R + + L + PL Sbjct: 455 L-RGPRPQAGIVGLDLLLAEREGEDR------------QRVLRARTRLWWAEARALLEPL 501 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 L+ D ++ H + L + + Sbjct: 502 EQAF---------LAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFAEMEEAASE 552 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 G +A+ + L+ G +V+P + ILG +E+RL+ D +ILGGLNEG W Sbjct: 553 GP-RQADIRALPALFDHLLGGVSVRPPQGGHPRIAILGLIEARLVQTDLMILGGLNEGTW 611 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 P A +P+L+ ++ ++ L E IG AAHDF A G ++ TR+ R + P +ASR Sbjct: 612 PGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQILITRARRGSGGPAVASR 671 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + RL + G K + + +D+ + RP P PPL +P+ ++ Sbjct: 672 FWLRLKAMAGPQ-----WKSADRHAALAQAIDHAAEHRPASRPAPVPPLSVRPKVIPVTD 726 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 + +L DPYA YA+RIL+L + D RGT H I+ + + + T Sbjct: 727 VDRLKADPYAFYAKRILRLARLDPVDADAGPAWRGTAVHEILQQWAEAGSSDLTD----- 781 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 ++ + F++ ++ P + +W+ + ++ KI + + + Sbjct: 782 LEARARAMFDRPDVHPLLKALWQPRLIEAIRWIAAEVASDLAAGRKILS-VEIEGRADIA 840 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 G+ LTG ADRIDLL G + I DYKTG P + QL L + F Sbjct: 841 GVTLTGKADRIDLLPDGKLGIVDYKTGKPPSARQVKAGYALQLGLLGLIAEHDGFPGTHA 900 Query: 955 RKVA-NLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 VA Y L +K + K + + + ++V G Sbjct: 901 APVAGGFEYWSLAKKGDAFGYRESPVDSMGKRDKIITADFTSQVYAQFEDMVAAWLTGSA 960 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 PF + + + +YD L R+ EW D Sbjct: 961 PFDAQVNP--EVANYGDYDQLMRLEEWYGRDD 990 >gi|330991805|ref|ZP_08315754.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1] gi|329760826|gb|EGG77321.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1] Length = 1016 Score = 469 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 257/1052 (24%), Positives = 424/1052 (40%), Gaps = 72/1052 (6%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V + P PF ++ L+ +P + I +P++RA + L F+ Sbjct: 13 RVAVVPPHVPFVDQIAARWLD--------QAGHDPRECGTGLILLPSRRAARALTEAFMR 64 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 + +LP I + + E + +L P V ++RL L+ L++ D+ Sbjct: 65 QVDGRPLLLPRIAPIAALDEASLALSGQNALDLPPAVDPVRRLATLSLLVMQAGKAFGDV 124 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMWWLLAA 185 A LA+ LAD++D E E L + W Sbjct: 125 Q-------------GVDQAWPLARALADLMDEAEWAECDLRTRLPHAAEGDFAQHWHQTL 171 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---GPIIIAGSTGSIPAT 242 FL I + W L E +PV Q AL+ A+A + PI G ++P+T Sbjct: 172 RFLSIVTSVWPAWLAEQGVMNPVARQTALLHAQAARWEREPPAPGTPIWAVGFADAVPST 231 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ++ V + P+G +VLPG+D A+W + HPQ A++L Sbjct: 232 IAMLRAVLSVPDGLLVLPGVDTTCAQAVWEHLPP-------------DHPQAGTARMLAE 278 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L I R+ +++ ++ S L + P+ ++++ Sbjct: 279 LGIARDGMEQWDSLPPGSTATSPAARAGLLARALLPAHALEQWR--APDAPVAADGLSVL 336 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 + +++EEA +IA+ LR L++ +++AL+T DR LA RV EL R+G+ D SAG L Sbjct: 337 RSADQQEEAAAIAMVLRQVLEQPGRRAALVTPDRALAGRVATELVRWGVIADDSAGESLL 396 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 T ++ L ++ A+ +A+ +++KHPLA G + LE + LRG Sbjct: 397 TIPQTAFLRLIVQAVDGGLSPVALLSVIKHPLAACGLSPGNCRASARQLERLVLRGPAPP 456 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 I L+ + PH + + E ++ + PL+ Sbjct: 457 PGIAGLRRALARAADD-------PHGALADAPDAPEEINAFLNRLEAAFGPLLAL----- 504 Query: 543 STCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600 + + + Q++ LW EEG L S ++ + A Sbjct: 505 PVSTPVPVPTLLAALIEVAQDLATTGSADGAERLWAGEEGNALGQHMSAMLAWCDVLPDA 564 Query: 601 NAIEWIDIITRLIDGETV-------KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ + G TV +FI G LE+RL DT++LGGL E V Sbjct: 565 RLGTLDGLLASSLAGMTVQGRRAVRGRAGAVHPRVFIWGLLEARLQTADTIVLGGLVETV 624 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIA 712 WP T P++SR M++ + L E IGQAAHDF A ++ + + R PT+ Sbjct: 625 WPPATDPGPWMSRPMRTRVGLPAPEWVIGQAAHDFVSCACAAPRVVLSVAGRRQGAPTVP 684 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA-QPRTYS 771 +RWL RL L W LD P P P +PR+ S Sbjct: 685 ARWLVRLDAYLAGH---GHGLPAHPALRWLEGLDRPAGVPMPVAPPRPRPAVGLRPRSLS 741 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 +EI+ + DPYA+YARRILKL+ + ++ D D G + H + + + Sbjct: 742 VTEIETWMRDPYAIYARRILKLNRLADLEELADAADYGQIVHAALDRWFRAHPADWPADG 801 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKM 889 M+ + + L P + W +I+ E+ +++ + M Sbjct: 802 AVRMQAVFADVLREAGLRPALAAWWAPRLERIATWCARTEQARRATGAPCTVLTEQGGTM 861 Query: 890 AIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 ++ + L G ADRIDL G + + DYKTG P + + + QL LEAA +++ Sbjct: 862 RLDDLPGGAFTLRGRADRIDLHGDGALSLFDYKTGTLPARRSVIEGWQSQLVLEAAMIES 921 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 G F +VA L Y RL + + + +L + L ++V + EQ Sbjct: 922 GGFPPPVAGRVAELVYWRLTGGHVPAQVLDVARGTELSDLIAHCRQGLHDLVAAYDSPEQ 981 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 P++SH E+ +Y HLARVAEW + Sbjct: 982 PYLSHPWPGEEPRFA-DYAHLARVAEWSAARE 1012 >gi|149184292|ref|ZP_01862610.1| helicase [Erythrobacter sp. SD-21] gi|148831612|gb|EDL50045.1| helicase [Erythrobacter sp. SD-21] Length = 1009 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 242/1075 (22%), Positives = 415/1075 (38%), Gaps = 107/1075 (9%) Query: 1 MHNKK--PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQ 58 M + K PNV++IA F ++ L+ + L LL P+ RA + Sbjct: 1 MADAKGGPNVYSIAAHRGFADALVAGLVPRYADDELGLARLTLLL--------PSARARR 52 Query: 59 ELRSEFIEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLEL 112 + FI G + ++P + +GD+ ++ LL ++ P + +R+ L Sbjct: 53 TVSEAFIRHAGESGRAGLLMPRMAVVGDLDLDEALGPLLDPLGASDIPPAIDPQRRMFAL 112 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 ARLI + A + LA+ +D + E+ E L Sbjct: 113 ARLIAEEMGEEAPKG---------------ATLLRLARETGATMDRLLVEDVGPEKLVDE 157 Query: 173 KN----EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEHLMKGTK 227 K W + W L + L A + Sbjct: 158 KVVDIFPDLSKHWQESIRLFANVQAKWLAWLNAQGMLDAAARRNRLFDKARHAWKAQPPA 217 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 PI+ AG T + PA A+L+ V+ P GA++LP D + +W+ + T +T Sbjct: 218 TPIVAAGVTSAAPALAKLLRVVSELPQGAVLLPDFDLTMDEGVWDELGRAGAAPTPGDTV 277 Query: 288 YS-----THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMR 340 ++ THPQY L LL+ + + RE+V+ ++ RS IS FLPP+ S + Sbjct: 278 FAREDAVTHPQYHLKLLLNRMGVAREEVQPWHRKGMTAAPPERSHAISALFLPPEASKVW 337 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400 +P+ ++ S V ++EA N EEA +IA+ +R +L++ ++ A++T DR LAR Sbjct: 338 V------DLPSEKRRLSGVRIMEAANPEEEAQAIALMVREALEQPDRRVAVVTPDRPLAR 391 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 RV L R+ I D SAG PLS T + + + + L+ HPL G Sbjct: 392 RVVHHLARWNIVADDSAGRPLSHTAAGRAFLLAAEVMAEGARAVPLMALLGHPLVDGGME 451 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 R + R + + E + Sbjct: 452 RGAWLRRLR-------------------RLERALRGPRLASGLEPAQAEVARLAEKRPEI 492 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + PLV + S++D + + LW +E+ Sbjct: 493 AEWWALAEAQLAPLV-----ERDRDTPESLADLIDTLAASAEAL------CGEKLWAQED 541 Query: 581 GKTLSSLFSKIIETGS--CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 G+TL++ + + + +++ ++ V+P + + +LG LE+RL Sbjct: 542 GRTLAAFVEEFRLHAREAGFETAPRDVAKVLSDAMEERAVRPPYGGHARVQVLGLLEARL 601 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 D +I GLNEG WP + + L+ + L + + IG +AHD A G ++ Sbjct: 602 NRADLVICAGLNEGSWPARGSIDALLAPPVLRALGVPGGDFRIGLSAHDLAGAMGAPEVV 661 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 +RS R+ P I SR+L R+ L G + ++ ++ R + P Y RP Sbjct: 662 LSRSGRDEGGPAIPSRFLLRVQALLGELLPRHEERAA---IELARAMTRAEPAPEYSRPM 718 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P P + + S + + +L+ DPY +A++I+ L + DP+ +G + H I+ Sbjct: 719 PKPSPQQRDVDISATALDRLLGDPYQFFAQKIMGLSDLDALDADPNPLWQGNIAHTILER 778 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 R + + + I++ E+EN P + +W+ K +E + Sbjct: 779 WHIARRT----DPDVRIAPIMEEVLEEENADPLVRGLWQPRLLKGLEW-IEETLGSYTER 833 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 E + V M +E + + G ADRID L+ G + I DYKTG P ++ QL Sbjct: 834 EVLAVEAKGSMHVED--VFVHGRADRIDRLEDGTLAIIDYKTGKPPTAAQVEQGYALQLG 891 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC-----------ITNDKKKYSADELS 987 + + G F + Y L + + + N + +E Sbjct: 892 ILGLIAQDGGFEGLTG-DPGGYEYWSLGRAKDDNPHGFGYVEVPLKVGNKRSGVELEEFL 950 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW--REEYDIS 1040 + K L E + G PF + YD L R+ EW R+ D+S Sbjct: 951 PLTRKKLGEAIGKYIKGTDPFTARENP--DYPAYDTYDQLMRLEEWLPRQADDLS 1003 >gi|296117284|ref|ZP_06835875.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC 23769] gi|295976177|gb|EFG82964.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC 23769] Length = 1049 Score = 465 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 261/1064 (24%), Positives = 435/1064 (40%), Gaps = 77/1064 (7%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V T+A PF ++ +P + I +P++RA + L F+ Sbjct: 27 RVVTVAHHVPFLDQLAA--------RWMAEVGDDPQRTGAGLILLPSRRAARALTEAFLR 78 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 ++ +LP I + + E + +L P V ++RL L RL+L D+ Sbjct: 79 RADGRALLLPRIAPIAALDEAALALSGEAALDLPPAVEPMRRLATLTRLVLQAGEAFGDV 138 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAA 185 + A LA+ LAD++D E E E L + + W L Sbjct: 139 -------------RTVDQAWPLARALADLMDEAEWAECDLRERLPDAADGDFAQHWHLTL 185 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---GPIIIAGSTGSIPAT 242 FL I + W L E +PV Q+AL+ A+A H + + AG + ++P+T Sbjct: 186 KFLSIVTGVWPAWLEEQGVMNPVARQVALLHAQAAHWRESPPPAGHRLWAAGFSDAVPST 245 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ++ TV + P G +VL +D + W+ + HPQ A++L Sbjct: 246 VAVLRTVLDLPGGRLVLTPVDMDMDARTWSDLPP-------------GHPQAGTARMLAD 292 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN----------I 352 L + R+ ++ ++ M S + R + +P Sbjct: 293 LGVGRDGLEVWDDLPAGSKAGDMAGSMAGGMVGAPPGRAALLSHALLPASALGQWLDPAP 352 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 ++++ +++EEA +IA+ LR ++++ + +AL+T DR LA RV EL R+G+ Sbjct: 353 APQLDGLSVLHTADQQEEAAAIALILRQAIEQPGRPAALVTPDRALAGRVATELARWGVV 412 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D SAG L+TT ++ L ++ A+ +A+ +L+KHPLA G + LE Sbjct: 413 ADDSAGEGLATTPQATFLRLIVQAVDGGLSPVALLSLLKHPLAACGLSPGNCRASARLLE 472 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 LRG I L++ + T H + + + +D + + + Sbjct: 473 RAILRGPAPPPGIAGLRAAL-------SRATQDEHGALADAPDAPQELSAFLDRLERALD 525 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSK 590 PL++ + LS + LW EEG L + ++ Sbjct: 526 PLLSRASGMEEVVDLLSALVEVAQALATTDAHADTEGGGDGASRLWSGEEGNALGAHLAE 585 Query: 591 IIETGSCIKANAIEWID-IITRLIDGETV--------KPKIEKSSTLFILGTLESRLLNF 641 ++ + A + +D ++ + G TV + + +FI G LE+RL Sbjct: 586 LLTWCDVLPAQRVGALDGLLASSLAGVTVHGRRALRGREQAAVHPRVFIWGLLEARLQTA 645 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLIYT 700 T++LGGL E VWP T P++SR M++ + L + E IGQAAHDF A ++ + Sbjct: 646 GTIVLGGLVETVWPPATDPGPWMSRPMRTRICLPSPECAIGQAAHDFIACACAAPEVVLS 705 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-TKQPHYKRPKP 759 R P +A+RWL RL L W +LD P+P Sbjct: 706 VPGRRQGAPAVAARWLVRLDAYLSGRGQA---LATHPALSWLERLDRPSGAPAPVAPPRP 762 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 PP+ +PR+ S +EI+ + DPYA+YARRIL L + ++ D D G + H + Sbjct: 763 CPPVALRPRSLSVTEIEIWMRDPYAIYARRILGLKPLAGLEEMADAADYGEIVHEALDRW 822 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + + + M ++ + L P + W +I+ EE ++ Sbjct: 823 FTRYPDHWPRDGEEEMVRVFEQVLHDARLRPALAAWWAPRLGRIARWCAMTEEARRAGGA 882 Query: 880 K--IFVNIPAKMAIES---IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 + + KM + L G ADRID G + + DYKTG P + + Sbjct: 883 SCSVMTELSGKMELSGFSFGTFVLRGRADRIDRDGEGGLSLFDYKTGTLPTRASVLAGWQ 942 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 QL LEAA ++AG F+ +V L Y RL + + + +L K L Sbjct: 943 SQLVLEAAMIEAGGFAPTVAGRVTELVYWRLTGGHVPARVLDIARGEELSDLIAKCRAGL 1002 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + V N P++SH E+ +Y HLARVAEW + Sbjct: 1003 YKRVADYDNPHMPYLSHPHPGEEPRFA-DYAHLARVAEWSAARE 1045 >gi|302384282|ref|YP_003820105.1| double-strand break repair protein AddB [Brevundimonas subvibrioides ATCC 15264] gi|302194910|gb|ADL02482.1| double-strand break repair protein AddB [Brevundimonas subvibrioides ATCC 15264] Length = 1013 Score = 462 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 250/1059 (23%), Positives = 417/1059 (39%), Gaps = 82/1059 (7%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P F I PF ++ +L+ P L+ TI +P +RA + Sbjct: 8 AGDTPRWFAIPAHRPFLEDLAAGVLDW-------LGDNPPEALSDATILLPNRRAARAFG 60 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWR 120 + + +LP ++ LGD+ E++ L +L P ++++ R E+AR+I+ Sbjct: 61 AALATQAADRPVLLPQVRPLGDLEEDEPPFSPGELGLDLPPAIASLTRRFEMARMIVE-- 118 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK-KWEDLHALKNEKYGM 179 + ++P A+ LA L +D EE + + E + Sbjct: 119 --------------QFAPGLAPLRALELADGLGAFLDSCHIEEVADPGMVASFGGEDFAE 164 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238 W +A+FL +A + W +RL + + L+R AE +GP+I AGSTG+ Sbjct: 165 HWQASAEFLGLAVEAWPKRLEAMGLVDASWRRTKLLRLLAERWAGSPPQGPVIAAGSTGT 224 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 + A A ++ VA+ P G +VLPGLD + W I HPQ +L + Sbjct: 225 VKAAADVLKAVASAPQGCVVLPGLDADLDETAWGAIE-------------EQHPQSALKR 271 Query: 299 LLDFLDIKREDVKRL------GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK---- 348 LL+ + R V+ V R +I ++ P + + +I + Sbjct: 272 LLERAGVARAAVRPWFRRPVDPGVEARGLARQRLIHEALRPAEATADWREEIRGLRGRAA 331 Query: 349 -----IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 I ++++ E E A +IA+ +R SL+ + AL+T D L RRV Sbjct: 332 EAGQSADPIALGLQGLSVVTTRTEEEAAATIALMMRESLEMPGRTCALVTPDLALGRRVA 391 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L R+G+ D S+G L ++ + + L+KH L Sbjct: 392 ARLERWGVVADSSSGTGLGQMPVGVLVDLCVRWMADPLAPQTALALIKHELTTLPEATSD 451 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 A LE VA RG + D +++ + A ++N W + LA L Sbjct: 452 ---AVVELEKVAFRGPRT-RDWTRVEARLTQAGAPRRNGQPPSDWTLGRLAQATALAGRL 507 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 P + ++ + ++W +G+ Sbjct: 508 QALSGTATAPFAPRAPLDAAARSLTTLIEALAG----------------ADVWAGSDGEA 551 Query: 584 LSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 +++ S++IE G+ + + + E+ +++ L+ TV+ +L ILG +E+RL+ D Sbjct: 552 AAAMLSQLIEGGASLGEVSPGEFAELVAGLVRDTTVRTGGATHPSLRILGAIEARLVRAD 611 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 +IL GL EGVWP+ +PFLSR M+ L+L E+ +GQ A DF I + Sbjct: 612 RMILAGLEEGVWPRGAPVDPFLSRPMRKALDLPPPERRVGQTAQDFVQGACAPEAILIHT 671 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--HYKRPKPF 760 R P + SRWL RL +L D R R LD KRP P Sbjct: 672 ERRGGQPAVRSRWLWRLEMLTRGAGVD--LDRPTEMQATARALDAPGFGQGGLAKRPAPK 729 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 PP+ +PRT + +++ + DPYAVYAR +L L + + + RG H + L Sbjct: 730 PPVARRPRTLPVTGVERWVRDPYAVYARYVLNLRPMDRPGQSAEALLRGQAIHKAVERLT 789 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + + + ++ L + E + ++ + Sbjct: 790 LAWPDVLPEDCEDQIVHLLHEELRHHGFEDAAMAREGPLARNAARWLTAFETRRRAQGIE 849 Query: 881 IFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 I V + ++ +T ADRI+L +G I D+KTG P + + PQL+ Sbjct: 850 IRVEEEVALTFDADAGPFTVTAKADRIELSSTG-AAILDFKTGAAPSAKQVKSGFAPQLT 908 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 L A L S + +L Y+R+ + + A +LS +L L V Sbjct: 909 LTGAILAEAGLSDTGPVEPEDLTYVRVVGRKVAGEAKTLAQGTEAADLSMAALAGLKARV 968 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 P++S + N YDHLARV EW Sbjct: 969 RRFDLETTPYLSWVAPQFMGNFGGNYDHLARVWEWHVAG 1007 >gi|315497131|ref|YP_004085935.1| double-strand break repair protein addb [Asticcacaulis excentricus CB 48] gi|315415143|gb|ADU11784.1| double-strand break repair protein AddB [Asticcacaulis excentricus CB 48] Length = 1006 Score = 459 bits (1180), Expect = e-126, Method: Composition-based stats. Identities = 289/1067 (27%), Positives = 459/1067 (43%), Gaps = 111/1067 (10%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P ++I PF ++ L L I PT+R +++ Sbjct: 9 TPAPRWYSIPSGRPFLDDLARGLCEALG-----------DDLPHALILTPTRRGARQMAH 57 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRN 121 F + K+ +LP +++LGD+ E + DL L +L P +S+ +R ELA+LI Sbjct: 58 AFTDQCRAKALLLPQVRALGDLEEGEPPFDLEHLGLDLPPALSSTRRRFELAKLIKAHYE 117 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED----------LHA 171 +P++ A+ LA +LA D + EE + D L Sbjct: 118 --------------SDVPLNARTALELADSLAKFFDSLALEEVEASDRLDRLVHDPDLLH 163 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPI 230 W ++A FL IA W +RL EL+ P + L+ + P+ Sbjct: 164 DDMGAMAEHWQVSARFLAIAVDLWPKRLAELDLMDPSQRLVTLIHRLGKQWEKTPPTHPV 223 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 IIAG+TG+ PATARLM + GA+VLPGLD + +W + + + Sbjct: 224 IIAGTTGTTPATARLMGLASRFEQGAVVLPGLDLSLAEDVWAQVGD-------------S 270 Query: 291 HPQYSLAKLLDFLDIKREDVKRLG---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 HPQ ++ LLD + RE V + R V++++ P + + T I Sbjct: 271 HPQGAMKALLDRHRVSREVVNTWPVSIEADRARHARRRVLNEALRPAEATKDWRTQIAAL 330 Query: 348 KIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 K + S + IE N+ E A IA+ +R +L+ K +AL+T D L+RRV Sbjct: 331 KAGSEAAIKDGLSGLTHIEGRNDEEVAAVIALLMREALETPGKTAALVTPDITLSRRVTA 390 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L+R+G+ D SAG L +L L SLL+ I + D + + L+KHPL++F Sbjct: 391 RLSRWGVRPDSSAGDALIHSLVGRFLHSLLDLILEPFDAVKLLALLKHPLSRFADD---- 446 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 R N LE++ LRG K L L E E A L Sbjct: 447 -RHVNILEIIGLRGAKPRNAEEVLSRLTQK--------------------EAFEAADLWQ 485 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 D++ C+ +SD+ + ++V + + LW G T Sbjct: 486 DYMDTCL----------IWQRQKTDLSDYVRTLTVWAESVAARDGQ---ALWSGAAGATA 532 Query: 585 SSLFSKIIETGSCIKA-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 S+L + +I G + ++DI+ R + TV+ L ILG +E+R+ + D Sbjct: 533 SALLADLIAEGRDFLVEDDQVFVDILRRALRTATVRTGGHTHPRLTILGAIEARMFSADR 592 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 LIL GL EGVWP+ +PFLSR M+ L L + E+ G +AHDF + Sbjct: 593 LILAGLEEGVWPQAAEIDPFLSRPMRKVLGLPSPERRTGLSAHDFVQGASQPEVWMVTRQ 652 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPK 758 R P + SRWL RL L +LDW R++D RP+ Sbjct: 653 RREGEPQVQSRWLWRLQTLTTGAGEH--LPTKAQWLDWARRMDGPLSVVPDALKPASRPQ 710 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P PP+EA+P ++I+ L DPYAVY R +L L + + + RGT H + + Sbjct: 711 PAPPVEARPLQLPVTQIETLERDPYAVYGRYVLGLKPLDRPNEPFEALRRGTAIHAVAEK 770 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + ++++ ENL + R LF ++ ++ E + ++ Sbjct: 771 FAADDM-PMGEAGVRVFCDMLEAQLRAENLSEAQLALQRPLFPLLAREYVAFEAERRADH 829 Query: 879 EKIFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 ++ + K+ I+ +T ADR+++ + G VD+ D+KTG P + PQ Sbjct: 830 PRLLIEQSGKLTIDLPRGTFTVTAKADRVEIHERG-VDVIDFKTGQPPSPKAVIAGFYPQ 888 Query: 937 LSLEAAALKAGSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKK-KYSADELSEKSL 991 L+L AA LK GSF+ + + L Y+RL Q + DKK SADE+++++L Sbjct: 889 LTLTAAILKYGSFNGFEDFHRAKGLHELVYVRLGQDVVKPRVVYDKKNPLSADEMADRAL 948 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L + +N +Q ++S + +YD LAR+ EW D Sbjct: 949 SRLKTRLMQYENPKQGYLSWRAPQYRMERGGDYDQLARLYEWHVLGD 995 >gi|254420230|ref|ZP_05033954.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3] gi|196186407|gb|EDX81383.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3] Length = 1031 Score = 459 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 267/1067 (25%), Positives = 436/1067 (40%), Gaps = 81/1067 (7%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 P + + PF ++ +L L P L+ TI +P +RA + Sbjct: 10 ASPRWYAVPAYRPFLEDLAAGVLAW-------LGDLPPETLSDATILLPNRRAARAFTGA 62 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ + +LP ++ LGD+ E++ L +L P + + R E+AR+I+ Sbjct: 63 LSKLSQGRPILLPQVRPLGDLEEDEPPFTPGALGLDLPPAIPALTRRFEMARMIVE---- 118 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWW 181 ++P A+ LA L +D + EE E + L + + W Sbjct: 119 ------------QFDNSLTPMRALDLADALGGFLDSCQLEEVPNPERIATLVDGEMAEHW 166 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIP 240 +A+FL +A + W +RL EL P + L+R AE +I AGSTG++P Sbjct: 167 ERSAEFLGLAVEAWPKRLAELGLVDPAWRRATLLRRLAELWDHTPPTQAVIAAGSTGTVP 226 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 A ++ VA P G +VLPGLD + A+W+ + HPQ ++ +LL Sbjct: 227 AAGDVLKAVARAPLGCVVLPGLDLDLDAAVWDRLD-------------EQHPQSAMKRLL 273 Query: 301 DFLDIKREDVKRLGNVSNEMYG------RSMVISKSFLPPDTSDMRNTDILENKIP---- 350 D +++ R DV+ S R +++++ P + +D I + + Sbjct: 274 DRVEVARADVRPWFAPSQPPAALARGQARQRLVNEALRPAEATDDWRRAIRDLRSTAAAR 333 Query: 351 -----NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-----KKKSALITADRNLAR 400 I + ++L+ E E A +IA+ +R +L+ + AL+T D+ L R Sbjct: 334 GEARDPIAEGLQGLSLLTVRAEEEAAAAIALMMRETLETPNPDGTGRTCALVTPDQALGR 393 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 RV L R+G+ D SAG+PLS +++ I + +VKHPL +F Sbjct: 394 RVAARLERWGVIPDSSAGVPLSRLPAGALVDLCARWIADPVQPHLLLAIVKHPLVRFDLG 453 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 + + A ALE ALRG + + + R+ E A Sbjct: 454 DAPQAAAVAALEEHALRGPRPRD-----FAAIRRRLLEAVEPDRRGKAPPEWKRERLSAA 508 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 LV+ + I + G + + T D W + Sbjct: 509 TRLVERLQTAIEAATAVFLPQTERNGADLNAAASAFTRLIETLAGQDA-------WAGPD 561 Query: 581 GKTLSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 G+ ++L S +IE G+ + + + + ++ T L+ V+ +L ILG +E+RL+ Sbjct: 562 GEAAAALLSGLIEGGASLGRIDQTDLAELTTSLVRETVVRTGGATHPSLRILGAIEARLV 621 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 D +IL GL EGVWP+ +PFLSR M+ L L E+ +GQ A DF A +I Sbjct: 622 RADRMILAGLEEGVWPQAAPTDPFLSRPMRKALGLPPPERRLGQTAQDFVQAACADEVIL 681 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK---KRGQCYLDWTRKLDYTTKQPH--Y 754 S R P + SRWL RL +L R + LDWTR LD P Sbjct: 682 VHSERRGGQPAVRSRWLWRLEMLTRGAHSAETPIELPRPRTVLDWTRALDAPPPGPPRFA 741 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 KRP+P PP+ +PR+ + I++ + DPYA+YA +L L+ + + RG H Sbjct: 742 KRPEPRPPVHRRPRSLYVTRIERWVRDPYAIYALWVLGLEAMERPGASAEALARGNAVHA 801 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 I L + + ++ + L + + E + Sbjct: 802 AIERLTLDWPDDLPDDCEAVLHDHLLRELGARGFEDAAMAREAPLARNCARWLTDFERRR 861 Query: 875 QSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 ++ I V M + + FADRI+L G + D+KTG P + + Sbjct: 862 RARGIDILVEQQGTMTFDAPAGPFTVKAFADRIELASDG-AAVMDFKTGAAPSAKQVKSG 920 Query: 933 IDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 PQL+L AA L G F + L Y+R+ + + A +L++ +L Sbjct: 921 FAPQLTLTAAILADGGFERTNGPVTPDELTYVRVVGRKTAGEVITRASGAEAADLAQAAL 980 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L V + P++S N YDHLARV EW D Sbjct: 981 DGLKRRVARFDDENTPYVSWAAPQFMGNQGGNYDHLARVWEWSVIGD 1027 >gi|329847171|ref|ZP_08262199.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum C19] gi|328842234|gb|EGF91803.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum C19] Length = 999 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 273/1058 (25%), Positives = 432/1058 (40%), Gaps = 108/1058 (10%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + P FTI PF ++ L + L I PT+R + + Sbjct: 8 PSPDPRWFTIPSGRPFLDDLARGLCRSLGKD-----------LPEAQILTPTRRGARAMA 56 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWR 120 F T + +LP I+++GD+ E + DL +L +S+++R ELARLI Sbjct: 57 RAFSTQTRGGALLLPQIRAIGDLDEGEPPFDLEALGLDLPSAISSLRRRFELARLITEHY 116 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKY-- 177 L +S A+ LA +LA D + EE + LH+L + Sbjct: 117 KGL------------EGRNVSGKLALELADSLAKFFDSLALEEVDATDRLHSLVTGQGGD 164 Query: 178 -------GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGP 229 W ++A FL IA + W +RL EL P Q+ L+R K P Sbjct: 165 QYSLDSWAQHWQVSAQFLAIAVEAWPKRLSELGMMDPSQRQVTLIRRLINQWTEHPPKTP 224 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 +I+AG+TGS P+TA L VA GA+VLPGLD + W+ I + Sbjct: 225 LILAGTTGSAPSTADLAKVVAAASMGAVVLPGLDLSLADDAWDQIED------------- 271 Query: 290 THPQYSLAKLLDFLDIKREDVKRLG----NVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 +HPQ ++ ++LD ++ R V+ + + R +++++ P + + I Sbjct: 272 SHPQGTMKRMLDRHNVARATVRVWPVSLEDDRRKANARRRLLNEALRPAEATKDWRDQIA 331 Query: 346 ENKIPN---IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 + + I + I A + E A IA+ +R +L+ K AL+T D LARRV Sbjct: 332 ALRAESDTAIDDGLDGLTEINAARDEEAATVIALLMRETLETPGKTVALVTPDLTLARRV 391 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 LTR+G+ D SAG PL+ + L LL + D +AI +L HP F Sbjct: 392 SARLTRWGLQADSSAGEPLANSPTGRFLLDLLTLLQTPCDPVAILSLWGHPACLFATDPG 451 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + D+ +++ +++R A Sbjct: 452 ------RTHVEMYGLRGATPNDMDSVRAALIERNR----------------------ATD 483 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L D I P+ ISD + + LW G Sbjct: 484 LWDRYAAAILPVAEM-----------PISDLGEAATRITRLAESLSLDDGQALWTGAAGA 532 Query: 583 TLSSLFSKIIETGSCIKAN-AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + L + +I G+ + + DI+ +LI V+ L ILG +E+R++ Sbjct: 533 SAAELLAGLIREGAGYTVDTLRDVADILGQLIRNGKVRTGGNTHPRLLILGAIEARMVTA 592 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 D LIL GL EGVWP+ +PFLSR M++ L L + E+ G +AHDF A Sbjct: 593 DRLILAGLEEGVWPQAPDLDPFLSRPMRAALGLPSPERRTGLSAHDFVQAASAPECFLVT 652 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-----TTKQPHYKR 756 R P + SRWL RL L D +LDW R LD R Sbjct: 653 RHRREGEPQVQSRWLWRLQTLCKGAKVD--IPSDGRWLDWARALDRGLSDKPAALKPAVR 710 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P P PP+EA+P+ S +E++ I DPYA+YA+ +L L + + + RGT H + Sbjct: 711 PNPKPPVEARPKKLSVTEVEVFIRDPYAIYAKHVLALRPLDRPNEPVEGRQRGTAIHKSL 770 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + + + ++ L P + + L ++ F+ E ++ Sbjct: 771 ERFVTED-TPLGKAGIDRLCDLLHEELAATRLSPAQMALQKPLLPGMAAEFIRFEADRRA 829 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 K+ + ++ I L ADRI+L G VDI D+KTG P + PQ Sbjct: 830 HRPKLHIEQRGELKI--GDFTLVAKADRIELRDDG-VDILDFKTGAAPSAKAVAAGFYPQ 886 Query: 937 LSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 L+L AA LK G F+ I + +L Y+R+ + +K A +L++ +L +L Sbjct: 887 LTLTAAILKQGGFADIRADRPLGDLLYVRVSPD-VTKPQSAVQKGLFAHDLADAALNSLR 945 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 + ++ ++S +YD LAR+ EW Sbjct: 946 RRIFAYAEADKGYLSWTAPQFLKTRAGDYDQLARLYEW 983 >gi|85373840|ref|YP_457902.1| helicase [Erythrobacter litoralis HTCC2594] gi|84786923|gb|ABC63105.1| helicase [Erythrobacter litoralis HTCC2594] Length = 994 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 244/1067 (22%), Positives = 422/1067 (39%), Gaps = 117/1067 (10%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P V++IA F ++ L+ + L LL P+ RA++ + FI Sbjct: 11 PQVYSIAAHRGFADALVAGLVPRYAEDGLGLARLTLLL--------PSTRAMRTVSEAFI 62 Query: 66 EI---TGKKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSNIQRLLELARLILIW 119 G K ++P + ++GD+ ++ LL ++ P V R L LA Sbjct: 63 RHFGEIGVKGMLMPRMAAIGDLDLDETLGSLLDPLGASDIPPAVDPTYRWLRLAE----- 117 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-----ALKN 174 L D++ D P+ A+ LA+ A +D + E+ E+L L + Sbjct: 118 --VLRDVMGDDAPQG--------ASLFVLARETAQTMDRLLVEDIGPEELLQDRVLDLFD 167 Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIA 233 W ++W L E A + L A+ + PI+ A Sbjct: 168 RDLAKHWQDNLRRFAKVQQFWLAELGERGALDAAARRNRLFERAAKRWKAEPPATPIVAA 227 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---- 289 G T + PA ARL+ V+ P GA++LP LD + A+W + S ++ Sbjct: 228 GVTSAAPALARLLRVVSELPQGAVILPDLDLTMDAAVWEELGRAGAPAASGGAPFAKDDA 287 Query: 290 -THPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 THPQY L LL+ + + R++++ RS +S FLPP+ S + Sbjct: 288 VTHPQYHLKLLLNRMGVSRDEIQPWHRKGSGAARSERSHAVSAVFLPPEASKVWV----- 342 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 +P+ ++ S + L+E N EA ++A+A+R +L E +++ A+IT DRNLARRV L Sbjct: 343 -DLPSEKRHLSGIRLMELPNPEAEAQAVALAVRQALAEPERRVAVITPDRNLARRVVHHL 401 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R+ I D SAG PL+ T + L + + + L+ HPL + G + R Sbjct: 402 RRWNIEADDSAGRPLAQTTAGRLFLLLAEVMGTNAAPVPLMALLGHPLVRQGEERRQWLR 461 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 ALE RG++ + + ++ + + + + Sbjct: 462 DLRALERKL-RGSRPAPGLAAIRPVAR-----------------------EAQVIDWWEE 497 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + PL + +++ + LW +E+G+ LS+ Sbjct: 498 VEALLGPLAGTDDPLSLADCLDTLAAVGEAL-------------CGEALWAQEDGRALSA 544 Query: 587 LFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + + + I+T +D V+P + I G LE+R+ D + Sbjct: 545 TVEDLRQHARAVGTQIRRADAHAILTDAMDQVAVRPPYGGHPRVAIYGLLEARMSRADLV 604 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 I GLNEG WP + +P L+ + L + A+ IG +AHD A G ++ +RS R Sbjct: 605 ICAGLNEGSWPGRPSVDPLLAPPVLRALGVPGADFRIGLSAHDLAGALGAPEVLLSRSER 664 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + P I SR+L R+ L G + + ++D +P Y+RP+P P E Sbjct: 665 DAEGPAIPSRFLLRVKALLGELLE---RYEERDLPRLAERIDDAPLEPRYQRPEPMPSAE 721 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + S + + +L +DPY YA IL+L + +P +G L H+I+ + Sbjct: 722 ERRERISVTALDRLRSDPYQFYASAILRLKELDGLDAEPTPAWQGQLAHDILEHWHEHGG 781 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + I + + + P +W K + E + + Sbjct: 782 S---------LPDIAKAKLTEMDHHPLTRALWEPRLMKALEW-VASEIEGDMDRTPVLWE 831 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + IE G+ + G DR+D L G + DYKTG P + QL + Sbjct: 832 KWGE--IEHRGVTIFGRIDRLDRLADGTFAVVDYKTGSPPSGSQVEAGYALQLGTLGLMV 889 Query: 945 KAGSFSQIDCRKVANLF-YIRLKQK------------FKIDCITNDKKKYSADELSEKSL 991 G F++ A+ F Y L + I+ + +E K+ Sbjct: 890 GKGGFAKHGIHGAASAFEYWSLAKAKSATHETGFGYIETPLKISGKRSGIDPEEFLPKAA 949 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L + ++ G++PF + L + YD L R+ EW+ + Sbjct: 950 DYLDDALSRWVLGDEPFTARLNP--DAPGYDTYDQLMRLDEWQGREE 994 >gi|87200014|ref|YP_497271.1| helicase [Novosphingobium aromaticivorans DSM 12444] gi|87135695|gb|ABD26437.1| helicase [Novosphingobium aromaticivorans DSM 12444] Length = 993 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 228/1057 (21%), Positives = 412/1057 (38%), Gaps = 102/1057 (9%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 +P V++IA F ++ L+ + F LA +T+ +P++RA++ + Sbjct: 4 ARARPRVWSIAAHRGFADALVAGLVPRYREDRFG--------LARLTLLLPSQRAVRTVT 55 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLIL 117 F+ +G +LP + +GD+ ++ LL ++ V + RLL +A ++ Sbjct: 56 EAFVRASGAG-LLLPRMTVVGDLDLDETLGPLLDPIGAGVDMPEAVDPVWRLLRIAGILR 114 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--- 174 + A + A+ +A ID + E + E + Sbjct: 115 ---------------DELGEDAPGEAALLRQARGIAQGIDRLLVEGVQPERMLDEAVIGI 159 Query: 175 -EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIII 232 + W + W L + + L+ A + P+I Sbjct: 160 AAELSEHWQESTRLFARVFFRWRAELEAIGKVDAPERRNRLLDHAARSWRERPPAHPVIA 219 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS--TNITSSNTTYST 290 AG T + P ARL+ TVA+ P G +VLP LD + +W+ + T Sbjct: 220 AGVTSASPVVARLLRTVADMPEGGVVLPDLDLALDPEVWDALGSAGGPDGGLFERGDVVT 279 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 HPQY L LL+ + I R++V+ + RS IS FLPP+ S + Sbjct: 280 HPQYHLKLLLNRMGIARDEVQPWHRAGLAAAPPERSRAISNLFLPPEASAAWVSLEAR-- 337 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408 ++ + V ++E + EEA +IA+ +R +L E +++ A+IT DR+LA R+ L R Sbjct: 338 ----ERRLAGVRVMETAHPEEEAQAIAVLVREALKEPERRVAVITPDRSLAARIVAHLGR 393 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 + I D +AG PL T +L L + + + + L+ HPL + G Sbjct: 394 WNIGADDTAGRPLPQTAAGRLLLQLAEVVAERAAPVPLLALLGHPLVQGGEGRPVWLERV 453 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L+LV RG + + ++ V + Sbjct: 454 RQLDLVL-RGPRPGPGLPAIRQAVDKTAKR------------------FPALPDWWSGVE 494 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + PLV + +++ + + LW + +G++L++ Sbjct: 495 DLLFPLVPLEGAVPLDMALVALVEAGEAL-------------CGTALWAQADGRSLAAFV 541 Query: 589 SKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + + E ++ ++ +V+P L I G LE+R+ D +I Sbjct: 542 ERWRDAAGDAPAMVDVAELPSLLRDAMEEISVRPPWGGHPRLAIYGLLEARMSRADLVIC 601 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 GGL EG WP + A +P L+ + L + AE IG +AHD A G ++ + + R+ Sbjct: 602 GGLTEGTWPGSPAPDPLLAPAILRALGIPGAEFRIGLSAHDLAAALGAPEVVLSHARRDA 661 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + P I SR+L R+ + G + ++ R L + + +P+P P E + Sbjct: 662 SGPVIPSRFLLRIHAMLGDQLRIE-----ERAVELARALADADRIAPHPQPRPMPSAEQR 716 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + + + +L DPY YA IL L + DP +GT H+++ + Sbjct: 717 RVPIAVTALDRLRGDPYQFYASAILGLRSLDPIDADPTPAWKGTAVHDVLKAWHESGGVP 776 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNI 885 + + + F++ + P + +W+ H E + E + V Sbjct: 777 G------QLVPLAERMFDEMSAHPFMRTMWKPRLVDALHWIEEETDRLAGEGREVLAVER 830 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 ++ ++ GI + G ADRID L G + + DYKTG P + + QL L + Sbjct: 831 KGEIVVD--GIRIHGRADRIDRLPDGTLAVVDYKTGKPPSGKMVAEGFALQLGLIGLIAR 888 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFK--------IDCITNDKKKYSADELSEKSLKNLIEI 997 G + + Y L + + T + +E +++ L E Sbjct: 889 GGGMDGV-AGEPTAFEYWSLGRNKERGFGYMKSPVKETARQTGIPREEFLDRTEDYLHEA 947 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 + G +PF + L S+YD L R+ EW+ Sbjct: 948 IARWLLGSEPFTARLNP--DLPGYSDYDQLMRLDEWQ 982 >gi|119385519|ref|YP_916575.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222] gi|119375286|gb|ABL70879.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222] Length = 980 Score = 452 bits (1162), Expect = e-124, Method: Composition-based stats. Identities = 243/1053 (23%), Positives = 408/1053 (38%), Gaps = 100/1053 (9%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M + + VF + + F L+ R P +A VT+Y + +++ L Sbjct: 1 MPDWQNGVFALPCGADFPGAFAEGLI-------RRMRHHPPQEMARVTVYANSGQSLMAL 53 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 R I+ L+ + + R LEL RLI Sbjct: 54 RQALIQRG----------------PLLLPRLRLIADLGGGAATTPLARRLELGRLIDAAL 97 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 PD+ + + LA +LA ++ ++ E + L + ++ Sbjct: 98 RAQPDLAQGQ-------------SVPELAASLAGLMAEMQLEGLDAQALDRIDASEHAQH 144 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 W A FLKIA+ Y+ + + + A +GP+++AGSTGS Sbjct: 145 WGRALAFLKIAAGYYLSD-PPQDREARQRAAAEALAAAWARGEMLPQGPVVVAGSTGSHG 203 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 AT M VA P GA+VLPG D +P +W+ + ++ HPQ A L+ Sbjct: 204 ATRDFMRAVARLPMGAVVLPGFDADLPQGVWDGLDQR----------SEDHPQARYAPLV 253 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 E + R+ +IS + P +D + ++ + + Sbjct: 254 AEFGAPAE----WLADTAPDPARNRLISLALRPAPVTDQWIEE--GPRLGPLAPATERLT 307 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 LIEA+ EEA ++A+ +R +++ + LI ADR L RRV+ L R+GI D SAG P Sbjct: 308 LIEAEQPGEEAEAVALIIREAVER-GQPVTLIAADRMLTRRVQSALDRWGIIPDDSAGQP 366 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T L + + A+ L+KHP+ G Y + L + Sbjct: 367 LPLTAPGLFLRHVADLFGAEMMLDALLVLLKHPVTATGLGSDYRREHNRHTRDLELHLRR 426 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 N D +L ++ W + L+ Sbjct: 427 NGPAFPDGAALREWADRGDASSKPWALW----------------------LAGLLDRIVP 464 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGS-C 597 ++D + +++ LW + G S+ + Sbjct: 465 LAQDRAPRPLADRLRDLRALAEDLAAGPGGDAGASELWAKASGGLARSVLDHLAAHAHLG 524 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR----LLNFDTLILGGLNEGV 653 E+ D++ + G+ V+ + + G E+R +IL GLNEG Sbjct: 525 HDLRPGEFCDLLYDELQGQAVRQDVAAHPLVRFRGPREARTEAVGKAAGLVILSGLNEGG 584 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 WP+ +P+LSR M+ L E+ +G AAHDF+ A G ++ TR+ R+ TI S Sbjct: 585 WPQALPPDPWLSRPMRLAAGLTLPERRVGLAAHDFQQAVGAGAVVLTRARRDAEAETIPS 644 Query: 714 RWLQRLLVLGG-------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 RWL RL+ L G +++RG+ +LD + P Sbjct: 645 RWLNRLVNLLGGLPDQQGPQALAEMRRRGRYWLDLAELQARPRIRLAPAPRPSPIPPPPA 704 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN- 825 R S +E++ LI DPYAVYARR+L L + + +PD +RG + H+I+ ++ + Sbjct: 705 LRELSVTEVRTLIRDPYAVYARRVLGLRALDPLRPEPDAAERGNMLHHIMDRFLRGLPDL 764 Query: 826 -KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + + I D E E P + WR I+ + E + + V Sbjct: 765 PETPQAMKARLLAITDEVLEAEVPWPSARLFWRARIAGIADRLMADEAERLARGTPTVVE 824 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + I + L DR+D L G V + DYK+G P + D QL LEAA + Sbjct: 825 EYGEQGIPGLDFRLIARPDRLDRLHDGQVHVYDYKSGKPPTDKQI-AHFDKQLPLEAAMV 883 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + G+F + +V + YI+L + + + +E++ + ++ G Sbjct: 884 RHGAFRTLGPAEVEGISYIQLGGEGRTEPREFSAG------FAEETWAGFVTLIRRYLGG 937 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 E+ F + L + E+S+ S+YDHL+R EW Sbjct: 938 ERGFTARLAM-ERSDHASDYDHLSRHGEWDTTE 969 >gi|114328673|ref|YP_745830.1| ATP-dependent nuclease subunit B [Granulibacter bethesdensis CGDNIH1] gi|114316847|gb|ABI62907.1| ATP-dependent nuclease subunit B [Granulibacter bethesdensis CGDNIH1] Length = 976 Score = 450 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 275/1054 (26%), Positives = 448/1054 (42%), Gaps = 102/1054 (9%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 + +I P PF + A L +PL A I +PT+RA + L F+ Sbjct: 2 RITSIPPDWPFLDTVASAWL--------GKGEQSPLDTADGIILLPTRRAARALADAFLR 53 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 I+ + +LP I +LG + E +L P V +RL EL RLIL + Sbjct: 54 ISNGRPLLLPRITALGALDETPLALHGA--LDLPPAVDTPRRLAELTRLILALPD----- 106 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWWLLAA 185 +S NA LA+ LA ++D L + + W Sbjct: 107 -----------PALSADNAWMLARELAKLLDEAARAGIDLATSLPDAVDPSFAAHWQTTL 155 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATAR 244 FL+I ++ W + L E + P Q AL+R +A H + AG +G+ PA A Sbjct: 156 TFLQIVTRAWPDWLAEEGLTDPAARQAALLRIQATHWQDHPPATRLWAAGISGAAPAEAM 215 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ T+A G ++LPGLD +P W + ++HPQ + LL +D Sbjct: 216 LLKTIARLKQGLVILPGLDMTMPEEAWGMLE-------------ASHPQAGMRDLLAMMD 262 Query: 305 IKREDVKRLGNVSNE--MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 +R+DV G RS ++ ++ LP + + V + Sbjct: 263 ARRDDVAPWGLTPPPSRPADRSRLLHQALLPAEALTLWR--------ETTPPSSESVFRL 314 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 EA++E++EA++IA+ LR +L+ +++ALIT DR LA RV EL RFG+ D SAG PL+ Sbjct: 315 EAEDEQQEAVAIALILRDALETPGRRAALITPDRGLAVRVSTELARFGVIADDSAGEPLA 374 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 T + L L + +++ +L+KHP+ G A LE ALRG + Sbjct: 375 ETPPALFLRLLAETVRSGFSPVSLLSLLKHPMTALGMDRLMTLHAARGLEQHALRGPRPP 434 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + L++++ E K A L+D + Q + PL+ + Sbjct: 435 PGLSGLRAVL---------------------EAGKTEAAALIDRLEQVLHPLIDLVAQEK 473 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-N 601 L D H LW EEG+ L+ L ++ + + + Sbjct: 474 ----LAPHDYLRALLTAGEAVAASDTHSGAERLWALEEGEALAVLLAETLPALTVLPPQP 529 Query: 602 AIEWIDIITRLIDGETVKPK---------IEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + +++G V+ + + LFI G LE++L + D +LGGL+EG Sbjct: 530 PDTLPGLFDAVLEGIAVRSRRALRRFGENDAEHPRLFIWGLLEAQLQHVDVAVLGGLSEG 589 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTI 711 VWP T P++SR M+S + L +AE+ IGQAAHDF A + + I + R P + Sbjct: 590 VWPPATDPGPWMSRPMRSRVGLPSAERIIGQAAHDFVQAVCSASVAILSCPARREGAPVV 649 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 +RWL R+ L W LD + + P+P PP ++PR+ S Sbjct: 650 TARWLARIDALLKGH---GKHLPTHPATAWAGILDQPERPAPVRPPRPCPPRRSRPRSLS 706 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-E 830 +EI + ++DPY VYA RILKL + ++D D D G + H+ + ++ + + Sbjct: 707 VTEIGRWLSDPYRVYAERILKLKPLDPLEQDTDAADFGMIVHDGMQCFLENAARQWPDGD 766 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + ++ ++ N P + W +I+ E++ KI Sbjct: 767 LPAALRTAFRVALDRHNPRPALRSWWLPRLDRIAAWVATREQRD----TKIHTETSGIWH 822 Query: 891 I---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + L G ADRI++ + G + + DYKTG P PQL LEAA +KAG Sbjct: 823 LSAFPGGPFTLKGRADRIEIRQDGSIRLLDYKTGTVPSAPAILSGEAPQLPLEAAMMKAG 882 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 +F + + + L Y RL + A+E ++ + + L ++V + Sbjct: 883 AFPDVPAQYPSELVYWRLSGGRVAGEEIILGRKAPAAWAEEQAQLAAEKLRDLVMRYDDP 942 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 + P+++ + + Y HLARV EW + + Sbjct: 943 DFPYLAQPFAPGHAPM-DAYAHLARVPEWADGDE 975 >gi|114800509|ref|YP_760585.1| hypothetical protein HNE_1884 [Hyphomonas neptunium ATCC 15444] gi|114740683|gb|ABI78808.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 1017 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 262/1054 (24%), Positives = 435/1054 (41%), Gaps = 82/1054 (7%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 P + TIAP + F +E+ AL T + P LA IYVP +R+ + L Sbjct: 10 DAPRIRTIAPGTAFVKELARALAAETSLA------TKPDALADAIIYVPNRRSARALSLA 63 Query: 64 FIEITGKKSTILPIIKSLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G+++ + P I++LGD+ E PP+S ++L LA L+ + Sbjct: 64 LYDAAGEQTILPPDIRALGDLDSGEPPPIAEQALSGAAPPLSGAKQLGVLATLVRHYYQ- 122 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE-TEEKKWEDLHALKNEKYGMWW 181 + + + PA+A+ A+ L +++ +E W L L W Sbjct: 123 -----------NAMGTELPPASALSAARELGRLLEQAAMSENADWSKLETLSLGDMAAHW 171 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIP 240 +ADFLKI ++ W E L E AS P ++ RA A+H GP+IIAGSTG+ P Sbjct: 172 SRSADFLKIVTELWPEWLAEHRASDPYKERLRAARALADHWRDAPPAGPVIIAGSTGATP 231 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 LM V + P G IVLPGLD + W ++ + HPQ +L + L Sbjct: 232 PGRILMRAVLDLPQGLIVLPGLDTLLNDKQWESVIKA-----------PGHPQNTLIRTL 280 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSM--VISKSFLPPDTSDMRNTDILENKIPN------- 351 L E V +S + R+ +I ++ P + + + E + Sbjct: 281 RALGRAPESVAPWPGISEDGPARARVRLIHEALAPAEETADWRATLEELAAASNQPIEEF 340 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 ++ + +++ NE EA + A+ +R +L+ + +AL+T D LARRV L R+GI Sbjct: 341 VRDGLTGLSIANTPNEAAEAEAAALLMRETLEREGQTAALVTPDAGLARRVSALLGRWGI 400 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 ++ SA +PL T S++ + +A ++KHP + L Sbjct: 401 HVPPSAPVPLGRTQAGSLIGLCARWAADPGEPAVLAAVLKHPFVRKKMDSG-------LL 453 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 +L LRG + + DL + R H S ED++ A+LLV + + + Sbjct: 454 DLYFLRGPRRWKSLDDLAHSIDIR--------HKLEPHSPFKREDQDEAILLVQRLSEIM 505 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + + + + L + P W E+G S+L ++ Sbjct: 506 EESGADFSILDGVTADAAAKRVADLAGAISET---------PMPWAGEDGAGASNLLQRL 556 Query: 592 IETGSCI-KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 E G + + + + D++ V+ + L I G LE+RL + D LIL GLN Sbjct: 557 AELGPFLGEMSPEAFADLVDAESSNLPVQTGEPEHPRLSIWGPLEARLQSADRLILAGLN 616 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 E VWP+ + FL R ++ L L E+ +G +AHDF H++ + R ++ P+ Sbjct: 617 EDVWPEKPPADAFLPRRFRAPLGLNDPEERMGLSAHDFAQLAAAPHVVMLSAARRDDSPS 676 Query: 711 IASRWLQRLLVLGGTDF----FDNLKKRGQCYLDWTRKLDY----TTKQPHYKRPKPFPP 762 + SRW+ RL L F + LK LDW L T P P Sbjct: 677 VESRWVWRLRTLAEGAFGDRTAELLKGETGALLDWVSALQTRGVGTLPADFSAEPTPRKR 736 Query: 763 LEAQPR-TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 A+ S + + +L DPY+++A +L L + RGT H + K Sbjct: 737 TPAEWPTRLSVTRVDRLQRDPYSIWAESVLGLRQVDVLGAPLASNLRGTAIHAALDAFEK 796 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + + K+ + L++ + E E+ IW ++ +LE + + Sbjct: 797 EGVAKDAGSLLELIRVELARTGEPESSWAGRLAIW----QDVADWYLEWRASRDIGGKFV 852 Query: 882 -FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 V + I L+ ADRI+ +G + I D+KTG P + D Q+ L+ Sbjct: 853 REVRGEISVEIAGHPFELSATADRIERTATGELVIVDFKTGQPPTDKAIDAGYDQQMPLQ 912 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN-DKKKYSADELSEKSLKNLIEIVT 999 A G F + VA L Y+ ++ + + I + +EL + + +V Sbjct: 913 AIIASKGGFKNVRAAPVAALEYVAIRGRPEARRIAESKNSPKTLEELIAAAADGYVRLVA 972 Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 ++ E F S R+ Y+ LAR AEW Sbjct: 973 AYRDPEAVFASAPRVQFVKYDYG-YNLLARRAEW 1005 >gi|218682570|ref|ZP_03530171.1| double-strand break repair protein AddB [Rhizobium etli CIAT 894] Length = 898 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 345/927 (37%), Positives = 481/927 (51%), Gaps = 47/927 (5%) Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 NKLPDI++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L L Y W Sbjct: 1 NKLPDIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSELTKLDTGDYAAW 60 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKGPIIIAGSTGSI 239 W L A+FL+IAS +W ERL EL SSP ++ A++RAEA L GPIIIAGSTGS+ Sbjct: 61 WQLTAEFLQIASAFWPERLSELGKSSPARHRNAILRAEASRLSATKPAGPIIIAGSTGSV 120 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 PATA L++ VAN P G IVLPGLD +P W + + +N +HPQY L+ L Sbjct: 121 PATADLIAAVANMPEGVIVLPGLDLSMPEKDWQMVAPEPAPGQHANPASRSHPQYGLSSL 180 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L L + R DV L ++ R+ V+ + + Sbjct: 181 LKRLKLTRADVTLLDRPEADLERRAEVL---LSGAHAIGGDQRLGGMEERAAWAGSVFSL 237 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 AD R+ A D + ++ T + RR G Sbjct: 238 RRCFADRSRQRA--------RGSDRDCHRAPACTGEAGTGRREPGGSDHAGP-------- 281 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 A ++HP +FG A A + A Sbjct: 282 ------------------QSRPAGDGRAFPLRHPRRRFGGHTACGDAAGYAAAIAAGSSA 323 Query: 480 KNSYDIMD--LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 D + +E +LA + + L+ + Sbjct: 324 AAGRSGGDRLAAQTSAGPLRPGPRRIDFQALAPDAAEAAYDLARRVTRATEPLASALLRH 383 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + ++S+W + T L+ V D L +LW E G L++L ++I+T Sbjct: 384 RPEDRGRTVSFTLSEWAERTGRSLEAVAADSRGNLADLWSGEAGDALAALLGEVIDTDGQ 443 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 I+A+ +WIDI+ L G VKP+ LFI GTLE+RL + DTLILGGLNEG WP Sbjct: 444 IEADGPQWIDIMAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGTWPGQ 503 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 TA NPF+ R+M++++ L+ E+ IGQ AHDFEMANGTRHLIY+RSLR+ + PT+ASRWLQ Sbjct: 504 TANNPFIPRMMKTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRSLRQGSTPTVASRWLQ 563 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RLL L G F LK RG +L W +D Q +RP P PP+ QP +YSFSE+ + Sbjct: 564 RLLALAGEAFESELKGRGNRFLRWAALIDRDEAQAPAQRPSPKPPVALQPTSYSFSEVGR 623 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DPYA+YARRIL+LD + F +DP +RGTL+H II I++ TP+ M++ Sbjct: 624 LRRDPYAIYARRILRLDPVDAFNRDPGAAERGTLYHKIIDRFIREAHVAGTPDAAAAMER 683 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 I+ F+ E+LPPHID +WR F ++ +FLE E + + I K + + +E+I I Sbjct: 684 ILSELFDMEHLPPHIDAVWRPRFRAVARAFLEWEAERRPGIRKTLTEVRGGVELEAINIR 743 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 LTG ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL AG+F Sbjct: 744 LTGVADRIDVTGPNAADIIDYKTGYNPSPAQARVLLDPQLALEAAALSAGAFRDAGSLVP 803 Query: 958 ANLFYIRLKQKFKI-------DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 +L Y+RL+ + + K SA +L+E+SL L++ V LLQ+GE+ F S Sbjct: 804 QDLLYVRLRPGRRFQVDTVNNESAARSDKTKSAMDLAEESLDQLVKFVGLLQSGEKGFTS 863 Query: 1011 HLRLSEKSNIQSEYDHLARVAEWREEY 1037 L +++ + +YDHLARV+EW Sbjct: 864 RLIPAQQFDFGGDYDHLARVSEWSTAE 890 >gi|197103667|ref|YP_002129044.1| hypothetical protein PHZ_c0201 [Phenylobacterium zucineum HLK1] gi|196477087|gb|ACG76615.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 1001 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 264/1049 (25%), Positives = 438/1049 (41%), Gaps = 77/1049 (7%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P F I PF ++ L + P L+ + +PT+R + + F+ Sbjct: 10 PRWFNIPAHRPFAEDLARGLYEALADDG-------PEALSDALVLLPTRRGARAVADAFV 62 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLP 124 G ++ + P ++ LGD+ + + + +L + ++R EL RL+ LP Sbjct: 63 RAAGGRAVLPPQMRPLGDLEAGEPPFEPGDLALDLPAAIDPLRRRFELTRLVAGHWRLLP 122 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLL 183 ++ + A+ LA L +D ++ EE + E L L W + Sbjct: 123 GRE------------LTASAALELADALGAFLDSLQIEEAEAGEKLAGLVEADLAEHWRV 170 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPAT 242 + +FL+ A W RL EL ++ L+R A+ + +G ++ AGSTG+ PAT Sbjct: 171 SREFLETALTEWPRRLAELGLVDVSERRVRLLRRLADVWASRPPQGVLVAAGSTGTAPAT 230 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 A L++ +A P GA+V+PGLD + + W + HPQ +L +LL Sbjct: 231 ADLLAVIAAAPRGAVVVPGLDDSLAESAWREVD-------------EQHPQGALRRLLAR 277 Query: 303 LDIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMR-------NTDILENKIPNI 352 I R+ V+ R VI+++ PP + + + I Sbjct: 278 TGIDRKHVEVWPAALAHQTQGRWRRRVINEALRPPRATADWLHAIEQLRAEADAEGLDPI 337 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 + ++L+ A E E A A+ LR +L+ +K +AL+T D+ LARRV +L R+G+ Sbjct: 338 AEGLKGLSLVSARAEEEAATVAALLLREALETPEKTAALVTPDQVLARRVTAKLARWGVV 397 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D SAG PL+ + + A + + L+KHP + G L+R ++ LE Sbjct: 398 PDSSAGEPLAGCRCGVLAGLVARAAVDPLAPVTLLALLKHPYVRLGLDGDDLARRRDVLE 457 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 LRG + L++ + ++ + Sbjct: 458 RHGLRGARPW-TWAGLRARLAEKGRGLDALP--------------------------LVD 490 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L + + C +++ + ++ + LW G+ +S L + +I Sbjct: 491 RLEDLLSALQAACAEGPVAEAARAVTAAMEALAAGADGSTGELWAGHGGEAMSRLLAGLI 550 Query: 593 -ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ETG +A + D+++RL++GE+V+ L ILG +E+RL+ D L++ GL E Sbjct: 551 HETGGVPPVSARGFADLLSRLMEGESVRAGGATHPRLRILGAIEARLVRADRLVVAGLEE 610 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GVWP+ +PFLSR M+ L L E+ +G +AHDF A +I S R P + Sbjct: 611 GVWPRGAPLDPFLSRPMRRTLGLPPPERRVGLSAHDFAQAACAAEVILLHSERREGQPAV 670 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 SRWL RL L + L W R LD +RP P PP+EA+PR Sbjct: 671 KSRWLWRLETLARGAAVE--IPGRPEALAWARALDAPDDYRPARRPAPCPPVEARPRELF 728 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + ++ L DPYAV+AR IL L + + + RGT H P+ Sbjct: 729 VTRVETLTRDPYAVWARDILNLRPLERPDEPVEARARGTAIHAAFERFALDHPRDLPPDA 788 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--M 889 + + + EK +P L + + E E + ++ I V + + Sbjct: 789 AAIFEAMYVEELEKAGMPREALARESALAREAAAWVAELEARRRADGRAIHVEKTGRLAI 848 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 ++ + L ADRI+ G+ I DYKTG P ++ PQL+L AA L G F Sbjct: 849 RVDGHEVVLGAKADRIEADPQGYGHILDYKTGRAPSQKVVDAGFSPQLTLTAAILAHGGF 908 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 I L Y+ + + + E +E++L ++ +QP++ Sbjct: 909 DAIGPLVPGELVYLEVTGRRPAGREEVRAGVGESAEAAERALDGARRLLARYFRPDQPYV 968 Query: 1010 SHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 S S+YDHLARV EW + Sbjct: 969 SRTAPQFVKTYASDYDHLARVFEWSTSGE 997 >gi|162146538|ref|YP_001600997.1| hypothetical protein GDI_0714 [Gluconacetobacter diazotrophicus PAl 5] gi|161785113|emb|CAP54657.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus PAl 5] Length = 1014 Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats. Identities = 257/1055 (24%), Positives = 416/1055 (39%), Gaps = 72/1055 (6%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V TI P PF + +P I +P++RA + L F+ Sbjct: 4 VVTIPPHVPFLDAVAT--------RWMAEIADDPQRSGDGLILLPSRRAARALTEAFLRH 55 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 + +LP I +G + E + +L P V ++RL L RLIL + D+ Sbjct: 56 ADGRPMLLPRIAPIGSLDESALALSGQEALDLPPAVEPLRRLATLTRLILQAGDAFGDV- 114 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186 + A LA+ LAD++D E E E L A + W L Sbjct: 115 ------------RTIDQAWPLAQALADLMDDAEWAECDLAERLPAAAEGDFAEHWHLTLR 162 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATA 243 FL I + W L E +P Q+AL+ A+A + G T ++P+ Sbjct: 163 FLSIVTGIWPAWLAEEGVMNPAARQVALLHAQARRWHASPLPGGERLWAVGFTDAMPSVL 222 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 ++ V P G +VLPG+D + A W + + HPQ +A+LL + Sbjct: 223 AVLDAVLAMPGGRLVLPGVDLSLDEATWTALPD-------------GHPQAGIARLLAGV 269 Query: 304 DIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 R D+ + G+ S + + + + + E ++ Sbjct: 270 GRNRADLAQWGDPSGDAGSGDAGAACPVDRGAVLARALLPAAALGEWLRDTTPVAMDGLS 329 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 ++ A +++EEA +IA+ LR ++ E ++AL+T DR LA RV +EL R+G+ D SAG P Sbjct: 330 VLRAADQQEEAAAIALLLRQAIAEPGHRAALVTPDRGLAGRVAVELARWGVVADDSAGEP 389 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + L ++ A +A+ +L+KHPLA G + LE LRG Sbjct: 390 LGATPPAIFLRLVVQAATGGLSPVALLSLLKHPLAACGLSPGACRASARLLERALLRGPA 449 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 I L+ + H + E VD + +C+ PL+T Sbjct: 450 PRPGIDGLRDRLAVARDDA-------HGALADRPDAPEDLAGFVDRVERCLAPLLTLVAA 502 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ + LW E+G L + +I + A Sbjct: 503 PAPGPVADLLAGLVEAAEALATTDDRAGAD---RLWAGEDGNALGQHLAALIAFCDVLPA 559 Query: 601 NAIEWID-IITRLIDGETVKPKI--------EKSSTLFILGTLESRLLNFDTLILGGLNE 651 +D ++ + G+TV+ + +FI G +E+RL +T++LG L E Sbjct: 560 QGATILDGLLAASMAGQTVRSRRGLRGRDATALHPRIFIWGLMEARLQAVETMVLGALVE 619 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT 710 VWP T P++SR M++ + L + E+ IGQAAHDF A ++ + R + PT Sbjct: 620 TVWPPATDPGPWMSRPMRARVGLPSPERAIGQAAHDFVACACAAPRVVLSVPGRRDGAPT 679 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769 + +RWL RL L W +LD P P P A Sbjct: 680 VPARWLVRLDAFLAGRDQA---LAAHPALSWLSRLDRPVDAPRPVAPPRPRPPLAARPRA 736 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + +EI+ + DPYA++AR IL L + ++ D D GT+ H + ++ + + + Sbjct: 737 LTITEIETWMRDPYAIHARHILGLRRLKEIEEPADAADYGTIVHAALDRWFRQPVERRSA 796 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP 886 ++ L P + W +I+ ++ E Q+ Sbjct: 797 AGEAGLRATFAEELAAARLRPALAAWWAPRLARIAAWVVQAEAARASGQAGAVVTRTERS 856 Query: 887 AKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + + L G ADRID G + + DYKTG P++++ QL LEAA Sbjct: 857 GTVELSGLPGGPFVLRGRADRIDRNGDGGLTLIDYKTGTLPRRKSVFAGWSSQLVLEAAM 916 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + G+F + L Y RL + D+L S NL ++ + + Sbjct: 917 AERGAFGAELAGRARELLYWRLTGGPEAGEDLPVATGQELDDLIAASWDNLRGLIAMYDD 976 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 QP++SH E +Y LARVAEW D Sbjct: 977 PAQPYLSHPHPEEGPRFA-DYARLARVAEWSAARD 1010 >gi|209543464|ref|YP_002275693.1| double-strand break repair protein AddB [Gluconacetobacter diazotrophicus PAl 5] gi|209531141|gb|ACI51078.1| double-strand break repair protein AddB [Gluconacetobacter diazotrophicus PAl 5] Length = 1014 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 257/1055 (24%), Positives = 416/1055 (39%), Gaps = 72/1055 (6%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V TI P PF + +P I +P++RA + L F+ Sbjct: 4 VVTIPPHVPFLDAVAT--------RWMAEIADDPQRSGDGLILLPSRRAARALTEAFLRH 55 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 + +LP I +G + E + +L P V ++RL L RLIL + D+ Sbjct: 56 ADGRPMLLPRIAPIGSLDESALALSGQEALDLPPAVEPLRRLATLTRLILQAGDAFGDV- 114 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAAD 186 + A LA+ LA+++D E E E L A + W L Sbjct: 115 ------------RTIDQAWPLAQALAELMDDAEWAECDLAERLPAAAEGDFAEHWHLTLR 162 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---KGPIIIAGSTGSIPATA 243 FL I + W L E +P Q+AL+ A+A + G T ++P+ Sbjct: 163 FLSIVTGIWPAWLAEEGVMNPAARQVALLHAQARRWHASPLPGGERLWAVGFTDAMPSVL 222 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 ++ V P G +VLPG+D + A W + + HPQ +A+LL + Sbjct: 223 AVLDAVLAMPGGRLVLPGVDLSLDEASWTALPD-------------GHPQAGIARLLAGV 269 Query: 304 DIKREDVKRLGNVSNEM---YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 R D+ + G+ ++ + + + E ++ Sbjct: 270 GRNRADLAQWGDPPHDAGSGDAGMACPVDRGAVLARALLPAAALGEWLRDTTPVAMDGLS 329 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 ++ A +++EEA +IA+ LR ++ E ++AL+T DR LA RV +EL R+G+ D SAG P Sbjct: 330 VLRAADQQEEAAAIALLLRQAIAEPGHRAALVTPDRGLAGRVAVELARWGVVADDSAGEP 389 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + L ++ A +A+ +L+KHPLA G + LE LRG Sbjct: 390 LGATPPAIFLRLVVQAATGGLSPVALLSLLKHPLAACGLSPGACRASARLLERALLRGPA 449 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 I L+ + H + E VD + +C+ PL+T Sbjct: 450 PRPGIDGLRDRLAVARDDA-------HGALADRPDAPEDLAGFVDRVERCLAPLLTLVAA 502 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ + LW E+G L + +I + A Sbjct: 503 PAPGPVADLLAGLVEAAEALATTDDRAGAD---RLWAGEDGNVLGQHLAALIAFCDVLPA 559 Query: 601 NAIEWID-IITRLIDGETVKPKI--------EKSSTLFILGTLESRLLNFDTLILGGLNE 651 +D ++ + G+TV+ + +FI G +E+RL +T++LG L E Sbjct: 560 QGATILDGLLAASMAGQTVRSRRGLRGRDATALHPRIFIWGLMEARLQAVETMVLGALVE 619 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT 710 VWP T P++SR M++ + L + E+ IGQAAHDF A ++ + R + PT Sbjct: 620 TVWPPATDPGPWMSRPMRARVGLPSPERAIGQAAHDFVACACAAPRVVLSVPGRRDGAPT 679 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769 + +RWL RL L L W +LD P P P A Sbjct: 680 VPARWLVRLDALLAGRDQA---LAAHPALSWLSRLDRPVDAPRPVAPPRPRPPLAARPRA 736 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + +EI+ + DPYA++AR IL L + ++ D D GT+ H + ++ + + Sbjct: 737 LTITEIETWMRDPYAIHARHILGLRRLKEIEEPADAADYGTIVHAALDRWFRQPAERRSA 796 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP 886 ++ L P + W +I+ ++ E Q+ Sbjct: 797 AGEAGLRATFAEELAAARLRPALAAWWAPRLARIAAWVVQAEAARASGQAGAVVTRTERS 856 Query: 887 AKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + + L G ADRID G + + DYKTG P++++ QL LEAA Sbjct: 857 GTVELSGLPGGPFVLRGRADRIDRNGDGGLTLIDYKTGTLPRRKSVFAGWSSQLVLEAAM 916 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + G+F + L Y RL + D+L S NL ++ + + Sbjct: 917 AERGAFGAELVGRARELLYWRLTGGPEAGEDLPVATGQELDDLIAASWDNLRGLIAMYDD 976 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 QP++SH R E +Y LARVAEW D Sbjct: 977 PAQPYLSHPRPEEGPRFA-DYARLARVAEWSAARD 1010 >gi|148555592|ref|YP_001263174.1| double-strand break repair protein AddB [Sphingomonas wittichii RW1] gi|148500782|gb|ABQ69036.1| Double-strand break repair protein AddB [Sphingomonas wittichii RW1] Length = 991 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 254/1047 (24%), Positives = 400/1047 (38%), Gaps = 88/1047 (8%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P VFTI F + L+ +PL LA + VP RA + + F Sbjct: 3 RPAVFTIPAHRAFADALAAGLIARH--------GPDPLGLARTVVLVPNNRAARAISDAF 54 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-------LNPPVSNIQRLLELARLIL 117 + +LP + ++GD ++ LL + + P + ++R + LARL Sbjct: 55 VRRAEGG-LLLPRLVAIGDPELDERLGGLLDPIDADAEEEPIPPAIDPLERQMILARLTA 113 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EK 176 R D PI AI LA L +D + E+ L L + Sbjct: 114 EARQAAGD-------------PIDGGEAIRLAGELGRTLDQMLIEQIPAARLRDLVALPE 160 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGS 235 W + L W L + L+ A + G +I AG Sbjct: 161 LSEHWQRSLAMLDTILTRWPAELAARGRIDLAERRNRLLDRVARRWRHRPPPGAVIAAGI 220 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQ 293 + + PA ARL+ VA P G +VLPGLD A W + T + +HPQ Sbjct: 221 SSTTPAVARLLGVVARLPEGMVVLPGLDTVSDEAEWRALGPHETGEDGARPPRPVESHPQ 280 Query: 294 YSLAKLLDFLDIKRED--VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 Y+L +LLD +D+ R + R G + R+ I+ + P +D + +P Sbjct: 281 YALKRLLDRMDVGRGEVATWRWGGGRDARSVRARAIANAMAPAAFTDKWHR------LPP 334 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 ++ S V IE N EEA IA+ALR +++ + +AL+T DR LARRV L R+GI Sbjct: 335 AERRLSGVRAIELANPAEEAQVIALALREAIETPGRTAALVTPDRVLARRVTAHLARWGI 394 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 D SAG PLS T ++L ++ A + + + L+KHPL + G L Sbjct: 395 VADDSAGTPLSLTPAGTLLLAVAEAAAEGFAPVPLLALLKHPLVRRGAARGAWLDGARKL 454 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 ++ RG + + + + + A+ D + + Sbjct: 455 DIAL-RGPRPPAGLDGIA--------------RYLRDGDGHARRARAPAIDWWDEVRPLL 499 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 PL + + ++ + D + E + Sbjct: 500 EPLEKAFSARTLAELLAALRETISTLADDAGWSGPDGRAAADLVAELEAWAPI------- 552 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + + L+D V+P L I G LE+RL + D ++LGGLNE Sbjct: 553 ----GPAAFDPAGLAPTLRLLMDAVAVRPPQGGHPRLSIWGLLEARLQHADLMVLGGLNE 608 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GVWP + +P+L+ ++++L L E IG +AHDF MA G LI TR+ R+ PTI Sbjct: 609 GVWPALPSPDPWLAPRIRAELGLPGLETRIGLSAHDFAMALGAPELIVTRARRDARAPTI 668 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ASR+ RL + G R +W +D + RP+P PP+ +P + Sbjct: 669 ASRFWLRLEAMTGG------ITREHRLPNWAAAIDRPADRRFIARPEPAPPVADRPNVIA 722 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + + +L DP+A YA +L+L + DP RGT H + +K+ Sbjct: 723 VTRLDRLQADPFAFYADAMLRLRPLDAVDADPTPAWRGTAVHAVFEAWMKQ-----DDCD 777 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMA 890 + ++ P + +W + + + I + ++ Sbjct: 778 PDRLLPRAEAMLRDMAAHPVMQALWEPRLIEALRWVADRMREERAQGRRPIAAELDGRVE 837 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + GI LTG DRID L G + I DYKTG P + QL L G F Sbjct: 838 VA--GITLTGKVDRIDRLADGTLAIVDYKTGKPPSAAQVEAGYAMQLGLLGLIADRGGFD 895 Query: 951 QIDCRKVANLFYIRLKQKFK----IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 I Y L + + K + + + L V G + Sbjct: 896 GI-EGTPLAFEYWSLAKDRDAFGQVRSPVGGKSHVAPQDFVAHAAAILASAVERWLTGTE 954 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEW 1033 PF + L ++YD L R+ EW Sbjct: 955 PFTAKLAPEYSP--YADYDQLMRLDEW 979 >gi|332185717|ref|ZP_08387464.1| double-strand break repair protein AddB [Sphingomonas sp. S17] gi|332014075|gb|EGI56133.1| double-strand break repair protein AddB [Sphingomonas sp. S17] Length = 984 Score = 438 bits (1127), Expect = e-120, Method: Composition-based stats. Identities = 256/1051 (24%), Positives = 408/1051 (38%), Gaps = 97/1051 (9%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 ++P + TI F ++ L R +PL LA I +PT R ++ + Sbjct: 5 RRPRLHTIPAHRGFADALVAGL--------MRRTGGDPLTLAQGMILLPTNRGVRAVTEA 56 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ----RLLELARLILIW 119 F+ +G ILP + +LGD + L + P R + LARL+ Sbjct: 57 FVRASGGG-LILPRMVALGDPELGEAAGSALDPADAEAPPPPAIAPSARRMILARLVEEE 115 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYG 178 R + P++ A A+ LA +LA +D + EE + +L AL + Sbjct: 116 RKR-------------AGQPVTAAEAVRLAGDLARTLDQMLIEEVEPAELAALDLGPELT 162 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTG 237 W A + W L + + L G + AG T Sbjct: 163 EHWQAALQTFSVVLDRWPAILARMGRIDAARRRTLLFDRIVTRWRDQPPAGFVCAAGVTD 222 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN--TTYSTHPQYS 295 + PA AR++ V+ P G++V GLD +P W+ + + + + THPQY+ Sbjct: 223 TAPAVARVLRCVSEMPGGSVVFAGLDLTMPAEEWDALGPHKPDPVTGRIRRSIETHPQYA 282 Query: 296 LAKLLDFLDIKREDVKRL--GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L LLD + + R++V G + R I+ + P D + +P Sbjct: 283 LKLLLDRMGVGRDEVTIWRGGGDYDAGAARGRAIANAMAPADFTGKW------TDLPAED 336 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + S V+ IE EEA +IA+ALR +++E + +AL+T DR LARRV R+ I I Sbjct: 337 RRLSGVSTIELATPAEEAQAIALALREAVEEPGRTAALVTPDRALARRVAAHCRRWNILI 396 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D +AG PLS L + L L A + + + L+KHPL +L+ Sbjct: 397 DDTAGRPLSILLPGTFLLQLAEAAAQHFAPLPLLALLKHPLIHGDMERVDWLDGVRSLDR 456 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 RG + + + + + + D+ A + + P Sbjct: 457 GL-RGPRPAPGLDGIAAHIA----------------------DRPTAAGFWAKVAPMLQP 493 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + G ++ C Q +C D LW G+ + S E Sbjct: 494 VGRTFGD-----GAQTLRGLLACLRECGQALCGD------ALWTGPAGRAAAEFLSGYEE 542 Query: 594 TGSCIKA--NAIEWIDIITRLIDGETVK--PKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + ++ L+D V+ P+ + L I G +E+RL D +I GL Sbjct: 543 QADHGPVRIDPADLPGLMRSLLDEIAVRAIPREGQHPRLAIYGPIEARLQTADLMIAAGL 602 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 NEGVWP A +P+L+ +++ L L E+ IG AAHD A G I TR+ R+ + P Sbjct: 603 NEGVWPGRPAPDPWLAPRIRAQLGLVGLEQRIGIAAHDLAQAMGAPRAILTRARRDASGP 662 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 T+ASR+ RL + G F + W +LD RP P PP +P Sbjct: 663 TLASRFWLRLQAMAGERFEGH-----PTLAAWAERLDRPDAYTPVDRPAPKPPARLRPTV 717 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +E+ +L DPYA YARR+L+L + DP RGT H+I+ K+ Sbjct: 718 ISVTEVDRLKADPYAFYARRVLRLTPLDPVDADPSAAWRGTAVHDILEAWWKE-----DA 772 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 ++ + + P + +W+ + + + K Sbjct: 773 CAVEALRPRALAMLRDQRTHPMMRALWQPRLIEAIDWIAAEVAAKAAEGRHVLS-AEGKG 831 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + G+ LTG DRID G + + DYKTG P ++ QL L + G F Sbjct: 832 EAKLAGVTLTGRFDRIDRTPDGGLVVIDYKTGKPPSAVAVREGFSLQLGLLGLIAERGGF 891 Query: 950 SQIDCRKVANLFYIRLKQKFK-------IDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 + K Y L + + + + DE + N + Sbjct: 892 EGV-AGKAGGFEYWSLGRSREGLGYIATPVDPEGKRDRIRTDEFVAIAAANFADAAGQWL 950 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 G+ PF + L +EYD L R EW Sbjct: 951 TGDAPFTAKLVPEYAP--YAEYDQLMRRDEW 979 >gi|304320183|ref|YP_003853826.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis HTCC2503] gi|303299086|gb|ADM08685.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis HTCC2503] Length = 1015 Score = 435 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 255/1052 (24%), Positives = 405/1052 (38%), Gaps = 82/1052 (7%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P +FTI PF ++ L R +P LA +TIY+P +RA + L Sbjct: 17 PAIFTIPQGVPFLEALVAPL--------MRAFEGDPAGLADLTIYLPNRRAARRLIDHLA 68 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLL---SYNLNPPVSNIQRLLELARLILIWRNK 122 + ILP ++ LGD+ E+ + V + R L LA L+ + Sbjct: 69 ASAPTGTVILPQLRVLGDITEDDLMFSAPDMVADEEVPLAVDPMDRRLILAHLLAQRKAA 128 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM--- 179 D + S + + A LA ++D E L ++ E Sbjct: 129 EGDTAAPARMSAAASPDWP--SLLAGADALASVLDSFHREALPLSALLSMTPEDLAGRAA 186 Query: 180 -WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTG 237 W FL I ++ W L + Q LM A A+HL GP I+IAG+ G Sbjct: 187 DHWHEHLRFLSILAEAWPAILSKQGCIELSDRQTRLMTALADHLSATPDGPPILIAGALG 246 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + ATA LM +VA P GA++LPG S +HPQ + Sbjct: 247 ATEATAHLMESVAKSPRGAVILPGAMPMAADQ--------------STLLPPSHPQAAFQ 292 Query: 298 KLLDFLD--IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS-DMRNTDILENKIPNIQK 354 + L + + +++ +S + P + + D ++ + Sbjct: 293 RWLRRVGGGASVDLSPWDERMTDRKQATRAFLSLALTPAEETGDWHRRFADFRDAYSLDE 352 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 + ++ A EEA +A+ LR L+ K + L+T DR+LARRV +L ++ I +D Sbjct: 353 ALAPLSFATAGTPNEEADFVALLLREVLETEGKTALLVTPDRDLARRVCAKLRQWDIRLD 412 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 S G PL + + + + +D +A+A LV H L G R Sbjct: 413 DSGGTPLYGAYRGTYIRQWAHWLGAPDDPVALAALVAHGLFLRGLTRSDKERLARR---- 468 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 V R+ + + E L L+ + + Sbjct: 469 -----------------VDRRLRGMRPRDWQDTQRRLAGEGPSPLETELLQDLDAALRAF 511 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 T + I+D LW +++G+ L++ S +++T Sbjct: 512 QAATTQHERLRALIEIADRFAR-----------SADGDQLLWQDQDGEALAAQLSAMMQT 560 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + L+ G V L +LG +E+RL + D +IL GL EG W Sbjct: 561 AFLPDCPPAAFASLFEALL-GSAVIRTYGTHPRLTVLGLVEARLQSADRVILAGLTEGTW 619 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 PK T +PFL ++ L L T + +G++A DF +I RS + + P + SR Sbjct: 620 PKLTTADPFLPHNVRLALGLPTHDAEVGRSALDFVDHALGEEVILIRSEKSDRGPALPSR 679 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 WL RL L W L + P P P P S S+ Sbjct: 680 WLTRLYNLIEAAKQTEATDITGRLRGWVGALRHPASVDPALPPMPRPAAALLPARLSVSD 739 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 I QLI DPY+VYARR+L+L + ++P +RGTLFH + L K ++ T E+ Sbjct: 740 IGQLIRDPYSVYARRLLRLFPLDPLAQEPAERERGTLFHAVYERLAKVAPDRVTQEV--- 796 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEKIFVNIPAKMAI-- 891 + + P ++ + + +F + + + + F I ++ + Sbjct: 797 FAHALAETIDDCLYPSECHDLYAMMGQRAGKAFSVISQTQRRDGATATFAEIEGELTVMA 856 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 I L G ADRIDL G I DYK G P + +PQLS+ A AG F Sbjct: 857 GGRSIDLYGRADRIDLYPDGTYTIIDYKGGSAPTFKQ-DASFEPQLSVLAMMAAAGGFKD 915 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKY------SADELSEKSLKNLIEIVTLLQNGE 1005 + +V L Y + +K ++K ++ +NL ++T +G+ Sbjct: 916 LRRGQVRRLAYTPMLRKEAWSVPFTEEKVPWMVAGEDLKAHLLETAQNLNRMMTEFVSGQ 975 Query: 1006 QPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 F S LR KSN + +YDHLAR EW Sbjct: 976 FVFHSQLRP-FKSNSEGDYDHLARRREWAGMD 1006 >gi|326387826|ref|ZP_08209432.1| helicase [Novosphingobium nitrogenifigens DSM 19370] gi|326207872|gb|EGD58683.1| helicase [Novosphingobium nitrogenifigens DSM 19370] Length = 998 Score = 426 bits (1095), Expect = e-116, Method: Composition-based stats. Identities = 233/1056 (22%), Positives = 392/1056 (37%), Gaps = 96/1056 (9%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P V++IA F ++ L+ + F LA +T+ +P++RA++ + F+ Sbjct: 5 PQVYSIAAHRGFADALVAGLIPRYREDGFG--------LARLTLLLPSRRAVRAVTEAFV 56 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLSY------NLNPPVSNIQRLLELARLILIW 119 +G + +LP + +GD+ ++ L+ ++ P V + Sbjct: 57 RASGG-ALMLPRMAVVGDLDLDETLGPLVDPLPDDAGGDIPPAVDPT-----------LR 104 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN----E 175 L D+++ A + LA+ +A+ ID + EE E L Sbjct: 105 LLILADLLRIEVASETPDHVPGEAALLRLARGVAETIDRLLVEEVTPERLLDPAVIGLVG 164 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAG 234 W + W L E A + L+RA A P++ AG Sbjct: 165 DLAEHWKDSTRLFAKVLYRWRAELDERGACDAPERRNRLLRALARRWRETPPAHPVVAAG 224 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST---- 290 T + PA A L+ VA+ P GAI+LP LD + +W+ + Sbjct: 225 VTSAAPAVAHLLRCVADLPGGAIILPDLDLALDQEVWDALGHAGAPADDGAVFGRGDIVT 284 Query: 291 HPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 HPQY L LL+ + I R++V+ S RS IS FLPP S + + Sbjct: 285 HPQYHLKLLLNRMGIARDEVQAWHRAGPSAAPPARSRAISNLFLPPVASAIW------AR 338 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408 +P+ + + V ++ + + EE+++IA +R +L++ +++ AL+T DR LA RV L R Sbjct: 339 LPSEDRSLAGVRIMTSAHPGEESLAIAALVRRALEQPERRVALVTPDRGLAERVIGHLQR 398 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 + + D SAG PL T +L +L + + + L+ HPL + G Sbjct: 399 WNVGADDSAGRPLPQTAAGRLLLALAECWAERAAPVPLIALLGHPLVRAGEGRALWLDRV 458 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L P E + A L ++ Sbjct: 459 RRL--------------------------DLALRGPRPGPGLDGVGEALQRARYLERDLI 492 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + L ++D V + +C E Sbjct: 493 AWWESATALLAPLLAHAEPLPLADALAHLVEAAERLC-GEAIWAEADGRALAAFVEDWSG 551 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + + E ++ ID V+P S L I G LE+R+ D +I G Sbjct: 552 AAGDARLAGVLVDPAELPALLRDAIDQVAVRPPYGGHSRLAIYGLLEARMNRADLVICAG 611 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LNEG WP + +P L+ + L + + IG AAHDF A G+ ++ + +LR+ Sbjct: 612 LNEGTWPTAPSADPVLAPAVLRALGIPGPDFRIGLAAHDFAAALGSPEVVLSHALRDAAG 671 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 P + SR+L R+ + G ++W LD PH RP+P P E + Sbjct: 672 PAVPSRFLLRIRAMLGQSIQTET-----AAIEWASALDQADPVPHSPRPRPMPSAEQRRV 726 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + + + +L DPY YA IL+L + DP RGT H I+ K Sbjct: 727 DIAATALDRLRGDPYQFYASAILRLSSLDPLDADPTPAWRGTAVHAILEAWHKAGAPPG- 785 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA 887 + + + + P + +W + E + ++ Sbjct: 786 -----QLIVLAREALDAMSAHPLMRALWTPRLIEALEWIEEEQARLAGEGRTVAAFEQWG 840 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 + + G+ + G ADRID L G + I DYKTG P + QL L + Sbjct: 841 DITV--RGVKIKGRADRIDRLPDGTLAIVDYKTGSPPSPTMVAEGFALQLGLIGLIAERD 898 Query: 948 SFSQIDCRKVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIV 998 F+ + K Y L ++ + + DE + L + + Sbjct: 899 GFANLHG-KARRFEYWSLSRRRDGSGFGWCREPVHDGKGRSGVLRDEFLPLTDDYLHDAL 957 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 G +PF + L S+YD L R+ EW+ Sbjct: 958 DRWILGSEPFTARLNP--NLPGYSDYDQLMRLDEWQ 991 >gi|296283898|ref|ZP_06861896.1| helicase [Citromicrobium bathyomarinum JL354] Length = 977 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 231/1013 (22%), Positives = 386/1013 (38%), Gaps = 100/1013 (9%) Query: 52 PTKRAIQELRSEFIEITG---KKSTILPIIKSLGDVVEEKFTADLLLSY---NLNPPVSN 105 P+ RAI+ + F+ G +LP + ++GD+ ++ LL + P V Sbjct: 23 PSGRAIRTVSEAFVRHMGDEGGAGLLLPRMVTIGDLSLDEALGPLLDPLGADEIPPAVDP 82 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 L W + +++ +P P A+ +A+ +D + EE Sbjct: 83 T----------LRWLRLAALLAEEIGKGAPKGPP-----LFRQARMIAETMDRLLVEEIA 127 Query: 166 WEDLHAL----KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 EDL W + W L + + L A+ Sbjct: 128 PEDLLGDRVLDVVGSVAGHWQDSLRRFARVQARWLAELQAMGRVDSATRRNQLFAHAAKS 187 Query: 222 LMK-GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 PI+ AG T + PA ARL+ V+ P GA++LP LD + W+ + + Sbjct: 188 WRAEPPATPIVAAGVTSAAPALARLLRVVSELPQGAVILPDLDLALSDEAWDELGRAGQS 247 Query: 281 ITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYGRSMVISKSFLP 333 + THPQY L LL + + R +V++ ++ R+ +S FLP Sbjct: 248 DDADGERLGRHDAPTHPQYHLKLLLGRMGVNRGEVRQWHRRGLTAANPDRTHAVSALFLP 307 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393 P S ++P+ ++ + V L+E N EEA ++A+A+R L+E +K+ A++T Sbjct: 308 PQASKSWV------ELPSEKRRLAAVQLLETGNPEEEAQAVALAVRRKLEEPQKRVAVVT 361 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 DR+LARR+ L R+ I D SAG PL T L L I + + + + HP Sbjct: 362 PDRSLARRIVHHLRRWDIQADDSAGAPLCDTAAGRALLLLAQVIAERAAPVPLIAFLGHP 421 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 E D +D DR+ + + ++ + Sbjct: 422 FVGVAGAEDS---------------GGARADWLDALRRFEDRLRGPRPAPGLAPLRAIAA 466 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + D + + + PL+ + +++ + Sbjct: 467 KADVDA---WWGTVADRLAPLMERDEDAPLAELLGTLAQVLEEF-------------CGE 510 Query: 574 NLWFEEEGKTLSSLFSKII--ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 +W E+G+ L S + + + + E D++T ++ V+P + + Sbjct: 511 AVWGREDGRALGSFVDDLRQQASAAGTMIDPREVHDVLTDAMERVAVRPAYGGHPRVAVY 570 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 G LESR+ D +I GLNEG WP + +P L+ + L + E IG AAHD A Sbjct: 571 GLLESRMARADLIICAGLNEGTWPGGASPDPLLAPPVLRALGVPGGEFRIGLAAHDLAGA 630 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 G ++ TR+ + N P I SR+ R+ L G + + L Sbjct: 631 LGAPQVLLTRAALDANGPAIPSRFFLRIKALLGDLAKRHEES---ELPALVDALRDADPA 687 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 P Y P+P PP E + T S + + +L +DPY YA IL+L +P +GTL Sbjct: 688 PLYPVPQPCPPAEVRRVTISATALDRLRSDPYQFYANAILRLKERDPLDSEPSPAWQGTL 747 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H I+ E K+ + + H + P +W +E+E Sbjct: 748 AHAILEEWHKQG---------GALVDLATKHLGAMDAHPLTRALWEPRLMAALEW-IENE 797 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + V + G+ +TG ADRID L G I DYKTG P K ++ Sbjct: 798 VSSDPDRRIVAVEQKGRHLF--SGVEITGTADRIDRLADGSYAIVDYKTGGPPSKRMVEE 855 Query: 932 LIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKID----------CITNDKKK 980 QL ++ G+++ Y L + K D I N + Sbjct: 856 GFALQLGTLGLLVEEGAYADRGIEGVPTRFEYWSLGRDAKSDTGFGYVTTPLKIGNARTG 915 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 D+ ++ + L E + G+ PF + K + + YD L R+ EW Sbjct: 916 MEPDDFLPETRRYLAEALDTWILGDAPFTARPNPDLK--LYATYDQLMRLEEW 966 >gi|312113013|ref|YP_004010609.1| double-strand break repair protein [Rhodomicrobium vannielii ATCC 17100] gi|311218142|gb|ADP69510.1| double-strand break repair protein [Rhodomicrobium vannielii ATCC 17100] Length = 1091 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 245/1096 (22%), Positives = 418/1096 (38%), Gaps = 90/1096 (8%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + VF P PF + A+L+G L F P + ++ +YVP++ A+ L+ Sbjct: 14 AARGSAVFACPPHRPFLPALAAAILDGAL---FGGGEPEPHDIPALNVYVPSQAAVTPLK 70 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTAD-------------LLLSYNLNPPVSNIQR 108 ++++ +T LP I+ LGD A L + ++ PV +I+R Sbjct: 71 LALLDLSPCGATFLPRIRVLGDADPLDMFAAYAPHMDAGDALALLRDAVDVPKPVGDIER 130 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 + L+ + + L ++ +A +A ++A +ID E Sbjct: 131 RVHLSA--AAMKAARDIHSTRMEFGEQLFSGVTATSAAKIAADIASLIDDAHRERADLAK 188 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 + L ++ L+ K W + LM EA + + + Sbjct: 189 IDRLDRGHASGGEQISLQILRAVRKAWDAHKKRSRRLDREERRNRLMALEAAFI-RASDA 247 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 P+I+AGSTGS+ AT LM + AIVL GLD + A W I E Sbjct: 248 PVIVAGSTGSVAATMGLMEALGGRARSAIVLHGLDRALDDASWQAIAEH----------- 296 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG----RSMVISKSFLPPDTSDMRNTDI 344 HPQ+ L +LL L + R +V L V G R+ +S++ P T+ + Sbjct: 297 PEHPQHGLWQLLARLVVCRNEVSELETVRALPAGGDPIRAAFLSEAMRPASTTARWADYV 356 Query: 345 LENKIPNIQKC---------------------FSDVALIEADNEREEAISIAIALRMSLD 383 K + + L+EAD +EEA+ +A+ LR +L+ Sbjct: 357 AARKAEGSRDAGATARDVWADVSLCDAPRGTLAPGLTLVEADTSQEEAVVVALILRAALE 416 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + AL+T D L RV+ L +G+ + +P + ++ + K DF Sbjct: 417 DEAAHVALVTPDDALTARVRHALAAWGMASE----LPAAPRHAFALRVAATATSGKPEDF 472 Query: 444 MAIATL-VKHPLAKFGF-------------PEKYLSRAKNALELVALRGNKNSYDIMDLK 489 A+ L + P + + R ++L A R + + Sbjct: 473 TALLRLGLLEPRSAYLRQRESDLTEADPGADRDRFLRLAELVDLGAARQMWRPASMDGIP 532 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNL 548 + + + R+ E + A LL +L ++PL + L Sbjct: 533 AALARAQHAIASGEARHPAMRRIDAEAWDAARLLAGDVLDALSPLTENAADPASDAAPTL 592 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 W L + + G SL + + ++ Sbjct: 593 PFRRWVAAHDEALARLAAIGLAC-------DAGDDAPSLGDAFGVDAPSLALDINDYAAF 645 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 L GE L +L L++RLL+ D ++LGGLNEG WP+ +P+L+R Sbjct: 646 FAELARGEPTPAAGSPHPRLSLLSPLDARLLSADVIVLGGLNEGAWPQTPGPSPWLNRQD 705 Query: 669 QSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 ++ + L E+ IGQAAHDF +A ++ TR+ + N SRW+ R+ L Sbjct: 706 RAAIGLSPEERRIGQAAHDFASLAAAAPRVVLTRAKKANGSLARPSRWIARITTLARGTG 765 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + G +L+ R P+P PPL A+PR S + I+ +PYA+YA Sbjct: 766 RLAEIETGADWLEMARARRMPATVTPIAPPEPRPPLSARPRRLSVTAIETWFANPYAIYA 825 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 IL L + + D D+GTL+H + + ++ + + +D E+ Sbjct: 826 SFILDLKPLRRIGESHDARDKGTLYHAALNRFFEAYPDRVPDDAAARLVACLDRSAEEFG 885 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFAD 903 WR F + + F E + + + + + K+ + + +T AD Sbjct: 886 FDLDAAPFWRPRFARFAEWFAATEAQRRDGLRLLKSEVGGKLKLVAEGAAGPFEVTARAD 945 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 RIDL G + I D+KT N +A++ PQL+LE G+F+ + +L YI Sbjct: 946 RIDLGADGSLRIFDFKTSANAATTSARRG-APQLALEGMLAMEGAFAGLPAGGAPDLCYI 1004 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 I K ++E + L+ + + P+ R + ++ Sbjct: 1005 IASGGEPPGDIVTLK--VPSEEAIAAAKAGLLLRIARFDDEATPYAYEARAIFRDKADND 1062 Query: 1024 -YDHLARVAEWREEYD 1038 Y HLARV EW D Sbjct: 1063 PYAHLARVKEWSAAAD 1078 >gi|103485654|ref|YP_615215.1| helicase [Sphingopyxis alaskensis RB2256] gi|98975731|gb|ABF51882.1| helicase [Sphingopyxis alaskensis RB2256] Length = 991 Score = 386 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 255/1050 (24%), Positives = 409/1050 (38%), Gaps = 84/1050 (8%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M ++P +F+I F + L++ L L + +P+ RA + Sbjct: 1 MATRRPTLFSIPVQRAFADALAAGLIDRYA--------DGVLGLTEGIVLLPSNRARSAV 52 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLI 116 ++ F+ G ++P + +GD ++ A L + + L P + ++R L LA LI Sbjct: 53 QAAFVR-AGGAGLLMPRLAVIGDADLDENVALALDAVDMDAPLPPAIEPLRRRLLLAELI 111 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 + P++ A A LA LA +ID + EE L L Sbjct: 112 ERY-------------TPAGEPPVTGAAAFQLAGGLARVIDQLHYEEIPAAALVDLDLGA 158 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGS 235 + W + L++ +W + L + AL+ A ++ AG Sbjct: 159 FADHWRASLARLRLLVDHWPDVLAATGHIDRAARRNALLDRVAAAWRTAAPARFVVAAGI 218 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 T + PA ARL+ TVA+ G +VLPGLD + TA W + + S THPQY Sbjct: 219 TTAAPAIARLLRTVADMERGMVVLPGLDTAMATAEWEALGPTGPDPDRSARPLETHPQYH 278 Query: 296 LAKLLDFLDIKREDVKRLGNVSN--EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L LLD + I RE+V S RS +S F P D + +++ Sbjct: 279 LKLLLDRMGIAREEVAEWEARSPFDGPEARSRFVSLLFAPADYTARWQA------AGDLE 332 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + +A ++ +EA IA+ +R +++ + +AL+T DR LA R+ L R+GI + Sbjct: 333 AATAGIAGATFADDAQEAQGIALLMRHAVETPGRTAALVTPDRALAERIAAALARWGIAV 392 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D SAG PL+ T ++ LL + + +A+ L+ HPL + G P A L+L Sbjct: 393 DDSAGQPLARTPPGAL-AMLLAELAADFNPVALIALLAHPLVRRGEPRTAWLDAVRQLDL 451 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + L + + + + P Sbjct: 452 LLREPG-----------LAPGWAGVSARIAALAADRDARGHALAVELAPWWHQLGEAFVP 500 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L+ ++ L+ + W G+ L+ LF + Sbjct: 501 LLAPFAGP-----PVAPDRLLAALRQGLEWLTG------EAAWTGPAGRMLAELFDRWTL 549 Query: 594 TGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ ++ +L+ +V+P LFI G LE+RL D +ILGGL+E Sbjct: 550 ARGAGPARVAPADFPAMLGQLLGEASVRPPYGGHPRLFIWGLLEARLQRADLMILGGLDE 609 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 G WP T +P+L+ ++ + L E+ G AAHDF A G ++ TR+LR P + Sbjct: 610 GRWPAATQPDPWLAPGIRRLIGLPATERQQGMAAHDFAGALGAGEIVVTRALRSGGDPAV 669 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQPRTY 770 ASR+ RL L G L G D ++D +P P PP + +PR Sbjct: 670 ASRFWLRLAALAGDLPQPAL--DGVPLTDLAARIDLPADDIEPAGKPCPAPPADRRPRRI 727 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + + +L DP+A YA +IL L + PD RGT H + ++ N E Sbjct: 728 SVTAVDRLARDPFAYYANQILGLSPLAPLSAAPDPRWRGTRVHALFERWVRAGANAAAFE 787 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + L W + + ++A Sbjct: 788 AELAALR------DDPALDAIARAFWLPRIEPALRWAARQLIE-AEGRTALRAEAWGEIA 840 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 ++ GI LTG ADR+D L+ G + I DYKTG P + A +D QL L + G + Sbjct: 841 LD--GITLTGKADRVDRLRDGRLAIVDYKTGGAPNAKAAFDKLDNQLGLLGLIARRGGLA 898 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQN 1003 +D ++A L Y L+ K SA E + + L + Sbjct: 899 GVDAAEIAALEYWSLRPDRKAGGAGKISSTYGPRSDLKSAAEAVDHAADALAGLAARYLF 958 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 G+ PF S +YD L R EW Sbjct: 959 GDAPF-----APGDSATYGDYDQLMRRDEW 983 >gi|225630600|ref|YP_002727391.1| hypothetical protein WRi_008710 [Wolbachia sp. wRi] gi|225592581|gb|ACN95600.1| hypothetical protein WRi_008710 [Wolbachia sp. wRi] Length = 943 Score = 349 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 218/1095 (19%), Positives = 382/1095 (34%), Gaps = 223/1095 (20%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ + + L+ E R + + + +P KR + L + F Sbjct: 3 RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEIKVILPCKRDVIALLNAFKN 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +K ILP I SL ++ EE DL+L+ + +S I+R L L + IL W K D Sbjct: 53 YNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILEWNRKNNDN 108 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I LA +L ++D I+ + ++ Sbjct: 109 FP-----------------IDLAYSLPSLLDKIQYTQM----------AEFDEHSKKIES 141 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + + W + L +L + ++ + + L K II G L+ Sbjct: 142 FINLLIETWNKILKDLGVVDILEHKSDYINSMITSLQKDQ--HIIFVGI----GKDKSLI 195 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + P G I+LP L+ I W + +K H QY L LLD+L++ Sbjct: 196 KAIYDLPFGEIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKDLLDYLNVD 242 Query: 307 REDVKRLGNVSNE------------MYGRSMVISKSFLPPDTSDMRN------------- 341 R DV L + + +++++P ++ M Sbjct: 243 RRDVSFLPEACSPVLRHWDPENLTLNERTRWLYNRNWIPVSSTGMTPSTTQITCKLQCSY 302 Query: 342 ---TDILENKIPNIQKCFS--------------DVALIEADNEREEAISIAIALRMSLDE 384 P + F ++ +I D+ EEA ++ + +E Sbjct: 303 TKNQRAGMTGSPELDYVFDTTADLSKVSSGHIGNIEVITCDSREEEAQVTSLIIE---NE 359 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + +L+ D+ LA R L+R I + ++L + + + Sbjct: 360 GYENVSLVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSV 411 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 A+ +L+KH L FG+ ++ SR + E+ LR ++ L +++ I K H Sbjct: 412 ALLSLLKHRLVTFGYTQEEYSRILSEFEIEILR----NFSTNGLSD-IINAINAHKKLKH 466 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 KE +L++ + PL+ N ISD + C+ + Sbjct: 467 ------------KEDILLIISKLEIIFNPLLNI--------INCPISDVVATHLQCINVL 506 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKI 622 + F E + + + I+ + + I+T ++ E Sbjct: 507 SG--------INFSELNSEIGNFTCNFLNACEGIEIKCSLELYSQILTLFLEKEFFS--- 555 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + L + +IL G NE ++ L+ + + NL +A++ G Sbjct: 556 ------VASDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQG 605 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + TRSL LQRL +L LK+ Q Y DW Sbjct: 606 YFFYTLHNLFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWL 652 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 R L+ +P P P E + + S S I++LI +PY+ Y IL L + Sbjct: 653 RVLNTPECTVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDL 712 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 P + T+ HNI+ ++ + + I F + +W Sbjct: 713 NFKPSILEFSTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVR 761 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---------------------ESIGIHL 898 KI SF+E +E + + + I I L Sbjct: 762 LQKIIQSFVEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMTNRPQEILL 818 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 T DR++ L SG V I DYK G P E PQL L+A A++ + R+V+ Sbjct: 819 TARCDRVEYLPSGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----VTGREVS 873 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 L Y +L D ++ ++ +L + ++ + PFI+ + Sbjct: 874 ELAYWKLDYDKIKVISLRDYRQK-----MQEFQNDLPDFLSNYLSNSTPFIASPYFDKFL 928 Query: 1019 NIQSEYDHLARVAEW 1033 S Y L RV EW Sbjct: 929 RFNS-YKQLERVGEW 942 >gi|73666892|ref|YP_302908.1| hypothetical protein Ecaj_0263 [Ehrlichia canis str. Jake] gi|72394033|gb|AAZ68310.1| conserved hypothetical protein [Ehrlichia canis str. Jake] Length = 911 Score = 346 bits (886), Expect = 2e-92, Method: Composition-based stats. Identities = 196/1035 (18%), Positives = 375/1035 (36%), Gaps = 138/1035 (13%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR----AIQELRS 62 VF++ P+ F + F +D N ++V I VP + EL+ Sbjct: 3 KVFSVYPAESFLTVVAK----------FVFDVFN-DTFSNVIIIVPNQEDVELLCNELKL 51 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + K I SL D+ ++ ++ +S I++LL L I +W ++ Sbjct: 52 YFSDTVFGKI----KIMSLADIDQDLLVG----NHGSIKIMSPIRKLLLLMEFIKLWNSE 103 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + + ++ LA +++ I + +L L + + Sbjct: 104 NDEDYP-----------------LTMSYELATLLNEINVHCIELSNLENLFDCDLPVHCQ 146 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A FL SK W E L E + ++ + + E+L K + +I Sbjct: 147 KTAKFLFRLSKKWREVLKEEGVLDILEHRSLYINSLIEYLEKESLNSTVIFAGMAFDEFF 206 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + N I+LP +D I + W + H QY + +LD Sbjct: 207 INFIQALYKLSNTKIILPYVDMTICQSEWELLD-------------ECHYQYCIKNVLDV 253 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L I R+D+ LG+ S+ ++ S+ FL + ++ V LI Sbjct: 254 LMINRDDIIFLGSPSSSIFVNSVFNFNLFLEAYHRNEIQNY----------DDYNRVKLI 303 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 ++ +EA ++ ++ + + + T + L++R+ L + +D S L Sbjct: 304 TCVSDEDEAQIVSTLVK---ENSCNDLTIFTNNLLLSKRINSILDSQNL-LDKSDNSYLI 359 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + + +L + +++ +L+KHP + ++ + EL +R Sbjct: 360 LS----FVLYILEVAISNWNPISLLSLLKHPFVTLEYVKEDYEALVSDFELKVIR----C 411 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 Y D S +E + + I + PLV + Sbjct: 412 YSSCDFAS------------------IESNIKEHVPDLLFFWEKITSIMLPLVNVR---- 449 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 IS K +TC+ N+ + + + F+ + + + IK Sbjct: 450 ----YEKISSIVKAHITCMNNLLKG-----NTVVSLNDSNKIEEFFNSLKNSCNGIKIYG 500 Query: 603 IE-WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I+ + +I+ ++ L +I G NE + N+ N Sbjct: 501 IDLYYEILLSILRSNFFSENY---------KLSCLNLSKKKVVIFAGFNEINYGVNSF-N 550 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 L+ +++ L L + +K G A+ + T+SL+ S W++RL + Sbjct: 551 TLLNGWIRAKLGLPSIQKERGYFAYLLHSFFYADKIYITQSLKSFGKINEESVWVRRLKI 610 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQL 778 LG ++LK + L K Y RP P P L+ + S + ++ L Sbjct: 611 LGELYDIEDLKC-AMHLRTQDKSLFDDVKNLVYLRPNPNPELDKRLGAFNILSSTALETL 669 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + +PY Y IL + + D G + HNI+ + + NK+ + L++ Sbjct: 670 VKNPYVFYLSSILNILPCRGINEKFSMRDFGIIVHNILHKYL--LNNKSKCQCKDLVEIA 727 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + +K P ++ I F KI+ F E + I++I I S I + Sbjct: 728 VSELLDKYKNFPQVETILWPKFQKIAEQFFEMNLERDHYIDEIMTERFFSWKINS-NIKV 786 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 DR++ L+ G V I DYKTG P + I Q+ ++A +K I + Sbjct: 787 VSKCDRVECLRDGSVVIIDYKTGMIPSQSDINYGISLQMIIQALTVKQSLKKDI-----S 841 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 L Y ++ + + EL ++ +L +++ +PF + +S Sbjct: 842 GLMYWKMSSED-----MKIISIDNYVELMKQLEIDLEQLILNYVTFMKPFTASCDMS--- 893 Query: 1019 NIQSEYDHLARVAEW 1033 ++YD L R+ EW Sbjct: 894 -RYTDYDLLTRIKEW 907 >gi|148260454|ref|YP_001234581.1| hypothetical protein Acry_1454 [Acidiphilium cryptum JF-5] gi|146402135|gb|ABQ30662.1| Inactivated superfamily I helicase-like protein [Acidiphilium cryptum JF-5] Length = 959 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 242/1043 (23%), Positives = 403/1043 (38%), Gaps = 99/1043 (9%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 P+V I+ PF E+ A L+ + A +++PT+RA + + F Sbjct: 2 TPHVRFISADRPFLPELARAWLDEATRDGRDP--------ADGVLFLPTRRAARAAAAAF 53 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 ++ G I+P I + ++ +L +L P ++ +R LARLIL + Sbjct: 54 LDAKGG-PLIMPRIAA--IGAADEAALGILAGLDLPPAITAEERRAILARLILGMGGRDG 110 Query: 125 DIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 + A+ +LA E L + W Sbjct: 111 APTTLAAALLLADDLALLLDTAAQAEIDLA-------------ETLPGIVAPDLAEHWQR 157 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242 DFL I ++ W L E A P Q L+ A+AE P+ +AG + PA Sbjct: 158 TLDFLSIVTRTWPAILAERGAVDPAVRQRMLIDAQAERWRLTPPAHPVWLAGLAAAPPAL 217 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 RL VA P+G +VLPG D +P W+ + THPQ L +L + Sbjct: 218 GRLARVVAGLPHGCVVLPGFDPDLPDNAWSMLDH-----------TPTHPQAGLNRLAEA 266 Query: 303 LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + ++RE+V L + R ++ ++FLP + + Sbjct: 267 IGVRREEVAPLREGGATGRETRVALLRRAFLPTAPAAD-----------IAAASADGLWR 315 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 ++A +E++EA +IA+ LR +L+ + +AL+T DR LA+RV EL R GI D SAG L Sbjct: 316 LDAADEQDEARAIALTLRHALETPGRHAALVTPDRGLAQRVAAELERLGIRADDSAGERL 375 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + T + +L L A D + + L+KHPL G P Sbjct: 376 ADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLVNAGLPAGRC----------------- 418 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++ L DH + L T+ + Sbjct: 419 ----------------RALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADL 462 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600 + LS+ L + LW E G LS + I + Sbjct: 463 QVSLRPLSLGPAKTSPAGLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDI 522 Query: 601 NAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A E + ++ ++ ++ + + I G +E+RL DTL+LGGL EGV+P Sbjct: 523 EATELVPLLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEP 582 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQ 717 P+LSR M+ L + IG+AAHD + + +I + R P + SR+L Sbjct: 583 EPGPWLSRPMRRAARLPDDAERIGEAAHDLGILIASCDEVILSAPRRRGRAPAVPSRFLA 642 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 R+ + + W+ +LD T + RP+P PP A+P +YS S++ Sbjct: 643 RIDLALRGAGSALKQ---HPASHWSTRLDQPTLRIARPRPEPRPPARARPISYSISKVTT 699 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L++DPYA+YA +L L + + + D GT+ H+ + + + + P+ + Sbjct: 700 LLSDPYAIYAGEVLDLHTLNPLQAETDAALFGTITHDALKAVTRTPDWASAPDAAARLAH 759 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI 894 S + L ++ W +I+ +E E + + + I V +P + Sbjct: 760 AFTSELRGKRLRRALEAFWLVRLERIAEWIVEIERGRLADLGKADDIKVELPGEWRFGH- 818 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + G ADRI+ + I DYKTG P + + PQL +EA +AG F Sbjct: 819 -FTVKGRADRIERRGE-TLAIIDYKTGSPPADKAVEAGSAPQLPIEAVIAEAGGFPGFT- 875 Query: 955 RKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 KV L Y +L + + + + ++ + PF+ Sbjct: 876 GKVTELAYWKLSGGATEGETRALFGGNAGPLRAVIDAARTQIPALLAYYADPATPFLDAP 935 Query: 1013 RLSEKSNIQSEYDHLARVAEWRE 1035 K + ++R AEW+E Sbjct: 936 HPGRKP-YDQPFAGISRRAEWQE 957 >gi|326403647|ref|YP_004283729.1| double-strand break repair protein AddB [Acidiphilium multivorum AIU301] gi|325050509|dbj|BAJ80847.1| double-strand break repair protein AddB [Acidiphilium multivorum AIU301] Length = 959 Score = 343 bits (880), Expect = 8e-92, Method: Composition-based stats. Identities = 242/1043 (23%), Positives = 405/1043 (38%), Gaps = 99/1043 (9%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 P+V I+ PF E+ A L+ + A +++PT+RA + + F Sbjct: 2 TPHVRFISADRPFLPELARAWLDEATRDGRDP--------ADGVLFLPTRRAARAAAAAF 53 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 ++ G I+P I + ++ +L +L P ++ +R LARLIL + Sbjct: 54 LDAKGG-PLIMPRIAA--IGAADEAALGILAGLDLPPAITAEERRAILARLILGMGGRDG 110 Query: 125 DIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 + A+ +LA E L + W Sbjct: 111 APTTLAAALLLADDLALLLDTAAQAEIDLA-------------ETLPGIVAPDLAEHWQR 157 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242 DFL I ++ W L E A P Q L+ A+AE P+ +AG + PA Sbjct: 158 TLDFLSIVTRTWPAILAERGAVDPAVRQRMLIDAQAERWRLTPPAHPVWLAGLAAAPPAL 217 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 RL VA P+G +VLPG D +P W+ + THPQ L +L + Sbjct: 218 GRLARVVAGLPHGCVVLPGFDPDLPDKAWSMLDH-----------TPTHPQAGLNRLAEA 266 Query: 303 LDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + ++RE+V L + R ++ ++FLP + + Sbjct: 267 IGVRREEVAPLREGGATGRETRVALLRRAFLPTAPAAD-----------IAAASADGLWR 315 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 ++A +E++EA +IA+ LR +L+ + +AL+T DR LA+RV EL R GI + SAG L Sbjct: 316 LDAADEQDEARAIALTLRHALETPGRHAALVTPDRGLAQRVAAELERLGIRAEDSAGERL 375 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + T + +L L A D + + L+KHPL G P Sbjct: 376 ADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLVNAGLPAGRC----------------- 418 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++ L DH + L T+ + Sbjct: 419 ----------------RALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADL 462 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600 + LS+ + L + LW E G LS + I + Sbjct: 463 QVSLRPLSLGPAKTSPASLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDV 522 Query: 601 NAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A E + ++ ++ ++ + + I G +E+RL DTL+LGGL EGV+P Sbjct: 523 EATELVPLLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEP 582 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQ 717 P+LSR M+ L + IG+AAHD + + +I + R P + SR+L Sbjct: 583 EPGPWLSRPMRRAARLPDDAERIGEAAHDLGILIASCDEVILSAPRRRGRAPAVPSRFLA 642 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 R+ + + W+ +LD T + RP+P PP A+P +YS S++ Sbjct: 643 RIDLALRGAGSALKQ---HPASHWSTRLDQPTLRIARPRPEPRPPARARPISYSISKVTT 699 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L++DPYA+YA +L L + + + D GT+ H+ + + + R + P+ + Sbjct: 700 LLSDPYAIYAGEVLDLHTLNPLQAETDAALFGTITHDALKAVTRTRDWASAPDAAARLAH 759 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI 894 S + L ++ W +I+ +E E + + + I V +P + Sbjct: 760 AFTSELRGKRLRRALEAFWLVRLERIAEWIVEIERGRLADLGKADDIKVELPGEWRFGH- 818 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + G ADRI+ + I DYKTG P + + PQL +EA +AG F Sbjct: 819 -FTVKGRADRIERRGE-TLAIIDYKTGSPPADKAVEAGSAPQLPIEAVIAEAGGFPGFT- 875 Query: 955 RKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 KV L Y +L + + + + ++ + PF+ Sbjct: 876 GKVTELAYWKLSGGATEGETRALFGGNAGPLRAVIDAARTQIPALLAYYADPATPFLDAP 935 Query: 1013 RLSEKSNIQSEYDHLARVAEWRE 1035 K + ++R AEW+E Sbjct: 936 HPGRKP-YDQPFAGISRRAEWQE 957 >gi|99034830|ref|ZP_01314745.1| hypothetical protein Wendoof_01000432 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 932 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 214/1079 (19%), Positives = 375/1079 (34%), Gaps = 202/1079 (18%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ + + L+ E R + V I +P KR + L S F Sbjct: 3 RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEVKIILPCKRDVIALLSAFKN 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 KK ILP I SL ++ EE DL+L+ + + +R L L + IL W K D Sbjct: 53 HNAKKCIILPEIVSLENIDEE----DLILNLDRVKVIKPTKRTLLLIQFILEWNRKNNDN 108 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I LA +L ++D I++ + ++ + Sbjct: 109 FP-----------------IDLAYSLPSLLDKIQSTQTT-------DCYQFDEHSKKIEN 144 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + ++ W++ L +L + ++ + L K II G L+ Sbjct: 145 FISLLTETWSKTLKDLEVVDILKHKSDYINNMIISLQKDQY--IIFVGI----GKDKSLI 198 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + P G I+LP L+ I W ++ +K H QY L LLD+L + Sbjct: 199 RAIYDLPFGKIILPNLNLKIKEKDWKSLDKK-------------HYQYCLKDLLDYLKVD 245 Query: 307 REDVKRLGNVSNEMYGR------------SMVISKSFLPPDTSDMRNTDILENKIPNI-- 352 R DV L + + + +++++P + M P Sbjct: 246 RRDVSFLPEACSPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGITGSPEEYL 305 Query: 353 --------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398 ++ +I D+ EEA ++ + +E + +L+ D+ L Sbjct: 306 DYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENISLVVFDKLL 362 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 A R L+R I + ++L + + +++ +L+KH L FG Sbjct: 363 AAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLLKHRLVTFG 414 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + ++ +R + E+ LR + + ++ + K + Sbjct: 415 YTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED---------------- 458 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 +L++ + PL+ N SI D + C+ + + Sbjct: 459 -ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILS----GINFSELNS 505 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E G + + G IK + + I+T ++ E + L Sbjct: 506 EIGNFTCNFSNAC--EGVGIKCSLELYSQILTLFLEKEFFF---------VASDLNKFSL 554 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 + +IL G NE ++ L+ + + NL +A++ G + + Sbjct: 555 YHNKVVILAGFNEAPNFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHNLFCASKVY 610 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 TRSL LQRL +L LK+ Q Y DW R L+ +P Sbjct: 611 ITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWLRILNTPECTVPCTQPM 657 Query: 759 PFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 P P E + + S S I++LI +PY+ Y IL L + P + GT+ HNI Sbjct: 658 PKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILEFGTMVHNI 717 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + ++ + + I F + +W KI SF+E +E Sbjct: 718 LARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSFVEFDETRS 766 Query: 876 SSIEKIFVNIPAKMAI---------------------ESIGIHLTGFADRIDLLKSGFVD 914 + + I + I L DR++ L SG V Sbjct: 767 NY---VEWEKNFSCPIFHIPARDTGSCDQYETAWMTNKPQEISLIARCDRVEYLPSGQVA 823 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 I DYK G P E PQL L+A A++ I R+V+ L Y +L Sbjct: 824 IIDYKLGTPPSNEEVMSGFFPQLILQALAVEH-----ITKREVSELAYWKLDYDKIKVIS 878 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 + + ++ +L ++ + PFI+ + S Y L RV EW Sbjct: 879 IQNYRYK-----MQELKNDLPGFLSNYLSNSTPFIASPYFDKFLRFNS-YKQLERVGEW 931 >gi|88657793|ref|YP_507616.1| hypothetical protein ECH_0820 [Ehrlichia chaffeensis str. Arkansas] gi|88599250|gb|ABD44719.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Arkansas] Length = 914 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 184/1032 (17%), Positives = 368/1032 (35%), Gaps = 129/1032 (12%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +F++ F A++ + F + N +SV I VP + ++ L + Sbjct: 3 KIFSVYCPESFL-----AVVAKFAFDIFNDNSGNS---SSVIIIVPNQEDVKLLYGQLKL 54 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 + SL D+ ++ + ++ ++ I++LL L I +W ++ D Sbjct: 55 YFHATVLAQVKVMSLSDIDQDLLANE----HSFVRIMTPIRKLLLLMEFIKLWNSENGDN 110 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + L L+ +++ + +L L + AA Sbjct: 111 YP-----------------LSLGYELSSLLNEMHVHCIPISNLECLFDYDLPAHCQKAAR 153 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL SK W E L + + ++ + ++L +I + Sbjct: 154 FLSELSKKWKEVLNKDEVLDILEHRSLYIGNLIKYLQDEVLNCTVIFAGMVFDNFFVNFI 213 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + PN I+ P +D I W + H QY + LLD L + Sbjct: 214 QELYKLPNSRIIFPYVDISIDEKDWQLLE-------------ECHYQYYVKSLLDILKVN 260 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R D+ LG ++ ++ S+ FL +S V LI + Sbjct: 261 RNDIVFLGEPNHSVFVSSVFNFNLFLEKYHQHEIQNYSD----------YSRVKLITCIS 310 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 + EEA +++ ++ +++ + + T + L +R+ + + + G + + Sbjct: 311 DEEEAQVVSMLIKENVNSSP---IVFTNNLLLTKRINSIVNAERLLDKPNVGYLILS--- 364 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + L + + + + +L+KHP G+ ++ ++ EL +R Sbjct: 365 --FILHTLEVVMSKWNPIPLLSLLKHPFVTLGYVKEDYDALISSFELKVIRSYSGYDFFS 422 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +E + + I I PLV K + Sbjct: 423 ----------------------MENNVKEKVPDLLPFWEKITSVILPLVKVKHDV----- 455 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-W 605 IS K + C+QN+ N + + + F + + + IK ++ + Sbjct: 456 ---ISSIVKAHIVCIQNLLEGNLVIDSNGYSK-----IQEFFDDLQNSCNGIKVYGMDVY 507 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I+T ++ +L L +I G NE + + L+ Sbjct: 508 YEILTSVLYSSF---------SLENYKLSTVNLFKRGIVIFAGFNEINYGV-NSCGTLLN 557 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 R +++ L L + ++ G A+ + T+SL+ S W++RL +L Sbjct: 558 RWIRTKLGLPSIQREKGYFAYLLHSFFYADKIYITQSLKSFGKINEESIWIRRLGILAKL 617 Query: 726 DFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781 +NLK + Y + + TK Y RP+P P + + S + ++ L+ + Sbjct: 618 YDIENLKC--EIYSKISDRFSCDDTKSLAYLRPQPNPDINNRVIAFNVLSTTSLETLVKN 675 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 PY Y IL + + D G + HN++ + + N N L++ Sbjct: 676 PYVFYLSNILNILPCKSINEKFSMRDFGIVVHNVLHKYL--LCNNNQHRYEDLVEIAASE 733 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 +K P ++ I F KI+ F E + +++I I S I + Sbjct: 734 LLDKYKDFPQVETILWPKFQKIAEQFFEINLERAHYVDEIITERFFSWEINS-NIEVISR 792 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 DR++ LK G V I DYKTG P + + Q+ ++A +K ++++ L Sbjct: 793 CDRVECLKDGSVIIIDYKTGAIPSQSDINYGVALQMIIQALTVKQSL-----KKEISGLM 847 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y ++ + + EL +K L +++ +PF + +S+ Sbjct: 848 YWKISSED-----MRIVPIDNYTELIKKLEVALKQLILDYVEFMKPFTASCDMSK----Y 898 Query: 1022 SEYDHLARVAEW 1033 ++YD + RV EW Sbjct: 899 ADYDLITRVKEW 910 >gi|68171127|ref|ZP_00544536.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa] gi|67999452|gb|EAM86092.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa] Length = 914 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 184/1032 (17%), Positives = 367/1032 (35%), Gaps = 129/1032 (12%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +F++ F A++ + F + N +SV I VP + ++ L + Sbjct: 3 KIFSVYCPESFL-----AVVAKFAFDIFNDNSGNS---SSVIIIVPNQEDVKLLYGQLKL 54 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 + SL D+ ++ + ++ ++ I++LL L I +W ++ D Sbjct: 55 YFHATVLAQVKVMSLSDIDQDLLANE----HSFVRIMTPIRKLLLLMEFIKLWNSENGDN 110 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + L L+ +++ + +L L + AA Sbjct: 111 YP-----------------LSLGYELSSLLNEMHVHCIPISNLECLFDYDLPAHCQKAAR 153 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL SK W E L + + ++ + ++L +I + Sbjct: 154 FLSELSKKWKEVLNKDEVLDILEHRSLYIGNLIKYLQDEVLNCTVIFAGMVFDNFFVNFI 213 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + PN I+ P +D I W + H QY + LLD L + Sbjct: 214 QELYKLPNSRIIFPYVDISIDEKDWQLLE-------------ECHYQYYVKSLLDILKVN 260 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R D+ LG ++ ++ S+ FL +S V LI + Sbjct: 261 RNDIVFLGEPNHSVFVSSVFNFNLFLEKYHQHEIQNYSD----------YSRVKLITCIS 310 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 + EEA +++ ++ +++ + + T + L +R+ + + + G + + Sbjct: 311 DEEEAQVVSMLIKENVNSSP---IVFTNNLLLTKRINSIVNAERLLDKPNVGYLILS--- 364 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + L + + + + +L+KHP G+ ++ ++ EL +R Sbjct: 365 --FILHTLEVVMSKWNPIPLLSLLKHPFVTLGYVKEDYDALISSFELKVIRSYSGYDFFS 422 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +E + + I I PLV K + Sbjct: 423 ----------------------MENNVKEKVPDLLPFWEKITSVILPLVKVKHDV----- 455 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-W 605 IS K + C+QN+ N + + + F + + + IK ++ + Sbjct: 456 ---ISSIVKAHIVCIQNLLEGNLVIDSNGYSK-----IQEFFDDLQNSCNGIKVYGMDVY 507 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I+T ++ +L L +I G NE + + L+ Sbjct: 508 YEILTSVLYSSF---------SLENYKLSTVNLFKRGIVIFAGFNEINYGV-NSCGTLLN 557 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 R +++ L L + ++ G A+ + T+SL+ S W++RL +L Sbjct: 558 RWIRTKLGLPSIQREKGYFAYLLHSFFYADKIYITQSLKSFGKINEESIWIRRLGILAKL 617 Query: 726 DFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781 +NLK + Y + + TK Y RP+P P + + S + ++ L+ + Sbjct: 618 YDIENLKC--EIYSKISDRFSCDDTKSLAYLRPQPNPDINNRVIAFNVLSTTSLETLVKN 675 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 PY Y IL + + D G + HN++ + + N N L++ Sbjct: 676 PYVFYLSNILNILPCKSINEKFSMRDFGIVVHNVLHKYL--LCNNNQHRYEDLVEIAASE 733 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 +K P ++ I F KI+ F E + +++I I S I + Sbjct: 734 LLDKYKDFPQVETILWPKFQKIAEQFFEINLERAHYVDEIITERFFSWEINS-NIEVISR 792 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 DR++ LK G V I DYKTG P + + Q+ ++A +K ++++ L Sbjct: 793 CDRVECLKDGSVIIIDYKTGAIPSQSDINYGVALQMIIQALTVKQSL-----KKEISGLM 847 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y ++ + + EL +K L +++ +PF + +S Sbjct: 848 YWKISSED-----MRIVPIDNYTELIKKLEVALKQLILDYVEFMKPFTASCDMS----RY 898 Query: 1022 SEYDHLARVAEW 1033 ++YD + RV EW Sbjct: 899 ADYDLITRVKEW 910 >gi|58696747|ref|ZP_00372288.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila simulans] gi|58537064|gb|EAL60192.1| conserved hypothetical protein [Wolbachia endosymbiont of Drosophila simulans] Length = 901 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 209/1043 (20%), Positives = 364/1043 (34%), Gaps = 213/1043 (20%) Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 L + F +K ILP I SL ++ EE DL+L+ + +S I+R L L + IL Sbjct: 3 ALLNAFKNYNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILE 58 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 W K D I LA +L ++D I+ + ++ Sbjct: 59 WNRKNNDNFP-----------------IDLAYSLPSLLDKIQYTQM----------AEFD 91 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 F+ + + W + L +L + ++ + + L K II G Sbjct: 92 EHSKKIESFINLLIETWNKILKDLGVVDILEHKSDYINSMITSLQKDQ--HIIFVGI--- 146 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 L+ + + P G I+LP L+ I W + +K H QY L Sbjct: 147 -GKDKSLIKAIYDLPFGEIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKD 192 Query: 299 LLDFLDIKREDVKRLGNVSNE------------MYGRSMVISKSFLPPDTSDMRN----- 341 LLD+L++ R DV L + + +++++P ++ M Sbjct: 193 LLDYLNVDRRDVSFLPEACSPVLRHWDPENLTLNERTRWLYNRNWIPVSSTGMTPSTTQI 252 Query: 342 -----------TDILENKIPNIQKCFS--------------DVALIEADNEREEAISIAI 376 P + F ++ +I D+ EEA ++ Sbjct: 253 TCKLQCSYTKNQRAGMTGSPELDYVFDTTADLSKVSSGHIGNIEVITCDSREEEAQVTSL 312 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + +E + +L+ D+ LA R L+R I + ++L + Sbjct: 313 IIE---NEGYENVSLVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEV 361 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + +A+ +L+KH L FG+ ++ SR + E+ LR ++ L +++ I Sbjct: 362 LTSNWSSVALLSLLKHRLVTFGYTQEEYSRILSEFEIEILR----NFSTNGLSD-IINAI 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 K H KE +L++ + PL+ N ISD Sbjct: 417 NAHKKLKH------------KEDILLIISKLEIIFNPLLNI--------INCPISDVVAT 456 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLID 614 + C+ + + F E + + + I+ + + I+T ++ Sbjct: 457 HLQCINVLSG--------INFSELNSEIGNFTCNFLNACEGIEIKCSLELYSQILTLFLE 508 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 E + L + +IL G NE ++ L+ + + NL Sbjct: 509 KEFFS---------VASDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNL 555 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 +A++ G + + TRSL LQRL +L LK+ Sbjct: 556 PSAQEEQGYFFYTLHNLFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEG 602 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRIL 791 Q Y DW R L+ +P P P E + + S S I++LI +PY+ Y IL Sbjct: 603 KQPYRDWLRVLNTPECTVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYIL 662 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 L + P + T+ HNI+ ++ + + I F + Sbjct: 663 GLKQLRDLNFKPSILEFSTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--N 711 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-------------------- 891 +W KI SF+E +E + + + I Sbjct: 712 FSNMWWVRLQKIIQSFVEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMT 768 Query: 892 -ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I LT DR++ L SG V I DYK G P E PQL L+A A++ Sbjct: 769 NRPQEILLTARCDRVEYLPSGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY---- 824 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 + R+V+ L Y +L D ++ ++ +L + ++ + PFI+ Sbjct: 825 -VTGREVSELAYWKLDYDKIKVISLRDYRQK-----MQEFQNDLPDFLSNYLSNSTPFIA 878 Query: 1011 HLRLSEKSNIQSEYDHLARVAEW 1033 + S Y L RV EW Sbjct: 879 SPYFDKFLRFNS-YKQLERVGEW 900 >gi|58584530|ref|YP_198103.1| RecB exonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418846|gb|AAW70861.1| RecB exonuclease [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 888 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 179/1041 (17%), Positives = 360/1041 (34%), Gaps = 170/1041 (16%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +FT++ FF ++ + E + +P + + + S F Sbjct: 3 RIFTVSVDESFFDTLVQHIFFEYEKEKISKIKII----------LPCRSDVIAMLSAFKN 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 KK ILP I SL ++ E+ DL+L+ + + +R+L L + IL W K D Sbjct: 53 YDSKKCIILPEIVSLENIDEK----DLILNLDRIKFIKPTKRILLLIQFILEWNKKNNDY 108 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I LA +L ++D ++ + + + + Sbjct: 109 FP-----------------IDLAYSLPSLLDKVQCIQIT-------DDYQLNDHSKKMEN 144 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + + W++ L L + Y+ + L + II G G L+ Sbjct: 145 FINLLVEAWSKTLKNLGVMDILKYKSDYINNMVISLQEDQ--HIIFVGI-GKGEIYKLLI 201 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + P G I+LP L+ I W ++ ++ H QY L LLD+L + Sbjct: 202 KAIYELPFGKIILPNLNLKIKEKDWKSLDKR-------------HYQYCLKNLLDYLSVS 248 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 RED+ L +G + ++ + + D + + ++ +I D+ Sbjct: 249 REDISFLPEALPPAHGARICDQRTGMTAEYLDYIFDTTADLSKVS-NGYIENIEVITCDS 307 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 EE+ +++ + +E + +L+ D+ LA R+ + + Sbjct: 308 REEESQVMSLIIE---NEGYENVSLVVFDKLLAARITCSASENY--------------PY 350 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 ++L + + + +A+ +L+KH L FG+ ++ S+ + E+ LR Sbjct: 351 VTLLLYSIEVLTSNWNSVALLSLLKHRLVTFGYAQEEYSKILSEFEIEILRS-------- 402 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 T + V KE +++++ + + PL+ Sbjct: 403 ---------FNTSGLDDIVKVINIHKKLRYKEDILIIINKLETILNPLLN--------ST 445 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIE 604 N ISD + C+ + ++ F E + + + + + Sbjct: 446 NCPISDVVTAHLRCVSILS--------SVDFLELSNEMGNFTHDFLNACEGVAIECSLEL 497 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + I+T + E L + + L + +IL G N+ ++ FL Sbjct: 498 YSQILTLFLRKEFF---------LAVSDLSKFSLYHNKVVILAGFNDIPSFQSP----FL 544 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 + + + +L + + G ++ + L + Sbjct: 545 NALTRKRFSLPSVREEQGYFLYNLRNLFCASKVYIIN-------------LLSNRKTILL 591 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIND 781 L+K Y DW R L+ +P P P + + + S +++LI D Sbjct: 592 RRLEILLQKSKYPYRDWLRVLNMPEYVTPCIQPMPKPQTKIREEKMQVMPCSAVEKLIRD 651 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 PY+ Y +L L + P + G + H+I+ ++ R + I Sbjct: 652 PYSFYIEYVLNLKQLKDLNFKPSILEFGNMVHSILERYLRNRKSP---------MSIAQE 702 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---- 897 F + +W I SF+E ++ + ++ + + + Sbjct: 703 VFSTSRF--NFSNMWWVRLQGIIQSFVEFDKARSN---RVELEKSFSYRVPVHNVKATWK 757 Query: 898 -----LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 LT DR++ L +G I DYK G P E PQL L+A A++ Sbjct: 758 LQEVSLTARCDRVEYLPNGQAVIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----T 812 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 ++V+ L Y +L + ++ ++ +L + ++ PFI+ Sbjct: 813 TGKEVSELAYWKLDYDKIKVISLKNYRQK-----VQEFQSDLPDFLSNYLKNTTPFIASP 867 Query: 1013 RLSEKSNIQSEYDHLARVAEW 1033 + S Y L R+ EW Sbjct: 868 YFDKFLRFNS-YKQLERIGEW 887 >gi|288927883|ref|ZP_06421730.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330717|gb|EFC69301.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] Length = 957 Score = 327 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 147/1065 (13%), Positives = 312/1065 (29%), Gaps = 167/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + L+ VT+ P KRA L + P Sbjct: 5 FLEYVAEDLLKKFGTD-----------LSRVTLVFPNKRASLFLNEHLARMADG-PLWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + ++ + ++ + L + L I+ + Sbjct: 53 VYTTISQLFRDRSARIVADDIKL------------VCDLYRIYVQCTGSTETLDHFYGWG 100 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGMWWLLAA-DFLKIASKY 194 L +S + I KNLAD D+ ++H L A F S Sbjct: 101 MLMLSDFDDID--KNLADAADVFRN----LSNIHELDDVSYLTGEQREALKRFFSNFSDD 154 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + Sbjct: 155 YNSELK---------------KRFLQLWQN----------FGDIYNRYNAHLQAEGLAYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 GA+ S + Q KL L+ + Sbjct: 190 GALYREVACN----------ENVSFDADVYVFVGFNMLQKVEQKLFARLEKAGKAKFYWD 239 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 M G + + + +I N + + A E +A + Sbjct: 240 FDRYYMEGVNNEAGHYIRQYLNAFPNELFNRDEEIYNNFCQEKKMQFVSASTETIQARFV 299 Query: 375 AIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 L+ + + +K+A++ D NL + V L +++I+ G PL+ + S + +L Sbjct: 300 GHWLQNDTFVQAGRKTAVVLCDENLLQTVVHSLPPQVESVNITTGFPLAQSPVFSFVNAL 359 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 + + ++ Y + L Sbjct: 360 IALQTAGYT----------------------RSSGRYRLQYVRPVLRHPYGLF-LSENCS 396 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 +AT H ++ R E LL + + + + Y + Sbjct: 397 KLLATL--EEHHTYYPLRQDLATDEGLTLLFADLEEGVADVQAY------------HARL 442 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + L+ V +L E + TL + ++I + + I + +IT+ Sbjct: 443 VEWMLQLLKCVGTSTQETNDHLMKEAIYRMYTLFNRLHELI-ISGDLSVDLITLLRLITQ 501 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 L+ + E L ++G LE+R L+FD ++L NEG PK F+ ++ Sbjct: 502 LVQATCIPFHGEPVVGLQVMGVLETRNLDFDNILLLSCNEGNMPKGVNDASFIPYSIRKA 561 Query: 672 LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFD 729 L T + + ++ F +++ + + T SR++ ++LV G Sbjct: 562 HGLTTIDHKVAIYSYYFHRLLQRAKNVTILYNNSTEDGHTGEMSRFMLQMLVESGHQI-- 619 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + ++ + K+ + + S + I + + + Sbjct: 620 ------ERLSLQAGQMPNVLQPHAVKKTQSIMEEMLKLEKLSPTAINRYLRCQLLFFYNI 673 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEINHLMKQII 839 + L D D G +FH + ++ ++ K+ +++++ Sbjct: 674 VAGLKESDDETDDIDNRTFGNIFHKSSQLIYEQLMDANSAVSDRAIKDFLADKSALQRVV 733 Query: 840 DSHFEKE-------NLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--- 886 D F +E N P + +I R + L+ + + + + Sbjct: 734 DRAFNEELFKVSNTNQRPEYNGLQLINRGVIISYLKKLLQMDLALTP-FRILAMEKQVYN 792 Query: 887 ---AKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-----KKETAQKL--- 932 + + + + G+ DR+D + G + + DYKTG P E Sbjct: 793 DVLFHVDGKQHPLKIGGYVDRLDEVDEGMGKVIRVVDYKTGRKPQMGVATFEDIFSGEKV 852 Query: 933 ------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSA 983 Q L AA ++ +F V+ L +I+ + D + ++ Sbjct: 853 TKNHADYFFQTFLYAAIVRDSAFWNAQKLPVSPALLFIQQASTEENDPVLRLGKERVDDV 912 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ L ++ + + ++PF + + Y + Sbjct: 913 ATYRDEFWAGLQSLLEEIFDKDRPF--EPTEDRERCTRCPYRQVC 955 >gi|260911841|ref|ZP_05918408.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634052|gb|EEX52175.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 957 Score = 324 bits (829), Expect = 6e-86, Method: Composition-based stats. Identities = 145/1072 (13%), Positives = 320/1072 (29%), Gaps = 181/1072 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + L+ VT+ P KRA L + P Sbjct: 5 FLEYVAEDLLKKFGTD-----------LSRVTLVFPNKRASLFLNEHLARMADG-PLWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + ++ + ++ + L + L I+ + Sbjct: 53 VYTTISQLFRDRSERIVADDIKL------------VCDLYRIYVQCTGSTETLDHFYGWG 100 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--AADFLKIASKY 194 L +S + I KNLAD D+ ++H L + Y F S Sbjct: 101 MLMLSDFDDID--KNLADATDVFRN----LSNIHELDDISYLTDEQREVLKRFFSNFSDD 154 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + Sbjct: 155 YNTELK---------------KRFLQLWQN----------FGDIYNRYNAHLQEEGLAYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 GA+ + S + + Q +L L+ + Sbjct: 190 GALYREVVCN----------ENVSFDAETYIFVGFNMLQKVEQRLFARLEKAGKAKFYWD 239 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 S M G + + + +I + + + + A E +A + Sbjct: 240 FDSYYMEGANNEAGHYIRQYLDAFPNELFNRDEEIYDNFRQEKKLQFVSASTETIQARFV 299 Query: 375 AIALR-MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 L+ + + +K+A++ D NL + V L ++I+ G PL+ + S + +L Sbjct: 300 GHWLQNDAFVQAGRKTAVVLCDENLLQTVVHSLPPQVERVNITTGFPLAQSPVFSFVNAL 359 Query: 434 LNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + +++HP + +LS + L + Sbjct: 360 IALQTAGYTKNSGRYRLQYVRPVLRHPYS------LFLSENCSKLLSTLEEHHTYYPLRQ 413 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 DL + E LL + + + + Sbjct: 414 DLTT--------------------------DEGLTLLFSDLEEGVADM------------ 435 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIE 604 + + + + L+ V +L E + TL + ++I + + I Sbjct: 436 QMYHARLVEWMLQLLKCVGTSTQETNDHLMKEAIYRMYTLFNRLHELI-ISGDLSVDLIT 494 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +IT+L+ ++ E + L ++G LE+R L+FD ++L NEG PK F+ Sbjct: 495 LLRLITQLVQSTSIPFHGEPAVGLQVMGVLETRNLDFDNILLLSCNEGNMPKGVNDASFI 554 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVL 722 ++ L T + + ++ F +++ + + T SR++ ++LV Sbjct: 555 PYSIRKAHGLTTVDHKVAIYSYYFHRLLQRAKNVTILYNNSTEDGHTGEMSRFMLQMLVE 614 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G + + + ++ + + S + I + + Sbjct: 615 SGHQI--------ERLSLQAGQTPNVLQPHAVRKTQSVMEEMLKLEKLSPTAINRYLRCQ 666 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEIN 832 + + L D D G +FH + ++ ++ K+ Sbjct: 667 LLFFYNIVAGLKESDDETDDIDNRTFGNIFHKSSQLIYEQLMDANSTVTDRAIKDFLADK 726 Query: 833 HLMKQIIDSHFEKE-------NLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 +++++D F +E N P + +I R + L+ + + + Sbjct: 727 SALQRVVDRTFNEELFKVSNTNQRPEYNGLQLINRGVIISYLKKLLQMDLALTP-FRILA 785 Query: 883 VNIP------AKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-----KKET 928 + + + + + G+ DR+D + G + + DYKTG P E Sbjct: 786 MEKQVYNDVLFHVDGKQHPLKIGGYVDRLDEVDEGMGKVIRVVDYKTGRKPQAGVATFEE 845 Query: 929 AQKL---------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN-- 976 Q L AA ++ +F V+ L +I+ + D + Sbjct: 846 IFSGEKVTKNHADYYFQTFLYAAIVRDSAFWNAHKLPVSPALLFIQQASAEENDPVLRLG 905 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ ++ L ++ + + ++PF + + Y + Sbjct: 906 KERVDDVATYRDEFWAGLQSLLEEIFDKDRPF--EPTEDRERCTRCPYRQVC 955 >gi|282877530|ref|ZP_06286348.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281300354|gb|EFA92705.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 960 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 141/1075 (13%), Positives = 302/1075 (28%), Gaps = 192/1075 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L+ L+ V + P KRA + + ++ + P Sbjct: 5 FLKYVAQDLIAKFG-----------QDLSRVAVVFPNKRASLFMNEQLACLSD-RPIWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + S L + L + Sbjct: 53 SYITISDLFRRHSPFTVGDSIKL------------ICDLHKSFNACTGSD---------- 90 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIAS 192 + + L D I+ + L + + KI Sbjct: 91 ---ETLDKFYGWGQLLLSDFDDIDKNMVDADKVFANLRDIHEFDDVSYLSEEQK--KILQ 145 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 ++ + + + + + + + + + + S I L VA + Sbjct: 146 AFFKNF--DEDHDTELKRRFLNLWSHFKDIYHDFNQRL----SDQGIAYEGALYRQVAQN 199 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 ++ ++ Q L L + + Sbjct: 200 E-------DIEFEYDQYVFVG---------------FNVLQKVEQALFKRLKDTGKALFY 237 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + D +++ D+ + A E +A Sbjct: 238 WDFDRYYLADGKQEAGHFIRQYLDVFPNELDNQSDELYKQFTKPKDITYLSAPTENMQAR 297 Query: 373 SIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 I LR E K +A++ D L + V + I+I+ G PL+ + +S++ Sbjct: 298 YITTWLREKGRIEAGKNTAIVMCDEQLLQTVIHCIPPEAGKINITTGYPLAQSPVASLIN 357 Query: 432 SLLNAIFKL-------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 LL A+ ++HP A++ E Sbjct: 358 VLLMLQTSGHILNTDKYRLAAVKRALRHPYAQYISENHQTLLTHLDTEKHYFP------- 410 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 R ++ + + L + + L Sbjct: 411 ---------TRSELSMDDGLSLLFTDIDDDPTNSLLTTWI------LNVLKRIGQQGRD- 454 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE--TGSCIKANA 602 + +F+E + +L +++ + + N Sbjct: 455 ---------------------------NEDAFFQESVFRMYTLINRLSDLIAAGDLTINL 487 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + ++ +LI ++ E + + ++G LE+R L+FD L++ NEG PK + Sbjct: 488 TTFERLMAQLIQATSIPFHGEPAEGIQVMGVLETRNLDFDHLLVLSCNEGNMPKGVSDTS 547 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLL 720 F+ ++ L T + + A+ F + T + T SR++ +++ Sbjct: 548 FIPHTLREAYGLTTVKHKVAIYAYHFHRLIQRASDVTLTYNNSTEISHTGEMSRFMLQMM 607 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 V G Q Y + T ++ + Q S + I + + Sbjct: 608 VESGHPI--------QRYSMLCGQSMETHGPEVIEKNEQVMQALNQLEQLSPTAINRYLR 659 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINH 833 P Y + +L + D G +FH + ++ + ++ Sbjct: 660 CPLQFYYNILARLKEPEA-EDAVDNRMFGNIFHRSAELIYTHLKEKNQRIQASDIHDLRT 718 Query: 834 ---LMKQIIDSHFEKENL----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 ++Q +D F +E + +I R + + L+ + + + Sbjct: 719 KGKRIEQFVDQAFNEELFNVSNKGYRPEYNGLQLINRRVIIDYLNRLLQID-EKLAPFVI 777 Query: 881 IFVNIPAKMAI------ESIGIHLTGFADRID--LLKSG--FVDITDYKTGDNPKKETA- 929 + I S + + G+ DR+D + G + + DYKTG + Sbjct: 778 KSLEEKVSSTITFETAQGSHSLSIGGYIDRLDEIVNPDGTHRIRVIDYKTGKSMTSTPVD 837 Query: 930 -----------QKLID--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDC-- 973 +K D Q L A+ +K V+ L +I+ D Sbjct: 838 VDDIFTDEKLSEKHKDYYLQTFLYASIVKHHPQLNPSQLPVSPALLFIQQTAGEDYDPTL 897 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + +K E K +NL ++++ + N PF K Y L Sbjct: 898 LLEKEKVLDIGEHDAKFKENLQQLLSEIYNPSIPFA--PTSELKRCTYCAYRQLC 950 >gi|42520737|ref|NP_966652.1| hypothetical protein WD0912 [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410477|gb|AAS14586.1| hypothetical protein WD_0912 [Wolbachia endosymbiont of Drosophila melanogaster] Length = 890 Score = 321 bits (821), Expect = 5e-85, Method: Composition-based stats. Identities = 203/1027 (19%), Positives = 358/1027 (34%), Gaps = 192/1027 (18%) Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 L S F KK ILP I SL ++ EE DL+L+ + + +R L L + IL Sbjct: 3 ALLSAFKNHNAKKCIILPEIVSLENIDEE----DLILNLDRVKVIKPTKRTLLLIQFILE 58 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 W K D I LA +L ++D I++ + ++ Sbjct: 59 WNRKNNDNFP-----------------IDLAYSLPSLLDKIQSTQTT-------DCYQFD 94 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 +F+ + ++ W++ L +L + ++ + L K II G Sbjct: 95 EHSKKIENFISLLTETWSKTLKDLEVVDILKHKSDYINNMIISLQKDQY--IIFVGI--- 149 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 L+ + + P G I+LP L+ I W ++ +K H QY L Sbjct: 150 -GKDKSLIRAIYDLPFGKIILPNLNLKIKEKDWKSLDKK-------------HYQYCLKD 195 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGR------------SMVISKSFLPPDTSDMRNTDILE 346 LLD+L + R DV L + + + +++++P + M Sbjct: 196 LLDYLKVDRRDVSFLPEACSPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGI 255 Query: 347 NKIPNI----------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390 P ++ +I D+ EEA ++ + +E + + Sbjct: 256 TGSPEEYLDYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENIS 312 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 L+ D+ LA R L+R I + ++L + + +++ +L+ Sbjct: 313 LVVFDKLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLL 364 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 KH L FG+ ++ +R + E+ LR + + ++ + K + Sbjct: 365 KHRLVTFGYTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED-------- 416 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 +L++ + PL+ N SI D + C+ + Sbjct: 417 ---------ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILS----G 455 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 + E G + + G IK + + I+T ++ E Sbjct: 456 INFSELNSEIGNFTCNFSNAC--EGVGIKCSLELYSQILTLFLEKEFFF---------VA 504 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + L + +IL G NE ++ L+ + + NL +A++ G + Sbjct: 505 SDLNKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHN 560 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + TRSL LQRL +L LK+ Q Y DW R L+ Sbjct: 561 LFCASKVYITRSLSHRKPI-----LLQRLEIL--------LKEGKQPYRDWLRILNTPEC 607 Query: 751 QPHYKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 +P P P E + + S S I++LI +PY+ Y IL L + P + Sbjct: 608 TVPCTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILE 667 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 GT+ HNI+ ++ + + I F + +W KI SF Sbjct: 668 FGTMVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSF 716 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAI---------------------ESIGIHLTGFADRID 906 +E +E + + + I + I L DR++ Sbjct: 717 VEFDETRSNY---VELEKNFSCPIFHIPARDTGSCDQYETAWMTNKPQEISLIARCDRVE 773 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 L SG V I DYK G P E PQL L+A A++ I R+V+ L Y +L Sbjct: 774 YLPSGQVAIIDYKLGTPPSNEEVMSGFFPQLILQALAVEY-----ITKREVSELAYWKLD 828 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + + ++ +L ++ + PFI+ + S Y Sbjct: 829 YDKIKVISIQNYRYK-----MQELKNDLPGFLSNYLSNSTPFIASPYFDKFLRFNS-YKQ 882 Query: 1027 LARVAEW 1033 L RV EW Sbjct: 883 LERVGEW 889 >gi|57239004|ref|YP_180140.1| hypothetical protein Erum2730 [Ehrlichia ruminantium str. Welgevonden] gi|58578942|ref|YP_197154.1| hypothetical protein ERWE_CDS_02780 [Ehrlichia ruminantium str. Welgevonden] gi|57161083|emb|CAH57990.1| hypothetical protein Erum2730 [Ehrlichia ruminantium str. Welgevonden] gi|58417568|emb|CAI26772.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 912 Score = 319 bits (817), Expect = 2e-84, Method: Composition-based stats. Identities = 187/1032 (18%), Positives = 369/1032 (35%), Gaps = 132/1032 (12%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VF++ S F + L+ ++++ + V + + L + Sbjct: 3 KVFSVHCSESFLNVVAEFTLDVFYSSTN--------SVSNIIVIVSSNEEMTLLDKLLAK 54 Query: 67 IT-GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 + G S++ + SL D+ + + + + +S +++L+ L I +W ++ D Sbjct: 55 SSYGNYSSLKIKVISLSDIDHDVL----VNNSDFVKIISPLRKLMLLMEFIKLWNSEHCD 110 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + L+ L+ +++ + T L A Sbjct: 111 NYP-----------------LSLSYELSALLNEMYTHCIPLSSFENLFEYDLPEHSQKAV 153 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 FL SK WTE L + N + ++ + +L +G+ II Sbjct: 154 KFLSCFSKKWTEILQQENVLDILEHRSLYINTLIRYLEEGSSNSTIIFAGMAFNTLIIDF 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + T+ PN I+LP +D I W + +H QY + LLD L I Sbjct: 214 VRTLYKLPNTQIILPYVDVSIDEKNWKLLE-------------ESHYQYCVKNLLDVLKI 260 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 R DV LG +N ++ S+ FL I V +I Sbjct: 261 GRNDVVFLGKQNNRVFIDSIFNFDLFLEEYHKGRIQ----------ICDSCDYVQVITCM 310 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 ++ EE+ I+ ++ K A+ T + L++RV + I ++ + + Sbjct: 311 SDEEESHVISALMKK---YKSKDVAVFTNNVLLSKRVDSIVNLENIPHELDVNYLILS-- 365 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 ++++L + + +++ +L+KHP G+ E S + EL +R + + Sbjct: 366 ---FVSNVLEVVISSWNPISLLSLLKHPFINLGYSEDEYSTLISNFELKVIRLYSSYDFV 422 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 E + + I + PLV K Sbjct: 423 S----------------------IDGNVREKVPDLIHFWEKITSIVLPLVDVK------- 453 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE- 604 + +IS K + CL+++ + + F + I+ + I+ Sbjct: 454 -HCTISSIVKAHIVCLRDLLTGST--------VFSYEKIEGFFDNFQSACANIRMSGIDI 504 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +I+ ++ + L + +I G NE + + L Sbjct: 505 YYEILISVLHNNLF---------VENYRLSSVNLYKREVVIFSGFNELNYGTGLH-STLL 554 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 + M+S L L + ++ G A+ + + TRSL+ S W++++ ++ Sbjct: 555 NNRMRSKLGLPSIQREKGYFAYMLYSFFYSDKIYITRSLKSFGKVNEESIWIKKIKIMAK 614 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLIND 781 + NL++ + YL + + Y RP+P P + + S + ++ L+ + Sbjct: 615 IYNYKNLER--EDYLRSEKGCTNSVTNLCYLRPQPNPEINHRVMAFNILSTTAVEILVKN 672 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 PY Y IL + + D G + HN++ + + N+ + L+K Sbjct: 673 PYVFYLNNILNILPYKDINEKFSMRDFGIIVHNVLHKYLVTPKNQ--QDYERLIKIAESE 730 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 K P ++ I F +I+ F E S+I+KI I + + Sbjct: 731 FLNKYKNFPQVETILWPKFQQIAEQFFEMNLNRNSNIDKIITEHFFSWEIN-NNVKIISK 789 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 DR++ LK + I DYKTG P + + I Q+ ++A +K I ++L Sbjct: 790 CDRVECLKDNSIAIIDYKTGVIPSQVDISRGIALQMIIQALTVKKSLKKNI-----SDLM 844 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y ++ + + +E+ EK+ L E++ +PFI+ S Sbjct: 845 YWKIGAED-----IKVVSIDNYEEIMEKTEIALKELILEYLVNRKPFIA----SHDIAGF 895 Query: 1022 SEYDHLARVAEW 1033 YD L R+ EW Sbjct: 896 GSYDLLIRLKEW 907 >gi|58617000|ref|YP_196199.1| hypothetical protein ERGA_CDS_02730 [Ehrlichia ruminantium str. Gardel] gi|58416612|emb|CAI27725.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 913 Score = 311 bits (795), Expect = 6e-82, Method: Composition-based stats. Identities = 177/961 (18%), Positives = 344/961 (35%), Gaps = 123/961 (12%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + SL D+ + + + + +S +++L+ L I +W ++ D Sbjct: 67 KVISLSDIDHDVL----VNNSDFVKIISPLRKLMLLMEFIKLWNSEHCDNYP-------- 114 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + L+ L+ +++ + T L A +FL SK WT Sbjct: 115 ---------LSLSYELSALLNEMYTHCIPLSSFENLFEYDLPEHSQKAVEFLSCFSKKWT 165 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E L + N + ++ + +L +G+ II + T+ PN Sbjct: 166 EILQQENVLDILEHRSLYINTLIRYLEEGSSNSTIIFAGMAFNTLIIDFVRTLYKLPNTQ 225 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 I+LP +D I W + +H QY + LLD L I R DV LG Sbjct: 226 IILPYVDVGIDEKNWKLLE-------------ESHYQYCVKNLLDVLKIGRNDVVFLGKQ 272 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 +N ++ S+ FL I V +I ++ EE+ I+ Sbjct: 273 NNRVFIDSIFNFDLFLEEYHKGRIQ----------ICDSCDYVQVITCMSDEEESHVISA 322 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 ++ K A+ T + L++RV + + ++ + + ++++L Sbjct: 323 LMKK---YKSKDVAVFTNNVLLSKRVDSIVNLENLPHELDINYLILS-----FVSNVLEV 374 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + +++ +L+KHP G+ E S + EL +R + + Sbjct: 375 VVSFWNPISLLSLLKHPFINLGYSEDEYSTLISNFELKVIRLYSSYDFVS---------- 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 E + + I + PLV K + +IS K Sbjct: 425 ------------IDGNVREKVPDLIHFWEKITSIVLPLVDVK--------HCTISSIVKA 464 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE-WIDIITRLIDG 615 + CL+ + + + F + I+ + I+ + +I+ ++ Sbjct: 465 HIVCLRGLLTGST--------VFSYEKIEGFFDNFQSACANIRMSGIDIYYEILISVLHN 516 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + L + +I G NE + + L+ M+S L L Sbjct: 517 NLF---------VENYRLSSVNLYKREVVIFSGFNELNYGTGLH-STLLNNRMRSKLGLP 566 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + ++ G A+ + + TRSL+ S W++++ ++ + NL++ Sbjct: 567 SIQREKGYFAYMLYSFFYSDKIYITRSLKSFGKVNEESIWIKKIKIMAKIYNYKNLER-- 624 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILK 792 + YL + Y RP+P P + + S + ++ L+ +PY Y IL Sbjct: 625 EDYLRSENGCTNSVTNLCYLRPQPNPEINHRVMAFNILSTTAVEILVKNPYVFYLNNILN 684 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + + D G + HN++ + + N+ + L+K K P + Sbjct: 685 ILPYKDINEKFSMRDFGIIVHNVLHKYLVTPKNQ--QDYERLIKIAESEFLNKYKNFPQV 742 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + I F +I+ F E S+I+KI I + + DR++ LK Sbjct: 743 ETILWPKFQQIAEQFFEMNLNRNSNIDKIITEHFFSWEIN-NNVKIISKCDRVECLKDNS 801 Query: 913 VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + I DYKTG P + + I Q+ ++A +K I ++L Y ++ + Sbjct: 802 IAIIDYKTGVIPSQLDISRGIALQMIIQALTVKKSLKKNI-----SDLMYWKIGAED--- 853 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + +E+ EK+ L E++ +PFI+ S YD L R+ E Sbjct: 854 --IKVVSIDNYEEIMEKTEIALKELILEYLVNRKPFIA----SHDIAGFGSYDLLIRLKE 907 Query: 1033 W 1033 W Sbjct: 908 W 908 >gi|315609028|ref|ZP_07883998.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249232|gb|EFU29251.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 967 Score = 310 bits (793), Expect = 1e-81, Method: Composition-based stats. Identities = 136/1090 (12%), Positives = 286/1090 (26%), Gaps = 205/1090 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + ++ + L+ + P KRA L + + P Sbjct: 4 FLETVAHDIITKYGTD-----------LSRTAVVFPNKRASLFLNEHLARLAD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ L + L + + Sbjct: 52 AYITISDLFRRHSKLATADPIKL------------ICDLHKSFVACTGLNETLDHFYGWG 99 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 L +S ++ + D+H + + + LK ++ Sbjct: 100 QLLLSDF------DDIDKNMADAAKVFANLRDIHEFDDASFLTEEQK--EMLKKFFSNFS 151 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARLMSTVAN 251 + + L R E G I G G +L V Sbjct: 152 D-----------DHNSELKRRFLELWSH--FGDIFNDYNQRLGQQGLA-YEGKLYREVVE 197 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 +P + + Q L D L + + Sbjct: 198 NPQ----------------------LTFEYDTYLFVGFNMMQKVELALCDRLKREGKARF 235 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 M G + + + + D+ I A E +A Sbjct: 236 YWDYDHYYMSGDNEAGHYIRQYLAHYPNEIAPDDAHDPYDNLQRTKDITYISASTENIQA 295 Query: 372 ISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 I+ LR + + ++A++ AD +L + V L +++I+ G PL + S++ Sbjct: 296 RYISTWLRENNRIADGSRTAIVMADESLLQTVVHCLPPEVKDVNITTGYPLQQSPFFSLV 355 Query: 431 TSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L + L++HP + P+ L R + Sbjct: 356 MQLFALCTMGYQRQSNRYRLHFVNRLLRHPYTPYVSPK------YRDLIDDLNRHKRFYP 409 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + + P + + + ++ I + ++ Sbjct: 410 ARDSLT------LGDEGLELLFPDMGDFDNRKLIGWMLAVLKRIGVNARGVADPLFQESL 463 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 ++ +L + + Sbjct: 464 FRSYTLLNRLKELM------------------------------------DAGDLTVDTA 487 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +L V E + ++G LE+R L+FD ++L NEG PK F Sbjct: 488 TLERLTGQLFQSTGVPFHGEPVVGIQVMGVLETRNLDFDHVLLLSANEGNLPKGINDASF 547 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLV 721 + ++ L T + + A+ F + T + + T SR++ +L+V Sbjct: 548 IPYSIRHAYGLTTIDNKVAIYAYYFYSLIQRATDVTMTYNNATEDGHTGEMSRFMLQLMV 607 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G + GQ ++ + K + + S + I + Sbjct: 608 ESGHPIVRRSLQAGQEP--------KRKEETDITKDKAVEEQLNRFTSLSPTAINTYLRC 659 Query: 782 PYAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH------- 833 + R I ++ + D G +FH + + Sbjct: 660 QKRFFYRYIAHIEEPDTPDEDAIDNRIFGNIFHKACQNIYLSFAGPGDVACDEKGEPQLL 719 Query: 834 ------------------LMKQIIDSHFEKENLPP----------HIDIIWRHLFHKISH 865 +++++D F +E + +I R++ Sbjct: 720 HPLTIRQGDIDSYLKSKMRIEEVVDDAFREELFHVKRQGFRPEYNGLQLINRNVIVSYVR 779 Query: 866 SFLEHEEKIQSSIEKIFVNIP------AKMAIESIGIHLTGFADRID----LLKSGFVDI 915 L + + + + + + + G DR+D L + + Sbjct: 780 QLLRLD-SRHTPFTILGLELKVFDTVTFTAGSAERTLQIGGSIDRLDAVASELGGERIRV 838 Query: 916 TDYKTG-----DNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA-NL 960 DYKTG E D Q L + + S + V+ L Sbjct: 839 IDYKTGNKAQAKIKTIEEIFSGEDISRKHTDYYLQTMLYSLIVDRSSRHNPEGEPVSPAL 898 Query: 961 FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 +I+ + D D+K SA ++ L ++T + + PF++ + Sbjct: 899 LFIQHTTGDEYDPTLTLGDEKITSAGRYRDEFTDRLKGVLTDIFDLSHPFVA--TADRRH 956 Query: 1019 NIQSEYDHLA 1028 Y + Sbjct: 957 CDTCPYRQIC 966 >gi|118593730|ref|ZP_01551099.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614] gi|118433640|gb|EAV40303.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614] Length = 429 Score = 310 bits (793), Expect = 1e-81, Method: Composition-based stats. Identities = 137/426 (32%), Positives = 225/426 (52%), Gaps = 5/426 (1%) Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 ++ ++ + ILG +E+RL FD ILGGLNEG+WP+ T +P+L+R M+ D+ L+ Sbjct: 1 MRRRLPGDQRVQILGPMEARLQTFDFAILGGLNEGIWPQRTRNDPWLNRPMKRDMGLEPP 60 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 E+ +G AAHDF G R ++ +R+ R + PT+ASRWLQRL L G D L+ +G Sbjct: 61 ERRLGAAAHDFAQGMGARRVLLSRAARSDGAPTVASRWLQRLTTLAGPDLTKQLEAQGAI 120 Query: 738 YLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 Y +LD RP+P P L A+P++ S +EI++LI DPYA++AR +L+L + Sbjct: 121 YSALAAQLDRPEGAVRPASRPQPRPLLAARPKSLSITEIERLIRDPYAIFARHVLELQPV 180 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 +P D+G L H+ + + + + + +I + FE + P I +W Sbjct: 181 DPIGGEPGAADKGNLIHDALADFLLTWTGPFDDKAVKALTEIGEELFEPLDAFPAIRALW 240 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVD 914 F KI+ F+ +E + + + F+ I +M + L G ADRIDLL G + Sbjct: 241 WPRFQKIAAGFVAYEARRSQHVSQRFLEIGGGVEMKLPGFDFRLRGRADRIDLLSGGGLS 300 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKID- 972 + DYKTG P ++ L+ PQL LEAA ++ F + ++ L Y++LK + Sbjct: 301 VVDYKTGQVPSQKQVDALLSPQLPLEAAMIRRFGFKDVPADAPISELLYLQLKGGSEPVI 360 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + K+ ++L E + K L +++ + ++S R+ + + +YDHLAR E Sbjct: 361 EAPRNPKETPLEDLVEDAWKRLEQLIAHYVREDTGYLSRARVMRERQMGGDYDHLARTQE 420 Query: 1033 WREEYD 1038 W + Sbjct: 421 WALGSE 426 >gi|288926529|ref|ZP_06420447.1| conserved hypothetical protein [Prevotella buccae D17] gi|288336671|gb|EFC75039.1| conserved hypothetical protein [Prevotella buccae D17] Length = 967 Score = 309 bits (791), Expect = 2e-81, Method: Composition-based stats. Identities = 135/1090 (12%), Positives = 284/1090 (26%), Gaps = 205/1090 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + ++ + L+ + P KRA L + + P Sbjct: 4 FLETVAHDIITKHGTD-----------LSRTAVVFPNKRASLFLNEHLARLAD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ L + L + + Sbjct: 52 AYITISDLFRRHSKLATADPIKL------------ICDLHKSFVACTGLNETLDHFYGWG 99 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 L +S ++ + D+H + + + LK ++ Sbjct: 100 QLLLSDF------DDIDKNMADAAKVFANLRDIHEFDDASFLTEEQK--EMLKKFFSNFS 151 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARLMSTVAN 251 + + L R E G I G G +L V Sbjct: 152 D-----------DHNSELKRRFLELWSH--FGDIFNDYNQRLGQQGLA-YEGKLYREVVE 197 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 +P + + Q L D L + + Sbjct: 198 NPQ----------------------LTFEYDTYLFVGFNMMQKVELALCDRLKREGKARF 235 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 M G + + + + D+ I A E +A Sbjct: 236 YWDYDHYYMSGDNEAGHYIRQYLAHYPNEIAPDDAHDPYDNLRRTKDITYISASTENIQA 295 Query: 372 ISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 I+ LR + + ++A++ AD +L + V L +++I+ G PL + S++ Sbjct: 296 RYISTWLRENNRIADGSQTAIVMADESLLQTVVHCLPPEVKDVNITTGYPLQQSPFFSLV 355 Query: 431 TSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L + L++HP + + L R + Sbjct: 356 MQLFALCTMGYQRQSNRYRLHFVNRLLRHPYTPYVSSK------YRDLIDDLNRHKRFYP 409 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + + P + + + ++ I + ++ Sbjct: 410 ARDSLT------LGDEGLELLFPDMGEFDNRKLIGWMLAVLKRIGVNAREVADPLFQESL 463 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 ++ +L + + Sbjct: 464 FRSYTLLNRLKELM------------------------------------DAGDLTVDTA 487 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +L V E + ++G LE+R L+FD ++L NEG PK F Sbjct: 488 TLERLTGQLFQSTGVPFHGEPVVGIQVMGVLETRNLDFDHVLLLSANEGNLPKGINDASF 547 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLV 721 + ++ L T + + A+ F + T + + T SR++ +L+V Sbjct: 548 IPYSIRHAYGLTTIDNKVAIYAYYFYSLIQRATDVTMTYNNATEDGHTGEMSRFMLQLMV 607 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G + GQ ++ + K + + S + I + Sbjct: 608 ESGHPIVRRSLQAGQEP--------KRKEETDITKDKAVEEQLNRFTSLSPTAINTYLRC 659 Query: 782 PYAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH------- 833 + R I ++ + D G +FH + + Sbjct: 660 QKRFFYRYIAHIEEPDTPDEDAIDNRIFGNIFHKACQNIYLSFAGPGDVACDEKGEPQLL 719 Query: 834 ------------------LMKQIIDSHFEKENLPP----------HIDIIWRHLFHKISH 865 +++++D F +E + +I R++ Sbjct: 720 HPLTIRQGDIDSYLKSKMRIEEVVDDAFREELFHVKRQGFRPEYNGLQLINRNVIVSYVR 779 Query: 866 SFLEHEEKIQSSIEKIFVNIP------AKMAIESIGIHLTGFADRID----LLKSGFVDI 915 L + + + + + + + G DR+D L + + Sbjct: 780 QLLRLD-SRHTPFTILGLELKVFDTVTFTAGSAERTLQIGGSIDRLDAVASELGGERIRV 838 Query: 916 TDYKTG-----DNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA-NL 960 DYKTG E D Q L + + S + V+ L Sbjct: 839 IDYKTGNKAQAKIKTIEEIFSGEDISRKHTDYYLQTMLYSLIVDRSSRHNPEGEPVSPAL 898 Query: 961 FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 +I+ D D+K SA ++ L ++T + + PF++ + Sbjct: 899 LFIQHTTGDDYDPTLTLGDEKITSAGRYRDEFTDRLKGVLTDIFDLSHPFVA--TADRRH 956 Query: 1019 NIQSEYDHLA 1028 Y + Sbjct: 957 CDTCPYRQIC 966 >gi|304382259|ref|ZP_07364766.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304336616|gb|EFM02845.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 963 Score = 304 bits (778), Expect = 5e-80, Method: Composition-based stats. Identities = 143/1073 (13%), Positives = 313/1073 (29%), Gaps = 177/1073 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L+ L+ + I P KRA L E + K P Sbjct: 5 FLQCVAQDLIEKYGNR-----------LSRIAIVFPNKRAALFLNEELAK-AAGKPLWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + L +S++ + I + P + + L Sbjct: 53 AYITISDLFRRHSRLTVGDPIKL---ISDLYKCFS-----DITGSNEPIDRFYGWGQLLL 104 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + A + + + +DL L E+ LK +++ Sbjct: 105 ADFDDIDKNMAEASRVFANLRDVHEY----DDLSYLTEEQKA--------LLKRFFHHFS 152 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E L L+ + GA Sbjct: 153 E-----------EQHSLLKEKFIRLWNN----------LYEVYRQFNDLIKSQGIAYEGA 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + ++ N Q L L + Sbjct: 192 LYREVVEDVGVKY----------NYDCYIFVGFNLLQKVEQTLFSKLKSDGKACFYWDFD 241 Query: 317 SNEMYGRSMVISKSFL---PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 M + ++ + ++++ + + ++ I A E +A Sbjct: 242 KYYMPKEPSPVHEAGYYIGQYLKYFPNELNSHDDELYDNLRHPKEMTYISAPTENIQARY 301 Query: 374 IAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 IA LR + E +K+A++ + +L V L ++I+ G PLS + +++++ Sbjct: 302 IADWLRENGRIEAGRKTAIVLCNEDLLPTVIHCLPPEATQVNITTGYPLSQSPVAALVSQ 361 Query: 433 LLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 LL +I+ L++HP A++ A+ E K Sbjct: 362 LLVLRSYNKSNRRCRYRLSSISPLLRHPYARYISENSGRLLARLRSERRFFPEEKELTID 421 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L L + N W + L+ I ++ T+ Sbjct: 422 EGLTLLFHTEPSDAPENLQTCRW-----------LLTLIRRIAINLSAQRMEATDPLMQE 470 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++ + ++ Sbjct: 471 SLFRMYTLLNRLCALIEE--------------------------------EDLAVDSNTL 498 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I +L+ ++ E + + ++G LE+R ++FD +++ NEG PK F+ Sbjct: 499 ERLIQQLVSSTSIPFHGEPAVGIQVMGMLETRNIDFDNILILSCNEGNMPKGLNDASFIP 558 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLG 723 ++ L T + + +++ F +H+ + T SR++ +LLV Sbjct: 559 HAIRQAYGLTTTDHKVAISSYYFHRLIQRAKHVTLVYNNATEEGKTGEMSRFMLQLLVES 618 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + G+ T + + S + I + + P Sbjct: 619 HQKIARQTLQAGRKP-----IFSKPTPIEKGEDVMQRLTQQLDY--ISPTAINRYLRCPL 671 Query: 784 AVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINK---------NTPEINH 833 Y ++ + +++ D G +FH + K+ +++ + H Sbjct: 672 QFYYNQVAGIKEPENMEEEEIDNRSFGNIFHRASELIYKEHVHRETVTETDIDRFLKSPH 731 Query: 834 LMKQIIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 L+ I+ F++E + +I + + L+ + + Sbjct: 732 LLAAIVKQAFDEELFNIKEANRQPMNYNGLQLINQKVIVHYLKQLLQIDR-RLAPFTIQG 790 Query: 883 VNI----PAKMAI--ESIGIHLTGFADRIDLLKSGF----VDITDYKTGD--NPKKETAQ 930 + + ++ I + G DR+D + + + DYKTG P+ + Sbjct: 791 LEKKVITSFTITTSQGTLNIKVGGMVDRLDRVSDNQGGVLLRVVDYKTGSGQQPRLSDVE 850 Query: 931 KLID------------PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITND 977 ++ D Q L + ++ D V+ L +I+ D Sbjct: 851 EVFDTTKILTKHSDYYLQTLLYSLIVRTSKEYNPDDLPVSPALLFIQHSGADNYDPTLFF 910 Query: 978 KKKYSAD--ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K+ AD + +E+ ++++T + PFI + Y L Sbjct: 911 GKERIADVRDYAEEYETRFMQVLTEIYEPSIPFIPTDNP--RICATCPYRQLC 961 >gi|225677121|ref|ZP_03788121.1| hypothetical protein WUni_006090 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590825|gb|EEH12052.1| hypothetical protein WUni_006090 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 903 Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats. Identities = 198/1019 (19%), Positives = 351/1019 (34%), Gaps = 206/1019 (20%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ + + L+ E R + + + +P KR + L S F Sbjct: 3 RVFTV--NVD--ESLFDVLVQHIFSEYER------EKIPEIKVILPCKRDVIALLSAFKN 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +K ILP I SL ++ EE DL+L+ + +S I+R L L + IL W K D Sbjct: 53 YNAEKCIILPEIVSLENIDEE----DLILNLDRVKVISPIKRTLLLIQFILEWNRKNNDN 108 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I LA +L +D I++ + ++ + Sbjct: 109 FP-----------------IDLAYSLPSSLDKIQSTQTT-------DCYQFDEHSKKIEN 144 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + ++ W++ L +L + ++ + L K II G L+ Sbjct: 145 FISLLTETWSKTLKDLEVVDILKHKSDYINNMITSLQKDQ--HIIFVGI----GKDKSLI 198 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + P G I+LP L+ I W + +K H QY L LLD+L + Sbjct: 199 KAIYDLPFGKIILPNLNLKIKEKDWKLLDKK-------------HYQYCLKDLLDYLKVD 245 Query: 307 REDVKRLGNVS---------------NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 R DV L + +++++P + M P Sbjct: 246 RRDVSFLPEACSGVIPVPRHWDPENLTLNERTRWLYNENWIPVSATWMTEERAGITGSPE 305 Query: 352 I----------------QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395 ++ +I D+ EEA ++ + +E + +L+ D Sbjct: 306 EYLDYVFDTTADLSKVSSGHVGNIEVITCDSREEEAQVTSLIIE---NEGYENISLVVFD 362 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + LA R L+R I + ++L + + +++ +L+KH L Sbjct: 363 KLLAAR-IACLSRQHSAIPE-------NYPYITLLLYSIEVLTSNWSSVSLLSLLKHRLV 414 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 FG+ ++ +R + E+ LR + + ++ + K + Sbjct: 415 TFGYTQEEYTRILSEFEIEILRNFSTNGLSDIINAINAHKKLKYKED------------- 461 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 +L++ + PL+ N SI D + C+ + + Sbjct: 462 ----ILLIISKLEVIFNPLLR--------SINCSIFDVVATHLQCINILSG--------I 501 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 F E + + ++ + + I+T ++ E Sbjct: 502 NFSELNSEIGNFTCNFSNACEGVEIKCSLELYSQILTLFLEKEFFS---------VASDL 552 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 + L + +IL G NE ++ L+ + + NL +A++ G + Sbjct: 553 NKFSLYHNKVVILAGFNEAPSFQSP----LLNALTREKFNLPSAQEEQGYFFYTLHNLFC 608 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + TRSL LQRL +L L+ Y DW R L+ Sbjct: 609 ASKVYITRSLSHRKPM-----LLQRLEIL--------LQGSKYPYRDWLRILNTPECTVP 655 Query: 754 YKRPKPFPPLEAQ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 +P P P E + + S S I++LI +PY+ Y IL L + P + GT Sbjct: 656 CTQPMPKPQTEVRKEKMQVMSCSAIEKLIRNPYSFYVEYILGLKQLRDLNFKPSILEFGT 715 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 + HNI+ ++ + + I F + +W KI SF+E Sbjct: 716 MVHNILARYLRNKKSP---------MSIAREAFSTSQF--NFSNMWWVRLQKIIQSFVEF 764 Query: 871 EEKIQSSIEKIFVNIPAKMAI---ESIG---------------------IHLTGFADRID 906 +E + + + I + I LT DR++ Sbjct: 765 DETRSNY---VELEKSFSCPIFHIPARDTGSCDQYETAWMTDRDLIPQEILLTARCDRVE 821 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 L SG V I DYK G P E PQL L+A A++ I R+V+ L Y +L Sbjct: 822 YLPSGQVAIIDYKLGTPPSNEEVMSGFFPQLILQALAVEH-----ITKREVSELAYWKL 875 >gi|300726046|ref|ZP_07059504.1| conserved hypothetical protein [Prevotella bryantii B14] gi|299776653|gb|EFI73205.1| conserved hypothetical protein [Prevotella bryantii B14] Length = 955 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 146/1070 (13%), Positives = 310/1070 (28%), Gaps = 178/1070 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + +++ L+ + + P KRA L E + K P Sbjct: 4 FLQYIAQDIISKYGTN-----------LSRIAVVFPNKRASLFLNEELARLAD-KPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ L + ++ ++ + + + + Sbjct: 52 SYITISDLFRRHSKLQAGDPIKL---ICDLHKVFC-----SCTGSSESLDEFYGWGQLLI 103 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + A + + I +D+ L +E+ + F S+ Sbjct: 104 ADFDDIDKNMADADKVFANLKDIHE----LDDVTYLTDEQK----EMLQKFFSNFSEEHN 155 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 +L E + + + + + +I G L V + Sbjct: 156 TKLKE---------RFLSLWSHFDDIYHQFNTRLIEQGIA----YEGALYRKVVEDADIE 202 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 N + Q L D L + + Sbjct: 203 ----------------------FNFDTYLFVGFNMMQKVELSLCDRLQKQGKAKFYWDYD 240 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 M D + I + V I A E +A ++ Sbjct: 241 DYYM---QTEAGTYIRQYLAHYPNELDNTNSNIYHNFTRPKQVTYISAATENIQARYVSE 297 Query: 377 ALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 L+ + E +++A++ AD L V L ++++ G PL+ T SS + +L+ Sbjct: 298 WLKANNRIEAGRRTAVVMADEALLNTVIHSLPEEVTKVNVTTGYPLAQTPVSSFVETLIQ 357 Query: 436 AI-------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + +++HP A++ + + +V+ R + D+ Sbjct: 358 LQTIGHPKDTDRFRLHQVNAILRHPYARYISD--NCKEVYDNINIVSKRYYPSMKDLAGE 415 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + + T H + LV + + + + Sbjct: 416 DENLALLFSDLSAETQYLHTK------------RLVTWLCDVLQCTGHHAKDDKDALFQE 463 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S+ L + + ++ + + + Sbjct: 464 SLFRMYTLLNRLVGLMDT-----------------------------GDLEIDIQTFTRL 494 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 +T+LI T+ E + + ++G LE+R L+FD +++ NEG PK + F+ + Sbjct: 495 LTQLIQSTTIPFHGEPAVGIQVMGVLETRNLDFDHVLILSCNEGNLPKGVNDSSFIPYSI 554 Query: 669 QSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTD 726 + L T + + A+ F + + + T SR++ ++LV Sbjct: 555 RKAYGLTTVDNKVAIYAYYFHSLLQRAGDVTLIYNNSTEDGHTGEMSRFMLQMLVESPFL 614 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + GQ + R+ + + Q T S S I Q + Y Sbjct: 615 IKQKSLRAGQIPISTHRE--------AIPKDEIVLNKLQQINTLSPSAINQYLFCQLRFY 666 Query: 787 ARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKR------INKNTPE---INHLMK 836 R I + +D D G +FH+ + + E L+ Sbjct: 667 YRYIAGISEPDENDEDQIDNRIFGNIFHHASELFYNQFGKGAVIQQGDIDEYLKRPELLG 726 Query: 837 QIIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 +++D F ++ + II R + L + ++ + I Sbjct: 727 KLVDEAFREDLFNIKDPHGYLPEYNGLQIINREVILNYILQLLRLDRELTP-FTILGTEI 785 Query: 886 PA------KMAIESIGIHLTGFADRID---LLKSG-FVDITDYKTGDNPKKE-------- 927 K++ + + G DR+D + G + + DYKTG P ++ Sbjct: 786 GVYMDTQIKISTGQRSLRIGGLIDRLDSINTMPEGERIRVVDYKTGVLPSRKVSSIDDIF 845 Query: 928 ------TAQKLIDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCIT--NDK 978 Q L + ++ D V+ L +I+ D + Sbjct: 846 GTEFIHQMHSDYYLQSFLYSYIIRHNLKYNADNLPVSPALLFIQHTGGKDYDPTLMIGKE 905 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K D +++ K L E++T + F + Y+ L Sbjct: 906 KVIDIDTYADEYSKKLHEVLTDIFEPVLSF--EPTEHKDRCTLCPYNKLC 953 >gi|198277204|ref|ZP_03209735.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135] gi|198269702|gb|EDY93972.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135] Length = 960 Score = 301 bits (769), Expect = 6e-79, Method: Composition-based stats. Identities = 150/1073 (13%), Positives = 299/1073 (27%), Gaps = 182/1073 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +++ L + V + P KRA + + + P Sbjct: 7 FLKQVAADLYRKMNGD-----------FTKVAVVFPNKRASLFFNEYLAQESD-RPVWSP 54 Query: 77 IIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 S+ ++ + S +L I E W L D Sbjct: 55 AYVSISELFRQSSQWVTGDSIKLVCDLYKVFREITGSKESLDEFYFWGEMLISDFDDADK 114 Query: 133 ESP--LSLPISPANAIWLAKNLADIIDIIETEEKK--WEDLHALKNEKYGMWWLLAADFL 188 +L + + L D ++ + E + + + + ++ D L Sbjct: 115 NMADTKALFSNLKDLNKLTGE-YDFLEEGQKEALSQFFRNFSIEQVTELKRRFISLWDVL 173 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + E L E + + + + + G L S Sbjct: 174 GDIYTQYKELLREQGIAYEGMLYREVTETMD--VQQFPYDKYVFVGFNVLNKVEQTLFSK 231 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + + + HP Sbjct: 232 L----------------------HEAGKALFYWDYDTFYLNKHPH--------------- 254 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + E R++ S LP D N ++ IE+ E Sbjct: 255 -------EAGEFIRRNLKNFPSELPSSLFDHLNH-------------PKEITFIESPTEN 294 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + +R +L EN+K++A++ + + + V L +I+I+ G PLS T S Sbjct: 295 GQARYLPQWIRKNLTENEKETAVVLCNEAMLQPVLHSLPDNVRHINITMGFPLSQTPAYS 354 Query: 429 ILTSLLNAI-------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + +LL F + +++KHP + E LE N+ Sbjct: 355 FVKTLLELHIAGYNSRSGRYQFAEVISVLKHPYTQLLSEE------AAPLEKELTEKNRF 408 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 +L E E LL + Sbjct: 409 YPLPSEL--------------------------ERDEALSLLFKPCSHNLELCKR----- 437 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKA 600 ++D K + L L+ E K+ + ++ Sbjct: 438 --------LADILKQVAQLYRKQAASTSDALDQLYREALFKSFTMVNRFHALLESKDLEV 489 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + ++ R++ ++ E + + ++G LE+R L+F +IL +NEG PK Sbjct: 490 QPTTFHRLLVRVMSTASIPFHGEPAIGMQVMGVLETRNLDFRHVILLSVNEGQLPKAGGD 549 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL-RENNIPTIASRWLQR 718 F+ ++ + T + I A+ F + + SR++ + Sbjct: 550 ASFIPYNLRKAFGMTTIDHKIAVYAYYFYRLLQRAEKATLLYNTVSDGMNRGEMSRFMLQ 609 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 LL+ G + Q + + + + F S S + Sbjct: 610 LLIEWGYPVQRKQLEAEQSPIASSPICIPKSPDIMKRMQSVFDVRVNPKALLSPSALNCY 669 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 ++ P Y + + L + D G++FH + K+ ++ + Sbjct: 670 LDCPLKFYYKYVAGLAAPEEVSAEIDSAKFGSIFHYAAEHIYKELTAHGKVINKDTLEAL 729 Query: 839 IDSHF-------------------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + ++ + +I + + L ++ + Sbjct: 730 LKEEVKLQNYVDNGFKELFFHLPADERPEYNGVQLINSAVILRYIQQLLRNDL-RHAPFT 788 Query: 880 KIFVNIPA--KMAIESIGIHLT----GFADRIDLLKSGFVDITDYKTG----DNPKKETA 929 + + I++ + G DR+D K + I DYKTG P E+ Sbjct: 789 FVGSEQRVMEDVEIQTPKGAIRSRMGGIIDRMD-SKDNVLRIVDYKTGGKADTPPSVESL 847 Query: 930 QKL------IDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKK--- 979 Q L AA + + D RKVA L YI + K+ Sbjct: 848 FTPGPKRPNYVFQTFLYAAIVCRKLRERNDDRKVAPALLYIHRAAAEDYSPVVQLKESYN 907 Query: 980 ----KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L E+ L ++ + N + F E ++ + Sbjct: 908 KTTPVEDFSLLEEEFRTRLQALLEEIFNPDLSF--SQTEEEDRCTYCDFKEIC 958 >gi|265753492|ref|ZP_06088847.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235206|gb|EEZ20730.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 959 Score = 300 bits (768), Expect = 7e-79, Method: Composition-based stats. Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSSITVEKTPDVMRQMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQRLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|212693030|ref|ZP_03301158.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855] gi|212664397|gb|EEB24969.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855] Length = 959 Score = 300 bits (767), Expect = 9e-79, Method: Composition-based stats. Identities = 145/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + Q TPL Sbjct: 417 GKD---------------------------------EFLTQLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSSITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|282880687|ref|ZP_06289389.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281305413|gb|EFA97471.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 952 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 144/1069 (13%), Positives = 295/1069 (27%), Gaps = 181/1069 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL L+ + + P KRA L +++ + P Sbjct: 5 FLEYVAKDLLEKFGTN-----------LSHIAVVFPNKRASLFLNKYLAQLSD-RPLWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + T + L + ++ + I + + + E L Sbjct: 53 SYLTISDLFRQHSTLTVGDPIKL---ICDLHKSF-----ITCTGREDTLDVFYAWGELLL 104 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-LLAADFLKIASKYW 195 + + A + + I +D+ L + F Sbjct: 105 ADYDDIDKNLADADKVFANLQNIHE----LDDISYL-----SEHQKQILQKFFSNF---- 151 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + N + + + + + + + + G L V + N Sbjct: 152 -----DENHHTELKRRFIELWSHLSDIYHHFNEKLSLQGLA----YEGALYRNVVSDKN- 201 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 L I+ Q +L L + Sbjct: 202 ------LSFEFDQYIFVG---------------FNVLQQVEQELFRHLKSMGKAKFYWDF 240 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 M S D I K + + A E +A I+ Sbjct: 241 DDYYMSDEKQEASHFIRQYLDVFPNELDCHNADIYQQFKQPKQITYLSAPTETIQARYIS 300 Query: 376 IALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 L+ + E K+A++ D ++ + V + ++I+ G PL+ + +S++ LL Sbjct: 301 EWLQHNGRMEAGIKTAIVMCDESILQTVIHCIPPEVSKVNITTGYPLAQSPVASLIHQLL 360 Query: 435 NAIFKLNDF------MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + ++ HP K+ LS L +L Sbjct: 361 KLQLSSYAHNGKYRLTEVKRMLSHPYIKY------LSENAPELMANLEENKHYFPTRKEL 414 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 L NL Sbjct: 415 S----------------------------------------VDAGLTLVFKELVDDSTNL 434 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 +++W + + D TL + ++I ++ + + Sbjct: 435 YLTEWILEILQLIGKNGRDSEDAFFQ-ESVFRMYTLMNRLHELIH-SGDLRIQLTTYEKL 492 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 I +LI ++ E + + I+G LE+R L+FD +++ NEG PK F+ + Sbjct: 493 ILQLIQNTSIPFHGEPAEGIQIMGVLETRNLDFDHILILSCNEGNMPKGVNDVSFIPYSI 552 Query: 669 QSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP-TIASRWLQRLLVLGGTD 726 + L T + + A+ F + T + + SR++ ++LV G Sbjct: 553 REAYGLTTVKHKVAIYAYYFHRLLQRASDITLTYNNSTEGSHKSEMSRFMLQMLVESGHP 612 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 GQ + ++ + + S + I + + Y Sbjct: 613 IQKIAMLSGQEIKH--------HEAHPIEKKEMVMEVLYNMNQISPTAINRYMRCQLQFY 664 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----------TPEINHLMK 836 I KL D D G +FH + +++ + L++ Sbjct: 665 YNTIAKLYEPEP-DNDIDNRMFGNIFHRSAELIYTSLQHESKWIEPTELNKLRTKSQLLE 723 Query: 837 QIIDSHFEKENLPP----------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + +D F +E + +I R + L+ + + + + + Sbjct: 724 RFVDQAFYEEIYKSKDKVRPIEYNGLQLINRKVIIDYLKRLLKID-EALAPFRILSLEER 782 Query: 887 AKMAI------ESIGIHLTGFADRIDL--LKSG--FVDITDYKTGDNPK--KETAQKLID 934 I I + G DR+D G + + DYKTG + + Sbjct: 783 VNTTISFETAQGLKTITVGGIIDRLDEVTDPDGTHRIRVVDYKTGRPATSVPTDVEDIFS 842 Query: 935 ------------PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDC--ITNDKK 979 Q L A ++ V+ L +I+ D + + +K Sbjct: 843 DDNLTEKHKDYYLQTFLYANIVRQHQELNPHGLPVSPALLFIQRNPGDDFDPTLLLSKEK 902 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 S K+L +++T + + PF K Y + Sbjct: 903 VSDIGTYSSDFSKHLQQVLTDMYDSSHPFT--PTQDNKRCTYCPYKRIC 949 >gi|237709836|ref|ZP_04540317.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455929|gb|EEO61650.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 959 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLIYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSSITVEKTPDVMRQMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGESRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|254881837|ref|ZP_05254547.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641142|ref|ZP_07995845.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A] gi|254834630|gb|EET14939.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387273|gb|EFV68149.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A] Length = 959 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 145/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTKGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K I +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGIQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|237725570|ref|ZP_04556051.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436257|gb|EEO46334.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 959 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 144/1065 (13%), Positives = 296/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEMGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNRVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWNVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYIFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|190570669|ref|YP_001975027.1| hypothetical protein WPa_0219 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356941|emb|CAQ54327.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 932 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 193/1090 (17%), Positives = 363/1090 (33%), Gaps = 224/1090 (20%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ + + L+ E R + + I +P KR + L S F Sbjct: 3 RVFTVNVN----ESLFDVLVQHIFSEYER------EKIPEIKIILPCKRDVIALLSAFKN 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 ++ ILP I SL ++ EE DL+L+ + ++ +R L L + IL W K D Sbjct: 53 Y---RTIILPEIVSLENIDEE----DLILNLDRVKVINPTKRTLLLIQFILEWNKKNNDN 105 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I L +L ++ + E + + A+ Sbjct: 106 FP-----------------IDLVYSLPSLLQYTQIEG----------DYQLDEHSKKVAN 138 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + K W++ L L + ++ + L K +I G G L+ Sbjct: 139 FINLLIKTWSKTLKGLGVIDILKHKNDYINNMINFLQKDQ--HMIFIGI-GKGEIYKLLI 195 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + P G I+LP L+ + W ++ +K H Q+ L LLD+L + Sbjct: 196 KAIYDLPFGKIILPNLNLKMNEKDWKSLDKK-------------HYQHCLKDLLDYLKVD 242 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIPNIQKCFSDVAL 361 R DV L + + S T D + ++ + Sbjct: 243 RRDVSFLSEACSGVIPVSSTGMTEERAGITGSPEEYLDYIFDTTADLSEVGGGSIENIEV 302 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I D+ EEA ++ ++ +E + ++L D+ LA R+ ++ Sbjct: 303 ITCDSREEEAQVTSLIIK---NEGYENASLFVFDKLLADRMACTISENYSY--------- 350 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++L + + + +A+ +L+KH L FG+ ++ +R + E+ LR Sbjct: 351 -----VTLLLYSIEILNSKWNGVALLSLLKHRLVTFGYAQEEYTRILSEFEIEVLRSFNT 405 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + ++ + K + + + ++ PL+ Sbjct: 406 NGLKDIINAINTCKKLRHKEDILIIISKLKII-----------------FNPLLYL---- 444 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600 N I D + C+ + N+ F E + + + + Sbjct: 445 ----VNYPIFDVASAHLQCVNVLS--------NINFLELNGEIGNFTRDFLNACEDVAIK 492 Query: 601 -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + I+ + + P+ + L + ++L G N+ + Sbjct: 493 CSLELYSQILILFLKRKFFSPENN---------LDKFSLYHNKVVVLAGFNDIPNFQ--- 540 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 NPFLS + + NL + ++ G + G + TR + + S L+RL Sbjct: 541 -NPFLSALNREKFNLPSVQEEQGYFLYTLRNLFGAGKVYITRLVSD-----RKSILLRRL 594 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIK 776 VL L++ Y +W R L+ +P P P E + + S S ++ Sbjct: 595 EVL--------LQEPKYPYRNWLRILNTPECIVPCTQPMPKPKTEVRQAKMQVMSCSAVE 646 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 +LI +PY+ Y IL L + P + GT+ HNI+ ++ + Sbjct: 647 KLIRNPYSFYVEYILNLRQLKDLNFKPSILEFGTMVHNILARYLRN---------EKSLM 697 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IES 893 I F +W +I SF+E + ++ ++ + I + Sbjct: 698 NIAREIFSSNRFH--FSNMWWVRLQRIIQSFVELD---RTGNNQVELEKSFSYPIFHIPA 752 Query: 894 IGIHLTG--------------------------------------------------FAD 903 L G D Sbjct: 753 RDTQLRGCCTTSTKNKGVIPVLDYLDPKNLIANEHTRQLCNKSWSDTRMTEEILLTARCD 812 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 R++ L G V I DYK G P E PQL L+A A++ ++V+ L Y Sbjct: 813 RVEYLPGGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----TTKKEVSELAYW 867 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 +L D ++ + L + ++ PFI+ + + Sbjct: 868 KLDYDKIKVIALKDYRQK-----MHEFQNILPDFLSNYLRDTTPFIASPYFDKFLRF-NI 921 Query: 1024 YDHLARVAEW 1033 Y L R+ EW Sbjct: 922 YKQLERIGEW 931 >gi|213019082|ref|ZP_03334889.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995191|gb|EEB55832.1| conserved hypothetical protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 936 Score = 299 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 193/1090 (17%), Positives = 363/1090 (33%), Gaps = 224/1090 (20%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 VFT+ + + L+ E R + + I +P KR + L S F Sbjct: 7 RVFTVNVN----ESLFDVLVQHIFSEYER------EKIPEIKIILPCKRDVIALLSAFKN 56 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 ++ ILP I SL ++ EE DL+L+ + ++ +R L L + IL W K D Sbjct: 57 Y---RTIILPEIVSLENIDEE----DLILNLDRVKVINPTKRTLLLIQFILEWNKKNNDN 109 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 I L +L ++ + E + + A+ Sbjct: 110 FP-----------------IDLVYSLPSLLQYTQIEG----------DYQLDEHSKKVAN 142 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 F+ + K W++ L L + ++ + L K +I G G L+ Sbjct: 143 FINLLIKTWSKTLKGLGVIDILKHKNDYINNMINFLQKDQ--HMIFIGI-GKGEIYKLLI 199 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + P G I+LP L+ + W ++ +K H Q+ L LLD+L + Sbjct: 200 KAIYDLPFGKIILPNLNLKMNEKDWKSLDKK-------------HYQHCLKDLLDYLKVD 246 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIPNIQKCFSDVAL 361 R DV L + + S T D + ++ + Sbjct: 247 RRDVSFLSEACSGVIPVSSTGMTEERAGITGSPEEYLDYIFDTTADLSEVGGGSIENIEV 306 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 I D+ EEA ++ ++ +E + ++L D+ LA R+ ++ Sbjct: 307 ITCDSREEEAQVTSLIIK---NEGYENASLFVFDKLLADRMACTISENYSY--------- 354 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++L + + + +A+ +L+KH L FG+ ++ +R + E+ LR Sbjct: 355 -----VTLLLYSIEILNSKWNGVALLSLLKHRLVTFGYAQEEYTRILSEFEIEVLRSFNT 409 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + ++ + K + + + ++ PL+ Sbjct: 410 NGLKDIINAINTCKKLRHKEDILIIISKLKII-----------------FNPLLYL---- 448 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA- 600 N I D + C+ + N+ F E + + + + Sbjct: 449 ----VNYPIFDVASAHLQCVNVLS--------NINFLELNGEIGNFTRDFLNACEDVAIK 496 Query: 601 -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + I+ + + P+ + L + ++L G N+ + Sbjct: 497 CSLELYSQILILFLKRKFFSPENN---------LDKFSLYHNKVVVLAGFNDIPNFQ--- 544 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 NPFLS + + NL + ++ G + G + TR + + S L+RL Sbjct: 545 -NPFLSALNREKFNLPSVQEEQGYFLYTLRNLFGAGKVYITRLVSD-----RKSILLRRL 598 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIK 776 VL L++ Y +W R L+ +P P P E + + S S ++ Sbjct: 599 EVL--------LQEPKYPYRNWLRILNTPECIVPCTQPMPKPKTEVRQAKMQVMSCSAVE 650 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 +LI +PY+ Y IL L + P + GT+ HNI+ ++ + Sbjct: 651 KLIRNPYSFYVEYILNLRQLKDLNFKPSILEFGTMVHNILARYLRN---------EKSLM 701 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IES 893 I F +W +I SF+E + ++ ++ + I + Sbjct: 702 NIAREIFSSNRFH--FSNMWWVRLQRIIQSFVELD---RTGNNQVELEKSFSYPIFHIPA 756 Query: 894 IGIHLTG--------------------------------------------------FAD 903 L G D Sbjct: 757 RDTQLRGCCTTSTKNKGVIPVLDYLDPKNLIANEHTRQLCNKSWSDTRMTEEILLTARCD 816 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 R++ L G V I DYK G P E PQL L+A A++ ++V+ L Y Sbjct: 817 RVEYLPGGQVAIIDYKLGSPPSNEEVMSGFFPQLILQALAVEY-----TTKKEVSELAYW 871 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 +L D ++ + L + ++ PFI+ + + Sbjct: 872 KLDYDKIKVIALKDYRQK-----MHEFQNILPDFLSNYLRDTTPFIASPYFDKFLRF-NI 925 Query: 1024 YDHLARVAEW 1033 Y L R+ EW Sbjct: 926 YKQLERIGEW 935 >gi|294775535|ref|ZP_06741045.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294450585|gb|EFG19075.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 959 Score = 298 bits (763), Expect = 3e-78, Method: Composition-based stats. Identities = 144/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESDS-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDVGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|167762882|ref|ZP_02435009.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC 43183] gi|167699222|gb|EDS15801.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC 43183] Length = 963 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 138/1083 (12%), Positives = 303/1083 (27%), Gaps = 196/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + + L+ I P KRA + + P Sbjct: 4 FLQSVAQDLYSKIGND-----------LSRTAIVFPNKRASLFFNEYLAAQSD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ ++ L V + ++ ++ P + E + Sbjct: 52 AYVNISELFRSLSPLKPGDPIRL---VCELYKVFR-----EETHSEEPLDDFYFWGELLI 103 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------- 183 S + A L + ++ ++ L + E ++ Sbjct: 104 SDFDDADKNLVDADKLFSNLQDLKNIMDDYDFLDQEQEEAIQQFFQNFSIDKRTQLKEKF 163 Query: 184 --AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 D L +++ + L EL + ++ + + G Sbjct: 164 ISLWDKLGDIYRHYRKNLSELGIAYEGMMYRHVIEELDT--DRLRYDRYVFVGFNVLNKV 221 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + + A+ D + + P Y Sbjct: 222 ETHFFQRLQDAGK-AMFYWDYDVFY-----------------TRLPHEQQPPYVHEAGEF 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + +L ++ + + Sbjct: 264 ILRNLKLFPNQLPET--------------------------------AFDVLRHPKKIRF 291 Query: 362 IEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 I A E +A + +R + +K++A++ + L V + N++I+ Sbjct: 292 ISAPTENAQARYLPQWVRTVVKSDTEASKEKENAIVLCNEALLLPVLHSIPPEVENVNIT 351 Query: 417 AGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G PL+ T S + +L+ + A ++KHP + LS Sbjct: 352 MGFPLAQTPVYSYINALMELQTTGYRRDTGRYTYEAALAVLKHPYTR------QLSATAE 405 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LE + N+ +LK + + ++ + Sbjct: 406 DLEKQLTKDNRFYPLPSELKK----------------DAFLEQVFTPQNGTAAICRYLTE 449 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + + +G TL + Sbjct: 450 LLREVAVIYRQEKDEEDIF----------------------NQLYRESLFKGYTLINRLL 487 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 +IE + + ++ RL+ + E + + ++G LE+R L+F LI+ L Sbjct: 488 SLIEN-DGLSLHTDTLKRLMNRLLTATNIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSL 546 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN- 707 NEG PK + F+ ++ + T E A+ F ++ + + Sbjct: 547 NEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYNTASDGL 606 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 SR++ + LV D + GQ + + T + + + Sbjct: 607 NRGEMSRFMLQFLVESPHDISRQYLEAGQSPQQSLKIEIHKTDEVLQRMYNAYDIRRHPN 666 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------- 820 +S S + ++ Y R + L + D GT+FH + Sbjct: 667 ALFSPSALNTYLDCRLRFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQDLTANG 726 Query: 821 KKRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFL 868 K+ ++ ++ ++ +D+ F++E +I + L Sbjct: 727 KEIRREDLEQLLRNDVRLQAYVDTAFKEEFFHVPAGEQPEYNGTQLIHSKVIASYLRQLL 786 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIES------IGIHLTGFADRIDLLKSGFVDITDYKTGD 922 ++ + + + +E + +++ G DR+D + I DYKTG Sbjct: 787 RNDLQ-YAPFRMEGMEQKVTETLEIETPSGMLPLNIGGTIDRMDSKGD-TLRIVDYKTGG 844 Query: 923 NP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 P E+ ++L P Q L AA + ++ +L YI Sbjct: 845 TPKTPESIEQLFTPADNRPNYIFQTFLYAAIMCRKQGLKVAP----SLLYIHRAASESYS 900 Query: 973 CITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + ++ + L ++ + N E+PF K ++ Sbjct: 901 PVIEMGAPRQPKVPVNNFAFYEDEFRERLSALLQEIYNPEEPFTQTEDA--KKCEYCDFK 958 Query: 1026 HLA 1028 L Sbjct: 959 RLC 961 >gi|150005967|ref|YP_001300711.1| hypothetical protein BVU_3465 [Bacteroides vulgatus ATCC 8482] gi|149934391|gb|ABR41089.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 959 Score = 297 bits (761), Expect = 4e-78, Method: Composition-based stats. Identities = 144/1065 (13%), Positives = 297/1065 (27%), Gaps = 164/1065 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L T LA + P KRA + + P Sbjct: 4 FLKLVAADLYKHTEGN-----------LAHTAVVFPNKRAGLFFNEYLAQESES-PIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ ++ L + L I+R + Sbjct: 52 AYVSISELFRSLSPWEVGDPVKL------------VCELYKIFRRET------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + + + L D + + + L + D Sbjct: 87 QSTETLDDFYFWGEMLISDFDDADKNKVDTDKLFS-----NLQDLRNIMDDYTFIDDEQE 141 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + + + + AL I G S+ + + Sbjct: 142 EAIRQFFQNFSIERRTALKERFISLWDVLGN---IYKGFRESLASQNIAYEGM------- 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG-N 315 + + + L L + V + Sbjct: 192 ---------MYRHVIEHLDVDKLPYEKYVFVGFNVLNKVEHTLFTQLKDAGKAVFYWDYD 242 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R V ++ + L ++ +V I + E +A + Sbjct: 243 EFYMKENRQAVTHEAGEFIRRNLRDFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLP 302 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L +K++A++ + L + V L +++I+ G PLS T S L +LL Sbjct: 303 QWIRNNLTTPEKETAVVLCNEALLQPVLHSLPAEVKHVNITMGFPLSQTPVYSFLIALLE 362 Query: 436 AIFKLN-------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F ++ TL+KHP + + L E R N+ +L Sbjct: 363 LHTHGFNFKSGRYTFQSVVTLLKHPYTRQLTGQAELL------EKELTRNNRFYPLPGEL 416 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-CGN 547 + + + TPL Sbjct: 417 GKD---------------------------------EFLTRLFTPLSGNLNLCIRLSETL 443 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ + + ++ +L+ + E + + + Sbjct: 444 QQVAGIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDE----LTVQSETFRR 499 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ +++ + E + + ++G LE+R L+F L+L +NEG PK+ + F+ Sbjct: 500 LLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYN 559 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T E I A+ F + + + SR++ + L+ Sbjct: 560 LRKAFGMTTIEHKIAVYAYYFYRLLQRAERITLMYNTSSDGLNRGEWSRFMLQFLIEWPH 619 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + GQ + T + F +S S + ++ P Sbjct: 620 PITRQFLEAGQSPQGTSPITVEKTPDVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKF 679 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMK----- 836 Y R + L + D G++FH + K + L++ Sbjct: 680 YYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKL 739 Query: 837 -QIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +D+ F+K + +I + + L+++ + I + Sbjct: 740 QDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDL-RYAPFTFIASEME 798 Query: 887 AKMAIESI---GI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ G+ + G DR+D K G + I DYKTG + L P Sbjct: 799 VDEPIDIQTPKGVIKSRIGGIIDRMD-SKDGTLRIVDYKTGGDADTPPHVESLFIPDKKR 857 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Q L AA + Q + L YI + + E E Sbjct: 858 SNYVFQTFLYAAIMCR---KQPTMKIAPALLYIHRAATETYSPVIQMGEPRKPKEAVEDF 914 Query: 991 -------LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + N E+ F + + ++ L Sbjct: 915 SKYEKEYRERLQGLLEEIFNPEKSFTQTEIIEK--CTYCDFKALC 957 >gi|218130935|ref|ZP_03459739.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697] gi|317476246|ref|ZP_07935497.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii 1_2_48FAA] gi|217987279|gb|EEC53610.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697] gi|316907657|gb|EFV29360.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii 1_2_48FAA] Length = 963 Score = 296 bits (756), Expect = 2e-77, Method: Composition-based stats. Identities = 150/1089 (13%), Positives = 316/1089 (29%), Gaps = 208/1089 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + + L+ I P KRA + + P Sbjct: 4 FLQTVAQDLYSKIGSD-----------LSRTAIVFPNKRASLFFNEYLAAESD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ ++ + L + L ++ + Sbjct: 52 AYVNISELFRQLSPLKSGDPIRL------------VCELYKVFCEETHSEEPLDDFYFWG 99 Query: 137 SLPIS--------PANAIWLAKNLADIIDIIETEE-KKWEDLHALK----------NEKY 177 L IS +A L NL D+ +I++ + E A++ + Sbjct: 100 ELLISDFDDVDKNLVDANRLFCNLQDLKNIMDNYDFLDKEQEEAIQQFFQNFSIDKRTQL 159 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 ++ D L +++ + L EL + ++ L + G Sbjct: 160 KEKFISLWDKLGDIYRHYRKNLSELGIAYEGMMYRHVIEGLDTGL--LRYDRYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 R + + A+ D I + + P Y Sbjct: 218 LNKVETRFFQLLQDAGK-AMFYWDYD-----------------IFYTRLPHEQQPPYVHE 259 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L + +L + + Sbjct: 260 AGEFILRNLKLFPNQLPET--------------------------------AFDALRHPK 287 Query: 358 DVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGIN 412 V I A E +A + +R + +K++A++ + L V + N Sbjct: 288 KVRFISAPTENAQARYLPEWVRTVMKNDAETSKEKENAIVLCNETLLLPVLHSIPPEVEN 347 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465 ++I+ G PL+ T S +++L+ + A+ ++KHP + LS Sbjct: 348 VNITMGFPLAQTPVYSYISALMELQTTGYRRDTGRYTYEAVLAILKHPYTR------QLS 401 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 A + LE + N+ +LK + + Sbjct: 402 AAADDLEHQLTKDNRFYPLPSELKK----------------DAFLERVFTPQNGIASICR 445 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--T 583 ++ + + + + DE+ L+ E K T Sbjct: 446 YLTELLREVAVVYRQEK------------------------DENDIFNQLYRESLFKSYT 481 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L + +IE + ++ RL+ + E + + ++G LE+R L+F Sbjct: 482 LVNRLLNLIE-SDGLTLQTDTLKRLMNRLLTSTNIPFHGEPAIGMQVMGVLETRNLDFRN 540 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702 LI+ LNEG PKN + F+ ++ + T E A+ F ++ + Sbjct: 541 LIMLSLNEGQLPKNGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYN 600 Query: 703 LRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + SR++ + LV D + GQ + T + + + Sbjct: 601 TASDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQHSLAIEIHKTNEVLQRMYNAYD 660 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI- 820 + +S S + ++ Y R + L + D GT+FH + Sbjct: 661 IRQHPNALFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQ 720 Query: 821 ------KKRINKNTPEINH---LMKQIIDSHFEKENLPPHIDI---------IWRHLFHK 862 K+ ++ ++ ++ +D+ F++E + I + Sbjct: 721 DLTTNGKEIRKEDLEQLLRNDVKLQTYVDNAFKEELFHVQANEQPEYNGTQLIHSKVIAS 780 Query: 863 ISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916 L ++ + + + + + + +++ G DR+D K + I Sbjct: 781 YLRQLLRNDL-HYAPFHMEAMEQKVTETVEIETPLGILPLNIGGTIDRMD-SKDDTLRIV 838 Query: 917 DYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 DYKTG P E ++L P Q L AA + ++ +L YI Sbjct: 839 DYKTGGTPRTPENIEQLFVPADNRPNYIFQTFLYAAIMCRKQTLKVAP----SLLYIHRA 894 Query: 967 QKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + ++ + L ++ + N E+ F + Sbjct: 895 ASENYSPVIEMGAPRQPKIPVSNFAFYEDEFRERLSALLKEIYNPEETFSQTEDNGK--C 952 Query: 1020 IQSEYDHLA 1028 ++ L Sbjct: 953 EYCDFRSLC 961 >gi|323345277|ref|ZP_08085500.1| hypothetical protein HMPREF0663_12036 [Prevotella oralis ATCC 33269] gi|323093391|gb|EFZ35969.1| hypothetical protein HMPREF0663_12036 [Prevotella oralis ATCC 33269] Length = 973 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 133/1102 (12%), Positives = 302/1102 (27%), Gaps = 222/1102 (20%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 F + ++ L+ + + P KRA + + + K Sbjct: 3 AFLEYVAEDIIRKYGTN-----------LSKIVVVFPNKRASLFMNEYLVRV-AGKPIWA 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P ++ ++ L + ++ + + + + Sbjct: 51 PTYITISELFRRHSKLMEGDQIKL---ICDLHKTFT-----ACTKIDETLDHFYGWGQLL 102 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA------------LKNEKYGMWWLL 183 L+ + A + + I + L E Sbjct: 103 LADFDDLDKNMADAHQVFANLKNIHEFD-DVSYLTDNQKKALQKFFNNFNEEHNSELKQR 161 Query: 184 AADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 + + L + ++ + + I G Sbjct: 162 FLSLWSNFETIYHDYNLCLERQGLAYEGALYRKVV---LDKDIVFEYDTYIFVGFNMMQK 218 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 A + + Sbjct: 219 AELTICDRLMKEGK---------------------------------------ARFYWDF 239 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D + + + D+ + I + ++ Sbjct: 240 DR-----------YFMPKSPAHNTHEAGHFVSQYLSRYPNELDVTDGAIYDNLNRKQEIT 288 Query: 361 LIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 + A E +A I+ L+ + +K+A++ AD L + V L N++I+ G Sbjct: 289 YLSATTEDAQARYISRWLQDEKRVQAGRKTAIVLADEGLLQTVIHCLPDTVKNVNITTGY 348 Query: 420 PLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 PL+ + SS + +L+ ++ +++HP A F L Sbjct: 349 PLTLSPVSSFINTLIQLQTVGHVSNTDKFRLRNVSAVLRHPYAVFVSE------NCVDLL 402 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + I +L + Sbjct: 403 KNLQENRRYYPSIRELATD----------------------------------------D 422 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSK 590 L + + G+ ++ + L+ + + L+ E + TL + + Sbjct: 423 NLAFLFKDISRLDGDRNL-QLANWMIELLRRIGIRAKEDYDPLFKESLFRMYTLLNRLAG 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +IE + + + + +I++LI ++ E + L I+G LE+R L+FD +++ N Sbjct: 482 LIEN-GDLTVDGVTFQRLISQLIQSTSIPFHGEPAIGLQIMGVLETRNLDFDHILVLSCN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP 709 EG PK F+ ++ L T + + A+ F + + + + Sbjct: 541 EGNMPKGVNDASFIPYSIRKAFGLTTIDNKVAIYAYYFYSLLQRSSDITLAYNTAAEDGK 600 Query: 710 T-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 T SR++ +L++ + + + GQ + R ++ + Sbjct: 601 TGEMSRFMLQLMIESEFNIKYVMLRAGQKVVMPHR--------TPIEKTDEIITILNSFT 652 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKN 827 S + I + + Y +L + + D G +FH +K Sbjct: 653 KISPTAINRYLRCQLQFYYNMVLGIKEPDEDEGGEIDNRIFGNIFHRSAELAYLHFASKE 712 Query: 828 T------------------PEINHLM------KQIIDSHFEKENL----------PPHID 853 +++ L+ +I+D F +E + Sbjct: 713 EIEEADGKLKLIRSLQIRKEDLDALLNNKAVIAEIVDRAFAEELFKLKEKHASIEYNGLQ 772 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID- 906 II R + LE + + + +G + + G+ DR+D Sbjct: 773 IINREVIIGYLRQLLEIDR-RLVPFTIKALEQDVYATIEFPVLGESRVLKIGGYIDRLDE 831 Query: 907 --LLKSGFV-DITDYKTGDNPKK-----ETAQ-------KLID--PQLSLEAAALKAGSF 949 ++G + DYKTG+ P K E + D Q + ++ Sbjct: 832 VKRDETGRYIRVIDYKTGNTPSKTTNTIEDVFSTDDISLRHTDYFLQSIFYSIIVRHSEQ 891 Query: 950 SQIDCRKVA-NLFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 V+ L +I+ + + + +K +E E+ + L ++ + + + Sbjct: 892 WNDRRLPVSPALLFIQHSMGENYDPVLKLGKEKINDVEEYYEEFKERLKNVLREIFDPKT 951 Query: 1007 PFISHLRLSEKSNIQSEYDHLA 1028 F K Y+ L Sbjct: 952 DF--SPTPDTKRCNACPYNRLC 971 >gi|329960509|ref|ZP_08298897.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT 12057] gi|328532739|gb|EGF59526.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT 12057] Length = 970 Score = 293 bits (750), Expect = 1e-76, Method: Composition-based stats. Identities = 150/1094 (13%), Positives = 303/1094 (27%), Gaps = 211/1094 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + T + L+ I P KRA + + P Sbjct: 4 FLQLVAHDLYSKTGND-----------LSRTAIVFPNKRASLFFNEYLAAESD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD----IIKDLYP 132 S+ ++ + L + L ++R + + Sbjct: 52 AYVSISELFRQLSPLKPGDPIRL------------VCELYKVFREETHSEETLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183 E +S + A L + ++ ++ L + E ++ Sbjct: 100 ELLISDFDDVDKNLVDADKLFTNLQDLKNIMDDYDFLDKEQEEAIRQFFQNFSIEKRTEL 159 Query: 184 ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 D L +++ + L L + +M A K I G Sbjct: 160 KNKFISLWDKLGDIYRHYRKNLTGLGIAYEGMMYRNVMEQLAT--DKLHYERYIFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D + P Y+ Sbjct: 218 LNKVETEFFLRLQNAGK-ALFYWDYDVFY-----------------TRLPREQKPPYTHE 259 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L +L ++ + Sbjct: 260 AGEFILRNLELFPNQLPET--------------------------------AFDVLRKPK 287 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKS-----------ALITADRNLARRVKLEL 406 V I A E +A + ++ ++NK + A++ + L V + Sbjct: 288 QVRFISAPTENAQARYLPEWIKEMKEKNKNSTGKDGKWKEKENAVVLCNEALLLPVLHSI 347 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGF 459 N++I+ G PL+ T S + SL+ + A+ ++KHP Sbjct: 348 PSEVKNVNITMGFPLAQTPVYSFINSLVELQTTGYRNDTGRYTYEAVLAILKHPYTCQLS 407 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 LE + N+ +L+ + Sbjct: 408 SS------AEGLEKQLTKDNRFYPLPSELRQ----------------DAFLEQVFTPQNG 445 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 L ++ + + + D L+ E Sbjct: 446 THALCRYLTDLLREVAVIYRQEK------------------------DAEDIFNQLYRES 481 Query: 580 EGK--TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 K TL + +IETG ++ RL+ + E + + ++G LE+R Sbjct: 482 LFKSYTLINRLVNLIETGELSSLRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETR 541 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRH 696 L+F LI+ LNEG PK ++ F+ ++ + T E A+ F + Sbjct: 542 NLDFRNLIMLSLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAEN 601 Query: 697 LIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + + + SR++ + LV D + GQ + T + + Sbjct: 602 ITLLYNTASDGLNRGEMSRFMLQFLVESPHDISYEYLEAGQSPQQTRDIIIDKTPEILER 661 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + + +S S + ++ Y R + L + D GT+FH Sbjct: 662 MHRIYNIHRHPRALFSPSALNAYLDCRLKFYYRYVAGLKAPEEVSAEIDSALFGTIFHYS 721 Query: 816 ITELIKKRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIW 856 + K N ++ ++ D+ F+++ +I Sbjct: 722 AELVYKDLTAHNKEIRKEDLEALLKNDVKLQAYVDNAFKEKFFHVSQTEQPEYNGTQLIH 781 Query: 857 RHLFHKISHSFLEHEEKIQSS-IEKIFVNI----PAKMAIESIGIHLTGFADRIDLLKSG 911 + L+++ + +E + + + + + + + G DR+D Sbjct: 782 AKVIASYLRQLLKNDLQYAPFCMEAMEKEVDEVMEVETSAGKLSLKIGGTIDRMDSKGD- 840 Query: 912 FVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLF 961 + I DYKTG PK E ++L P Q L A+ L ++ +L Sbjct: 841 TLRIVDYKTGGTPKIPENIEQLFTPANNRPNYIFQTFLYASILCRRQPLKVAP----SLL 896 Query: 962 YIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRL 1014 YI I E+ + L +++ + + + PF Sbjct: 897 YIHRAASESYSPIIEMGASRQPKVPVNNFAFHEEEFRERLQKLLQEIFSPDTPFD--QTE 954 Query: 1015 SEKSNIQSEYDHLA 1028 K ++ L Sbjct: 955 DTKLCEYCDFRSLC 968 >gi|224539621|ref|ZP_03680160.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus DSM 14838] gi|224518772|gb|EEF87877.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus DSM 14838] Length = 965 Score = 293 bits (749), Expect = 1e-76, Method: Composition-based stats. Identities = 143/1092 (13%), Positives = 301/1092 (27%), Gaps = 208/1092 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ V I P KRA + + P Sbjct: 4 FLQLVAQDLYKKIGND-----------LSRVAIVFPNKRASLFFNEHLAAQSD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD----IIKDLYP 132 S+ ++ + L L + L ++R + + Sbjct: 52 AYVSISELFRQLSPWKLGDPIRL------------VCELYKVFREETHSEETLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183 E +S + A L + ++ ++ L + + E ++ Sbjct: 100 ELLISDFDDVDKNLVDADRLFSNLQDLKNIMDDYDFLDSEQEEAIRQFFQNFSIERRTQL 159 Query: 184 ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 D L + + L EL + +M K + G Sbjct: 160 KEKFISLWDKLGDIYHGYRDNLAELGIAYEGMMYRYVMEEL--QPEKLKYDRYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 R + + A+ D + P Y+ Sbjct: 218 LNKVETRFFERLRDA-GRALFYWDYDLFY-----------------TRLPREKTPPYTHE 259 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L + L ++ + Sbjct: 260 AGEFILRNLKIFPNELPGT--------------------------------AFDVLRHPK 287 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITADRNLARRVKLELTRFG 410 +V I A E +A + + + + + A++ + +L V + Sbjct: 288 NVRFISAPTENAQARYLPEWVHAVMKNDPSGTPTQEKENAVVLCNESLLLPVLHSIPSEV 347 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKY 463 N++I+ G PL+ T S +++L+ + A+ ++KHP + P Sbjct: 348 KNVNITMGFPLAQTPVYSFISALIELQTNGYRRDTGRYSYEAVQAVLKHPYTRQLSPSAE 407 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 LE + N+ +LK + L Sbjct: 408 ------KLEKQLTKDNRFYPLPSELKQ----------------DEFLEQVFTPQTGISAL 445 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 ++ + + + T L+ E K+ Sbjct: 446 CQYLTDTLREVSILYRQEQET------------------------DDIFNQLYRESLFKS 481 Query: 584 LSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + + ++ RL+ + E + + ++G LE+R L+F Sbjct: 482 YTLINRLLSLIDSGELNLQTDTLKRLLCRLLATSNIPFHGEPAIGMQVMGVLETRNLDFR 541 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR 701 LI+ LNEG PK ++ F+ ++ + T E A+ F ++ Sbjct: 542 NLIMLSLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLY 601 Query: 702 SLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + + SR++ + LV D + GQ T + + + + Sbjct: 602 NTSSDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQSGREIRIEKTPEIIARMYEKY 661 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + +S S + ++ Y R + L + D GT+FH Sbjct: 662 SLVRHPKALFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELAY 721 Query: 821 KKRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFH 861 K ++Q++ D+ F++E +I + Sbjct: 722 KDLTANGKEIRKEDLEQLLRNDVKLQNYVDTAFKEEFFHVLPTERPEYNGTQLINAKVIA 781 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA----KMAIESIGIHLT--GFADRIDLLKSGFVDI 915 L ++ + + + P ++ + L G DR+D + I Sbjct: 782 SYLRQLLRNDLQ-YAPFTMEGMEEPVNEIMEIETPQGKLALNIGGTIDRMDSKGD-TLRI 839 Query: 916 TDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 DYKTG +P E ++L P Q L A+ + ++ +L YI Sbjct: 840 VDYKTGGSPKTPENIEQLFTPADGRPNYIFQTFLYASIMCRKQSLKVAP----SLLYIHR 895 Query: 966 KQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 + + ++ + L ++ + N E+PF ++ Sbjct: 896 AASETYSPVIEMGEARQPKIPVNNFAFYEDEFRERLQNLLQEIYNPEEPFT--QTEDKRK 953 Query: 1019 NIQSEYDHLARV 1030 ++ L R Sbjct: 954 CEFCDFRDLCRR 965 >gi|23009340|ref|ZP_00050425.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum magnetotacticum MS-1] Length = 643 Score = 292 bits (747), Expect = 2e-76, Method: Composition-based stats. Identities = 173/626 (27%), Positives = 270/626 (43%), Gaps = 16/626 (2%) Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401 ++ ++ + +A++EA +EREEA+ A+ALR +L+ + +AL+T DR LA R Sbjct: 5 RLDAGERLALAREGMAGLAVVEAADEREEALIAALALRETLETPRATAALVTPDRGLALR 64 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 V EL R+GI + SAG+ L+ + + + + L+ HP + G Sbjct: 65 VSAELARWGIAAEDSAGLSLARSQAGRFARLVAELAAE-VAPARVIALLAHPFVRLGLTR 123 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + RA ALE+ LRG ++ + + VP + RL D +LA Sbjct: 124 SEVVRAAAALEIGGLRGPAPIPK-NSFGGMLAAVGLQRASTERVPRAKKRLKPIDWDLAE 182 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 ++ + + P ++ L + + ++ + + Sbjct: 183 TILRRLKDALGPF-----QAEDLPVTGNLVALAALHREACERMMDGPEDEIDDPSLDSLD 237 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLN 640 L + E ++ + T L TV L ILG LE+RLL+ Sbjct: 238 GLFDDLEAAAREELPGRFSD---YAAFFTALARDRTVACAQRNAHPRLRILGPLEARLLS 294 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 D ++LGGL+E VWP + FL+R M+ + L E+ IGQAAHDF A GT + T Sbjct: 295 VDRIVLGGLDEAVWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAHDFVQALGTHDAVVT 354 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--YKRPK 758 R+ + PT+ SR+LQRL GG + RGQ LD + P KRP Sbjct: 355 RAAKREGSPTVPSRFLQRLRAFGGDAVWSEAVGRGQRLRRLAAALDRGREAPPPRLKRPA 414 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P P P S +EI+ L+ DPY+++A+ IL L+ + P +RG+L H I+ + Sbjct: 415 PKPDPALFPERLSVTEIETLVRDPYSIFAKHILGLEALEPLAVVPGAAERGSLIHKILGD 474 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + L+ I F + P + W + +++ +FLE E + S Sbjct: 475 FSQAHPGALPAAAETLLYAIALDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRRS 534 Query: 878 IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 I I K+ I L+ ADRI+ G I D+KTG P T P Sbjct: 535 IRAIHAERSGKLTIPLGERTFTLSARADRIEQRADGGFCIVDFKTGTPPSNRTVFAGFSP 594 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLF 961 QL+LEAA L G+F + R L Sbjct: 595 QLTLEAAMLMRGAFEGLKARTAPILL 620 >gi|224023771|ref|ZP_03642137.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM 18228] gi|224016993|gb|EEF75005.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM 18228] Length = 971 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 140/1066 (13%), Positives = 314/1066 (29%), Gaps = 168/1066 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +++ L T + A + + P KRA + + P Sbjct: 18 FLKQVAHDLYTKTNGD-----------FAHLAVVFPNKRASLFFNEYLAQEAD-RPIWSP 65 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + + + L V ++ R+ +K + E + Sbjct: 66 AYVSISELFRQSSSLQVGDPIKL---VCDLYRVFR-----EATGSKETLDDFYFWGEMLI 117 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYW 195 S + L + DL+AL ++ + + S+++ Sbjct: 118 SDFDDADKNLADTDALFSNL----------RDLNALADDYDFLEEGQK-----EAISQFF 162 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 ++ + + + + + +++ G Sbjct: 163 HNF--SIHQVTELKQRFISLWNVLREVYT----------------RYRQVLREQGIAYEG 204 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + +D + ++ +L L+ + + Sbjct: 205 MLYREVIDR---------LDVRTLPYQRYVFVGFNVLNKVEQELFHRLNEAGKALFYWDY 255 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + + L + ++ IE+ E +A + Sbjct: 256 DNFYLEKTPHEAGEFIRRNL---RNFPSELPASAFSNLNRPKEITYIESPTENGQARYLP 312 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +R +L E++K++A++ + ++ + V L +++I+ G PLS T S + +L+ Sbjct: 313 QWIRTNLTEDEKETAVVLCNESMLQPVLHSLPENVSHLNITMGFPLSQTPAYSFVNALME 372 Query: 436 AIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 F + ++++HP + PE LE + N+ +L Sbjct: 373 LHTAGYNPNNGRYRFDEVISVLRHPYTRQLSPE------AGKLEKALTQDNRFYPLPSEL 426 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 E E LL + + + Sbjct: 427 --------------------------EKDEALELLFQ-------------PREGNLSLCI 447 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKANAIEWID 607 +++ K C Q L+ E + ++ + Sbjct: 448 MLAEALKRMAACYQQQAASADAAFDQLYREALFNAFTLINRFHTLTESGELQVQPATFKR 507 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++TR++ ++ E + + ++G LE+R L+F LI+ +NEG PK+ + F+ Sbjct: 508 LLTRVMSAASIPFHGEPAIGMQVMGVLETRNLDFRHLIMLSVNEGQLPKSGGEASFIPYN 567 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T + I A+ F + + + SR++ + L+ Sbjct: 568 LRKAFGMTTIDHKIAVYAYYFYRLLQRAEKVTLVYNTSTDGINRGEMSRFMLQFLIEWEY 627 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + Q T + F S S + ++ P Sbjct: 628 PVRRMVLEAAQSPQTTAPITIEKTPDVMRRMQSVFDVRVNPKAFLSPSALNCYLDCPLKF 687 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF-- 843 Y + + +L + D + G++FH+ + K ++ ++ Sbjct: 688 YYKYVAQLSAPDEVSAEVDASHFGSIFHDAAEHIYKDLTAHGKVINKEAIETLLKDEVRL 747 Query: 844 -----------------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E+ I +I + + LE++ + Sbjct: 748 QEYVDNGFKKLFFNIPKEERAEYNGIQLINSAVITRYLKQLLENDL-RYAPFTFSGSEHF 806 Query: 887 AKMAIE---SIGI---HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I+ GI + G DR+D K G + I DYKTG + L P Sbjct: 807 VSEDIDIRTPRGILKSRIGGIIDRLD-TKDGTLRIVDYKTGGDADTPANVESLFLPDKKR 865 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 Q L A+ + + +VA +L YI + + E E Sbjct: 866 SAYVFQTFLYASIVCRKLREKGSDLRVAPSLLYIHRAASQDYSPVIRMGEPRKEKEAVED 925 Query: 990 -------SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +NL +++ ++ N E F + +E ++ L Sbjct: 926 FSQYENLFRENLNQLLEVIFNPEIAF--NQTDNEDKCSFCDFRGLC 969 >gi|118590598|ref|ZP_01548000.1| hypothetical protein SIAM614_03446 [Stappia aggregata IAM 12614] gi|118437061|gb|EAV43700.1| hypothetical protein SIAM614_03446 [Stappia aggregata IAM 12614] Length = 590 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 190/595 (31%), Positives = 303/595 (50%), Gaps = 18/595 (3%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 + ++++ PS PF + ++ L++GTL+ FR +PLLL SVT+Y+PT+RA + L Sbjct: 3 RSARLWSVPPSVPFLKTLVDTLVDGTLIPGFRP-LDDPLLLPSVTLYLPTRRAARLLPEL 61 Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN-LNPPVSNIQRLLELARLILIWRNK 122 F + G + +LP I+ +GD E+ + L P + ++R L + RL+ W+ Sbjct: 62 FQQRFGGRPVLLPAIRPVGDADEDAQSLTASADLEPLPPAMPLLERHLAMTRLVKAWKGM 121 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L L + PL LP S A+A WLA +L ++D +ETEE W +L L E + +W Sbjct: 122 LRREALSLRSDEPLGLPASTADAAWLAADLLTLMDEVETEEADWSELSGLVPEDHARYWQ 181 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPA 241 + DFL+I + W L EL P + AL+R EAE L + +GP+I+AG TGS+PA Sbjct: 182 ITLDFLQIVREAWPAHLAELKMMDPKARRSALIRREAERLERTPPRGPVIVAGVTGSVPA 241 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-------SSNTTYSTHPQY 294 TA L+ V+ G +VLPGLD H+ W + +++ + T +HPQY Sbjct: 242 TAELLKVVSRLEAGVVVLPGLDRHLDNRSWAVLGQRTGKASMRKGVAPKDAATLPSHPQY 301 Query: 295 SLAKLLDFLDIKREDVKRL-GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 SL +LLD L RE+V L + R ++S++ P DTSD + + Sbjct: 302 SLKQLLDRLGAAREEVATLGPEPDQGLLLREELVSEALRPADTSDGWTAYLDTRSETDRA 361 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 + V+++ A NE +EA+S+AIALR +++ + +ALI+ DR L RRV EL R+ I + Sbjct: 362 RALDGVSIMTARNEADEALSVAIALREAIERQ-ESAALISPDRMLTRRVAAELARWNIQV 420 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D SAG PL T + + D + + L+KHPL + G P K + A ALE Sbjct: 421 DDSAGRPLDQTAPAILAILAAKLALGGCDPIDLLALLKHPLTRLGLPVKDIRSAARALER 480 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 +RG + L+ L +D + + H P W+ ED ++ LVD + + P Sbjct: 481 GVVRGPRARPGTAGLR-LAVDASREEVSKAHTPRWKKIHD-EDWDVIANLVDRLANALKP 538 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 L + G + ++D + V ++ + +D + L+ E G+ L+ Sbjct: 539 LEELAGD----GGTILLTDLARRHVEVIEAISIDHEGSVAELYAGEAGEALAQFL 589 >gi|189463366|ref|ZP_03012151.1| hypothetical protein BACCOP_04083 [Bacteroides coprocola DSM 17136] gi|189429795|gb|EDU98779.1| hypothetical protein BACCOP_04083 [Bacteroides coprocola DSM 17136] Length = 972 Score = 290 bits (742), Expect = 9e-76, Method: Composition-based stats. Identities = 156/1066 (14%), Positives = 305/1066 (28%), Gaps = 168/1066 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +++ L N T V I P KRA + + + P Sbjct: 19 FLKQVAHDLYNKTEGN-----------FTKVAIVFPNKRASLFFNEYLAQESD-RPIWSP 66 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + + L V ++ ++ + +K + E + Sbjct: 67 TYVSISELFRQSSDLSIADPIKL---VCDLYKVFQ-----KATGSKETLDDFYFWGEMLI 118 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + + L + + + N + + S+++ Sbjct: 119 ADFDDADKNMADTHALFSNLKDLNEL---------MDNYDFLEEGQK-----EALSQFFH 164 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 +N + + + M + K + + SI L V Sbjct: 165 NF--SINQVTELKQRFISMWNVLGDIYTEYKALLE----SQSIAYEGMLYRQVIEQ---- 214 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + ++ L L+ + + Sbjct: 215 -----------------LDVEALPYNKYIFVGFNVLNKVEHTLFKKLNEAGKAMFYWDYD 257 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + + L + +V IE+ E + + Sbjct: 258 TFYLNKTPHEAGEFIRRNL---RDFPSELPASFFDNLNQPKEVTFIESPTENGQVRYLPQ 314 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 +R +L +K++A++ + L + V L +I+I+ G PLS T S + +L+ Sbjct: 315 WIRENLTSQEKETAVVLCNEALLQPVLHALPDNVKHINITMGFPLSQTPAYSFVNALMEL 374 Query: 437 IFKLNDF-------MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + + +++KHP + PE LE R N+ +LK Sbjct: 375 HTSGYNPNNGRYLFAEVISVLKHPYTRQLSPE------AEKLEQNLTRDNRFYPLPSELK 428 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + L T + N C Sbjct: 429 Q-------------------------------------DNVLELLFTPRRNNLDLCSM-- 449 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT--LSSLFSKIIETGSCIKANAIEWID 607 +S+ K Q L+ E KT L + F +IE + A + Sbjct: 450 LSEALKEVAVIYQQQAASHSDAFDQLYRESLFKTYTLVNRFHTLIE-SKELNVQAGTFQR 508 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++TR++ ++ E + + ++G LE+R L+F LI+ +NEG PK + F+ Sbjct: 509 LLTRVMSSSSIPFHGEPAIGMQVMGVLETRNLDFRHLIMLSVNEGQLPKAGGDSSFIPYN 568 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + T + I A+ F + + + SR++ + L+ G Sbjct: 569 LRKAFGMTTIDHKIAVYAYYFYRLMQRAEKVTLVYNTATDGINRGELSRFMLQFLIEWGY 628 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + Q D T + T + F S S + ++ P Sbjct: 629 PVLRKQLEAAQSPQDSTPIIIEKTPDVMERMKSVFDIRNNPKALISPSALNCYLDCPLKF 688 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE- 844 Y + + L D D G++FH + K ++ ++ Sbjct: 689 YYKYVALLSAPDEVTADIDSAKFGSIFHYAAEHIYKALTAHGKLISKENLETLLKDEVRL 748 Query: 845 ------------------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ I +I + K L ++ + + Sbjct: 749 QTYVDNGFKELFFNLPPNEQPEYNGIQLINSAVIVKYIQQLLRNDL-RYAPFTFVGSEQR 807 Query: 887 -AK-MAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 + + I I + G DRID K + I DYKTG Q L P Sbjct: 808 IFENIEICTSTGDIQSRIGGIIDRID-SKGESLRIVDYKTGGDADTPANVQSLFIPDKKR 866 Query: 936 -----QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSE- 988 Q L A+ + + D R VA L YI + + E E Sbjct: 867 SNYVFQTFLYASIVCKKLREKNDSRLVAPALLYIHRAASENYSPVIQMGEPRKPKEPVEN 926 Query: 989 ------KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +NL ++ + N + F E ++ L Sbjct: 927 FAQYEGDFRENLKTLLEDIFNPDISFT--QTEIEDKCAYCDFRALC 970 >gi|157803845|ref|YP_001492394.1| hypothetical protein A1E_03370 [Rickettsia canadensis str. McKiel] gi|157785108|gb|ABV73609.1| hypothetical protein A1E_03370 [Rickettsia canadensis str. McKiel] Length = 928 Score = 288 bits (737), Expect = 3e-75, Method: Composition-based stats. Identities = 172/1035 (16%), Positives = 338/1035 (32%), Gaps = 145/1035 (14%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 A + F +++ V I +P + EL+ I+ K Sbjct: 2 AANYSFLESFAKYIIDKLGKGK------------EVQIILPNNFSCLELKKILIDKYKIK 49 Query: 72 STILPIIKS-LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 LP+I + + ++ AD +S I+ L L+ +I ++ +I + L Sbjct: 50 ---LPVIIPFISIISKKNLDADY---------ISKIEELFILSEIITEYKELTFNIEESL 97 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 AK L + + + + ++ +W FL+ Sbjct: 98 KA----------------AKILRKLFNDLILNNID---IKLIEVYNNSSYWQKIYKFLEY 138 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 W E + + S + + SI + V Sbjct: 139 CFLRWQEEISPIMNSDSFCDRCKERSLYTNRRDDEQRSTKW-----RSIQYNQKQTKAVY 193 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + + I I + + + + L D Sbjct: 194 KLKLLHEEIIKIKNGHKQIILAGIFKPDPFLKKFKEELKDYIIHYNPSL------SARDF 247 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + E + + ++ + N + ++++ +E + EE Sbjct: 248 LHNVDDKQEFVEDTERRTAAYTNVHEDSSTGSTHKLPLDKNYARSLNNISYLEPHDIYEE 307 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A IA K+ A+IT + L R L ++ + G L T +L Sbjct: 308 AKQIAYI---CSRNKDKRIAIITDNNKLKRVYCNFLDKYEDLL----GHDLRLTNIGELL 360 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 TS++ + D + L+K+PL LEL+ N+ L Sbjct: 361 TSIIKILCNNFDLKTLFLLLKNPLINCPM--------VQKLELMLSNKNRFISSPKYLLQ 412 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L +E+ +E L+D + T +I Sbjct: 413 L------------------QFDNEDIREYCRNLIDILF---------------TNTPYNI 439 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDII 609 D + + P +W +E G L + + + ++ I Sbjct: 440 QDILVAAKEIAEKIL-------PTIWGKEGGTELLEFLTNLTAYCKYINPTDKKDFPKIF 492 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-SRVM 668 + L+ K +++ + I + L FD +IL N W N +P+L ++ Sbjct: 493 SFLLSNIRYY-KNTEAANIIIGSPTDLVLCEFDLIILPHFNNENWSPNKQVHPWLLNKKA 551 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 LN+ E + F + + +I + + + T S +L Sbjct: 552 LQILNIDYDEIDSNLYSDYFNLFLQNKQVIILNAKKYDKKLTTTSNLFLKLQ-------- 603 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + ++ +D K + P T S ++I+ LI +PY YA+ Sbjct: 604 KDCVSSHDSIAGFSNYMDTVFK--PQYNNESTALNTFFPTTLSVTDIETLIRNPYGFYAK 661 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRINKNTPEINHLMKQIIDSHFE 844 +IL L + ++P +D G HN++ E K + +N N + + + I + Sbjct: 662 KILGLRKKDNIWEEPKISDFGNFIHNVLEEYSKNYDKQYMNLNLLDKQNALINIGNHILY 721 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFA 902 LP + W+ S +F+ + + + + ++I+ I ++ I I + G A Sbjct: 722 STILPIYTKKAWQIKLVAFSKAFILFDIERRKNCKEIYFEIKGELRLNIAGQDIKIIGIA 781 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN--- 959 DRI++ KS + I DYKTG P K+ + + PQL +E+ L F++ K N Sbjct: 782 DRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESLMLLENGFTEFYSCKSGNPVI 841 Query: 960 -----LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 + Y+++ D + + + LI+++ + F L L Sbjct: 842 NKEITIAYVKITS---TDPYIQTTEIALNIKTLNRHKAGLIKLLEHYITNKF-FSYDLNL 897 Query: 1015 SEKSNIQSEYDHLAR 1029 S+ ++Y HL+R Sbjct: 898 SK----YNDYLHLSR 908 >gi|329955054|ref|ZP_08296035.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT 12056] gi|328526344|gb|EGF53359.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT 12056] Length = 963 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 143/1089 (13%), Positives = 302/1089 (27%), Gaps = 208/1089 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYSKIGND-----------LSRTAIVFPNKRAGLFFNEHLAAQSD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDLYP 132 ++ ++ + L + L ++R + P + Sbjct: 52 AYVNISELFRQLSPLKSGDPIRL------------VCELYKVFREETHSEEPLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------- 183 E +S + A L + ++ ++ L + E ++ Sbjct: 100 ELLISDFDDVDKNLVDAGKLFSNLQDLKNIMDSYDFLDKEQEEAIQQFFQNFSIDKRTQL 159 Query: 184 ------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 D L + + + L EL + ++ + + G Sbjct: 160 KEKFISLWDRLGDIYRNYRKNLSELGIAYEGMMYRHVIEQLDT--DRLRYDRYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 R + + A+ D + + P Y Sbjct: 218 LNKVETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPHEQQPPYIHE 259 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L + +L ++ + Sbjct: 260 AGEFILRNLKLFPNQLPET--------------------------------AFDVLRHPK 287 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGIN 412 V I A E +A + +R + + + S A++ + +L V + N Sbjct: 288 IVRFISAPTENAQARYLPEWVRTVMKNHTETSKEKENAIVLCNESLLLPVLHSIPPEVEN 347 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465 ++I+ G PL+ T S + +L+ + + ++KHP + LS Sbjct: 348 VNITMGFPLAQTPVYSYINALMELQTTGYRRDTGRYTYETVLAVLKHPYTR------QLS 401 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 A LE + N+ +LK + + Sbjct: 402 AASEDLEKQLTKDNRFYPLPSELKK----------------DAFLERIFTPQNGISSICR 445 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--T 583 ++ + + + + DE L+ E K T Sbjct: 446 YLTELLREVAVVYRQEK------------------------DEEDIFNQLYRESLFKSYT 481 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L + +IE + ++ RL+ + E + + ++G LE+R L+F Sbjct: 482 LVNRLLSLIE-SDGLSLQTDTLKRLMNRLLTSTNIPFHGEPAIGMQVMGVLETRNLDFRN 540 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702 LI+ LNEG PK + F+ ++ + T E A+ F ++ Sbjct: 541 LIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNSVYAYYFYRLIQRAENITLLYD 600 Query: 703 LRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + SR++ + LV D + GQ + T + + + Sbjct: 601 TASDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQHSREIEIHKTDEVLSRMYNTYD 660 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 +S S + ++ Y R + L + D GT+FH + + Sbjct: 661 IRRHPNALFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQ 720 Query: 822 KRINKNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFHK 862 ++Q++ D+ F++E ++ + Sbjct: 721 DLTANGKEIRKEDLEQLLRNDVKLQTYVDTAFKEELFHVPADERPEYNGTQLVHSKVIAS 780 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDIT 916 L ++ + + + + ++ +++ G DR+D K+ + I Sbjct: 781 YLRQLLRNDLQ-YAPFHMEAMEQKVTETIEVNTPLGTLPLNIGGTIDRMD-SKNDTLRIV 838 Query: 917 DYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 DYKTG P E ++L P Q L AA + ++ +L YI Sbjct: 839 DYKTGGTPKTPENIEQLFTPADNRPSYIFQTFLYAAIMCRKQTLKVAP----SLLYIHRA 894 Query: 967 QKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + + + L ++ + N +PF K Sbjct: 895 ASESYSPVIEMGAPRQPKVPVYNFAFYEDDFRERLSALLQEIYNSGEPFT--QTKDTKKC 952 Query: 1020 IQSEYDHLA 1028 ++ L Sbjct: 953 EYCDFKRLC 961 >gi|270297068|ref|ZP_06203267.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273055|gb|EFA18918.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 963 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 144/1082 (13%), Positives = 307/1082 (28%), Gaps = 194/1082 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA T + P Sbjct: 4 FLQLVARDLYAKIGND-----------LSRTAIVFPNKRASLFFNEYLATETD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + L V + ++ R++ + E + Sbjct: 52 AYVSISELFRQLSPLKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL---------LAADF 187 S + A L + ++ ++ L + E ++ L A F Sbjct: 104 SDFDDVDKNLVDADKLFSNLQELKNIMDNYDFLDQEQEEAIRQFFQNFSIEKRTELKAKF 163 Query: 188 ------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 L +++ L EL + +M + + G Sbjct: 164 ISLWDKLGDIYRHYRRNLTELGIAYEGMMYRNVMEQLDT--DRLRYDRYVFVGFNVLNRV 221 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 R + + A+ D + P Y+ Sbjct: 222 ETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPLEQKPPYTHEAGEF 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + +L S ++ + +V Sbjct: 264 ILRNLKLFPNQLPETS--------------------------------FDVLRKPKNVRF 291 Query: 362 IEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGINIDISA 417 I A E +A + +R + + K +A++ + +L V + N++I+ Sbjct: 292 ISASTENAQARYLPQWIRGNEELRTPSSFKDTAVVLCNESLLLPVLHSIPAEVKNVNITM 351 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + +L+ + + TL+KHP + P Sbjct: 352 GFPLAQTPVYSFINALVELQTTGYHAGTGRYIYETVITLLKHPYTRQLSPNAETL----- 406 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E R N+ +LK + L ++ + Sbjct: 407 -EKQLTRDNRFYPLPSELKQ----------------DAFLEQVFTPQNGIAALCSYLTEL 449 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + TL + Sbjct: 450 LREVAVLYRQEKDVEDIF----------------------NQLYRESLFKSYTLVNRLLS 487 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +IETG ++ RL+ + E + + ++G LE+R L+F LI+ LN Sbjct: 488 LIETGELSGVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSLN 547 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK + F+ ++ + T E A+ F ++ ++ + Sbjct: 548 EGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNISSDGLN 607 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 SR++ + LV + + GQ + T + + + Sbjct: 608 RGEMSRFMLQFLVESPHNISLEYLEAGQSPQQALEIEIHKTPEMLQQMFDAYDIHRRPKA 667 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------K 821 +S S + ++ Y R + L + + D GT+FH + + Sbjct: 668 FFSPSALNAYLDCRLKFYYRYVAGLKALDEVSAEIDSALFGTIFHRSAELVYNELTTNGR 727 Query: 822 KRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLE 869 + ++ ++ ++ +D+ F+++ +I + L Sbjct: 728 EIRKEDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR 787 Query: 870 HEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 ++ + + + + M I++ + + + G DR+D + I DYKTG Sbjct: 788 NDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-TLRIVDYKTGGT 845 Query: 924 P-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 P E ++L P Q L AA L ++ +L YI Sbjct: 846 PKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLYIHRAASESYSP 901 Query: 974 ITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + + ++ + L ++ + + E+ F + ++ Sbjct: 902 VIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTEDTRKCEYCDFRS 959 Query: 1027 LA 1028 L Sbjct: 960 LC 961 >gi|325298045|ref|YP_004257962.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM 18170] gi|324317598|gb|ADY35489.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM 18170] Length = 957 Score = 288 bits (736), Expect = 4e-75, Method: Composition-based stats. Identities = 143/1066 (13%), Positives = 309/1066 (28%), Gaps = 163/1066 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +E+ L T + + V + P KRA I + P Sbjct: 4 FLQEVAHDLYQKTEGD-----------FSHVAVVFPNKRASLFFNECLIRESEH-PLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + + L + L ++R Sbjct: 52 AYISISELFRQSSSWQTGDPVKL------------VCDLYKVFRQVTGSSEP-------- 91 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 N + + L D + + L + L + + Sbjct: 92 -----LDNFYFWGEMLIADFDDADKNLADTDALFS------------NLKELNALTDNYD 134 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + ++ M + E + I L+ + G Sbjct: 135 FLEEGQKEALAQFFRNFSMDSVTELKQRFIS---IWDTLGDIYTRYKALLESQGIAYEGM 191 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + + T+ + L L+ + + Sbjct: 192 ---------MYRRVIETLDVSQLPYKTYVFVGFNVLNKVEHTLFQKLNDAGKALFYWDYD 242 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + + + ++ E+ E + + Sbjct: 243 MFYLKRTPHEAGEFIRRNLHDFPSELPAARFE---NLEQPKEITFAESPTENGQTRFLPQ 299 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 LR +L + +K++A++ + +L + V L +I+I+ G PLS T S +LL Sbjct: 300 WLRKNLTQEEKETAIVLCNESLLQPVLHSLPENVKHINITMGFPLSQTPAYSFANALLEL 359 Query: 437 IFKLNDFM-------AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 D +L+KH + + E + N+ +L Sbjct: 360 HTSGYDSRNGRYHFKETVSLLKHAYTRLLSSNAEML------EKELTKNNRFYPLPSEL- 412 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 +K+ ++ + E L + + + + + + + T + Sbjct: 413 ---------EKDEALELLFKPCHTNE------ALCNTLSKALQQIA-MRYQEQKTDEKDA 456 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + + TL++ F ++E + + ++ Sbjct: 457 FDQLYR--------------------EALFKAFTLTNRFHTLLE-SKELDVKPDTFQRLL 495 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 TR++ ++ E + L ++G LE+R L+F LI+ +NEG PK + F+ ++ Sbjct: 496 TRVMASSSIPFHGEPAIGLQVMGVLETRNLDFRHLIMLSVNEGQLPKTGSDASFIPYNLR 555 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 + T + I A+ F + + + SR++ + L+ G Sbjct: 556 KAFGMTTIDHKIAVYAYYFYRLLQRTEKATLVFNTATDGINRGEMSRFMLQYLIEWGYPI 615 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + Q + + + F S S + ++ P Y Sbjct: 616 RRIRLETAQSPQNTAPICIEKDSDVLLRLRQSFDLKYNPKAVLSPSALNTYLDCPLKFYY 675 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----------TPEINHLMKQ 837 + + +L+ + D G++FH + K + ++ Sbjct: 676 KYVARLNTPDEVSPEIDAAKFGSIFHYAAEHIYKDLTAHGKVINKETLEKLLKDETRLQT 735 Query: 838 IIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 +D+ F++ I +I + + L + K + I P + Sbjct: 736 YVDNGFKELFFHLSPEEKPEYNGIQLINSAVILRYIKQLLNKDIK-YAPFTFIGSEQPVQ 794 Query: 889 MAIES---IGI---HLTGFADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDP--- 935 IE G+ + G DRID +K I DYKTG P ++ Sbjct: 795 EDIEIHSTTGVFQSRIGGTIDRID-MKDNIFRIVDYKTGGHADTPPSIQSLFTPSAKRSN 853 Query: 936 ---QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSE--- 988 Q L AA + + D R+VA +L YI + + + + + Sbjct: 854 YVFQTFLYAAIVCRMLQQKHDERQVAPSLLYIHQAASEDYTPVIRMGEPRKTEPVEDFAR 913 Query: 989 ---KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 + +NL +++T + + E PF + ++ L + Sbjct: 914 YESEFRENLDQLLTHIFSPEIPF-AQTD-ETDVCAFCDFKELCKRK 957 >gi|281420136|ref|ZP_06251135.1| putative DnaD and phage-associated domain protein [Prevotella copri DSM 18205] gi|281405936|gb|EFB36616.1| putative DnaD and phage-associated domain protein [Prevotella copri DSM 18205] Length = 995 Score = 287 bits (735), Expect = 5e-75, Method: Composition-based stats. Identities = 142/1108 (12%), Positives = 299/1108 (26%), Gaps = 212/1108 (19%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 F + + +L L+ + + P KRA L +T Sbjct: 3 AFLKYVARDILEKYGNN-----------LSDIAVVFPNKRAALFLNESLARLTDH-PIWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P ++ D+ + T + L + L + + Sbjct: 51 PSYITISDLFRKHSTLKVGDPIKL------------VCDLHKTFVACTGIDETLDHFYGW 98 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L I+ ++ + E ++H L + Y K++ Sbjct: 99 GQLLITDF------DDIDKNMAEAEKLFANLSNIHELDDISYLTEEQKTL-----IKKFF 147 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + + + L + + + G Sbjct: 148 SNFNDD--------HNSELKKRFLQLWSH----------FLDIYKQFNMRLEEQGLAYEG 189 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A+ ++ Q KL D L + + Sbjct: 190 ALYRKVVND----------ENIKFQHKKYLFVGFNMMQVVERKLCDRLMKEGKAHFYWDY 239 Query: 316 VSNE---MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + I + +I + D+ I A E +A Sbjct: 240 DDYYMQNNHEAGHYIREYLKYYPNELNDMPPHDFREIYHNFDNNKDITYISASTENIQAR 299 Query: 373 SIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGI-------------NIDISAG 418 + L+ KK A++ AD L + V L +I+ G Sbjct: 300 YVNQWLKEKKRYKYGKKVAIVLADEGLLQSVIHSLPTNEDIKSLPDYSENDKLAYNITLG 359 Query: 419 IPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNA 470 PL T S+L L+ + ++HP ++ L A + Sbjct: 360 YPLQQTPFYSLLQQLIKLQGVGHPKHSNNYRLHNVLMALRHPYTRYISQNYSKLLSALDE 419 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + S D + SL+ + + L+ ++L Sbjct: 420 QKQFYPTRPFLSMDGDEGLSLLFKDLGETATENEYN--------------LRLIQYLLDI 465 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + ++ S+ L + + Sbjct: 466 LKTIGVNSKEQDDPLFQESLFRTYTLLNRLQELI-------------------------- 499 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I +I +LI ++ E + + ++G LE+R L+F+ +++ N Sbjct: 500 ---QTGDLAVDCITLERLIQQLIQSTSIPFHGEPAEGIQVMGVLETRNLDFEHILVLSCN 556 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 EG PK F+ ++ L T + + A+ F H + + + Sbjct: 557 EGKLPKGVNDASFIPYSLRKAYGLTTIDNKVAIYAYYFHSLLQRSHDITLCYNNATEDGQ 616 Query: 710 T-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + SR++ +LLV D GQ L T ++ + Sbjct: 617 SGEMSRFMLQLLVESHHDIERFSLVAGQNTLRPT--------YEPIEKKLHTLSQLKNLK 668 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKN 827 + + + + Y + + L +D D G +FH + + Sbjct: 669 MLTPTFLNTYLRCEKQFYYKYVEGLIEPDEMDEDEVDNKVFGNIFHRAAELFYLGLASSD 728 Query: 828 T-------------------PEINHLMK------QIIDSHFEKENL----------PPHI 852 ++ +K +++D F +E + Sbjct: 729 ALTTDGKGELKLTRPIVVSKEQLEQALKDESLVYRLVDQAFREELFKVSAAGYRPKYNGL 788 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIGIHLTGFADRID 906 +I + + + + + Q+ + + + + +I ++ + + GF DR+D Sbjct: 789 QLINKEVIARYIRQLVTIDM-RQAPFTILGLELVVKTDVEVETSIGNLSLSIGGFIDRLD 847 Query: 907 L-----LKSG-----FVDITDYKTGDNPK--KETAQKLIDP-----------QLSLEAAA 943 +G + + DYKTG ++ DP Q L + Sbjct: 848 AVAANGHANGNNLAERIRVIDYKTGRISTTRPRELSEVFDPSMLNKHTDYYLQSMLYSII 907 Query: 944 LKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKY--SADELSEKSLKNLIEIVTL 1000 ++ V+ L +I+ D K+ S D E+ +K L ++ Sbjct: 908 VRHNRNLNPAQEPVSPGLLFIQNAGAEDYDPTLKMGKELISSIDVYEEEFMKQLKILIAN 967 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + EQPF + Y L Sbjct: 968 IFDKEQPF--RPTDDKHRCEYCPYAALC 993 >gi|317478933|ref|ZP_07938080.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36] gi|316904910|gb|EFV26717.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36] Length = 963 Score = 287 bits (734), Expect = 6e-75, Method: Composition-based stats. Identities = 143/1082 (13%), Positives = 305/1082 (28%), Gaps = 194/1082 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA T + P Sbjct: 4 FLQLVARDLYAKIGND-----------LSRTAIVFPNKRASLFFNEYLATETD-RPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + L V + ++ R++ + E + Sbjct: 52 AYVSISELFRQLSPLKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL---------LAADF 187 S + A L + ++ ++ L + E ++ L A F Sbjct: 104 SDFDDVDKNLVDADKLFSNLQELKNIMDNYDFLDQEQEEAIRQFFQNFSIEKRTELKAKF 163 Query: 188 ------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 L +++ L EL + +M + + G Sbjct: 164 ISLWDKLGDIYRHYRRNLTELGIAYEGMMYRNVMEQLDT--DRLRYDRYVFVGFNVLNRV 221 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 R + + A+ D + P Y+ Sbjct: 222 ETRFFQLLQDAGK-AMFYWDYDVFY-----------------TRLPLEQKPPYTHEAGEF 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + +L S ++ + +V Sbjct: 264 ILRNLKLFPNQLPETS--------------------------------FDVLRKPKNVRF 291 Query: 362 IEADNEREEAISIAIALR--MSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISA 417 I A E +A + +R L K +A++ + +L V + N++I+ Sbjct: 292 ISASTENAQARYLPQWIRGNEKLRTPSSFKDTAVVLCNESLLLPVLHSIPADVKNVNITM 351 Query: 418 GIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + +L+ + + TL+KHP + + + Sbjct: 352 GFPLAQTPVYSFINALVELQTTGYHTGTGRYTYETVLTLLKHPYTRQLSSHAEVLERR-- 409 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + L ++ + Sbjct: 410 ----LTQDNRFYPLPSELKQ----------------DAFLEQVFTPQNGIAALCSYLTEL 449 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + TL + Sbjct: 450 LREVAVLYRQEKDVEDIF----------------------NQLYRESLFKSYTLVNRLLS 487 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +IETG ++ RL+ + E + + ++G LE+R L+F LI+ LN Sbjct: 488 LIETGELSGVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIMLSLN 547 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK + F+ ++ + T E A+ F ++ + + Sbjct: 548 EGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNTSSDGLN 607 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 SR++ + LV + + GQ + T + + + + Sbjct: 608 RGEMSRFMLQFLVESPHNISLEYLEAGQSPQQAREIEIHKTPEMLQQMFDAYNIHQRPKA 667 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------K 821 +S S + ++ Y R + L + D T GT+FH + + Sbjct: 668 FFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSTLFGTIFHRSAELVYNELTANGR 727 Query: 822 KRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRHLFHKISHSFLE 869 + + ++ ++ +D+ F+++ +I + L Sbjct: 728 EIRKDDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR 787 Query: 870 HEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 ++ + + + + M I++ + + + G DR+D + I DYKTG Sbjct: 788 NDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-TLRIVDYKTGGT 845 Query: 924 P-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 P E ++L P Q L AA L ++ +L YI Sbjct: 846 PKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLYIHRAASESYSP 901 Query: 974 ITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + + ++ + L ++ + + E+ F + ++ Sbjct: 902 VIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTEDTRKCEYCDFRS 959 Query: 1027 LA 1028 L Sbjct: 960 LC 961 >gi|189466028|ref|ZP_03014813.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM 17393] gi|189434292|gb|EDV03277.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM 17393] Length = 965 Score = 287 bits (733), Expect = 9e-75, Method: Composition-based stats. Identities = 147/1086 (13%), Positives = 301/1086 (27%), Gaps = 196/1086 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L P L+ V I P KRA + + P Sbjct: 4 FLQLVAQDLY-----------PKIGNDLSRVAIVFPNKRASLFFNEYLAMQSD-RPIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 S+ ++ + L V + ++ R++ + E + Sbjct: 52 AYVSISELFRQLSPWKSGDPIRL---VCELYKVFR-----EETRSEETLDDFYFWGELLI 103 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------- 183 S + A L + ++ ++ L + + E ++ Sbjct: 104 SDFDDVDKNLVDADRLFSNLQDLKNIMDDYDFLDSEQEEAIRQFFQNFSIERRTQLKEKF 163 Query: 184 --AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 D L ++ L EL + +M K + G Sbjct: 164 ISLWDKLGDIYHHYRRNLEELGIAYEGMMYRYVMEEL--QPDKLKYEHYVFVGFNVLNKV 221 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + + A+ D + P Y+ Sbjct: 222 ETKFFERLREAGK-ALFYWDYDVFY-----------------TRLPRENTPPYTHEAGEF 263 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + L + + + +V Sbjct: 264 ILRNLKIFPNELPEA--------------------------------VFDTLRKPKNVRF 291 Query: 362 IEADNEREEAISIAIALRMSLDEN-------KKKSALITADRNLARRVKLELTRFGINID 414 I A E +A + +R + +K++A++ + L V + N++ Sbjct: 292 ISAPTENAQARYLPEWIRSVTKRDLPETPVKEKENAVVLCNEALLLPVLHSIPHEVKNVN 351 Query: 415 ISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 I+ G PL+ T S +++L+ + A+ +++KHP + Sbjct: 352 ITMGFPLAQTPVYSFVSALIELQTTGYRRDTGRYQYEAVQSVLKHPYTRQLSTSAE---- 407 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 +LE R N+ +LK V L ++ Sbjct: 408 --SLEKQLTRDNRFFPLPSELKQDVFLEQMFTPKT----------------GISALCQYL 449 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + + + T D+ + TL + Sbjct: 450 TDMLREVAVLYRQEQET----------------------DDIFNQLYRESLFKSYTLINR 487 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 +I+ + ++ RL+ + E + + ++G LE+R L+F LI+ Sbjct: 488 LLNLIDN-GELNIQIDTLRRLLCRLLATSNIPFHGEPAIGMQVMGVLETRNLDFRNLIML 546 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706 LNEG PK + F+ ++ + T E A+ F ++ + Sbjct: 547 SLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVTLLYNTASE 606 Query: 707 N-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 SR++ + LV + GQ T + + + + Sbjct: 607 GLNRGEMSRFMLQFLVESPHTISREYLEAGQSPQSGREIRVEKTPEIITRMHERYDVNRH 666 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 +S S + ++ Y R + L + D GT+FH + K Sbjct: 667 PRSLFSPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRAAELVYKDLTA 726 Query: 826 KNTPEINHLMKQIIDS----------HFEKENLPPHI---------DIIWRHLFHKISHS 866 + Q++ + F++E + +I + Sbjct: 727 NGKEIRKEDLDQVLRNDIKLQNYVDIAFKEEFFHVALTEKPEYNGTQLINAKVITSYLRQ 786 Query: 867 FLEHEEKIQSSI----EKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 L ++ + EK I + + + +++ G DRID K + I DYKTG Sbjct: 787 LLRNDLQYAPFFMEGMEKKVTEIIEIETSQGKLALNIGGTIDRID-SKDDTLRIVDYKTG 845 Query: 922 DNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 +P E ++L P Q L A+ + ++ +L YI Sbjct: 846 GSPKTPENIKQLFTPADGRPNYIFQTFLYASIMCRKQSLKVAP----SLLYIHRAASETY 901 Query: 972 DCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + + ++ + L ++ + N E+ F K ++ Sbjct: 902 SPVIEMGEARQPKIPVNNFAFYEDEFRERLQTLLQEIYNPEEAFT--QTEDTKKCEFCDF 959 Query: 1025 DHLARV 1030 L R Sbjct: 960 RELCRR 965 >gi|255009002|ref|ZP_05281128.1| hypothetical protein Bfra3_07667 [Bacteroides fragilis 3_1_12] gi|313146742|ref|ZP_07808935.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135509|gb|EFR52869.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 957 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 139/1087 (12%), Positives = 306/1087 (28%), Gaps = 210/1087 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYSKIGND-----------LSRTAIVFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDLYP 132 S+ ++ ++ L L + L ++R + + Sbjct: 52 AYVSISELFQQLSVLKLGDPIRL------------VCELYKVFREETKSEESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----- 187 E +S + A L + ++ +D + L E+ +F Sbjct: 100 ELLISDFDDVDKNMVDADKLFTNLQDLKNV---MDDYNFLDEEQEQAIQQFFLNFSIEKR 156 Query: 188 -------------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 L + + L E + ++ + G Sbjct: 157 TLLKEKFISLWDKLGNIYRQYRRNLEESGLAYEGMLYRNVIEHLEP--ESLKYDRYVFVG 214 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 + + A+ D Sbjct: 215 FNVLNKVETHFFRQLQSTGK-ALFYWDYDV------------------------------ 243 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 L + + G R++ + + LP ++ + + Sbjct: 244 ----FYTQLPSQHKQRHEAGE----FINRNLKLFPNELPA-------------ELFDELR 282 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 V I + E +A + +R +L +K++A++ + L V + N++ Sbjct: 283 KPKKVRFISSPTENAQARYLPEWIRENLSSEEKENAVVLCNEALLLPVLHSIPEEVRNVN 342 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRA 467 I+ G PL+ T S + ++L + A+ T++KHP + + Sbjct: 343 ITMGFPLAQTPVYSFINAILELQTSGYRTESGRYTYEAVQTILKHPYTRRLSDNAEPLQR 402 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + N+ +LK + R + + + Sbjct: 403 ------ELTKTNRFYPFPSELK-------------------KDRFLDLLFTPRNGIRELC 437 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + L N D+ + TL++ Sbjct: 438 IYITELLKEVSILYRHEQEN-------------------DDIFNQLYRESLFKSFTLANR 478 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 +I+ ++ ++ ++++ + E + + I+G LE+R L+F L+L Sbjct: 479 LLNLIDN-GELQVRIDTLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLL 537 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706 LNEG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 538 SLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSD 597 Query: 707 N-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPL 763 SR++ + L+ + + GQ + R + F Sbjct: 598 GLNRGEWSRFMLQFLIEWSHEISREYLEAGQSPQNSRDIRITKTPEIIDRLYQTYDFSHN 657 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S S + ++ Y R + +L + D GT+FH Sbjct: 658 ADALM-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLAYLDL 716 Query: 824 INKNTPEINHLMKQIIDS----------HFEKENLPP---------HIDIIWRHLFHKIS 864 +++++ F++E + +I + Sbjct: 717 TAHKQEIHKEDIERLLRDNVRLQNYVDTAFKEEFFHVPLDEKPEYNGVQLINSKVITSYL 776 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIG------IHLTGFADRIDLLKSGFVDITDY 918 L ++ + + I + I+ G + + G DR+D K G + I DY Sbjct: 777 RQLLRNDLQ-YAPFRMIGMEQKVTEDIQIEGPKGMLSLKIGGTIDRMD-SKEGTLRIVDY 834 Query: 919 KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 KTG +PK ++L P Q L AA + ++ +L YI Sbjct: 835 KTGGSPKVPANVEQLFTPAEGRPNYIFQTFLYAAIMARQQTLKVAP----SLLYIHRAAS 890 Query: 969 FKIDCITNDKKKYSADELSE-------KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + + + + + L+ ++ + N ++ F L K Sbjct: 891 ESYSPVIEMGEARKPKLPVDDFSVYEKEFRERLLALLEEIYNDQEEFTQTEDL--KKCEY 948 Query: 1022 SEYDHLA 1028 ++ + Sbjct: 949 CDFKAMC 955 >gi|242280177|ref|YP_002992306.1| hypothetical protein Desal_2713 [Desulfovibrio salexigens DSM 2638] gi|242123071|gb|ACS80767.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638] Length = 967 Score = 282 bits (720), Expect = 3e-73, Method: Composition-based stats. Identities = 143/1042 (13%), Positives = 304/1042 (29%), Gaps = 166/1042 (15%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69 I+ F + ++N + + L+ VT+ VP R + L+ Sbjct: 9 ISWKEDFIENLATTIINDSDGD-----------LSKVTVIVPHHRPARYLKKALAASEQL 57 Query: 70 KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 K ILP I S D + L+ + + ++ L +I RN+ ++ Sbjct: 58 PKPCILPEIYSFSDF---VSSLIPKLTAEFPRKIGKLDQVGLLFNIIEKLRNESTGMLAK 114 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + P LA +++ + ++ K +L L + W + L+ Sbjct: 115 M--------PTDLQLFFPWGTRLASLLEDLLRQDIKPRNLTML-QGEVLEWAAALLEELE 165 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 I + E L + ++ L+ + +AG G Sbjct: 166 IIFVRYMEELEKRGWTTSGLENRTLVENFNGLDDILKDRQLYLAGFYGVSGVEDMF---- 221 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 L D L ++ Sbjct: 222 ----------------------------------------------FRYLWDNLGLQ--- 232 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + GR + + + N ++ E + Sbjct: 233 -VIWHSDPGLAAGRKGHF-AVREHRLWLQNWKAEAVSDHSANGSCQLPELKFFEGFDRHS 290 Query: 370 EAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + + +R L + + A++ D +L V L +I+IS G PL + + Sbjct: 291 QLSA----MREELCSQKVEGCAVVLPDTSLLLPVMHHLPE--QDINISMGYPLERSALNG 344 Query: 429 ILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 ++ ++L + I L++HP K R ALR Sbjct: 345 LVEAVLKLQENRNGRTFYWKDILALIRHPYLKMLEVNGDQPLRTIFHQWENALRHGAPYA 404 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 D+ D + D +N + + CI +T Sbjct: 405 DVTDFVPVYSDDNGNLVDNPETTEELRS-------------EAVQICIDGFKDIETLSEL 451 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 ++S+ + L L E + ++ + ++ E+ + Sbjct: 452 ADSLQAMSEMLRQRGGTLW--------NRYLLDSECLFRLMNEVIPELRESSISNEIFGQ 503 Query: 604 EWI-DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 I +L+ + V + + S + +LG LESRLLNF + + P +P Sbjct: 504 SLCFSIFRQLLSSQRVSFEPDPISGMQVLGMLESRLLNFKRTFILDTVDEKLPGTDPYDP 563 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSLREN----NIPTIASRWLQ 717 L ++ L+L + + A ++F G+ + +I SR+++ Sbjct: 564 LLPDQLRHLLDLPDSRERESVATYNFYRLIMGSEESCIFYQSGVQPGLLDSKSIRSRFVE 623 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 +LL + G+ + + + + + + S Sbjct: 624 QLLWEIEQQR-KEIITPGEEFPLKAVNFPVGAIVNNPAAIPKEPLQDKLENLLKFKGLSP 682 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTP 829 S I + P + R + + +D DR G L H+++ + ++ +NK Sbjct: 683 SAIDCYVGCPKLFFFRYLSNVRESVTVDQDGDRAGFGDLIHSVLKDFLEPHLNKEICGKD 742 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--A 887 ++ + E+++L P++ + + + L K + + + A Sbjct: 743 LDAQALQDLFMLRLERDSLYPNLAYDIKKSLEQAGKNRLALFLKSLKPTKIVELESDSQA 802 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD----NPKKETAQ------------- 930 ++ ++ + + G DR+D G + DYKTG + Sbjct: 803 ELEMDDFSVRIHGRVDRVDERA-GERYVLDYKTGRLHLPRKSFWEDENIWGPLLDDPQAI 861 Query: 931 -------------KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL-KQKFKIDCITN 976 QL L + L ++ + Sbjct: 862 YHDGTPFLEMIKNSADSLQLPLYLLM-----DHHTSGELPRQAALVELVTDGREMGLFDS 916 Query: 977 DKKKYSADELSEKSLKNLIEIV 998 +E+ E + L +++ Sbjct: 917 KTGDEEREEIIETKIPALTKVI 938 >gi|60681670|ref|YP_211814.1| hypothetical protein BF2191 [Bacteroides fragilis NCTC 9343] gi|60493104|emb|CAH07885.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 957 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132 S+ ++ + L L + L I+R + + Sbjct: 52 AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185 E +S + A L + ++ +E L + + ++ Sbjct: 100 ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159 Query: 186 --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F L + + ++L EL + ++ + G Sbjct: 160 KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D Sbjct: 218 LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ R ++ + + + L ++ N Sbjct: 246 --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V I + E +A + + +L +K++A++ + L V + N++I+ Sbjct: 286 KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + ++L + A+ T++KHP + + + Sbjct: 346 GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + + L +I + Sbjct: 403 ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + D+ + TL + Sbjct: 444 LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +I+ + ++ ++ ++++ + E + + I+G LE+R L+F L+L LN Sbjct: 482 LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 541 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ + L+ + + GQ + R R F Sbjct: 601 RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823 S S + ++ Y R + +L + D GT+FH + Sbjct: 661 LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719 Query: 824 -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867 + + ++ L++ F +++ I +I + Sbjct: 720 KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779 Query: 868 LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L ++ + +E+ V I + + + + + G DR+D K G + I DYKTG Sbjct: 780 LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838 Query: 923 NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 +PK ++L P Q L AA + ++ +L YI Sbjct: 839 SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894 Query: 973 CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + + ++ + L++++ + + ++ F K ++ Sbjct: 895 PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTKDTKKCEYCDFK 952 Query: 1026 HLA 1028 + Sbjct: 953 AMC 955 >gi|253565410|ref|ZP_04842865.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945689|gb|EES86096.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 957 Score = 281 bits (718), Expect = 5e-73, Method: Composition-based stats. Identities = 137/1083 (12%), Positives = 310/1083 (28%), Gaps = 202/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132 S+ ++ + L L + L I+R + + Sbjct: 52 AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185 E +S + A L + ++ +E L + + ++ Sbjct: 100 ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159 Query: 186 --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F L + ++L EL + ++ + G Sbjct: 160 KEKFISLWDKLGDIYHRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D Sbjct: 218 LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ R ++ + + + L ++ N Sbjct: 246 --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V I + E +A + + +L +K++A++ + L V + N++I+ Sbjct: 286 KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + ++L + A+ T++KHP + + + Sbjct: 346 GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + + L +I + Sbjct: 403 ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + D+ + TL + Sbjct: 444 LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +I+ + ++ ++ ++++ + E + + I+G LE+R L+F L+L LN Sbjct: 482 LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 541 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ + L+ + + GQ + R R F Sbjct: 601 RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823 S S + ++ Y R + +L + D GT+FH + Sbjct: 661 LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719 Query: 824 -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867 + + ++ L++ F +++ I +I + Sbjct: 720 KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779 Query: 868 LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L ++ + +E+ V I + + + + + G DR+D K G + I DYKTG Sbjct: 780 LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838 Query: 923 NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 +PK ++L P Q L AA + ++ +L YI Sbjct: 839 SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894 Query: 973 CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + + ++ + L++++ + + ++ F K ++ Sbjct: 895 PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952 Query: 1026 HLA 1028 + Sbjct: 953 AMC 955 >gi|325269865|ref|ZP_08136475.1| hypothetical protein HMPREF9141_1685 [Prevotella multiformis DSM 16608] gi|324987838|gb|EGC19811.1| hypothetical protein HMPREF9141_1685 [Prevotella multiformis DSM 16608] Length = 958 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 138/1089 (12%), Positives = 299/1089 (27%), Gaps = 213/1089 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL+ + ++ + + P KRA L + P Sbjct: 4 FLEYVAQDLLDKYGTD-----------MSGIAVVFPNKRASLFLNQALAR-MAGRPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D + + + L + + Sbjct: 52 AYITISDFFRQHSELTVADPIK------------SICDLYKTYGEVTGN----------- 88 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189 + + + L D I+ DL L + Y A L Sbjct: 89 -VGETLDQFYGWGQLLLADFDDIDKNMADAHRVFSNIRDLRELDDISYLNEEQKA--ELH 145 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + L + + + + Sbjct: 146 RFFANFDDNPEG------------LKERFIMLWGR----------LNDIYNQFKKKLHSQ 183 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G + ++ + T Q +L + + Sbjct: 184 GLAYEGMLYREVVEED----------DIQTQYKHYVFVGFNVLQKVEQRLFKRFKDEEKA 233 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 M + + D + + + +++ I A E Sbjct: 234 SFYWDYDRYYMRRTNEAGNYIRRWLDRFP-NALPNDCDDLYDNLDKEKEISFISAPTENL 292 Query: 370 EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A I LR + K++A++ D +L + V + +++++ G PL T +S Sbjct: 293 QARFITEWLRDGDRYKDGKRTAIVLCDEHLLQTVIHCIPNEVESLNVTTGYPLQQTPIAS 352 Query: 429 ILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++T LL + + +++HP K+ P+ + Sbjct: 353 MVTQLLTLQTEGFSVQEQGYRLHYVNRVLRHPYGKYLVPDV----------------AEV 396 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + A H D+ LVD + + I + Sbjct: 397 IERLNKERQFYITPQAGSLFEYHP---------GDRRHLPALVDWLAETIRTIGVNGATD 447 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 SI L + ++A+ Sbjct: 448 KDPLFEESIFRMFTLLTRLSDLM-----------------------------ASGDLEAD 478 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I + ++T+LI ++ E + + ++G LE+R L+FD +++ NEG PK + Sbjct: 479 KIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDS 538 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719 F+ +++ +L T E + ++ F + + + + T SR++ +L Sbjct: 539 SFIPHLIRKAYDLTTIENKVSIYSYYFHSLIQRAKDITFLYNNSTKGSRTGEMSRFMLQL 598 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 +V + GQ + ++ K+ + + +S + I I Sbjct: 599 MVEWNHPIHRQTLQAGQEPMH--------SEAQAVKKDEAVRRKLDEISYFSPTAINTYI 650 Query: 780 NDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINK------------ 826 + P + + I + D D G +FH + +K + K Sbjct: 651 SCPLKYFFKYIAGIKENDETDVDDVDNRMFGNIFHAAAQLMYEKLLPKEVITAKDIDYLL 710 Query: 827 ---------NTPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHS 866 + I + ++D F E + +I R + K H Sbjct: 711 KTGKSTRPTSAGHIPATLDDVVDEAFATELFHQQAGSRKHPKLNGLQLINREVIIKYLHQ 770 Query: 867 FLEHEEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDL----LKSGFVDIT 916 L + + + I + + ++ G I G DR+D + + Sbjct: 771 LLRIDR-RMTPLRVIGHEFDVRQTLTVKVNGTEKQIETGGRIDRLDEICLNTDCSRLRVV 829 Query: 917 DYKTG--DNPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCRKV--ANLF 961 DYKTG + ++ DP Q L + + L Sbjct: 830 DYKTGGKAAEPLKNVDEVFDPKNIGKKSDYTMQAMLYSLIEARHDPEHNPDHRPVSPALL 889 Query: 962 YIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 +I+ + + ++ A + +NL E + + N + F+ Sbjct: 890 FIQHAGGKDYSPVLSMDGEEITDATIYEKDFFRNLTEKLEEINNPDIAFV--PTDDWDRC 947 Query: 1020 IQSEYDHLA 1028 Y + Sbjct: 948 KYCPYKQMC 956 >gi|265763689|ref|ZP_06092257.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256297|gb|EEZ27643.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 957 Score = 281 bits (717), Expect = 6e-73, Method: Composition-based stats. Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132 S+ ++ + L L + L I+R + + Sbjct: 52 AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185 E +S + A L + ++ +E L + + ++ Sbjct: 100 ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159 Query: 186 --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F L + + ++L EL + ++ + G Sbjct: 160 KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D Sbjct: 218 LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ R ++ + + + L ++ N Sbjct: 246 --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V I + E +A + + +L +K++A++ + L V + N++I+ Sbjct: 286 KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + ++L + A+ T++KHP + + + Sbjct: 346 GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + + L +I + Sbjct: 403 ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + D+ + TL + Sbjct: 444 LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +I+ + ++ ++ ++++ + E + + I+G LE+R L+F L+L LN Sbjct: 482 LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 541 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ + L+ + + GQ + R R F Sbjct: 601 RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPDA 660 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823 S S + ++ Y R + +L + D GT+FH + Sbjct: 661 LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719 Query: 824 -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867 + + ++ L++ F +++ I +I + Sbjct: 720 KRDVHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779 Query: 868 LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L ++ + +E+ V I + + + + + G DR+D K G + I DYKTG Sbjct: 780 LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLRIGGTIDRMD-SKEGTLRIVDYKTGG 838 Query: 923 NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 +PK ++L P Q L AA + ++ +L YI Sbjct: 839 SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894 Query: 973 CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + + ++ + L++++ + + ++ F K ++ Sbjct: 895 PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952 Query: 1026 HLA 1028 + Sbjct: 953 AMC 955 >gi|301163213|emb|CBW22763.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 957 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132 S+ ++ + L L + L I+R + + Sbjct: 52 AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185 E +S + A L + ++ +E L + + ++ Sbjct: 100 ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159 Query: 186 --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F L + + ++L EL + ++ + G Sbjct: 160 KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D Sbjct: 218 LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ R ++ + + + L ++ N Sbjct: 246 --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V I + E +A + + +L +K++A++ + L V + N++I+ Sbjct: 286 KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + ++L + A+ T++KHP + + + Sbjct: 346 GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + + L +I + Sbjct: 403 ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + D+ + TL + Sbjct: 444 LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +I+ + ++ ++ ++++ + E + + I+G LE+R L+F L+L LN Sbjct: 482 LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 541 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ + L+ + + GQ + R R F Sbjct: 601 RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPGA 660 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823 S S + ++ Y R + +L + D GT+FH + Sbjct: 661 LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719 Query: 824 -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867 + + ++ L++ F +++ I +I + Sbjct: 720 KRDIHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779 Query: 868 LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L ++ + +E+ V I + + + + + G DR+D K G + I DYKTG Sbjct: 780 LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLKIGGTIDRMD-SKEGTLRIVDYKTGG 838 Query: 923 NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 +PK ++L P Q L AA + ++ +L YI Sbjct: 839 SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894 Query: 973 CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + + ++ + L++++ + + ++ F K ++ Sbjct: 895 PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTEDTKKCEYCDFK 952 Query: 1026 HLA 1028 + Sbjct: 953 AMC 955 >gi|260592505|ref|ZP_05857963.1| conserved hypothetical protein [Prevotella veroralis F0319] gi|260535551|gb|EEX18168.1| conserved hypothetical protein [Prevotella veroralis F0319] Length = 960 Score = 280 bits (716), Expect = 8e-73, Method: Composition-based stats. Identities = 141/1091 (12%), Positives = 307/1091 (28%), Gaps = 215/1091 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL+ + LA + + P KRA L E K P Sbjct: 4 FLEHIAKDLLDKYGTD-----------LAHIAVVFPNKRASLFLNQELAR-LAGKPIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D + + + L + Sbjct: 52 AYITISDFFRQHSKLTVADPIK------------SVCDLYKSYIEVTGH----------- 88 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189 + + + L D I+ DLH L + Y L+ Sbjct: 89 -VDETLDQFYGWGQLLLADFDDIDKNMADTKMVFANIRDLHELDDVSYLTDEQKT--ELR 145 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + +P G + + A I + + + Sbjct: 146 RFFANFDD--------NPEGIREKFITLWARLKD-------IYDNF-------KQRLRSQ 183 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G + + + + Q L L + Sbjct: 184 GLAYEGMLYRDVAEQNSIETKYEH----------YIFIGFNVLQKVEQHLFKHLKKDNKA 233 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 M + + D + + N+ + I A E Sbjct: 234 SFYWDYDRYYMNSNNEAGTYIHQWLDKFPNSLPNDNDEIYDNLGN-DKQINFISAPTENL 292 Query: 370 EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A I L+ + K++ ++ D +L + V + ++I+ G PL T +S Sbjct: 293 QARYITEWLKEDNRYKDGKRTVIVLCDEHLLQTVIHCIPDEVKTLNITTGFPLKQTPIAS 352 Query: 429 ILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ LL + ++ +++HP K+ E L + Sbjct: 353 MVMQLLALQLEGYSQSEQGYRLRYLSRVLRHPYGKYLISE------AERLIEKIKEEKEF 406 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++ ++ L + + H+P Sbjct: 407 YVNVNEISQLTYHQS----DKQHLPE---------------------------------- 428 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + W T+ + ++ TL + ++ + ++A+ Sbjct: 429 --------LIHWLSDTIRIIGMNGAAVNKDPLFQESVFRMYTLLTRLYDLM-SSGDLEAD 479 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I + ++ +LI ++ E + + ++G LE+R L+FD +++ NEG PK Sbjct: 480 KIIFRRLLNQLITTTSIPFHGEPAQGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDA 539 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719 F+ +++ L T + + ++ F + + + + T SR++ +L Sbjct: 540 SFIPHLIRKAYGLTTIDNKVSIYSYYFHGLIQRAKDVTFLYNNSTQGSQTGEMSRFMLQL 599 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 +V K GQ + ++ + + +S + I I Sbjct: 600 MVEWNHPIHRLALKAGQELMRIDTEI--------VYKDDAVMNKLDEIGRFSPTAINTYI 651 Query: 780 NDPYAVYARRILKLDFIPHFKK-DPDRTDRGTLFHNIITELIKKRINKN------TPEIN 832 Y + I+ + + ++ D D G +FH + +K + ++ ++ Sbjct: 652 RCSLKFYFKYIVGISELEDVEEDDIDGRLFGNIFHCAAQLMYEKLLPRDIITAKNIDDLL 711 Query: 833 H---------------LMKQIIDSHFEKENLPPHI-----------DIIWRHLFHKISHS 866 ++ I+D F +I R + K Sbjct: 712 KTGKSSQSITSGNSQLTLEDIVDEVFATTLFNKEAGTRTYPKLNGLQLINREVIVKYLRQ 771 Query: 867 FLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRIDL---LKSG-FVDIT 916 L + + + + + + I+ + + G DR+D + + Sbjct: 772 LLRID-QRSAPLRVLAHEFDVNRSITIKVGDTEKELRVGGRVDRLDEVFSDSDKAQLRVV 830 Query: 917 DYKTGD--NPKKETAQKLIDP------------QLSLEAAALKAGSFSQIDCRKVA---N 959 DYKTG ++ ++ DP Q + +A +++ A Sbjct: 831 DYKTGGRVAAPLKSIDEVFDPKNVAFKKSDYTMQAMFYSLI-EAEHDDKLNPLHHAVSPA 889 Query: 960 LFYIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017 L +I+ I K+ E E ++LI+ + L N F S L Sbjct: 890 LLFIQHAGGDDYSPILSMEGKEITDVTEYKEPFFEHLIQQLGDLFNRNIAFSSTDNL--N 947 Query: 1018 SNIQSEYDHLA 1028 + Y + Sbjct: 948 ACSYCPYKQMC 958 >gi|53713423|ref|YP_099415.1| hypothetical protein BF2134 [Bacteroides fragilis YCH46] gi|52216288|dbj|BAD48881.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 957 Score = 280 bits (715), Expect = 1e-72, Method: Composition-based stats. Identities = 137/1083 (12%), Positives = 311/1083 (28%), Gaps = 202/1083 (18%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + L + L+ I P KRA + + P Sbjct: 4 FLQLVAQDLYCKIGND-----------LSRTAIIFPNKRASLFFNEHLANQSD-QPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII----KDLYP 132 S+ ++ + L L + L I+R + + Sbjct: 52 AYLSISELFQHLSVLKLGDPIRL------------VCELYKIFREETNSDESLDDFYFWG 99 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------LAA- 185 E +S + A L + ++ +E L + + ++ Sbjct: 100 ELLISDFDDVDKNLVHADKLFTNLQDLKNVMDDYEFLDQEQEQAIQQFFQNFSIEKRTLL 159 Query: 186 --DF------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F L + + ++L EL + ++ + G Sbjct: 160 KEKFISLWDKLGDIYRRYHKKLEELGFAYEGMLYRNVIEQLEP--DSLKYDCYVFVGFNV 217 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + N A+ D Sbjct: 218 LNKVETHFFQQLQNAGK-ALFYWDYDVFY------------------------------- 245 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ R ++ + + + L ++ N Sbjct: 246 --------------------TQLPSRQKQRHEAGEFINRNLKLFPNELPAELFNELIKPK 285 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V I + E +A + + +L +K++A++ + L V + N++I+ Sbjct: 286 KVRFISSPTENAQARYLPQWVHENLSNEEKENAVVLCNEALLLPVLHSIPEVVRNVNITM 345 Query: 418 GIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGFPEKYLSRAKNA 470 G PL+ T S + ++L + A+ T++KHP + + + Sbjct: 346 GFPLAQTPVYSFINAILELQTSGYRTDSGRYIYDAVQTVLKHPYTRRLSDKAEPLQR--- 402 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + N+ +LK + + L +I + Sbjct: 403 ---ELTKTNRFYPFPSELKK----------------DKFLDILFTPRNGIRELCVYITEL 443 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + + D+ + TL + Sbjct: 444 LKEVSVLYRQEQES----------------------DDIFNQLYRESLFKSFTLVNRLLN 481 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +I+ + ++ ++ ++++ + E + + I+G LE+R L+F L+L LN Sbjct: 482 LIDN-NELQVRIETLKRLLNKILNAANIPFHGEPAIGMQIMGVLETRNLDFRNLLLLSLN 540 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-I 708 EG PK+ ++ F+ ++ + T E A+ F ++ + + Sbjct: 541 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLMYNTSSDGLN 600 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ + L+ + + GQ + R R F Sbjct: 601 RGEWSRFMLQFLIEWPHEISREYLEAGQSPQNSKEIRITKTPEIIDRLYRTYDFSRNPNA 660 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--- 823 S S + ++ Y R + +L + D GT+FH + Sbjct: 661 LI-LSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTAN 719 Query: 824 -INKNTPEINHLMKQ----------IIDSHF-----EKENLPPHIDIIWRHLFHKISHSF 867 + + ++ L++ F +++ I +I + Sbjct: 720 KRDIHKEDLERLLRDNIRLQNYVDIAFKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQL 779 Query: 868 LEHEEK----IQSSIEKIFVN-IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L ++ + +E+ V I + + + + + G DR+D K G + I DYKTG Sbjct: 780 LRNDLQYAPFRMMGMEQEVVEDIRIEGPVGKLSLKIGGTIDRMD-SKEGTLRIVDYKTGG 838 Query: 923 NPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 +PK ++L P Q L AA + ++ +L YI Sbjct: 839 SPKVPANIEQLFTPAEGRPNYIFQTFLYAAIMARQQALKVAP----SLLYIHRAASESYS 894 Query: 973 CITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + + ++ + L++++ + + ++ F K ++ Sbjct: 895 PVIEIGEARKPKLPVDDFSVYEDEFRERLLKLLEEIYDDKEEFT--QTKDTKKCEYCDFK 952 Query: 1026 HLA 1028 + Sbjct: 953 AMC 955 >gi|296448613|ref|ZP_06890483.1| double-strand break repair protein AddB [Methylosinus trichosporium OB3b] gi|296253885|gb|EFH01042.1| double-strand break repair protein AddB [Methylosinus trichosporium OB3b] Length = 520 Score = 273 bits (698), Expect = 9e-71, Method: Composition-based stats. Identities = 130/522 (24%), Positives = 216/522 (41%), Gaps = 13/522 (2%) Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 A I + L + ++ + L+ + E + E Sbjct: 2 ADADWRAIEDALARLDAALAPLATLPAEAPLTARVRAHAEALERIIGAEAAGEGAEQWLE 61 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 L++ + + RL L ILG LE+RLL Sbjct: 62 LVDALAAAGGGLAFDA-------GGYSSFFDRLAFETAAPSPRRAHPRLKILGLLEARLL 114 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 + D ++L GL+E +WP FL+R M++ L L E+ IGQ AHDF +A R ++ Sbjct: 115 DADLVLLAGLDETIWPPQAETGAFLNRTMRAQLGLSPPERRIGQTAHDFSLAFCAREVVL 174 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 +RS + + PT+ SR++ RL L G + F K RG LD+ + RP P Sbjct: 175 SRSRKRDGSPTVVSRFVARLAALAGEN-FSACKARGDRARALAAALDHPAEIRAAARPLP 233 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 PP+E +P S + I++L DPY+V+A +L+L +P + + G H + + Sbjct: 234 RPPVELRPVRLSVTRIEKLRRDPYSVFAEHVLRLAPLPPLGAEKGAREIGVAVHAALAKF 293 Query: 820 IKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + + + + + + P L E + + Sbjct: 294 SEAHPKGPLPEDASERLLILARAELAEFLDDPSFIAFQWPRLETGLRHALAFERERRKIA 353 Query: 879 EKIFVNIPAKMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 + F+ I + + L+ ADRI+L +G + DYKTG P + P Sbjct: 354 SETFIEIRGEWRLPLADGGVFTLSCVADRIELDAAGAAFVVDYKTGTPPSVKQVDAGFSP 413 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL+LEAA ++AG+F I R V+ Y+RL K + K S ++ + NL+ Sbjct: 414 QLTLEAAMIEAGAFPPIGVRAVSGAAYVRLGGKDGGETRELKFKDKSFSDVVAEHRANLL 473 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 E++ ++ P+ S E ++ +YDHLARVAEW + Sbjct: 474 ELLNQFRDPATPYPSRP-FVEFASRYGDYDHLARVAEWSRDG 514 >gi|237716367|ref|ZP_04546848.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407969|ref|ZP_06084517.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644252|ref|ZP_06722021.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294807962|ref|ZP_06766741.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|229444014|gb|EEO49805.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354777|gb|EEZ03869.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640416|gb|EFF58665.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294444846|gb|EFG13534.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 959 Score = 273 bits (698), Expect = 1e-70, Method: Composition-based stats. Identities = 146/1087 (13%), Positives = 306/1087 (28%), Gaps = 204/1087 (18%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F + + L + L+ + P KRA + + Sbjct: 2 QSFLQLVAHDLYAKIGND-----------LSRTALIFPNKRANLFFNEYLAGESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P S+ D+ ++ L + E W L D+ Sbjct: 50 SPAAMSISDLFQKLSVQKSGDPIRLVCELYKVFKEETQSQETLDDFYFWGELLISDFDDV 109 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK----------NEKYGMW 180 + ++L +++D E E A++ + Sbjct: 110 DKNM-----VDADKLFSNLQDLKNLMDDY--EFLDKEQEEAIQQFFQNFSIERRTELKEK 162 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 ++ D L ++ E L EL + ++ + I G Sbjct: 163 FISLWDKLGTIYHHYRENLTELGIAYEGMLYRNVIEQLDT--DQLKYDKYIFVGFNVLNK 220 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + + + + Q + Sbjct: 221 VEN-------------------------EFFRKLKDAGKALFYWDYDIFYTQQIRKHEAG 255 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 +FL R++ + LP + K + Sbjct: 256 EFLK------------------RNLGEFPNELPESFF-------------DTFKEPKKIR 284 Query: 361 LIEADNEREEAISIAIALR-------MSLDENKKKSALITADRNLARRVKLELTRFGINI 413 I A E +A + ++ +E +K++A++ + L V + + N+ Sbjct: 285 YISASTENAQARFLPEWIKMITDNHSQIAEEKEKENAVVLCNEALLLPVLHSIPQEVKNV 344 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSR 466 +I+ G PL+ T S + + + + A++ ++KHP + Sbjct: 345 NITMGFPLAQTPIYSFINAAMELQTNGYRSDTGRFTYEAVSAILKHPYTRQISS------ 398 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 LE + N+ +LK + L D+ Sbjct: 399 HAGPLERELTKTNRFYPLPSELKQ----------------DDFLATLFTPRNGIKELCDY 442 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 +++ I + T + + L+ E ++ + Sbjct: 443 LIELIKDISTIYRKEGEY------------------------NDIFNQLYRESLFQSHTK 478 Query: 587 LFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + +IT+++ + E + + ++G LE+R L+F LI Sbjct: 479 INRLYSLIESGELSIRTDTLKRLITKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNLI 538 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704 + LNEG PK+ ++ F+ ++ + T E A+ F ++ + Sbjct: 539 ILSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTS 598 Query: 705 ENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 + SR++ +LLV G D + GQ T + + + + Sbjct: 599 SDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQIEKTPEVLRRIYRTYDST 658 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S S + ++ Y R + L + D GT+FH Sbjct: 659 NPSSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLSAQLAYTDL 718 Query: 824 INKN----TPEINHLMKQI------IDSHFEKENLPPH---------IDIIWRHLFHKIS 864 +I L++ +D F++E I +I + Sbjct: 719 TANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKVAPEEKPEYNGIQLINSKVIVSYL 778 Query: 865 HSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT--GFADRIDLLKSGFVDITDY 918 L ++ + + E + + ++ I L G DR+D K + I DY Sbjct: 779 KQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLGGTIDRMD-AKESTLRIVDY 836 Query: 919 KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 KTG +PK ++L P Q L AA + + L YI Sbjct: 837 KTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRKQSLMVAPA----LLYIHRAAS 892 Query: 969 FKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + + ++ + L ++ + N ++PF+ K Sbjct: 893 ESYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIFNEKEPFM--QTEDTKKCSY 950 Query: 1022 SEYDHLA 1028 ++ + Sbjct: 951 CDFKAIC 957 >gi|298481371|ref|ZP_06999564.1| conserved hypothetical protein [Bacteroides sp. D22] gi|298272575|gb|EFI14143.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 959 Score = 273 bits (697), Expect = 1e-70, Method: Composition-based stats. Identities = 146/1087 (13%), Positives = 306/1087 (28%), Gaps = 204/1087 (18%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F + + L + L+ + P KRA + + Sbjct: 2 QSFLQLVAHDLYAKIGND-----------LSRTALIFPNKRANLFFNEYLAGESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P S+ D+ ++ L + E W L D+ Sbjct: 50 SPAAMSISDLFQKLSVQKSGDPIRLVCELYKVFKEETQSQETLDDFYFWGELLISDFDDV 109 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK----------NEKYGMW 180 + ++L +++D E E A++ + Sbjct: 110 DKNM-----VDADKLFSNLQDLKNLMDNY--EFLDKEQEEAIQQFFQNFSIERRTELKEK 162 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 ++ D L ++ E L EL + ++ + I G Sbjct: 163 FISLWDKLGTIYHHYRENLTELGIAYEGMLYRNVIEQLDT--DQLKYDKYIFVGFNVLNK 220 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + + + + Q + Sbjct: 221 VEN-------------------------EFFRKLKDAGKALFYWDYDIFYTQQIRKHEAG 255 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 +FL R++ + LP + K + Sbjct: 256 EFLK------------------RNLGEFPNELPESFF-------------DTFKEPKKIR 284 Query: 361 LIEADNEREEAISIAIALR-------MSLDENKKKSALITADRNLARRVKLELTRFGINI 413 I A E +A + ++ +E +K++A++ + L V + + N+ Sbjct: 285 YISASTENAQARFLPEWIKMITDNHSQIAEEKEKENAVVLCNEALLLPVLHSIPQEVKNV 344 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSR 466 +I+ G PL+ T S + + + + A++ ++KHP + Sbjct: 345 NITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVSAILKHPYTQQISS------ 398 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 LE + N+ +LK + L D+ Sbjct: 399 HAGPLERELTKTNRFYPLPSELKQ----------------DDFLTTLFTPRNGIKELCDY 442 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 +++ I + T + + L+ E ++ + Sbjct: 443 LIELIKDISTIYRKEGEY------------------------NDIFNQLYRESLFRSHTK 478 Query: 587 LFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + +IT+++ + E + + ++G LE+R L+F LI Sbjct: 479 INRLYSLIESGELSIRTDTLKRLITKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNLI 538 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704 + LNEG PK+ ++ F+ ++ + T E A+ F ++ + Sbjct: 539 ILSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTS 598 Query: 705 ENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 + SR++ +LLV G D + GQ T + + + + Sbjct: 599 SDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQIEKTPEVLRRIYRTYDST 658 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S S + ++ Y R + +L + D GT+FH Sbjct: 659 NPSSVILSPSALNAYLDCRLRFYYRYVARLKTPDEVSAEIDSALFGTIFHLSAQLAYTDL 718 Query: 824 INKN----TPEINHLMKQI------IDSHFEKENLPPH---------IDIIWRHLFHKIS 864 +I L++ +D F++E I +I + Sbjct: 719 TANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKVAPEEKPEYNGIQLINSKVIVSYL 778 Query: 865 HSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT--GFADRIDLLKSGFVDITDY 918 L ++ + + E + + ++ I L G DR+D K + I DY Sbjct: 779 KQLLRNDLQ-YTPFEMVAMEKEVSEEITIQTGQGPFTLRLGGTIDRMD-AKESTLRIVDY 836 Query: 919 KTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 KTG +PK ++L P Q L AA + + L YI Sbjct: 837 KTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRKQSLMVAPA----LLYIHRAAS 892 Query: 969 FKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + + ++ + L ++ + N ++PF K Sbjct: 893 ESYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIFNEKEPFT--QTEDTKKCSY 950 Query: 1022 SEYDHLA 1028 ++ + Sbjct: 951 CDFKAIC 957 >gi|72160927|ref|YP_288584.1| ATP-dependent DNA helicase [Thermobifida fusca YX] gi|71914659|gb|AAZ54561.1| putative ATP-dependent DNA helicase [Thermobifida fusca YX] Length = 1044 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 146/1056 (13%), Positives = 296/1056 (28%), Gaps = 117/1056 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ A V + +++A QELR +++ Sbjct: 42 PGTGKTTTIVEAIVDRVENRGVDP--------AHVLVLTFSRKAAQELRERITARL-RRT 92 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 P+ + + + P RLL ++ R L + D P Sbjct: 93 VREPLALTFHSYAYALIRREFQRVGDHAP------RLLSGPEQLMEVRELLKGELADGAP 146 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 P + A+ L D + ++ +D+ L W+ A FL+ + Sbjct: 147 GWPEQ-LRPMLHTRGFAEELRDFLMRVQERGLHADDVRELGRRHGREDWVAAGGFLERYT 205 Query: 193 KYWTERLVELNASSPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V + + L + + + + + + + PA L+ +A Sbjct: 206 GRFDIAPVPTFNYAELVRVAANLLNDPDIQARERAARKVVFVDEYQDTDPAQEELLHALA 265 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +V+ D + ++ T + L R Sbjct: 266 GDGRDLVVV--GDPDQSIYGFRGAEVRNILNFPDRFRTPTGDPAPVVA----LHTCRRSG 319 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 L VS + R + + N +P ++ A++ E Sbjct: 320 AELLRVSRALAQRLPAV-------PGPGGEGVNAHRNLVPAEGTPPGRARMLLAESPVHE 372 Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 A IA LR + + + + L+ + ++ L + + + PL++ Sbjct: 373 AAVIADLLRRAHLIDGVPWSRMAVLVRSVTRHVPVLRRALIAADVPVTVDGDDLPLASEP 432 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + LL F A A L R AL + L Sbjct: 433 LVRSMLLLLRCAFHPERLDEEAAHNLLTSAFGEADALGLRRLGRALRQLELDAGGRRP-- 490 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 A H P + E + A + + + + Sbjct: 491 ---------AAALLAEILHDPRDLVMVDPEVRAPAERIATLLRLVRDSIAEGANAEEVLW 541 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S + Q L ++ + + GS Sbjct: 542 RMWHHSGLADTLLRASQAGGRHGAAADRELDSVMALFERAARYCDRLPPGSPEGF----L 597 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 D+ + I G+T+ + + T+ IL S+ L +D +++ G+ EG WP + L Sbjct: 598 EDLEAQEIPGDTLAEQAPQGETVRILTAHRSKGLEWDLVVVAGVQEGTWPDLRLRGSLLG 657 Query: 666 RVMQSDLNLKTAE---------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 D AE + + + R + ++ ++ SR+L Sbjct: 658 VEQLLDTVGGFAETSPAAVVSKQLDEERRLFYVALTRARRELVVTAVGGEDVEERPSRFL 717 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------------------- 757 L G R L T PH P Sbjct: 718 TELG--LGEPERLATGYRWLSLPALVADLRATLLDPHTDEPVRRAAAAHLARLADAGVRG 775 Query: 758 --------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 LE + S S++++ + Sbjct: 776 ADPAEWYALTELSDSSPLVLEGEQIRISPSQVEKFTTCELRWLLETAAGAEKRRA----- 830 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + G++ H + N + PE+ M QI + R ++ Sbjct: 831 -ASGIGSIVHALARI---AAENPDLPELLRRMDQIWSD-LDFGGPWYAEKQ--RERAEEM 883 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 FL+ +++ + E + ++ + I ++G DR++ G I D KTG Sbjct: 884 LQRFLDWQKE--NPRELVATEKKFRVEV--GNIEISGQVDRLERDAEGRGVIVDIKTGTA 939 Query: 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + PQL + AL +F + +++ + + A Sbjct: 940 VPDREISRH--PQLGVYQLALLMAAFEHYGLVEPGGAALLQIGDRKTAKEQ---TQPALA 994 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 D+ + + L++ V G + F + S + Sbjct: 995 DDADPEWPQRLVQKVAAGMAGAR-FRAKATPSCRHC 1029 >gi|307565977|ref|ZP_07628435.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345165|gb|EFN90544.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 962 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 134/1074 (12%), Positives = 286/1074 (26%), Gaps = 213/1074 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL LA V + P KRA L E + P Sbjct: 4 FLSYVAEDLLRKY-----------QDNLAHVAVVFPNKRAALFLNQEIAQRADG-PVWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 ++ ++ + + L+ +I E W L D+ Sbjct: 52 NYITISELFRTQSDLIIADPIKSICILHKVYMDITHKAEPLDQFYGWGELLLADFDDIDK 111 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---------KNEKYGMWWLL 183 L+ + K L + + E + L + + Sbjct: 112 N--LAPTEKLLGLLSANKELESL------DYLTPEQISELKKVFTNISVDEDSLRRRFQE 163 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 L + RL L + ++ E L + G Sbjct: 164 FWSKLFDIYTEYKRRLRALGLAYEGMLYRDVIEKERFSL---PYKKYVFVGFNVLQKVEQ 220 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L + A D + L Sbjct: 221 ELF---YKLKDKAAFYWDYDNYY---------------------------------LSKG 244 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 ++R + +++ N D++ I Sbjct: 245 REAGRYIQRWLEMFP---------------------NELPHYNHEVFNNLDAPKDISFIA 283 Query: 364 ADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 + E +A I L+ + + +K+A++ D +L + V + ++++ G PL Sbjct: 284 SPTENMQARYITTWLKENSRYKDGRKTAIVLCDESLLQTVIHCVPTEVEELNVTTGYPLR 343 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 +L +S + L+ + M Sbjct: 344 QSLIASFIAQLIRLQVEGYSLME------------------------------------- 366 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 R+ P+ + S ++ LA + D + + + Sbjct: 367 ---------EKFRLRYATRVLRHPYAKYVWSNAEELLAKMNADRQFYVL--WEGIEYCPH 415 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC---IK 599 L+ W + E LS L + + Sbjct: 416 DAQNMLAFVKWLAQITKVVGINGASEGDPFFQESVFRMYTLLSRLIELMTAEEDGSYYLD 475 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + I + + T+L++ +V E + + I+G LE+R L+F+ +++ NEG PK Sbjct: 476 RDIIIFRRLFTQLVNATSVPFHGEPAKGVQIMGVLETRNLDFEHVLILSCNEGNMPKGVD 535 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717 F+ ++ L T + ++ F + + + T SR++ Sbjct: 536 DASFIPHAIRHAFELTTVNNKVSIFSYYFHRLIQRAGDVTILYNNSTQGVKTGEMSRFML 595 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 +L+V + + Y + + ++ + +S + I Sbjct: 596 QLMVE-----WSKPSCLVRRYTLKAGQQQHKISIEPVQKDERVMEKLVHIPKFSPTAINT 650 Query: 778 LINDPYAVYARRILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKR---INKNTPEINH 833 I P + + ++ ++ +D D G +FH + +I Sbjct: 651 FITCPVKFFYKYVVGIEEQNVVDEDSIDNRIFGNIFHKAAELMYNDIFCAKELTKADIEK 710 Query: 834 LMKQ--IIDSHFEKENLPP----------------HIDIIWRHLFHKISHSFLEHEEKIQ 875 ++ + ++DS E+ + I+ + + K L + + Sbjct: 711 VILKPNVLDSVIEEAIALELFNKKDFKKGSKLNLNGLQILNKEVVKKYLVRLLRLDYDVA 770 Query: 876 SSIEKIF---VNIPAKMAIESIGI--HLTGFADRIDL----LKSG----FVDITDYKTGD 922 V ++++ + G DR+D+ L+ + + DYKTG Sbjct: 771 PIRVIAHEFDVEDEVEISLMGKPYKKRIGGRVDRLDVATYMLEKNTMIRRMRVVDYKTGR 830 Query: 923 --NPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKVA----------- 958 + Q L + Q Sbjct: 831 KEAKPMADVPSIFSADNIKNKSDYVMQAMLYGLLIADNKVKQAPKTSPELFNKEHRPVAP 890 Query: 959 NLFYIRLKQKFKIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 L +I+ K I + ++ + ++ + L ++ L + EQPF Sbjct: 891 ALLFIQKTNKKAYSPIVVIDKQEVIDVAKYRDEFMSELKAVLERLYDKEQPFTP 944 >gi|325860083|ref|ZP_08173209.1| hypothetical protein HMPREF9303_1087 [Prevotella denticola CRIS 18C-A] gi|325482368|gb|EGC85375.1| hypothetical protein HMPREF9303_1087 [Prevotella denticola CRIS 18C-A] Length = 957 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 137/1089 (12%), Positives = 305/1089 (28%), Gaps = 213/1089 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + ++ V + P KRA L P Sbjct: 3 FLEYVAQDLLKKYGTD-----------MSDVAVVFPNKRASLFLNQALAR-MAGHPLWSP 50 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D + + ++ L + + Sbjct: 51 AYVTISDFFRQHSGLTVADPIK------------SISDLYKTYVEVTGN----------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLK 189 + + + L D I+ +L L + Y A L Sbjct: 88 -VGETLDQFYGWGQLLLADFDDIDKNLADARLIFSNISNLRELDDISYLNDEQKA--ELH 144 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + ++ P G + + + + + Sbjct: 145 RFFANFDDK--------PEGIRERFI--------------TLWDRLNDIYNRFREKLRSQ 182 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G + + + Q ++ + + Sbjct: 183 ELAYEGMLYRDVAEQADIQTRYQH----------YAFVGFNVLQKVEQRVFKRFKEEEKA 232 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 M GR+ + + +++ + +++ + A E Sbjct: 233 DFYWDYDRYYM-GRTNEAGNYIRQWLDTFPNSLPNDNDELYDNLGKEKEISFVSAPTENL 291 Query: 370 EAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A I LR + +A++ D +L + V + ++I+ G PL T +S Sbjct: 292 QARYITEWLRKDGRYKDGTHTAIVLCDEHLLQTVIHCIPSEVETLNITTGYPLQQTPIAS 351 Query: 429 ILTSL-------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++T L + + ++ +++HP K+ P LE ++ Sbjct: 352 MVTQLLILQTEGYSVQEQGYRLHHVSRVLRHPYGKYLIPNVS-----EVLEQLSKDHRFY 406 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 A L+++ Sbjct: 407 IPP----------------------------------RAGTLLEYHPS------------ 420 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 +++DW + + + L TL + S ++ TG ++A+ Sbjct: 421 -DRQHLPALADWLTRNIRLIGVNGAADKDPLFE-ESVFRMFTLLTRLSDLM-TGGDLEAD 477 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + + ++T+L+ ++ E + + ++G LE+R L+FD +++ NEG PK + Sbjct: 478 KVVFRRLLTQLVSSTSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGVDDS 537 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRL 719 F+ +++ +L T + + ++ F + + + + T SR++ +L Sbjct: 538 SFIPHLIRKAYDLTTVDNKVSIYSYYFYSLIQRAKDITFLYNNSTQGSRTGEMSRFMLQL 597 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 +V + GQ + + + + + +S + I I Sbjct: 598 MVEWNHPIHRMTLQAGQVPMR--------CEAKAVTKDEAVLNKLDEISYFSPTAINTYI 649 Query: 780 NDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINKN----------- 827 + Y + I +++ D D G +FH+ + K + K Sbjct: 650 SCHLKYYFKYIAEINEKEETDIDDVDNRMFGNIFHSAAQLMYGKLLPKEVITDKNIDYVL 709 Query: 828 ----------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHS 866 I M ++D F E + +I R + K + Sbjct: 710 KTGKSAQPFTADGIKSTMDDVVDEAFATELFHQQPGSRRHPRLNGLQLINREVIKKYLYQ 769 Query: 867 FLEHEEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDL----LKSGFVDIT 916 L + + + I + + I G I G DR+D + + + Sbjct: 770 LLRIDR-RTAPLRVIGHEFNVKRTLLINVNGTEKQIETGGRIDRLDEVLVGTEKARLRVV 828 Query: 917 DYKTG--DNPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCRKV--ANLF 961 DYKTG + + + DP Q L + + L Sbjct: 829 DYKTGSKTAEPLKNVEAVFDPKNIEKKSDYTMQAMLYSLIESRYDILHNPGHRPVSPALL 888 Query: 962 YIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 +I+ I + ++ + L+ L E + + N + PF L + Sbjct: 889 FIQHSGGEDYTPVIIMDGEEMTDVTLYEKDFLRKLTETLEEIHNPDVPFAPTDDL--ERC 946 Query: 1020 IQSEYDHLA 1028 Y + Sbjct: 947 RYCPYRQMC 955 >gi|319902332|ref|YP_004162060.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108] gi|319417363|gb|ADV44474.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108] Length = 989 Score = 271 bits (691), Expect = 6e-70, Method: Composition-based stats. Identities = 144/1085 (13%), Positives = 295/1085 (27%), Gaps = 170/1085 (15%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 +PF + + L + L+ I P KRA + + Sbjct: 2 TPFLQLVAHDLHSKIG-----------DDLSRTAIVFPNKRASLFFNEYLAAES-TRPLW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSY----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P S+ ++ L R E W L D Sbjct: 50 SPAYVSISELFRRLSPLKQGDPIRLTCELYKVFRQETRSEETLDDFYFWGELLISDFDDA 109 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEE-KKWEDLHAL----------KNEKYGM 179 + +A L NL D+ DI++ ++ E A+ K + Sbjct: 110 DK--------NLVDAARLFANLRDLKDIMDDQDFLDPEQEEAIRQFFLNFSIEKRTELKA 161 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 ++ D L + E L L + ++ + + G Sbjct: 162 RFISLWDKLGDIYHRYRENLTRLGIAYEGMLYRNVIEQLDT--DQLRYDRYVFVGFNVLN 219 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS-----NTTYSTHPQY 294 + + A+ D + + P+ Sbjct: 220 KVETHFFLRLQDAGK-AMFYWDYDTFYTRMPHQQTPPYNHEAGEFILRNLKLFPNQLPET 278 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + + + + + + D ++ + Sbjct: 279 AFDTLRLPKQVTFISAPTENAQARHLPQWIRETTGTQRAEEATSRERKDGTDDTLRTKAA 338 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 + +K++A++ + +L V + N++ Sbjct: 339 ANDGIT------------------------KEKENAVVLCNESLLLPVLHSIPPTVKNVN 374 Query: 415 ISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 I+ G PL T S + SL+ + A+ ++KHP + P Sbjct: 375 ITMGFPLVQTPVYSFINSLMELQTTGYRSDTGRYTYEAVLAVLKHPYTRLLSP------L 428 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 LE + N+ +L+ + + Sbjct: 429 AETLERQLTQNNRFYPLPSELRQ------------------------------DTFLTRV 458 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + + ++TV + D+ + T+++ Sbjct: 459 FTPQSSISALCLYLTDL--------LREVTVIYRRKDDSDDIFNQLYRESLFKSYTIANR 510 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 +IET ++ RL+ + E + + ++G LE+R L+F LI+ Sbjct: 511 LLNLIETEELNGLRTDTLKRLLGRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLIIL 570 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSL-RE 705 LNEG PK + F+ ++ + T E A+ F ++ S + Sbjct: 571 SLNEGQLPKAGGEASFIPYNLRRAFGMTTIEHKNAVYAYYFYRLVQRAENITLLYSTASD 630 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 SR++ + L+ D + GQ T + + + + Sbjct: 631 GMNRGEMSRFMLQFLIESPHDISLRYLEAGQSPQSTREIRIDKTPEILERMYRTYDIRRN 690 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 +S S + ++ Y R I +L + D GT+FH + Sbjct: 691 SKALFSPSALNAYLDCRLKFYYRYIAQLKAPNEVSAEIDSALFGTIFHYSAQLAYEALTT 750 Query: 826 KNTPEINHLMKQII----------DSHFEKENLPP---------HIDIIWRHLFHKISHS 866 ++ ++ D+ F+KE +I + Sbjct: 751 HGKEIRKEALEALLKNDTRLQSYVDNAFKKEFFHVPSTEQPEYNGTQLIHSKVIASYLRQ 810 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIG------IHLTGFADRIDLLKSGFVDITDYKT 920 L ++ + + + P IE+ + + G DR+D + I DYKT Sbjct: 811 LLRNDLQ-YAPFNMEAMEKPVDETIETDTPLGKLLLKIGGTIDRMDSKGD-TLRIVDYKT 868 Query: 921 GDNPK-KETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G PK E ++L P Q L AA + ++ L YI Sbjct: 869 GGVPKIPENIEQLFTPSTSRPNYIFQTFLYAAIMCRKQPLKVAPA----LLYIHKAASES 924 Query: 971 IDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + ++ + L ++ + + E PF + + Sbjct: 925 YSPVIEMGAPRQPKIPISNFALHEDEFRERLQTLLREIYSRETPFDQTEDTKQ--CEFCD 982 Query: 1024 YDHLA 1028 + L Sbjct: 983 FRSLC 987 >gi|163754617|ref|ZP_02161739.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1] gi|161325558|gb|EDP96885.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1] Length = 921 Score = 271 bits (691), Expect = 6e-70, Method: Composition-based stats. Identities = 150/1019 (14%), Positives = 322/1019 (31%), Gaps = 173/1019 (16%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 ++++T+ +P+KRA L+ E + K++ P I S+ ++VEE + + L Sbjct: 19 ISNLTLVLPSKRAGVFLKHELSQQIQ-KTSFAPNILSIEELVEEISGYTSVSNTEL---- 73 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L +++ P ++ + A+ L + I+ Sbjct: 74 --------LFEFYTVYKELTPKDAQE-----------PFDSFSKWAQILLQDFNEIDRYL 114 Query: 164 KKWEDL-HALKNEKYGMWWL----------LAADF---LKIASKYWTERLVELNASSPVG 209 +D+ + L + W F L+ T R+ + + Sbjct: 115 ISHKDIFNYLSAIQRIQQWSPDKEPSDLMNNYLKFWDKLEHYYGALTNRITQKGIAYQGL 174 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + + +L K G A +++ L+ + Sbjct: 175 VYREAVDSLEFYLQKNEDKKHYFIGFNALNTAEEKIIQEF------------LEVGLAEI 222 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 +W+ ++ + P++ + L + ++ Sbjct: 223 LWD-----------TDHVFFDDPEHDASLFLRRHRYEWNYFQKHDFSW------------ 259 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKK 387 + N ++ +I +A I L DE + Sbjct: 260 -------------------VANNFSSKKNIDIIGIPKNVTQAKYIGEILQTLQKQDETLQ 300 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 A++ D L L + ++I+ G PL ++ Sbjct: 301 DVAVVLGDEQLLIPCLNSLPQEIERLNITMGFPLKDIPLAT------------------- 341 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F Y+ + + + + N +L+ L + Sbjct: 342 ----------TFNNLYILQEHHRNDTFYYKNIINVLSDTNLRPLFQQEDKNLAADIIEYI 391 Query: 508 WQSRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + E+ H+ L TY +K +I + L + Sbjct: 392 QTNNIIYVSTEVIVARFPKHVQDIAEMLFTYWNDKPKL----AIQNCVTLIRRLKTKLIE 447 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 D + L L + + + + + + + + +I ET+ K E Sbjct: 448 DREQHLLALEYLYRFNEVFNQLQHLTKQ-HNYITDIKSLLALYKEIISTETLDFKGEPLQ 506 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAA 685 L ++G LE+R+L+F T+IL +NEG+ P + N F+ ++ NL T EK Sbjct: 507 GLQLMGMLETRVLDFKTVILSSVNEGILPSGKSNNSFIPFDLKKQFNLPTYKEKDAIYTY 566 Query: 686 HDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 H + + + ++ + + SR+L +L + T + Sbjct: 567 HFYRLLHRAENVYLLYNTEADGLNGGERSRFLMQLETYNMPNHTLTQNVVIPTVPKITHQ 626 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + K + + + +S S + I +P Y ++IL ++ ++ Sbjct: 627 MQEVQK----EASMQKRMKDIANKGFSPSALTSYIRNPIDFYYQKILGINEYEAVEETVA 682 Query: 805 RTDRGTLFHNIITELIKKRINK--NTPEINHLMKQI-------IDSHFEKENLPPHIDII 855 GT+ H+ + L K K T +I + K + + + N+ ++I Sbjct: 683 ANTLGTVVHDTLELLYKPFEGKIIATEDIKAMFKNVEPLVVENFKKTYGEGNIHRGKNLI 742 Query: 856 WRHLFHKISHSFLEHEEKIQSSI---EKIFVNI--PAKMAIESIGIH--LTGFADRIDLL 908 ++ + +FL+ E + S + + AK+ I + + G DR+D L Sbjct: 743 IFNVAKRYVTNFLQQELQTLKSGKTLRILQIEQTLKAKVDIPELDFPVYIGGKVDRVDEL 802 Query: 909 KSGFVDITDYKTGDNPKKETAQK------------LIDPQLSLEAAAL-KAGSFSQIDCR 955 G + I DYKTG + + Q+ A + + +F Q Sbjct: 803 -DGVMRIIDYKTGKV-SQGDVEIVDWDLLTQDYKFSKSFQVLAYAYMIYQKQAFQQ--ET 858 Query: 956 KVANLFYIRLKQKF-----KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + + + L+ F K + +K + E + + L +++ + N E PF Sbjct: 859 EAGIISFKNLQSGFLKFGTKDSARSRNKNQLITAETLDDFVVELKQLILEICNMEIPFT 917 >gi|271969569|ref|YP_003343765.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium roseum DSM 43021] gi|270512744|gb|ACZ91022.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium roseum DSM 43021] Length = 1051 Score = 270 bits (690), Expect = 8e-70, Method: Composition-based stats. Identities = 125/1035 (12%), Positives = 275/1035 (26%), Gaps = 110/1035 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 + T+V+ ++P V + +++A +ELR I +++T P+ + Sbjct: 31 IVETVVDRIERRGVDPE---RVLVLTFSRKAAEELRER-ITGRMRRTTRTPLALTFHSYA 86 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + +L+ + P RLL +L R L ++D P P Sbjct: 87 YALLRREAVLAGGVPP------RLLTGPEQLLEVRRLLHGELEDGAPHWP-DDMREALKT 139 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE--LN 203 A+ L D + ++L L W+ A F + + Sbjct: 140 RGFAQELRDFLSRAAERGLDGDELVELGRLHGRADWVAAGRFADRYQSRFDLDMEPVLDY 199 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + L E + +++ + PA L+ +A G ++ D Sbjct: 200 SDLIRTAAGLLADPEVRLRERAAYDVVLVDEYQDTDPAQEFLLQQLAG--EGRDLIAVGD 257 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + + + L + R L S + R Sbjct: 258 PDQSIYGFRGADVRGIMRFPESFPGAD----GENAPVIALRVCRRSGSELLRASRRVAAR 313 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + DV ++ D +EA +A LR + Sbjct: 314 ------------LPATPGGAAHRDLRALPDAEPGDVRVLVTDGATQEAAVVADTLRRAHL 361 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-----PLSTTLHSSILTSLLNAIF 438 + + + A R L R + + + PL L L+ Sbjct: 362 LDGVPWSRMAVLVRSATRQVPLLRRALVTAGVPVVVGGGELPLFQEPGVRPLIRLIQVAL 421 Query: 439 KLNDFMAIAT--LVKHPLAKFGF---PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L+ L + E + ++ D + + Sbjct: 422 HPETLDEAMAEELLTGALGGTDMVGVRRLRRALRIAEHEAMTHPDERDMVDHSGERDVAG 481 Query: 494 DRI--ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 R R+ A L + + T ++ + Sbjct: 482 PRSSGELLVAALKDVRELVRVEPHVALPAERLAKLVSGAAEAVRQGGTAEDVLWTVWQAT 541 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + +L ++ F + + D++ + Sbjct: 542 GLAEKWTGVSVSGGFRGTMADRDLDAVVALFDHAARFVDRLPHAGVE----VFVDDLVAQ 597 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 I G+++ + + ++ IL S+ L +D +++ G+ EG WP + LS Sbjct: 598 EIPGDSLADRAPDTDSVRILTAHRSKGLEWDVVVVAGVQEGAWPDLRLRGSILSTDDMVA 657 Query: 672 LNLKTAEKY-------------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + + + + A R + ++ + SR+L Sbjct: 658 RAEGSEHENPAAVSAALASQLLAEERRLFYVAATRARTRLIVTAVGGEDSEERPSRFLTE 717 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------------- 756 L+ + + + R L P Sbjct: 718 LVPGAAEETAVDERSRWLSMSALVADLRSAVSDPTRPASLRRAAAEHLARLAAEGVSGAH 777 Query: 757 -----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ + Sbjct: 778 PNEWYALTPISDDRPLSWPDDVVRISPSAVENFTKCGLRWLLETSVGASGTDA------A 831 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 GT+ H + + + + I + + + R + ++ Sbjct: 832 RGLGTVIHALA---VLAATGMPSEDTLGKRLDEIWHELDFGGVWYNRKQ--RKVAEQMIS 886 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924 F+ + + E + + + S G+ + G DR++ G I D KTG N P Sbjct: 887 KFVRWHQD--NPRELVGLEEAFTAMV-SEGVQIKGRVDRVERDAEGRAVIIDIKTGKNGP 943 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 K ++ PQL + A G+F + + +++ + A+ Sbjct: 944 KDAEIERH--PQLGVYQLAALLGAFQRHGMTEPGGAALVQVGDAAGKKDAKEQAQPPLAE 1001 Query: 985 ELSEKSLKNLIEIVT 999 + +++++ V Sbjct: 1002 DADPGWARDMVDTVA 1016 >gi|260642335|ref|ZP_05415442.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] gi|260622483|gb|EEX45354.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] Length = 957 Score = 270 bits (689), Expect = 1e-69, Method: Composition-based stats. Identities = 140/1072 (13%), Positives = 306/1072 (28%), Gaps = 176/1072 (16%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 PF + + L + L+ + P KRA E + + Sbjct: 2 QPFLQLVAHDLYTKIGND-----------LSRTVLVFPNKRANLFFNEYLAEESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P S+ D++++ L + L +++ + Sbjct: 50 SPAAMSISDLLQKLSVQKAGDPIRL------------VCELYKVFKEET----------- 86 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 + + + + L D ++ + L + LK Sbjct: 87 --ESRETLDDFYFWGELLISDFDDVDKNMVDADKLFS------------NLQDLKNLMDD 132 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI-PATARLMSTVANHP 253 + E L E + E + + I + G I ++ + Sbjct: 133 Y-EFLDEEQ---EEAIRQFFQNFSIERRTELKEKFISLWDKLGIIYHRYREKLAELGIAY 188 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 G + ++ + + L + + Sbjct: 189 EGMLYRNVIEQ---------LDTDRLKYDKYVFVGFNVLNKVEKEFFQKLQKAGKAMFYW 239 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 S + F+ + D + L +I + + I A E +A Sbjct: 240 DYDLFYTQRISKHEAGEFIKRNLID--FPNELPESYFDIFRKPKKIRYISASTENAQARF 297 Query: 374 IAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + ++ + + A++ + L V + + N++I+ G PL+ T S Sbjct: 298 LPEWVKATQTHTTQIVSEKENAIVLCNEALLLPVLHSIPQDVQNVNITMGFPLAQTPVYS 357 Query: 429 ILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + + + + A++ ++KHP + LE + N+ Sbjct: 358 FINAAMELQTNGYRPDTGRFTYEAVSKILKHPYTRQLSD------HATRLERELTKTNRF 411 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 +LK + + L D++L+ I + + Sbjct: 412 YPLPSELKK----------------DDFLTILFTPQSNIRELCDYLLRLIKSISILYRKE 455 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKA 600 L+ E ++ + + Sbjct: 456 GEY------------------------DDIFNQLYRESIFQSHLKINRLYSLIESGELSV 491 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +IT+++ + E + L I+G LE+R L+F LI+ LNEG PK + Sbjct: 492 RTDTLKRLITKVLTASNIPFHGEPAIGLQIMGVLETRNLDFRNLIMLSLNEGQLPKAGGE 551 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQR 718 + F+ ++ + T E A+ F ++ + + SR++ + Sbjct: 552 SSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQ 611 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 LLV G + + GQ + T + + + + + + S S + Sbjct: 612 LLVEGPHEITREYLEAGQSPQNTLEIQIEKTPEILRRLYRAYDTAQPESVILSPSALNTY 671 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----PEINHL 834 ++ Y R + L + D GT+FH ++ L Sbjct: 672 LDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLSAQLAYTDLTANGKMIQREDLERL 731 Query: 835 MKQI------IDSHFEKENLPPH---------IDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ +D F++E + +I + L ++ + + E Sbjct: 732 LRDEIKLQGYVDQAFKQELFKVAPEEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YTPFE 790 Query: 880 KIFVNIPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKL 932 + + A+ + + L G DR+D K G + I DYKTG +PK ++L Sbjct: 791 MVAMEKKVSEKITIQTALGPLTLRLGGTIDRMD-AKEGTLRIVDYKTGGSPKIPANIEQL 849 Query: 933 IDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 P Q L AA + + L YI + + Sbjct: 850 FTPSETRPNYIFQTFLYAAIMSRKQPLMVAPA----LLYIHRAASESYSPVIEMGEPRKP 905 Query: 984 DELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ + L ++ + + ++ F + K ++ + Sbjct: 906 KIPVNNFAFFEDEFRERLQALLEEIFDEKELFTQTEDI--KKCAYCDFKAIC 955 >gi|302346509|ref|YP_003814807.1| hypothetical protein HMPREF0659_A6763 [Prevotella melaninogenica ATCC 25845] gi|302150929|gb|ADK97190.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 958 Score = 270 bits (689), Expect = 1e-69, Method: Composition-based stats. Identities = 139/1092 (12%), Positives = 289/1092 (26%), Gaps = 219/1092 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + +A + + P KRA L + P Sbjct: 4 FLEHVAADLLKKYGND-----------MAHIAVVFPNKRAALFLNQALARLADG-PVWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131 ++ D + + +L + E W L D+ Sbjct: 52 AYITISDFFRQHSELTIADPIKSICDLYKSYIEVTGNTNETLDHFYGWGQLLLADFDDID 111 Query: 132 PESP--------LSLPISPANAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGM 179 +S + +L L + E + E++ Sbjct: 112 KNMANAEMVFSNISNLKELDDISYLTDEQKVELRRFF---ANFDDDPEGI----RERFIT 164 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 W L + +RL + ++ + ++ + G Sbjct: 165 LWNK----LNDIYNDFKQRLKSQKLAYEGMLYRDVVE---KTKIEAQYECYVFVGFNVLQ 217 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 Q + Sbjct: 218 KVE--------------------------------------------------QLLFKRF 227 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L + M + + D + + N+ K D+ Sbjct: 228 LK----EERASFYWDYDRYYMKPTNEAGNYIRCWLDKFPNALPNDSDELYDNLGK-EKDI 282 Query: 360 ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAG 418 +I A E +A I LR + + K++A++ D +L + V + ++++ G Sbjct: 283 NIISAPTENLQARYITEWLRENERYKDGKRTAIVLCDEHLLQTVIHCIPDEVETLNVTTG 342 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 PL T +S++T L + ++ R Sbjct: 343 YPLQQTPIASMVTQLWALQTEGYSVQE----------------------QSYRLHYVNRV 380 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 ++ Y + + E Sbjct: 381 LRHPYGKYLTPKVAEIIERLNSERQFYVKPKEGSIFEYHPS------------------- 421 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + +W T+ + + L L+ L +I + Sbjct: 422 ----DKQNLQVLVNWLAETIRFIGVNGAADKDPLFEESVFRMYTLLTRLSDLMIN--GDL 475 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A+ I + ++T+LI ++ E + + ++G LE+R L+FD +++ NEG PK Sbjct: 476 DADKIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGI 535 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWL 716 F+ +++ L T + + ++ F + + + + T SR++ Sbjct: 536 DDASFIPHLIRKAYELTTIDNKVSIYSYYFHSLIQRAKDVTFLYNNSTQGSHTGEMSRFI 595 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 +L+V + GQ + + ++ + + +S + I Sbjct: 596 LQLMVEWNHPIHRLTLQAGQEPMH--------CEAEVVEKNEAVLNRLDEISYFSPTAIN 647 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKN-------- 827 I Y + I ++ + D G +FH + +K + + Sbjct: 648 TYITCQLKYYFKYIAGINELDEVDVDDVDNRMFGNIFHTAAQLMYEKLLPREVITAKNID 707 Query: 828 -------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKI 863 + + I+D F E + +I R + K Sbjct: 708 YLLKTGKSTQSLTSGNAELTLDDIVDEAFATELFHQQRGVKKHPKLNGLQLINREVIIKY 767 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID---LLKS-GFV 913 H L + + + I P + I G I G DR+D + + Sbjct: 768 LHQLLRIDR-RSAPLRVIGHEFPVKRSLTINVNGLEKQIETGGRIDRLDEILVDSDSARL 826 Query: 914 DITDYKTG--DNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKV--A 958 + DYKTG ++ ++ D Q L + + Sbjct: 827 RVVDYKTGGKAAESLKSVDEMFDSKNLSKKSDYTMQAMLYSLIEAKNDSEHNPNHRAVSP 886 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 L +I+ + + K+ D E L+NL E + + N F + Sbjct: 887 ALLFIQHAGSEDYTPVLSIDKEEVTDVTVYEEDFLRNLTEKLEEIHNPNIAFA--PTDNT 944 Query: 1017 KSNIQSEYDHLA 1028 S Y + Sbjct: 945 DSCQYCPYKQMC 956 >gi|261879279|ref|ZP_06005706.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334110|gb|EFA44896.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 987 Score = 269 bits (687), Expect = 2e-69, Method: Composition-based stats. Identities = 141/1103 (12%), Positives = 307/1103 (27%), Gaps = 213/1103 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + +L P L+ V I P KRA L E + P Sbjct: 5 FLQHVAKDILAKH-----------PEGLSDVAIVFPNKRASLFLNQALYEE-AGRPLWSP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + + ++L + +L + + + S Sbjct: 53 AYITISDLFRQHSEWSVPD------------QILLVFKLYNTFCHVTGSDEPLDHFYSWG 100 Query: 137 SLPI--------SPANAIWLAKNL--------ADIIDIIETEEKKWEDLHALKNEKYGMW 180 L + + A+A L NL + + E + N + Sbjct: 101 QLLLADFDDLDKNMADADKLFINLEAWQEMKDFSFLSEAQRESLENFFGKMFDNTEMQRR 160 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 + L + + L + Sbjct: 161 FNDTWRHLAEIYHCFRQELQTEKMAY---------------------------------- 186 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 L VA Q +L Sbjct: 187 -EGMLYRQVAETK----------------------HIEFRYKHYIFIGFNLLQKVEQQLF 223 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKS--FLPPDTSDMRNTDILENKIPNI----QK 354 L + ++ S +L +++ T I + + Sbjct: 224 RRLKAEGRAEFYWDYDKYYIHNNSEAGKYISGYLDKFPNELSPTRISGDLSHDAVYDNMS 283 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINI 413 DV I A E +A ++ L+ ++ ++A++ + +L V L N+ Sbjct: 284 APKDVTYISAPTENIQARYVSEWLKQGDRIKDGSRTAIVLGNESLLETVIHCLPEEVDNV 343 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKL-------NDFMAIATLVKHPLAKFGFPEKYLSR 466 +I+ G PL+++ S+++ LLN + I +++HP AK+ + + Sbjct: 344 NITTGYPLASSPVSTLVNVLLNLQLRGRVENTDKYRLKYINQVLRHPYAKYISDD--CAL 401 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 N L + + + D A K + S Sbjct: 402 LLNELNTHKHYFPTRTLLTGEYDEAMADLFADVKEDNGKLPVLSW--------------- 446 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 I ++ + N + + T + + + Sbjct: 447 ----IAGILKRIGVGSREEKNPLMHESVFRMYTLINRLDDIMIATT---------ENAGL 493 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + I E + ++T++I T+ E + ++G LE+R L+FD ++L Sbjct: 494 SYGNIDEESGRQIVSVAILQRLLTQVIQSTTIPFHGEPLLGIQVMGVLETRNLDFDHVLL 553 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRE 705 NEG PK+ F+ +++ L T E + A+ F + T + Sbjct: 554 LSCNEGNLPKSVNDASFIPHSLRAGYELTTVENKVAIYAYYFYSLLQRAEDITLTYNNST 613 Query: 706 NNIPT-IASRWLQR--LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 + SR++ + + + GQ R+ ++ Sbjct: 614 DEGQRGEMSRFMLQFMVENADRQHISFKTLQSGQSVTLIRRR--------PIEKNAIIRQ 665 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-PHFKKDPDRTDRGTLFHNIITELIK 821 S S I + + Y + L + + D G +FH Sbjct: 666 QLDSIDRLSPSAINRYLRCQLQFYYNTVCHLREESNDDEDEIDNVTFGNIFHRSAELTYL 725 Query: 822 KRIN---------------KNTPEINHLMKQIIDSHF------EKENLPPHIDIIWRHLF 860 K+ ++ + Q + + + + Sbjct: 726 DLSAHYTKPVTSGGIDTFLKDKSILDRHIDQAFREILFKVNDSRFSPQYNGLQRLNKKVV 785 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPA----KMAIES--IGIHLTGFADRIDLLK-SGF- 912 L ++++ + + + ++ + + G DR+D ++ G Sbjct: 786 RLYLERLLTLDKQLTP-FDILTLEGSFYDNLTFEVQGKQRTLRVGGQIDRLDRIQMDGQP 844 Query: 913 -VDITDYKTGDNPK--KETAQKLIDPQ----------L--SLEAAALKAG--SFSQIDCR 955 + + DYKTG T + + +PQ L L A ++ G + ++ Sbjct: 845 VIRVVDYKTGRPLSSLPSTVEDIFEPQYIDTKHTAYYLQAFLYAGIIRHGKEARKSVNPE 904 Query: 956 KV---ANLFYIRLKQKFKIDCIT-------NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 ++ LF+IR + + + D ++ ++ L ++ + + + Sbjct: 905 QLPVSPALFFIRQTASDNYNPTLSFSVGRGKREMIHDIDTRYDEFIQALQNLMGSIFDPD 964 Query: 1006 QPFISHLRLSEKSNIQSEYDHLA 1028 Q F+ I Y ++ Sbjct: 965 QSFL--PTEDGTRCISCPYKNIC 985 >gi|311746369|ref|ZP_07720154.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1] gi|126575254|gb|EAZ79586.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1] Length = 954 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 129/1061 (12%), Positives = 289/1061 (27%), Gaps = 161/1061 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F R +L+ + L +T+ +P +RA + + T +P Sbjct: 4 FLRNTAKEILDSGV------------DLQKLTVVLPNRRAGLFFTQHLGSLI-TEPTWMP 50 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR-NKLPDIIKDLYPESP 135 +K++ ++ + L + EL R+ + + E Sbjct: 51 EVKTIEEIFYDLAGNRPADDLTL---------IFELFRVYQELNPDAETFDRFYFWGEMI 101 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L + A L + I+ E DL L + + ++ ++W Sbjct: 102 LKDFNDVDQFMANASKLYHHLSEIKELE---SDLSFLNDSQV-----------ELIKQFW 147 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + + + + + A S A + ++ Sbjct: 148 SSFERQ--------DRDHQEKFLKFWQLLNPLYTSFQASLAVSGLAYSGMLYR------- 192 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + ++ + + + L+ + Sbjct: 193 -------------KVVESLDTITRPEKTHYFIGFNAFTGTEEVLIKHYLTDFDAKIFWDI 239 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + R F + + +I+ + + + +A + Sbjct: 240 DTYYLEDRVQEAGLFFRDYQKDKVFGPTFPKETPSHIEDRKASIKTYATPLKTNQANLVG 299 Query: 376 IAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 L + + ++ ++ D + V L ++++ G P+ S L ++ Sbjct: 300 SILDKIPAGERWEETVVIL-PDEQMLFPVLHTLPEQVDKVNVTMGYPVKNAPVYSFLEAV 358 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L L+ F + L+ + D M L L Sbjct: 359 LEMQ--RFIKEEDGKLL------FYHTAVKNLLSSIYLKNEQPGFAEELMDEMQL----L 406 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 ++I + H + + + N S+ + Sbjct: 407 NQIHVSADKLHKGGKLYHMIFQKLD----------------------------NQSLFPY 438 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L +E + L+ + +I + N +I + ++ Sbjct: 439 LAELMEALAERLEEEPLQRSYLYQC---FKQLTRLREIFAGQDTLSINREFFIRLFRQIF 495 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + + E L I+G LESR L+F +I+ +NE +P N + ++ Sbjct: 496 REVKLPFEGEPLQGLQIMGVLESRNLDFKRVIICNMNEDSFPPAAGLNSMIPFNIRKAFG 555 Query: 674 LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNL 731 L E+ A+ F + + + SR++Q++ V G + + + Sbjct: 556 LPVQEQNDSIYAYTFYRLLHSAEEVHMIYTTASDQGKAGEKSRYIQQMGVELGREIAEEV 615 Query: 732 KKRGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + + ++S S + ++ Y + + Sbjct: 616 IYIPIDQKSPEEITIQKNNEVLGLLDKYLIDEHGRSQTSFSPSALSVFLDCRLKFYLQYL 675 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---------NTPEINH-----LMK 836 + ++ D G L H + L + + + +++ ++ Sbjct: 676 ANIQEKQEVNEEIDAAVFGNLAHLSMEILYQDFAKRKGRTLLEKSDFDDLSKTWVFPAIE 735 Query: 837 QIIDS--HFEKENLPP--HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-- 890 + I H E E I R + K H L+ ++ + I + K Sbjct: 736 KAIRQFYHLEDETDTKLNGQMAIARDVLQKYLHQILKVDKDS-APFRLISLEKEKKYTAG 794 Query: 891 IESIG------IHLTGFADRIDLLKSGFVDITDYKTGD-------NPKKETAQK----LI 933 IE + L G DR+D + G V + DYK+G P Sbjct: 795 IEIETSKGKQIVSLKGIIDRVDEHQ-GSVRLIDYKSGQDNKNFPDVPSLFDRDHKSRNKA 853 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF------KIDCITNDKKKYSADELS 987 Q +A + S K A + + + Sbjct: 854 AMQTMFYGLIYQATNPSNKLPLKPAIFNLREMFSDDFNPYLQEKIPYKTGIEVDDYRNYE 913 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E+ L ++ + N + PF L K Y + Sbjct: 914 EEYSTGLKTLLGDIYNPDIPFDQTEDL--KKCAYCPYKEIC 952 >gi|288802441|ref|ZP_06407880.1| conserved hypothetical protein [Prevotella melaninogenica D18] gi|288334969|gb|EFC73405.1| conserved hypothetical protein [Prevotella melaninogenica D18] Length = 958 Score = 268 bits (684), Expect = 4e-69, Method: Composition-based stats. Identities = 138/1092 (12%), Positives = 287/1092 (26%), Gaps = 219/1092 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + +A + + P KRA L + P Sbjct: 4 FLEHVAADLLKKYGND-----------MAHIAVVFPNKRAALFLNQALARLADG-PVWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131 ++ D + + +L V E W L D+ Sbjct: 52 AYITISDFFRQHSELTIANPIKSICDLYKSYVEVTGNTNETLDHFYGWGQLLLADFDDID 111 Query: 132 PESPLS--------LPISPANAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGM 179 + + +L L ++D E++ Sbjct: 112 KNMANTEMVFSNICNLKELDDISYLTDEQKVELRRFF-------ANFDDNSEGIRERFIT 164 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 W L + +RL + ++ + ++ + G Sbjct: 165 LWNK----LNDIYNDFKQRLKSQKLAYEGMLYRDVVE---KTKIEAQYECYVFVGFNVLQ 217 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 L + + E I + +L Sbjct: 218 KVEQLLFKLFLKEEKASFYW-----DYDRYYMKSTNEAGNYIRCWLDKFPNALPNDNDEL 272 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 D L + ++ Sbjct: 273 YDNLGKE--------------------------------------------------KEI 282 Query: 360 ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAG 418 +I A E +A I LR + + K++A++ D +L + V + ++++ G Sbjct: 283 NIISAPTENLQARYITEWLRENERYKDGKRTAIVLCDEHLLQTVIHCIPDEVETLNVTTG 342 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 PL T +S++T L + ++ R Sbjct: 343 YPLQQTPIASMVTQLWALQTEGYSVQE----------------------QSYRLHYVNRV 380 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 ++ Y + + E Sbjct: 381 LRHPYGKYLTPKVAEIIERLNSERQFYVKPKEGSIFEYHPS------------------- 421 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + +W T+ + + L L+ L +I + Sbjct: 422 ----DKQNLQVLVNWLAETIRFIGVNGAADKDPLFEESVFRMYTLLTRLSDLMIN--GDL 475 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A+ I + ++T+LI ++ E + + ++G LE+R L+FD +++ NEG PK Sbjct: 476 DADKIIFRRLLTQLIAATSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGNMPKGI 535 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWL 716 F+ +++ L T + + ++ F + + + + T SR++ Sbjct: 536 DDASFIPHLIRKAYELTTIDNKVSIYSYYFHSLIQRAKDVTFLYNNSTQGSHTGEMSRFI 595 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 +L+V + GQ + + ++ + + +S + I Sbjct: 596 LQLMVEWNHPIHRLTLQAGQEPMH--------CEAEVVEKNEAVLKRLDEISYFSPTAIN 647 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKN-------- 827 I Y + I ++ + D G +FH + +K + + Sbjct: 648 TYITCQLKYYFKYIAGINELDEVDVDDVDNRMFGNIFHTAAQLMYEKLLPREVITAKNID 707 Query: 828 -------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRHLFHKI 863 + + I+D F E + +I R + K Sbjct: 708 YLLKTGKSTQSLTSGNAELTLDDIVDEAFATELFHQQRGVKKHPKLNGLQLINREVIIKY 767 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIG----IHLTGFADRID---LLKS-GFV 913 H L + + + I P + I G I G DR+D + + Sbjct: 768 LHQLLRIDR-RSAPLRVIGHEFPVKRSLTINVNGLEKQIETGGRIDRLDEILVDSDSARL 826 Query: 914 DITDYKTG--DNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKV--A 958 + DYKTG ++ ++ D Q+ L + + Sbjct: 827 RVVDYKTGGKAAESLKSVDEMFDSKNLSKKSDYTMQVMLYSLIEAKNDSEHNPNHRAVSP 886 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 L +I+ + + K+ D E L+NL E + + N F + Sbjct: 887 ALLFIQHAGSEDYTPVLSIDKEEVTDVTVYEEDFLRNLTEKLEEIHNPNIAFA--PTDNT 944 Query: 1017 KSNIQSEYDHLA 1028 S Y + Sbjct: 945 DSCQYCPYKQMC 956 >gi|327314683|ref|YP_004330120.1| hypothetical protein HMPREF9137_2480 [Prevotella denticola F0289] gi|326945634|gb|AEA21519.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 958 Score = 267 bits (683), Expect = 5e-69, Method: Composition-based stats. Identities = 143/1097 (13%), Positives = 301/1097 (27%), Gaps = 229/1097 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL + ++ V + P KRA L + G P Sbjct: 4 FLEYVAQDLLKKYGTD-----------MSDVAVVFPNKRASLFLNQALARMAGH-PLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSY----NLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY 131 ++ D + + +L V + E W L D+ Sbjct: 52 AYVTISDFFRQHSGLTVADPIKSICDLYKTYVEVTGNVGETLDQFYGWGQLLLADFDDID 111 Query: 132 PESPLSLPISPANAIWLAKNLADIID----------IIETEEKKWEDLHALKNEKYGMWW 181 NL ++ D + ++D E++ W Sbjct: 112 K-----NLADARLIFSNISNLRELDDISYLNDEQKAELHRFFANFDDKPEGIRERFITLW 166 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 L + E+L + + AG Sbjct: 167 DR----LNDIYNRFREKLRSQELAYEGMLYRDVAEQ---------------AGIQ----- 202 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T Q ++ Sbjct: 203 -------------------------------------TRYQHYAFVGFNVLQKVEQRIFK 225 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + M GR+ + +++ + +++ Sbjct: 226 RFKDEEKADFYWDYDRYYM-GRTNEAGNYIRQWLDRFPNSLPNDNDELYDNLGKEKEISF 284 Query: 362 IEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A E +A I LR + +A++ D +L + V + ++I+ G P Sbjct: 285 VSAPTENLQARYITEWLRKDGRYKDGTHTAIVLCDEHLLQTVIHCIPSEVETLNITTGYP 344 Query: 421 LSTTLHSSILTSL-------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L T +S++T L + + ++ +++HP K+ P LE Sbjct: 345 LQQTPIASMVTQLLILQTEGYSVQEQGYRLHHVSRVLRHPYGKYLIPNVS-----EVLEQ 399 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ A L+++ Sbjct: 400 LSKDHRFYIPP----------------------------------RAGTLLEYHPS---- 421 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 +++DW + + + L TL + S ++ Sbjct: 422 ---------DRQHLPALADWLTRNIRIIGVNGAADKDPLFE-ESVFRMFTLLTRLSDLM- 470 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 G ++A+ + + ++T+L+ ++ E + + ++G LE+R L+FD +++ NEG Sbjct: 471 AGGDLEADKVVFRRLLTQLVSSTSIPFHGEPARGVQVMGVLETRNLDFDHVLVLSCNEGN 530 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-I 711 PK + F+ +++ +L T + + ++ F + + + + T Sbjct: 531 MPKGVDDSSFIPHLIRKAYDLTTIDNKVSIYSYYFYSLIQRAKDITFLYNNSTQGSRTGE 590 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 SR++ +L+V + GQ R + + +S Sbjct: 591 MSRFMLQLMVEWNHPIRRMTLQAGQV---PMRCEAKAVTKDKA-----VLNKLDEISYFS 642 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKRINKN--- 827 + I I+ Y + I +++ D D G +FH+ + +K + K Sbjct: 643 PTAINTYISCHLKYYFKYIAEINENEETDIDDVDNRMFGNIFHSAAQLMYEKLLPKEVIT 702 Query: 828 ------------------TPEINHLMKQIIDSHFEKENLPP-----------HIDIIWRH 858 I M ++D F E + +I R Sbjct: 703 DKNIDYVLKTGKSAQPFTADGIKSTMDDVVDEAFATELFHQQPGSRRHPRLNGLQLINRE 762 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVN--IPAKMAIESIGIH----LTGFADRIDL----L 908 + K + L + + I + + I I G DR+D Sbjct: 763 VIKKYLYQLLRIDRGTAP-LRVIGHEFNVKRTLLINVNRIEKQIETGGRIDRLDEVFVGT 821 Query: 909 KSGFVDITDYKTGD--NPKKETAQKLIDP-----------QLSLEAAALKAGSFSQIDCR 955 + + + DYKTG + + + DP Q L + Sbjct: 822 EKARLRVVDYKTGSKTAEPLKNVEAVFDPKNIEKKSDYTMQAMLYSLIESRYDILHNPGH 881 Query: 956 KV--ANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + L +I+ I + ++ + L+ L E + + N + PF Sbjct: 882 RPVSPALLFIQHSGGEDYTPVIIMDGEEMTDVTLYEKDFLRKLTETLEEIHNPDVPFAPT 941 Query: 1012 LRLSEKSNIQSEYDHLA 1028 L + Y + Sbjct: 942 DDL--ERCKYCPYRQMC 956 >gi|255036136|ref|YP_003086757.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053] gi|254948892|gb|ACT93592.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053] Length = 968 Score = 267 bits (682), Expect = 8e-69, Method: Composition-based stats. Identities = 144/1055 (13%), Positives = 302/1055 (28%), Gaps = 175/1055 (16%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L V I VPT+RA L E T + + P I ++ D VE ++ +L Sbjct: 18 SLDRVQIVVPTRRAAFFLMREMAGET-TEPLMSPGIMAIDDFVESICRLEIEDPVHL--- 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L L +R PD+ D + A L +D I+ Sbjct: 74 ---------LFDLYETFREIDPDVQFD--------------RFMGWASVLLSDLDKIDQY 110 Query: 163 EKKWEDL-HALKNEKYGMWWLLAA-------------------DFLKIASKYWTERLVEL 202 K + L L W + + + + + +RL+ Sbjct: 111 LVKTDFLFEYLSEAHALSRWQESLPEGRSLNSEGGSRQYFSLFENIHQVYRSFRQRLLAK 170 Query: 203 NASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L A + I AG + +++ + ++ Sbjct: 171 GKAYRGMAYRELATDIANLSADLPEMERIYFAGFNAFTTSERVIVTALVKAKKAEVLWDS 230 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 ++ + S Sbjct: 231 DRYYMSENTVVEAGKSLREYQRSKEFGE---------------------WNWTGD----- 264 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA----IA 377 + + L N + Sbjct: 265 -----------------------------ELLSTEKHITLYGVPNATLQTKVAGELYQRM 295 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 R ++ +A++ AD NL + L +++++ G+ + +L +++ + Sbjct: 296 KRFEAEDAPVPTAIVLADENLLLPMLYSLDEEVRDLNVTMGLSMRNSLLYTLVDGIFELQ 355 Query: 438 FKLNDFMAIA-TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + + + L++ P + + Y+ + L L + Sbjct: 356 QNVVELRSRSGKLIRIPKFGHKSVD-----------KILNHPFIRHYEHVALTPLEDGQT 404 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 Q+ + E V L D L T+ N+ S +L Sbjct: 405 IIQRTLREITEGNQVFL--SSEELVTLGD-NHPLFQILFTHWQKNNAQQVIRSFYQLIEL 461 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 ++ + L++ TL F + IE + + + LI Sbjct: 462 LREVYKDYKNALETEYLYLFY-----TLLKQFEQTIEERAEL-ITLRTLKSFMFELIRQT 515 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + E S L I+G LE+R L+F+ +I+ +NEGV P+ +N + + L T Sbjct: 516 RIPFSGEPVSNLQIMGMLETRALDFERIIILSVNEGVIPQAKRQNSLIPFDAAQAVGLPT 575 Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLL-VLGGTDFFDNLKK 733 + ++ F + S + SR+++++ L + ++ Sbjct: 576 HQHQEAVMSYHFYRLLQRASEVHILYTSTNDAPGGGEKSRFVRQIEYELAQYNPLIRIEN 635 Query: 734 RGQCYLDWTRK-LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + R+ L+ + + + + + I Y + I Sbjct: 636 KTVVFEAQARQELEEVVHKDDALIAAIRA--YLDGKGIYPTHLNEFIRCSMQFYLKHIAG 693 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITE----LIKKRINKNTPEINHLMKQIIDSHFEKENL 848 + +++ GT H + + + EI ++++ D F+ Sbjct: 694 VKEKEEVEEELGMDKIGTWLHASLERLDLEFFLLDKDPSEEEIVQVLREEFDRLFKGYVT 753 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES------IGIHLTGFA 902 ++ I+ + + +FL H + + + P I+ + L G Sbjct: 754 NLGLNRIYYQIGEQQILTFLRHHMAQKPRRQILAAEQPLHTRIQLVLQGAFTPVRLGGKI 813 Query: 903 DRIDLLKSGFVDITDYKTGDN----------PKKET--------AQKLIDPQLSLE-AAA 943 DRI+L + G + + DYKTG P + QL + Sbjct: 814 DRIELGEDGILYVMDYKTGSVELTGKQKLADPVAREEVIRADPDRKMGYVRQLWIYEYLM 873 Query: 944 LK----------AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 + G+ V + FY K I + + E EKS Sbjct: 874 YRRMKEENGLKLRGNTYNFGEYAVKSGFYSFRDPKNLIANPLELTDQLAPGEFIEKSEVI 933 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L +I+ ++ + + PF + ++ + Sbjct: 934 LTDILNVMLDPDVPF--RKTDDLTTCKFCDFTGIC 966 >gi|296270933|ref|YP_003653565.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] gi|296093720|gb|ADG89672.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] Length = 1074 Score = 266 bits (680), Expect = 1e-68, Method: Composition-based stats. Identities = 131/1052 (12%), Positives = 282/1052 (26%), Gaps = 108/1052 (10%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ + + + +++A +ELR ++ Sbjct: 43 PGTGKTTTIVEAVVHRVERRGIAPE--------RILVLTFSRKAAEELRERITARLQ-RT 93 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLY 131 T P+ + +L P + + +RLLE+ RL+ + Sbjct: 94 TRSPLAFTFHGYAYALLRRAAVLRGEPPPRLLTAPERLLEIRRLLQG--------ELEDG 145 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + A+ L D + + L L E+ W A F Sbjct: 146 ARHWPAEMRELLKTRGFAQELLDFLSRAAERGLDGDALVRLGRERGRPDWEAAGRFFNRY 205 Query: 192 SKYWTERLVELNASSPVGYQIA---LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + V P + A L A + +++ + PA L+ Sbjct: 206 HDRFDVDPV-PTIDYPELIRTAAGLLRDEAARRRERDAYDAVLVDEYQDTDPAQELLLQQ 264 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 +A +G ++ D + + + L Sbjct: 265 LAG--DGRELIVVGDPDQSIYGFRGADPGAIMRFPERFRTRDGRPAPVVAL--------R 314 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + +R G R + P + + + +P +V ++ A + Sbjct: 315 ECRRFGEALLAASRRVAARLPAAPAPTVAPAGDPGGHRDLVPADGLEPGEVRVLIAGSAS 374 Query: 369 EEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLST 423 +EA +A LR + ++ + L+ ++ L+ G+ + ++ PL Sbjct: 375 QEAAVVADVLRRAHLIDGVPWRRMAVLVRTAVRQVPLLRRALSAAGVPVAVAGDELPLVQ 434 Query: 424 TLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L +LL D L+ PL R Sbjct: 435 EPGARPLITLLRVAVNPAALDIGTAEELLTGPLGGTDVIGVRRLRRALRAAEQEAAAAAA 494 Query: 482 SYDIMDLKSLV-LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D P S + A + + + ++ Sbjct: 495 EADGQATLPFTPRSSDELLIAALRDPRELSGVEPHIAAPAERVARLLAIAREGVRRHRPA 554 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ S + + +L ++ F+ + Sbjct: 555 EDVLWDIWQASGLAERWTAESLAGGTRGAQADRDLDGVVALFDHAARFTDRLPKAGVE-- 612 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + D++ R I G+T+ + + IL ++ L +D +++ G+ EG+WP + Sbjct: 613 --VFLDDLLHREIAGDTLAEAAPEGDAVRILTAHRAKGLEWDVVVVAGVQEGIWPDLRLR 670 Query: 661 NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 L ++ T+ + + R + ++ + Sbjct: 671 GSLLGVDELVELTDRSMPEGDRAAAAALTSRLLDEERRLFYVAVTRARRRLVVTAVGGAD 730 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---------- 757 SR+L LL G + + R L P P Sbjct: 731 TEERPSRFLTELLPAGAEPAAVDDRMRWLSLPALVADLRAAVCDPKRPEPVRRAAAAHLA 790 Query: 758 -----------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 S S +++ + Sbjct: 791 RLARAGVPGAAPGEWYALTELSDDRPLTWPDGAVRVSPSAVERFTECALRWLLETAVGTG 850 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 G + H I + ++ + + D F+ + Sbjct: 851 NGGP------NQHVGVVVHAIA---ALAAEGGDETDLVRRLDDVWDR-FDFGGAWFNRKQ 900 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + + F + + + + V P + G+ +TG DR++ + G Sbjct: 901 REAAV--GMIERFARWQRERVREL--VAVEEPFTARV-GPGVLITGRVDRLERDRQGRPV 955 Query: 915 ITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 I D KTG PK + + PQL + A G+F + + + K Sbjct: 956 IVDIKTGSGKPKNDEIDRH--PQLGVYQLAALLGAFERHGLARSPGGASLLHVGKAAERG 1013 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 ++ AD+ + L+ V G Sbjct: 1014 AVEQTQRALADDPDPGWAERLVTTVARGMAGS 1045 >gi|284033230|ref|YP_003383161.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283812523|gb|ADB34362.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1076 Score = 265 bits (677), Expect = 3e-68, Method: Composition-based stats. Identities = 123/1038 (11%), Positives = 264/1038 (25%), Gaps = 111/1038 (10%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ D V + ++A ELR G+ + Sbjct: 50 PGTGKTTTLVEAVVDRVANRGLSAD--------QVLVLTFGRKAATELRDRITTRLGRTT 101 Query: 73 TILPIIKSLGDVVEEKFT-ADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDL 130 +P + + ++++ + ++ L L+ ++ +++ Sbjct: 102 RSMPSM-TFHSFCYALLRRFTPADAFDVPLRLPSGPEQSLRLSEVL--------GGSREV 152 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + +I EDL A+ W+ DF + Sbjct: 153 GVVHWPRSLHPALKTRGFTDEVQAVIGKARQLGLDPEDLSAIGQSASRPEWVAVGDFFEE 212 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V + I + E + ++ + + + P +L+ +A Sbjct: 213 YLQILDHEQVLDYSELIHRAVILAQQPEVQAKLREEFKVVFVDEYQDTDPGQTKLLQAIA 272 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +V+ D + + + T + L R Sbjct: 273 GDGRDLVVV--GDPDQSIYTFRGADVRGLLRFTEEFPTVTGEPAAQIALAT----TRRFG 326 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 L VS + R V V E Sbjct: 327 TTLLRVSRNVVNRLGVPGTLDRET------FERFRNPDASGCVFGPGKVEANLYSTSGAE 380 Query: 371 AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 IA LR + + + L+ + ++ L GI +D++ PLS Sbjct: 381 LEHIADLLRRAHVQDGVAWHDMAVLVRSGSRSIPPLRRALAAAGIPVDVAGDELPLSREP 440 Query: 426 HSSILTSLLNAIFKLNDF--MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L A+ + L PL + G + Sbjct: 441 AVRPMLLALRAVADPATLTVDVVRALALSPLGAMDAGQLRRLARVLRKRDREAAGGQRLP 500 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 D + P + + V L + +L+ L Sbjct: 501 RSSD---------ELLREALMEPLLLDEQASPAEARFVALGERLLKARNILTAGAAPDEV 551 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 S S W + + +L + E K + Sbjct: 552 MWSLWSESPWLRRLRGQANSGGEVARAANRDLDSLCALFDAAG----RAEEQVGFKGVSA 607 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 ++ + I + + + + ++ S+ L + +++ + EG WP + Sbjct: 608 FLSELESLEIAADNRYDATYRENGVQLMTAHRSKGLQWRLVVVASVQEGQWPDLRRRGSL 667 Query: 664 LSRVMQSDLNL---KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQR 718 L L +A + + F +A LI T SR L Sbjct: 668 LEPDRLGPDGLVEPLSAGALLAEERRLFYVAITRARERLIVTAVQAPEADGDQPSRLLAE 727 Query: 719 L-------------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 L VL LK+ L + P Sbjct: 728 LDIPVKLVAGRPRRPLSLPGLVADLRCVLADPASSAALKRVAADKLAQLAEATDERGYPL 787 Query: 754 YKRPKPFPPLEAQPR--------------TYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P + R + S + +++ P + +R + Sbjct: 788 VPTADPDRWWGVRERTKSERPIAVPDQPVPLTGSALTTIVDCPLRWFLQRRAGGETPST- 846 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 G + H + + + + E+N + + + + E E+ R Sbjct: 847 ----SAIGFGMVLHTLADAVATGTLPPDADELNGWLDK-VWTQLEFESAWISDR--ERVE 899 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDIT 916 + F+ + I + + + + + G DR++ G + + Sbjct: 900 AEQALRRFVAWHQGR-PDRRMIGSEVEFSVLLPDADHPAVQVKGRMDRVEQDADGKIRVI 958 Query: 917 DYKTGD-NPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 D KTG P K + + QL++ A + + ++L+ Sbjct: 959 DLKTGRTAPTKPAVARHV--QLAIYQRAIASRQLKLLGEDAESGGAELVQLRHDDSGLPK 1016 Query: 975 TNDKKKYSADELSEKSLK 992 + E L Sbjct: 1017 VQGQAPLEPGENGRTWLD 1034 >gi|284036574|ref|YP_003386504.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74] gi|283815867|gb|ADB37705.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74] Length = 1039 Score = 264 bits (675), Expect = 4e-68, Method: Composition-based stats. Identities = 151/1093 (13%), Positives = 313/1093 (28%), Gaps = 180/1093 (16%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L V + +PT+RA+ E ++ + + P ++ D + + L+ S +L Sbjct: 18 SLNDVWVILPTRRAVSTFLDELAALSD-RPFLAPHALAVDDFITQAAGVQLIDSVSL--- 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L L +++ P + I A L D I+ Sbjct: 74 ---------LFELYDVFKEIDP--------------LVEFEQFIGWASILLSDFDRIDQY 110 Query: 163 EKKWEDL-HALKNEKYGMWWL--------------------LAADFLKIASKYWTERLVE 201 +L L K W + + A +RL E Sbjct: 111 LVNPHELFSYLTAAKALERWQVDMPSSAKPIVETPGTTRYFKLFENIHTAYHALHQRLNE 170 Query: 202 LNASSPVGYQIALMRAEAEH-LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + L + + G A ++ + + A ++ Sbjct: 171 QRLAYRGMAYRLLAQQVEPLIRDNLAYERVYFVGFNALSKAEEHIIRVLVDAKK-AELIW 229 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + E + +S LA+L + L ++++ +G + Sbjct: 230 DADLYYMNDRRQEAGEFLRRYKDNGWLFSRQNHADLAQLSNNLLGSEKNIRVVGVPN--- 286 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 T + Q+ S V R Sbjct: 287 -----------------ASMQTKVAGKIYSEWQRADSAV------------------PRD 311 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK- 439 + + K A++ AD L V L +++++ G+ L ++L +++ +L Sbjct: 312 AATPSPKT-AIVLADETLLVPVLYALDENVTDLNVTMGLSLRSSLLFTLVDTLFEMQRTV 370 Query: 440 --------------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L+ HP K + L + L + + + Sbjct: 371 HEFRTKDGRDLKIPKFHHRHVVKLLNHPFLKQYERIRGLMWPGDVLSTGEILPPEPLFQW 430 Query: 486 MDLK---------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + + + Q + ++ +EE + D I + + Sbjct: 431 IAKEIVKNQRVYLTERDMLELGQDDPLVRVLFRRWPNEEPMKAIRTFYDLIE-LLRDVYR 489 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP------NLWFEEEGKTLS---SL 587 + K L + G + + Sbjct: 490 TSQDAIEIEYLYLFFTLLKQLEATLDRQGEGAQGAGRGVPVPKARNRGQGGTAILDTGAP 549 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + LI ++ E S L I+G LE+R L+FD +I+ Sbjct: 550 VPMLHVHEPSAAVTVRSLKQFLYELIRQTSIPFTSEGKSQLQIMGMLETRALDFDRVIIL 609 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSD--LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704 +NEG+ P++ N + + +D + L T + A+ F ++ + Sbjct: 610 SVNEGILPQSRKLNSLIPFDIAADENIKLPTYSEQEAVMAYHFYRLLQRASEVVLLYTTS 669 Query: 705 EN---NIPTIASRWLQRLLVLG-----GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + N SR++++L G R + P + Sbjct: 670 TDAYGNSKGEPSRFIRQLEHELVPRSNGLVRISYPTVRFGRTSEKKETSLTELSVPKTES 729 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + + S + Q ++ Y RI+ + ++ + G+ H ++ Sbjct: 730 VRDGLINLLITKGLYPSYLNQFVSCSMRFYFSRIVNISEEEDIEEKMGAAEFGSWLHKVM 789 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISHSFLEHEE 872 L + K P ++K +++ F N + ++++ L K+ F + ++ Sbjct: 790 ERLDLEYRLKALPIDESIIKMLLEEEFASTNKGRVIESGMNLLLYDLAQKLMLDF-QRQQ 848 Query: 873 KIQSSIEKIFVNIPAK----MAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDN-- 923 + I + ++IE G + + G DRI+ L + I DYKTG Sbjct: 849 NALPGLTVIGTEQTLETYLTVSIEGRGAVRVRIAGKVDRIERLGD-QIRIVDYKTGKVDL 907 Query: 924 --PKKETA----------QKLIDPQLSLEAAAL-----KAGSFS---------QIDCRKV 957 + QL L + G + V Sbjct: 908 SEKTPKDLSDRLLNDGGDDAGKMRQLWLYRYLALKNISEYGGLPRDRAKRDIFNAEGMPV 967 Query: 958 ANLFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 FY + FK + + S + E S L +++ L + EQPF Sbjct: 968 EAGFYSFRDVNGGFKTNPVRFGDND-SPGQYIEDSEDLLRQLIQQLLDPEQPF--RKTDQ 1024 Query: 1016 EKSNIQSEYDHLA 1028 ++ +Y + Sbjct: 1025 IETCQFCDYKGIC 1037 >gi|148284069|ref|YP_001248159.1| hypothetical protein OTBS_0148 [Orientia tsutsugamushi str. Boryong] gi|146739508|emb|CAM79214.1| hypothetical protein OTBS_0148 [Orientia tsutsugamushi str. Boryong] Length = 942 Score = 264 bits (673), Expect = 8e-68, Method: Composition-based stats. Identities = 157/997 (15%), Positives = 336/997 (33%), Gaps = 92/997 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L V + +P + QEL+ + K++ +LP + +L + A Sbjct: 27 SLDKVKVILPYSQQCQELKKIIMLTAQKEAMLLPDVLTLKQFITSFIAASNYS------- 79 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L + + + + + + I +A+ L+ L + +E++ Sbjct: 80 -------LSICCQLSSYEQ---EAVLSKIIQQHNQQQIRLGDALKLSGKLLHLFQQLESQ 129 Query: 163 EKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + L ++ +W FL +A W++ + S L + Sbjct: 130 QINLTQLKDFVDQMDSSEYWQNTYKFLSLAYIEWSKLYSNSSYDSKSDIFSQLQDLLKSN 189 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 L +I+AG + + V + G ++ P Sbjct: 190 LSS---NIVILAGLLPTSKLELIIFKEVLSLEFGNVIFP---------------PIYLEE 231 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + S++ Y + +I +DV L +K + D+ Sbjct: 232 LCYSVKNSSNTLYDFQYFVKSCNISLDDVTYL-----AKEIALPTKNKPIQLSEFLDLPK 286 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNL 398 +++ + D+ ++ +++ +EA +A + L + K ++T + Sbjct: 287 LNLVASDTKFNSDIPIDIEYVKVNSQYDEAKLVAAMIHNYLIKANAKHNKILVVTTTSSF 346 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + + L+++ IN + + L + + L + + L+K PL Sbjct: 347 TTLLTMHLSKYQINYANLTNVDIKQLLEINFILVLADLVSSNFSISKFINLIKTPLLTSS 406 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 KN + +LK ++LD +D Sbjct: 407 SS-----------NKFENLILKNKFQQSELKQILLDL----------------TISKDDS 439 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 IL + L Y C L + + E +W Sbjct: 440 ELQKWATFILSALDNLWIYYNCNTILCDQL-----------IIDLLQAAEKLTEGKIWQF 488 Query: 579 EEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + K +S + ++I + ++ +++T L+ + + ++ + I G + Sbjct: 489 QFSKRISDVLKEVIHIAKQFGNIDIRDFSNVLTELVTMIKFNYEHDYNANVVITGADSAI 548 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 LL+ D +I+ N WP N+ +NP+L++ + S L L + + + H+ Sbjct: 549 LLSADYIIIPEFNNDHWPGNSIQNPWLNQAIYSKLGLIERNAHYDRKQYILYTILQKAHV 608 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-WTRKLDYTTKQPHYKR 756 T S + T S+++ +L +L + ++ Sbjct: 609 SLTNSQFTASGKTNDSQFILKLQLLAFKNPLIRIRVNDLKLQHNQNYTSVDNKSTTFQIS 668 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 +T S ++I+ LI +PY YA+ IL+L + + G H +I Sbjct: 669 SGMLLSSADIVKTISATDIEMLIRNPYGFYAKNILRLKPVILNDDQLTQAKFGDFIHTVI 728 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + ++ + I + N ++W H+++ F+ + + ++ Sbjct: 729 HRYTICYKDMEESKLINYFIDIGKQLIDCYNCSSFAKMVWLTKLHQLAEEFVRFDMERRN 788 Query: 877 SIEKIFVNIPAKMAIESIGIHLT--GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 KIF ++++ L ADRI+ ++G I D+KTG P K+ Q I Sbjct: 789 EGFKIFSEQLGQISLNINNHALNIMAIADRIEYSQNGECYIIDFKTGTVPNKKEVQHGIA 848 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 QL +E+ L G F + + YI++ + + E+ +K L Sbjct: 849 TQLIIESIILYKGGFKDLPTIMPNKIIYIKITS---TKPLLEFTEITVDQEMLDKHELGL 905 Query: 995 IEIVTLLQ-NGEQPFISHLRLSEKSNIQSEYDHLARV 1030 +E++ +G F S + + + + Y HLAR Sbjct: 906 VELLQYYIKDGGVFFPSPVD--KLAPKYNNYKHLARY 940 >gi|126662604|ref|ZP_01733603.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38] gi|126625983|gb|EAZ96672.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38] Length = 925 Score = 260 bits (664), Expect = 8e-67, Method: Composition-based stats. Identities = 138/1043 (13%), Positives = 309/1043 (29%), Gaps = 172/1043 (16%) Query: 14 SSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST 73 S+ F ++ +L+ + +E L++ I +P KRA L E ++ Sbjct: 3 STTFLDKLSQTILSQSDIE-----------LSNCLIVLPNKRAKVFLLESLKERI-NSTS 50 Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133 P I S+ D +++ + I+ L E + L K + + Sbjct: 51 FAPSIISIEDFIKDISGLR---------TIDPIELLFEFYEVYLSVTEKAKQQTFEEFAT 101 Query: 134 SPLSLPISPA--NAIWLAK----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + + L + I+ ++ + + L + + +W Sbjct: 102 WAKTAIQDFNEIDRYLLDPNHVFSYLKDIEALKRWNLEPSNTTKL-IDTHIEFWAK---- 156 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L + + + L++ ++ A T +I Sbjct: 157 LPLYYESFYNHLLQKGIGYQGLLYREAVKNL--------------AAFTATITNQIY--- 199 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + K+ L + Sbjct: 200 --------------------------------------FAGFNALNQAEEKIFKHLANEN 221 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + + + + N ++ +I Sbjct: 222 KAKIYWDIDEVFLNDSYHDAGLFIRKFKKEWKPFVNQDFEWVVNHFSEEKNIEIIGTPKS 281 Query: 368 REEAISIAIALR--MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 +A + + + + + +K+A++ D NL V L ++I+ G P Sbjct: 282 IGQAKIVGTIVEKIQAKNPHLEKTAIVLGDENLLLTVLYGLPETVDALNITMGYPSKNNP 341 Query: 426 HSSILTSLLNAIFKL---------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 +++ L + + ++ HPL + + Sbjct: 342 AQLLISKLFKMHSNAKQRNEMSYTFYYKEVLDVLNHPLVEPYCKVNDVVNVIQNNNFTFF 401 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 K + + + ++ + L D I + L Sbjct: 402 SNQKLFSLYDE-------------------KYPNSENKFFQLLFTRWDDAISDILANLNA 442 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 +T + D+ + F + + ET + Sbjct: 443 I-------------------LLTIKSYLSNDDDEEKVTKAFVYSVFKTINKLTNYHETYN 483 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 I+ + I ++ID V + E S L ++G LESR+L+F+ +I+ +NEG +P Sbjct: 484 QIE-SLPSLQAIYKQIIDLAEVSFEGEPLSGLQVMGVLESRVLDFENVIITSVNEGKFPA 542 Query: 657 NTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASR 714 ++N F+ ++ +L L T EK H + + +++ + SR Sbjct: 543 GKSQNSFIPYDVKKELGLPTYKEKDAIYCYHFYHLLLRAKNVWLLYNTDNEGIDAGEKSR 602 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 ++ +L + + P + A + +S S Sbjct: 603 FITQLEIEKQPKHTITSTIYNAVLPEKA---YEPVTIPKTDKILTRLQEIASEKGFSPSS 659 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---- 830 + I +P Y +RIL+++ +++ GT+ HN + EL +N+ Sbjct: 660 LTNYIRNPLQFYMQRILRINEAEDVEENIAANTLGTIIHNALEELYTPYLNQFLALHHIE 719 Query: 831 -----INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---KIQSSIEKIF 882 I+ ++ + +++ + +++ + + ++FL+ E+ + +I+ + Sbjct: 720 AMETKIDEVILKHFKEIYKEGEITKGKNLLAFEVAKRNVYNFLQVEKKDIEAGQAIKVLL 779 Query: 883 VNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKE--------- 927 + IE I + G DRI+ +G + I DYKTG + Sbjct: 780 LEASLSCEIEVKSFPFPIKIAGKVDRIEER-NGAIRIIDYKTGKVDGNSLKVIDFTDLTS 838 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA--DE 985 + QL A + + + + +K F + K+ Sbjct: 839 DIKNEKIIQLLCYALMFENHELKKNKEVSAGIVSFKNMKSGFLPFGLGKGKEAEIVVSTN 898 Query: 986 LSEKSLKNLIEIVTLLQNGEQPF 1008 E L ++ + N E PF Sbjct: 899 TLEDFKSELETLIVEIFNVEIPF 921 >gi|86143637|ref|ZP_01062013.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis MED217] gi|85829680|gb|EAQ48142.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis MED217] Length = 900 Score = 260 bits (663), Expect = 1e-66, Method: Composition-based stats. Identities = 136/1012 (13%), Positives = 286/1012 (28%), Gaps = 176/1012 (17%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L L + +P+KRA + + LP S+ ++VEE L Sbjct: 17 LPLTQTVVVLPSKRAGNFFLQRLKLQLQETTCFLPKTISIEELVEEISGLTAASQTQL-- 74 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 +EL P S N + + L + I+ Sbjct: 75 -------QVELYHTYQTHFEG--------------DNPESFLNFLGWGQTLLGDFNEIDR 113 Query: 162 EEKK-------WEDLHALKNEKYGMWWLLA------ADFLKIASKYWTERLVELNASSPV 208 + L + L + +++ + L L Sbjct: 114 HLIDTNSFFDYLSAIKELNHWSTDQDSQLISNYLIFWKSISSYYEHYKQHLERLGLGYQG 173 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + +L + + ++ G A +++ PN + +D Sbjct: 174 MLYRKAVENLERYLDQNEE-YVLFCGFNALNTAEQKIIDRFLERPN-TKIYWDID----- 226 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 H K +K+ +++ + Sbjct: 227 --------------PYFLEDQNHVASRFIKT---------YLKKWNAAADKNFA------ 257 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 + ++ + + L + + Sbjct: 258 -----------------FPVEQSNFNVEKNITATGIAQHVGQVKYVGQLLENLSNAELNE 300 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI----FKLNDFM 444 +A+I D +L + L +++++ G+PL ++ S + + Sbjct: 301 TAVILGDEHLLLPLLNSLPASIKHLNVTMGLPLEQVAQAAFFESWFQLQINKQGQGYYYK 360 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 + +L+ A E L+ +++ L+ + N Sbjct: 361 DVLSLLDQQYAILLLD----------GEREILKRTITEKNLIYLEPQFIIDSNASDNAKL 410 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + S E + + I + + Sbjct: 411 LFSSWQNSSSSALEYILESIQAIKEIL--------------------------------- 437 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + L F L + + + L+ ET+ K + Sbjct: 438 --FPQKNWLQLEFLHAFLELFTRLKNL-NDTYTYLNDLRTLKQFYKELLSQETLDFKGDP 494 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQ 683 L I+G LESR+L+F +I+ LNEG +P ++N F+ ++ + L T EK Sbjct: 495 YQGLQIMGVLESRVLDFKNIIITSLNEGTFPSGKSQNSFIPFDLKIEAKLPTYREKDAIY 554 Query: 684 AAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 A H F + + + + SR+L +L + + Sbjct: 555 AYHFFRILQRAQKVNLIYNNEAGGLNSGEKSRFLLQLATDPNARYQYQEQSASAPVSLEP 614 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 L K P + +S S + I +P Y + +L ++ + + Sbjct: 615 VTLKQVEKTPEIIEA----IKKHAASGFSPSALSTYIRNPIDFYYKYVLGVEELEAVEDV 670 Query: 803 PDRTDRGTLFHNIITELIKKRI-----NKNTPEINHLMKQIIDSHFE----KENLPPHID 853 GT+ H + L K + + +I + + FE N+ + Sbjct: 671 IAHNTLGTVVHESLENLYKPYLNTILTEEILQQILKQVNAEVQHQFELHYNALNIKTGKN 730 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +I ++ + +FL E + S ++I + + + + I L G DR+D L++ Sbjct: 731 LIIFNVAKQFVLNFLNLELQSVKSGKEIIIKALEAKYTIQL-TPEIKLKGTVDRLD-LEN 788 Query: 911 GFVDITDYKTGDNPKKETA------------QKLIDPQLSLEAAALKAGSFSQIDCR-KV 957 I DYKTG + + ++ Q+ A L + + Sbjct: 789 KVTRILDYKTGKVDRGQLVIKDWETLISDYKKQSKAFQVLCYALMLSKS--EGLPGACEA 846 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 + + L F D S EL + + L++++ + + PF Sbjct: 847 GIISFKNLNSGFLKLSQDKDTAVTS--ELLQTFEEYLLKLINEILDINTPFT 896 >gi|256396909|ref|YP_003118473.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] gi|256363135|gb|ACU76632.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] Length = 1134 Score = 259 bits (661), Expect = 2e-66, Method: Composition-based stats. Identities = 126/1089 (11%), Positives = 287/1089 (26%), Gaps = 124/1089 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ T + P V I +++A ELR Sbjct: 50 PGTGKTHTLVEAVISKTDPDRAALRPD------QVLILTFSRKAASELRDRIGRRLPLSG 103 Query: 73 TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P+ + D L +S ++ + + L+ + Sbjct: 104 V-APLATTFHSFCYALVRRFQDPELFTEPIRLLSGPEQDVFVRDLVSGSIDVGIGGGALG 162 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + A+ L ++ +L W A+ F + Sbjct: 163 ERIQWPQDLRAALATRGFAEELRTVLARARELGLDPTELAQAARRADRGDWYAASAFFEE 222 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V + + + ++ + + + P+ RL+ +A Sbjct: 223 YLDVLDVQGVLDYGELVHRAVLLAGQEDVRRELRHDFRAVFVDEYQDTDPSQVRLLQALA 282 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +GA ++ D + + A L + Sbjct: 283 G--DGADLVVFGDPDQSIYQFRGADVRGILDFPEAFRRMDGSPADTAVLRTSRRCGPALL 340 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 K +++ M LP + E + + + V + E Sbjct: 341 KASRDLTRRMP-------IPLLPTEKVREHRDLAAEGPVADGEPIEGSVQVFTFPTPNTE 393 Query: 371 AISIAIALRMSLDENKKKS----ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 +I +R + E+ L+ + ++ L G+ +D S PL+ Sbjct: 394 LDNIVDMVRRAHLEDGVPWDEIAVLVRSATRSIPALRRALIAAGVPVDTSGDELPLAAEP 453 Query: 426 HSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 ++L L L+ PL E E A N Sbjct: 454 AVAVLLQALRVADNEAALTPDVARALLSGPLGGMDAFELRKLARALRAEERAANQNGVRG 513 Query: 484 DIMDLKSLVLDRIA--------------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + ++V + + P + E+ E A L +L+ Sbjct: 514 VPAEHSAVVPELARITEPSVNGVRPSEVLLREALAEPARLVAMDEDVAEPARRLGMLLLR 573 Query: 530 CITPLVTYKTNKNSTCGNLSISD------WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 L + + + S L+ + + Sbjct: 574 TRQILRGGGSVERALWELWSGGGDERDRNRAHRWPERLERTAQRGGNTGRAADRDLDAVC 633 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + ++ E + + D+ + + G+++ + + + ++ +S+ L + Sbjct: 634 VLFDYAARAEDRATGRGVRNFIADLEAQELAGDSMAAQSSRGGAVRLMSAHKSKGLQWRF 693 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY-------IGQAAHDFEMANGTRH 696 +I+ G+ +G+WP + L + L++ E+ + + A R Sbjct: 694 VIVAGVQDGLWPDLRLRGSLLQADLIGRNGLRSMEEIPTASTLLAEERRLFYVAATRARE 753 Query: 697 LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT--- 748 + ++ ++ SR++ L V L+KR L Sbjct: 754 RLVVTAVDSALIGDDAAAEAPSRFVYELGVEVQP--LPGLRKRALAIPALVADLRRVLTD 811 Query: 749 -------------------TKQPHYKRPKPFPPLEAQPRT-------------------Y 770 Q RP + Sbjct: 812 PKSSDQLRQAAAERLARLADAQAGDGRPLVPSAHPDKWWGLVEETASEQPVRDPAKPLLL 871 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S S++ + + G + H + E+ K Sbjct: 872 SASQVAAIDECSLRWFLDHEAAAHEQKTV-----ALGFGNVVHVLADEVAKGDTPARLDV 926 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + ++ D E FL + + + Sbjct: 927 LMERLDRVWDR-LSFEAQWQSPQQKEEAR--AALERFLAWHVTDRGRLLHS-SEQEFDVR 982 Query: 891 I----------ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSL 939 + E + + G DR++ ++G V + D+KTG P K AQ+ PQL++ Sbjct: 983 LNVGAGDSEDGEGFDLRIRGSFDRVETDEAGLVYVVDFKTGKNVPTKNEAQEH--PQLAV 1040 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE-KSLKNLIEIV 998 ++ G+ + + + L++ ++ S + E K L + Sbjct: 1041 YQLVVREGAIQGV-SNESGGAELVFLREGDAAGLPKTAEQDPSLELPGETPIEKKLATMA 1099 Query: 999 TLLQNGEQP 1007 + + Sbjct: 1100 ARVLDENFA 1108 >gi|78356630|ref|YP_388079.1| hypothetical protein Dde_1587 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219035|gb|ABB38384.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 997 Score = 259 bits (660), Expect = 3e-66, Method: Composition-based stats. Identities = 143/1079 (13%), Positives = 294/1079 (27%), Gaps = 155/1079 (14%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 P V I + F + ++ + T E I P R + L F Sbjct: 9 PPVAIIPWQNDFLQALLRYVTEHTDGET-----------GRAVIVFPHSRPRRYLLDLFR 57 Query: 66 EITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + ++P I + + + TA + + R+ L + Sbjct: 58 TSPDIPRPCLIPQILPVSEFLSAVSTAGSTAQ---PRTIELLDRVGLLLECVRELGIGEQ 114 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKN---------LADIIDIIETEEKKWEDLHALKNE 175 P S P P +A+ L LA +++ + + +D H + Sbjct: 115 PPSAGEMPASATFTPRGPLSALPLTDARRFFPWGMRLAALLEDFYNQGLEPDDYHYM-EG 173 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 + + L + +T RL N ++P A I IAG Sbjct: 174 DVVDFAARLLEQLGSIHRLYTGRLDAENWTTPGYDAFRAAHAADSLPAMFAGKIIFIAGF 233 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 G ++ +T+ + +VL + + + H Sbjct: 234 YGLTGVEKKVFTTLRSACGAHMVLHT-------------DPALAAKKTVHWSCKEH---- 276 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 S + + + Sbjct: 277 ----------------------------------------ESLLEQWQAGTVLLEEPEDR 296 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 + + E + + ++ L + ++ ++SA++ D + + L R +++I Sbjct: 297 HATIEYHEGFDLHSQLDALQKKLTQT--DSLEQSAVVLPDSGMLMPLLHHLPR--KDVNI 352 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 S G PL + + +L ++++ + I L++HP K + +R + Sbjct: 353 SMGYPLGKSPLAQLLDTIMDLQEGRTPSGYPWRRIIDLIRHPYLKMLS--LHNARPLQQV 410 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 R + D ++L ++ +A D E LV I Sbjct: 411 FRHMERSVRQGARHTDPRNLQIEYLAEADATGAGTAAV------DDEALAALVSRIFDL- 463 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 T ++ T L D ++ P + + Sbjct: 464 -----TLTRWERVSTPQQLAGVLADMCTLLLEQGADMWKRFPVDAECMYRLMHRVIPALR 518 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 T + ++ I+ +++ E V + E + L ++G LE+RLL F + + E Sbjct: 519 ESTVRDAELDSGLLYTILREVMNAERVPFEAEPLTGLQVMGMLEARLLRFRRVYVLDATE 578 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN---- 706 P A +P L ++ L L +A++F G R + Sbjct: 579 NNLPGVPANDPLLPENLRGLLGLPDIRHRERVSAYNFFRLIKGAREVTLLYQAGTTQSGL 638 Query: 707 -NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT---RKLDYTTKQPHYKRPKPFPP 762 + SR+L+ L+ L+ + + Sbjct: 639 FDEKKQRSRFLEELIWQDEQRTGRLLQAGTPPLHAVSYSIPAISLHDAVIPRSATIDDRI 698 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 E R S + + + P + + R+ ++ + D G L H ++ E Sbjct: 699 RELLARPVSATMLDSYLRCPVSFFYERLCRIAPAEQVNEGDDHLGVGDLMHAVLQEFFTP 758 Query: 823 RINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS-HSFLEHEEKIQSSI 878 + + + L + + + Sbjct: 759 YAGQEITRGQLDAKALTGLFHQRLHSSGLQDTLPYDSYCMLSVAGPERLTRFLNNQPETT 818 Query: 879 EKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA------- 929 + + + +E+ G + G DR+D G + DYKTG K Sbjct: 819 RILKLEEALEAKVEAGGSTYWIAGRLDRVDER-DGCDIVLDYKTGTARKPAQDVWKSEDL 877 Query: 930 --------------------QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 L QL ++ R N +I L+ Sbjct: 878 WEKIARWHPAAEDDPLPLLSDALRSIQLPFYLYL-----YATACGRPAGNAGWIALRDSG 932 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K + + + + + +I + F K Y +L Sbjct: 933 KEEMLFTAAGRDEVQHAAAHQIPAIIGFLLQHMTTSSCFRPRR---GKHCDWCFYANLC 988 >gi|222475020|ref|YP_002563435.1| hypothetical protein AMF_308 [Anaplasma marginale str. Florida] gi|222419156|gb|ACM49179.1| Conserved hypothetical protein [Anaplasma marginale str. Florida] Length = 946 Score = 258 bits (659), Expect = 3e-66, Method: Composition-based stats. Identities = 156/1057 (14%), Positives = 321/1057 (30%), Gaps = 176/1057 (16%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V T+ S F + + + + VP+ Q L E + Sbjct: 24 RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 67 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +T + + I + V + + + +LL LA+ + W Sbjct: 68 LTAHGANL--DILAFTSVD-------GCAATAYDASMGAAGQLLLLAQFVAQWSAAHRAD 118 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 L T + L +++ D Sbjct: 119 YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 160 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL +W + + L+ I++AG T L Sbjct: 161 FLCDLVPWWEQERKSRGLAPSGCGIGPLVEGFERS-----GKRIMVAGIVFGKVFTRFLR 215 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + + IVLP +D + W T+ +S H QY + +LL L + Sbjct: 216 LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKNLGVG 262 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R +V+RLG V + + + D+ LI + Sbjct: 263 RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 307 Query: 367 EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406 E EEA+ + L+ E + +A + ++ + L Sbjct: 308 EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 367 Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R + I A + S+++ + + + + + ++KHPL + G Sbjct: 368 FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGNAVQLLCMLKHPLVRLG 427 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + E+ +RG+ + E+ + Sbjct: 428 YDADEYRKLLAEFEIRVVRGHSAT----------------------GFEAIGSAIREEFQ 465 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 +++ I+P++ + +I + V CL+ + KL Sbjct: 466 QLEEFWRKVVEAISPMINVREGS-------TIGEIAAAHVQCLERL----MNKLDTSECT 514 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 +S+ FS + ++ + L+ + K + + Sbjct: 515 HALNKISTFFSLFDNYCMGVAVFSLTSYKEVCTLLVRAFFTIERNKLFGVNLAT------ 568 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 D +IL G +E + + L+ ++ L L E+Y G+ + + L Sbjct: 569 --RDAVILSGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 624 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 T+S + W++ L L LK R + Y + ++ Sbjct: 625 ITKSAESFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVSSNVVADPHRASA 676 Query: 759 PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 P P L+ + + S + LI++PY Y + ILK+ + H I Sbjct: 677 PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHSVRGFNIIAHKI 736 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + E + + +L+ +I F+ P+ ++W F +++ +F + + Sbjct: 737 LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFEEMARNFFAVDSER 794 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 +S+ + + S I + DR++ +K G V + K G P K + Sbjct: 795 RSAASRTESGKSFVWYV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 853 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 A + A ++ VA+ Y ++ + E+ + + Sbjct: 854 S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 903 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 E++ PF E + S Y+ L+R+ Sbjct: 904 KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 936 >gi|269127955|ref|YP_003301325.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] gi|268312913|gb|ACY99287.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] Length = 1059 Score = 258 bits (659), Expect = 4e-66, Method: Composition-based stats. Identities = 131/1064 (12%), Positives = 282/1064 (26%), Gaps = 133/1064 (12%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ +P V + +++A +ELR +++ Sbjct: 43 PGTGKTTTIVEAVVD-----RIERRGCDPE---RVLVLTFSRKAAEELRHRITGRL-RRT 93 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLY 131 T P+ + D + P + S ++LLE+ RL+ + Sbjct: 94 TRAPLALTFHGYAHALLRRDAIRRGQEPPRLLSAPEQLLEVRRLL--------EGEAADG 145 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 A+ L D + ++L L K W+ F+ Sbjct: 146 AVHWPRRLHEALTTRGFAEELRDFMLRAAERGYGPQELEELGYLKGRDDWVAIGRFMNRY 205 Query: 192 SKYW--TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + L L E + + + + PA L+ + Sbjct: 206 EQRFAVDPVLTYDYTDLIEAAAALLAEEEVRFQERAAYDAVFVDEYQDTDPAQEHLLKHL 265 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 A +V+ D + + + + L + R Sbjct: 266 AGDGRDLVVV--GDPDQSIYGFRGADVRGIMDFPHRFPTADGRPAPVVALRE----CRRM 319 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + S + R + P +V ++ AD+ + Sbjct: 320 SPAILEASRRIARR------------LPAGPSAAEHRALRPRQGAEDGEVHVVIADSPGQ 367 Query: 370 EAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTT 424 EA +A LR + + + L+ + ++ L + G+ + ++ PL Sbjct: 368 EAALVADELRRAHLLEGVPWSRMAVLVRSAVRQVPPLRRALAQAGVPVVVAGDELPLMGE 427 Query: 425 LHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 LL A + L+ PL L R K AL V + Sbjct: 428 PAVRPFLMLLRAALEKGYLTGEVAEELLTGPLGG--ADALTLRRLKRALREVETLSGGDR 485 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 L + + D + + + + T + Sbjct: 486 PVGELLVAALEDPRELLLVHP---------------KVRAPAERVAHLLQVARQGGTAEE 530 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 S + +L ++ F+ + Sbjct: 531 VLWNVWQASGLADAWLEQSAKGGARGAAADRDLDAVVVLFERAARFTDRMPQAG----PE 586 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I I G+T+ + + + IL ++ L ++ +I+ G+ EGVWP + Sbjct: 587 LFVAEISGEEIAGDTIADQAPEGEAVRILTAHRAKGLEWEVVIVAGVQEGVWPDLRLRGS 646 Query: 663 FLSRVMQ-------------------SDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRS 702 L + A K + + F +A R + + Sbjct: 647 LLGVEELIEHHAGSDLADLLAEGGRGTAAGASMAAKLLDEERRLFYVAVTRARRRLVVTA 706 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--- 759 + ++ SR+L L + K R L P +P Sbjct: 707 VGGDDTEERPSRFLNELAPGALERSELDEKTRWLSLPALVADLRAVVTDPSRPQPLRRAA 766 Query: 760 ------------------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + T S S+++ Sbjct: 767 AAHLARLARAGVRGAHPDSWYAITALSDPRPAFTADEQITISPSQVETFTTCGLRWLLAS 826 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + + G + H + + E I + Sbjct: 827 AVGARDGGPDEL----ATMGKVVHAVAE--LAGSHGDLAEEDVAQRLDEIWKELNFGSSW 880 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + K+ FL + + + + ++ + + + G DR + + Sbjct: 881 YSGKQREQA--AKMVDKFLAWHRANPNEL--VALEEDFQVEL--GRVVIRGRIDRAERDE 934 Query: 910 SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 G + D KT K + PQL + A+ G+ + + +++ + Sbjct: 935 HGRAVVVDIKT-SAQKVPDKELARHPQLGVYQYAVTLGALQRHGLVEPGGAVLVQVGKGS 993 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + ++ A++ K L+E+V GE F + Sbjct: 994 YENKAREQRQPPPAEDGDPDWPKKLVEVVATGMAGEV-FQARPN 1036 >gi|189184253|ref|YP_001938038.1| hypothetical protein OTT_1346 [Orientia tsutsugamushi str. Ikeda] gi|189181024|dbj|BAG40804.1| hypothetical protein OTT_1346 [Orientia tsutsugamushi str. Ikeda] Length = 946 Score = 258 bits (658), Expect = 5e-66, Method: Composition-based stats. Identities = 162/1012 (16%), Positives = 346/1012 (34%), Gaps = 118/1012 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L V + +P + QEL+ + K++ +LP + +L + F A S ++ Sbjct: 27 SLDKVKVILPYSQQCQELKKIIMLTARKEAMLLPDVLTLKQFIT-SFIAASNYSLSICCQ 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 +S+ ++ L+++I PI +A+ L+ L + +E++ Sbjct: 86 LSSYEQEAALSKIIQQHNQ----------------QPIRLGDALKLSGKLLQLFQQLESQ 129 Query: 163 EKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + L ++ +W FL A W++ + S L + Sbjct: 130 QINLTQLKDFVDQIDSSEYWQNTYKFLSFAYIEWSKLYSNSSCDSKSDIFSQLQDLLKSN 189 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 L +I+AG + + V + G ++LP + ++ S + Sbjct: 190 LSS---NIVILAGLLPTSKLELVIFKGVLSCKLGHVILP---PIYLEELCYSVKNSSDTL 243 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Y + +I +D+ L + FL ++ + Sbjct: 244 ------------YDFQYFVKSCNISLDDITYLAKAIALPTKNKPIQLSEFLGLPKLNLVS 291 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNL 398 NI D+ ++ +++ +EA +A + L + K ++T + Sbjct: 292 DADATKFNSNI---PIDIEYVKVNSQYDEAKLVAAMIHNYLIKANTQHNKILVVTTTPSF 348 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + + L+++ IN + + L + + L + + L+K Sbjct: 349 TTLLTMHLSKYQINYANLTNVDIKQLLEINFILVLADLVSSNFSISKFINLIK------- 401 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 ++ KN + +LK ++LD +D Sbjct: 402 ----TSLLTSSSSNKFENLILKNKFQQSELKQILLDL----------------TISKDDS 441 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 IL + L Y + C + +N+ +W Sbjct: 442 ELQKWATFILSALDDLWIYYNSNTILCD-----QLIIGLLQAAENLTEG------KIWQF 490 Query: 579 EEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + K +S + ++I + ++ +++T L+ + + ++ + I G + Sbjct: 491 QFSKRISDVLKEVIHIAKQFGNIDIRDFSNVLTELVTMIKFNYEHDYNANVVITGADSAI 550 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 LL+ D +I+ N WP N+ +NP+L++ + S L L + + + H+ Sbjct: 551 LLSADYIIIPEFNNDHWPGNSIQNPWLNQAIYSKLGLIERNAHYDRKQYILYTILQKAHV 610 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHY 754 S + T S+++ +L +L + ++ ++T + Sbjct: 611 SLINSQFTASSKTTDSQFILKLQLLAFKNPLIRIRVNDLKLQYNQNYTSNVVDNKSTTFQ 670 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P +T S ++I+ LI +PY YA+ IL+L + + G H Sbjct: 671 ILPGILLSSADIVKTISATDIEMLIRNPYGFYAKNILRLKPVILNDDQLTQAKFGDFIHK 730 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 +I + ++ + I + N +IW H+++ F+ + + Sbjct: 731 VIHRYTICYKDMEESKLINYFIDIGKQLIDCYNCSSFAKMIWLTKLHQLAEEFVRFDMER 790 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFA---------------DRIDLLKSGFVDITDYK 919 ++ KIF +G DRI+ ++G I D+K Sbjct: 791 KNEGFKIFSEQ-------------SGQISLNINNNALNIIAIADRIEYSQNGECYIIDFK 837 Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 TG P K+ Q+ I QL +E+ L G F + + YI++ + + Sbjct: 838 TGTVPNKKEVQQGIATQLIIESIILYRGGFKNLPAMMPNKIIYIKITS---TKPLLEFTE 894 Query: 980 KYSADELSEKSLKNLIEIVTLLQ-NGEQPFISHLRLSEKSNIQSEYDHLARV 1030 E+ +K L+E++ +G F S + + + + Y HLAR Sbjct: 895 ITVDQEMLDKHELGLVELLQYYIKDGGVFFPSPVD--KLAPKYNNYKHLARY 944 >gi|255002999|ref|ZP_05277963.1| hypothetical protein AmarPR_01685 [Anaplasma marginale str. Puerto Rico] Length = 937 Score = 257 bits (657), Expect = 6e-66, Method: Composition-based stats. Identities = 156/1057 (14%), Positives = 321/1057 (30%), Gaps = 176/1057 (16%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V T+ S F + + + + VP+ Q L E + Sbjct: 15 RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 58 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +T + + I + V + + + +LL LA+ + W Sbjct: 59 LTAHGANL--DILAFTSVD-------GCAATAYDASMGAAGQLLLLAQFVAQWSAAHRAD 109 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 L T + L +++ D Sbjct: 110 YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 151 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL +W + + L+ I++AG T L Sbjct: 152 FLCDLVPWWEQERKSRGLAPSGCGIGPLVEGFERS-----GKRIMVAGIVFGKVFTRFLR 206 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + + IVLP +D + W T+ +S H QY + +LL L + Sbjct: 207 LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKNLGVG 253 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R +V+RLG V + + + D+ LI + Sbjct: 254 RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 298 Query: 367 EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406 E EEA+ + L+ E + +A + ++ + L Sbjct: 299 EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 358 Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R + I A + S+++ + + + + + ++KHPL + G Sbjct: 359 FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGNAVQLLCMLKHPLVRLG 418 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + E+ +RG+ + E+ + Sbjct: 419 YDADEYRKLLAEFEIRVVRGHSAT----------------------GFEAIGSAIREEFQ 456 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 +++ I+P++ + +I + V CL+ + KL Sbjct: 457 QLEEFWRKVVEAISPMINVREGS-------TIGEIAAAHVQCLERL----MNKLDTSECT 505 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 +S+ FS + ++ + L+ + K + + Sbjct: 506 HALNKISTFFSLFDNYCMGVAVFSLTSYKEVCTLLVRAFFTIERNKLFGVNLAT------ 559 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 D +IL G +E + + L+ ++ L L E+Y G+ + + L Sbjct: 560 --RDAVILSGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 615 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 T+S + W++ L L LK R + Y + ++ Sbjct: 616 ITKSAESFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVSSNVVADPHRASA 667 Query: 759 PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 P P L+ + + S + LI++PY Y + ILK+ + H I Sbjct: 668 PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHSVRGFNIIAHKI 727 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + E + + +L+ +I F+ P+ ++W F +++ +F + + Sbjct: 728 LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFEEMARNFFAVDSER 785 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 +S+ + + S I + DR++ +K G V + K G P K + Sbjct: 786 RSAASRTESGKSFVWYV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 844 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 A + A ++ VA+ Y ++ + E+ + + Sbjct: 845 S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 894 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 E++ PF E + S Y+ L+R+ Sbjct: 895 KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 927 >gi|153806227|ref|ZP_01958895.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185] gi|149130904|gb|EDM22110.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185] Length = 953 Score = 257 bits (656), Expect = 8e-66, Method: Composition-based stats. Identities = 131/1067 (12%), Positives = 306/1067 (28%), Gaps = 170/1067 (15%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F + + L + L+ + P KRA + + Sbjct: 2 QSFLQLVAHDLYAKIGND-----------LSRTVLIFPNKRANLFFNEYLAGESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P S+ D+ ++ L + L +++ + Sbjct: 50 SPAAMSISDLFQKLSVQKTGDPIRL------------VCELYKVFKEETESQ-------- 89 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 + + + + L D ++ + L + LK Sbjct: 90 -----ETLDDFYFWGELLISDFDDVDKNLVDADKLFS------------NLQDLKSLMDD 132 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + E + ++ + E K + + ++ V Sbjct: 133 YEFLDKEQEEAIQQFFRNFSIERRTELKEKFIS---LWDKLGTIYHHYRKNLTEVGIAYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G + ++ + + L + + Sbjct: 190 GMLYRNVIEQ---------LNTDQLKYDKYIFVGFNVLNKVEKEFFRKLQKADKAIFYW- 239 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + Y + + ++ + + + L + K + I A E +A + Sbjct: 240 -DYDIFYTQQIKKHEAGEFINRNLKDFPNELPASYFDSLKKPKKIRYISASTENAQARFL 298 Query: 375 AIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 +R + +N+K++A++ + L V + N++I+ G PL+ T S + + Sbjct: 299 PEWIRTTFSSDNEKENAVVLCNETLLLPVLHSIPEEVKNVNITMGFPLAQTPVYSFINAA 358 Query: 434 LNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + ++ ++KHP + + + +E + N+ Sbjct: 359 MELQTNGYRFDTGRFTYETVSAILKHPYTRQLSTKADI------IERELTKTNRFYPLPS 412 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +LK + L D+++ I + T + Sbjct: 413 ELKQ----------------DEFLANLFTPRNGIKELCDYLIGLIKDISTLYRKEGEY-- 454 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEW 605 + L+ E ++ + + Sbjct: 455 ----------------------NDIFNQLYRESLFQSFLKINRLYSLIESGELNIQPHTL 492 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I++++ + E + + ++G LE+R L+F L++ LNEG PK ++ F+ Sbjct: 493 KRLISKVLTSSNIPFHGEPAIGMQVMGVLETRNLDFRNLVMLSLNEGQLPKTGGESSFIP 552 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLG 723 ++ + T E A+ F ++ + + SR++ +LLV G Sbjct: 553 YNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEG 612 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + + GQ + T++ + + + S S + ++ Sbjct: 613 PHEITREYLEAGQSPQSTPKIEIPKTQKILERLYHIYDVTNPKSLILSPSALNTYLDCRL 672 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ-- 837 Y R I L + D GT+FH + + ++ L++ Sbjct: 673 RFYFRYIAGLKTPEEVSAEIDSALFGTIFHRSAELAYTELTSNGQMIQKEDLERLLRNDV 732 Query: 838 ----IIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 +D F++E + +I + L ++ + + E + + Sbjct: 733 KLQGYVDQAFKEEFFKVKPEEKPEYNGVQLINSKVITSYLRQLLRNDLQ-YAPFEMVAME 791 Query: 885 IPAK------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP-- 935 + + L G DR+D K + I DYKTG NPK ++L P Sbjct: 792 QAVSEKITIQTDLGPFTVRLGGTIDRMD-AKESTLRIVDYKTGGNPKIPANIEQLFTPSE 850 Query: 936 -------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS- 987 Q L A+ + ++ L YI + + Sbjct: 851 TRPNYIFQTFLYASIMCRQQTLKVAPA----LLYIHRAASDSYSPVIEMGEPRQPKIPVN 906 Query: 988 ------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ K L ++ + + +PF + K ++ + Sbjct: 907 NFTFFEDEFRKRLQTLLEEIFSENEPFTQTEDI--KKCSYCDFKAIC 951 >gi|188995319|ref|YP_001929571.1| hypothetical protein PGN_1455 [Porphyromonas gingivalis ATCC 33277] gi|188594999|dbj|BAG33974.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 1007 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 140/1126 (12%), Positives = 289/1126 (25%), Gaps = 236/1126 (20%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF R++ + + +RA + I+ K Sbjct: 3 PFLRQIAAHYYKEYG-----------EDIHRLCFVFQGRRAGLFFKRHLSGISA-KPLFA 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI----LIWRNKLPDIIKDLY 131 P +L D++ P + R L L IW P + Sbjct: 51 PRTTNLKDLLLGLS------------PYKELDRTALLFELYNTYKEIWPQAEPFDQFIFW 98 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW---------- 181 + L + AK L + E + L + +W Sbjct: 99 GDIILKDFNEIDKHLVSAKALYSNLKDFREMENDFSFLSEKQIAAIRSFWESFSPASGQM 158 Query: 182 -----LLAADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM---------- 223 DF L + +RL + + + Sbjct: 159 ENGCQQSFLDFWKLLSPLYIRFNQRLADQGNGYHGMILRHTVDRLRQRETSVRELLSSAD 218 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + G PA ++ + D + + N + Sbjct: 219 RGGNADPDKYVFVGLFALSPAEEYILVRI-KAEGICDFCFDDDLSLLHSAGNLTGTILDH 277 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + Sbjct: 278 NKEIF------------------------------------------------GKQTPWQ 289 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITAD 395 + K D+ +I +E +A + + E +A+I D Sbjct: 290 ESSENGQTSSLEDKPAPDIRIIRTASEIVQAKLLPQLIEELYPEGYSDKEGIQTAIILPD 349 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--------LNDFMAIA 447 + V L I+++ G PLS + S + + + A+ Sbjct: 350 TGMLMPVLNSLAETVGRINVTMGYPLSQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVL 409 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+ L + N + +L +L+ R P Sbjct: 410 DLLNSVLLTPLLTDHSRDLLSNREVTKQYYVPEERLWGDELTNLLFSR----------PD 459 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 +L + L + + + L Sbjct: 460 SGQQLLDRLFLLLEKIAESM----------------------------LFQPADSEYDQS 491 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 E L + + + ++E + + ++ L+ G ++ + E Sbjct: 492 EETNNMELEQIYHYRNILNRLRGLVE-SYAMDMSVRSAALLLQGLVSGVSIPFEGEPLVG 550 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L I+G ++R L+F LI+ +NEG P + + ++ L E ++D Sbjct: 551 LQIMGIDQTRSLDFKHLIILSVNEGKLPSRVYETTMIPYTLRRGYGLPVNEVNEATQSYD 610 Query: 688 FEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVL---------------GGTDFFDN 730 F + + + SR+++++ L Sbjct: 611 FFRLIQRAESVTMLYDARSDQLGGGEESRYIRQMRFLFDMPLKVQELHLTGSLPHSPAIC 670 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 ++K G+ R L+Y ++ E + S S I + P Y + Sbjct: 671 VRKEGEVLTKLHRFLEYDNEESL--------DPEERLSALSASSINTYVACPLRFYFENV 722 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----------RINKNTPEINHLMKQIID 840 + + D GT+ H + + K +++ N + +I+ Sbjct: 723 RGIREENASDELMAANDFGTVVHRSMELIYKPCCGGGIVSSDILSRWLDPKNATIARIVR 782 Query: 841 SHFEKENLPPH--------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI- 891 + +E L ++ ++ + K LEH++ + I K + Sbjct: 783 QAYTEEYLRSANTQGALSGLNHLYCIMIEKYVRRILEHDKSLAP-FRYIDSERRVKGSFS 841 Query: 892 --ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--------------KETAQKLID- 934 + L G DRID L I DYK+GD ++ + Sbjct: 842 LSNGSRVRLHGIIDRIDELNEECRRIVDYKSGDTTTELGSWDLMFQHPIAGKSKKHPTAI 901 Query: 935 PQLSLEAAALK-----AGSFSQIDCRKV--ANLFYIRLKQKFKIDCITND-----KKKYS 982 Q L A K G S++ + K+ + + + ++ Sbjct: 902 AQTLLYALMAKMQMENEGEGSELPLCPTIYGFKELYKQKEDYTGVVVLKEVGKAIEQITD 961 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 D++ E + L + L + + PF + ++ + L Sbjct: 962 FDQICEMFEERLRTCLDELFDPDIPFTETEDI--RTCSYCPFASLC 1005 >gi|298387755|ref|ZP_06997306.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298259611|gb|EFI02484.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 954 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 144/1074 (13%), Positives = 297/1074 (27%), Gaps = 183/1074 (17%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F + + L + L+ + P KRA + + Sbjct: 2 QSFLQLVAHDLYAKIGND-----------LSRTVLVFPNKRANLFFNEHLAGESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDL 130 P S+ D+ + L + L ++R + Sbjct: 50 SPAAMSISDLFRKLSVQKAGDPIRL------------VCELYKVFREETESQETLDDFYF 97 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + E +S + A L + ++ +E L + E F + Sbjct: 98 WGELLISDFDDVDKNLVDADKLFSNLQDLKNLMDDYEFLDKEQEE-------AIQQFFQN 150 Query: 191 ASKYWTERLVELN---ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 S L E AE I L Sbjct: 151 FSIERRTVLKEKFISLWDKLGTIYHRYRENLAEL----------------GIAYEGMLYR 194 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 V L I+ + T + D K+ Sbjct: 195 NVIEQ------LDTTRLKYDKYIFVGFNVLNKVETKFFQLLQDADKAMFYWDYDLFYTKQ 248 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 G R++ + + LP + + ++ I A E Sbjct: 249 IVKHEAGE----FINRNLKLFPNELPESCF-------------DTLRKPKNIRYISASTE 291 Query: 368 REEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 +A + ++ +L +K++A++ + L V + + N++I+ G PL+ T Sbjct: 292 NAQARFLPEWVQSTLSTANEEKENAVVLCNEALLLPVLHSIPQEVKNVNITMGFPLAQTP 351 Query: 426 HSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 S + + + + ++ ++KHP + R Sbjct: 352 VYSFINAAMELQTNGYRTATGRFTYETVSAILKHPYTRQLSINAEPLE----------RE 401 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + L S + + L D++ + I + Sbjct: 402 LTKTNRFYPLPSELKM------------DDFLIKLFTPRSGIKELCDYLTELIKDISLLY 449 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ + T + +IET + Sbjct: 450 REESEYNDIF----------------------NQLYRESLFKSYTTINRLYSLIET-GEL 486 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++++++ + E + + ++G LE+R L+F +IL LNEG PK+ Sbjct: 487 NVRTDTLRRLVSKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNIILLSLNEGQLPKSG 546 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWL 716 + F+ ++ + T E A+ F ++ + N SR++ Sbjct: 547 GDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSNGLNRGEESRFM 606 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 +LLV G + GQ T T + + + Q S S + Sbjct: 607 LQLLVEGPHKITREYLEAGQSPQGTTDISIEKTPEVFERLRCSYDCSNPQSYILSPSALN 666 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEIN 832 ++ Y R + +L + D GT+FH ++ Sbjct: 667 AYLDCRLKFYYRYVARLKAPDEVSAEIDSALFGTIFHLSAQLAYTDLTANRKIIQKEDLE 726 Query: 833 HLMKQII-----------DSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 L++ + F +++ + +I + L ++ + + Sbjct: 727 RLLRNEVKLQNYVDLAFKQELFKVPADEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAP 785 Query: 878 IEKIFVNIPA--KMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQ 930 E + + P K+ I I + L G DR+D K + I DYKTG +P + Sbjct: 786 FEMVAMEKPVAEKITIQTGQGPITLRLGGTIDRMD-AKDTTLRIVDYKTGGSPKTPANIE 844 Query: 931 KLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 +L P Q L AA + ++ +L YI + + Sbjct: 845 QLFTPSETRPNYIFQTFLYAAIMSRQQSLKVAP----SLLYIHRAASESYSPVIEMGEPR 900 Query: 982 SADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ + L ++ + + +PF K ++ + Sbjct: 901 QPKIPVNNFAFFEDEFRERLQRLLKEIFDENEPFT--QTEDTKKCAYCDFKAIC 952 >gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847199|gb|ADH69219.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1060 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 130/1022 (12%), Positives = 292/1022 (28%), Gaps = 109/1022 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 + ++V+ + +P + V + +++A QELR +++T P+ + Sbjct: 42 IVESVVDRIDHRGTDP---SRVLVLTFSRKAAQELRERITARL-RRTTREPLALTFHSYA 97 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + +L P RLL ++ R L D + P Sbjct: 98 YALIRREFQRMGDLPP------RLLSGPEQLMEVRELLRGEALDGAADWPER-LRPALET 150 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 A+ L D + + ++L AL ++ W+ AA FL + + V Sbjct: 151 RGFAEELRDFLMRAQERGMGPDELAALGRDRDRDDWVAAAGFLDRYTGRFDIAPVPTLNY 210 Query: 206 SPVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + + L + + + + PA L+ +A +G ++ D Sbjct: 211 AELVRVAANLLSDPGVRERERAAHEAVFVDEYQDTDPAQEELLRALAG--DGRDLVAVGD 268 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + + L R + L + S + R Sbjct: 269 PDQSIYAFRGAEVRGILDFPRRFPTA----RRTEAPVVALRTCRRSGRALLSASRGLTRR 324 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 LP S + + + P +V ++ AD+ +EA IA LR + Sbjct: 325 --------LPAVASARGHVNEHRDLTPAEGVPDGEVRVLLADSAAQEAAVIADTLRRAHL 376 Query: 384 ENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN--A 436 + + L+ + ++ LT + + + A P++ + +L+ Sbjct: 377 VDGVPWSDMAVLVRSSTRQLPVLRRALTAASVPVAVGADDLPVAAEPIVRPMLALIRYGL 436 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 D A L+ P + + + ++ + Sbjct: 437 APAELDEDAARELLTSPFGEADTVRLRRLVRALRRLDLDRAHDGGAHGGAPEGDASREGA 496 Query: 497 ATQK------------NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 ++ + P + + E A + + + Sbjct: 497 REERSGAYRPSAQLLVDALRDPAELTLVDPEIAAPATRVAQALRTVRDLNARGADAEQVL 556 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S + +L ++ + + GS A Sbjct: 557 WELWRDSGLADRLLRASLAGGRRGAAADRDLDAVVALFESAARYCDRLPPGS----PAGF 612 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 D+ + I G+++ + + + IL S+ L + +++ G EG WP + L Sbjct: 613 LEDLAAQEIPGDSLAERAPEGEAVRILTAHRSKGLEWGLVVVAGAQEGDWPDLRLRGSLL 672 Query: 665 SRVMQSDLNLKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 D ++ +A+ + + R + ++ + SR+ Sbjct: 673 GVEELVDTDVHSADSSGAALASKLLDEERRLFYVALTRARRTLVVTAVGGEDTDERPSRF 732 Query: 716 LQR------------LLVLGGTDFFDNLKK-----------RGQCYLDWTRKLDYTTK-Q 751 L L L +L+ R R + + Sbjct: 733 LNEMGVGEPEPVSTGLRWLSLPSLVADLRSVVTDPGAPEPLREAAATHLARLAEEGVRGA 792 Query: 752 PHYKRPKPFPPLEAQP-------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + P + +P S S+++ N R Sbjct: 793 DPAEWYALTPFTDDRPLAEEEDTIRVSPSQVESFTNCQLRWLLERAAGA----------S 842 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 D + ++ + +TP+ I + + R + Sbjct: 843 SGDSASALGTVVHAVAVLVAQGSTPDEISGRMDEIWADLDFGGPWQARAQ--RDRADTMV 900 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 ++ E + E + ++ + GI +TG DR++ G + D KTG N Sbjct: 901 RKLVDWEAA--NDRELVVTEEGFRVDV--GGIEITGRVDRLERDDQGRAVVVDIKTGKN- 955 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 + PQL + A+ G+F+++ + +++ +K + Sbjct: 956 --KADDLARHPQLGVYQMAVLKGAFAKLGLTEPGGAALVQVGEKIQRAREQPQPPLSEDP 1013 Query: 985 EL 986 + Sbjct: 1014 DP 1015 >gi|253568130|ref|ZP_04845541.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842203|gb|EES70283.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 954 Score = 256 bits (653), Expect = 2e-65, Method: Composition-based stats. Identities = 140/1046 (13%), Positives = 288/1046 (27%), Gaps = 172/1046 (16%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + + P S+ D+ + L Sbjct: 19 DLSRTVLVFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFRKLSVQKAGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNK----LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 + L ++R + + E +S + A L + Sbjct: 75 ---------VCELYKVFREETESQETLDDFYFWGELLISDFDDVDKNLVDADKLFSNLQD 125 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---ASSPVGYQIALM 215 ++ +E L + E F + S L E Sbjct: 126 LKNLMDDYEFLDKEQEE-------AIQQFFQNFSIERRTVLKEKFISLWDKLGTIYHRYR 178 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 AE I L V L I+ Sbjct: 179 ENLAEL----------------GIAYEGMLYRNVIEQ------LDTTRLKYDKYIFVGFN 216 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + T + D K+ G N R P + Sbjct: 217 VLNKVETKFFQLLQDADKAMFYWDYDLFYTKQIAKHEAGEFINRNLKR--------FPNE 268 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DENKKKSALIT 393 + + + ++ I A E +A + ++ +L +K++A++ Sbjct: 269 LPESCFDTLRKP---------KNIRYISASTENAQARFLPEWVQSTLSTANEEKENAVVL 319 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAI 446 + L V + + N++I+ G PL+ T S + + + + + Sbjct: 320 CNEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRTATGRFTYETV 379 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + ++KHP + R + L S + Sbjct: 380 SAILKHPYTRQLSINAEPLE----------RELTKTNRFYPLPSELKM------------ 417 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L D++ + I + ++ Sbjct: 418 DDFLIKLFTPRSGIKELCDYLTELIKDISLLYREESEYNDIF------------------ 459 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + T + +IET + ++++++ + E + Sbjct: 460 ----NQLYRESLFKSYTTINRLYSLIET-GELNVRTDTLRRLVSKVLTASNIPFHGEPAI 514 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F +IL LNEG PK+ + F+ ++ + T E A+ Sbjct: 515 GMQVMGVLETRNLDFRNIILLSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 574 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + N SR++ +LLV G + GQ T Sbjct: 575 YFYRLIQRAENITLLYNTSSNGLNRGEESRFMLQLLVEGPHKITREYLEAGQSPQGTTDI 634 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + Q S S + ++ Y R + +L + D Sbjct: 635 SIEKTPEVFERLRCSYDCSNPQSYILSPSALNAYLDCRLKFYYRYVARLKAPDEVSAEID 694 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF-------------------EK 845 GT+FH +++++ + ++ Sbjct: 695 SALFGTIFHLSAQLAYTDLTANRKIIQKEELERLLRNEVKLQNYVDLAFKQELFKVPADE 754 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI----ESIGIHLT 899 + + +I + L ++ + + E + + P K+ I I L Sbjct: 755 KPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAPFEMVAMEKPVAEKITIQTGQGPITFRLG 813 Query: 900 GFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +P ++L P Q L AA + Sbjct: 814 GTIDRMD-AKDTTLRIVDYKTGGSPKTPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 872 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 ++ +L YI + + ++ + L ++ + Sbjct: 873 LKVAP----SLLYIHRAASESYSPVIEMGEPRQPKIPVNNFAFFEDEFRERLQRLLKEIF 928 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + +PF K ++ + Sbjct: 929 DENEPFT--QTEDTKKCAYCDFKAIC 952 >gi|282858263|ref|ZP_06267449.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|282588972|gb|EFB94091.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] Length = 964 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 144/1078 (13%), Positives = 307/1078 (28%), Gaps = 191/1078 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LLN P LA + + P KRA L E I+ P Sbjct: 4 FLSYVAKDLLNKY-----------PNGLARIAVVFPNKRAALFLNQEIARISDS-PVWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYN----LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 ++ + E+ T + S L+ +I + E W L D+ Sbjct: 52 AYITISEFFREQSTLTVSDSIKNICILHKVYMDITKKTETLDQFYGWGELLLADFDDIDK 111 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 A+ + ++ + K+ E L L E+ Sbjct: 112 NLAP------------AEKVFGLL----SANKEMESLDYLTPEQVAE-----------LQ 144 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 K +T + + +L + E K R + T Sbjct: 145 KVFTNINTDED---------SLRKRFHEFWNKLF----------DIYTEYKRRLRTQGMA 185 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 G + ++ + + Q +L FL+ + Sbjct: 186 YEGMLYRDVIENN----------NLTLPYDRYIFIGFNVLQQVEQRLFTFLNEADKAAFY 235 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + D N+ D++ I + E +A Sbjct: 236 WDYDNYYLKTGREAGRYIQRWLERFPNELKDNDHTIFSNL-DRDKDISFIASPTENMQAR 294 Query: 373 SIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 I L+ + + +K+A++ D NL + V + ++++ G PL +L SS +T Sbjct: 295 YITQWLKENDRYLDGRKTAIVLCDENLLQTVIHCIPTEVETLNVTTGYPLQQSLISSFVT 354 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 ++ E+ L + +L Sbjct: 355 QIIKLQVDGYS----------------LTEQRFRLRYANRVLRHPYAKYVWSNAEELLQQ 398 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + ++ +V D + + V+ + I + + S+ Sbjct: 399 I-----NEEKQFYVLWEGMDYHPHDAQNMLAFVEWLANIIRQVGINGRTQADPLFQESVF 453 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 L + + + E + + I + ++ + Sbjct: 454 RMYTLLSKFVDLMTVQEDGSYY------------------------LDHDIIIFRRLLVQ 489 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 L + +V E + + I+G LE+R L+FD +++ NEG PK F+ ++ Sbjct: 490 LTNATSVPFHGEPAQGVQIMGVLETRNLDFDHVLILSCNEGNMPKGVDDASFIPHAIRHA 549 Query: 672 LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFD 729 L T I ++ F + + SR++ + +V + Sbjct: 550 FELTTVNNKISIFSYYFHRLIQRASDVTILYNNSTQGIKTGEMSRFMLQFMVE-----WT 604 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 +++ Y+ + + + + +S + I I P Y + Sbjct: 605 KTERKIHRYVLKAGQEQHNFIAEPITKDRRVMAKLLHISKFSPTAINTFIACPVKFYYKY 664 Query: 790 ILKLDFIPHFKKD-PDRTDRGTLFHNIITELIKKRINKNTPEIN---------HLMKQII 839 ++ +D +D D G +FH + K +++ II Sbjct: 665 VVGIDTQDIVDEDSIDNRVFGNIFHKAAELMYKDIFKGEEVSAATIGTILAKPNMLNSII 724 Query: 840 DSHFEKENLPP------------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF----V 883 D E + ++ + + K L ++ + I+ + V Sbjct: 725 DQAIASELFNRKDFLKGNKLNLNGLQLLNKEVIKKYLLQLLRLDQA-VAPIKVLAHEFDV 783 Query: 884 NIPAKMAIESIGI--HLTGFADRIDL----LKS----GFVDITDYKTGDNPKK--ETAQK 931 ++ I + G DR+D+ L + + DYKTG K Sbjct: 784 EDDVEVNIAGKLYKKRVGGRVDRLDMATYALGDHTTIKRLRVVDYKTGRAEAKPMPDIPS 843 Query: 932 LIDPQLS-----------LEAAALKAGSF--------SQIDCRK---VANLFYIRLKQKF 969 + P+L L + + + + L +I+ K Sbjct: 844 IFSPELLDKKSDYVMQSMLYSLLMAENKVKIQNGILPANFNPHHLPVTPALLFIQYASKK 903 Query: 970 KIDCIT--NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 I + ++ + ++ +++L ++ L + +PF L K + Sbjct: 904 DYSPIVCIDKEEVTDVSKYHKEFMESLASVLESLYDETKPFTPTDNL--KLCGYCPFK 959 >gi|29346467|ref|NP_809970.1| hypothetical protein BT_1057 [Bacteroides thetaiotaomicron VPI-5482] gi|29338363|gb|AAO76164.1| putative exonuclease [Bacteroides thetaiotaomicron VPI-5482] Length = 954 Score = 255 bits (650), Expect = 4e-65, Method: Composition-based stats. Identities = 144/1074 (13%), Positives = 297/1074 (27%), Gaps = 183/1074 (17%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F + + L + L+ + P KRA + + Sbjct: 2 QSFLQLVAHDLYAKIGND-----------LSRTVLVFPNKRANLFFNEHLAGESD-QPIW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK----LPDIIKDL 130 P S+ D+ + L + L ++R + Sbjct: 50 SPAAMSISDLFRKLSVQKAGDPIRL------------VCELYKVFREETESQETLDDFYF 97 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + E +S + A L + ++ +E L + E F + Sbjct: 98 WGELLISDFDDVDKNLVDANKLFSNLQDLKNLMDDYEFLDKEQEE-------AIQQFFQN 150 Query: 191 ASKYWTERLVELN---ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 S L E AE I L Sbjct: 151 FSIERRTVLKEKFISLWDKLGTIYHRYRENLAEL----------------GIAYEGMLYR 194 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 V L I+ + T + D K+ Sbjct: 195 NVIEQ------LDTTRLKYDKYIFVGFNVLNKVETKFFQLLQDADKAMFYWDYDLFYTKQ 248 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 G R++ + + LP + + ++ I A E Sbjct: 249 IVKHEAGE----FINRNLKLFPNELPESCF-------------DTLRKPKNIRYISASTE 291 Query: 368 REEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 +A + ++ +L +K++A++ + L V + + N++I+ G PL+ T Sbjct: 292 NAQARFLPEWVQSTLSTANEEKENAVVLCNEALLLPVLHSIPQEVENVNITMGFPLAQTP 351 Query: 426 HSSILTSLLNAIFK-------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 S + + + + ++ ++KHP + R Sbjct: 352 VYSFINAAMELQTNGYRTATGRFTYETVSAILKHPYTRQLSINAEPLE----------RE 401 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + L S + + L D++ + I + Sbjct: 402 LTKTNRFYPLPSELKM------------DDFLIKLFTPRSGIKELCDYLTELIKDISLLY 449 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ + T + +IET + Sbjct: 450 REESEYNDIF----------------------NQLYRESLFKSYTTINRLYSLIET-GEL 486 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++++++ + E + + ++G LE+R L+F +IL LNEG PK+ Sbjct: 487 NVRTDTLRRLVSKVLTASNIPFHGEPAIGMQVMGVLETRNLDFRNIILLSLNEGQLPKSG 546 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWL 716 + F+ ++ + T E A+ F ++ + N SR++ Sbjct: 547 GDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLLYNTSSNGLNRGEESRFM 606 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 +LLV G + GQ T T + + + Q S S + Sbjct: 607 LQLLVEGPHKITREYLEAGQSPQGTTDISIEKTPEVFERLRCSYDCSNPQSYILSPSALN 666 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN----TPEIN 832 ++ Y R + +L + D GT+FH ++ Sbjct: 667 AYLDCRLKFYYRYVARLKAPDEVSAEIDSALFGTIFHLSAQLAYTDLTANRKIIQKEDLE 726 Query: 833 HLMKQII-----------DSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 L++ + F +++ + +I + L ++ + + Sbjct: 727 RLLRNEVKLQNYVDLAFKQELFKVPADEKPEYNGVQLINSKVIVSYLKQLLRNDLQ-YAP 785 Query: 878 IEKIFVNIPA--KMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQ 930 E + + P K+ I I + L G DR+D K + I DYKTG +P + Sbjct: 786 FEMVAMEKPVAEKITIQTGQGPITLRLGGTIDRMD-AKDTTLRIVDYKTGGSPKTPANIE 844 Query: 931 KLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 +L P Q L AA + ++ +L YI + + Sbjct: 845 QLFTPSETRPNYIFQTFLYAAIMSRQQSLKVAP----SLLYIHRAASESYSPVIEMGEPR 900 Query: 982 SADELS-------EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ + L ++ + + +PF K ++ + Sbjct: 901 QPKIPVNNFAFFEDEFRERLQRLLKEIFDENEPFT--QTEDTKKCAYCDFKAIC 952 >gi|260170421|ref|ZP_05756833.1| hypothetical protein BacD2_01003 [Bacteroides sp. D2] gi|315918777|ref|ZP_07915017.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692652|gb|EFS29487.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 959 Score = 255 bits (650), Expect = 4e-65, Method: Composition-based stats. Identities = 138/1046 (13%), Positives = 299/1046 (28%), Gaps = 167/1046 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + + P S+ D+ ++ L Sbjct: 19 DLSRTALIFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 75 ---------VCELYKVFKEETQSQ-------------ETLDDFYFWGELLISDFDDVDKN 112 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + LK + L+ Q E Sbjct: 113 MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156 Query: 223 MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + I + G+I ++ + G + ++ + Sbjct: 157 TELKEKFISLWDKLGTIYHRYRTNLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 L + + + Y + + ++ + Sbjct: 208 DKYIFVGFNVLNKVENDFFSKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394 + L N K + I A E +A + ++ D++ + + A++ Sbjct: 266 PNELPENFFNSFKEPKKIRYISASTENAQARFLPEWIKAMTDDHSQIAEEKEKENAVVLC 325 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447 + L V + + N++I+ G PL+ T S + + + + A++ Sbjct: 326 NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVS 385 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++KHP + LS LE + N+ +LK Sbjct: 386 AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L D++++ I + T + Sbjct: 424 DFLTTLFTPRNGIKELCDYLIELIKYISTIYRKEGEY----------------------- 460 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L+ E ++ + + + +IT+++ + E + Sbjct: 461 -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + T E A+ Sbjct: 520 GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + + SR++ +LLV G D + GQ Sbjct: 580 YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + + S S + ++ Y R + L + D Sbjct: 640 RVEKTPEVLRRLYRAYDSTHPNSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699 Query: 805 RTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ------IIDSHFEKENL------ 848 GT+FH ++ L++ +D F++E Sbjct: 700 SALFGTIFHLSAQSAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEE 759 Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899 I +I + L ++ + + E + + ++ I L Sbjct: 760 KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +PK ++L P Q L AA + Sbjct: 819 GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 + L YI + + ++ + L ++ + Sbjct: 878 LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIF 933 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + E+PF K ++ + Sbjct: 934 SEEEPFT--QTEDTKKCSYCDFKAIC 957 >gi|313675648|ref|YP_004053644.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126] gi|312942346|gb|ADR21536.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126] Length = 941 Score = 254 bits (648), Expect = 7e-65, Method: Composition-based stats. Identities = 148/1059 (13%), Positives = 295/1059 (27%), Gaps = 171/1059 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F E+ L + +++ T+ P +RA + P Sbjct: 5 FLEELAHTLYTQLGKD-----------ISNYTVIFPNRRAGLFFNRAL-RKLINEPIWAP 52 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL----LELARLILIWRNKLPDIIKDLYP 132 ++ D V +K + +L + + + E W + L D+ Sbjct: 53 EAMAIEDFVRQKSNYAVPDQLSLVFSLHEVFQKHAPFKEDFEQFYFWGDMLVKDFNDVDH 112 Query: 133 ESPLSLP--ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + P + LA D ++ EK W+ A K + + + L Sbjct: 113 YMADARPLFANLLEWKKLADTDFLTEDQVQLIEKFWKSFEA-KPKDAQEKFARNWNILFP 171 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + ++L N + ++ + +I AG ++S Sbjct: 172 VYQDFKQKLKAENQAYNGMLYRDYAEKLKAGELQISVH-LIFAGFNALTKTEEIIIS--E 228 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 GA + +D + Sbjct: 229 AVKQGAQIYWDMDAYY-------------------------------------------- 244 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 F + E I K + + E + Sbjct: 245 -------AAPENTMQEAGNFFREYSKHPILGKTFPEVLPDRIIKETPQINITEVKGNIAQ 297 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A + L + +K+A+I D +L V L ++++ G PL ++ Sbjct: 298 AKFLGQLLSEQKIDQPEKTAIILGDESLLFPVLYALPEAIQKVNVTMGYPLRFASIYQLM 357 Query: 431 TSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 L + + ++KHP + ++ + +R Sbjct: 358 NICLYLQKNKREETGKITFNHRDVLKILKHPFVGNLLGDVAKTKIHHIESNNIIR----- 412 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + S EE+ L +L D L T + Sbjct: 413 --------------------LELRDLYSENEEENTLLEILFNDGSDNYFLYLRTILQYVH 452 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + ++ + + L + + + I Sbjct: 453 QEQIESTEQEFISEIYKQINQLEQIISEFKLVLDINAFIRLFNRIIQSIR---------- 502 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 V E + I+G LESR L+F+ + ++E +P Sbjct: 503 ---------------VPFSGEPLEGIQIMGVLESRNLDFENIYFLSMSEDNFPGGANNQS 547 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLL 720 F+ ++ L T E+ A+ F + + S SR+L +L Sbjct: 548 FIPYNIRKAYGLPTLEQRDAIYAYLFNRLLQRSNQLHLMYNSDNSGGKGGEPSRYLLQLQ 607 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 G + + T ++ E + S S +K +N Sbjct: 608 YELGIQTQKVKLQSLNQDPQAASPVSITVEKNEAIWQILKSYNEKRF--LSASALKTYLN 665 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----INHLM 835 Y R I L +D D D G + H+++ +L +N+ + + Sbjct: 666 CRLQFYFRYIAGLKERDEVSEDLDAADFGNILHHVMEKLYGSVLNQLLDANKIILLKKDI 725 Query: 836 KQIIDSHFEK---------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNI 885 + I F + E +II R + ++ L ++ +I ++K+ Sbjct: 726 DKFIKEEFAELYGKKEKVSEFEFEGRNIIIRDVVKRMVVQILNYDAQIAPFTVKKVEGEY 785 Query: 886 PAKMAIESIG-IHLTGFADRIDLLKSGFVDITDYKTG----DNPKKETA-------QKLI 933 +A+E I L G DR+D + + + DYK+G P E+ + Sbjct: 786 EFAIALEDGQKIRLQGSIDRLDEQGT-SIRVIDYKSGGDEVKFPDIESLFDRNHKDRNGA 844 Query: 934 DPQLSLEAAA-LKAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEK 989 Q + + +K+ F + Y F N K+ +A+ L E+ Sbjct: 845 AMQTLIYSYLFIKSDEFEEGKNVVPG--LYNGKGIFNSDFSEKLKLNKKELNNAEVLMEE 902 Query: 990 SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K L ++T + EQ F ++ Y + Sbjct: 903 FEKGLKNLLTEIFISEQAF--EQTEKLENCTYCAYKTIC 939 >gi|313203010|ref|YP_004041667.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4] gi|312442326|gb|ADQ78682.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4] Length = 972 Score = 254 bits (647), Expect = 7e-65, Method: Composition-based stats. Identities = 141/1044 (13%), Positives = 304/1044 (29%), Gaps = 156/1044 (14%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 +++++ P +RA + +I K P I ++ + Sbjct: 18 ESISNLSFVFPNRRAGLFFQRYISQIAA-KPIFSPEILTINECFSMASQWQTAD------ 70 Query: 102 PVSNIQRLLELARLILIWRN----KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 RL L RL I+ + E LS A+ L I Sbjct: 71 ------RLSNLFRLYRIYIEQSGSDESFDSFVFWGEMLLSDFDDVDKYRVDARQLFTNIT 124 Query: 158 IIETEEKKWEDLHALKNEKYGMWWL---------------LAADFLKIASKYWTERLVEL 202 ++ ++ + + E +W L + + L+ Sbjct: 125 ELKQIDQMFNIFTEKQVEAIRQFWSNFVPVTEGKSQEDFIATWKILLPVYEQFRAELIAE 184 Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 N ++ + + + + G P LM+ + A Sbjct: 185 NTATEGMICRDVADRLRAKEPVSELEEKQFVFIGFNALNPCERTLMAELKKRGQ-ADFYW 243 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + + +S + + + Sbjct: 244 DYD---------AAELRDADNQASRFYAENIHLFPSK-------------YEIDADVESL 281 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + + + + + + LI D Sbjct: 282 QEKEIELIAVPSAVGQTKQVYSILNKLYPTENDDKDKS-QLITTDY-------------Q 327 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 N +A++ D +L + L ++++ G PL +T S ++ + ++ Sbjct: 328 LPTTNWINTAVVLPDESLLVPLLHSLPAQIGKVNVTMGFPLKSTPVSGLIEHIFELQCRM 387 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + ++ + + + + +N++ +D L + + Sbjct: 388 RTSGDRISFYHQTVSNILNHQYIALLCGDEANRITHQMAENNWIYIDADELKRNELLATI 447 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + ++L + L + N + Sbjct: 448 FVPQTDT-------------QTFLPYLLHILRTLQNGWQQASGEEHNYQL---------- 484 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + + T++ + + + + + + +L G T+ Sbjct: 485 ------------ECDFLYQYYVTINRMSDIMKAKPMDVGMSMETLVRLTRQLTSGITIPF 532 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 E L ++G LE+R L+F+ LI+ NEGV+P ++ N F+ ++ L T E Sbjct: 533 IGEPLDGLQVMGVLETRGLDFENLIITSFNEGVFPAKSSNNSFIPYNLRRGFELPTTEHQ 592 Query: 681 IGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCY 738 A++F + + + R + T SR++ +L + Sbjct: 593 DAITAYNFYRLIHRAKRIYFLYDSRTEGMQTGEVSRFMHQLHYHYDVKVQKKTVSFDIGF 652 Query: 739 -LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 ++D T ++ F E S S I I+ P Y ++ ++ Sbjct: 653 GSPQAIQIDKTAAV--MEKLLRFTSSEKYSPALSASSINTYIDCPLQFYLTKVENVEQTD 710 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQII-----------DSHFE 844 + + GTLFH ++ L + + + + L+K + +F+ Sbjct: 711 EVAETVEANMFGTLFHKVMENLYLPYKGQLMQSDDFDSLIKNTLKIDLEINSAFSREYFK 770 Query: 845 KEN----LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI----GI 896 K+N +++ + K L+ ++K + + I + G+ Sbjct: 771 KKNNAVVQLEGNNLLIASVLRKYILQVLKIDQK-YAPFKYIGSEEKFTIKYPIQNTKTGV 829 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKL-------IDPQLSLEAAALK 945 ++ GF DRID K G + I DYKTG + + Q L + Sbjct: 830 NIKGFIDRIDE-KEGRLRILDYKTGSGKLDFRNLDEVFEHDKDNRPKFVLQTFLYCILYQ 888 Query: 946 -AGSFSQIDCRKVANLFYIRLKQKFKIDCIT----NDKKKYSADELSEKSLKNLIEIVTL 1000 S + +FYIR K D + + +K ++ +E K+L + Sbjct: 889 DENKVSNLTP----GIFYIRDLFKEDFDTVLINKESKEKVTDFEQYNEAFRKHLTTCLDE 944 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEY 1024 + N E PF L K Y Sbjct: 945 MFNPEVPFTQTSNL--KVCQYCPY 966 >gi|288800137|ref|ZP_06405596.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333385|gb|EFC71864.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 958 Score = 252 bits (644), Expect = 2e-64, Method: Composition-based stats. Identities = 146/1073 (13%), Positives = 301/1073 (28%), Gaps = 184/1073 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + ++ LA + I P KRA + K P Sbjct: 4 FLEAVAKDIIAKYGTN-----------LADIAIVFPNKRAALFMNEYLAR-IANKPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + L + L + Sbjct: 52 SYLTISDLFYRNTDLVVGDQIKL------------VCDLHRSFTECT------------- 86 Query: 137 SLPISPANAIWLAKNLADIIDI----IETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 L + + + L D + K + ++ L + +I Sbjct: 87 GLDETLDHFFNWGQLLLSDFDDVDKNMAEASKVFANIQNLHELDDISYLSEQQK--EIIK 144 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 K++ N S + + + ++ E + + G + + V Sbjct: 145 KFFINFKDNHN--SELKQRFLNLWSKLEDIYNNFNARLKQQGIS----YEGAIYREVIEQ 198 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 N LD ++ Q +L + + + + Sbjct: 199 KN-------LDLPHKHYLFVG---------------FNLLQKVEQELFNIIKKEGKAKFY 236 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 D + I N K D+ I A +A Sbjct: 237 WDFDKYYTINNQQEAGYYIKQYLAIYPNELDNSNDSIYNCFKKEKDITYISATTNNIQAR 296 Query: 373 SIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 +IA L+ + + K + ++ D L V L ++I+ G PL T SS++ Sbjct: 297 NIADWLQQNDRIKAGKDTVIVLCDETLLPTVLHCLPEEVDKVNITMGFPLQQTHISSLVK 356 Query: 432 SLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 SL+ + ++ HP + + L + Sbjct: 357 SLITLQLIGRINNEDRFRLKYVDEILNHPYCHYISEKNK------ELYVSLHEKRNYYPT 410 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 +L + + + S + + LVD I+ + + + Sbjct: 411 SKEL-----------QIDDCLTKVFSSPANIHETHFASLVDWIIDIVELIGNNTKEADDP 459 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S+ L + + + + + Sbjct: 460 LLKESVFRMFTLLNRVSSLI-----------------------------KSNDLIVDLVT 490 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +I + I T+ E + I+G LE+R L+F +++ NEG PK+ + F+ Sbjct: 491 LKGVIDQFIQSTTIPFHGEPIEGIQIMGVLETRNLDFKHILMISCNEGNMPKSLHDSSFI 550 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIP-TIASRWLQRLLVL 722 ++ NL + I A+ F + + + + SR++ +L+V Sbjct: 551 PYSIRKAYNLTIIDHKIAIFAYYFYRLIQRPQDITISYNNATAFGQNSEMSRFMIQLMVE 610 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 Q T+ + K + S S I + + P Sbjct: 611 SKHSIKRQALLTNQYL--------EPTQNKCISKSKEIMNILNGIEKISPSAINEYLKCP 662 Query: 783 YAVYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEI 831 + Y +IL + + D G ++H + KK ++KN + Sbjct: 663 FKFYYSKILGIREPEIEQEGALDNRTYGNVYHRSAELIYKKIMDKNNVVSKESIEKIRKS 722 Query: 832 NHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIF 882 ++Q +D F + P + + I + ++ ++ + + I Sbjct: 723 RATIEQCVDEAFSELVFKTTSSKYRPKYNGLQLVNRESIINYLIKMLQQDEASAPITIKG 782 Query: 883 VNIPAKMAI------ESIGIHLTGFADRIDLLK---SGF-VDITDYKTGDNP--KKETAQ 930 + + I E + + GF DR+D ++ G + + DYKTG + + Sbjct: 783 LELRINSEISFISNNEKRSLTIKGFIDRLDEVRHESEGRMIRVIDYKTGRPSLKHPKDVE 842 Query: 931 ------------KLIDPQLSLEAAALKAGSFSQIDCRKVA-NLFYIR-LKQK-FKIDCIT 975 Q L + ++ + V+ L YI+ + + KI Sbjct: 843 DVFNRTKIHETKADYYLQTMLYSNVVRDNIELNKEQLPVSPCLVYIQNIGSETNKIHLEL 902 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ Y + NL ++ + N E PF + S Y L Sbjct: 903 KNEPIYDIKLYQIDFMANLQGVLGEIFNSEIPFTATQDTS--WCKFCTYSKLC 953 >gi|295084360|emb|CBK65883.1| RecB family exonuclease [Bacteroides xylanisolvens XB1A] Length = 959 Score = 252 bits (644), Expect = 2e-64, Method: Composition-based stats. Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + K P S+ D+ ++ L Sbjct: 19 DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 75 ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + LK + L+ Q E Sbjct: 113 MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156 Query: 223 MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + I + G+I ++ + G + ++ + Sbjct: 157 TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + L + + + Y + + ++ + Sbjct: 208 DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394 + L N K + I A E +A + ++ +++ + + A++ Sbjct: 266 PNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 325 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447 + L V + + N++I+ G PL+ T S + +++ + A++ Sbjct: 326 NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYHSDTGRFTYEAVS 385 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++KHP + LS LE + N+ +LK Sbjct: 386 AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L D++++ I + T + Sbjct: 424 DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L+ E ++ + + + +IT+++ + E + Sbjct: 461 -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + T E A+ Sbjct: 520 GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + + SR++ +LLV G D + GQ Sbjct: 580 YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + + S S + ++ Y R + L + D Sbjct: 640 RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699 Query: 805 RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848 GT+FH +L ++ L++ +D F+KE Sbjct: 700 SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 759 Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899 I +I + L ++ + + E + + ++ I L Sbjct: 760 KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +PK ++L P Q L AA + Sbjct: 819 GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 + L YI + + ++ + L ++ + Sbjct: 878 LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 933 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + E+PF K ++ + Sbjct: 934 SEEEPFT--QTEDTKKCSYCDFKAIC 957 >gi|160886080|ref|ZP_02067083.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483] gi|156108893|gb|EDO10638.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483] Length = 959 Score = 252 bits (644), Expect = 2e-64, Method: Composition-based stats. Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + K P S+ D+ ++ L Sbjct: 19 DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 75 ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + LK + L+ Q E Sbjct: 113 MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156 Query: 223 MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + I + G+I ++ + G + ++ + Sbjct: 157 TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 207 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + L + + + Y + + ++ + Sbjct: 208 DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394 + L N K + I A E +A + ++ +++ + + A++ Sbjct: 266 PNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 325 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447 + L V + + N++I+ G PL+ T S + +++ + A++ Sbjct: 326 NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRSDTGRFTYEAVS 385 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++KHP + LS LE + N+ +LK Sbjct: 386 AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L D++++ I + T + Sbjct: 424 DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L+ E ++ + + + +IT+++ + E + Sbjct: 461 -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + T E A+ Sbjct: 520 GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + + SR++ +LLV G D + GQ Sbjct: 580 YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + + S S + ++ Y R + L + D Sbjct: 640 RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 699 Query: 805 RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848 GT+FH +L ++ L++ +D F+KE Sbjct: 700 SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 759 Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899 I +I + L ++ + + E + + ++ I L Sbjct: 760 KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +PK ++L P Q L AA + Sbjct: 819 GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 + L YI + + ++ + L ++ + Sbjct: 878 LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 933 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + E+PF K ++ + Sbjct: 934 SEEEPFT--QTEDTKKCSYCDFKAIC 957 >gi|269958928|ref|YP_003328717.1| hypothetical protein ACIS_00878 [Anaplasma centrale str. Israel] gi|269848759|gb|ACZ49403.1| hypothetical protein ACIS_00878 [Anaplasma centrale str. Israel] Length = 937 Score = 252 bits (644), Expect = 2e-64, Method: Composition-based stats. Identities = 154/1036 (14%), Positives = 320/1036 (30%), Gaps = 134/1036 (12%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V T+ S F + + + + VP+ Q L E + Sbjct: 15 RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 58 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +T + + I + V + + +S +LL LA+ + W Sbjct: 59 LTAHGANL--DILAFTSVD-------GCAATAYDASMSAAGQLLLLAQFVAQWNAAHRAD 109 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 L T + L +++ D Sbjct: 110 YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMVD 151 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL +W + + L+ +++AG T L Sbjct: 152 FLCDLVPWWEQERKSCGLAPSGCGIGPLVEGFERS-----GRRVMVAGIVFGKIFTRFLR 206 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + + IVLP +D + W T+ +S H QY + +LL L + Sbjct: 207 LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKDLGVG 253 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R +V+RLG V + + + D+ LI + Sbjct: 254 RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMDYGTGKDIELIACSS 298 Query: 367 EREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL- 421 E EEA+ + L+ + K + + I+ A+ + + I G + Sbjct: 299 EAEEAVKVVEILKSCTTEAHCGAKAEFSRISGWAASAKPTQTAVDVDKDTIRFLEGKSVT 358 Query: 422 --STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 + ++ + +LL D+ I + + + + L+ +R Sbjct: 359 FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGDAVQLLCMLKHPLVRLG 418 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 ++ + L + R+ + T E+ + +++ I+P++ + Sbjct: 419 YDADEYCKLLAEFEIRVVRGHSATGF-EAIGSAIREEFQQLEEFWRKVVEAISPMINVRE 477 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 +I + V CL+ + KL + + FS + Sbjct: 478 GS-------TIGEIAAAHVQCLERL----MNKLDTSECTHALNKICTFFSLFDNYCMGVA 526 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ + L+ + K + + D +L G +E + Sbjct: 527 VFSLTSYKEVCTLLVRAFFTVERNKLFGVNLAT--------RDAAVLAGFSEAEFK--PR 576 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + L+ + L L E+Y G+ + + L T+S + + W++ L Sbjct: 577 CSHLLNNWARERLGLPLLEEYCGRMMYVLYSFFYAKKLRITKSAKSFGVAVAEPIWIRYL 636 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS---EIK 776 L LK R + Y + Y+ P P L+ + + S + Sbjct: 637 TFL--------LKDRTERYAATQAVVGSNVVTDPYRASAPNPGLDVRKKAMSVLTAKAVD 688 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 LI++PY Y + ILK+ + H I+ E + + +L+ Sbjct: 689 TLISNPYVFYVQYILKMFPTKTVNTQHLVRGFNIIAHKILREYLVSIGTEAGD--YNLLL 746 Query: 837 QIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 +I F+ P+ ++W F +++ +F + + +S+ + + S Sbjct: 747 EIAKRQFDAIAVTHPYAHVLWWPKFKEMARNFFVVDSERRSAASRTESGKSFVWHV-SEE 805 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 I + DR++ +K G V + K G P K + A + A ++ Sbjct: 806 IQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFAS-----RAIVDAVCVAESTGA 860 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 VA+ Y ++ + E+ + + E++ PF Sbjct: 861 NVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGFKELLLRYAERMTPFSPR---- 911 Query: 1016 EKSNIQSEYDHLARVA 1031 E + S Y+ L+R+ Sbjct: 912 EDFSTFSAYELLSRIR 927 >gi|237720846|ref|ZP_04551327.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449681|gb|EEO55472.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 959 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 140/1057 (13%), Positives = 300/1057 (28%), Gaps = 189/1057 (17%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + K P S+ D+ ++ L Sbjct: 19 DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 75 ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112 Query: 163 EKKWEDLHA--------LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214 + L + + + ++ + +++ +E + L Sbjct: 113 MVDADKLFSNLQDLKNLMDDYEFLDKEQE-----EAIQQFFQNFSIEK--------RTEL 159 Query: 215 MRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 K + + +A I L V L I Sbjct: 160 KEKFISLWDKLGTIYHRYRVNLAELG--IAYEGMLYRNVIEQ------LDTDQLKYDKYI 211 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + + + D ++ G Sbjct: 212 FVGFNVLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNLE-------- 263 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS- 389 + L N K + I A E +A + ++ +++ + + Sbjct: 264 ---------EFPNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITV 314 Query: 390 ------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK---- 439 A++ + L V + + N++I+ G PL+ T S + +++ Sbjct: 315 EKEKENAVVLCNEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRS 374 Query: 440 ---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + A++ ++KHP + LS LE + N+ +LK Sbjct: 375 DTDRFTYEAVSAILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ------ 422 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + L D++++ I + T + Sbjct: 423 ----------DDFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY------------ 460 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDG 615 + L+ E ++ + + + +IT+++ Sbjct: 461 ------------NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTS 508 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + E + + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + Sbjct: 509 SNIPFHGEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMT 568 Query: 676 TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKK 733 T E A+ F ++ + + SR++ +LLV G D + Sbjct: 569 TIEHKNAVYAYYFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLE 628 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 GQ T + + + + S S + ++ Y R + L Sbjct: 629 AGQSPQSTQEIRVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGL 688 Query: 794 DFIPHFKKDPDRTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHF 843 + D GT+FH +L ++ L++ +D F Sbjct: 689 KTPDEVSAEIDSALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAF 748 Query: 844 EKENL---------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI- 891 +KE I +I + L ++ + + E + + ++ I Sbjct: 749 KKELFKVSPEEKPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQ 807 Query: 892 -ESIGIHLT--GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLS 938 L G DR+D K + I DYKTG +PK ++L P Q Sbjct: 808 TGQGPFTLRLGGTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTF 866 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSL 991 L AA + + L YI + + ++ Sbjct: 867 LYAAIMSRQQSLMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFR 922 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + L ++ + + E+PF K ++ + Sbjct: 923 ERLQTLLEEIFSEEEPFT--QTEDTKKCSYCDFKAIC 957 >gi|293369071|ref|ZP_06615668.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292635839|gb|EFF54334.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 984 Score = 252 bits (642), Expect = 3e-64, Method: Composition-based stats. Identities = 140/1046 (13%), Positives = 303/1046 (28%), Gaps = 167/1046 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + K P S+ D+ ++ L Sbjct: 44 DLSRTVLVFPNKRANLFFNEYLAGESD-KPIWSPAAMSISDLFQKLSVQKGGDPIRL--- 99 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 100 ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 137 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + LK + L+ Q E Sbjct: 138 MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 181 Query: 223 MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + I + G+I ++ + G + ++ + Sbjct: 182 TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTDQLKY 232 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + L + + + Y + + ++ + Sbjct: 233 DKYIFVGFNVLNKVESDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 290 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394 + L N K + I A E +A + ++ +++ + + A++ Sbjct: 291 PNELPESFFNTFKESKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLC 350 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447 + L V + + N++I+ G PL+ T S + +++ + A++ Sbjct: 351 NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGYRSDTGRFTYEAVS 410 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++KHP + LS LE + N+ +LK Sbjct: 411 AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 448 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L D++++ I + T + Sbjct: 449 DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 485 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L+ E ++ + + + +IT+++ + E + Sbjct: 486 -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 544 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + T E A+ Sbjct: 545 GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 604 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + + SR++ +LLV G D + GQ Sbjct: 605 YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 664 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + + S S + ++ Y R + L + D Sbjct: 665 RVEKTPEVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEID 724 Query: 805 RTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQ------IIDSHFEKENL------ 848 GT+FH +L ++ L++ +D F+KE Sbjct: 725 SALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEE 784 Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899 I +I + L ++ + + E + + ++ I L Sbjct: 785 KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 843 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +PK ++L P Q L AA + Sbjct: 844 GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 902 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 + L YI + + ++ + L ++ + Sbjct: 903 LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQTLLEEIF 958 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + E+PF K ++ + Sbjct: 959 SEEEPFT--QTEDTKKCSYCDFKAIC 982 >gi|56416656|ref|YP_153730.1| hypothetical protein AM419 [Anaplasma marginale str. St. Maries] gi|56387888|gb|AAV86475.1| hypothetical protein AM419 [Anaplasma marginale str. St. Maries] Length = 946 Score = 252 bits (642), Expect = 3e-64, Method: Composition-based stats. Identities = 158/1057 (14%), Positives = 322/1057 (30%), Gaps = 176/1057 (16%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V T+ S F + + + + VP+ Q L E + Sbjct: 24 RVLTVHCSESFVETVARYAIAHRIDA----------------VVVPSSTDAQLLSHEVSK 67 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 +T + + I + V + + +S +LL LA+ + W Sbjct: 68 LTAHGANL--DILAFTSVD-------GCAATAYDASMSAAGQLLLLAQFVAQWSAAHRAD 118 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 L T + L +++ D Sbjct: 119 YPLQIASELSLLLDEL-----------------HTNCVGPDALQVFGDDELSGR-CRMID 160 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 FL +W + + L+ I++AG T L Sbjct: 161 FLCDLVPWWEQERKSRGLAPSGCGIGPLVGGFERS-----GKRIMVAGIVFGKIFTRFLR 215 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + + IVLP +D + W T+ +S H QY + +LL L + Sbjct: 216 LLMHSVSDAVIVLPYVDLGLSDREWQTL-------------HSEHYQYYVMQLLKDLGVG 262 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R +V+RLG V + + + D+ LI + Sbjct: 263 RNEVERLGQVKVNHVVERLFNFELTSH---------------LAMNYGTGEDIELIACSS 307 Query: 367 EREEAISIAIALRMSLDENKK-----------KSALITADR---NLARRVKLEL------ 406 E EEA+ + L+ E + +A + ++ + L Sbjct: 308 EAEEAVKVVEILKSCTTEAHRGAKAEFSCIGGWAASAKPTQTAVDVDKDTIRSLEGKSVT 367 Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R + I A + S+++ + + D + + ++KHPL + G Sbjct: 368 FVGSDSLAARVDALLRIGANYCDYDEIISALVLCSIEVVVSSGDAVQLLCMLKHPLVRLG 427 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + E+ +RG+ + E+ + Sbjct: 428 YDADEYCKLLAEFEIRVVRGH----------------------SAAGFEAIGSAIREEFQ 465 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 ++++ I+P+V + +I + V CL+ + KL Sbjct: 466 QLEEFWRNVVEAISPMVAVREGS-------TIGEIAAAHVQCLERL----MDKLDTSACT 514 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 +S+ FS + ++ + L+ + K + + Sbjct: 515 HALNKISTFFSLFDNYCVGVAVFSLTSYKEVCTLLVRAFFTVERNKLFGVNLAT------ 568 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 D +L G +E + + L+ ++ L L E+Y G+ + + L Sbjct: 569 --RDAAVLAGFSEAEFK--PRCSHLLNNWVRERLGLPLLEEYCGRMMYVLYSFFYAKKLR 624 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 T+S + + W++ L L LK R + Y + Y+ Sbjct: 625 ITKSAKSFGVAVAEPIWIRYLTFL--------LKDRTERYAATQAVVGSNVVTDPYRASA 676 Query: 759 PFPPLEAQPRTYSFS---EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 P P L+ + + S + LI++PY Y + ILK+ + H I Sbjct: 677 PNPGLDVRKKAMSVLTAKAVDTLISNPYVFYVQYILKMFPTKTVNTQHLVRGFNIIAHKI 736 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + E + + +L+ +I F+ P+ ++W F +++ +F + + Sbjct: 737 LREYLVSIGTEAGD--YNLLLEIAKRQFDAIAVTHPYAHVLWWPKFKEMARNFFAVDSER 794 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 + + + + S I + DR++ +K G V + K G P K + Sbjct: 795 RYAASRTESGKSFVWHV-SEEIQVIARCDRVEYMKDGSVMVACNKVGAAPSKADMRCGFA 853 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 A + A ++ VA+ Y ++ + E+ + + Sbjct: 854 S-----RAIVDAVCVAESTGANVASFAYWKIAP-----WTVEVVQVEDCAEVIHAAKQGF 903 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 E++ PF E + S Y+ L+R+ Sbjct: 904 KELLLRYAEQMTPFSPR----EDFSTFSAYELLSRIR 936 >gi|299145464|ref|ZP_07038532.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|298515955|gb|EFI39836.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] Length = 959 Score = 251 bits (641), Expect = 4e-64, Method: Composition-based stats. Identities = 137/1046 (13%), Positives = 300/1046 (28%), Gaps = 167/1046 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ + P KRA + + P S+ D+ ++ L Sbjct: 19 DLSRTALVFPNKRANLFFNEYLAGESD-QPIWSPAAMSISDLFQKLSVQKSGDPIRL--- 74 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L +++ + + + + + L D ++ Sbjct: 75 ---------VCELYKVFKEETRSQ-------------ETLDDFYFWGELLISDFDDVDKN 112 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + LK + L+ Q E Sbjct: 113 MVDADKLFS------------NLQDLKNLMDDY----EFLDKEQEEAIQQFFQNFSIEKR 156 Query: 223 MKGTKGPIIIAGSTGSI-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + I + G+I ++ + G + ++ + + Sbjct: 157 TELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQ---------LDTEQLKY 207 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 L + + + Y + + ++ + Sbjct: 208 DKYIFVGFNVLNKVENDFFRKLKDAGKALFYW--DYDIFYTQQIKKHEAGEFLKRNLEEF 265 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-------ALITA 394 + L + N K + I A E +A + ++ +++ + + A++ Sbjct: 266 PNELPESLFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQIAVEKEKENAVVLC 325 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-------LNDFMAIA 447 + L V + + N++I+ G PL+ T S + + + + A++ Sbjct: 326 NEALLLPVLHSIPQEVKNVNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVS 385 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++KHP + LS LE + N+ +LK Sbjct: 386 AILKHPYTQ------QLSSHAGPLERELTQTNRFYPLPSELKQ----------------D 423 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L D++++ I + T + Sbjct: 424 DFLTTLFTPRNGIKELCDYLIELIKNISTIYRKEGEY----------------------- 460 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L+ E ++ + + + +IT+++ + E + Sbjct: 461 -NDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITKVLTSSNIPFHGEPAI 519 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++G LE+R L+F LI+ LNEG PK+ + F+ ++ + T E A+ Sbjct: 520 GMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKNAVYAY 579 Query: 687 DFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F ++ + + SR++ +LLV G D + GQ Sbjct: 580 YFYRLIQRAENITLLYNTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEI 639 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 T + + + + S S + ++ Y R I L + D Sbjct: 640 RVEKTPEVLRRIYRAYDSTNPNSVILSPSALNAYLDCRLRFYYRYIAGLKTPDEVSAEID 699 Query: 805 RTDRGTLFHNIITELIKKRINKN----TPEINHLMKQ------IIDSHFEKENL------ 848 GT+FH ++ L++ +D F++E Sbjct: 700 SALFGTIFHLSAQLAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEE 759 Query: 849 ---PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAI--ESIGIHLT-- 899 I +I + L ++ + + E + + ++ I L Sbjct: 760 KPEYNGIQLINSKVIVSYLKQLLRNDLQ-YTPFEMVAMEKKVSEEITIQTGQGPFTLRLG 818 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP---------QLSLEAAALKAGSF 949 G DR+D K + I DYKTG +PK ++L P Q L AA + Sbjct: 819 GTIDRMD-AKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-------EKSLKNLIEIVTLLQ 1002 + L YI + + ++ + L ++ + Sbjct: 878 LMVAPA----LLYIHRAASENYSPVIEMGEPRKPKIPVNNFAFFEDEFRERLQALLEEIF 933 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + E+ F K ++ + Sbjct: 934 SEEETFT--QTEDTKKCSYCDFKAIC 957 >gi|120437694|ref|YP_863380.1| hypothetical protein GFO_3373 [Gramella forsetii KT0803] gi|117579844|emb|CAL68313.1| conserved hypothetical protein [Gramella forsetii KT0803] Length = 927 Score = 250 bits (637), Expect = 1e-63, Method: Composition-based stats. Identities = 151/1022 (14%), Positives = 291/1022 (28%), Gaps = 189/1022 (18%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ VT +P+KRA L E I+ K+ P I S+ + E + + + + Sbjct: 27 PLSEVTFILPSKRAGSYLIKELSSISD-KNLFSPTIYSIEEFTEVVSGLESIDNTS---- 81 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L ++ + + + + I A+NL + I+ Sbjct: 82 --------SLFEFYDVYEDLTEENSLEDFET-----------FITWAQNLIHDFNEIDRY 122 Query: 163 EKKWE-DLHALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASSPV 208 ++ + L + W F L + + +L+ N Sbjct: 123 LIDYKPFFNYLAGIQDINHWYLKDEKTDLIKRYLKFWKNLPGFYEALSRKLLSKNQGYQG 182 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ + + I G + ++ + L+ + Sbjct: 183 LIYRKAAENITDYAATHKQKHVFI-GFNALNASEQLIIQNL------------LETKLAE 229 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 W+ + + S Sbjct: 230 IYWDLDKTFYKDP------------------------------------------AHGAS 247 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 + D N++ LI +A + L + Sbjct: 248 IFIRDYFKNWKYYQDNEPNELSENFGKEKQFELIGVPKNIGQAKYLGEILTNLNSAQLEN 307 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI---FKLNDFMA 445 +A++ + L V L +++I+ G P+ +S+ SL + Sbjct: 308 TAIVLGEEELLLPVLNSLPEEIQDLNITMGFPVKNAPINSLFESLFQIHINKTDTYYYKD 367 Query: 446 IATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + +++ H P+ K E + L + + +S+ Sbjct: 368 VISIINHPSFNPILKNYAEELIIKINSENLIYLEPKKIISSFP----------------- 410 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 T + + + + + + Q I L T+ + Sbjct: 411 -TEIKELITACFNPKNDAVSIFISDVQQIIQNLKTHLKKEED------------------ 451 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L F L + + ET +K ++ ET+ + Sbjct: 452 ----------KIALEFLYHFHILFNKLQNLNETYPHLK-TIKSLYGFYREMVGTETLDFQ 500 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKY 680 L ++G LESR L+F+T+I+ LNEGV P + N F+ ++ + L T EK Sbjct: 501 GRPFQGLQLMGMLESRALDFETVIITSLNEGVLPAGKSDNSFIPYDLKQEYKLPTYREKD 560 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 H + + +++ + + SR++ +L + Sbjct: 561 AVYTYHFYRLLQRAKNVYLLYNTEADGLNSGEKSRFITQLEIENLKTHTLRKLLISPEVP 620 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 + L K P +S S + I +P Y + +L + Sbjct: 621 GINKNLKEVRKTPEIM----DKLKSLANSGFSPSALTTYIRNPLDFYHQYVLGVRDQEEV 676 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMKQIIDSHFEKE--------NLPP 850 ++ GT+ H+ + L K K T EI +I D E L Sbjct: 677 EETVAFNTLGTVVHDALENLYKPYEGKLITEEIIQGFIKIADREIANEFSKTYSKIPLEK 736 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIE---KIFVNIPAKMAIESI----GIHLTGFAD 903 +++ + + H+FL E K E I + K+ + ++L G D Sbjct: 737 GKNLLIFEVAKRYLHNFLRFELKRLKQGEEIQIIQIEKDLKVKLPIEKLPFSVYLRGKVD 796 Query: 904 RIDLLKSGFVDITDYKTGDNPKKE-------TAQKLID-----PQLSLEA-AALKAGSFS 950 R + KS I DYKTG + K D Q+ A Sbjct: 797 RFENSKS-TPRIIDYKTGKVESRNLNVTDWGEITKDYDNYSKSFQVLTYASLIALEKGLK 855 Query: 951 QIDCRKVANLFYIRLKQK----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + + + LK K + T K E E L ++ + N E Sbjct: 856 --FPAEAGIVSFKNLKSGFLKFEKREAGTRQKDSLITGETLEMFQNELKNLIMEICNPEI 913 Query: 1007 PF 1008 PF Sbjct: 914 PF 915 >gi|303237137|ref|ZP_07323707.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302482524|gb|EFL45549.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 961 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 148/1085 (13%), Positives = 305/1085 (28%), Gaps = 208/1085 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F E+ L+ L+ + + P KRA L E + + P Sbjct: 8 FLAEVAQDLIKKYGNN-----------LSKIAVVFPNKRASLFLNEELAKRSDG-PIWSP 55 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ ++ ++ + L L + K Sbjct: 56 SYITISELFRQQSALTIADPIK------------SLCVLYKTYIEKT------------- 90 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKK-------WEDLHALKNEKYGMWWLLAADFLK 189 + + L D I+ +DLH L Y L Sbjct: 91 GKSETLDEFYSWGQLLLADFDDIDKNMADAKMIFRNLKDLHELDTIDYLSEEQKT--ELS 148 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 ++ ++ + + + ++ + K + L V Sbjct: 149 RFFANFS------GDTTVLKERFLNLWSKLYDIYCDFKAKLKAEELA----YEGMLYRDV 198 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 N T + Q KL L + + Sbjct: 199 VEKKN----------------------YPTQYETYIFIGFNVLQTVEQKLFSALKKEGKA 236 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + D + + N + +V + A E Sbjct: 237 RFYWDFDHYYLKATNEAGVYINKWFDKFPNEFDNNS--DLYNHFEDEKEVHYVSAPTENL 294 Query: 370 EAISIAIALRMSLDEN-KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A I+ L K++A++ + +L + V + I+++ G PLS T SS Sbjct: 295 QARYISEWLLEKERYKAGKRTAVVMCNESLLQTVIHCVPTEVDLINVTTGYPLSQTPISS 354 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++ + L + + LR Y I D Sbjct: 355 MV-------------WQLIALQTEGYSASED------AFRLKFITHVLRHPYGKYLIADA 395 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ D + + VD Sbjct: 396 SEKLTTLRLNKQFYIKGQDIGFIHVNHDNQHIIEFVDW---------------------- 433 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK--TLSSLFSKIIETGSCIKANAIEWI 606 ++N+ + L+ E + TL + S+++ + A+ Sbjct: 434 --------LSEMVKNIAIGGKENDDQLFQESTFRMYTLLNKLSELM-KSGDLIADYAILR 484 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++++LI ++ E + + I+G LE+R L+FD ++L NEG PK N F+ Sbjct: 485 RLLSQLISSTSIPFHGEPAHGVQIMGVLETRNLDFDNVLLLSCNEGNMPKGVNDNSFIPH 544 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGG 724 +++ L T + + ++ F +H+ + T SR++ +L+V Sbjct: 545 IIRKAYGLTTIDNKVAIFSYYFHRILQRAKHVTLLYNNSTQGTKTAEMSRFMLQLMVESN 604 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + GQ ++ T + + K +S + I Sbjct: 605 LNIKQIALQAGQEPMNLTTSILQKDEVVMAK--------LNHISYFSPTAINTYRRCELM 656 Query: 785 VYARRILKLDFIP-HFKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLM----- 835 Y + + +L + + D D G +FH + ++ + + +I ++ Sbjct: 657 FYYKYLAQLKEPDNNEEDDIDNRIFGNIFHLAAELIYERLLPREVITKEDIEKVLKSGKS 716 Query: 836 -------------KQIIDSHFEKENLPP-----------HIDIIWRHLFHKISHSFLEHE 871 +I F +E + II + + K+ LE + Sbjct: 717 VQSPTMGNTNITIDDVIAEAFARELFLQNNGMKRLPKLNGLQIIKQQVIKKLLLQMLELD 776 Query: 872 EKIQSSIEKIFVNIP----AKMAIESI--GIHLTGFADRIDL--LKSGF--VDITDYKTG 921 K + + I + I I + G DR+D L +G + + DYKTG Sbjct: 777 -KRTAPMRVIKHEFDIHKTLSLDINGTKKEIKVGGRVDRLDEVNLGTGREQLRVVDYKTG 835 Query: 922 D--NPKKETAQKLIDP------------QLSLEAAALKAGSFSQIDCRK--VANLFYIRL 965 + + + + +P Q L + + K L +I+ Sbjct: 836 NKVAAGLKDVEAIFNPSNIAKNKSDYTFQALLYSLIEQTEDAENNPQHKQVSPALLFIQH 895 Query: 966 KQKFKIDCITNDKKKYSADEL--SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + I + D L +E+ L + + L E + Q Sbjct: 896 AKSEDYSPILKLGNEDILDSLTYAEEFETLLKKELEGLFTKE---TFEPTTIKDICKQCP 952 Query: 1024 YDHLA 1028 Y + Sbjct: 953 YQQIC 957 >gi|149278326|ref|ZP_01884464.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39] gi|149231092|gb|EDM36473.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39] Length = 970 Score = 247 bits (631), Expect = 5e-63, Method: Composition-based stats. Identities = 148/1086 (13%), Positives = 306/1086 (28%), Gaps = 193/1086 (17%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF RE+ L+ E L I KR + L++ ++ K Sbjct: 3 PFLREVAEDLVARLGAE-----------LHHAAIVFNNKRPVPYLQNHLADVI-GKPFWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK-----LPDIIKDL 130 P ++ + ++ + L + + + L + Sbjct: 51 PSFFTIQEFFALSTRLEIAD---------GFTQFFTLLQQYNLLLAEEGSKPLNPDVFYP 101 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL-------- 182 LS N + A L + + I E+ ++ L + +W Sbjct: 102 IARIILSDFAQIDNDLVNAGQLFEELKDIAIIERDFQHLSPEQQAFLEQFWSSFSAGKQL 161 Query: 183 -------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM---KGTKGPIII 232 + + L ++ L +A+ +G ++ Sbjct: 162 NHQEQFIRMWRRMPKLYAGFHAALEAKGLTTMAHVYRLLAEGKADRPEFVADFARGKLVF 221 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 AG A A + G D ++ NI + Sbjct: 222 AGFNALSNAEAEIFKRWQKEEKGLFYFDTDDYYMKDDTQEAGLFLRKNIERLGLPNALVE 281 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 Q +L+ + + + K G + + ++ + Sbjct: 282 Q---KELIRSIQKEVKVYKTQGQTAQAKILQQELLQDYPML------------------- 319 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 + R+ A IA+ L +S L+ + + + I+ Sbjct: 320 -------------DSRDNAGKIALILA-------DESLLLPVLQTIPTSYQTVEGLNSID 359 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEKYLS 465 ++++ G PL + + L+ + + + HPL ++ + Sbjct: 360 LNVTMGYPLLASSIFGLADLWLSIQSQLTEGKKDTVYYREVEAFLSHPLTGVAAEQRDVL 419 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + + LA LV+ Sbjct: 420 -------------------------------------------------QQEILAGQLVE 430 Query: 526 HILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 L + L+ + G +IS ++ L+ D+ K Sbjct: 431 VPLSRLQESLLWELFFSRVSGGLTAISSLQQVFKRILERQLEDKTLKQTEADLFAATIKE 490 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + +E + + +I + I G V E + ++G LESR L+F+ + Sbjct: 491 LNRLHDTLE-LYASRLPLPFVLSLIQKAIQGIAVPLSGEPLQGIQVMGLLESRSLDFEHV 549 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS- 702 + GLNEGV P+ F+ ++ L E +A+ F +R + + Sbjct: 550 YVLGLNEGVVPQVNVSPSFIPDSIRRAYGLPVLENQDAISAYMFYRLLQRSRKVSLVYNG 609 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 ++N SR+L++L G F + + + T + Sbjct: 610 QADDNNTGEPSRFLRQLEFESGYTFKYYDQSQALAIETVSDFSIPKTGAVLERLHAYLEG 669 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 A S + I +N P + + I K++ ++ + G+ H ++ Sbjct: 670 HAAYQPRLSATAITTYLNCPIQFFYKYIAKIEEPKELAENLEANSIGSTLHLVLERFYAG 729 Query: 823 RINKNTP-------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH----- 870 + + ++ S F ++ + + Sbjct: 730 LKADDDHITKARISGARKALGELCKSAFATVMFDQEEARAEHSGMEQVMLAIVAEYANVI 789 Query: 871 --EEKIQSSIEKIFVN------IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKT 920 ++ Q+ I + IP + ++ + L G DR+D +G V I DYKT Sbjct: 790 LDHDEQQAPFTLIELENDEDYKIPFTIKVQGEERRVTLFGIIDRVDQR-NGVVRIVDYKT 848 Query: 921 GD----NPKKETAQKLIDP-------QLSLEAAALKAGSFSQIDCRKVANLFYI--RLKQ 967 G E + P Q + I + YI ++++ Sbjct: 849 GRDEIGYSSIEELFERDSPQQNKALVQTLFYTYVYEQA--RGIRGVEPN--LYIVRKMRE 904 Query: 968 KFKIDCITNDKKKYSAD-ELSEKSLKNLIEIVT----LLQNGEQPFISHLRLSEKSNIQS 1022 + + +KK E E +N ++ L + PF SH E + Sbjct: 905 EGTLFYSRESRKKVLLQAEHLEALKENFSSLLRLKLEELFDPSVPF-SHTTAMEN-CVYC 962 Query: 1023 EYDHLA 1028 Y +L Sbjct: 963 PYSNLC 968 >gi|218885869|ref|YP_002435190.1| hypothetical protein DvMF_0765 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756823|gb|ACL07722.1| conserved hypothetical protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1100 Score = 246 bits (628), Expect = 1e-62, Method: Composition-based stats. Identities = 136/990 (13%), Positives = 258/990 (26%), Gaps = 96/990 (9%) Query: 2 HNKKPNVFTI-APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 + P F I + F + L+ T P R + L Sbjct: 36 AGRGPRPFLIFPWDTDFLAGLTATLIEATNGRP-----------GDAVFVFPHGRPGRYL 84 Query: 61 RSEFIEITGK-KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119 + +LP + ++ + + P+ + R+ L + Sbjct: 85 VDRIRRAPDIVRPCLLPRVFTVRQMFTLLRAHAEDPTARPARPIPLLDRVGLLMDCVRGL 144 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 ++ + L LA +++ + + ED + + Sbjct: 145 ARPGDELYEHLAATDQ-------RRFFPWGVRLAALMEEFFVQNRVPEDYQYM-EGQVAP 196 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------------- 226 + L + + L E ++P +R G Sbjct: 197 FAAALLGALGRIHEAYAAALTERGWTTPGFDAFRSVRLLPGPDETGRATERPDGFTLPPL 256 Query: 227 --KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + +AG + L + H + L Sbjct: 257 LAGKRLFVAGFSTLTGTEEALFLHLWRHEGATVCLHT-----------DAAVAELGGRPV 305 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + T H + L + + S L ++R Sbjct: 306 HWTCEDH-----VRWLTSWRAGAALACPPSGHTPSITFHEGYDLHSQLLVMERELRADSG 360 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 P+ S + E+ +I DE A++ D L V Sbjct: 361 DAPDAPSANATPSGNLKESSLTPAIESTENSIPPAPDADELAGT-AVVLPDTGLLMPVLH 419 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF--GFPEK 462 L +++IS G PL + ++ +L+ ++A + P A F Sbjct: 420 HLP--DKDVNISMGYPLVRSTLVRLVETLMRLQETARPAASLALPEQGPEAGPGDTFAAP 477 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 S + R LK L LD ++ H+ R + L Sbjct: 478 GGSDTAPSTMCYHWRTVIECIRHPYLKMLELDGERPLRDLFHLMENVVRGGASYVDPRAL 537 Query: 523 LVDHILQCIT-----PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + + +D + +C LW Sbjct: 538 AREVAQKAPGGEHGPAAALLHRVLELCLTRWEAADTPARVADVVGALCDLLLAHGGTLWE 597 Query: 578 EE--EGKTLSSLFSKIIETGSCIKANAIEWID-----IITRLIDGETVKPKIEKSSTLFI 630 + + L L ++I + + I+ + E V + + L + Sbjct: 598 RFPIDAECLFRLMQRVIPALRDCELADTPFPREVLHTILRETLREERVPFEATPLAGLQV 657 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 LG LE+RLL F +I+ E P +P L +++ L + + AAH+F Sbjct: 658 LGMLETRLLRFRRVIVLDATEDRLPGAPGHDPLLPDSLRAMAGLPDSRRRERVAAHNFHR 717 Query: 691 ANG-TRHLIYTRSLRENNIPTI-----ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + + + SR+++ LL L GQ L Sbjct: 718 LLAGAEQAVLCYQTGVDRSGLLDEKKIRSRFVEELLWREERAR-GGLLSPGQPPLHAAAC 776 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPR----TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + + +A R S S + + P + R+ L Sbjct: 777 TVRPFRSAPRPIERTTAINDALERLLDAPVSPSTLDAWLTCPVRFFHERLAGLAPPDEVN 836 Query: 801 KDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 + D G L H ++ + + + ++ L + Sbjct: 837 EGDDPIAVGDLLHKVLLDFHLPHKGREVRRDELSAEHLTRLFLQRLGASGLSAQLPPDAL 896 Query: 858 HLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIG------IHLTGFADRIDLL-- 908 + L Q + + P + I+ G L G DR+DL Sbjct: 897 LMLEVAGPERLGRYLSRQPERFTVLELEEPVEATIDVPGSAGRRIRRLHGRVDRVDLRDF 956 Query: 909 KSGF-VDITDYKTGDN---PKKETAQKLID 934 + G I DYKTG P + L + Sbjct: 957 EDGQGAVILDYKTGKVEWKPSAWSDDALWE 986 >gi|218516573|ref|ZP_03513413.1| hypothetical protein Retl8_24496 [Rhizobium etli 8C-3] Length = 507 Score = 245 bits (624), Expect = 4e-62, Method: Composition-based stats. Identities = 215/506 (42%), Positives = 294/506 (58%), Gaps = 9/506 (1%) Query: 94 LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153 + +L P+SN R LELARLIL WRNKLP+I++ ++ +SPL P SPA+AIWLA+NLA Sbjct: 1 PATIDLAQPLSNTARQLELARLILAWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLA 60 Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213 ++ID IETE+ W +L L Y WW L A+FL+IAS +W RL EL SSP ++ A Sbjct: 61 ELIDSIETEDLDWSELSKLDTGDYAAWWQLTAEFLQIASAFWPARLAELGKSSPARHRNA 120 Query: 214 LMRAEAEHLMKG-TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 ++RAEA L GPIIIAGSTGS+PATA L+S VAN G IVLPGLD +P W Sbjct: 121 ILRAEAARLSATKPGGPIIIAGSTGSVPATADLISAVANLREGVIVLPGLDLAMPEEHWQ 180 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 + + +N +HPQY L+ LL L + R DV L ++ R+ ++S++ Sbjct: 181 MVAPEPVPGQHANPASRSHPQYGLSSLLKRLRLTRADVSTLDRPDADLDRRAEILSRALA 240 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---- 388 P + + E + F+DV+LIEA NEREEA +IA+ALR++L+ + Sbjct: 241 PAEATSDWGIWKSELPGGALTSAFNDVSLIEAANEREEATAIAVALRLALERPGQDGESR 300 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 +ALIT DRNLARRV EL+RFGI D SAG PLS T S+L LL A + D +AI + Sbjct: 301 AALITPDRNLARRVMAELSRFGILADDSAGTPLSATPQGSLLQLLLEASLRPGDPVAIVS 360 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 L+KHPLA+FG L+ A ALEL+ALRG DI L+ L+ ++A Q + H P W Sbjct: 361 LLKHPLARFGLERNALTFATEALELLALRGGVAEVDIGALEPLLTHQLAEQALDRHAPQW 420 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVT----YKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + L E + A L + + PL ++ + ++S+W + T L+ V Sbjct: 421 RKALPTEAADAAFELAGRVSRATEPLAAALVRHRPEDRGKTASFTLSEWAQRTGRALEAV 480 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSK 590 D L +LW E G L+SL + Sbjct: 481 AADPQGNLADLWSNEAGDALASLLGE 506 >gi|91215421|ref|ZP_01252392.1| hypothetical protein P700755_09913 [Psychroflexus torquis ATCC 700755] gi|91186373|gb|EAS72745.1| hypothetical protein P700755_09913 [Psychroflexus torquis ATCC 700755] Length = 900 Score = 244 bits (623), Expect = 5e-62, Method: Composition-based stats. Identities = 146/999 (14%), Positives = 300/999 (30%), Gaps = 154/999 (15%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L +P++RA Q E ++ +S I+P I+S+ + +E+ L + Sbjct: 17 LDHCRFVLPSRRAAQAFSKELLQRNQGESFIVPPIQSIEEFIEDVSEVKL---------I 67 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 +N++ L E + + + +++ + I+ + Sbjct: 68 NNLETLFEFYNIYKDHTD--------------PKHQEPIDHVYNWGQSIIQDFNEIDRYQ 113 Query: 164 KKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +K K W + + L+ E Sbjct: 114 IDANQFFGNIKAIKDIEHWSKS------------------------DVKTELVENYIEFW 149 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + K + + + G L A+ N + Sbjct: 150 ERLPKYYHEL----------KANLKSKNKAYQGMAYL--------EAVKNIEAYSKNSSR 191 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + + + + + + + + + Sbjct: 192 NFYLLGFNALNTCEEVIFQTIIDQNRGKVFWDIDNYLYD--NHIAGMFLRHYSKTWPYYS 249 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 N ++ + + +A + L + ++ALI D L + + Sbjct: 250 RESLVPSTNSYLNKKEINIYGVPKKIGQAKLVGDLLSKMSEGELNETALILGDETLLQPI 309 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI---FKLNDFMAIATLVKHPLAKFGF 459 L ++++ G+PL T S L F + L HP+ + Sbjct: 310 LNSLPDNIKKVNVTMGLPLHQTNMVSFFEVLFKIRSQNEDRLHFKTLLELSGHPVLRK-- 367 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + L+ + R +KN+ + + S + + Sbjct: 368 ------AYQKELQSIETRIHKNNIIFQSKEDFL-------------------KSCQSFDS 402 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 ++L+ + I S+ ++ + ++ + + + L + Sbjct: 403 DLILIFKLSIFIKDC--------------SVDEFLANCLKIIEILKPNFSSDVLQLEYLF 448 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 K L + ++E S + + + I ++ ET+ + L I+G LESR+L Sbjct: 449 GFKKLFTKLKNLME-SSELIKDFKVFHLIYIDILSSETLDFEGSPYEGLQIMGMLESRVL 507 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--L 697 +F +I+ LNEGV P ++N F+ ++ L T ++ A+ F Sbjct: 508 DFKNVIITSLNEGVLPSGKSQNSFIPFDLKKAYKLPTYKEKDAIYAYHFFRLIQRSSQCH 567 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + SR+L +L + L K P Sbjct: 568 FIYNNATSGIEKAEKSRFLTQLEIFKAPQHSVKNHTAVSNTQQKKTILKEVRKTPQ---- 623 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 S S + I +P Y R +L + + H ++D GT+ H+ + Sbjct: 624 MIEKLESLFQYGISPSALAAYIRNPIDFYRRYVLDIKEVDHIEEDISFRTHGTVIHDCLD 683 Query: 818 ELIKKRINKNTP---------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 L K E +++K + + F KE L ++I + + FL Sbjct: 684 FLYSNYKGKLLDSSDIDSMLKEYPNVIKTLFEKKFPKEALQNGKNLIDFKIAKQQIKRFL 743 Query: 869 EHEEKIQSSIEKIFVN----IPAKMAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGD 922 E++I S + I + + I+ I L G DRID L + + I DYKTG Sbjct: 744 IQEKEIVKSNQVIILELENIAEKSITIDDIDFSIKLKGAVDRID-LCNNQLRIIDYKTGR 802 Query: 923 NPKK------------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ-KF 969 K E + Q+ + + + +A + I L+ K Sbjct: 803 VESKDLKIAENWTDFIEDYKYSKAFQVLFYSLLKE----EDLGENGMAGI--ISLRNLKS 856 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 + K + L L ++ + + E PF Sbjct: 857 GFMTCSQTKTNLTLKSLLPDFKIQLKSLILEILDPEIPF 895 >gi|298207225|ref|YP_003715404.1| hypothetical protein CA2559_03200 [Croceibacter atlanticus HTCC2559] gi|83849861|gb|EAP87729.1| hypothetical protein CA2559_03200 [Croceibacter atlanticus HTCC2559] Length = 911 Score = 244 bits (621), Expect = 8e-62, Method: Composition-based stats. Identities = 157/1013 (15%), Positives = 310/1013 (30%), Gaps = 175/1013 (17%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L+ +P++RA+ L+ + T K+T LP I S+ +E+ Sbjct: 17 QDLSKPIFILPSQRAVSFLKQLMAKRT-NKATFLPEIYSIESFIEKVAGLQQ-------- 67 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + N L +L + + NK + + A+ + + I+ Sbjct: 68 -IDNTTTLFKLYEVYISLINKEDQETFETFS--------------GWAQTIIGDFNEIDR 112 Query: 162 EEKKWEDL-HALKNEKYGMWWLLAAD---FLKIASKYWTER----------LVELNASSP 207 ++ + L K W LA + ++ K+W + L+ Sbjct: 113 YLIPSDEFFNYLSEIKDKDHWYLADEKTTLIENYLKFWKQLPQLYNALYSSLISSKKGYQ 172 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 +L K I I G A ++ + A V LD Sbjct: 173 GLIYREAANNIDTYLSTNNKTHIFI-GFNALNNAEQHIIQQSIK-KDCAEVFWDLDEVFY 230 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 ++ ++H S K Sbjct: 231 NDTFH---------------DASHFIRSYYKN---------------------------- 247 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387 + + + + ++++I + +A ++ L Sbjct: 248 -----------WKVFENKQFNGGHNFSNKKEISIIGTPKKIGQAKAVGQILNDIPANKLS 296 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 +A+I D L + + + +++I+ G+PL +S L + Sbjct: 297 STAVILGDETLLLPLLNAIPKHIKDVNITMGLPLQKVPLASFFELLFTLQLNNTSEL--- 353 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 KH L F P + L +V+ N I SL+ A + + Sbjct: 354 -YYKHVLELFNHPSLQYVLEVSKLNVVSYINTGNIVSIK-FDSLIAQSSAEESEIVKLLF 411 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S + E + IL+ I L + + S Sbjct: 412 SSSENNPEH------FISRILKIIQYLKQNLSVEQSVLR--------------------- 444 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + L + ++ T S I N I ++ ET+ +K Sbjct: 445 --------EYLYRFNVLFNKLEHLLSTFSHIS-NISVLHTIYKDMLSNETLDFIGKKHDG 495 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAH 686 L I+G LE+R+L+F+ +I+ +NEG+ P + N +L ++ + L T EK H Sbjct: 496 LQIMGVLETRVLDFENIIITSVNEGILPSGKSANSYLPYDLKKEYGLPTYKEKDAIYTYH 555 Query: 687 DFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGG--TDFFDNLKKRGQCYLDWTR 743 + M + + SR++ +L V N T Sbjct: 556 FYHMLQRCNQAHIIFNTEAGDLNSGEKSRFITQLQVEAQNYPKHSYNNLITLPKVPKITS 615 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 +L K +S S + + +P Y R +L + ++ Sbjct: 616 QLRTVQKTAQVM----DQIKYRAKSGFSPSALTLYMRNPIDFYTRYVLGVGDTEEVEETV 671 Query: 804 DRTDRGTLFHNIITELIKKRINKNT-PEINHLMKQIIDSHFEKE--------NLPPHIDI 854 GT+ H+ + +L I + +I +M D E +L +++ Sbjct: 672 AYNTLGTVVHDTLEQLYTPYIGELLNADIIKVMTTKADKQVALEFNNTYSKSSLDKGMNL 731 Query: 855 IWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIP--AKMAIESI--GIHLTGFADRIDL 907 + + + H+FL+ E+K I+ + + + I I ++L G DR++ Sbjct: 732 LIFEVAKRYVHNFLKLEKKRLDNGEDIQILKIEEDNNVPITINGIDFPVNLRGKVDRVEK 791 Query: 908 LKSGFVDITDYKTG-------DNPKKETAQKLIDP-----QLSLEAAALKAGSFSQIDCR 955 +G I DYKTG + D Q+ A + ++ Sbjct: 792 T-NGITRIIDYKTGNVDLAKVTVKSWDDLNTDYDKYSKSFQILQYAYMM-HLKTPFLNPI 849 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 + + + LK F + + + E + + L +++ + N PF Sbjct: 850 EAGIISFKNLKSGFLPFNYNKNTEITT--ETFKAFSEQLEQLIKDICNPNIPF 900 >gi|319952836|ref|YP_004164103.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237] gi|319421496|gb|ADV48605.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237] Length = 918 Score = 242 bits (618), Expect = 2e-61, Method: Composition-based stats. Identities = 145/1032 (14%), Positives = 299/1032 (28%), Gaps = 167/1032 (16%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F E++ L + +P+KRA L++ + K+ Sbjct: 11 QSFIEEVVQELTENGI------------DFTETIFILPSKRAGTFLKNTISKNLQ-KTIF 57 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P I S+ +E + S+ ++L L + L S Sbjct: 58 APEIYSIESFIELISELNYA---------SSTEQLFTLYKSYL--------------ATS 94 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLL-AADFLKIA 191 S + + + + I+ + + + ++ ++ + Sbjct: 95 TEKDKDSFLSFSKWGQTVLQDFNEIDRYLVDTKAIFSHLSAIQELNTYFQEEPTQMIADY 154 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K+W L A Q L + A +I Sbjct: 155 VKFWNN----LEALYTNFNQTLLEKNLASQGYAYRTANTLIDDY---------------- 194 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + LD +N + + NI S Y Sbjct: 195 ------IHKTLDKKFVFIGFNALNKAEENIIQQILEKSNAHIY----------------- 231 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + S + + I ++ LI +A Sbjct: 232 -WDIDTYFLNDTLHDASLFIRQHKKNWNYFKEHSLKGISENFDSKKNIQLIGVPKNVSQA 290 Query: 372 ISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + L D K++A++ D NL + + I+I+ G P+ T + Sbjct: 291 KYVGNLLEKIHDSQPALLKQTAIVLGDENLLNPILNAIPEKIERINITMGYPIHKTPLAV 350 Query: 429 ILTSLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + + + L+ HP + + A + R Sbjct: 351 LFNLYFELWLTKESNGWFYQHLLNLLAHPYIQIYLQTDKTNNASAIANKIKTRN------ 404 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 W +++ + A L + ++ Sbjct: 405 -----------------------WIFVKTKQLAQAAPELKELTTILFN---------DTA 432 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + + L+ D L + TL + ++ S I + Sbjct: 433 LTPKNFIRRSLAIIAVLKQKFQD-SGSHLELEYLYRFHTLFNQLELMVNEHSFIT-DIKS 490 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + LI ET+ + E I+G LESR L+F+T+I+ +NEG+ P + N F+ Sbjct: 491 LQSLYKELIGTETLDFQGEPLQGTQIMGMLESRNLDFETVIITSVNEGILPSGKSNNSFI 550 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLR-ENNIPTIASRWLQRLLVL 722 ++ L T ++ + F +++ + SR +++LL Sbjct: 551 PFDLKKIYGLPTYKEKDAVYTYHFYRLLQRAKNVYIVYNTEPHVLEGNEKSRLIKQLLTD 610 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 + L+ K + +S + + + +P Sbjct: 611 DNLSENIKEITGSAAVVSANIPLERIEKSADLIE----QLKVLSEKGFSPTSLSNYVRNP 666 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQ 837 Y + IL+++ I ++ GT+ H+ + +L + + ++ + ++ Sbjct: 667 IDFYKKSILRINDINEVEESLAANTFGTIVHDTLEDLYQPFVGAYLVKESLENLLPKIEG 726 Query: 838 IIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAI 891 + +F K I ++I + + +F++ E K Q I+ I + + + Sbjct: 727 TVQHNFAKTYADGDITRGKNLIAYTVILRYIENFIKLELKEIQQHKIKIISLEQMLNVEL 786 Query: 892 ESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQ 936 E G I L G DR+D + G I DYKTG + E K Q Sbjct: 787 EIPGISHKIRLRGKLDRVDEI-DGATRIIDYKTGKVESRNVKITAWNDLIENYDKSKAFQ 845 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L A + I+ K + + L ++ + L + L Sbjct: 846 LLCYAIMIDK--VKPIETIKAGIISFKNLNSGTLYFSEKRTEEINKSTLL--EFKNVLDT 901 Query: 997 IVTLLQNGEQPF 1008 ++ + N + PF Sbjct: 902 LIQEIFNPDIPF 913 >gi|218672989|ref|ZP_03522658.1| hypothetical protein RetlG_15865 [Rhizobium etli GR56] Length = 431 Score = 242 bits (616), Expect = 3e-61, Method: Composition-based stats. Identities = 200/428 (46%), Positives = 270/428 (63%), Gaps = 7/428 (1%) Query: 52 PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRL 109 PT+RA++ LRSEF+++ G +S ILPII+ LG+ ++ F L + +L P+SN RL Sbjct: 1 PTRRAVRVLRSEFVDLLGGRSAILPIIRPLGETDDDSGYFDEALPATIDLAQPLSNTARL 60 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 LELARLIL WRNKLP+I++ ++ +SPL P SPA+AIWLA+NLA++ID IETE+ W +L Sbjct: 61 LELARLILAWRNKLPEIVRHIHSDSPLVAPASPADAIWLARNLAELIDSIETEDLDWSEL 120 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG-TKG 228 L Y WW L A+FL+IAS +W RL EL SSP ++ A++RAEA L G Sbjct: 121 SKLDTGDYAAWWQLTAEFLQIASAFWPARLSELGKSSPARHRNAILRAEAARLSAAKPSG 180 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 P+IIAGSTGS+PATA L++ VA+ P G IVLPGLD +P W + + +N Sbjct: 181 PVIIAGSTGSVPATADLIAAVADLPEGVIVLPGLDLAMPEGHWQMVAPEPAPGQHANPAS 240 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 +HPQY L+ LL L + R DV L ++ R+ ++S++ P + + T E Sbjct: 241 RSHPQYGLSSLLKRLRLTRADVSILDRPGADLDRRAEILSRALAPAEATSDWGTWKSELP 300 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKL 404 + F+DVALIEA NEREEA +IA+ALR++L+ + +ALIT DRNLARRV Sbjct: 301 AGALTSAFNDVALIEAANEREEATAIAVALRLALERPGQDGESRAALITPDRNLARRVMA 360 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 EL+RFGI D SAG PLS T ++L LL A + D +A L+KHPLA+FG L Sbjct: 361 ELSRFGILADDSAGTPLSATPQGTLLQLLLEAALRPGDPVATVALLKHPLARFGLERDTL 420 Query: 465 SRAKNALE 472 A ALE Sbjct: 421 ISATEALE 428 >gi|213961883|ref|ZP_03390149.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] gi|213955672|gb|EEB66988.1| conserved hypothetical protein [Capnocytophaga sputigena Capno] Length = 909 Score = 242 bits (616), Expect = 3e-61, Method: Composition-based stats. Identities = 143/1016 (14%), Positives = 282/1016 (27%), Gaps = 172/1016 (16%) Query: 41 PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100 P + + KR L+ F E +TI P + D+ + + L Sbjct: 16 PNKIERLVFVTTGKRPALFLKKHFAEQVKH-ATIAPEFIGIADLFTRISGVQSISNLPL- 73 Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 L E PD ++ + + I+ Sbjct: 74 --------LFEFYDCYTKTCKDTPDSFEE---------------FLSWGQTALKDFSEID 110 Query: 161 TEEKKWEDL-HALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASS 206 + + + K W F L +L E+ Sbjct: 111 QYLVNPDKIFPYIHALKEAEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTEMGKGY 170 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++L T I G A Sbjct: 171 GGFIAKKAVEKLPKYLQTHTNTIHIFVGFNALSKAE------------------------ 206 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 Q+ + +L + + + + + Sbjct: 207 --------------------------QHVIQSILMDIGGE----IYWDGDTYFLNNPTHD 236 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 S I + + ++ L +A S+A L+ + + Sbjct: 237 AGFFLRKYTNSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPTKAL 296 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMA 445 +K+ALI AD NL V + +++I+ G PL T + + + Sbjct: 297 EKTALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYHKD 355 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 I L+ P E + N L V + Sbjct: 356 ILNLLSQPFLHTLLKE----EVVRHISQYIKTHNLTYITRKKLFESVDESEHEMLTLLFP 411 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 L + A+ L+ + I P Sbjct: 412 DAKGKALITTLIDNAITLIYRLKAQIDPESN----------------------------- 442 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 L + L + ++ E + ++ ++ + E Sbjct: 443 ----THLLTQEYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPL 497 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 L ++G LESR L+FD +I+ +NEGV P + + + ++ L L T ++ + Sbjct: 498 EGLQVMGVLESRSLDFDRVIITSVNEGVLPLGKSGDSLIPYDVKHVLELPTFKERDAVYS 557 Query: 686 HDFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWT 742 ++F + + +++ + SR++ +LL + K + Y Sbjct: 558 YNFYRILQRAKQVHLFYDTEMDSLKSKEKSRFILQLLAEKIPTHKVIHQIKAPKVYPAIL 617 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 R L + S S + I +P Y +++L + ++ Sbjct: 618 RPL-----TIEKTTAVIDALKVLAEKGISPSALTTYIRNPLTFYEQQVLHIYEEKEVEET 672 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPE-----INHLMKQIIDSHFEKENLPPHIDI--- 854 + G + H + +L +N+ E + L+ I+ FE+E Sbjct: 673 VEARTFGNIVHGTLEDLYTPFLNEILTEEHIKKMQPLVLPTIEKRFEEEYRSTDFRTGKN 732 Query: 855 -IWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESI----GIHLTGFADRID 906 + ++ K SFL E K + I +++ K+ ++ I+ G DR+D Sbjct: 733 WLIFNVIEKYVRSFLALELNEIKSGTEIIPLYLEQKIKIPFQAPHLPFPIYFKGIIDRVD 792 Query: 907 LLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCR 955 +G + I DYKTG + + + QL A + Sbjct: 793 RR-NGVLHIIDYKTGIVEETDVRIKDWNNLITDIKYGKAFQLLTYAYMITKHLNIN-KKM 850 Query: 956 KVANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 VANL + RL++ I +K + + E++ + + PF Sbjct: 851 IVANLSFKRLQKGLLPFHTYIDKEKDYDVTAKTLALYSEYTEELLREIFDINTPFY 906 >gi|332519378|ref|ZP_08395845.1| hypothetical protein LacalDRAFT_0457 [Lacinutrix algicola 5H-3-7-4] gi|332045226|gb|EGI81419.1| hypothetical protein LacalDRAFT_0457 [Lacinutrix algicola 5H-3-7-4] Length = 917 Score = 240 bits (613), Expect = 8e-61, Method: Composition-based stats. Identities = 145/1022 (14%), Positives = 315/1022 (30%), Gaps = 181/1022 (17%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L+++ +P+KRA LR E + K+ P I S+ + VE+ + + L Sbjct: 17 EDLSNIHFILPSKRAGVFLRQELSRVV-NKTIFSPYILSIEEFVEDLAQLKSVTNTEL-- 73 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 L + P ++ + + A+ L + I+ Sbjct: 74 ----------LFEFYNTYLQLTPKKEQEQFE-----------SFSKWAQILLQDFNEIDR 112 Query: 162 EEKKWEDL-HALKNEKYGMWWLL----------AADF---LKIASKYWTERLVELNASSP 207 + + L K W L F LK+ K ++ L++ Sbjct: 113 YLIPQDKIFDYLSAIKTLDHWSLDDNKTDVVKNYLKFWDKLKLYYKDYSTSLIKQKIGYQ 172 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + + + + + G A ++ + + A + +D Sbjct: 173 GLIYREAVENIQHYSNTTSNKHVFL-GFNALNTAEETIIQELLK-NDLASIYWDIDKVFI 230 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + +S ++ +P + S + Sbjct: 231 ENKIHDAGLFTRQHKNSWKYFANNP------------------FNWVSTSYSIP------ 266 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DEN 385 ++ + +A +I L + + Sbjct: 267 -----------------------------KNIEVYGVPKNIGQAKAIGNILSEIAVNNPS 297 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA---IFKLND 442 K +A++ D NL V + ++++ G PL + +S+ L + + Sbjct: 298 FKSTAVVLGDENLLVPVLNSIPIAVDKLNVTMGFPLKSIPLASLFEQLFSIHKKHTEKFY 357 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + +L+ H F ++ A + +E + L +K+N Sbjct: 358 YKDVISLLSHQFISSLFVINEVNYALDLIEKIKKNNLVY-----------LSLSDLKKDN 406 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 T V ++ + ++I K+ Sbjct: 407 TQVHD--------------------------VLDLLFSNWDNKATIAIEIVFKIINKIKD 440 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L++ L +L + +L + ++ T S + + I L+ ET+ + Sbjct: 441 FLSLNKDSNLISLEYLYRFNSLFNELYRLNGTYSHVN-DISALFSIYNELLSSETLDFQG 499 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYI 681 E L ++G LESR+L+F+ +I+ +NEGV P N F+ ++ + NL T EK Sbjct: 500 EPLQGLQVMGMLESRVLDFENVIISSVNEGVLPSGKTNNSFIPFDVKLENNLPTYKEKDA 559 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 H + + +++ + + SR++ +L + N+ Sbjct: 560 VYTYHFYRLLQRAKNIYILYNTEADILTGGEKSRFINQLELENIHQIKHNIIAPKVP--- 616 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 K++ K+ + R +S S + I +P Y + +L + + + Sbjct: 617 ---KINSKLKEIEKTQAVLNQIKTVANRGFSPSSLTNYIRNPIDFYYQSLLGVKELEDVE 673 Query: 801 KDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQIID--------SHFEKENLPPH 851 + GT+ H+ + L K + K E MK ++D + ++ Sbjct: 674 ETVAANTMGTVVHDTLETLYKPFLEKYIKVEDIERMKPLVDVTITHNFSRIYADGDMTKG 733 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESIG----IHLTGFADR 904 ++I + + +FL E K + + + +++A+ + L G DR Sbjct: 734 KNLIIFEIAKRYVENFLSLEIKDLKKGNTIKILALENRSEIALNIPELNFKVQLRGTVDR 793 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQ-------------KLIDPQLSLEAAALKAGSFSQ 951 +D +G I DYKTG Q+ A + Sbjct: 794 VDEY-NGLTRIIDYKTGKVES-NQVAVIDWEDLTTDYKKYSKSFQILAYAYMMNKEKPLN 851 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD-----ELSEKSLKNLIEIVTLLQNGEQ 1006 + + + L F + D E + L +++ + N + Sbjct: 852 F-PIEAGIISFKNLNGGFIKFAKKETIRAKVKDTLITIETLNSFFEELKKLIIEICNPDI 910 Query: 1007 PF 1008 F Sbjct: 911 NF 912 >gi|313157476|gb|EFR56895.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 960 Score = 240 bits (612), Expect = 9e-61, Method: Composition-based stats. Identities = 135/1084 (12%), Positives = 287/1084 (26%), Gaps = 194/1084 (17%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 F E+ L L+ + P++RA + Sbjct: 3 GFLEEVAGDLYARYG-----------EGLSERAVLFPSRRARLFFVDALTR-IAGRPMWQ 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPE 133 P ++ D++ E R+ + L ++ P + + Sbjct: 51 PEWVTVDDLMSEISGLHAGD------------RVRLITELYKVYSEFHTEPFDKFYFWGD 98 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKK-----WEDLHAL-------KNEKYGMWW 181 L+ + A+ L I I+ E L L + Sbjct: 99 MLLTDFDTIDKYRIDAQMLFRNISEIKEIEADISYLTPAQLQILSFWSSLGEEADLSEEK 158 Query: 182 LLAADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTG 237 L + + RLV L + Q A AE ++AG Sbjct: 159 RRFLAIWKTLGPVYRKFRRRLVSLGIAYNGMVQRAAADRIAEGAFAFPEPRRYVVAGFNA 218 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 +L +A D + + + Sbjct: 219 LSECEKQLFKFLAVAAE-TDFYWDYDAYYKDNPEQEAGMFVRSNVALFPP---------- 267 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 R+ + + + Sbjct: 268 -------------------------RTEFAHDNMRGEKEVVSVAAVSNAVQCKYAAAILA 302 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 D+ A +E +A L+ +L K++A++ D NL + L ++++ Sbjct: 303 DL----ARRRAQEDPEVAAGLKPAL---GKETAVVLTDENLLLPLLYALPADIGRVNVTM 355 Query: 418 GIPLSTTLHSSILTSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G PL +L + + L+ +A ++ HP + + Sbjct: 356 GFPLRQSLAYTFVERLVELQNHRRKKGGGWTFYHADVAGILAHPYV-----AECDAALTR 410 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + +R S D L ++ L + A + Sbjct: 411 TMHEEIVRDRWISVDAAWL-------------------GRNELLKRIFSPAAEWRELSDY 451 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + ++ + + + L E Sbjct: 452 LLGVIAAVARQPYEGDDARQRVEFLAVIAEQVTKLRNSLDECDIELATEV---------- 501 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + ++ R + + + E + I+G LE+R ++F+ +IL + Sbjct: 502 ---------------YTSLLRRHLQTLRIPFEGEPLEGIQIMGILETRNVDFENVILLSM 546 Query: 650 NEGVWP-KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLREN 706 N+ +P + A++ F+ +++ L T E + G A+ F + S ++ Sbjct: 547 NDDNFPGNHVAQSSFIPYNLRAAYELPTPEHHEGVYAYYFYRLIQRAKSVHMLYCSHADD 606 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 SR++ +L G D + K R Sbjct: 607 KSTGEPSRYIYQLDYESGFDVRKIEVGVDVNLAETAPI--EVAKDGEVMRRLERFVDAES 664 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P S + + + P Y + +L+ ++ D GT+ H + L + + + Sbjct: 665 PAALSPTAFFRYVACPLRFYFHSVARLEADDEISEEVDAPMFGTILHAAVQTLYARIVGE 724 Query: 827 NTP-----------EINHLMKQIIDS-HFEKENLPPHIDIIWRHLFHKISHSFLE----- 869 P E+ +++ I+ + + E L I +L Sbjct: 725 EHPGQTLRAMIRSGEVAAAVERAINENYLQDERASAEDYTGNLLLVKDIVTRYLRGGVMP 784 Query: 870 HEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 ++ + + + + + G ADRID+L G + + DYKTG Sbjct: 785 YDAAHDA-FAVSGLEERVAYSFPFRAGERELEMKFGGIADRIDMLGDGALRVVDYKTGAP 843 Query: 924 P------------KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + I Q L + L + L+Y+R + Sbjct: 844 HLEFDGVESLFTGTGKQRLSNI-LQTLLYSMILHHTRGCDAEPA----LYYVRSMNRPDY 898 Query: 972 DCITNDKKKYSADE----LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 +DK+ E+ + L + + + PF + ++ + Sbjct: 899 SPQLDDKQLGVRGARYTLYRERFEELLRAQLAEMYDPAVPF--RQCEDADTCKFCDFRII 956 Query: 1028 ARVA 1031 + Sbjct: 957 CKRG 960 >gi|34540333|ref|NP_904812.1| hypothetical protein PG0517 [Porphyromonas gingivalis W83] gi|34396645|gb|AAQ65711.1| hypothetical protein PG_0517 [Porphyromonas gingivalis W83] Length = 960 Score = 240 bits (612), Expect = 9e-61, Method: Composition-based stats. Identities = 129/1040 (12%), Positives = 267/1040 (25%), Gaps = 212/1040 (20%) Query: 102 PVSNIQRLLELARLI----LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 P + R L L IW P + + L + AK L + Sbjct: 18 PYKELDRTALLFELYNTYKEIWPQAEPFDQFIFWGDIILKDFNEIDKHLVSAKALYSNLK 77 Query: 158 IIETEEKKWEDLHALKNEKYGMWW---------------LLAADF---LKIASKYWTERL 199 E + L + +W DF L + +RL Sbjct: 78 DFREMENDFSFLSERQVAAIRSFWESFSPASGQMENGCQQSFLDFWKLLSPLYIRFNQRL 137 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT-------------KGPIIIAGSTGSIPATARLM 246 + + + + G PA ++ Sbjct: 138 ADQGNGYHGMILRHTVDRLRQRETSVRELLSSADRGGNAHPDKYVFVGLFALSPAEEYIL 197 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + D + + N + Sbjct: 198 VRM-KAEGICDFCFDDDLSLLHSAGNLTGTILDHNKEIF--------------------- 235 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + + + K D+ +I + Sbjct: 236 ---------------------------GKQTPWQESSENGQTSSLEDKPAPDIRIIRTAS 268 Query: 367 EREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPL 421 E +A + + E +A+I D + V L I+++ G PL Sbjct: 269 EIVQAKLLPQLIEELYPEGYSDKEGIETAIILPDTGMLMPVLNSLAETVGRINVTMGYPL 328 Query: 422 STTLHSSILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 S + S + + + A+ L+ L + N Sbjct: 329 SQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVLDLLNSVLLTPLLTDHSRDLLSNREVT 388 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + +L L+ R P +L + L + + + Sbjct: 389 KQYYVPEERLWGDELTDLLFSR----------PDSGQQLLDRLFLLLEKIAESM------ 432 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L E L + + + ++E Sbjct: 433 ----------------------LFQPADSEYDQSEETNNMELEQIYHYRNMLNRLRGLVE 470 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + + ++ L+ G ++ + E L I+G ++R L+F LI+ +NEG Sbjct: 471 -SYAMDMSVRSAALLLQGLVSGVSIPFEGEPLVGLQIMGIDQTRSLDFKHLIILSVNEGK 529 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENNIPTI 711 P + + ++ L E ++DF + + + Sbjct: 530 LPSRVYETTMIPYTLRRGYGLPVNEVNEATQSYDFFRLIQRAESVTMLYDARSDQLGGGE 589 Query: 712 ASRWLQRLLVL---------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 SR+++++ L ++K G+ R L+ ++ Sbjct: 590 ESRYIRQMHFLFDMPLKVQELHLTGSLPHSPAICVRKEGEVLTRLHRFLECDNEESL--- 646 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 E + S S I + P Y + + + D GT+ H + Sbjct: 647 -----DPEERLSALSASSINTYVACPLRFYFENVRGIREENASDELMAANDFGTVVHRSM 701 Query: 817 TELIKK----------RINKNTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRH 858 + K +++ N + +I+ + +E L ++ ++ Sbjct: 702 ELIYKPCCGGGIVSSDILSRWLDPKNATIARIVRQAYTEEYLRSANTQGALSGLNHLYCI 761 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDI 915 + K LEH++ + I K + + L G DRID L I Sbjct: 762 MIEKYVRRILEHDKSLAP-FRYIDSERRVKGSFSLSNGSRVRLHGIIDRIDELNEECRRI 820 Query: 916 TDYKTGDNPK--------------KETAQKLID-PQLSLEAAALK-----AGSFSQIDCR 955 DYK+GD ++ + Q L A K G S++ Sbjct: 821 VDYKSGDTTTELGSWDLMFQHPIAGKSKKHPTAIAQTLLYALMAKMQMENEGEGSELPLC 880 Query: 956 KV--ANLFYIRLKQKFKIDCITND-----KKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 + K+ + + + ++ D++ E + L + L + + PF Sbjct: 881 PTIYGFKELYKQKEDYTGVVVLKEVGKAIEQITDFDQICEMFEERLRTCLDELFDPDIPF 940 Query: 1009 ISHLRLSEKSNIQSEYDHLA 1028 + ++ + L Sbjct: 941 TETEDI--RTCSYCPFASLC 958 >gi|298376810|ref|ZP_06986765.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298266688|gb|EFI08346.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 959 Score = 240 bits (612), Expect = 1e-60, Method: Composition-based stats. Identities = 137/1056 (12%), Positives = 288/1056 (27%), Gaps = 191/1056 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 ++ + I+ G + Sbjct: 191 MIFREVVESMERGESPDLPYEQIVFVGLNALSVSEE------------------------ 226 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 L I + + + ++ Sbjct: 227 ---------------------------RFLAQLQKRKIADFYWDYVSDKVTDPDNKASYF 259 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMS 381 S M K+P +K +++ +I + +A + L Sbjct: 260 VSRNRKSFPSSM--------KLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEM 311 Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 312 SSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVR 371 Query: 440 ------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L F + ++ H PE ++L NK +L Sbjct: 372 YIDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT-- 424 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + D++++ + L S Sbjct: 425 --------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SAL 458 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + D ++ +F + + IE + ++ R+ Sbjct: 459 SDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVT 512 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D T+ + S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ Sbjct: 513 DTITIPFHGDPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFG 572 Query: 674 LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNL 731 L T E A+ F H+ R N + T SR++ +L + Sbjct: 573 LPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEV 626 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYAR 788 R + + + + + S S I ++ P Y Sbjct: 627 PMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFS 686 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLM 835 + + + + G++ H ++ EL K + Sbjct: 687 VVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIA 746 Query: 836 KQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-- 891 + F+ E + + + K LE + K+ I I Sbjct: 747 RAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISL 805 Query: 892 -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSL 939 + I L GF DR+D ++ + I DYK+G + + L + Q+ + Sbjct: 806 SDYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFM 864 Query: 940 EAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992 + ++ + ++Y+R L + +K ++ + Sbjct: 865 YCWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 924 GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|260061424|ref|YP_003194504.1| hypothetical protein RB2501_07485 [Robiginitalea biformata HTCC2501] gi|88785556|gb|EAR16725.1| hypothetical protein RB2501_07485 [Robiginitalea biformata HTCC2501] Length = 911 Score = 240 bits (612), Expect = 1e-60, Method: Composition-based stats. Identities = 145/1038 (13%), Positives = 284/1038 (27%), Gaps = 167/1038 (16%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F ++ L P +S +P+KRA L++ + + + Sbjct: 2 QSFLDSVLDDL------------PEWQSDPSSFVFVLPSKRAGFFLKNRMAQR-ATSTFL 48 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P I S+ D V E + +L L RL ++ + Sbjct: 49 SPHIWSIEDFVAEISGLRYAGTLHL------------LFRLYEACLDQEGIQQE------ 90 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 S A+ L + + + L L + Sbjct: 91 ------SFADFTKWGPTLLQDFNEADRYLVDTDRLFE------------TLAALNEIRNW 132 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + QIA + A + ++ Sbjct: 133 TPDGSSTPMM----DRQIAFWKNLAPIYSRFRTN-----------------LAGEGLAYQ 171 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G A ++ T +++ L K Sbjct: 172 GMAYRAAASQLASYAAARGDVRYIFIGFNALNTAED-------RIIQQLLEKPGSRIYWD 224 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + + D + I N ++ ++ +A Sbjct: 225 ADPHYIDNPVHDAGHFMR-KHLRDWPSLRTGLAGIQNHFASPRNIRMVGIPKSVAQAKYC 283 Query: 375 AIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 L E+ + AL+ D L V L ++I+ P+ + + + Sbjct: 284 GSLLGELYAEDPEGIENTALVLGDEALLTPVLHALPAEIPAVNITMSYPIRHSPMAQLFD 343 Query: 432 SLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 LL + + L+ HP + F + + +R N D Sbjct: 344 LLLEMRIRKTAEGWRVPQLLVLIAHPYLQSWFRSLDFEPTRGR--MYLIRENLYYADSDA 401 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L+++ L + S ++ +++ L + PL Sbjct: 402 LEAMGLPVTVRELLLPPPGAPPSDHAKNLEDITRALKPVYQKAGDPLQ------------ 449 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 L + L + ++ + + Sbjct: 450 ---------------------------LEYLFHFNQLFNQLIQLTGAYPFVS-DLKSLQL 481 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + +L+ E V + + S L ++G LESR L+FDT+I+ +NEG+ P + F+ Sbjct: 482 LYRQLLADEKVDFEGQPLSGLQVMGMLESRNLDFDTVIITSVNEGILPSGKSNASFIPFD 541 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN-NIPTIASRWLQRLLV-LGG 724 ++ + + T ++ + F R ++ + SR++ +L Sbjct: 542 VKREFGMPTYKEKDAVYTYHFYRLLQRARRVVICYNTEPEVIEGGEPSRFINQLRTDPVL 601 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + + +L +R E +S + + + I DP Sbjct: 602 GPQTELAFAVPETGAERPGELRIHKGPELLER-----LQEMASSGFSPTSLSRFIADPLL 656 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQII 839 Y R +L LD ++ GT+ H+ + EL + N E+ + I Sbjct: 657 FYQRNVLGLDETEELEETVAANTFGTVLHDALEELYRPLEGAFLNRDNLAELRNRSDSAI 716 Query: 840 DSHFEKENLPPHIDI----IWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIES 893 + F K L I + + FL E I + V + + Sbjct: 717 ERAFRKNYLRDGKARGKNLIALQVLRQHLDHFLGSEVTRAEKHRIRILGVEKKFRQELAV 776 Query: 894 IG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLS 938 G + L G DRI+ + G V I DYKTG E + Q+ Sbjct: 777 PGLQHPVTLKGTVDRIEEV-DGQVRIVDYKTGKVTPAELRVSEWESLRTEPDRAKAFQVL 835 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELSEKSLKNLI 995 A S K + + L F + ++ + + L Sbjct: 836 CYALLYA--GDSGTLPEKAGVVSFKNLGAGYQWFGVRTAPRQTEEQIHADTLTAFREVLH 893 Query: 996 EIVTLLQNGEQPFISHLR 1013 E++ + N PF + Sbjct: 894 ELLLEVFNPAVPFEARPA 911 >gi|228471357|ref|ZP_04056158.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] gi|228306858|gb|EEK15971.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] Length = 999 Score = 240 bits (611), Expect = 1e-60, Method: Composition-based stats. Identities = 152/1040 (14%), Positives = 325/1040 (31%), Gaps = 120/1040 (11%) Query: 43 LLASVTIYVPTKRAIQEL-RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L + VPTKRA L R ++ K +TILP I ++ + + E +L + L Sbjct: 23 PLRDQLVVVPTKRAATFLQRELVAQLQDKPATILPRIVTIDEWITEMSGRVILDNTAL-- 80 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + L + + + LS +LA + +E Sbjct: 81 -------ISILYEVYATYLANQKLGQVETDQMLSLSQTERMLRDFQD-MDLA--LADVEM 130 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP--VGYQIALMRAEA 219 E+L L + Y + ++W L + + SP A + + Sbjct: 131 LLINLENLDDLDSYAYLDEEER-----EAIKEFWRG-LSDQDLDSPQGGYRHFATVWRDI 184 Query: 220 EHLMKGTKGPIIIAGSTGS-------IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 L + +A G+ + L+ + + A+ L ++N Sbjct: 185 YQLFNVRLADLKVAYRAGAYRIVAEDTFTSDDLLRALRRYSGSAVSLVNF-----VGLYN 239 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 + I + + Q L +D + + + L N ++ ++ L Sbjct: 240 LTPAERAIIKKLQSADADALQVQLYWQRVSIDAEGDFNEHLYNTIDKNA---KLLGGVVL 296 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392 D + ++ + + + V + A+ +E + LR A++ Sbjct: 297 DEDFTRKYAPEVHLLSLNSTIQQPQVVNDLIAE-ITQEDDTALEELR---------IAIV 346 Query: 393 TADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 D + L +++++ G PL T ++ + L Sbjct: 347 LNDEKTLIPLMNSLKQPACTSLNVTMGYPLQYTSVATWIRRY---------------LNI 391 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 + L + + + L DL + ++DRIA ++ Sbjct: 392 YGLVSSSETRVERVKLTCSRLKLWLTAPLTRKLFGDLTTALMDRIALHHYAITASELRTI 451 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + E + + +L +TP +T L + D+ Sbjct: 452 IEEVAGDADEAVRQRLLDLLTPSLTGVGLLTRIGQLLELLKGLTTATDEETEEATDDDES 511 Query: 572 LPNLWFEEEGKTLSSLFSKII------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + ++ E + +++ E + ++ +L+ ++ + Sbjct: 512 IDHVILSEALDQIVRYVTQVSNLLQSSEGIHHLLNAPKPVAYLLEQLMAVGSIPFEGAPL 571 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 L ++G LE+R L FD +I+ + EG PK++ + +++S ++ T A Sbjct: 572 EGLQVMGFLETRTLTFDYVIMLNVQEGDLPKSSHTTTLIPDMLRSAFDMTTYRTEDDTNA 631 Query: 686 HDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + F G + + + R + SR++ ++ L ++ LD Sbjct: 632 YHFYRLIQGAKRVYLLQDTRPKSISSMEPSRYVDQIRYLTNLSLDESTYADS---LDARN 688 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + T + + + + + +T+S S++ N Y Y ++I + Sbjct: 689 EQEQTVAKTDEEVHRYMEQIASGDKTFSPSDLITYYNCAYQFYLKKIKGIGEPRQEPGVV 748 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE-----NLPPHIDIIWRH 858 + + G++ H + K T E++ L + ++ + D I Sbjct: 749 TQIELGSMVHAYLEWFYKGLKK--TSEVSDLEHTVSRDKLQELYKKIVSDKSAPDEILLT 806 Query: 859 LFHKISHSFLE---HEEKIQSSIEKIFVNIP-----AKMAIESI---GIHLTGFADRIDL 907 + +E + S++ + + ++ IHLTG DR+D+ Sbjct: 807 DLERYISKAIEIDKRLLQAGHSLQLLASETKMTNLCFEWTDDNGQNHTIHLTGQPDRVDI 866 Query: 908 LKSGFVDITDYKTGDNPKKETAQK-------------------LIDPQLSLEAAALKAGS 948 + I DYKTG K +T ++ Q L A + Sbjct: 867 IDGKDYRIVDYKTGAIKKPKTVEELDTDTLDAWRKMASNCKLGGYILQSCLYAMLYAQLA 926 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 I + Y I D+ S E +L L ++VT N Sbjct: 927 EEGISKIQPT--LY------SLAPAIPADEGAISFKETV--ALDELKKLVTHYLNELVAL 976 Query: 1009 ISHLRLSEKSNIQSEYDHLA 1028 +Y + Sbjct: 977 KFDQTKVLDVCKYCDYKTIC 996 >gi|150007829|ref|YP_001302572.1| hypothetical protein BDI_1187 [Parabacteroides distasonis ATCC 8503] gi|149936253|gb|ABR42950.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 959 Score = 240 bits (611), Expect = 1e-60, Method: Composition-based stats. Identities = 138/1056 (13%), Positives = 288/1056 (27%), Gaps = 191/1056 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 ++ + I+ G + Sbjct: 191 MIFREVVESMERGESPDLPYEQIVFVGLNALSVSEE------------------------ 226 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 L I + + + ++ Sbjct: 227 ---------------------------RFLAQLQKRKIADFYWDYVSDKVTDPDNKASYF 259 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMS 381 S M K+P +K +++ +I + +A + L Sbjct: 260 VSRNRKSFPSSM--------KLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEM 311 Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK-- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 312 SSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVR 371 Query: 440 ------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L F + ++ H PE ++L NK +L Sbjct: 372 YIDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT-- 424 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + D++++ + L S Sbjct: 425 --------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SAL 458 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + D ++ +F + + IE + ++ R+ Sbjct: 459 SDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVT 512 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D T+ E S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ Sbjct: 513 DTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFG 572 Query: 674 LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNL 731 L T E A+ F H+ R N + T SR++ +L + Sbjct: 573 LPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEV 626 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYAR 788 R + + + + + S S I ++ P Y Sbjct: 627 PMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFS 686 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLM 835 + + + + G++ H ++ EL K + Sbjct: 687 VVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIA 746 Query: 836 KQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-- 891 + F+ E + + + K LE + K+ I I Sbjct: 747 RAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISL 805 Query: 892 -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSL 939 + I L GF DR+D ++ + I DYK+G + + L + Q+ + Sbjct: 806 SDYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFM 864 Query: 940 EAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992 + ++ + ++Y+R L + +K ++ + Sbjct: 865 YCWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 924 GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|256820664|ref|YP_003141943.1| hypothetical protein Coch_1837 [Capnocytophaga ochracea DSM 7271] gi|256582247|gb|ACU93382.1| conserved hypothetical protein [Capnocytophaga ochracea DSM 7271] Length = 909 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 141/1022 (13%), Positives = 291/1022 (28%), Gaps = 186/1022 (18%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + KR L+ F E +TI P + D+ Sbjct: 17 DKIERLVFVTTGKRPALFLKKHFAEQIKH-ATIAPEFIGIADLFTRISDVQ--------- 66 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 P+SN+ L E + PD ++ + + I+ Sbjct: 67 PISNLPLLFEFYDCYVKTCKDTPDSFEE---------------FLSWGQTALKDFSEIDQ 111 Query: 162 EEKKWEDL----HAL-------KNEKYGMWWLLAADF---LKIASKYWTERLVELNASSP 207 + + HAL ++ F L +L ++ Sbjct: 112 YLVNPDKIFPYIHALKEVEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTKMGKGYG 171 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + ++L + I G A Sbjct: 172 GFIAKKAVEELPKYLQTHSNSIHIFVGFNALSKAE------------------------- 206 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 Q+ + +L L + + + + Sbjct: 207 -------------------------QHVIQSILMDLGGE----IYWDGDTYFLNNPTHDA 237 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387 S I + + ++ L +A S+A L+ + + + Sbjct: 238 GFFLRKYINSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPAKALE 297 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMAI 446 K+ALI AD NL V + +++I+ G PL T + + + I Sbjct: 298 KTALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYHKDI 356 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ P E + N L V + + Sbjct: 357 LNLLSQPFLHTLLKE----EVVRHISQYIKTHNLTYITRKKLFESVDETEHEMLSLLFPD 412 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 L + A+ L+ + I P Sbjct: 413 AKGKALIITLIDNAITLIYRLKAQIDPESN------------------------------ 442 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + L + ++ E + ++ ++ + E Sbjct: 443 ---THLLTQEYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPLE 498 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L ++G LESR L+F+ +I+ +NEGV P + N + ++ +L L T ++ ++ Sbjct: 499 GLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDNSLIPYDVKYELELPTYKERDAVYSY 558 Query: 687 DFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 +F + + N++ + SR++ +LL + Sbjct: 559 NFYRILQRAKQVHLFYDTEMNSLKSKEKSRFILQLLAEKIPTH------------KVVHQ 606 Query: 745 LDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 + P RP + S S + I +P Y +++L++ Sbjct: 607 IKAPEVYPAVLRPINIKKTTSVIDALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEE 666 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKEN 847 ++ + G + H I+ +L +N+ E + +++ + + + Sbjct: 667 KEVEETVEARTFGNIVHGILEDLYTPFLNEILTEEHIKKMQLLVLPTIEKRFEEEYRSTD 726 Query: 848 LPPHIDIIWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIG----IHLTG 900 + + ++ K SFL E K I +++ K+ ++ ++ G Sbjct: 727 FRTGKNWLIFNVIEKYVRSFLTLELNEIKSGIEIIPLYLEQKIKIPFQASHLPFLVNFKG 786 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSF 949 DR+D +G + I DYKTG + + + QL A + F Sbjct: 787 IIDRVDRR-NGVLHIIDYKTGIVEETDVRIKDWNNLITDIKYGKAFQLLTYAYMITQ-HF 844 Query: 950 SQIDCRKVANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + VANL + RL++ F I K + + +++ + + E+P Sbjct: 845 KIDEPMIVANLSFKRLQKGFLRFHTYIDKVKDCDVTAQTLALYSQYTEQLLQEIFDIERP 904 Query: 1008 FI 1009 F Sbjct: 905 FY 906 >gi|167753575|ref|ZP_02425702.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216] gi|167658200|gb|EDS02330.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216] Length = 948 Score = 238 bits (606), Expect = 5e-60, Method: Composition-based stats. Identities = 128/1068 (11%), Positives = 282/1068 (26%), Gaps = 179/1068 (16%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 F +E+ L + ++S+++ P++RA ++ Sbjct: 3 GFLQEVAADLYDRYG-----------DDISSLSVLFPSRRARLFFIDALS-GIAERPLWQ 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII--KDLYPE 133 P ++ +++ E + R+ + L ++ P+ + E Sbjct: 51 PRWTTIDELMSEISGLRIGD------------RVRLVTELYKVYSEFHPESFDKFYFWGE 98 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 L+ + + A L + I+ E L + LKI Sbjct: 99 MLLTDFDTIDKYLIDADMLFRNLADIKELEADVSYLSPV--------------QLKII-- 142 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 + + + S + + G + ++ Sbjct: 143 AFWANFTDETSLSEEKRRFLAV-----WQTLGPVYRTF-----------RERLRSLGMAY 186 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 G + +L FL E Sbjct: 187 TGMVHRA------AAERIKAGGFAFPESRRFVVAGFNALSECEKRLFKFLSTAAETDFYW 240 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + + + + I + + Sbjct: 241 DYDTYYTDNADQEAGMFLREN----RILFPARRELSHDHFRSPKRIEAISTVSNAVQCKY 296 Query: 374 IAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 +A LR E K++A++ D NL + L ++++ G PL +L S + Sbjct: 297 VASILRELAAEQGPLGKETAVVLTDENLLLPLLHALPAEIGKVNVTMGYPLKQSLSYSFV 356 Query: 431 TSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 L+ + L+ HP + E+V R + Sbjct: 357 ERLIELQNHARQKEGKPLFYHADVLGLLSHPYI---LESDPSRIVRMQEEIVRNRRITVA 413 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + L+ E D++L I + Sbjct: 414 AEWLACTPLLATLFR------------------SVEGWRGFSDYLLAVIAQIARMPYEDT 455 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + V L + + + +L E + + Sbjct: 456 E----------ARRRVEFLNVISEEVIKLRNSLNNCEI------------------ELSI 487 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + ++ R + + + E + ++G LE+R L+F +IL +N+ +P + Sbjct: 488 SIYTSLLRRHLQTLRIPYEGEPLEGIQVMGILETRNLDFRNVILLSMNDDNFPGSVVTGT 547 Query: 663 -FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRL 719 F+ +++ L T E + G A+ F + + ++ SR++ +L Sbjct: 548 SFIPYNLRAAYALPTPEHHEGVYAYYFYRLLQRAENVRMLYCAHADDKTTGEQSRYIYQL 607 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + ++ G KQ P S + + + Sbjct: 608 EYETPFEILR--REVGIDVNRMETLPIEVPKQGETAEKLARFLAPDDPVRLSPTAFFRYV 665 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 P Y + +L+ ++ D GT+ H + L + K ++ + Sbjct: 666 ACPLRFYFHSVARLEPDDEISEEVDAPMFGTILHAALQRLYAPFVGKTG--YGEALRALT 723 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSF------------------LEHEEKIQSSIEKI 881 S ++ + I+ + + + + Sbjct: 724 RSSEVEKAVVAAINENYLQDVEATVEDYSGNLLLVKDIVIRYIRGGVLPYDAAHDDFTVE 783 Query: 882 FVNIPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQK 931 + S+ + G ADRID L G + + DYKTG+ E + Sbjct: 784 GLEERIGQEFAFESAGKSLRVVFGGLADRIDRLPDGTLRVVDYKTGEPHLDFQGVEALFR 843 Query: 932 LID-------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK----K 980 Q L + L + L+Y+R + D++ Sbjct: 844 GEAKQRQSNILQTLLYSMMLFHSRGVDAEPT----LYYVRAMHRDDYSSRLVDRELGRTG 899 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E E + L E + + + PF +E + ++ + Sbjct: 900 VRYSEYREPFERLLRETLAEMFDPAIPFR-QCEDAEHTCRYCDFREIC 946 >gi|212702576|ref|ZP_03310704.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098] gi|212674017|gb|EEB34500.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098] Length = 993 Score = 237 bits (604), Expect = 9e-60, Method: Composition-based stats. Identities = 136/1084 (12%), Positives = 302/1084 (27%), Gaps = 160/1084 (14%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 ++F+ PF + A L R I VP R + L + Sbjct: 6 HIFS--WQHPFLPALKQA---TDLWSGGRPG--------DAVIIVPHNRPWRYLVDIYAA 52 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 + +LP + SL D+V + R L + + R+ + D+ Sbjct: 53 --AGATGLLPKVLSLPDMVRLWRMHASPVPL----------RTACLLDRVALLRDCVLDL 100 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + + ++P + LA++++ + + +DL + + Sbjct: 101 ADEDHELEKRFGDLAPGAFLPWGIRLANLLEELLGQNMVTDDLPFID--EVSPPAAALLG 158 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEA---EHLMKGTKGPIIIAGSTGSIPATA 243 L + L + ++P R + L P+++AG + Sbjct: 159 ALGRIRDAYVAALAQKGWTTPGHDFWLAARHAEDIPDLLRPADGHPVLLAGFSLLTETED 218 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L+ ++ GA V D + ++ + H Q +L Sbjct: 219 ILLRSLWQA--GARVCLHTDPAL-------ARHDEDGRSAVHWACQEHVQ--------WL 261 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + + + + + K ++ Sbjct: 262 QRWQATARPWEEDTPSPAD--------------DGQKWHYFAGYDLHSQLKALQ--RDLD 305 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 A +E + L+T L + + ++IS G PL Sbjct: 306 APSEA------------------STAILLTHGDLLLPVLHHLPDKE---VNISMGYPLDR 344 Query: 424 TLHSSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + +L SL + + ++HP L + E + Sbjct: 345 SPLFHLLDSLFRLHEGRDKDGLFYWRHLLACLRHPYLGM------LQASAPEGETGTGQP 398 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + ++ + R+ + ++E L + Sbjct: 399 LRPLLRRLERRIRSGRRLVALDDLLDTLAEGEGCADETTGPDGPLPPPSPERALLEELLH 458 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN--LWFEEEGKTLSSLFSKIIE-TG 595 +++ + + L E + + ++ Sbjct: 459 LLLEDFGDVATLAGLAGALLRLSDFLTRHGQAVWERFPLDAEALYRLVRHCVPELQHNAL 518 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S + + +L+ + + + + + +LG LESRLL FD + + + V P Sbjct: 519 SGEEMLPRLLHGLARQLLQQQRIPFEADPLGGVQVLGMLESRLLQFDRIFIVDATDDVLP 578 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT---- 710 ++P L ++ L L A + A+H R + + + Sbjct: 579 GAPGQDPLLPDSLRRILGLPDARRRERAASHTLYRLCACAREVRFYWQESQGRSGLMDSK 638 Query: 711 -IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----RPKPFPPLEA 765 SR++++L+ + K G L + + Sbjct: 639 KARSRFVEQLIW-AHEQRTGAILKPGTPPLAVATCAVAPMPPRELSLKRNQALQDAMRDF 697 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 S + + + P + + + + + + D + G++ H+++ +L + Sbjct: 698 LAAPISPTALDTYLRCPLSFVWKHLCRFRPVQEVNEKDDPAEVGSVLHDVLQQLYRPYRG 757 Query: 826 KNTPE---INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 K +M+ + EK +L + +F + LE Q + + Sbjct: 758 KPVGAGTFDMAVMRAELQHQIEKHDLRTQLPPDSLMMFSMAAPRRLEEYLCNQPAATILE 817 Query: 883 VNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-------------- 926 + P I G DR+D + G + I DYKTG Sbjct: 818 LEYPLTQVIRCNGREYTFKGRLDRLDRREDG-LCIVDYKTGIINSPAGALWDDEALFLQM 876 Query: 927 ETAQKLIDP----------------------QLSLEAAALKAGSFSQIDCRKVANLFYIR 964 + P QL L A F+++ + + Sbjct: 877 AQVRDARLPLEDRRRLAAVVFDQLAEKLRMIQLPAYLCMLHAAGFTELH-----DAALVE 931 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 L+ K + + + DE + L ++ +++G F + +Y Sbjct: 932 LRDKGREYWLFGPRLDLDNDERIRQCFDVLSLLLWHMEHGPD-FTGRP---GEGCRWCDY 987 Query: 1025 DHLA 1028 L Sbjct: 988 QALC 991 >gi|218256866|ref|ZP_03474368.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii DSM 18315] gi|218225911|gb|EEC98561.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii DSM 18315] Length = 988 Score = 237 bits (603), Expect = 1e-59, Method: Composition-based stats. Identities = 157/1083 (14%), Positives = 318/1083 (29%), Gaps = 169/1083 (15%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF ++ + E + + P +R + E++ +K Sbjct: 3 PFLYQVASLFYSKYGAEV-----------SRLAFVFPNRRTGLFFQKYLSEVS-EKPLFS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPES 134 P I ++ D+ + ++ L +L + L + + E Sbjct: 51 PTILTINDLFVQLSGKQTADRISM---------LFKLYDIYLNHSGSSETFDEFLYWGEM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL------------ 182 L+ + A+ L + + E + L + +W Sbjct: 102 LLNDFDDIDKYMVDARMLFTNVTDLREIENDFSFLSPEQIAAIRTFWSSFYPKGDTPNQE 161 Query: 183 ---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGS 238 L E L ++ ++ ++ G Sbjct: 162 QFLAVWQILYALYTDLRETLAAEGKGYEGMIFREVVEQMEKNECCDLPYTKVVFVGLNAL 221 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A R +S + I W+ + K T+ + + + +L + Sbjct: 222 SVAEERFLSELQK------------REIADFYWDYASPKVTDPDNKASYFVE---RNLRR 266 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L ++ ++K SN +S P T Sbjct: 267 FPSQLQVESGELKVESEDSNAKP-----LSTFISPLST--------------------PK 301 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGIN 412 V +I + +A + L E++ + A+I D +L V + Sbjct: 302 VEVIGIPSGIGQAKQVHSILSELCREDEMSAEEALRTAVILPDEHLLIPVLNAIPEQIKR 361 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYL 464 I+++ G PL+ T +S++ +L + F + ++ H PE Sbjct: 362 INVTMGYPLAGTPVASLMEYILALQKNIRYVDRRPVFYFRDVLPILNHRYISTTSPE--- 418 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + L NK DL L + Sbjct: 419 --VVSDLVKDISENNKIYISYDDLDKTSL----------------LSILFTPVTAVETFS 460 Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 D+++ + L ++ K S ++ + L + E + + T Sbjct: 461 DYLINVLQELNKAVESGKLKVESEDSNAEPLSTFNSQLSTINDIEQEFIFHY-----FAT 515 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 ++ + + E +K + + ++ R+ D T+ E S L I+G LE+R L+FD Sbjct: 516 VNRMKEVMREANVEMKID--TYFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDR 573 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRS 702 LI+ +NEG++P A N F+ ++ L T E A+ F H+ Sbjct: 574 LIILSMNEGIFPLRKAANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIYRASHVSLLYD 633 Query: 703 LRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 R N + T SR++ +L + L T++ + Sbjct: 634 TRSNGLQTGEVSRFVHQLHYHYEEPIQNKLVVYNVSSSKTPALQVAKTEEV---MNRLVA 690 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI- 820 R S S + ++ P Y + + + + G++ H ++ EL Sbjct: 691 FRSGGTRAISASAVNTYLDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQ 750 Query: 821 ------------KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHS 866 K + + + F+ + + P + + K Sbjct: 751 PFCGKMVTADLLKAIRKDTPMLTGAIARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEK 810 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDN 923 LE + K+ I K I L GF DRID ++ V I DYK+G Sbjct: 811 VLERDAKLTP-FRYIESEKQIKCLFPLTDKSNIQLKGFIDRIDEVRD-TVRIIDYKSGSG 868 Query: 924 PKK-ETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + + + L D Q+ + A Q+ ++Y+R D Sbjct: 869 TTQFTSVEALFDKEDTDRSKAVMQVFMYAWMY---GTVQLSTAIQPGIYYMRTLFSPSFD 925 Query: 973 CIT-------NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 ++ +L + + + E PF+ + K+ + + Sbjct: 926 PGIYRRTDRFKTEQVLDFANYHADFENSLRNCLDEIFDTETPFV--QTPNGKACVYCPFK 983 Query: 1026 HLA 1028 + Sbjct: 984 DIC 986 >gi|301310143|ref|ZP_07216082.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300831717|gb|EFK62348.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 959 Score = 235 bits (599), Expect = 3e-59, Method: Composition-based stats. Identities = 141/1056 (13%), Positives = 293/1056 (27%), Gaps = 191/1056 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADT-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFILYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ + D Sbjct: 191 MIFREVVESMERGES--------------------------------------PDLPYEQ 212 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ + S + + L L + VS+++ S Sbjct: 213 IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382 S K+P +K +++ +I + +A + L Sbjct: 258 YFVSRNLKS-----FPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 313 SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372 Query: 440 -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 L F + ++ H PE ++L NK +L+ Sbjct: 373 IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELEKT--- 424 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + D++++ + L S + Sbjct: 425 -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 D ++ +F + + IE + ++ R+ D Sbjct: 460 DEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVTD 513 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T+ E S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ L Sbjct: 514 TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 T E A+ F H+ R N + T SR++ +L + Sbjct: 574 PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789 R + + + + + S S I ++ P Y Sbjct: 628 MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836 + + + + G++ H ++ EL K + + Sbjct: 688 VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747 Query: 837 QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891 F+ E + + + K LE + K+ I I Sbjct: 748 AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940 + I L GF DR+D + + I DYK+G + + L + Q+ + Sbjct: 807 DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865 Query: 941 AAALKAGSFSQIDCRKV-ANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLK 992 F++ + + ++Y+R L + +K ++ + Sbjct: 866 CWMYAH--FTENKGKTIQPGIYYVRSLFSDPFDPSVYHRIERGKSEKVEDFSGYAQAFEE 923 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 924 GLRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] gi|325553726|gb|EGD23404.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] Length = 1094 Score = 235 bits (598), Expect = 4e-59, Method: Composition-based stats. Identities = 125/1062 (11%), Positives = 277/1062 (26%), Gaps = 122/1062 (11%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------------GKKSTILPI 77 LV+ + SV + ++RA +R + E ++T P+ Sbjct: 53 LVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPESPGVQPRATREPL 112 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 ++++ N P RL+ A + R L I D P Sbjct: 113 VRTVHSYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLRELLRGDIADGGGMWPER 166 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 L + A L +++ EDL L W+ A F + ++ + Sbjct: 167 LRPALGMT-GFAVELRNLMLRANERGLGPEDLIDLGYAHDKAEWVAAGRF----AAHYEQ 221 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 ++ A M A +I A T L A + + Sbjct: 222 GMLLRGAVG--------MEAPEATAPALDAAELISAALTAFATDRDLLRRERARVRHLLV 273 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 + I + + + + A + + Sbjct: 274 DDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGDPAQVILD 333 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 V + + +EA +A Sbjct: 334 TNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADT 393 Query: 378 LRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS 432 LR + + + + + + + ++ L G+ + +A PL+ + L S Sbjct: 394 LRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASELPLAKQHGVAGLLS 453 Query: 433 LLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 ++ A+ L+ P+ R +A G++ D L Sbjct: 454 VMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR------DSAEL 507 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + V H L++ + ++ + + PL + + + Sbjct: 508 LRALLVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWAAWQAT 567 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + +L ++ + + ++ + Sbjct: 568 GLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDY----LVEQ 623 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 I G + T+ +L + + +++ G+ EG+WP A+ L + Sbjct: 624 AIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELIE 683 Query: 672 L--NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRL 719 + L +K + + A + R + ++ + + SR++ L Sbjct: 684 ITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDTELVRSRFVDDL 743 Query: 720 LVLGGT------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768 L + R +L P P A + Sbjct: 744 LRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQRAAHQLARLA 803 Query: 769 --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796 S S I+ + N P R Sbjct: 804 EAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWMLERHGG---- 859 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D GTL H L++ P+ + + + + Sbjct: 860 --SDGDNTHAIAGTLVH----TLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 913 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFADRIDLLKSG 911 R + +F + +S + +I V + +E + + G DR++ G Sbjct: 914 RTR--GMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDG 971 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + D KT + + QL+ A G + + + + + K Sbjct: 972 RPVVIDVKTAKAAVTKEQAEQHA-QLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKK 1030 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + T + D+ + + + F++ + Sbjct: 1031 EGSTQRIQSALDDDGVALWENVIHDAAAATRGPT--FLARIN 1070 >gi|256840087|ref|ZP_05545596.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739017|gb|EEU52342.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 959 Score = 235 bits (598), Expect = 4e-59, Method: Composition-based stats. Identities = 139/1055 (13%), Positives = 295/1055 (27%), Gaps = 189/1055 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ + D Sbjct: 191 MIFREVVESMERGES--------------------------------------PDLPYEQ 212 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ + S + + L L + VS+++ S Sbjct: 213 IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382 S K+P +K +++ +I + +A + L Sbjct: 258 YFVSRNLKS-----FPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 313 SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372 Query: 440 -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 L F + ++ H PE ++L NK +L Sbjct: 373 IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + D++++ + L S + Sbjct: 425 -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 D ++ + T++ + + + +K + + ++ R+ D Sbjct: 460 DEEEEDAPQRTNDLEQEFIFHY----FTTVNRMREVMRDACVEMKID--TFFRLLKRVTD 513 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T+ E S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ L Sbjct: 514 TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 T E A+ F H+ R N + T SR++ +L + Sbjct: 574 PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789 R + + + + + S S I ++ P Y Sbjct: 628 MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836 + + + + G++ H ++ EL K + + Sbjct: 688 VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747 Query: 837 QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891 F+ E + + + K LE + K+ I I Sbjct: 748 AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940 + I L GF DR+D + + I DYK+G + + L + Q+ + Sbjct: 807 DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865 Query: 941 AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993 + ++ + ++Y+R L + +K ++ + Sbjct: 866 CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 925 LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311889957|emb|CBH49274.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 1105 Score = 234 bits (597), Expect = 5e-59, Method: Composition-based stats. Identities = 126/1062 (11%), Positives = 277/1062 (26%), Gaps = 122/1062 (11%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------------GKKSTILPI 77 LV+ + SV + ++RA +R + E ++T P+ Sbjct: 64 LVDAAVARIVAGEDPESVLVLTQSRRAATAIREQITERLLAAEHDPESPGVQPRATREPL 123 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 ++++ N P RL+ A + R L I D P Sbjct: 124 VRTVHSYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLRELLRGDIADGGGMWPER 177 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 L + A L +++ EDL L W+ A F + ++ + Sbjct: 178 LRPALGMT-GFAVELRNLMLRANERGLGPEDLIDLGYAHDKAEWVAAGRF----AAHYEQ 232 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 ++ A M A +I A T L A + + Sbjct: 233 GMLLRGAVG--------MEAPEATAPALDAAELISAALTAFATDRDLLRRERARVRHLLV 284 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 + I + + + + A + + Sbjct: 285 DDAQHLDPQAAQLVRLIGTGTASTAIAGDPDQAIFAFRGADPRFLTGLADRGDPAQVILD 344 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 V + + +EA +A Sbjct: 345 TNFRAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADT 404 Query: 378 LRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS 432 LR + + + + + + + ++ L G+ + +A PL+ + L S Sbjct: 405 LRRAHLIDGVPWSEMAIVARSVPRVLPPLRRALLSAGVPVTTAASELPLAKQHGVAGLLS 464 Query: 433 LLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 ++ A+ L+ P+ R +A G++ D L Sbjct: 465 VMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR------DSAEL 518 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + I + V H L++ + ++ + + PL + + + Sbjct: 519 LRALIVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWAAWQAT 578 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + +L ++ + + ++ + Sbjct: 579 GLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDY----LVEQ 634 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 I G + T+ +L + + +++ G+ EG+WP A+ L + Sbjct: 635 AIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELIE 694 Query: 672 L--NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRL 719 + L +K + + A + R + ++ + + SR++ L Sbjct: 695 ITSGLGEVDKTLSRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDTELVRSRFVDDL 754 Query: 720 LVLGGT------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768 L + R +L P P A + Sbjct: 755 LRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQQRAAHQLARLA 814 Query: 769 --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796 S S I+ + N P R Sbjct: 815 EAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRWMLERHGG---- 870 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D GTL H L++ P+ + + + + Sbjct: 871 --SDGDNTHAIAGTLVH----TLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRRELE 924 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFADRIDLLKSG 911 R + +F + +S + +I V + +E + + G DR++ G Sbjct: 925 RTR--GMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDG 982 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + D KT + + QL+ A G + + + + + K Sbjct: 983 RPVVIDVKTAKAAVTKEQAEQHA-QLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHKK 1041 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + T + D+ + + + F++ + Sbjct: 1042 EGSTQRIQSALDDDGVALWENVIHDAAAATRGPT--FLARIN 1081 >gi|314923609|gb|EFS87440.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1] Length = 1061 Score = 234 bits (597), Expect = 6e-59, Method: Composition-based stats. Identities = 118/1003 (11%), Positives = 259/1003 (25%), Gaps = 106/1003 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A S +IAL R + Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453 + L GI + S LS + + + L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + ++ + Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 489 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 608 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT----AEKYIG 682 + ++ + FD + + GL EG WP + S L +E Sbjct: 609 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVATPGWSENLRA 668 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + + RH + + S+ S L L+ Sbjct: 669 ETRLLLVACSRARHQLLSCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 728 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P A S Sbjct: 729 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 788 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R + G+L H I + + PE Sbjct: 789 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 840 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 841 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 898 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEI 956 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991 I V+ + L+ K + + + + +++ Sbjct: 957 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 999 >gi|313822552|gb|EFS60266.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2] Length = 1061 Score = 233 bits (594), Expect = 1e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|314989616|gb|EFT33707.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3] gi|315084653|gb|EFT56629.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2] gi|328754849|gb|EGF68465.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1] Length = 1061 Score = 233 bits (594), Expect = 1e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|327327124|gb|EGE68903.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3] Length = 1061 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|160888167|ref|ZP_02069170.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492] gi|156862302|gb|EDO55733.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492] Length = 773 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 107/733 (14%), Positives = 230/733 (31%), Gaps = 107/733 (14%) Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL 406 ++ + +V I A E +A + +R + + K +A++ + +L V + Sbjct: 91 DVLRKPKNVRFISASTENAQARYLPQWIRGNEELRTPSSFKDTAVVLCNESLLLPVLHSI 150 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND-------FMAIATLVKHPLAKFGF 459 N++I+ G PL+ T S + +L+ + + TL+KHP + Sbjct: 151 PAEVKNVNITMGFPLAQTPVYSFINALVELQTTGYHAGTGRYIYETVITLLKHPYTRQLS 210 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 P E R N+ +LK + Sbjct: 211 PNAETL------EKQLTRDNRFYPLPSELKQ----------------DAFLEQVFTPQNG 248 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 L ++ + + + + Sbjct: 249 IAALCSYLTELLREVAVLYRQEKDVEDIF----------------------NQLYRESLF 286 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + TL + +IETG ++ RL+ + E + + ++G LE+R L Sbjct: 287 KSYTLVNRLLSLIETGELSSVRTDTLKRLLNRLLTSANIPFHGEPAIGMQVMGVLETRNL 346 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLI 698 +F LI+ LNEG PK + F+ ++ + T E A+ F ++ Sbjct: 347 DFRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENVT 406 Query: 699 YTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 ++ + SR++ + V + + GQ + T + + Sbjct: 407 LLYNISSDGLNRGEMSRFMLQFQVESPHNISLEYLEAGQSPQQAREIEIHKTPEMLQQMF 466 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + + +S S + ++ Y R + L + D T GT+FH Sbjct: 467 DAYNIHQRPKAFFSPSALNAYLDCRLKFYYRYVAGLKAPDEVSAEIDSTLFGTIFHRSAE 526 Query: 818 ELI-------KKRINKNTPEINH---LMKQIIDSHFEKENLPP---------HIDIIWRH 858 + ++ + ++ ++ +D+ F+++ +I Sbjct: 527 LVYNELTANGREIRKDDLEQLLKDDVRLQAYVDNAFKEKFFHVPLTEQPEYNGTQLIHSK 586 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIES----IGIHLTGFADRIDLLKSGF 912 + L ++ + + + + M I++ + + + G DR+D Sbjct: 587 VIASYLRQLLRNDLQ-YAPFRMEGMEQDVREMMEIDTPQGKLALQIGGTIDRLDSKGD-T 644 Query: 913 VDITDYKTGDNP-KKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFY 962 + I DYKTG P E ++L P Q L AA L ++ +L Y Sbjct: 645 LRIVDYKTGGTPKTPENIEQLFTPADNRPNYIFQTFLYAAILCRKQSLKVAP----SLLY 700 Query: 963 IRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 I + + ++ + L ++ + + E+ F Sbjct: 701 IHRAASESYSPVIEMGAPRQPKVPVNNFAFFEDEFRERLHGLLQEIFSQEETF--SQTED 758 Query: 1016 EKSNIQSEYDHLA 1028 + ++ L Sbjct: 759 TRKCEYCDFRSLC 771 >gi|313812633|gb|EFS50347.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1] Length = 1061 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 123/1010 (12%), Positives = 263/1010 (26%), Gaps = 120/1010 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991 +G I V+ + L+ K + + + + +++ Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGKGQANPKVDYQSGLVDVPWPDEAE 999 >gi|50842800|ref|YP_056027.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|50840402|gb|AAT83069.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|315105904|gb|EFT77880.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1] Length = 1061 Score = 233 bits (593), Expect = 2e-58, Method: Composition-based stats. Identities = 123/998 (12%), Positives = 255/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A S +IAL R + Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453 + L GI + S LS + + + L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|314966447|gb|EFT10546.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2] gi|315103756|gb|EFT75732.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2] gi|327327269|gb|EGE69045.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1] Length = 1061 Score = 232 bits (592), Expect = 2e-58, Method: Composition-based stats. Identities = 119/1003 (11%), Positives = 258/1003 (25%), Gaps = 106/1003 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A S +IAL R + Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453 + L GI + S LS + + + L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + ++ + Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 488 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 489 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 608 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682 + ++ + FD + + GL EG WP + S L A E Sbjct: 609 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 668 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + + RH + S+ S L L+ Sbjct: 669 ETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 728 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P A S Sbjct: 729 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 788 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R + G+L H I + + PE Sbjct: 789 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 840 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 841 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 898 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEV 956 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991 I V+ + L+ K + + + + +++ Sbjct: 957 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 999 >gi|313792360|gb|EFS40459.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1] gi|313816226|gb|EFS53940.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1] gi|313832979|gb|EFS70693.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1] gi|314960466|gb|EFT04568.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2] gi|314962479|gb|EFT06579.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1] gi|314972836|gb|EFT16933.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1] gi|314983660|gb|EFT27752.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1] gi|315085338|gb|EFT57314.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3] gi|315109403|gb|EFT81379.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2] gi|327329832|gb|EGE71587.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2] gi|327443714|gb|EGE90368.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2] gi|327443749|gb|EGE90403.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2] gi|332675732|gb|AEE72548.1| putative helicase [Propionibacterium acnes 266] Length = 1061 Score = 232 bits (592), Expect = 2e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|255013470|ref|ZP_05285596.1| hypothetical protein B2_06150 [Bacteroides sp. 2_1_7] Length = 959 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 140/1055 (13%), Positives = 292/1055 (27%), Gaps = 189/1055 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADI-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ + D Sbjct: 191 MIFREVVESMERGES--------------------------------------PDLPYER 212 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ + S + + L L + VS+++ S Sbjct: 213 IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382 S K+P +K +++ +I + +A + L Sbjct: 258 YFVSRNLKS-----FPSSMKLPPEEKIKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 313 SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372 Query: 440 -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 L F + ++ H PE ++L NK +L Sbjct: 373 IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + D++++ + L S + Sbjct: 425 -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SALS 459 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 D ++ +F + + IE + ++ R+ D Sbjct: 460 DEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIE------MKIDTFFRLLKRVTD 513 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T+ E S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ L Sbjct: 514 TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 T E A+ F H+ R N + T SR++ +L + Sbjct: 574 PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789 R + + + + + S S I ++ P Y Sbjct: 628 MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836 + + + + G++ H ++ EL K + + Sbjct: 688 VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747 Query: 837 QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891 F+ E + + + K LE + K+ I I Sbjct: 748 AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940 + I L GF DR+D ++ + I DYK+G + + L + Q+ + Sbjct: 807 DYSEIRLKGFIDRVDEVRD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865 Query: 941 AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993 + ++ + ++Y+R L + +K ++ + Sbjct: 866 CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 925 LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|330995680|ref|ZP_08319578.1| hypothetical protein HMPREF9442_00643 [Paraprevotella xylaniphila YIT 11841] gi|329574739|gb|EGG56300.1| hypothetical protein HMPREF9442_00643 [Paraprevotella xylaniphila YIT 11841] Length = 937 Score = 232 bits (591), Expect = 3e-58, Method: Composition-based stats. Identities = 147/1097 (13%), Positives = 288/1097 (26%), Gaps = 250/1097 (22%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F R + L++ L VT+ P KRA + + ++ + P Sbjct: 4 FIRLIAQDLIHRFGTN-----------LRDVTVVFPNKRAGLFMNQQLAAVS-GRPVWAP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 +++ ++ + L + L ++ +P+ Sbjct: 52 RYRTISELFDTLSDFTRCDDI------------LSVCELHRVYAALVPN----------- 88 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDL-------HALKNEKYGMWWLLAA---- 185 P S + + D I+ L L + + A Sbjct: 89 --PESLDRFYGWGEIMLSDFDDIDKHLADPHKLFSNIQSIKELDHSDFLTPRQEEALKHF 146 Query: 186 --------------DFLK------IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 FL + RL E + AE + Sbjct: 147 FEDFSIEGNSRLKEKFLALWNRMDDIYATFNARLKEKGMLYEGALYKDVAEHLAERADRI 206 Query: 226 TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + G RL S + A+ D S Sbjct: 207 PADMTYVFVGFNVLNDVEKRLFSYLQERGQ-ALFYWDYDVMYV-------------GEKS 252 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 T + +L + + L+ D + R I+ + + Sbjct: 253 RFEAGTFIRQNLKEFPNALEETCFDNFK-------NPPRIEFIATTSENAQARYIPQWLD 305 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 P + +A++ + +L + V Sbjct: 306 SALTKPE-----------------------------------QDTAIVLCNESLLQPVLH 330 Query: 405 ELTRFGINI-----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 L +I+ G P++ T S + +LL+ D + Sbjct: 331 SLPDATSPHPVKRTNITMGFPMTDTPVYSFINALLSLQTDGYDRDRRCFRAEQEKIVHSH 390 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 P L + + +N ++ ++SL+ A Sbjct: 391 PYAPLL----EEQEIFCPHAENHALLVYIRSLLEGLAAAFGRQKDRKDDVYN-------- 438 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 L + + + + + ++ S +L T L Sbjct: 439 -QLYHEALYRAHQVVSRFIRLTEDRTLDVQPSTLRRLLRTVLGT---------------- 481 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 T+ E + L ++G LE+R L Sbjct: 482 ------------------------------------TTIPFHGEPAVGLQVMGVLETRNL 505 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI- 698 NF +++ +NEG+ PK F+ ++ L T + I A F I Sbjct: 506 NFRHILMLSVNEGMLPKAVNDTSFIPYHLREVFGLTTIQHKIAVYAFYFYRLVQHTERIT 565 Query: 699 -YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + SR+L++LL + + GQ T + Sbjct: 566 FMYNIATDGLNKNEMSRFLRQLLAETDFPVELKILQSGQAVPADNGMEAAKTPEVMDILR 625 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + + + R S S + I+ P Y +++ ++ + D GT+FH Sbjct: 626 RNYGSGQPGSRPLSPSALNAYIDCPLKFYYQQVARIRTPKDPQNGLDNALFGTIFHEAAE 685 Query: 818 ELIKKRINKNTPEINHLMKQIID-------------------SHFEKENLPPHIDIIWRH 858 + +K +N ++++++ E ++ R Sbjct: 686 LVYQKLAERNPVIRRQDIERLLEGGETALLPYIEASFLKNFFEGREDTVFYNGQLLVARK 745 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRID--LLKS 910 + L + + +++ + I + G DR+D + Sbjct: 746 VMASYLRQLL-FHDSRMEQFVLEEMEQEHHRSVDIISDGHPLSIDIGGKIDRMDTVRMPD 804 Query: 911 -------GFVDITDYKTGDNPKKE-TAQKLIDP---------QLSLEAAALKAGSFSQID 953 + I DYKTG P+K + ++LI P Q+ L A + Q Sbjct: 805 ETTGQKVETLRIVDYKTGGTPEKAISMEQLIQPAEHRPSYIFQIFLYAWVMTG---EQKC 861 Query: 954 CRKVANLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 A LF++ D + N ++ E+ K L ++ L N E PF Sbjct: 862 PVSPA-LFFVHKSNAEDYDPTIVFNRERVTDFSRFKEEFQKMLQGVLEELFNPEIPF--R 918 Query: 1012 LRLSEKSNIQSEYDHLA 1028 K +Y L Sbjct: 919 QTSVPKICAYCDYKLLC 935 >gi|313820643|gb|EFS58357.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1] gi|314924886|gb|EFS88717.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3] Length = 1058 Score = 232 bits (591), Expect = 3e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|228473669|ref|ZP_04058419.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] gi|228274883|gb|EEK13698.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC 33624] Length = 911 Score = 232 bits (591), Expect = 3e-58, Method: Composition-based stats. Identities = 151/1030 (14%), Positives = 318/1030 (30%), Gaps = 161/1030 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F ++I L V P +R+ LR F E K+ I P Sbjct: 2 FLEQVIEDYLENYADTPTG----------EVIFITPHRRSALFLRKIFSEKV-HKAAISP 50 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPES 134 +L +++E + ++Q L +L ++ D + + Sbjct: 51 EFITLDNLLERISGI---------KKMPDLQGLFQLYKVYKEHTESEVDDFEKFVGWGRM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 + K++ ++ I+ E W E+ +F + Y Sbjct: 102 LWKDFSDIDQYLIAYKDIFPYMEAIKEVE-HWS-----VGEELTPMQQRHLEFWRTLGTY 155 Query: 195 WTER---LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + + + + + + G A +++ + Sbjct: 156 YNAIHKVMYQQKQGYQGFIARIAYEQIDAYRQANKEKLHLFVGFNALSVAQEKIIQYI-- 213 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 L+ W+ N S+ + Sbjct: 214 ----------LEEMQADIYWDIEKHFLNNQHSAGYFIENYL------------------- 244 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + K +K ++ + + + Sbjct: 245 ------------------------KRWKYYQRERKPKWITEEKTLPEIKIYGTPKQVNQI 280 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 + L +E +++A++ +D ++ + + + I+I+ G PL T +++ Sbjct: 281 HLLTTLLDEIPEEEWEQTAIVLSDSDMLLPLLQAIDTNKLPINITMGYPLQQTPVHDLIS 340 Query: 432 SLLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + I I L++ P E Y + + I+DL Sbjct: 341 AYFKLYISGRWYHKEIKALLEQPFLTNLLSENYKKDTI--TYINEHNFSYVYKKILDL-- 396 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + EED+EL LL D ++ + I Sbjct: 397 --------------------YVKEEDRELINLLFD--------------DEKDISVSKLI 422 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + KL +++ + + NL + L + ++ + I Sbjct: 423 ENVIKLLFFIKESLEKSDKENVLNLEYIYNFYELFNQIH-YLQKKYNYIDSVKSLYYIYN 481 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 L+ + + + E L I+G LE++ ++F +++ +NEG++PK A N + +++ Sbjct: 482 DLLVKQKLSFRGEPLRGLQIMGVLEAQNIHFKNVLITSMNEGIFPKGNAVNSLIPFDVRA 541 Query: 671 DLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFF 728 +L L T ++ ++ F T I + + + SR++ +LL Sbjct: 542 NLGLPTYKESDYMYSYYFYRILQHTHRAILLYNTDTDGLRGSERSRFVLQLLSDYRIRSQ 601 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + + + + +S S + + +P Y + Sbjct: 602 VKFPEVKIIKQNQIEIEKDKNIIEKLVAIATKIDPKHRK-GFSPSSLTTYVRNPIDFYQQ 660 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMKQIIDSHF 843 +IL + ++ + GT+ H I+ L +N KN EI +++ + F Sbjct: 661 QILDIRDEAEVEEIVEDRSLGTIIHRILELLYTPYVNSIISKKNIDEIRKKVRETTEIVF 720 Query: 844 EKENLPPHI---DIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIH- 897 ++ I +I + + FL +EK S + + V ++ I+ Sbjct: 721 KEYQQNDEISGKNIFVQQTIEEYVMKFLAIDEKNVSENVVTLLSVEQKIQIDIKFDEFPF 780 Query: 898 ---LTGFADRIDLLKSGFVDITDYKTGDNPKKETA--------------QKLIDPQLSLE 940 G DR++ + + I DYK+G +E + QL + Sbjct: 781 PICFNGTIDRVERRGN-DIYIVDYKSG-IVDREDVKLSDKGWENLILDYKYSKAFQLLMY 838 Query: 941 AAAL-KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD-ELSEKSLKNLIEIV 998 A L K G D V N + RLK F DK+ D ++ E+ + LIE++ Sbjct: 839 AYLLFKMGIIQDADNVYVGNYSFRRLKLGFIGFRNQKDKEISLVDSQVREEFEQKLIELL 898 Query: 999 TLLQNGEQPF 1008 + + E PF Sbjct: 899 KEIYDPELPF 908 >gi|289428079|ref|ZP_06429782.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|289158679|gb|EFD06880.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|313825513|gb|EFS63227.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1] gi|314978139|gb|EFT22233.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2] gi|315088602|gb|EFT60578.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1] Length = 1058 Score = 232 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|239833144|ref|ZP_04681473.1| double-strand break repair protein AddB [Ochrobactrum intermedium LMG 3301] gi|239825411|gb|EEQ96979.1| double-strand break repair protein AddB [Ochrobactrum intermedium LMG 3301] Length = 406 Score = 232 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 148/408 (36%), Positives = 214/408 (52%), Gaps = 34/408 (8%) Query: 1 MHNKKPN-----VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR 55 M ++P +F+I P +PF ALL G LVE F +P +PL LA+ TIYVPT+R Sbjct: 4 MSARRPRDGKQRLFSIPPGTPFLPAFARALLEGRLVEGFPGNPSDPLALANATIYVPTRR 63 Query: 56 AIQELRSEFIEITGKK-------------------STILPIIKSLGDVVEEKFTADLLLS 96 A + LRS ++I K S ILP IK LGDV E+ + S Sbjct: 64 AARALRSILVDINPAKGLSAKAVSGFAFGNASEKKSAILPTIKPLGDVDEDAAFFNAGSS 123 Query: 97 Y--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 ++NPP+ +RLL LARLI WR LP ++ L+ +S+P + ++AIWLA++LA Sbjct: 124 GVFDINPPIGTAERLLLLARLIRPWRESLPSHVRALFGVDDVSVPATTSDAIWLARDLAG 183 Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214 ++D +ET+ KW +L + E WW + FL I + W + L E S+P ++ L Sbjct: 184 LMDQVETDGAKWSELATIAPEDLADWWQVTLGFLNIVTNLWPDILAERKLSNPAAHRNDL 243 Query: 215 MRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 + +E + L GP+I+AGSTGSIPATA L+S +A PNGA+VLPGLD + A W Sbjct: 244 IWSEVKRLRTHPPAGPVIVAGSTGSIPATAELISAIAELPNGAVVLPGLDRDLDDAAWQL 303 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + + N + HPQ+ L KLLD + REDV+ L ++ R V+S++ P Sbjct: 304 L-----ASATDNPSTYGHPQFGLRKLLDAMQTLREDVEHLDDMPASKRLRERVVSEALRP 358 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 +T+D +E ++ + LIEA NER L Sbjct: 359 AETTDAWGKLDMEAD--SLHAAAQTIDLIEAANERGGGAGRRSRLARC 404 >gi|327329921|gb|EGE71675.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1] Length = 1058 Score = 232 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 123/1010 (12%), Positives = 263/1010 (26%), Gaps = 120/1010 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991 +G I V+ + L+ K + + + + +++ Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGKGQANPKVDYQSGLVDVPWPDEAE 996 >gi|262381670|ref|ZP_06074808.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296847|gb|EEY84777.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 959 Score = 232 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 140/1055 (13%), Positives = 292/1055 (27%), Gaps = 189/1055 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + P +R + E+ P I ++ D+ + ++ Sbjct: 21 SRLAFVFPNRRTGLFFQKYLSEVADT-PLFSPTILTINDLFIQLSGKQSADRISM----- 74 Query: 105 NIQRLLELARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L L + I + + E L+ + A+ L + + E Sbjct: 75 ----LFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIE 130 Query: 164 KKWEDLHALKNEKYGMWWL---------LAADFLK------IASKYWTERLVELNASSPV 208 ++ L + +W FL + + L Sbjct: 131 NDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEG 190 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ + D Sbjct: 191 MIFREVVESMERGES--------------------------------------PDLPYER 212 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ + S + + L L + VS+++ S Sbjct: 213 IVFVGLNALSVSEE---------------RFLAQLQKREIADFYWDYVSDKVTDPDNKAS 257 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------RMSL 382 S K+P+ +K +++ +I + +A + L Sbjct: 258 YFVSRNLKS-----FPSSMKLPSEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMS 312 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK--- 439 E ++A+I D +L V + I+++ G PL+ T +S++ +L Sbjct: 313 SEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRY 372 Query: 440 -----LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 L F + ++ H PE ++L NK +L Sbjct: 373 IDRNPLFYFRDVLPVLNHRYILSTSPEI-----ISSLVKEITENNKIYISHTELGKT--- 424 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + D++++ + L S + Sbjct: 425 -------------PLLEILFTPVTGVEAFSDYLIKVLEELNKVM------------SSLS 459 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 D ++ +F + + IE + ++ R+ D Sbjct: 460 DEEEEDATQRTNDLEQEFIFHYFTTVNRMREVMKDARIE------MKIDTFFRLLKRVTD 513 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T+ E S L I+G LE+R L+FD LI+ +NEG++P+ A N F+ ++ L Sbjct: 514 TITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGL 573 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 T E A+ F H+ R N + T SR++ +L + Sbjct: 574 PTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYH------YEVP 627 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP---RTYSFSEIKQLINDPYAVYARR 789 R + + + + + S S I ++ P Y Sbjct: 628 MRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSV 687 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRINKNTPEINHLMK 836 + + + + G++ H ++ EL K + + Sbjct: 688 VEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIAR 747 Query: 837 QIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--- 891 F+ E + + + K LE + K+ I I Sbjct: 748 AFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLTP-FVYIESERKINGLISLS 806 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLE 940 + I L GF DR+D + + I DYK+G + + L + Q+ + Sbjct: 807 DHSEIRLKGFIDRVDEVLD-AIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMY 865 Query: 941 AAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCI------TNDKKKYSADELSEKSLKN 993 + ++ + ++Y+R L + +K ++ + Sbjct: 866 CWMYAHLTENKGKTIQP-GIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEG 924 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + + N E PF + K+ + + Sbjct: 925 LRGCLDEIFNPEIPFT--QTPTGKACSYCPFKGIC 957 >gi|314986297|gb|EFT30389.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2] Length = 1058 Score = 232 bits (590), Expect = 4e-58, Method: Composition-based stats. Identities = 123/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I + + P + R + G+L H I Sbjct: 779 AGEIELSASHIGEFLACPRGWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|315077695|gb|EFT49746.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2] Length = 1061 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLA 399 + + VA + A + IA LR + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADSVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|313827480|gb|EFS65194.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2] Length = 1058 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAAALRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|315080857|gb|EFT52833.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1] Length = 1061 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 132/998 (13%), Positives = 262/998 (26%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRI-------------V 94 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 VS +RLL R L +PE + A A ++ + + E Sbjct: 95 VSPSKRLLTAPEQEFRMRELLAARDMSDWPEE----LRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHETLWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSLARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|313764134|gb|EFS35498.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1] gi|314914864|gb|EFS78695.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4] gi|314929975|gb|EFS93806.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1] gi|315101552|gb|EFT73528.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1] gi|327452205|gb|EGE98859.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3] gi|328753881|gb|EGF67497.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1] Length = 1061 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 428 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 488 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 489 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 548 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 602 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 661 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 662 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 721 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 722 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 781 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 782 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 833 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 834 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 890 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 891 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 949 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 950 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 987 >gi|332876742|ref|ZP_08444500.1| hypothetical protein HMPREF9074_00220 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685301|gb|EGJ58140.1| hypothetical protein HMPREF9074_00220 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 937 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 142/1068 (13%), Positives = 299/1068 (27%), Gaps = 192/1068 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F R + L++ L VT+ P KRA + + ++ + P Sbjct: 4 FIRLIAQDLIHRFGTN-----------LRDVTVVFPNKRAGLFMNQQLAAVS-GRPVWAP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 +++ ++ + L + L ++ +PD Sbjct: 52 RYRTISELFDSLSDFTRCDDI------------LSVCELHRVYAALVPD----------- 88 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDL-------HALKNEKYGMWWLLAADFLK 189 P S + + D I+ L L + + + Sbjct: 89 --PESLDRFYGWGEIMLSDFDDIDKHLADPHKLFSNIQSIKELDHSDFLTPRQE-----E 141 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 ++ + +E N L + I A Sbjct: 142 ALKHFFEDFSIEGN--------SRLKEKFLALWNRMDD---IYATFN------------- 177 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 A ++ G T++ + +L +L + + Sbjct: 178 ARLKEKGMLYEGALYKDVAEHLAERTDRIPADMTYVFVGFNVLNDVEKRLFSYLQKRGQA 237 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + +S + +F+ + + + LE + K + I +E Sbjct: 238 LFYWDYDVMYVGEKSRFEAGTFIRQNLKE--FPNALEETCFDNFKNPPRIEFIATTSENA 295 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A I L +L E ++ +A++ + +L + V D ++ P+ T Sbjct: 296 QARYIPQWLDSALTEPEQDTAIVLCNESLLQPVL------HSLPDATSPHPVKRTNI--- 346 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + + + + L+ R A + +R + + + + Sbjct: 347 ------TMGFPMTDTPVYSFINALLSLQTDGYDRDRRCFRAEQEKIVRSHPYAALLEEQD 400 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 L+ +I + L + Sbjct: 401 IFCPHAEN-----------------------HALLVYIRSLLEGLAAAFGQQKDR----- 432 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-SCIKANAIEWIDI 608 + L+ E + + I T + + Sbjct: 433 ------------------KDDVYSQLYHEALYRAHQVISRFIRLTENRTLDVQPSTLRRL 474 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + ++ T+ E + L ++G LE+R LNF +++ +NEG+ PK F+ + Sbjct: 475 LRTVLGTTTIPFHGEPAVGLQVMGVLETRNLNFRHILMLSVNEGMLPKAVNDTSFIPYHL 534 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTD 726 + L T + I A F I + SR+L++LL Sbjct: 535 REVFGLTTIQHKIAVYAFYFYRLVQRTERITFMYNIATDGLNKNEMSRFLRQLLAETDFP 594 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + + GQ T + + + + R S S + I+ P Y Sbjct: 595 VELKILQSGQAVPADNGMEAAKTPEVMDILRRNYGSGQPSSRPLSPSALNAYIDCPLKFY 654 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID------ 840 +++ + + D GT+FH + +K +N ++++++ Sbjct: 655 YQQVAHIRQPKDPQNGLDNALFGTIFHEAAELIYRKLTERNPVIRRQDIERLLEGGETTL 714 Query: 841 -------------SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E ++ R + L H+ + Sbjct: 715 LPYIEASFLKNFFEGREDTVFYNGQLLVARKVMASYLRQLLAHD-SRMEQFVLEEMEQEH 773 Query: 888 KMAIE------SIGIHLTGFADRID--LLKS-------GFVDITDYKTGDNPKKE-TAQK 931 +++ + I + G DR+D + + I DYKTG P+K + ++ Sbjct: 774 HRSVDIISDGHPLSIDIGGKIDRMDTVRMPDETTGQEVETLRIVDYKTGGTPEKAVSMEQ 833 Query: 932 LIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC--ITNDKKK 980 L+ P Q+ L A + Q A LF++ D + N ++ Sbjct: 834 LVQPAEHRPSYIFQIFLYAWVMTG---EQKRPVSPA-LFFVHKSNAEDYDPTIVFNRERV 889 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E K L ++ L N E PF K +Y L Sbjct: 890 TDFSRFKEDFQKMLQGVLEELFNPEIPF--RQTSVPKICAYCDYKLLC 935 >gi|315092776|gb|EFT64752.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1] Length = 1058 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 119/1003 (11%), Positives = 258/1003 (25%), Gaps = 106/1003 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMAARLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A S +IAL R + Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTDAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHP 453 + L GI + S LS + + + L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + ++ + Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAE 485 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 486 LDTACEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 545 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRD 605 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682 + ++ + FD + + GL EG WP + S L A E Sbjct: 606 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 665 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + + RH + S+ S L L+ Sbjct: 666 ETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSLTELVGELR 725 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P A S Sbjct: 726 QVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEIELS 785 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R + G+L H I + + PE Sbjct: 786 ASHVGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AENMDQWSLPEA 837 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 838 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 894 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 895 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEV 953 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSL 991 I V+ + L+ K + + + + +++ Sbjct: 954 IGPASVSGAELVHLRIGAGKGQANPKIDYQSGLVDVPWPDEAE 996 >gi|189501876|ref|YP_001957593.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus 5a2] gi|189501882|ref|YP_001957599.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus 5a2] gi|189497317|gb|ACE05864.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus 5a2] gi|189497323|gb|ACE05870.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus 5a2] Length = 969 Score = 231 bits (589), Expect = 5e-58, Method: Composition-based stats. Identities = 135/1076 (12%), Positives = 292/1076 (27%), Gaps = 180/1076 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F E+ L V + +P ++A++ + + LP Sbjct: 8 FLEEVTEDLFQQYTVA----------DITRSIFILPGQKAVERFQQVLCNKIDNPA-WLP 56 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + +L +E+ + + +L L+ L + ++ Sbjct: 57 QVLTLEPWIEQCSKITIAPNLDL---------LVLLYQTFQQFKAA-------------- 93 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG-----MWWLLAADFLKIA 191 L DI++ L A E+ A + Sbjct: 94 --DEPFERFYGWGNMLLQDFDILDKCLVDPNQLFANLYEQKAITLTYEHLSEAQK--EAI 149 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 +W + + TA L+ Sbjct: 150 QSFWKSF---------EKRLSTQQQDFLKLWEILPHIY---------KRFTAELIKKGIG 191 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + N E N K+ +L Sbjct: 192 YAGLC---------YRELYNNLTKELLINYKHFFFIGFNALHPVEEKIFAWLHSNISTQF 242 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + M ++ T T + IQ F + EA+ E+ Sbjct: 243 YWDTDAYYMNDKNQEAGYYLRHHQTKPYFQTSFKKPFPARIQNNFKKINFFEANTAAEQV 302 Query: 372 ISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 ++ L+ +++ ++ ++ A+ +L + L +++ + G P++ T Sbjct: 303 ELVSSQLQQLINQEGNSFQPHQAVIVLANEDLFLPMLHALPTNLQSVNTTLGYPITYTAS 362 Query: 427 SSILTSLLNAI---------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 ++ +L AI L+KH K+ + + Sbjct: 363 YQLIEQILALQITTQQPTCPAGYFPTQAIIALLKHTPIKY-----CNQALASETIQLLTN 417 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + L + R + ++A ++D + L Sbjct: 418 HYTSYTSQKILSEASE-----------LYQAIFRPASSTIDIAQYVIDVMTLVKAQLEA- 465 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + L E G+ + L + Sbjct: 466 ------------------------------QEDSSLALEEEALGELIKQLSYIQVIITPL 495 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPK 656 K + +I + +LI + K + S+ + IL E+ L+F + + G+NEG P Sbjct: 496 YKVSIERFIQLFRQLIRSLQLTFKEKTSAKGIQILRIWETANLDFKYVFIVGMNEGNLPA 555 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIG-QAAHDFEMAN-GTRHLIYTRSL-RENNIPTIAS 713 +TA+ F+ ++ L T + + A+ F + + T + P S Sbjct: 556 STAQGSFIPYNLRKGYGLPTMDIFQATLDAYYFYRLLQRAQQVYITYNTPSSATNPKEVS 615 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 R+L +LL + + K + + R+ + + Sbjct: 616 RYLWQLLYESKLPIEQHYINTAIYTPTICPIIIKKDDGVLLKLEEFVVKNGQEKRSLTPA 675 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKKR--------- 823 + + Y R IL+L +D D G+LFH ++ +L Sbjct: 676 ALNTYLGCSLRFYFRYILQLQVPQQLLIEDTDAIRFGSLFHKVMEKLYAPLQIARKGSMV 735 Query: 824 INKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + ++ ++ II F +I + + K+ + LE ++K Sbjct: 736 QKNDLEKLKSQLQAIIAEVFSNALYSNHILQWGGEHLIEQEVMQKVVNKILEIDKKHTP- 794 Query: 878 IEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929 + + + + ++ + L+G DRID + + + DYKTG E Sbjct: 795 FTLVGIEVGKQQSLMIHFRLTSDKVVALSGIIDRIDQKQD-SIRVIDYKTGGDEKYVEQI 853 Query: 930 QKLID----------PQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 L D Q A ++ + + + Sbjct: 854 SNLFDRSTAQKTKVIFQTFFYAWLFKKHANNSAYKIMPGIVNTRSAFNTNFDPRLMVKQV 913 Query: 976 NDKKKYSADELSE---KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + K ++++ + L ++ + + + PFI Y + Sbjct: 914 DTKDYRYIEDITPYQSEFETGLELLLQEILDPQIPFI--QTEDHFQCATCPYKRIC 967 >gi|86131070|ref|ZP_01049669.1| probable DNA repair protein [Dokdonia donghaensis MED134] gi|85818481|gb|EAQ39641.1| probable DNA repair protein [Dokdonia donghaensis MED134] Length = 896 Score = 231 bits (589), Expect = 5e-58, Method: Composition-based stats. Identities = 138/1010 (13%), Positives = 302/1010 (29%), Gaps = 176/1010 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 ++ +P++RA LR + + K++ P I S+ + + + +L Sbjct: 19 NLIFILPSRRAGNTLRKKIAQR-AHKTSFAPQIFSIEEFISHITGLKSASNVDL------ 71 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + L K +S A+++ + I+ Sbjct: 72 ---IFNLFESYTEVVEKE--------------KLVSFQTFCGWAQSILSDFNEIDRFLLD 114 Query: 166 WEDLHAL--KNEKYGMWWLLA--------ADF---LKIASKYWTERLVELNASSPVGYQI 212 + + ++ W + DF L + E+ + +A Sbjct: 115 QKKVFNHLKDIKELSDHWSSSTNEIVVNYIDFWNNLLEIYTVFCEKSLHTDAVHQGYIYR 174 Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 + + +++ V G +N Sbjct: 175 QAVEVIEHY---------------------------ISSSTQVRHVFLG---------FN 198 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 + I + Y + + + Sbjct: 199 ALNTAEQQIIQAILASGNSEIY------------------WDTEKSFIKNPYHETNLFIK 240 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392 + + + ++ + +A ++ L + + K+A+I Sbjct: 241 KYKRDWAYYSANDFSWSFDNYSTSKNINTYACSQDVLQAKTLGTILEKTSQDALSKTAII 300 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIAT 448 D L V L ++I+ GIP+ T +S LL+ + + Sbjct: 301 LGDEALLLPVLNALPTHIHKVNITMGIPIGKTPTASFFEQLLSLKKNPQTNGYYYKDVLK 360 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 ++++P+ + + I ++L+ + + N + Sbjct: 361 VLRNPIT---------QALLKETATTLQQEIISKNLIYISTGVLLNTVNQEHLNIAKTLF 411 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 ++ L Q I+ L T DE Sbjct: 412 LEWNDNPKLAVSNCL-----QIISDLRTIY----------------------------DE 438 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + + + + ++E I + +I +I ET+ K + L Sbjct: 439 TQNSLQVEYLYGFYVAFNKLKTLMEVREHIS-DISTFILFYRDIISSETIDLKGDPDQGL 497 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHD 687 I+G LESR+L++D +IL +NEG+ P ++N ++ ++ +L T EK A H Sbjct: 498 QIMGVLESRVLDYDHVILTSVNEGILPSGKSQNSYIPYDLKKLYDLPTYSEKDAVYAYHF 557 Query: 688 FEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + + + + + + + SR+++++ G + ++ Sbjct: 558 YHLLHRASTVDLLYTTHSSGLGSSEQSRFIRQIEEEGIHNLTKYTVTPASHSTSKKSQVI 617 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 T + + R S S + + +P Y R IL +D ++ Sbjct: 618 AKTPEV------VTKLSQFLKRGISPSALTTYLRNPVLFYERYILGIDSSDEVEETVAAN 671 Query: 807 DRGTLFHNIITELIKKR-----INKNTPEINHLMKQIIDSHFEKENLPPHIDI----IWR 857 GT+ HN + EL K + ++Q + + F+ E HI I Sbjct: 672 TMGTIVHNTLEELYKPHIGIILTEDILKNLIKGIEQEVRNQFKSEYGLTHIQEGKNKIIY 731 Query: 858 HLFHKISHSFLEHEEKIQSSIEKI---FVNIPAK-MAIESIGIHLTGFADRIDLLKSGFV 913 + + H++L+ E + + + V + +++ I L G D ++ +G + Sbjct: 732 AVICRYVHNYLKREISLLKKGDTVIIQAVEDDLRDISLTD-TITLRGKVDLVEQR-NGHL 789 Query: 914 DITDYKTGDN-------PKKETAQKL-----IDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +I DYKTG E Q+ + A L Q + Sbjct: 790 NIIDYKTGKVTQTDLNLKSYEDLLLPEGKFEKAFQVLMYAFMLHKKKPLQF-PVNAGIIS 848 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + L+ F +++ +AD L + L +V + + PF Sbjct: 849 FKNLQSGFLPFKYNRNQEI-TADTLL-EFEAVLKRLVKEILDPSIPFTER 896 >gi|295130854|ref|YP_003581517.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|291375110|gb|ADD98964.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|313771952|gb|EFS37918.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1] gi|313801692|gb|EFS42932.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2] gi|313807184|gb|EFS45677.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2] gi|313809681|gb|EFS47415.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1] gi|313819378|gb|EFS57092.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2] gi|313830017|gb|EFS67731.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1] gi|313838406|gb|EFS76120.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1] gi|314967656|gb|EFT11755.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1] gi|314975742|gb|EFT19837.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1] gi|315095787|gb|EFT67763.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1] gi|315098849|gb|EFT70825.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2] gi|327442648|gb|EGE89302.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1] gi|327453454|gb|EGF00109.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1] gi|328761487|gb|EGF75011.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL099PA1] Length = 1058 Score = 231 bits (588), Expect = 5e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|314920397|gb|EFS84228.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3] gi|314956489|gb|EFT00777.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1] gi|314957333|gb|EFT01436.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1] gi|327452696|gb|EGE99350.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2] gi|328752852|gb|EGF66468.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2] Length = 1058 Score = 230 bits (586), Expect = 9e-58, Method: Composition-based stats. Identities = 124/998 (12%), Positives = 257/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|315223786|ref|ZP_07865635.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] gi|314946232|gb|EFS98232.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] Length = 909 Score = 230 bits (586), Expect = 9e-58, Method: Composition-based stats. Identities = 139/1015 (13%), Positives = 296/1015 (29%), Gaps = 172/1015 (16%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + KR L+ F E +TI P + D+ Sbjct: 17 DKIERLVFVTTGKRPALFLKKHFAEQIKH-ATIAPEFIGIADLFTRISDLQ--------- 66 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 P+SN+ L E + PD ++ + + I+ Sbjct: 67 PISNLPLLFEFYDCYVKTCKDTPDSFEE---------------FLSWGQTALKDFSEIDQ 111 Query: 162 EEKKWEDL-HALKNEKYGMWW----------LLAADF---LKIASKYWTERLVELNASSP 207 + + + K W F L +L E+ Sbjct: 112 YLVNPDKIFPYIHVLKEVEHWSGMDELSEMQKKHLAFWNSLGDYYFALNSKLTEMGKGYG 171 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + ++L + I G A Sbjct: 172 GFIAKKAVEELPKYLQTHSNSIHIFVGFNALSKAE------------------------- 206 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 Q+ + +L L + + + + Sbjct: 207 -------------------------QHVIQSILMDLGGE----IYWDGDTYFLNNPAHDA 237 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387 S I + + ++ L +A S+A L+ + + + Sbjct: 238 GFFLRKYINSWRYYQTHKPKFIQSNYEKEKELYLTGVPKSINQAHSVAELLKNTPAKALE 297 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-NDFMAI 446 K+ALI AD NL V + +++I+ G PL T + + + + I Sbjct: 298 KNALIIADENLLIPVLQAVQP-KTSVNITMGYPLQQTPLNDLFVAYFRLHLSKSFYYKDI 356 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ P E + + N L V + Sbjct: 357 LNLLSQPFLHTLLKE----EVVCHISEFIKKHNLTYITRKKLFESVDETEHEMLTLLFP- 411 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 D + L++ I IT + + K + ++ Sbjct: 412 ---------DAKGKALIITLIDNAITLIYSLKAQIDPESNTHLLTQ-------------- 448 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + L + ++ E + ++ ++ + E Sbjct: 449 ---------EYAYRFFQLFNQLKQLQEQ-YGYIDSVKTLYHFYLDVLQKSSLNFRGEPLE 498 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L ++G LESR L+F+ +I+ +NEGV P + + + ++ +L L T ++ ++ Sbjct: 499 GLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDSSLIPYDVKYELELPTYKERDAVYSY 558 Query: 687 DFEM-ANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWTR 743 +F + + N++ + SR++ +LL + + K + Y R Sbjct: 559 NFYRILQRAKQVHLFYDTEMNSLKSKEKSRFILQLLAEKISTHKVVHQIKAPEVYPAVLR 618 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 L+ + S S + I +P Y +++L++ ++ Sbjct: 619 PLNIKKTTSVI-----DALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEEKEVEETV 673 Query: 804 DRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQIIDSHFEKENLPPHIDI 854 + G + H + +L +N+ P + +++ + + + + Sbjct: 674 EVRTFGNIVHGTLEDLYTPFLNEILTEEHIKKMQPLVLPTIEKCFEEEYRSTDFRTGKNW 733 Query: 855 IWRHLFHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDL 907 + ++ K SFL E K + I +++ K+ ++ ++ G DR+D Sbjct: 734 LIFNVIEKYVRSFLTLELNEIKSGTEIIPLYLEQKIKIPFQASHLPFLVNFKGIIDRVDR 793 Query: 908 LKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 +G + I DYKTG + + + QL + F + Sbjct: 794 R-NGVLHIIDYKTGIVEETDVRIKDWENLITDIKYGKAFQLLTYTYMITQ-HFKIDEPMI 851 Query: 957 VANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 VANL + RL++ F I K + + +++ + + E+PF Sbjct: 852 VANLSFKRLQKGFLRFHTHIDKVKDCDVTAQTLALYSQYTEQLLQEIFDIERPFY 906 >gi|302385433|ref|YP_003821255.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1] gi|302196061|gb|ADL03632.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1] Length = 1148 Score = 230 bits (586), Expect = 9e-58, Method: Composition-based stats. Identities = 120/941 (12%), Positives = 265/941 (28%), Gaps = 128/941 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L ++ + E L+ + + + + + + + + ++ Sbjct: 117 GFISQLKSMLSELYQYGITPEMLNQGIPDNVSPMLRQKLSDISVIYQGFKDYIRDKYITT 176 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 ++ I + G TG P R++ + N+ IV +D Sbjct: 177 EEIL--DVLCRVLPRSELIKNSVITLDGYTGFTPVQYRILKLLLNYSKRVIVTVTIDPSE 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL--GNVSNEMYGRS 324 S + L +L +E L + Sbjct: 235 --------NLNRKTGVQELFHMSRQMIWKLNELAKETGTGKEKDILLKNHPAVRFLGAAV 286 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + + D ++ K + Q + LI+A N +E + ++ + Sbjct: 287 TESREGTYGENALDFLEQNLYRYKGISCQDAPGSIRLIKAINPMDEVAFVIRSIEEEIRY 346 Query: 385 NK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + A+IT D + + + GI + + ++ + + I K Sbjct: 347 QGLRYRDMAVITGDIGGYSNEIIHQFQLNGIPYFLDDKKSILKNSMVELIRAAMEIIQKD 406 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + ++ ++ L E+ R +N + + +RG K + Sbjct: 407 FTYESVFRYLRTGLITAKEDEEKADRLENYVIAMGIRGFKKWDSQWE------------- 453 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTV 558 W E + E + I+ + L T+ +++ T Sbjct: 454 ------GWYRGGKELNLEELNRYREEIMAPLRRLKAAFGETDSTVASMTRAVTALLMETG 507 Query: 559 TCLQNVC-----LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + + + + + LF ++ + E+ +I+ Sbjct: 508 IQEKMLAYEEKFRAMGEFTLAMEYSQVYGLVMDLFDRLAGLLGEEHVSRREYGEILDAGF 567 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 V + + +RL + L G+N+G+ P K+ + + L Sbjct: 568 SEIQVGLIPATLDRVVVGDITRTRLDHIKVLFFVGVNDGIVPVKKEKSSLFTDREREFLG 627 Query: 674 ------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLREN-NIPTIASRWLQRLLVLGG 724 TA + + +A L+ + + S + L L Sbjct: 628 DHQMELAPTAREEGFRQRFYLYLALTKPEKRLVLSYAAMNGSGKSLRPSTLIGELKKLFP 687 Query: 725 TDFFDN---------LKKRGQCYLDWTR------------KLDYTTKQPHYKRPKPFPPL 763 + +++ D R +L + R + Sbjct: 688 GLSEASPSRLSVPLTMREAKDRLADGLRDYGKRGEERRFLELLRAFLKSGEHREEGKRLT 747 Query: 764 EAQPR--------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 EA + S + ++Q + YA + L+L + + Sbjct: 748 EAAFHAYEEKGIGKLAAKALYGSVISGSVTRMEQYASCAYAHFLSYGLELMERQ--EYEL 805 Query: 804 DRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKENL----PPHI 852 D G LFH+ I ++ + E L+ + + E+ Sbjct: 806 AAMDIGNLFHDAIGLWFQRMKEEGRDFKTLTEEERKSLVHECVTKVTEEYGNTILKSSAR 865 Query: 853 DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE---SIGIHLTG 900 + +I+ + E+ + + + M I IHL G Sbjct: 866 NAYLAGKVERITDRTVWALSEQLKKGDFVPVGFEVSFSAADQLKAMRIPLSKEEAIHLRG 925 Query: 901 FADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDC 954 DR+DL + I DYK+G + + QL + AA + Sbjct: 926 RIDRLDLCEDEEAVYVKIIDYKSGSTSFDLSSLYYGLQLQLVVYMDAALEMEERRVEDKP 985 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A +FY + D + + + + + +E+S K K L Sbjct: 986 VVPAGIFYYNIN-----DPVIDREGEMTDEEVSGKIQKQLR 1021 >gi|154492641|ref|ZP_02032267.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC 43184] gi|154086946|gb|EDN85991.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC 43184] Length = 976 Score = 230 bits (586), Expect = 1e-57, Method: Composition-based stats. Identities = 150/1067 (14%), Positives = 312/1067 (29%), Gaps = 149/1067 (13%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF ++ + E + + P +R + E++ +K Sbjct: 3 PFLYQVASLFYSEYGAEV-----------SRLAFVFPNRRTGLFFQKYLSEVS-EKPLFS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPES 134 P I ++ D+ + ++ L +L + L + + E Sbjct: 51 PTILTINDLFVQLSGKQAADRISM---------LFKLYDIYLRHSGSSETFDEFLYWGEM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L+ + A+ L + + E + L + + + Sbjct: 102 LLNDFDDIDKYMADARMLFTNVTDLREIENDFSFLSP--------------EQIAAIRTF 147 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W+ + + +P Q + I+ A T A ++T Sbjct: 148 WSSFYPKGD--TPNQEQFLAVWQ------------ILYALYTDLREA----LATEGKGYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G I ++ + T + + L L + Sbjct: 190 GMIFREVVEQMEKDECCDL------PYTKVVFVGLNALSVAEERFLSGLQKRGIADFYWD 243 Query: 315 NVSNEMYG-RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 S ++ + + + + I N + +I + +A Sbjct: 244 YASPKVTDPDNKASYFVERNLRQFPSQLIENGQLTIDNEDDDKKKIEVIGIPSGIGQAKQ 303 Query: 374 IAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + L E++ + A+I D +L V + I+++ G PL+ T + Sbjct: 304 VCSILNELCKEDEMSAEEALRTAVILPDEHLLIPVLNAIPEQIKRINVTMGYPLAGTPVA 363 Query: 428 SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 S++ +L + F + ++ H PE + L N Sbjct: 364 SLMEYILALQKNIRYVDRRPVFYFRDVLPILNHRYISTTSPE-----VVSNLVKNISENN 418 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 K DL + D+++ + L Sbjct: 419 KIYISYDDLNKT----------------PLLSILFTPVTAVETFSDYLINVLQELNK--A 460 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + S++ T+ T + + ++ T++ + + E +K Sbjct: 461 VEGGKLKVESVNSDTEPLSTFNSQLSTINDIEQEFIFHYFA--TVNRMKEVMREANVEMK 518 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + ++ R+ D T+ E S L I+G LE+R L+FD LI+ +NEG++P A Sbjct: 519 ID--TYFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPLRKA 576 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717 N F+ ++ L T E A+ F H+ R N + T SR++ Sbjct: 577 ANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIYRASHVSLLYDTRSNGLQTGEVSRFVH 636 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 +L + L T++ + R S S + Sbjct: 637 QLHYHYEEPIQNKLVVYNVSSSKTPALQVAKTEEV---MNRLADFRSGGTRAISASAVNT 693 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------------KKRI 824 ++ P Y + + + + G++ H ++ EL K Sbjct: 694 YLDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQPFCGKMVTADLLKAIR 753 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKISHSFLEHEEKIQSSIEKIF 882 + + + F+ + + P + + K LE + K Q+ I Sbjct: 754 KDTPMLTGAVARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEKVLERDAK-QTPFRYIE 812 Query: 883 VNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDP--- 935 K I L GF DRID ++ V I DYK+G + + + L D Sbjct: 813 SEKKIKCLFPLTDKSNIQLKGFIDRIDEVRD-VVRIIDYKSGGGTTQFTSVEALFDKADT 871 Query: 936 -------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT-------NDKKKY 981 Q+ + A + ++Y+R D ++ Sbjct: 872 DRSKAVMQVFMYAWMYNRSVQLSTAIQP--GIYYMRTLFSSSFDPGIYHRTDRFKTEQVL 929 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +L + + + E PF+ + K+ + + + Sbjct: 930 DFANYRTDFEDSLRNCLDEIFDTETPFV--QTPNGKACMYCPFKDIC 974 >gi|297626181|ref|YP_003687944.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921946|emb|CBL56506.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1123 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 126/1077 (11%), Positives = 296/1077 (27%), Gaps = 157/1077 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD--VVE 86 LVE + + + ++ A Q LR+ + S + P+I ++ + Sbjct: 36 ALVEAVAQRVEAGAHMDRLVVLTWSRPAAQRLRARIVARLAS-SQLAPVITTVPGWCLAL 94 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 ++ L L ++ ++ +++ L++ L + + Sbjct: 95 QRRFGHLDADGQLPHVLTGPEQQMQVRELVVQLGRDL-----------WPESVRAAIATM 143 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 ++ L + + +DL L W+ F + + A Sbjct: 144 AFSQELRTGMARARQQGLDPDDLVRLGRRTGREEWVSMGLFFENYLDVLDAQPAWDYAEL 203 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 ++ L+ A ++ + + L+ V G V D Sbjct: 204 VHRTRLLLLEAPVSSVLTEEIEGVFCDEFAELDRSQIALLEQVHQV--GIPVAATADPQS 261 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + ++ + P L L + + Sbjct: 262 SVFAFRGADPRAVADFGRRFEVTGLPGPERIDLSTSLRGTAGLQR-------------GI 308 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--- 383 S P T E + + + E +A LR + Sbjct: 309 ASLIARNPVAGGGSGTRPHEAGAVSGADRAEQIVCRSYETAAAEIAGVAEDLRTARLAGV 368 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK---- 439 +++ + A R + L GI +++ AG ++ + + ++T + Sbjct: 369 MWSQQAVICRAGRGQLGTIARGLANQGIPVEV-AGSDIALSEQACVVTLMDALAVALGFS 427 Query: 440 ---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 D + L+ PL + R S + ++ ++ R Sbjct: 428 RRVPPDPDQLDRLLLSPLTSL---DPTALRRVGGALWHEAASGTTSDPMTLVRQFLMRRA 484 Query: 497 ATQKNNTHVPHWQSR-----------------------------------LSEEDKELAV 521 + VP ++ ++ D E Sbjct: 485 GDHLPSPVVPPATAQDVGALVHRPDTSGAAPTDVTTPPTGPTAQTATSALPTDPDLEPVR 544 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + ++ + + +DW + + +L Sbjct: 545 ELAALLGDAAARIMRGEGAYDVLWRLWDGTDWPSRLRGEALSGSASSGQANSDLDAVLAL 604 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 +++ ++ ++ + I G+ + + + +L ++ L + Sbjct: 605 FDVAARHMELTGQKGAETL----IAEVSGQEIPGDQARESDPRGRGVQVLTAHRAKGLEW 660 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSD-----LNLKTAEKYIGQAAHDFEMANGTRH 696 D +I+ G EG WP N LS + A + A + + Sbjct: 661 DRVIIMGAAEGSWPGNRRGAGLLSAELLDADDPGLAPAPGAWMQQERRAFVLAASRARKE 720 Query: 697 LIYTRSLRENNIPTIASRWLQRL-------------------------LVLGGTDFFDNL 731 L+ T +L + ASR+++ L V L Sbjct: 721 LVITANLGSGDEQAQASRFVRELGGQVLAVPHDTRRPRSLQGLVGELRRVTADQRSTAGL 780 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL------------------------EAQP 767 ++ L + ++ P + Sbjct: 781 REAAAHQLGQLAVVRDDQQRALVPGADPRSWWGLGGLSGRHGTPSPAGVGEPEGPTRDKA 840 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 S + +++LI P + + F G++ H + + ++++ Sbjct: 841 IRLSVTGLQKLIACPRQWFLDVAARGATTGGF-----AAGVGSVIHLLAEHAVTDHLSED 895 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + +D + ++ I R H++ F + + + + V + Sbjct: 896 ------QLHDALDEAWNDLDVHQQGWRTLIERSRAHEMITRFERWQGGQPTEVLGVEVPV 949 Query: 886 PAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 I + L G DR++ + SG + I D+KTG P + A + QL+ A Sbjct: 950 RHTFVIGGQPLELVGSIDRLERDRTSGRIRIIDFKTGSRAPSRTEAAS--NLQLAAYQLA 1007 Query: 944 LKAGSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 + G+ ++ A L ++RL + + + D+ + + L Sbjct: 1008 VMRGACRELTGSTPAMDGALLVFLRLPAGARDPLLLKVVGQPGLDDHPYPAAEQLAN 1064 >gi|282853718|ref|ZP_06263055.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|282583171|gb|EFB88551.1| UvrD/REP helicase [Propionibacterium acnes J139] Length = 1085 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 73 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 129 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 130 ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 174 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 175 GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 234 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 235 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 287 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 288 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 332 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + + VA + A + IA LR + + + A++T Sbjct: 333 RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 392 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 393 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 452 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + + Sbjct: 453 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 512 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 513 LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 572 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 573 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 632 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682 + ++ + FD + + GL EG WP + S L A E Sbjct: 633 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 692 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + ++ RH + S+ S L L+ Sbjct: 693 ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 752 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P S Sbjct: 753 RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 812 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R F+ G+L H I + + P+ Sbjct: 813 ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 864 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 865 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 921 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 922 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 980 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992 I V+ + L+ K + + + + +++ Sbjct: 981 IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 1024 >gi|46580468|ref|YP_011276.1| hypothetical protein DVU2063 [Desulfovibrio vulgaris str. Hildenborough] gi|46449887|gb|AAS96536.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234210|gb|ADP87064.1| hypothetical protein Deval_1915 [Desulfovibrio vulgaris RCH1] Length = 984 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 119/933 (12%), Positives = 236/933 (25%), Gaps = 126/933 (13%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69 + F + L R P + P R + L G Sbjct: 18 VPWDCDFLEAV--------LQLALRLTRNRP---GDAVLVFPHGRPRRHLIDRLRNAPGV 66 Query: 70 KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 K +LP + ++ ++ V + R+ L + D+ Sbjct: 67 PKPCLLPQMYTVQELF---TRIRAEREQRPPQTVGLLDRVGLLLECV-------TDLASP 116 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 P + L+ +++ ++ + +DL + + + + L Sbjct: 117 GTPLCEALTAGGQRHFFPWGARLSALLEDCFSQGLRPDDLTHM-EGQVAPFAASLLENLG 175 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + +T L+E S+P + +IIAG RL + Sbjct: 176 RIHERYTLALMERGWSTPGFDAFRAVDGLEGTPSCLEGRTVIIAGFAALNGTEERLFEHL 235 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 H I L + T H Sbjct: 236 WRHCGADICLHT-----------DAAVARMGQERVHWTCEDH------------------ 266 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + + + V+ E + Sbjct: 267 --------------------------VRWLTSWRAEAELLHAPRAFKPRVSFCEGYDLHS 300 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 + + L+ + E+ +A++ D L V L ++IS G PL + + Sbjct: 301 QLHELGTLLQNT--EDLSSTAVVLPDTGLLMPVLHHLPT--KAVNISMGYPLVRSTLFRL 356 Query: 430 LTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L +L+ + L++HP K E R + + + Sbjct: 357 LETLMRLQETRGSNGLYHWRECIDLIRHPYLKMLEVEGT--RPLPEVFHMVEDRLRGGTR 414 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 DL +++ + +A C T L + Sbjct: 415 FADLATVMEEALAETDVAPGTQDL---------------------CRTLLDLCLSRWERA 453 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++++ L D + P + + + Sbjct: 454 STPAALAEAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAATAFPQDV 513 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 I+ + E V + + L +LG LESRLL F +I+ + P +P L Sbjct: 514 LFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGAPPNDPLL 573 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPT-----IASRWLQR 718 ++ + L A + AH+F + SR+++ Sbjct: 574 PDSLRPQVGLPDARRRERITAHNFHRLLAGAEEVNLLWQAGVERSGLLDDKKARSRFVEE 633 Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 +L + R + T + R S S + Sbjct: 634 MLWHEERAAGRLFRPGEGPLGTVTCTVRPFESTPRHILKTDAVRDALARFFERPVSPSRL 693 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEIN 832 + P+ Y + +L + D GTL H + Sbjct: 694 DAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAAVGTLLHEALNRFYAPWRGIEVTRDRLDP 753 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK--M 889 ++++ + L + L Q + + + Sbjct: 754 EMLERHFRQSLHESGLADRFPADALAMLETAGPERLRRFLARQPDRTVVLHLEEAFTADV 813 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 ++ L G DR+D G + DYKTG Sbjct: 814 EVDGRTRRLGGRLDRVDRRGEG-AVVLDYKTGS 845 >gi|302879643|ref|YP_003848207.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2] gi|302582432|gb|ADL56443.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2] Length = 902 Score = 229 bits (583), Expect = 2e-57, Method: Composition-based stats. Identities = 159/1026 (15%), Positives = 310/1026 (30%), Gaps = 177/1026 (17%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 + +P A L G + +LP + +L D + + VS Sbjct: 2 VLLPNYHAAGPLAQALSAAAGLPALLLPQMTTLADWAQS-----------IPLAVSVQSD 50 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 L L R++ A+ L++ L ++D + + Sbjct: 51 TQRLLTLYQALRDRNW---------------FPDADLWSLSRELLTLMDELTRHHVSLPE 95 Query: 169 LHALKNEKYGMWWLL----AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 + + + A F + + + A+ + Sbjct: 96 STEAFSRQLVAAYQAQSGVAMQFEARVVHELWYAMAAHDELDVTAAYQQRLAILAQQVTM 155 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 VL D P + Sbjct: 156 P------------------------------LFVLQTCDLDAPEMRF------------- 172 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 LA + + + D++ L + S + + D + + Sbjct: 173 -----------LAACRERVRVTVFDLRELLGMDAGCALLSAALQQELHGEDLRSAAQSRV 221 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 + + + L A +EA + + +R L E K A++ DR +ARR++ Sbjct: 222 AGVALTD------RIGLFGAHGMEQEAQAADVQVRRWLLEGKTAIAVVVQDRMVARRLRA 275 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L R + + G +T S++L L A+ + + L+K P Sbjct: 276 LLERARVMVQDETGWTFATLSVSTVLMRWLEAVQGDFYYQDVLDLLKSPFLF-------- 327 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 ++ + A Q H E A Sbjct: 328 ----------------------AENQVLRKQAAYQFEQLVRRHGVVLHLNEHIAAAEREA 365 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 ++ + L + + S+S W L + H + ++ + L Sbjct: 366 PELVPALVRLRQAARLLTAR--HASLSGWLSALHQSLDLLG-VIHGWRQDAAGQQLMQLL 422 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + ++ + EW +++ +D T + S + +R FD + Sbjct: 423 ALWQEEL--QADTTSCSFSEWRRWLSQQLDLNTYRDLSVDSP-VLFTHLAATRWRCFDAV 479 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL 703 +L G + G P + + +++ L L + Q D ++ T Sbjct: 480 LLLGCDAGHLPAPVNAGLWFNDAVRTTLGLPLSCVQQDQVRDDLLSLLAMNGTVLATWQA 539 Query: 704 RENNIPTIASRW---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------- 750 N P + S + L+ + +L N++ G L R D K Sbjct: 540 NCNGEPNLLSPYFEMLRAMHLLAFGHDLMNVELGGLLPLAQVRIQDSDRKGLPRTTKVLH 599 Query: 751 ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Q K P+P P E P+ S S L+ PY +AR +L L+ + + Sbjct: 600 TKFLREGCRIQDPAKMPRPVVPPELIPQKISPSGYNSLVACPYQYFARHVLHLNELDDVR 659 Query: 801 KDPDRTDRGTLFHNIITELIKKRI---NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 +D D+ D GT H ++ + +++ E ++++I D F ++ W Sbjct: 660 EDLDKRDYGTWVHEVLQRFHAEIPQLGSRDKGEAERVLRRISDEVFANALAHDYLAQAWL 719 Query: 858 HLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG--FVD 914 + + ++L + +I++ +P ++A+ + L G DR+D+ Sbjct: 720 LRWQGLIPAYLHWQLEIEADGWRYHAAEVPFEVAVSG-NLLLRGRLDRVDVSVENADAFA 778 Query: 915 ITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYKT + K D QL+ A + ++ L Sbjct: 779 VIDYKTQSIQGLKNKLKSPGEDVQLACYA-----------HVQAAKTAAFVSLDDD---- 823 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + DEL++ +L L EI ++ G +H EK E L R+ E Sbjct: 824 TVQAVSPDEEIDELAQLTLARLGEIFAQIREG-AGMPAHGT--EKICAYCEMKGLCRLGE 880 Query: 1033 WREEYD 1038 W E D Sbjct: 881 WEESQD 886 >gi|315090099|gb|EFT62075.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4] Length = 1061 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 49 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 105 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 106 ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 151 GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 210 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 211 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 264 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 308 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + + VA + A + IA LR + + + A++T Sbjct: 309 RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 368 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 369 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 428 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + + Sbjct: 429 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 488 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 489 LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 548 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 549 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 608 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682 + ++ + FD + + GL EG WP + S L A E Sbjct: 609 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 668 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + ++ RH + S+ S L L+ Sbjct: 669 ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 728 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P S Sbjct: 729 RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 788 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R F+ G+L H I + + P+ Sbjct: 789 ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 840 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 841 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 897 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 898 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 956 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992 I V+ + L+ K + + + + +++ Sbjct: 957 IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 1000 >gi|88607521|ref|YP_505426.1| hypothetical protein APH_0849 [Anaplasma phagocytophilum HZ] gi|88598584|gb|ABD44054.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ] Length = 936 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 151/1041 (14%), Positives = 310/1041 (29%), Gaps = 177/1041 (17%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T+ VP + + L+ F + G + I + + ++V+ + D+ Sbjct: 8 TVVVPNRSDAECLQFYFSKQCGIEDNI--EVLAFSEIVKSAYEDDIEARAGA-------- 57 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 LL + I W LAK L ++D I + Sbjct: 58 -LLLCMQFIEEWNALRHTDYPA-----------------SLAKELLLMLDEIYLNCTDLD 99 Query: 168 DL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 L +L+ E + L ++FL +++W IA + + + Sbjct: 100 RLSTSLEEEDLFGYRCLTSEFLIDFARWWKST------GHSNASAIAQVERF-FSELCLS 152 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +AG + + L S + I+LP LD +P W T+ Sbjct: 153 GKKVAVAGIASNRAFSELLRSIFESISESFIILPDLDLEMPENKWKTLE----------- 201 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H QY KLLD L I RE+V L + D + Sbjct: 202 --MGHYQYRFMKLLDELGIGREEVSILDQRDKNHLVDLAFNFEIPSLSDERYCHIKEQ-- 257 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR---------- 396 ++ L+ +E EEA + + + + Sbjct: 258 ----------QNIELVICGSENEEARKVIEIAQRYCCASGNDRDVFCGTEKNANNAVSTN 307 Query: 397 ------------------NLARRVKLELTRFGINIDISAGIP--------LSTTLHSS-- 428 + + S + L T Sbjct: 308 NTASSSALNNNIALSQYASEIAGYTRSIQGACTVFLGSDSLSSRIYSTLSLRDTEEVRCD 367 Query: 429 -------ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ ++ + D + +++KH + G+ +K A Sbjct: 368 DEHVISTLMLCVIEVVVSEGDAAHLLSMIKHGMVTIGYEDKEAYGAA------------- 414 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + ++ ++ + A S E +E +V+ I + Sbjct: 415 ---VCQFETEIIRKHAVSGFEAITHAVYEVGSAESREYWRRVVEAIGPFME--------- 462 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-A 600 G S+ + + + ++N+ + + + + + F + K Sbjct: 463 --LDGKHSLGEIIQAHLKSIRNLVGGNSAYVKRDNCDGIFENIEAFFRNLTAYCKGKKIF 520 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + I L++ K ++ + + +I+ G NEG + + Sbjct: 521 TVRNYKHICKDLLE---CYFKDARNDIFSVGSV------RSEVVIISGFNEGGF-APVRR 570 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 + L+ ++ L + T E Y G + L TRS+ T A ++ L Sbjct: 571 SSLLNNTIRKKLKIPTDEGYKGIFLSILYNLFHAKRLYITRSVESCGKVTEAPLLIRYLD 630 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-- 778 L + + +D + + +P P LE + + +S + L Sbjct: 631 FLLSSFSNASKSSSDSTVSSVDLNIDKSAYLSKFLC-EPNPKLEVRSQVFSVLTAEALGM 689 Query: 779 -INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 I++PYA Y+R +L + + + +I ++ N + Sbjct: 690 LISNPYAFYSRYVLGIYPVKSVNTGNMAKNFAVTVRSI---FLQYLKNMGLGSDYSALID 746 Query: 838 IIDSHFEKE-NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 I F P+I+ +W F ++ +F + + + + ++ I V + S GI Sbjct: 747 IAKREFATVCKSYPYIEKLWWPRFEAMAENFFQADRERKCNVSAIEVESDFTWDV-SEGI 805 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + D + L+ G + YK G P + Q G I + Sbjct: 806 KVISKCDSVSYLRDGSPLVVCYKIGMVPSQVDIQCGF----------ASRGIIDSICVSE 855 Query: 957 V-----ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 A+ Y R+ + + ++ + + + L + Q PF Sbjct: 856 SNEKKDASFAYWRITPES-----VEITEIKDLPDVIKAAKEGLQNFLVKFQEEMIPFYPR 910 Query: 1012 LRLSEKSNIQSEYDHLARVAE 1032 S+ EY+ +R+ E Sbjct: 911 EDFSKFV----EYELFSRIRE 927 >gi|291513844|emb|CBK63054.1| RecB family exonuclease [Alistipes shahii WAL 8301] Length = 946 Score = 229 bits (582), Expect = 3e-57, Method: Composition-based stats. Identities = 134/1060 (12%), Positives = 285/1060 (26%), Gaps = 175/1060 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F E+ L L+ I P++RA + P Sbjct: 4 FLHEVAEDLYARYG-----------EGLSERAILFPSRRARLFFVDALT-GIAGRPMWQP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPES 134 ++ D+ E R+ + L I+ P + + Sbjct: 52 RWVTVDDLTTEISGLRTGD------------RVRLITELYKIYSEYHAEPFDKFYFWGDM 99 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L+ + A L I I+ E + L + ++ Sbjct: 100 LLTDFDTIDKYRIDAAMLFRNISEIKEIEAD---ISYLTPAQLQ------------ILRF 144 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W+ E + S +A+ + + + +S + N Sbjct: 145 WSTLADETDLSEEKRRFLAIWKTLGPVYARFRER-----------------LSELGIAYN 187 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G + D +L FL E Sbjct: 188 GMVQRAAADRI------RGEGYAFPEARQYVVAGFNALSECEKQLFRFLSTAAETDFYWD 241 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 S + + + ++ + A + + Sbjct: 242 YDSYYKDRPEQEAGMFVRENVV----QFPPRGDVSHDNMERPKELTAVAAVSNAVQCKHA 297 Query: 375 AIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 A LR K++A++ D NL + L ++++ G PL +L + + Sbjct: 298 AAILRELAARGPLDKRTAVVLTDENLLLPLLYALPPEIGKVNVTMGYPLRASLAYTFVER 357 Query: 433 LLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L+ ++ HP + A++ +R + S D Sbjct: 358 LVELQAHRRTKGAGCTFYHADAVGILAHPYVADSDARE-----TRAMQDEIVRERRISVD 412 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L D + +P ++ Sbjct: 413 AAWLGR---------------------------------NDLLRMIFSPAAAWRE----- 434 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +SDW V + + + + F S ++ I+ Sbjct: 435 -----LSDWLLRVVAAVARTPYEGDDRRQRVEFLAVISEEISKLRNSLDEC-DIELTTEV 488 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP-KNTAKNPF 663 + ++ R + + + E + ++G LE+R L+F+ ++L +N+ +P + A+ F Sbjct: 489 YTSLLRRHLQTVRIPYEGEPLEGVQVMGILETRNLDFENVVLLSMNDDNFPGNHMAQASF 548 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLI-YTRSLRENNIPTIASRWLQRLLV 721 + +++ L T E + G A+ F R + S ++ SR++ +L Sbjct: 549 VPYNLRAAYGLPTPEHHEGVYAYYFYRLVQRARRVWMLYCSHADDKSTGEPSRYIYQLDY 608 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G ++ L T ++ K + T S + + + Sbjct: 609 ESGF-PVRKVEVGVDVNLAETDPIE-VAKDEGIMQRLGRFTDPESKATLSPTAFFRYVAC 666 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMKQII- 839 P Y + +L ++ D GT+ H + +L + + + E M + Sbjct: 667 PLRFYFHSVARLQADDEIAEEVDAPMFGTILHAAVQKLYARIVGEAHPGETLRAMIRTGE 726 Query: 840 ----------DSHFEKENLPPHIDIIWRHLFHKISHSFLEH----EEKIQSSIEKIFVNI 885 +++ + L I +L + + Sbjct: 727 IAAAVEAAINENYLQDPAATTDDYTGNLLLVKDIVTRYLRGGVMPYDAAHDGFTVTGLEQ 786 Query: 886 P----AKMAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID----- 934 + G ADRID L G + + DYKTG + + + Sbjct: 787 EVAYGFDFTAAGRPLCMKFAGIADRIDALDDGTLRVVDYKTGAPHLEFAGMESLFRGEGK 846 Query: 935 ------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE--- 985 Q L A L + L+Y+R + +D++ Sbjct: 847 QRLSNILQTLLYAMMLYRTRGVDAEPA----LYYVRAMNRPDYLPTLDDRETGVRGGRYT 902 Query: 986 -LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 +E+ + + + + L + PF + ++ Sbjct: 903 LYAERFEELVRQTLAELYDPSVPF--RQCEDADTCNFCDF 940 >gi|119715744|ref|YP_922709.1| UvrD/REP helicase [Nocardioides sp. JS614] gi|119536405|gb|ABL81022.1| UvrD/REP helicase [Nocardioides sp. JS614] Length = 1060 Score = 229 bits (582), Expect = 3e-57, Method: Composition-based stats. Identities = 137/1059 (12%), Positives = 297/1059 (28%), Gaps = 116/1059 (10%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ + D V +++A ++LR G+ Sbjct: 27 PGTGKTTTLVEAIVDRIESRGAKPD--------EVLALTFSRKAAEQLRDRVTARLGR-- 76 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 + + F L+ Y+ RLL ++ R L D + + Sbjct: 77 ----TMSTTMSSTFHSFAYALIRRYSPAELYEAPLRLLSAPEQDVVLRELLTDHPESVVW 132 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 L+ + A+ + ++ + L AL + ++ A FL Sbjct: 133 PDSLARALGTR---GFAREVHSVLSRAREKGLDGVALQALGEAEGLPEYVAAGLFL---- 185 Query: 193 KYWTERLVELNASSPVGY-QIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATARLMSTVA 250 + L A+ + A + AE + G + + + P L+ +A Sbjct: 186 DQYLTNLDSQGATDYADLIRRATIEAETHRDELRARIGAVFVDEYQDTDPGQVALLRALA 245 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +V+ D H + + + + + L Sbjct: 246 GDGRDLVVV--GDPHQSIYGFRGAEVRGILEFPTAFPRTDGAPADVVALRTTRRFGPRL- 302 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + V + LP + + L + V + D ER E Sbjct: 303 ---------LIASQRVAGRLALPGSIPEEARSAFLAPEAQPNPLGDGRVLVRTFDTERAE 353 Query: 371 AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTL 425 A +A LR + E + + L+ + R ++ L G+ +++ S +PL Sbjct: 354 AEHLADLLRRAHLEDDVPWDQMAVLVRSGRTSIPPLRRALGAAGVPVEVASDEVPLVRDP 413 Query: 426 HSSILTSLLNAIFK---LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 L L A+ D + + L A + + Sbjct: 414 AVLPLLDALRAVVDLDTRPDEGEVEHVAPENGWSLDPARAEGLLLGPLGGLDAGDLRRLA 473 Query: 483 YDIMDLKSLVLDRIATQKNNTHV--------PHWQSRLSEEDKELAVLLVDHILQCITPL 534 + + A + P + L + A L +L L Sbjct: 474 RRLRTREKEQGKAEARTPRTSRDLVRRVVVEPGFLDGLDGPEVVRARALAQLLLDAREAL 533 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + S + W + R +L +++ + + Sbjct: 534 RVGASAEELLWTLWSRTGWPARLRRSVDLGGGAARRAHRDLDSVCALFDVAARADEQRDH 593 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 ++ + I +T+ + + + + +L ++ L + +++ + + W Sbjct: 594 VGVRAF----LATLVQQQIPADTLAERGARGAAVRLLTAHRAKGLEWRLVVVAHVQQDGW 649 Query: 655 PKNTAKNPFLSRVMQSDLNLKTA----EKYIGQAAHDFEMANGTR-HLIYTRSLRENNIP 709 P ++ L + + E + + + R L+ T ++ Sbjct: 650 PDLRRRSTLLQADRIGEHGVVPPVSTRELLMEERRLFYVACTRARQRLVVTAVASPDDEG 709 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-------- 761 SR+L L V G + R +L T P P Sbjct: 710 EQPSRFLDELGV--GVERVVGRPPRPLSLPGLVAELRRTLADPETSEPLREAAARRLARL 767 Query: 762 -------------------------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 QP S S ++ + P + R Sbjct: 768 APEVRIADPSSWWGTRAATRSVEPIRDPGQPVPVSASVLEAVAVCPTQWFLEREAGGSAR 827 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDII 855 + G L H + + + ++ + +D+ +++ + P Sbjct: 828 -----AHQSANLGELLHALAQRVAAGELEP----AVEVLMEHVDAVWDRLDFRTPWSRAR 878 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGF 912 FL+ + E I P + + ++G+ADR++L G Sbjct: 879 EHDRVRAAIGRFLQWHLA--NPRELIATEAPFTTVVALEGGEQVKISGYADRVELDADGH 936 Query: 913 VDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVANLFYIRLKQK 968 V + D K+G P + + QL L A+ G+ + + A L + L Sbjct: 937 VVVVDLKSGRTKPSNRAVEGHV--QLGLYQYAVDHGALADLAPGAHAGGAELVQLGLTDG 994 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + + + + + L LL+ P Sbjct: 995 GEAAVVQAQDAQPEDGPARDDLRRRLDHAAALLRAETFP 1033 >gi|120602212|ref|YP_966612.1| hypothetical protein Dvul_1165 [Desulfovibrio vulgaris DP4] gi|120562441|gb|ABM28185.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4] Length = 984 Score = 229 bits (582), Expect = 3e-57, Method: Composition-based stats. Identities = 122/933 (13%), Positives = 237/933 (25%), Gaps = 126/933 (13%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69 + S F + L R P + P R + L G Sbjct: 18 VPWDSDFLEAV--------LQLALRLTRNRP---GDAVLVFPHGRPRRHLIDRLRNAPGV 66 Query: 70 KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 K +LP + ++ ++ V + R+ L + D+ Sbjct: 67 PKPCLLPQMYTVQELF---TRIRAEREQRPPQTVGLLDRVGLLLECV-------TDLASP 116 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 P + L+ +++ ++ + +DL + + + + L Sbjct: 117 GTPLCEALTAGGQRHFFPWGARLSALLEDCFSQGLRPDDLTHM-EGQVAPFAASLLENLG 175 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + +T L+E S+P + +IIAG RL + Sbjct: 176 RIHERYTLALMERGWSTPGFDAFRAVDGLEGTPSCLEGRTVIIAGFAALNGTEERLFEHL 235 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 H I L + T H Sbjct: 236 WRHCGADICLHT-----------DAAVARMGQERVHWTCEDH------------------ 266 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + + + V+ E + Sbjct: 267 --------------------------VRWLTSWRAEAELLHAPRAFKPRVSFCEGYDLHS 300 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 + + L+ + E+ +A++ D L V L ++IS G PL + + Sbjct: 301 QLHELGTLLQNT--EDLSSTAVVLPDTGLLMPVLHHLPT--KAVNISMGYPLVRSTLFRL 356 Query: 430 LTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L +L+ + L++HP K E R + V + Sbjct: 357 LETLMRLQETRGSNGQYHWRECIDLIRHPYLKMLEVEGT--RPLPEVFHVVEDRLRGGTR 414 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 DL +++ + +A C T L + Sbjct: 415 FADLATVMEEALAETDVAPGTQDL---------------------CRTLLDLCLSRWERA 453 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +++D L D + P + + + Sbjct: 454 STPAALADAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAATAFPQDV 513 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 I+ + E V + + L +LG LESRLL F +I+ + P +P L Sbjct: 514 LFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGAPPNDPLL 573 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPT-----IASRWLQR 718 ++ + L A + AH+F + SR+++ Sbjct: 574 PDSLRPQVGLPDARRRERITAHNFHRLLAGAEEVNLLWQAGVERSGLLDDKKARSRFVEE 633 Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 +L + R + T + R S S + Sbjct: 634 MLWHEERAAGRLFRPGEGPLGTVTCTVRPFESTPRHILKTDAVRDALARFFERPVSPSRL 693 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEIN 832 + P+ Y + +L + D GTL H + Sbjct: 694 DAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAAVGTLLHEALNRFYAPWRGIEVTRDRLDP 753 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK--M 889 ++++ + L + L Q + + + Sbjct: 754 EMLERHFRQSLHESGLADRFPADALAMLETAGPERLRRFLARQPDRTVVLHLEEAFTADV 813 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 ++ L G DR+D G + DYKTG Sbjct: 814 EVDGRTRRLGGRLDRVDRRGEG-AVVLDYKTGS 845 >gi|289425545|ref|ZP_06427322.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|289154523|gb|EFD03211.1| UvrD/REP helicase [Propionibacterium acnes SK187] Length = 1058 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 123/998 (12%), Positives = 256/998 (25%), Gaps = 117/998 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ + Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNS 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--- 510 LA + L ++ ++ + + ++ S Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 511 -----------RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S + G DR++ G + D KTG + + ++ Q+ + A + Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVV 946 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +G I V+ + L+ I S Sbjct: 947 ASGGVEAIGPASVSGAELVHLRIGAGIGQANPKVDYQS 984 >gi|307328514|ref|ZP_07607688.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] gi|306885782|gb|EFN16794.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] Length = 1118 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 122/1060 (11%), Positives = 268/1060 (25%), Gaps = 120/1060 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A V + +P + + +++A ELR G S Sbjct: 81 PGTGKTTTLVEA------VARRVREGADPE---RLLVLTFSRKAAVELRDRMAARLGGAS 131 Query: 73 TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P + A D+ L + +S ++ + + L+ + + Sbjct: 132 A--PRATTFHSYCYALVRAHQDVDLFVDPLRLLSGPEQDVVVRELLAGQAELAREGRAFV 189 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + A + ++ L W AA FL Sbjct: 190 R---WPDDLRACLTTRGFADEVRAVLARSRELGLGPRALGEFAERTGRPDWSAAAGFLAE 246 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V A + R E + G + + + A RL+ +A Sbjct: 247 YLDVLDAQGVLDYAELVHRAVLLAGRPEVAAELAGRYDAVFVDEYQDTDVAQGRLLGALA 306 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G +L D + + + + D+ Sbjct: 307 G--GGRTLLAFGDPDQSIYAFRGADVGGILRFREDFPRADG--------------RPADM 350 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + L + + + + ++ + V E Sbjct: 351 EVLTVSRRSGAVLLAATRRITGRMPLTRLPARAVRAHRELAAVRDGGRVEAYTYPTAGAE 410 Query: 371 AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 ++A LR + E ++ + L+ A V+ LT G+ +++ PL Sbjct: 411 LDNVADILRRAHLEDGVPWREMAVLVRAGGRSIPGVRRALTSAGVPVEVDGDDIPLRHEP 470 Query: 426 HSSILTSLLNAIFKLNDF-----------MAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + L + L A TL+ PL + E Sbjct: 471 AVAPLLTALRAAATAALPDSGGLSAVLGVETALTLLTSPLGGMDAADLRRLGRALREEER 530 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + + L + + ++ A L + L Sbjct: 531 SAGRAVPRPSDVLLAEALAEPERLAVHDPAY-----------ARGAQRLGPLLRTAREAL 579 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 T + + + W Q +L ++ E Sbjct: 580 ARGGTAEQALWQLWDGTSWPGRLERAAQRGGTAGRNADRDLDAVCALFETAA----RAEE 635 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + +I + I +T+ ++ + + ++ ++ L + +++ G+ EG+W Sbjct: 636 RTGGRGALNFLEEIDAQDIAADTLSRRMVRPDAVRLMTAHRAKGLEWALVVVAGVQEGLW 695 Query: 655 PKNTAKNPFLSRVMQSDLN----LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 P + L L + + A + L+ T + Sbjct: 696 PDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAKERLVVTAVKAASEDG 755 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------------- 755 SR+L L V +R +L TT P Sbjct: 756 DQPSRFLTELGV--PPTDVTQRPRRPLSVAALVAELRATTVDPDASEALRDAAARRLARL 813 Query: 756 --------RPKPFPPLEAQPRTYS-FSEIKQLINDPYAVYARRILKL------------- 793 RP + + + + D A L Sbjct: 814 AALRDEEGRPLVPAAHPHRWWGLHEPTHSEVPLRDRDRPVALSGSALDQLVNTCSLQWFL 873 Query: 794 -DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + G + H ++ + + + + + Sbjct: 874 GREVKADAPSTAAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWDALAFDAPWKSR 932 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKS 910 + FL + + + +E+ + + G DR++ Sbjct: 933 QEKEQAR--AALERFLHWHVMERGGRTPVATEHSFDVTLEADVYKVRIRGSMDRVETDGE 990 Query: 911 GFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI---DCRKVANLFYIRLK 966 G + D+KTG + + PQL+ A++ G+ + + ++L+ Sbjct: 991 GHAYVVDFKTGKQAVTRGDVEHH--PQLAAYQLAVREGAVDDLFEGGRPEAGGAELVQLR 1048 Query: 967 QKFKIDCITNDKKKYSADELSEKSL--KNLIEIVTLLQNG 1004 Q +D K A E + + L + + Sbjct: 1049 QGAAKKDGGDDVPKVQAQEPPDGEWVGQLLATAAGRVLDE 1088 >gi|238650911|ref|YP_002916767.1| hypothetical protein RPR_05775 [Rickettsia peacockii str. Rustic] gi|238625009|gb|ACR47715.1| hypothetical protein RPR_05775 [Rickettsia peacockii str. Rustic] Length = 838 Score = 228 bits (580), Expect = 5e-57, Method: Composition-based stats. Identities = 131/709 (18%), Positives = 259/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKPLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L + + +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNADIREYCRNLIDILF- 349 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 350 --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E + F + + ++ + + + Sbjct: 448 FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSPY--FPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F++ + + + Y+++ + + + Sbjct: 738 MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838 Score = 68.8 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 44/223 (19%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 + F + +++ + V I +P + EL+ + K Sbjct: 3 ANYSFLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK- 49 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 LPII ++ +K +D +S I+ LL L+ +I ++ Sbjct: 50 --LPIIIPFNSLISKKTDSDY---------ISKIEELLILSSIITEYKE----------- 87 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 LP++ ++ A+ L + + + + ++ +W FL+ Sbjct: 88 -----LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCF 139 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 W E + + Y++ L++ E + G +I+AG Sbjct: 140 LRWQEEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822868|gb|ABG98152.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 1098 Score = 228 bits (580), Expect = 5e-57, Method: Composition-based stats. Identities = 141/1044 (13%), Positives = 277/1044 (26%), Gaps = 127/1044 (12%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82 LV+ SV + +KRA +R E G ++T P+++++ Sbjct: 64 LVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVH 123 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 N P RL+ A + R L I D P Sbjct: 124 SYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLREMLHGDIADGGEMWPER-LRPA 176 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L D++ EDL L W+ A F Sbjct: 177 LALGGFAVELRDLMLRSSERGLGPEDLIRLGQRHSRPEWVAAGMFAARYEH--------- 227 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + EA + G+ + AT + +++ Sbjct: 228 -----GMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRTERARVRHLLVDDA 282 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 P A + T+ Y D V + Sbjct: 283 QHLDPQAAELVRLLGTGTRTTVVAGDPDQSIYGFRGADPTFLADLADKGDPRQVLLPVNF 342 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 RS + TS + + P + V ++ +EA +A LR + Sbjct: 343 RSSAEVATTAARITSRLPGHLPHRSWSPAQDGGRTSVRVLS--TVAKEAALVADTLRRAH 400 Query: 383 DENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI 437 + + + ++ + ++ L G+ + +A PL+ S L +L A+ Sbjct: 401 LLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRAL 460 Query: 438 -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L+ P+ + L D S L R+ Sbjct: 461 SGQEFTGEDALALLAGPVGG--------AEPVALRRLRRGLRRAELASGGDRDSAELLRL 512 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 ++L++ + ++ + + PL + ++ + + Sbjct: 513 VLVGETDSTRRVTAKLTDVEAASLNRVLSVLRKAKVPLDRGRGIEDVLWAAWQATGLERR 572 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + +L ++ + + +A ++D +T Sbjct: 573 WSAVSARGGPIGAQADRDLDAVVALFDAAASYVDRLP-----RAQLAGFVDYLTGQAIPT 627 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672 T + +L + +D + + G+ EG+WP A+ L DL Sbjct: 628 TRNVSAVPVDAVSVLSAHSAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTAGV 687 Query: 673 --NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLL 720 +TA ++ + A + R + ++ + + SR++ LL Sbjct: 688 SDGSETAADWMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASGDADLVHSRFVDELL 747 Query: 721 VLGGTDFF-------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768 ++ R +L P P A + Sbjct: 748 SGDQDSDVVEAVVQAEDPATRVLALPALVAELRSVVCDPDVAESDPARQERAARQLARLA 807 Query: 769 --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796 + S S I L P R Sbjct: 808 DAGVRGAHPDQWYGTAEPSTGVALWNEEDGPVSLSPSTIDLLNTCPLRWLLERHGGT--- 864 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D GTL H L++ + P+ + + + + Sbjct: 865 ---DGDNTHAIAGTLVH----TLVQALAGRIPPDQVARALENAWDSIDLGSQWYSRRELD 917 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSG 911 R + +F +S + ++ V + +E I L G DR++ G Sbjct: 918 RTR--DMLATFTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEG 975 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 I D KT +P + + QL+ A G+ K + + + + Sbjct: 976 RPVIVDVKTARSPVTKDDAQQHA-QLAAYQVAAAVGAIDGEPASKPGGARLVFVAKPHRK 1034 Query: 972 DCITNDKKKYSADELSEKSLKNLI 995 + T + +DE E L + Sbjct: 1035 EGATQRVQAPLSDEDLETWLAVIH 1058 >gi|314983239|gb|EFT27331.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3] Length = 1058 Score = 228 bits (580), Expect = 5e-57, Method: Composition-based stats. Identities = 119/1004 (11%), Positives = 260/1004 (25%), Gaps = 106/1004 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDISDWPEELRTCAGTAQFASDVRVMAARLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRHANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLND-----FMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNP 425 Query: 454 LAKFGFPEKYLSRAKNAL-------ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LA + L + + KS D + + Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAE 485 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L + + S + ++ Sbjct: 486 LDTACEVYSVPPSLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRR 545 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + +G ++ +T + I + I + + E Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRD 605 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA----EKYIG 682 + ++ + FD + + GL EG WP + S L A E Sbjct: 606 GVSVVTAHRIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWSENLRA 665 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQRLLVLGG 724 + ++ RH + S+ S L L+ Sbjct: 666 ETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELVGELR 725 Query: 725 TDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 D + G R + +++ P S Sbjct: 726 RVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGEIELS 785 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + +L+ P + R F+ G+L H I + + P+ Sbjct: 786 ASHVGELLTCPRRWFMTRRAGASSGSAFRASI-----GSLVHRIC---AENMDQWSLPKA 837 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ E F + + V + + + Sbjct: 838 LAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVRVDGTITV 894 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 S + G DR++ G + D KTG + + ++ Q+ + A + +G Sbjct: 895 PSGTARVRGSIDRLERDAEGAYYVVDLKTGTSQS-DEIKQSHRLQIGVYQAVVASGGVEA 953 Query: 952 IDCRKVANLFYIRLK---QKFKIDCITNDKKKYSADELSEKSLK 992 I V+ + L+ K + + + + +++ Sbjct: 954 IGPTSVSGAELVHLRIGAGKGQANPKVDYQNGLVDVPWPDEAEA 997 >gi|296132524|ref|YP_003639771.1| ATP-dependent nuclease subunit B [Thermincola sp. JR] gi|296031102|gb|ADG81870.1| ATP-dependent nuclease subunit B [Thermincola potens JR] Length = 1154 Score = 227 bits (579), Expect = 6e-57, Method: Composition-based stats. Identities = 120/1029 (11%), Positives = 268/1029 (26%), Gaps = 146/1029 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 G I + S + + P+ + + + L RL+ R + Sbjct: 50 ALAHNYGLGGIIRAQVLSFRRLAWRVLQETGGAAR---VPIGELGKRMVLRRLLDHHRGE 106 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN--EKYGMW 180 L + A+ A LA I ++ DL ++ Sbjct: 107 LRVFARS-------------ADRPGFADALARSIGEMKIYRVGPGDLALAAEKTDETPGL 153 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 L + + + L + + L+ + + + + G TG P Sbjct: 154 LNAKLQDLALIYREFDAFLA--GCYTDPDDYLTLLAEKLDGSSTLEGAEVWVDGFTGFTP 211 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ++ + V L+ + T+ T ++ Sbjct: 212 QEHYVIEKILGKAERVHVTLCLEP-------KDTGRELQEQDLFYPTWET-----FREIT 259 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D ++ + + R + Sbjct: 260 DRAQKTGVKIEPPVLLDAAIPFRFQNSDSL--------AHLERCYFRHPTETAGAGEGIE 311 Query: 361 LIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 L A N R E ++A + R + L+ + + I + Sbjct: 312 LAAAVNRRAEVEAVARKIVYLCREQNYRWRDIGILLRDLGPYRDLIADVFQDYDIPFFMD 371 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + ++ S + + K + + +K L + L + Sbjct: 372 CKRNMLHHPLVELIRSAVETVIKDWSYEPLFRCLKTDLLPVSREDTDLLENYVLAHGIRG 431 Query: 477 RGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 S L+ L A +R + L +++ Q + Sbjct: 432 YARWASGPWHYLRQFTLGEDAEPAPEEKAELAAVNRGRLQVVSSLGLFTENLRQA-GNIA 490 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + +L + + ++ E + + ++SLF +++E Sbjct: 491 EITAAVYTLLEDLHVPEILHKWAQEAESAGRLEQAR----EHLQVWGGITSLFDEMVEAI 546 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + +++ ++ ++ + + + +R N L + G NEG P Sbjct: 547 GEESVSLEDYLAVLEAGLESLRLGLIPPGLDQVVVGTMDRTRSANTRALFILGANEGALP 606 Query: 656 KNTAKNPFLSRVMQSDLNLKT-------AEKYIGQAAHDFEMANGTRH-LIYTRSLREN- 706 A + + + L K + + L + L + Sbjct: 607 ARQADDGIFNDSERERLAEAGVVLAAGGRRKAFDEQYLIYMALTRASEKLWLSFPLADEE 666 Query: 707 NIPTIASRWLQRLLVL-------------------GGTDFFDNLKKRGQCYLDWTRKLDY 747 S ++R+ L GG ++F + ++ R+L Sbjct: 667 GRALTPSPVIRRIKELFPGLNETFYQVDKLPDGTAGGLEYFIHPQRVLADLAVQLRELKA 726 Query: 748 TTKQPHYKR---------------------------------PKPFPPLEAQPRTYSFSE 774 P+ L QP S S Sbjct: 727 GRAIDPVWWDVYNWFNGSADGRGRLAKVLRGVFHTNTEKRISPEVSRALYGQPLKASVSR 786 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRI 824 I++ P+A +A L+L D G FH + + Sbjct: 787 IEKFKACPFAHFAGYGLRLKER--LLFRLAAPDMGEFFHAALKLFNDRLAERGVDWAQLS 844 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLE--HEEKIQSSIEKI 881 ++ ++ + + + + E L + + + E +S + Sbjct: 845 REDCGDLATQVVEELAPQLQSEILLSTARYRYLTGKLKRSVNRAAAVLAEHARRSIFRPV 904 Query: 882 FVNIPA---------KMAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKE 927 V + + + G +HL G DR+D+ ++ + + DYK+ DN Sbjct: 905 GVELSFGAGGELPPVTVELAGGGTLHLVGRIDRLDVARTEEADYLRVIDYKSSDNRLSLA 964 Query: 928 TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + QL AL + + Y +K+ + S D++ Sbjct: 965 EIYYGLRLQLLTYLHVALTHSARLVGRPGLPGAVLYFTVKE-----PVIRSAGPMSPDQV 1019 Query: 987 SEKSLKNLI 995 ++ +K L Sbjct: 1020 EKEIMKKLK 1028 >gi|332291755|ref|YP_004430364.1| hypothetical protein Krodi_1112 [Krokinobacter diaphorus 4H-3-7-5] gi|332169841|gb|AEE19096.1| hypothetical protein Krodi_1112 [Krokinobacter diaphorus 4H-3-7-5] Length = 898 Score = 227 bits (579), Expect = 6e-57, Method: Composition-based stats. Identities = 127/1006 (12%), Positives = 299/1006 (29%), Gaps = 176/1006 (17%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 +P++RA L + ++ P + S+ + + + +L + Sbjct: 23 ILPSRRAGNTLTKKIASR-AITTSFAPKVFSIEEFISHVTGLKSASNIDL---------I 72 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 L +K A+++ + I+ D+ Sbjct: 73 FILFESYKEVVSKE--------------KLADFQTFCGWAQSILSDFNEIDRFLLNQSDV 118 Query: 170 HAL--KNEKYGMWWLLA--------ADF---LKIASKYWTERLVELNASSPVGYQIALMR 216 ++ W + DF L + + ++ A + Sbjct: 119 FNHLKDIKELSDHWSSSKNELVLNYIDFWNSLFDIYTVFCSKSLDKGAVHQGYVYRQAVE 178 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + + PN V G +N + Sbjct: 179 TIEHY---------------------------IHSSPNVRHVFIG---------FNALNT 202 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 +L+ L + + + + + Sbjct: 203 AEQ------------------QLIQALLSEGNAEIYWDTEKSFLNNPFHETNSFVKNYKS 244 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396 + N + ++A + +A ++ L + +A++ + Sbjct: 245 KWSYYSSNPFNWTFDNYSSHKNIATYACSQDILQAKTLGTILSKISSQELSNTAIVLGEE 304 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKH 452 +L V L R ++I+ G+PLS T +S L+ F + ++++ Sbjct: 305 SLLLPVLNALPRTIQKVNITMGLPLSKTPTASFFDQLITLKKNPHKNGYYFKDVLNILRN 364 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 PL+ + LE + N + L L N +++ Sbjct: 365 PLSVSLLGSQ-----TEYLEHEIITNNLIFISVPRLAELS----GDSANTVFNLLFKTWN 415 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + + I L D Sbjct: 416 ENPKDAVINCIR-----IIEALRELF----------------------------DTGNNT 442 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 L + + ++++ IK + +I ++ ET+ + + L I+G Sbjct: 443 LQLEYIYGFYVAFNKLKQLMDAQDHIK-DIPTFIHFYREILSSETIDLRGDPEQGLQIMG 501 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMA 691 LESR+L++ +I+ +NEG+ P ++N ++ ++ NL T EK A H + + Sbjct: 502 VLESRVLDYKHVIITSVNEGILPSGKSQNSYIPYDLKKLYNLPTYSEKDAVYAYHFYHLL 561 Query: 692 NGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + + + + SR+++++ G + ++ K++ Sbjct: 562 HRACTVDLLYTTHSTGLGSSEKSRFIRQIEEEGIHNIKKHVVTPSTI------KIEERLP 615 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + S S + + DP Y R +L ++ ++ GT Sbjct: 616 HIPKDTAIIDSLKNLFKKGISPSALTTYLRDPIVFYERYVLGINSSNEVEETVAANTMGT 675 Query: 811 LFHNIITELIKKRINKNT-----PEINHLMKQIIDSHF----EKENLPPHIDIIWRHLFH 861 + HN + EL K + + E+ +++ + + F ++ + I + Sbjct: 676 IVHNTLEELYKPHVEQQLTVTIIEELLTMIEVEVRNQFKLVYGLNHITEGKNKIVYAIVT 735 Query: 862 KISHSFLEHEEKIQSSIEKI---FVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITD 917 + ++L+ E+ + + + V + + + + I L G D ++ +G V+I D Sbjct: 736 RYVENYLKREKGLLKKGDIVIIKSVEDDLRNIQL-TEDIFLRGKVDLVEQR-NGNVNIVD 793 Query: 918 YKTGDNPKKETAQKLI------------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 YKTG +K+ Q+ + A L V + + L Sbjct: 794 YKTGKVAQKDLNLSAFNDLLLPEGKFEKAFQVLMYAYMLSKKKPLDF-PVSVGIISFKNL 852 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + + +++ ++ + L ++ + N E PF Sbjct: 853 QSGYLPFRYNKNEQVT--EDTLLEFEVVLKSLIAEILNPEIPFAQR 896 >gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] gi|302433309|gb|EFL05125.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] Length = 1057 Score = 227 bits (578), Expect = 7e-57, Method: Composition-based stats. Identities = 132/1064 (12%), Positives = 268/1064 (25%), Gaps = 155/1064 (14%) Query: 36 YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---------TILPIIKSLGDVVE 86 + +P V + ++RA LR++ P+++++ Sbjct: 51 AEGADPES---VLLLTTSRRAADALRADLTRRLTSDPDQESPLPRTVSEPLVRTVHSYAF 107 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 + P RLL A ++ R L +++ P Sbjct: 108 SLLRLEARAEELPPP------RLLAGAEQDVVVRELLEGDLEEGATSWPEQ-LRPALTVP 160 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A+ L D++ EDL L + + W+ A F + + NA Sbjct: 161 GFAEELRDLLMRAAERGLGPEDLTELGHRQDREEWVAAGQFWAQYEEVTQLQGAGGNALG 220 Query: 207 PV-------------GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 E +G + + + P +L+ T+ + Sbjct: 221 LPAAPALDAAELVTSALLALEDDEELRERERGRVRHLFVDDAHHLDPLQVQLIRTIGHTA 280 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + D + KL D + L Sbjct: 281 E--EFVVAGDPDQSVFSFRGADP---------------------KLFADSDNDGDRTVML 317 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 R ++ + + + + K V + EA Sbjct: 318 TTSH-----RLAPTVRAAVAKLGATLPGASPHRKLVTPPGKRGGKVRVRLMPTPAAEASW 372 Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-----IPLSTTLHSS 428 IA LR + + + + R L L R + G +PL+ Sbjct: 373 IADQLRRAHLVDGVPWSEMAVLVRSPARTFLVLQRALRAAGVPIGSATEELPLAKHSAVR 432 Query: 429 ILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 L ++L + D L+ L R +A G ++S Sbjct: 433 PLLAVLRIAAEPELLDVDIAEMLLSSSLGGADPLALRRLRRGLRRLELAGGGQRSS---- 488 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L++ + + + + + + + Sbjct: 489 ---------DELLVEALRGGDILVGLADNEALPVRRVGNLLSITHQAVSRGEGVEQVLWE 539 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 S + + + + +L + ++ + S A Sbjct: 540 LWQASGLQERLLRLVDRGGSLGAQADRDLDAVVALFDSAGRYADRLPKASV----AAFAD 595 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + ++ I G+T+ P + +L S + + + G+ EG WP + L Sbjct: 596 YLSSQNIAGDTLAPAAIPGEGVSLLTAHASAGREWTVVAVAGVQEGAWPDLRLRGSLLGV 655 Query: 667 VMQSDLNLKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 DL E + + A+ R + ++ + SR+L Sbjct: 656 ERLVDLLSGVDEHDKVSAIAPILAEERRLFYLAASRARRTLLVTAVAGEDE--QPSRFLD 713 Query: 718 RLLVLGGTDFFDN----LKKRGQCYLDWTRKLDYTTKQP--------------------- 752 L G D + R + +L Sbjct: 714 DLEENGADDGMLDSRMKPPGRSLVLAELVGELREVVCDDKADPERRKRAAKQLARLAAAG 773 Query: 753 ------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + S S ++ L+ P R D Sbjct: 774 VPGAHPDTWYGLPEASTEDPVHGPGDLMRISPSTVEILVKCPLRWLIERHGGSDPAQ--- 830 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 GTL H L + +T E + R Sbjct: 831 ---LAAVTGTLVHG----LAQAIAGGSTEEQIQAALDEAWVRVDAGAPW--FSRRERSRV 881 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDIT 916 ++ +F+ EK + + + V ++ + + L G DR+++ K G I Sbjct: 882 EQMLRNFVSWLEKSRQELIEAGVEQDIEVELPMGDEEVRVLLRGRVDRVEMDKDGRPVIV 941 Query: 917 DYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 D KTG P A+K PQL+ A+ G+ + + + T Sbjct: 942 DIKTGKVPVSGADAEKH--PQLAAYQLAVLLGAVE--GKNTPGGAKLVYVAKGNNKTGAT 997 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + ++ + L+ + + + +H Sbjct: 998 QRDQPPMDEDNGREWLELVRSAAAAAVGPD--YQAHENADCDRC 1039 >gi|152981969|ref|YP_001352314.1| hypothetical protein mma_0624 [Janthinobacterium sp. Marseille] gi|151282046|gb|ABR90456.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 892 Score = 227 bits (578), Expect = 7e-57, Method: Composition-based stats. Identities = 149/1030 (14%), Positives = 284/1030 (27%), Gaps = 152/1030 (14%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK 70 I PS+ F+ + ALL L+ + R + L+S+ + V T IQ L+S G Sbjct: 8 IPPSAAFWDDAARALLQSDLLADTRQSAV--RDLSSLRVVVSTFAHIQLLKSALGRQLGG 65 Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + I P I SL + + LL + +RL+ L ++ Sbjct: 66 -AFIPPTITSLSEYIR------LLPPQAGTTAAAPSERLMSLY-----------ADLRQH 107 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 L + + LA+ L + D + E + Sbjct: 108 AWLKKLFSARRNTDLLPLAEILLTLSDELTQAML-PELKVSPDVAD-------------- 152 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 W L +L+ + + I+ Sbjct: 153 --ARWQAALEQLSPVARNLLSDETQLVWTIWKSQLDASDAIV------------------ 192 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + + + + + + + Sbjct: 193 --------------HRFAQMMRIAAQAQLPLFWISPVAADALEQAFLDAYQQQRPVVAIT 238 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + ++L A N E Sbjct: 239 LDWHA-------------QYINTTYAAAWPEMLDDVVPADLPLATPPGLSLYAAHNLEAE 285 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A + A + L + K A++ DR +ARR++ L R + + G LSTT ++ L Sbjct: 286 AKAGAQTIMDWLQQGKTNIAIVAQDRVVARRIRALLERAQVIVADETGWKLSTTRAAAAL 345 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 S L + + +A+ +K P K + L Sbjct: 346 ASWLELVAARAETIALLDFLKSPFVFANTDNKADLVMASEL------------------- 386 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + EL + I + ++ Sbjct: 387 ----------------ALRRANVLGGWELVGDALTVIPAAQNMVKLLAQQATGFSKGKTL 430 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW-IDII 609 DW + L + L + G + L I + + + Sbjct: 431 CDWITASQQTLDALG-----MRGALQADGAGAQVLQLLQDIEQDCTAVGHVFSFAEWRAF 485 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L T ++ + + +L +RL +FD ++L G + P + F + V++ Sbjct: 486 LNLQLEATAYVQLNRDRRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPTETLFFANVVR 545 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 +L L T E Q D ++ + +N P S W++RL + Sbjct: 546 RELGLATRESRQRQQLRDVTELLAANEQVLMSWQAHKNGEPNPVSPWIERLELSLARAGL 605 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + P P +P S S L+ PY +A Sbjct: 606 PKI------ARHHVGIAPRHLTPVPLTMPAPHAA-ALRPHKLSASGYNSLVACPYQFFAT 658 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 R+L L + P++ D G H I+ + L+++I D F Sbjct: 659 RMLGLSGLDELSDMPEKRDYGDWLHQILAIFHTRLHEVTLAGRATLLREISDQVFGLALD 718 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIGIHLTGFADRI 905 + + + K ++LE + ++ + + + + I L G DR+ Sbjct: 719 KSAAALGYYARWQKAMPAYLEWLAEREAQGWHFVLGEEKFEKILRWDDGEIILHGRVDRM 778 Query: 906 DLLKSGFVDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 D +G + DYK T + ++ ++ D QL + ++N YI Sbjct: 779 DENATGERAVLDYKSTNQSALRDKLKQGEDHQLPFYGL---------LSDVPLSNALYIP 829 Query: 965 LKQKFKIDCITNDKKKYSADELSE-KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 L+ + + + ++ I E + Sbjct: 830 LEASKDKIKEVESPDYDNWQQSLSVQIASSMRAIAHDAPMPATG-------PESVCQYCD 882 Query: 1024 YDHLARVAEW 1033 L R W Sbjct: 883 VRGLCRKGAW 892 >gi|288921365|ref|ZP_06415645.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288347217|gb|EFC81514.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 1148 Score = 227 bits (577), Expect = 1e-56, Method: Composition-based stats. Identities = 131/1021 (12%), Positives = 259/1021 (25%), Gaps = 129/1021 (12%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE AS+ + ++RA + LR G + P + Sbjct: 35 TLVEAVARRVEAGADPASLLVLTFSRRAARHLRERLAVRLGAGAVG-PAAWTFHAWCLAL 93 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + S RLL R+ L + ++L + Sbjct: 94 LRVYGADTA------SGGPRLLSGPEQDARLRD-LLEGSRELGRPAWPDALAGALGTRGF 146 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ + ++ L + W A+F A Sbjct: 147 AEEVRMLMARAREVGVDPPALARIARRVGRADWKAVAEFYGDYLDALGAEGAIDYADLVH 206 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + ++ + + + PA RL++ VA +V D Sbjct: 207 SAANLTAQQPVLASLRQRYQAVFVDEYQDTDPAQERLLAAVAGGGGDLVVF--GDPDQAI 264 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + + L R S + R Sbjct: 265 YAFRGAQVRGLLDFPARFPSRD----GSPAPVTALRRCRRMAPAPLAASRRVAARLPSAG 320 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387 + + V++ EA ++A LR EN Sbjct: 321 LPVR-------YVRAHRDLVPADSAAGPGQVSVRTYPTAGAEAEAVADLLRREHLENGVG 373 Query: 388 --KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL---N 441 A++ ++ LT G+ + + G P++ + +L + L Sbjct: 374 WADMAVLVRSTAGLGVLRRVLTASGVPVSVGGGELPVAREPAAELLLTALRCADDPSRHL 433 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 L+ PL L L + + L A + Sbjct: 434 TPETARALLTSPLGG--ADPAGLRALGRELRALDAATTVSPAQDDALARDAAADDAPAQE 491 Query: 502 NTHVPHWQSRLS-------------------------------EEDKELAVLLVDHILQC 530 + P + +E L + Sbjct: 492 DVPSPDGGDEHAGAARMPGTPASSSELLRAAVADPQRMLLMVPDELAAPVHRLGQLLRTV 551 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 L +++ S S W +L + L + Sbjct: 552 RAELRRGGAPEDALWTLWSASGWGPRLERASAAGGAAGRSADRDL---DAVVALFDAVER 608 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + E A ++ + I +T + + + +T+ +L S+ L + +++ G+ Sbjct: 609 LGERRGPGFGVASVVSELTHQQIAPDT-ETRAGRPATVRLLTAHRSKGLEWQVVVVCGVQ 667 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNL--------KTAEKYIGQAAHDFEMAN--GTRHLIYT 700 +GVWP ++ L + +T ++ + F +A R L+ T Sbjct: 668 DGVWPDLRQRHSLLGAEQLDAPHRGGGGVRPPRTRDELLADERRLFYVALTRARRRLVVT 727 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR---- 756 ++ SR+L L V + R + L T P Sbjct: 728 AVDGADDDGEQPSRFLDELGVQVEK--VRSRSVRPLTLVGLVAALRRLTVDPDASAAMRS 785 Query: 757 ---------------------PKPFPPLE----------------AQPRTYSFSEIKQLI 779 P P P S S + L Sbjct: 786 AAAVRLAALAAARDGAGRTLVPAAHPNRWWGLVDVTSSSVPVVAPDGPIALSGSSLSGLA 845 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + + + G + H + E+ R ++ + ++ Sbjct: 846 TCGLRWFLEHEAQAAEPASAAQG-----FGKVVHALADEVSSGRTPARMDALDARL-DLV 899 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 E ++ + FL+ + + V + + + L Sbjct: 900 WRQLEFDSRWRSEQERSAAR--EALRRFLDWHAARRREVVASEVRFACDIEVAGRVVRLR 957 Query: 900 GFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 GF DR++L G V + D+KTG P + Q QL A++ G+ ++ A Sbjct: 958 GFIDRVELDDDGRVHVVDFKTGRAAPSRRDLQTHA--QLGSYQLAVREGALDRVLDEAAA 1015 Query: 959 N 959 Sbjct: 1016 G 1016 >gi|332882565|ref|ZP_08450177.1| hypothetical protein HMPREF9074_05984 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679365|gb|EGJ52350.1| hypothetical protein HMPREF9074_05984 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 921 Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats. Identities = 152/1044 (14%), Positives = 300/1044 (28%), Gaps = 180/1044 (17%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 P+ +E+I +L P + + KR L+ F E +TI Sbjct: 2 PYLKEVIADVLENY-----------PDKIERLVFVTTGKRPALFLKKYFAEQVKH-ATIA 49 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P + D+ P+S + L E + D + E Sbjct: 50 PEFIGIADLFTRISGVQ---------PISTLPLLFEFYDCYTKVHQEQHKDTPDNFEE-- 98 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWW----------LLA 184 + + I+ E + + K W Sbjct: 99 ---------FLSWGQTALKDFSEIDQYLVNPEKIFPYIHALKEVEHWSGMDERTEMQEKY 149 Query: 185 ADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 F L +RL EL + E+L T I G Sbjct: 150 LAFWRRLGDYYFALNKRLEELGKGYGGYIAKKAVEKLPEYLQTHTDTIHIFVGFNALSEG 209 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +++ ++ G + D + + Y L K L Sbjct: 210 EQKVIQSIL-IDIGGEIYWDGDTYFLKNQTHEAG------------------YFLRKYLK 250 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + P + + L Sbjct: 251 NWRY--------------------YNTLNHTPKFIGSHYEEEKEFH-------------L 277 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 +A S+A L+ +K+ALI AD NL + + G ++I+ G PL Sbjct: 278 TGVPKNVNQAHSVAALLKELPSAELEKTALIIADENLLIPMLQSVQT-GTAVNITMGYPL 336 Query: 422 STTLHSSILTSLLNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 T + + T+ + + L+ P + + + Sbjct: 337 QQTPLNDLFTTYFRLHLSKSFYYKDVLNLLSQPFLHSLLSAEA---------VTTIATYI 387 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 ++ L + + +DK L+D+ ++ I L + Sbjct: 388 KENNLTYLSR--EKLLENTPKDQQEILNLLFPKGKDKAFITTLIDNAIKLIYQLKSTLDP 445 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 +N+ + + + L + S +++ Sbjct: 446 ENA--------------------------QHVLIQEYAYRFYELFNQLS-LLQKRYGHID 478 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + ++ T+ + E L ++G LESR L+F+ +I+ +NEGV P + Sbjct: 479 SVKTLYHFYLDVLQKSTLNFRGEPLEGLQVMGVLESRSLDFENVIITSVNEGVLPLGKSD 538 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN-IPTIASRWLQR 718 N + ++ +LNL T + +H+F + N+ SR++ + Sbjct: 539 NSLIPYDVKCELNLPTYRERDAVYSHNFYHILQRAKKAYLFYDTEMNSLKSREKSRFILQ 598 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 LL + + T+ K P E + S S + Sbjct: 599 LLTEKVPTHKVTHQIKAPEVYATTQSPLSIEKTPEVM----ARLREMAEKGLSPSALTTY 654 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-------NKNTPEI 831 I +P Y + +L++ ++ + G + H + +L + ++ E+ Sbjct: 655 IRNPLTFYEQYVLQIHEEREVEETVEARTFGEIVHGTLEDLYEIPRSKNKILTEEDIKEM 714 Query: 832 NHLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHSFLEH---EEKIQSSIEKIFVN 884 + +K I+ FEKE + + + ++ K SFL E K I+ + + Sbjct: 715 QNKLKCAIEVRFEKEYKNTDFKSGKNWLIFNVIEKYIRSFLSFELSEIKNNCQIKVLLLE 774 Query: 885 IPAKMAIE------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE----------- 927 + ++ G DR+DL + DYKTG + + Sbjct: 775 EKIT-KVPFCSDKLPFPVYFKGIIDRVDLRDD-EYYVIDYKTGVVERTDVRLKEWENLTQ 832 Query: 928 TAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKID-CITNDKKKYSAD- 984 + QL A L Q VAN + R++ + + ++ S D Sbjct: 833 DIKYGKAFQLLTYAYMLAQQDPKYQEKTMTVANFSFKRMQLGLQPFHTYIDKQENRSIDS 892 Query: 985 ELSEKSLKNLIEIVTLLQNGEQPF 1008 +++ + + PF Sbjct: 893 NTLNLYKDYTEKLLLEIFDEHTPF 916 >gi|312898122|ref|ZP_07757514.1| putative ATP-dependent nuclease subunit B [Megasphaera micronuciformis F0359] gi|310620790|gb|EFQ04358.1| putative ATP-dependent nuclease subunit B [Megasphaera micronuciformis F0359] Length = 1152 Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats. Identities = 127/1020 (12%), Positives = 276/1020 (27%), Gaps = 173/1020 (16%) Query: 46 SVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 V + VP T A + + E + + I + + + L Sbjct: 49 KVLLIVPDQGTYEAERR----YAESLQGRGFMGTRISGFSRLARQVTQGGSGDTVVL--- 101 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L L RL W + + + A + I + Sbjct: 102 -NDFDKRLVLRRLADAWAPSFTVLQQAMGQP-------------GFAATASAFITECRSF 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 E L + + + + E L + + +A Sbjct: 148 GIDAETLKNAGKALETGVLKQKISDISLLYEKYDEYLQTR--FGSTRDLLTALAEDACRD 205 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 I I G P +++ +A ++ ++ Sbjct: 206 EFLQGAYIWIDGFQWFTPQQMQVIQALARCAEETVITLTMNPDALDG------------- 252 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 Q L E + L + ++ R++ S D + Sbjct: 253 ----------QQRETALHRR---AYEAYESLCRLFPAVHVRAVGDSAYSTLRAFRDDFFS 299 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRN-LA 399 + + + ++ + ++ + EE +A + L + ++ +IT + Sbjct: 300 TVPKFQDASV----EGIRAVQCNTRHEEVRYVAGQICHLLRQGRRLKDITVITRTSDPYN 355 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 R K +G+ P++T + +T++ +F + A+ L+K L F Sbjct: 356 RICKQVFAEYGLPCFTDYRRPMTTHPYVEAVTAVREILFSHLNNDALFRLLKTDLLPFSR 415 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 E L + + + + + R D Sbjct: 416 REVDDLEN------------------YSLAAGIRPLRWLKDEDFTYMPERLRNRCGDLSY 457 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWT-----KLTVTCLQNVCLDEHRKLP 573 + I + PL ++ K S + WT + + Q E R+ Sbjct: 458 INDIRRRIFHIMEPLFPFRGEKKSLYEWAGILWQWTYDTQMQSLLASWQEEAEAEGRQEE 517 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E+ K +++L ++++E + + E+ D++ + + + Sbjct: 518 AREHEQVSKKVTALLTRMVELCGNDEISGKEFCDLLEEGLAESEFTLIPPTLDRITVTSI 577 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLKTAEKYIGQAAH 686 + + + G+N+GV+P + ++ L+ + L + K + Sbjct: 578 DRGYTMRSPIVFVCGVNDGVFPVHYGEDGLLNDKERNFLKNCGLPLGPDSRFKTFQERFF 637 Query: 687 DFEMANGTRH-LIYTRSLRENNIPT-IASRWLQRLLVLG---------------GTDFFD 729 + L T SL + + S W+ L+ G D+ Sbjct: 638 FYLALTRADEYLHITWSLADEGGEALMPSPWVGLLVNRGYVKAESDTGTITVKNRADYLV 697 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--------------------- 768 N + R + L Sbjct: 698 NARAALHFLPSALRSAKDGKRIDDIWWALYDWALLNGYDDSVHTIGAGLFYNSRAQDLSK 757 Query: 769 -------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 S + ++ P+A +A+ LKL + D D GTL H + Sbjct: 758 GLIESLFLKNKTLRGSVTLLEAYRKCPFAFFAKYGLKLKERQ--EYDFAAPDLGTLVHAV 815 Query: 816 ITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHIDIIWRHLFHKIS 864 + + ++ + + P +I+ + ++ Sbjct: 816 LRCIGERLLEEGRPWRELKDDEILSLCTVETERAAAEAANNILMSDAYFRQIKNRVVATL 875 Query: 865 HSFLEHEE--KIQSSIEKIFVNIPA---------KMAIESI-GIHLTGFADRIDLLK-SG 911 + S + P + + L G DR+D L+ G Sbjct: 876 VRTVRQLRDFSEGSEFSVRALEQPFGTKGAWKGLSFNLPDGVKVELVGQIDRVDTLELDG 935 Query: 912 F--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 + I DYK+G ++ QL L A + S+ A Y R++ Sbjct: 936 RTFILIVDYKSGKKSITLPEVYSGLELQLFLYMAVARRNLGSK---AVPAGAVYCRVRND 992 >gi|88601851|ref|YP_502029.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum hungatei JF-1] gi|88187313|gb|ABD40310.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum hungatei JF-1] Length = 1140 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 153/1170 (13%), Positives = 304/1170 (25%), Gaps = 266/1170 (22%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILP-IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 + +PT R I+ +R + I+ T LP I + D+ + + P S Sbjct: 36 LILPTHRLIRMVRDQLIK---SGITFLPDHICTPDDLCRYLIDRYGDGTVLIKPETS--- 89 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 L L L+ +++L P ++L ++ +I E + Sbjct: 90 -RLLLVDLLKKHQDELTLFFAQKNPSPRAV------------QDLQILMQVIIRREIDYP 136 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 + + + + L E N + + + Sbjct: 137 ACLGPLQSEKS-------HQISLLISAYQHILSENNLVDQDTLLSWTIDFLKKRDPTDIR 189 Query: 228 ---GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + I G +P RL+ T+ G + L I++ + + + Sbjct: 190 SIIRHVHIFGLFEPMPLEKRLICTLGEV--GETLHYTLPDGKDPDIFSDTGDWLSYGSEE 247 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + Q M Sbjct: 248 VIPSTGMEQ--------------------------------------------QMTTIFC 263 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLAR-R 401 + + F ++ + + E + + + + + A+ T D R Sbjct: 264 HDPSGNDDYLNFPHISGMGFSDPATEMREVIREIVRLHEIGVSYEDIAIATPDFRSTRVY 323 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 T GI + S G L ++ + S+ + I K + + +++ P +F + Sbjct: 324 ALEACTDSGIPVRPSQGSLLQSSPLIAYYLSIFDLIEKGMRYDELVRVIQSPYCRFRWEP 383 Query: 462 KYLSR------------------AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 + + + R +D + + D + + Sbjct: 384 EEDADQKSGDQKKSGKRDSRYKYLSYKNFDLLCRTYGLDGGHIDWEKRLPDVLLFSDDEG 443 Query: 504 HVPHWQSRLSEEDK---------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 L I I ++ +I + Sbjct: 444 DEQPLPDGQGFVQSKKPVSRTYHPRRPLEKQEIADTIEGIIRLVGIIKRLRDKRTIREHI 503 Query: 555 KLTVTCLQNVCLD----EHRKLPNLWFEEE-------GKTLSSLFSKIIETG------SC 597 T L+ + H N W +E TL S + TG Sbjct: 504 WHFKTILKEIGSPVPGLAHANSLNAWLTDEEYLDLSSFHTLLSELQDLSGTGVISYLNPA 563 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + I++I + ++ ++ +S + + G E ++ + L LNEG P+ Sbjct: 564 VPVTFIDFIGAVRHVLQEKS-GNVSPDASGVILTGIREIAHQHYPYVFLVSLNEGHIPRL 622 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRW 715 T + PF + S ++ +T + Q + F A HL + ++ ++S + Sbjct: 623 TTRLPFTNSSENSRMDTRTLSDILRQEKYQFITALAAGTTHLYLSWYEHKDERTVLSSVF 682 Query: 716 LQRLLVLGGTDFFDN---------------------------LKKRGQCYLDWTRKLDYT 748 + L + +R + Y+ L Sbjct: 683 IDYLKSSTLLPEWGRGSDEGGYSGFPGDMEASYSAGVCIHNSEWERSRSYIPEDVLLSSL 742 Query: 749 TKQPHYKR---------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 ++ +R + ++S S ++ P+ Y Sbjct: 743 VQRISIERTYRFRLNRSEYDGIIGDDQIIRSALHFQFSPAYSWSASMLETYAKCPFRFYL 802 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------IKKRINKNTPEINHLMKQII 839 R+L + +P D +G L H I++ + L++ I Sbjct: 803 ERVLHIRPLPDIGSDIPPETKGNLIHVIMSRFKRTMHENRLLPIKEAGFDTALSLIRDIA 862 Query: 840 DSHFEKENLPPHIDIIWRHLFHKI----------SHSFLEHEEKIQS---------SIEK 880 + +K P+ +W +I F+ E S Sbjct: 863 EEECDKV---PYTTPLWIAKKRQIMGGEDIGGGILERFIMTEIDRLSPDEDGRVPHQFTP 919 Query: 881 IFVNIPAKMAIESIG-------------------------------------IHLTGFAD 903 F I G D Sbjct: 920 RFFEYSFGAVRGPDDDPDSRTEPVDLLAIQRELKKSQNPGQNDRDTSESENSIRFIGKID 979 Query: 904 RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 RIDL G I DYKTG P ++ QL L A + I K Y Sbjct: 980 RIDLTPDGLFGIIDYKTGKNIPGSSDLTRMTALQLPLYLLAYQH-----ISSNKPVFGSY 1034 Query: 963 IRLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP-FISH 1011 I+L++K + K S + E L ++ + + F Sbjct: 1035 IQLQRKILHSIPLYDPTLKQTLPKGKLPRSEPQWQEILENALHSSISHVHDIRNGLFPIQ 1094 Query: 1012 LRLSEKSNIQSEYDHLARV--------AEW 1033 ++ Y + R EW Sbjct: 1095 ATTECNADWYCPYKTICRFQPDRGSQLGEW 1124 >gi|327403658|ref|YP_004344496.1| hypothetical protein Fluta_1666 [Fluviicola taffensis DSM 16823] gi|327319166|gb|AEA43658.1| hypothetical protein Fluta_1666 [Fluviicola taffensis DSM 16823] Length = 949 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 152/1069 (14%), Positives = 298/1069 (27%), Gaps = 224/1069 (20%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L +V I VP++R I L+ +I K + P I ++ +++ Sbjct: 17 LDFQNVCIVVPSERMISYLQRAIYQIYQ-KPVLSPKIITIDLWIQDLS------------ 63 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 PV I + L L I+++ S + + + L D I+ Sbjct: 64 PVPIIDKTSLLFELYEIFKD-----------NPVELNVNSFDSFMTWGQILLSDFDEIDR 112 Query: 162 EEKKWEDL-HALKNEKYGMWWL--------------LAADFLKIASKYWTERLVELNASS 206 + L L++ + W D LK ERL + ++ Sbjct: 113 YIVPADQLFKNLRDIREIENWSFNSEELSKGQLQFMAFWDKLKPYYFALEERLKTQSVTT 172 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + I AG + +M ++ A +L D Sbjct: 173 KGKAYRHFSTNIDLAFKEDKDAQFIFAGFNALSKSEIEIMRQLSKL-GRASILMDSDEFY 231 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + L L++K ++ ++ R + Sbjct: 232 FYNSIHEAGQFQ------------------RDLCRKLELKSLPFIENHLLTKQLDIRVVE 273 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + L+ + Sbjct: 274 CPQFTAQA-------------------------------------QVVGSELKKLTSQQL 296 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN----- 441 ++ ++ AD +L + L + +I+ G+PL T S + + Sbjct: 297 NETLVLLADESLLSSILKHLPAEIGHANITVGLPLRQTSLRSWVDLIFRLQESFLRRGNS 356 Query: 442 --DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + HP + E+ + S + L LD Sbjct: 357 SIYYRDFIQFAHHPFI------LGVLSTSEKKEIQNIESRIISNNWHFLDRKKLDLSERL 410 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + D + A+ L+ + + W Sbjct: 411 SVLNQLIFEPWKN---DWKKALQLIQQLNTQLDL-------------------WLDDANE 448 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + + + L I + + + + ET+ Sbjct: 449 LERAIVRRFDQSNIALQN--------------ILARKYPEMSLASFRTLFNGNWSNETIA 494 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 L I+G LE+R L+F + + GLNEG P + N + ++ L T + Sbjct: 495 YFGNPLEGLQIMGLLETRGLDFKRVFVFGLNEGSMPPLNSINTIIPMDLRKYFELPTPRE 554 Query: 680 YIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 G AH F ++ T S + SR++Q++ + N R Q Sbjct: 555 KQGLFAHHFYRLLHSAEEMLITYSSASEAVGSSEPSRYIQQIELEL---AQVNPNIRIQK 611 Query: 738 YLDWTRKLDYTTKQPHYKRPKP-FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 + K P+ E SFS + + + P Y R +L+ Sbjct: 612 SFYKAGNNEKIEIAEITKTPEVIDRIYEVLQNGISFSMLDKFMACPLDFYYRYVLRFGEE 671 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINK------------NTPEINHLMKQI------ 838 ++D + GT+ H ++ +L ++K T + M++ Sbjct: 672 NKVEEDIESNTLGTIIHAVLEDLFTPFVDKFDDSGRKIAGKVMTEDDLTKMEKEVPLLVS 731 Query: 839 --IDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-----IEKIFVNIPAKM 889 ++HF +K + I + ++ + L + I S + + + + Sbjct: 732 KSFENHFSQDKNTWQTGTNHINFEVAKEMVVNVLRRDRAILSENPEKALFILGLEKKYET 791 Query: 890 AI---------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE------------- 927 I + + I L+G DRID G I DYK+G ++ Sbjct: 792 TIQFPEFARNNQPLEIRLSGICDRIDQF-DGVHRIIDYKSGSVNAEKVELKKTKNQETYE 850 Query: 928 -----TAQKLID-----PQLSLEAAALKAGSFSQID--CRKVANLFYIRLKQKFKIDCIT 975 +K QL + F + K + +K+ + Sbjct: 851 EAILLDKRKGKSTQKHVLQLLIYCYLY----FKETGIMTDKAGIFSFRSIKESPHFLKLP 906 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 D KK E EK L+ ++ + + PF + Y Sbjct: 907 EDFKKEDIPEFFEKI---LVNTISEMLDKTSPFT-----HNVDSKYCAY 947 >gi|134299274|ref|YP_001112770.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1] gi|251764588|sp|A4J4E2|ADDB_DESRM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|134051974|gb|ABO49945.1| UvrD-like DNA helicase, C terminal protein [Desulfotomaculum reducens MI-1] Length = 1155 Score = 225 bits (574), Expect = 3e-56, Method: Composition-based stats. Identities = 137/1050 (13%), Positives = 266/1050 (25%), Gaps = 153/1050 (14%) Query: 59 ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 E+R + G+ S IL P + E L + V + +RL R++ Sbjct: 21 EVRQRLRQNQGESSIILLVPEQATFQ--YEYMLATTPELKGMIWAQVLSFRRLA--FRVL 76 Query: 117 LIWRNKLPDIIKDLYPESPLSLPIS-----------PANAIWLAKNLADIIDIIETEEKK 165 I DL + L + A A +LA + ++ + Sbjct: 77 QEMGGAARAHIDDLGKKMVLRRILEQRKSELKVFHRAAKQPGFADSLASALSELKLYRIE 136 Query: 166 WEDLHALKNEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 ++L A L + E L + P Y L + Sbjct: 137 PQELQK-----GIQHMQEAPGSAIRDKLADLSLLYNDLEEFLSGR-FTDPDDYLNLLAQR 190 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 I I G TG P ++ + + V D + + Sbjct: 191 LPGS-RTVQGAEIFIDGFTGFTPQEYGVIEQMLGTADRVHVALCFDPMYLQEPCDELEFF 249 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + LLD R ++ E R S Sbjct: 250 YPTVET------------YHTLLDMAGALRISLEPPIICGKETPVRFQKDSAIAHLEKYY 297 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALIT 393 V+L+ N R E + A + R + ++ Sbjct: 298 FRHPLQA--------SDAAQGVSLVACANRRAEVEAAAREIIRLCREEELSWRDIVVVLR 349 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 N + + GI + I + ++ S L I + + + +K Sbjct: 350 DLTNYSDLINTIFNDHGIPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTD 409 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + LE L D + R T + + ++ Sbjct: 410 LIPVQRDDVD------RLENYVLAHGIRGNRWNDNRDWTYRRQYTLGEDCDIDDNEAEQL 463 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRK 571 + + ++HI + + T + + + R Sbjct: 464 AQLNVVRYAAIEHINNFSKKVANCGNVRQITTALFELLESLSVAERMEAWAKEAEVAGRL 523 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + + + L +I+E + N E++ ++ ++ + + + Sbjct: 524 IEAKEHAQIWDNVILLLDEIVEAMGEQELNLEEYLQVLEAGLESLKLGLIPPGLDQVVVG 583 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685 SR N ++ G+++GV P + S + L A + + Sbjct: 584 TLERSRNPNVKAALVLGISDGVLPARPVEEGLFSDYEREALREIGLNLAPGARRKLFDEQ 643 Query: 686 HDFEMAN--GTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------ 736 + A + L + ++ + S +QR+ L + L Sbjct: 644 YLIYTALTRASSRLWLSYPQADDEGKALMPSPVIQRVKELLPLIQEEILPVEPPCLGGDL 703 Query: 737 --------CYLDWTRKLDYTTKQPHY---------------------------------- 754 L T Sbjct: 704 AFIANPSRSLSYLAAMLRETVAGRLVDPVWQDVYSWFVQQPQYQESCRRVLAGLYHVNQE 763 Query: 755 --KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P L S S +++ P++ + LKL F D G F Sbjct: 764 TSLPPSMGRRLYGSRLRASVSRLERFTTCPFSHFLSHGLKLKERSQF--KLAAPDLGQFF 821 Query: 813 HNIITELIKKRINKNTPE----------INHLMKQIIDSHFEKENLPPHIDIIWR-HLFH 861 H + ++ + I + + + + E L + Sbjct: 822 HAALKLFAERIKALSLDWGQLSRGQIITITGEIVEELAPQLQNEILLSTARHRYLIKKLR 881 Query: 862 KISHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHL----------TGFADRIDLLK 909 + + E + S + V I E + L G DRID Sbjct: 882 RTLERAVVTLAEHARRGSFRPVAVEIGFGDNAELPAVQLDLADHCQMEMAGRIDRIDSAC 941 Query: 910 SGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIR 964 G + DYK+G K + QL AL+ A + Y Sbjct: 942 EGGQHYYSLIDYKSGQPDIKLADIVHGLKLQLLTYLDVALRYSKQLTQQEALPAAMLYFS 1001 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNL 994 ++ F +++ + L + +K L Sbjct: 1002 VRDPFVASTGPMTEEEAEKNLLKQLKMKGL 1031 >gi|332829180|gb|EGK01844.1| hypothetical protein HMPREF9455_01992 [Dysgonomonas gadei ATCC BAA-286] Length = 963 Score = 225 bits (573), Expect = 3e-56, Method: Composition-based stats. Identities = 146/1045 (13%), Positives = 301/1045 (28%), Gaps = 156/1045 (14%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF + A ++ T P +RA + + + Sbjct: 3 PFLYNVAQAYYKSYG-----------QDISRYTFVFPNRRAGIFFQHYLSQ-IAGRPIFS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL-ILIWRNKLPDIIKDLYPES 134 P I ++ D+ E+ I+ L L + I + + + E Sbjct: 51 PEILTVTDLFEKLS---------PYKKADRIEMLFLLYDIYIRVSSSTETFDEFLYWGEM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L+ + A+ L I ++ + ++ L + E +W +FL I Sbjct: 102 LLNDFDDVDKYLVDAQQLFRNIHDLKEIDAGFDYLTESQIEAIRRFWS---NFLPI---- 154 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + + + + + + Sbjct: 155 --------GENDKKKDFLEMWEVLFQ-----------------LYTSLREQLHNKGMAYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G I + + N I K + H S LL +L ++ Sbjct: 190 GMIF-----RDVTERLANNIDYKLPFEKVIFVGLNGH-SKSEETLLKYLHKRKIADFYWD 243 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 S + S M L + + V +I + +A + Sbjct: 244 YSSPLVRDPQNKASFFIDRNK---MLFPTQLTLEPEELSLDLPVVEVIGIPSAVGQAKYV 300 Query: 375 AIALRMSLDENKKK-------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 ++ +DE + +AL+ D NL + I+++ G L + S Sbjct: 301 HTIIKSLMDEQQITSSTQAMNTALVLPDENLLLPALYSIPGEIDKINVTMGYSLGNSSIS 360 Query: 428 SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 ++ + + + ++ H ++ N ++ + Sbjct: 361 GLMEHVFELQRNIRRSENYTGFYYKPVLAILNHRYITNVASDEAKVLRTNIIQYNKTTVS 420 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 L L+ + ++ ++ L T + Sbjct: 421 SQDLQSHPLFQLI---------------------FRPVFNWQDIPYYLQSILSTLNTTLS 459 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + E KT++ + + + Sbjct: 460 VNEKNEEK--------------DEDINARSIDIECEFIVEYYKTINKMDEALRNVLPEMS 505 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + ++ +LI G +V + E S L I+G LE+R L+FD LI+ +NEG++P A Sbjct: 506 VD--TYFKLLRKLIVGISVPFRGEPLSGLQIMGVLETRALDFDNLIILSMNEGIFPLKKA 563 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717 + F+ ++ +L T E ++ F + + R + T SR+ Sbjct: 564 ASSFIPYNLRKGFDLPTYEHQDSIFSYHFYRMINRAKRIYLLYDTRTEGLQTGEVSRYYN 623 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 ++ L F K K P L+ + S S I Sbjct: 624 QIKHLYNDSFDIREKLAVYKVSSTESLAISIQKTPQIMEKM-NVFLQGGDKRLSASSINT 682 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINH--- 833 +N P Y + ++ + + + GT+FH+I+ L + K T ++ H Sbjct: 683 YLNCPLQFYFSVVENMEEEDEIAETIEASTFGTIFHSIMEWLYEPFKGKMITADLLHNIS 742 Query: 834 ----LMKQIIDSHFEKENLPPH-------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 L+ ++I+ F + + + + K L + K+ I Sbjct: 743 KNNKLLTEMIERSFAENYFKSEKVKRLTGQNYLTGEVLRKYIRQVLATDAKLTPFIYIDS 802 Query: 883 VN-IPAKMAIESIGIH-LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP---- 935 I + S + L G DR+D + G I DYKTG + + + L D Sbjct: 803 EERIKKDYPLPSGKVVSLKGIIDRVDEVS-GHTRIIDYKTGKGVLRYKEMKDLFDKEMKD 861 Query: 936 ------QLSLEAAALKAGSFSQIDCRKVANLFYIR------LKQKFKIDCITNDKKKYSA 983 Q+ + + +I ++Y+R D + Sbjct: 862 RPKAVMQVFMYSHLYMLDHPDKILE---PGIYYLRNLFDTKFDPDVISKSGRGDGRITDF 918 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPF 1008 E + + + + + PF Sbjct: 919 SEYRPEFTGYFDACLEEIFDPQVPF 943 >gi|323483648|ref|ZP_08089032.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163] gi|323403075|gb|EGA95389.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163] Length = 1175 Score = 224 bits (571), Expect = 5e-56, Method: Composition-based stats. Identities = 136/948 (14%), Positives = 260/948 (27%), Gaps = 126/948 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----LKIA 191 L L S + I L ++ E L L +E W + + Sbjct: 106 LKLFGSHLDKIGFIGELKSMLSEFFQYGITAEVLEELVSEADKENWSAMLKQKLNDMVVL 165 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + + + + L R + + + G TG P RL+ + Sbjct: 166 HRAFKKYTEDKKCIVKEEILEMLCRVLPDS-ELIRGSVVTLDGYTGFTPVQYRLLELLLQ 224 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + +V +D + S S H L L RE+ Sbjct: 225 YCRRVVVTITMDPEENPY--------RESGPSHLFHMSKHTVCRLTDLAAQTGAGREEDI 276 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 L + P + + V L ++D +E Sbjct: 277 LLLQYPAYRFK--------NSPELQFIEKELFRFRGRKYEESSGAPGVVLFQSDTPLKEV 328 Query: 372 ISIA---IALRMSLDENKKKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 IA L + A++T A + +R + + I I + Sbjct: 329 QMIAGEIERLIKQEKYRYRDIAVVTGALDDYSREIVRQFETNRIPAFIDYKKNIMGNPMV 388 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 +L + L + K + ++ +K L LE AL S+ D Sbjct: 389 ELLRAALEVMQKNFSYESMFRYLKTGLVTDKQEMLS------RLENYALALGIRSFKRWD 442 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + R A N + ++ + + L + + Sbjct: 443 MAWEAVYRGAELINLEELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEALHIE 502 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + D+ + + + +LF +I E+ D Sbjct: 503 EKLQDYEAEFRET--------GEVSLEKEYSQVYGLVITLFDRITALLGDEAVGKKEYSD 554 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 I+ + V + + +RL + L G+N+G+ P + + L+ Sbjct: 555 ILDAGFEEIKVGLIPAVVDRVVVGDITRTRLSHIKVLFFAGVNDGIVPSASGRGGILTEA 614 Query: 668 MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQR 718 + L TA + + + L + + + S + + Sbjct: 615 ERRSLKSRQVELAPTAREEGFLQRLYLYLVMTKPSDRLYLSYAASSSDGKSLRPSGLIGQ 674 Query: 719 LLVLGGTDFFDNLKK---------------------------------------RGQCYL 739 +L + + R + Y Sbjct: 675 VLKMFPEKRVMRADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLRSELYR 734 Query: 740 DWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 D R+L + + R + + S + ++Q + YA + L+L Sbjct: 735 DELRQLVEASFYTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGLELSER 794 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN-- 847 + D G LFH I K+ +N + L+ + + + Sbjct: 795 --PVYELAAADIGNLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDYGNT 852 Query: 848 -LPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE---S 893 + + +I+ + E+ + E + M I Sbjct: 853 IMSSSARNQYLERKVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPVSKE 912 Query: 894 IGIHLTGFADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSF 949 IHL G DRIDL + G + I DYKTG A + QL + A Sbjct: 913 EAIHLKGRIDRIDLCEDGDLLYLKIIDYKTGKTKFDLMEAYYGLQLQLVVYMDAALEKEQ 972 Query: 950 SQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + +KV A +FY + D + KK+ +E + L+ L Sbjct: 973 RKHPDKKVVPAGIFYYNIA-----DPMVERKKEMDEEETKQAILEQLR 1015 >gi|325279706|ref|YP_004252248.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM 20712] gi|324311515|gb|ADY32068.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM 20712] Length = 938 Score = 224 bits (570), Expect = 6e-56, Method: Composition-based stats. Identities = 137/1068 (12%), Positives = 302/1068 (28%), Gaps = 183/1068 (17%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 + F + + ++ + A +TI P KRA L E + Sbjct: 2 ASFLQLLAKDIIRKYGTD-----------FADLTIIFPNKRAGLFLAEELSRQID-RPVW 49 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 +P I +L + +E+ + +L I +L + + K D + Sbjct: 50 MPEILTLTEYIEKHSGLKKAETLSL------IIKLYKSYTAVSGSSEKFEDFYF--WGNM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW---------LLAA 185 L+ + AK+L + ++ + + L + + +W Sbjct: 102 LLADFDDIDKYLVDAKDLFSNLIALKELDLNFPYLTEEQIKAIHRFWKSFNPEKFSREQQ 161 Query: 186 DFLKI------ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 +FLK+ ++ L E + + I+IAG Sbjct: 162 EFLKVWDKLYATYTHFKTHLAETGICYEGMNERYFCEHIETYAH---PEHILIAGFNALN 218 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 ++ + A D T+ + H KL Sbjct: 219 LCEKKIF-SFWQDSGIARFYWDYD---------------IYYTADEHQEAGHYIRENLKL 262 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 ++ N + + Sbjct: 263 F----------------------------------------PNELDIEHFNNFRYNGKTI 282 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 + + +A + +EN +++A++ + + V + + I+++ G Sbjct: 283 EYLAVPSTIGQAKLLPALTESLREENPRQTAIVLCEEQMLIPVMHSIPEYFSKINVTMGY 342 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 P + A+ +++ +L Sbjct: 343 P-----------------ARNTSVAALISML--------------------CDLKNYARQ 365 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + K ++ + Q + +++ V +++ L + Sbjct: 366 EGDTTYYYYKPVIALLNHKLIKDLCPEEIQQITNYINQKNIVYVIEKSLHFHELTRAIFS 425 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + L + D K + + L + F + I+ Sbjct: 426 SDQHEKIPVYLLKILNLLTRSVLKEEADPIEKEFVFTVYTQIQNLQNTFEE-----EGIE 480 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ II ++I ++ E L ++G +E+R+L+F+ LI+ NEG+ PK T Sbjct: 481 PENKLYMQIINKVIGNLSIPFSGEPLEGLQLMGLMETRMLDFNHLIILSANEGILPKTTL 540 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQ 717 F+ ++ L T E A+ F I S + SR+L Sbjct: 541 PASFIPYNLRFGFRLPTPEHQDAVFAYYFYRLLQRSRDIHILYTSGVKGMNGGEMSRFLY 600 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 ++ G + + + K P ++ +T S S + Sbjct: 601 QIKYESGLTVAERNFQNPISTQNPKEI--RIGKTPPILH-ILERYTRSEDQTISPSALNT 657 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMK 836 + Y + I ++ ++ D G +FH L T + Sbjct: 658 YMECSLKFYFKYIAQIKEKEELAEELDHRLLGNIFHECSESLYATIPGGEITKAAIDTIL 717 Query: 837 Q---IIDSHFEKENL-----------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 +I+ H + L + + + K +++KI + Sbjct: 718 ANGSLIEEHIRRSYLKVYDPKISRLIDSGSNELILGVIKKYLREMFSYDKKICP-FRLLA 776 Query: 883 VNIPAKMAIESI------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDP 935 + + ++ + + GF DRID + + DYKTG + +T + DP Sbjct: 777 MENRFHVPVKIGIEGQEKTVFVGGFIDRIDRT-DQGIRVIDYKTGADTTAFKTIASVFDP 835 Query: 936 ----------QLSLEAAALKAGSFSQ---IDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 Q + S+ I L + + + + + + Sbjct: 836 ANPTRNKAAFQTMVYCLMYDHVHPSEQPLIPGIYSTKLLF---GKDYDFRLKCDKELIQN 892 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 ++ +L +++ L + E PF EK Y + R Sbjct: 893 FRYYQQEFSDHLRQLLEELFSPEHPFCQTDN--EKKCRTCSYAGICRR 938 >gi|90415965|ref|ZP_01223898.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium HTCC2207] gi|90332339|gb|EAS47536.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium HTCC2207] Length = 923 Score = 224 bits (570), Expect = 6e-56, Method: Composition-based stats. Identities = 132/911 (14%), Positives = 258/911 (28%), Gaps = 86/911 (9%) Query: 185 ADFLKIASKYWTERLVE----------LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 ++ W E++ V + + E + + I G Sbjct: 26 QRLAAKITQAWGEQISADLTQSCSAWKQPRVYSVDHWLRACWDELQDQNHSLVRGLAIVG 85 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS-----NTTYS 289 + S R ++ V D WN ++ S + Sbjct: 86 TQQSRYYWERAIADDGLEQPVNFVKLAGDTLKALENWNLRADQVPGENPSVEYFKRWSGR 145 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 KLL + + + MV PP + + T + Sbjct: 146 FDELLRRNKLLTIQRSWQLVGQGFDCSALNREAEIMVYGFQSTPPLQAALIATASSQVTR 205 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA--LITADRNLARRVKLELT 407 ++V IEA++ +E A L N ++ ++ + +RV + Sbjct: 206 LESVNSSTEVVRIEAEDSPQELRLAASWAAQQLKINPEQRIGIVVPELNSSLQRVARVVN 265 Query: 408 RFGINIDI----------------SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 +D SAG L T ++ + L+ Sbjct: 266 EALNTVDNNTSLENPDGVKVIANISAGTALRDTPMVHSALLMIGLLKDKRPLSEWLHLLY 325 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + F ++ K + L + K+N + Sbjct: 326 SPYSAFDQLPLSFRA------DSEIQLRKRNRFDFSLSQFITAVTPKHKSNDDGLDNKDN 379 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHR 570 +E + PL + + S + W + V L ++ R Sbjct: 380 QLDESD------------ALNPLRHMRDYERRQINSQQSFAAWGEFFVGYLTDLGWPGKR 427 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 ++ +++ L I+ + +L P+ + L I Sbjct: 428 TANSIEYQQRQHWNRLLEQFTGLDNLGIEVGLSTAFKHLQQLAQDSVFHPQTADAP-LQI 486 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDF 688 LG LE L FD L + ++ +P + A N L Q + E+ + A Sbjct: 487 LGLLEGSGLRFDQLWIVDMHSQNFPASVAINQLLPAEFQRLHQMPHSLPERELEIANQLL 546 Query: 689 EMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 + N + LI + S + + LG ++ K Sbjct: 547 QSYKNNSGRLIVSHPKIRGEEQLDPSPLISDIP-LGSHKVLNSHKLFDSPQPHPPWLYQD 605 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 Q + P+ P R S + +K P+ + LK + + + D Sbjct: 606 YQCQLLADQAPPYSPRLETIRGGS-NLLKNQSICPFNAFVTHRLKAEPLEEPSQGLSALD 664 Query: 808 RGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDII 855 RG+L H I+ L + ++ + I+ + + Sbjct: 665 RGSLLHEILFRLWGIWKTSATLQALSDQQLQQQLATTIEQTLTEWAPRHPILRGDRFRGL 724 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 + K+ +LE E+ E + + + + I+L DR+D + + I Sbjct: 725 EQQRLEKLLTQWLEEEKLR-PPFEVVELESKNSVRFGDLEINL--RLDRVDQIGD-KLLI 780 Query: 916 TDYKTGDNP-KKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFK 970 DYK+G + + +DPQL L A +F+QI K+ ++ K Sbjct: 781 IDYKSGAVKESSWSGTRPVDPQLPLYVLASNPRANGCAFAQIKGGKIK---FVG-STDSK 836 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQSEYDHLAR 1029 + + + ++ L + S + +Y L Sbjct: 837 FLASEKVTGDTDLSQQWAEQIDAWQSALSNLADEFVNGHASVEVYDQTQFGYQDY--LLP 894 Query: 1030 VAEWREEYDIS 1040 + W EE DI+ Sbjct: 895 LNRWSEEADIN 905 >gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198059|gb|EGD55245.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length = 1101 Score = 224 bits (570), Expect = 7e-56, Method: Composition-based stats. Identities = 117/1061 (11%), Positives = 273/1061 (25%), Gaps = 136/1061 (12%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI------TGKKSTILPII 78 L+ T V ++P V + +RA +LR+E + + P++ Sbjct: 57 LIVDTAVARLLDPGVDPES---VLVLAANRRAATQLRAEITRRVLSAGGSLGGALREPLV 113 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 +++ N P RL+ + +I R L ++D P S Sbjct: 114 RTVHSYAFAVLRLQASAHGNPPP------RLITGSEQDVILRELLAGDVEDGADYWPAS- 166 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 A+ L D++ +DL L W+ A + + Sbjct: 167 LRPALTTDGFAQALRDLMMRAAERGLGPQDLAELGRTHDRPEWVAAGHAFRQYEE----- 221 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + +A + GS S AT + ++ Sbjct: 222 ---------GMLLRGAVGLDAPEASVTAVDAAELIGSALSAFATDPDVLAGQRQRIRHVL 272 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + P A + ++ + + + D ++ Sbjct: 273 VDDAQHLDPQAASLIRLIGTGADSTVVASDTDQSVFGFRGADPRFANAVADDDPDRDILL 332 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILE---NKIPNIQKCFSDVALIEADNEREEAISIA 375 E R + + P+ + + + +EA ++A Sbjct: 333 ENDFRGSPAVNAVGRALALRLPGARPHRYPTAAEPDDPEHRGHADVRVFSSAAKEATAVA 392 Query: 376 IALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSIL 430 +R + + + + ++ + ++ + G+ + A IP+ + Sbjct: 393 DMMRRAHLFDGVPWSEMAVIVRSVPRALPAIRRAFSSAGVPMATPATDIPIHRQRAVAAF 452 Query: 431 TSLLNAIFK--LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + +L D + L+ P P + + RG + Sbjct: 453 SLVLRVAGGGPPLDADEVTALLTGP-VGAADPTNLRRLRRGIRRIDEARGRE-------- 503 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + + + + L++ + + + T + + Sbjct: 504 ADSLDSLARALDDPELMGTYLGGLTDFEAIALKQVRKVVDAARTAHTAGVGVEETLWRAW 563 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S S + + ++ + F+ + + ++D Sbjct: 564 SASGLERRWTAQSLRGGRGGDQADRDMDAMLAMFEAAGTFADNLPAAGVLG-----FVDY 618 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + +L + + ++ ++ + +D + + G+ +G+WP ++ L Sbjct: 619 LGQLQIPRESRVAVSGVESVAVVSAHAAAGREWDVVAVPGVLDGLWPSLRSRGSVLHTPA 678 Query: 669 QSDL-----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 DL + A + R + ++ + + SR++ Sbjct: 679 LIDLLSGVGADAVDTVARGAVMLADERRLLLVACTRARSRLLVTAIEDGSGDASPSRFVP 738 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDW-------------------TRKLDYTTKQPHYKRPK 758 + G + + LD D + R Sbjct: 739 EIAEALGGYGATEPESADEIPLDPGVRRVLSLPSLVAELRAVAVAGADASGGPDERTRVA 798 Query: 759 ------------------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 P E PRT S S + L Sbjct: 799 AALLADLAQAGVSGAAPADWFGLVGPSTEVPLWTPENGPRTLSPSNVDALTKCSLRWMLE 858 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 R D ++ GTL H L++ + + Sbjct: 859 RHGG------RDGDAEQAVTGTLVH----TLVQAVAGNLDRTEVNAALHEVWERVSSPAQ 908 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---------GIHLT 899 + + +F + + + V + + + + L Sbjct: 909 WYSARELE--RAEGMLTNFRDWLRISREDLTAAGVEVEVDATLPTGVDDHGNALLPVRLV 966 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G DR++ G + D KTG NP + PQL+ AL+ G + + + Sbjct: 967 GRMDRLETDSRGRPVVVDVKTGKNP-VRAVDAEVHPQLATYQLALRLGGVTGLGSTEPGG 1025 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + + K + E ++ + + E Sbjct: 1026 GRLVYVASANKKTGAAQRVQPPLTPEQVDEWISVVREAARA 1066 >gi|320008692|gb|ADW03542.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331] Length = 1156 Score = 224 bits (570), Expect = 8e-56, Method: Composition-based stats. Identities = 129/1091 (11%), Positives = 265/1091 (24%), Gaps = 145/1091 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A + + +++A ELR G T P + Sbjct: 66 TLVEAVARRVAGGTDPARILVLTFSRKAAVELRDRMAARLGG--TRGPQATTFHSYCYAL 123 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ +L L + Sbjct: 124 VRAHQDADLFADPLRLLSGPEQDVTVRELLAG---QLGLEQAGLAHVRWPGELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258 + R E + + + + PA RL+ +A + G + Sbjct: 241 VHRAVLLAERPEVAAQLARNYDAVFVDEYQDTDPAQVRLLHALAGNRGSTAPGTGGGRTL 300 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + D + + + V L Sbjct: 301 IAFGDPDQSIYAFRGADVNGILDFPDTFRRADG--------------EPAPVGVLTTSRR 346 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + + ++ + + V E +IA L Sbjct: 347 SGAHLLEATRLLTRRMPLTRLPSDKVRAHRELSAVREGGRVEAYTYPTPSTELENIADLL 406 Query: 379 RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433 R + E + + L+ A V+ LT G+ ++I PL + L + Sbjct: 407 RRAHLEEGVPWRDMAVLVRAGGRSIPAVRRALTSAGVPLEIDGDDLPLRHEPAVAPLLTA 466 Query: 434 LNAIF-------KLNDFMAIATLVKHPLAKFGFP-------------------------- 460 L + D + + + P A Sbjct: 467 LRTVATAALRLGAPEDPDSAEAVEEDPEAGEAPAGDVSDDTGSGGRGTGTDGGRGAGTAD 526 Query: 461 --EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---------------NNT 503 + L L S D DL+ L ++ Sbjct: 527 GYDVAPGGLDTETALTLLASPLGSMDAADLRRLGRALRDEERAAGNRVPPPSGYLLARAL 586 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P A L + + L T + + + + W Sbjct: 587 AEPERLVTHDPAYARGAQRLGALLRKARELLEGGGTAEEALWTLWNGTPWPGRLERAALR 646 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 +L ++ E + + ++ + I +T+ + Sbjct: 647 GGAGGRNADRDLDAVCALFDTAA----RAEERTGGRGALNFLEEVDAQDIAADTLSRRAV 702 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 703 RPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGAL 762 Query: 684 AA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 A + A R L+ T + SR+L L +R Sbjct: 763 LAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGT--EPRDVTGRPRRPLAV 820 Query: 739 LDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRTY-SFSEI 775 +L TT P +P + + Sbjct: 821 ASLVAELRATTVDPGASEALRDAAARRLARLAALTDDEDQPLVPAAHPHRWWGLNEPTRS 880 Query: 776 KQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIK 821 + + D A L + G + H ++ + + Sbjct: 881 EVPLRDRDRPVALSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVH-VLADEVA 939 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 ++ + + FL ++ Sbjct: 940 SGRTAADLDVLMERLDSVWDGLVFDAPWKSQQEKDHAR--AALERFLRWHVMDRAGRTPT 997 Query: 882 FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938 + +E+ + + G DR++ G + D+KTG P K+ PQL+ Sbjct: 998 ASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVAAH--PQLA 1055 Query: 939 LEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KN 993 + A++ G+ ++ ++L+Q + K A E + Sbjct: 1056 VYQLAVREGAVDEVFDGRRPDAGGAELVQLRQPAPKKEGGDALPKVQAQEPLSGAWVSDL 1115 Query: 994 LIEIVTLLQNG 1004 L + + Sbjct: 1116 LATAAGRVLDE 1126 >gi|260425185|ref|ZP_05779178.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM 15470] gi|260404426|gb|EEW97973.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM 15470] Length = 1028 Score = 223 bits (567), Expect = 2e-55, Method: Composition-based stats. Identities = 132/1028 (12%), Positives = 265/1028 (25%), Gaps = 187/1028 (18%) Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 A+NL ++ ++ LH + G L + K + + L S Sbjct: 9 FAENLMNLFHQLDMFCISETALHDASLAEEGTPLGRKLADLSLLYKNYHDYLHTR--FSY 66 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 G L+ E + I I G G P R++S + + L Sbjct: 67 EGSLFDLLAGEIPKSEILRRSRIWIDGFNGMTPQKIRIVSALIHTAEEVTFTLPL-PDAK 125 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + N I + N+ + + H D L + R + Sbjct: 126 EGLSNEIFARPANLYALLSEKEPHF----------------DSVTLPEMKRFRCPRLRCL 169 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLD 383 + + S + ++ A + EA I+ + R Sbjct: 170 AADYFQNVPSPCPLPKETSPVPE------KGIHIVSAPDSHAEADFISRRILSLVRDKNL 223 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI------ 437 + L+ + ++ +R+GI + P++ +L LL+ I Sbjct: 224 RWRDILVLLRSADTYTDPLERSFSRYGIPVFTDEKQPMNNHPLVMLLDGLLHFIKAESRG 283 Query: 438 -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + I ++K + + + LE L+ + + R Sbjct: 284 KNRGFTREHIFRILKTEIFPSFPTD-----MIDKLENYVLKYHIRFSTWQKPWAFRDYRS 338 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS-ISDWT- 554 Q+ ++ + A + +L + P + S + + W Sbjct: 339 IDQEPAPLSDKEITKQNT-----ANTWREKVLSLLNPFLAGWKEALSAEDKCAFLYRWLT 393 Query: 555 -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L E K + K + SL +I+ E I+T + Sbjct: 394 EQQIPETLSVWDELEFEKTKKRPHLQVWKKVLSLLDEIVHVTGKDILPEEELCGILTDGL 453 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----- 668 T + + + + G EG +PK + F + Sbjct: 454 SALTFSMIPPTLDHVTVTSMDRGYAAEAKVVFIPGALEGSFPKKIDDSGFFTETEKQVLL 513 Query: 669 ---QSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVLG 723 + +L E + + + L + + S L+RL LG Sbjct: 514 KSARINLGNNLMELVQEEQFYTYLALTRASDALYLSYPAAAADGSAAEPSFLLERLKALG 573 Query: 724 ---------GTDFFDNLKK-------------------RGQCYLDWTRKLDYTT------ 749 + + R +W D+ Sbjct: 574 YYTENMEILPPSPYHDDPSFFANPNQALSLLPEILRNGRPSPTGNWAALKDWAEGNEYRE 633 Query: 750 --------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 K ++ S ++++ + PY + R + ++ Sbjct: 634 LMESKLAGLRYQNTAARLPKMLARKLFMKGGRFYGSVTKLQNYRSCPYQYFLRYGIGIEE 693 Query: 796 IPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEK 845 + D D G H I + ++ ++ +I+ + + I + Sbjct: 694 RNT--GEADYLDYGNYLHAGIHQFGEILKSQNRQWRQATDEEIEKISEDITEKITPRIKA 751 Query: 846 ENLPPHIDIIWRHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IH 897 + L + F + F + QS + + + + I + Sbjct: 752 DALSSDQSAKYTRRVLDQTFRRALQRFRQW--SRQSGFDTLDMEKEFYLRISASPTDSFT 809 Query: 898 LTGFADRIDLLKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 LTG DR+D G + DYKTG + + QL AL Sbjct: 810 LTGKIDRVDT--DGRYAAVCDYKTGSPKLSLNEIMEGLSLQLITYLLALSKT--KDTKDL 865 Query: 956 KVANLFYIRLKQKFKIDCITNDK------------------------------------- 978 A + YI L + K + + Sbjct: 866 LPAAMMYIYLHGRPKSISVPPNGIPHPKGKENTNGIFLNDPDVLRTLDSQSGTDDGFIGV 925 Query: 979 ---------------KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + L + K LI + L++GE + Sbjct: 926 SYVKDGSVKKTSPVLTAEEFEALKALTEKILIRLYNRLESGEIAIHPVKNGTLSPCSYCP 985 Query: 1024 YDHLARVA 1031 Y + R Sbjct: 986 YRSICRFD 993 >gi|266620645|ref|ZP_06113580.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479] gi|288867732|gb|EFD00031.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479] Length = 1159 Score = 223 bits (567), Expect = 2e-55, Method: Composition-based stats. Identities = 127/941 (13%), Positives = 255/941 (27%), Gaps = 117/941 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L ++ + + L A E + + + K + E + + ++ Sbjct: 117 GFIGQLKSMLSELYQYGITPDMLEAKIPETTSPMLRQKLEDISVIYKAFQEYIRDRYITT 176 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 ++ I + G TG P RL+ + +V +D + Sbjct: 177 EEIL--DVLCRHLPESKLIRDSVITLDGYTGFTPVQYRLLDLFLRYSRRVVVTVTVDPAV 234 Query: 267 PTAIWNTITEKS-----TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 P + + + H + L +LD R +R E Sbjct: 235 PERGKRGVQDLFYMSCEMIDKLNALARQNHVKRELDIVLDEHPAVR--YRRGAKRRAEQE 292 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-FSDVALIEADNEREE----AISIAI 376 R + + P ++ L + ++ L++A N EE I Sbjct: 293 ARVERKALTVSPASSALDFLEQNLYRYSGRVYSGKAEEIRLVQAVNPAEEISCVVREIGK 352 Query: 377 ALRMSLDENKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 LR + A+IT D + + I + + ++ + L Sbjct: 353 MLREGYR--YRDMAVITGDIGSFAGELIHQFDASEIPYFLDDKKSILKNPMVELVRAALE 410 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 I K + + ++ L E+ L R +N + + +RG+K + R Sbjct: 411 TIQKDFSYETMFRYLRTGLVVKPEDERKLDRLENYVIAMGIRGHKRWNTPWEG----WYR 466 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 N + + + + T + + Sbjct: 467 GGRDLNLEELNQLREEIMAPLTAFIEAFREEGRTVRTMSEAVVRLLEALSVEEKLLARES 526 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + + + + L ++ K + E+ +I+ Sbjct: 527 AFQE--------QGEFGLSKEYGQVYGLVVDLMDRLARLLGEEKVSRREYAEILDAGFSE 578 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673 V + + +RL + L G+N+G+ P+ + + + L Sbjct: 579 IKVGLIPAAVDRIVVGDITRTRLDHIKILFFIGVNDGIVPQKKENSSLFTDKEREFLGSH 638 Query: 674 ----LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLREN-NIPTIASRWLQRL------- 719 T + +A L + S + S L L Sbjct: 639 HIELAPTVRVESFRQRFYLYLALTKPEERLYLSYSAMDASGKSLRPSILLGELKKLFPQL 698 Query: 720 -------LVLGGTDFFDNLKKRG--------------------------QCYLDWTRKLD 746 V G + R + + KL Sbjct: 699 TAVAASDEVAGIPFSIREARGRLTRGLRNYGISREDSEFLELFRHFMMNEEQRESVEKLV 758 Query: 747 YTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + +R L S + ++Q + YA + L+L + + Sbjct: 759 DAAFYAYEERGIGKMAAKALYGTVLGGSVTRLEQYASCAYAHFLNYGLELAERQ--QYEL 816 Query: 804 DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN---LPPHID 853 D G LFH+ I K+ + E L+ ++ E+ L Sbjct: 817 AAMDIGNLFHDSIDLCFKRMKEQGGDWKTIGEEERKALVHGVVTEVTEEYGNTILKSSAR 876 Query: 854 IIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG---IHLTG 900 W KI+ + E+ + + + M I +HL G Sbjct: 877 NAWLARKVEKITDRTIWALAEQLKKGDFTPVGFEVSFSAADNLKAMKIPLSEAEALHLKG 936 Query: 901 FADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DR+DL + I DYK+G + QL + A + + Sbjct: 937 RIDRMDLCEDEEHIYVKIIDYKSGGTSFDLTALYYGLQLQLVVYMDAALEMEERRNPDKT 996 Query: 957 V--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 V A +FY + D + + S + + + LK L Sbjct: 997 VIPAGIFYYNIN-----DPVIEREGDMSPEAIDRRILKELR 1032 >gi|256831951|ref|YP_003160678.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] gi|256685482|gb|ACV08375.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] Length = 1059 Score = 222 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 130/988 (13%), Positives = 289/988 (29%), Gaps = 83/988 (8%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 T+VE R+ + V + T+ LR+ ++ I ++ + Sbjct: 37 HTMVELVRHAVHRGVSTERVLVLAATRHLASVLRTRITQVIDV-PVRGAIARTAPALAYS 95 Query: 88 KFTADLLLS-YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 +A L ++ ++ LA+++ L P P S+P + Sbjct: 96 LLSAHAAAQSQPLPRLITGPEQDHLLAQILAGHAQGLVP-----APAWPPSVPPQTLSLR 150 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA-- 204 L D+ + +L L W AA L ++ + Sbjct: 151 GFRDELRDLFMRVAEHGLTSGELFELGQRHERPDWCAAAQVLAEYDTVVELSSMQPDVGR 210 Query: 205 -SSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 P + + + T +I+ + AT L+ + +GA ++ Sbjct: 211 RDDPARIVSSAADILSHWDTGGRPTYDLVIVDDAQEMTAATVALLQVLHR--DGARIVMA 268 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE-- 319 D + + + + N + T L +R+ V++ Sbjct: 269 GDPDMTVQGFRGASPRHLNQATFPRTAPGGFAAERLTLSTVWRSHPAVRERVREVTSAIA 328 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 G + + + + K + + V A + E +I LR Sbjct: 329 SAGIVAHRRATSRHVNRAQDPQASPPDEKPTTVSRTQPGVEAHLAPSIHVETSAIVNTLR 388 Query: 380 MSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLN 435 + A+I +R++ L R + + + + L L +L Sbjct: 389 HWHIDEAIAWSSMAVIARSTAHLQRIRRALERAQVPVTVLGTDVALRDEPAVRGLLDVLA 448 Query: 436 AIFKLN-DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 D + +++ + + + L LR L++D Sbjct: 449 LARDDTIDLDLVLRVLQGVYGG--LDSLGIRQLRRHLRSAELR----QDGARTSDELLID 502 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 +AT +++ H ++ ++ + ++ ++ D Sbjct: 503 LMATIRDHGHHDIPPHHVAAAAIGRLTAMIQAACTVMQ-----GHTHDAQTALWAVWDAA 557 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 ++ T D + L ++ I + + Sbjct: 558 QVAPTWRHIALSDSPASGRAHDDLDAVMALFRSAETHVDRMPDPSVE-SFIAFIEAQDLP 616 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ----- 669 +++ + + + +L + + +I+ L +G+WP T ++ L + Sbjct: 617 ADSLAIRNQSDHVVSLLTPQAAAGRQWQRVIITALQDGIWPNLTLRDSLLGSLHLVDILT 676 Query: 670 ---------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT------IASR 714 D +T + + ++ H++ T + P+ Sbjct: 677 GRASEDGGPRDSAARTDILHDELRSFALSLSRAQEHVMLTAVDDDEQSPSPFLHLAAPQP 736 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---------RPKPFPPLEA 765 L G ++ + L + + P P Sbjct: 737 RPITLGDESGPLDMRSVTTAARAALHQALLREDAEQAHQLASLLAAMEPHTPASDPHTWY 796 Query: 766 QPRTYSFS-----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRT----DRGTLFHNII 816 Q S + E+ L P V + L + + GTL H++ Sbjct: 797 QAHPVSTTLPLFHELTTLPLSPSRVDVAQTCSLRWALETSGGQPASGLSQSVGTLIHDV- 855 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQ 875 Q++D +++ NLPP R + ++ ++ Sbjct: 856 -------AAHAPMGTITQFTQLLDERWDQLNLPPGWPAQRLRSQAQTMVGKLAQYTSMVR 908 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 + ++ V P + I ++G DR+++L+SG I D KTG A ++P Sbjct: 909 DDVVEVLVEHPFTVEIAGA--RISGSIDRVEILRSGDARIVDLKTGRT-APTQADTQVNP 965 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYI 963 QL + A+ G+ ++ A+L YI Sbjct: 966 QLGIYQLAVLHGAVPGVEHTHGADLLYI 993 >gi|298530046|ref|ZP_07017448.1| putative DNA repair protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509420|gb|EFI33324.1| putative DNA repair protein [Desulfonatronospira thiodismutans ASO3-1] Length = 904 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 109/816 (13%), Positives = 258/816 (31%), Gaps = 90/816 (11%) Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 L A+W++ ++ S+ T ++ R + Sbjct: 123 WNLQDQQDPALWSSPDHRAFLEWSTAFRDYTQG----RGWMEEARHTRHVARMFEKGCLP 178 Query: 320 MYGRSMVISKSFL-PPDTSDMRNTDILENKIPNIQKC--FSDVALIEADNEREEAISIAI 376 ++ L P + D L KI +++ + L+ + +E + A+ Sbjct: 179 CPAHLVLAGLENLSPVQEHILDVLDGLGCKINHLEPARNDPAITLMPLADREQEMRTCAL 238 Query: 377 ALRMSLD-ENKKKSALITADRNLARRVKLE--------------LTRFGINIDISAGIPL 421 +R L+ +++++ ++ D R+ + L D+S G PL Sbjct: 239 WVRTKLESDHEQRIGVVVPDLYSVRQEIIHTFDAVLHPDTAFEPLPPEKRAYDLSLGRPL 298 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 S LL+ ++ ++ P K E L + Sbjct: 299 SGYPLIRSALHLLDLRLDPLPLETVSAVLNSPFLKGAKSETPARSGLETLLRKTREPQIS 358 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++D + + L ++ Sbjct: 359 FSFLLDKAADSSKSWSCLVLARS-----------------------------LKAFQARI 389 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 S W + LQ++ L + ++ + ++ ++ + + Sbjct: 390 KELPSTQPPSAWAQDLDLLLQDLGWPGDITLSSHEYQTV-QAFNACLKRLAGLDRVMPST 448 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + I ET+ + I+G LE+ +FD L + GL + WP++ + Sbjct: 449 GMSQATQTLSRILNETIFQPEPPEVRVRIMGMLEAESESFDELWIMGLTDQAWPQSPEPS 508 Query: 662 PFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQR 718 PFL +Q L++ + + + A T I + RE ++ + S L+ Sbjct: 509 PFLPVSLQKHLDMPRSSPQHELDYARRIMHRLLQNTSRAILSYPCREEDLELLPSPLLRE 568 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + + + D L + +++ + P +A ++ Sbjct: 569 I------SGLEFNEPGLLPDPDPWAGLSPGEQLKYFQNEQAPPLSQASRAPGGTGVLRSQ 622 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEIN 832 P+ +AR + + +RG + H + + ++ Sbjct: 623 ALCPFQAFARHRMHARSLEEPVVGLGPPERGIIMHAALEYFWQSCRDQAALLNLTGDRRL 682 Query: 833 HLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ Q +D + + + + R + +L EE+ Q + + Sbjct: 683 QMIDQAVDQAIREMHSQRPQTMTSRFQELERERLQDLLQEWLALEEQRQP-FQVQELEKR 741 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL- 944 + ++I + +++ ADR+D L+ G + + DYK+G + ++ ++PQ+ L Sbjct: 742 SNISINGLELNV--VADRMDRLEDGRLVVIDYKSGRHAMSEWFKKRPVEPQVPLYTLFCP 799 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK-------YSADELSEKSLKNLIEI 997 + + + ++ L Q+ I DEL + K+L ++ Sbjct: 800 EHVAGVYFGVVRKGECAFVGLGQEDGIVPGCKGFASHKLTSHYQHWDELLQDWKKSLEKL 859 Query: 998 VTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032 G+ + + S + Q + + + R+ E Sbjct: 860 AQEFMQGQ----ARVDPESPNACRQCDLESICRIFE 891 >gi|239982164|ref|ZP_04704688.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1079 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 122/1040 (11%), Positives = 255/1040 (24%), Gaps = 140/1040 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + ++RA +LR + + P + Sbjct: 22 TLVESVAARLAAGTPPERILVLTFSRRAAVDLRDRMAQRLSTATA--PRATTFHSFCYAL 79 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ ++ + Sbjct: 80 VRAHQDADLFAEPLRLLSGPEQDVAVRELLAGQIELGRQGRARVH---WPDELRACLTTR 136 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL + A Sbjct: 137 GFADEVRAVLARSRELGLGADALAEFARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAEL 196 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258 + R E + T + + + PA RL+ +A + G + Sbjct: 197 VHRAVLLAERPETARQLAETYDAVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTL 256 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + D + + V L Sbjct: 257 VAFGDPDQSIYAFRGADVNGILEFPETFRRADG--------------APAPVAVLTTGRR 302 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + ++ + + V E +IA L Sbjct: 303 SGAHLVEATRLVTRRMPLTRLSADTVRAHRSLSPARDGGRVEAYTYPTTGAELDNIADIL 362 Query: 379 RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433 R + E + + L+ + + V+ LT G+ +DI PL + L + Sbjct: 363 RRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALTSAGVPLDIDGNDLPLRHEPAVAPLLTA 422 Query: 434 -----------------------------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 + D TL+ PLA ++ Sbjct: 423 LRAAATAALQDRAEEEAGPVPEPEPDAGTQDTAPAWLDTETALTLLASPLAALDAADQRR 482 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 E A L + + E A LL Sbjct: 483 LGRALRDEERAAGNPLPPPSDTLLARALA------------EPERLVTHEGYAHGARLLG 530 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + T L + + + + W + + +L Sbjct: 531 ELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAGRNADRDLDAVCALFAT 590 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 ++ E + + +I + I +T+ + + + ++ S+ L + + Sbjct: 591 AA----RAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMTAHRSKGLEWRLV 646 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLIY 699 ++ G+ EGVWP + L L + + F +A L+ Sbjct: 647 VVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAAERLVV 706 Query: 700 TRSLRENNIPTIASRWLQRLLVL-------------------------GGTDFFDNLKKR 734 T SR+L L V L++ Sbjct: 707 TAVKAPAEDGDQPSRFLSELGVEPKDVSSRPRRPLSVAALVAELRATTVDPRVSATLREA 766 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLIN 780 L L +P P + T S S + QL N Sbjct: 767 AAHRLAKLAALTDEDGRPLVPTAHPDRWWGMREPTRSQVPLRDRDAPVVLSGSALDQLAN 826 Query: 781 -DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + R + G + H ++ + + ++ + Sbjct: 827 TCALQWFLGR-----EVKADAPASAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSV 880 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IH 897 + + + FLE ++ + + + + + Sbjct: 881 WDALAFDAPWKSVQEKENAR--QALERFLEWHTLDRAGRTPVASEHDFDITLGAGPYEVR 938 Query: 898 LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR- 955 + G DR++ G + D+KTG P PQL++ A+ G+ + Sbjct: 939 IRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEVAHH--PQLAVYQLAVTEGAVDPLFDGV 996 Query: 956 --KVANLFYIRLKQKFKIDC 973 + + L+Q Sbjct: 997 RPEPGGAELVHLRQPAPKKE 1016 >gi|328884880|emb|CCA58119.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712] Length = 1088 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 130/1077 (12%), Positives = 262/1077 (24%), Gaps = 153/1077 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE + + +++A ELR G + P + Sbjct: 34 TLVEAVAARVAQGTDPERLLVLTFSRKAAVELRDRMAARLGGR--RPPQATTFHSYCYAL 91 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ L + L+ + L + Sbjct: 92 IRAHQDAELFAEPLRLLSGPEQDLAVRELLAGHIDLEK---AGLGGIRWPDELRACLTTR 148 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL L Sbjct: 149 GFADEVRAVLARSRELGLAPDALARFAERVGRPDWKAAAAFLAEYLDV----LDLQGVLD 204 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + AE + + I + + PA RL+ +A G +V D Sbjct: 205 YTELVHRAV-LLAEDISLPSYDAIYVDEYQDTDPAQVRLLHALAGGGRGTVV-AFGDPDQ 262 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + + L R L + + R + Sbjct: 263 SIYAFRGADVNGILDFPTAFGGAD---------VRVLRTARRSGATLLGATRLLAQRMPM 313 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + ++ + EA +IA LR + E+ Sbjct: 314 PR----------LPADRVRAHRDLTATRDGGRTEAYTYPTASAEAENIADLLRRAHLEDG 363 Query: 387 ---KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIF---- 438 + A++T ++ LT G+ ++ A PL + L L A+ Sbjct: 364 VPWQDMAVLTRAAATLPSLRRALTSAGVPVETDAADTPLRHEPAVAPLLLALRAVAQVAG 423 Query: 439 -----------------------------------------KLNDFMAIATLVKHPLAKF 457 + L+ PLA Sbjct: 424 GRSARAEGASTTGRPARAEGAGTTGHGAAPGPEPVEPGAATEWLTTETALELLASPLAGV 483 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 L R AL D+ P + Sbjct: 484 --DPADLRRLGRALRDEERAAGTKVPAPSDV---------LLTRALAEPERLAAHDPSYT 532 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 A L + + T L T + + + + W +L Sbjct: 533 RGAHRLGKLLQETRTLLADGGTAEEALWVLWNGTPWPGRLERAALRGGPAGRNADRDLDA 592 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 ++ + + + ++ + I +T+ + + + ++ S+ Sbjct: 593 VCALFETAARAEERVGGRGVLNF----LEELDAQDIAADTLTRRHTRPDAVRLMTAHRSK 648 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANG 693 L + +++ G+ EG+WP + L L A + A Sbjct: 649 GLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATR 708 Query: 694 TR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 R L+ T SR+L L +R +L TT P Sbjct: 709 ARNRLVVTAVKAAAEDGDQPSRFLSELG--AEPKDVPGRPRRPLAVPALVAELRATTVDP 766 Query: 753 HYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 P + + + + + D A Sbjct: 767 DASPALRDAAAQRLAELAALTDEDGQPLVPAAHPDRWWGLFEPTRGPEPLRDRDRPVALS 826 Query: 790 ILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 L + G + H ++ + + ++ Sbjct: 827 PSSLDNLVSTCSLQWFLGREVKAAAPATAAQGFGNVVH-VLADEVASGRTPADLDVLMAR 885 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + + FL + + +E+ Sbjct: 886 LDSVWDALAFDAPWKSAQEKQHARV--ALERFLSWHVMDRGGRTPAASEHGFDVTLEAGE 943 Query: 896 --IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + G DR++ + G + D+KTG P K+ PQL++ A++ G+ ++ Sbjct: 944 YEVRIRGSMDRVETDEHGRAYVVDFKTGKSAPTKDEVAHH--PQLAVYQLAVREGALDEV 1001 Query: 953 DCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLIEIVTLLQNG 1004 + ++L+Q + K A E + L + + Sbjct: 1002 FDGRRPEPGGAELVQLRQAAPQKEGGDALPKVQAQEPLAGEWVGELLATAAGRVLDE 1058 >gi|134097673|ref|YP_001103334.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910296|emb|CAM00409.1| possible ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1051 Score = 221 bits (563), Expect = 5e-55, Method: Composition-based stats. Identities = 131/1024 (12%), Positives = 272/1024 (26%), Gaps = 128/1024 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----GKKSTILPII 78 L+ + R+ + P +V + ++RA +R+E G ++ P++ Sbjct: 42 TLIAEVAADRIRHGGVAPE---NVLVLCASRRAAARMRAEITRRLTASDDGLRTAPEPLV 98 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 +++ + P RLL + R+ L +++ P+ P Sbjct: 99 RTVHSYAFAVLRLQAVREQMPAP------RLLNGPDQDALVRDLLQGDLEEGAPDWPER- 151 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + A+ L D++ + L L W+ A F Sbjct: 152 LRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRF----------- 200 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 Q + + S T + V ++ Sbjct: 201 ----------ARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLL 250 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + P W ST ++ + V Sbjct: 251 VDDAQHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADPGSVRDADPDGGNTVVLT 310 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + S + + + V + +E +EA +A L Sbjct: 311 VDHRMSKAVRAAVQRLAER-LPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 369 Query: 379 RMSLDENKKKS---ALITADRNLARR--VKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 R + + A++ L+ + L + +PL+ L +L Sbjct: 370 RRAHLLDGVPWSDMAVVVRSTGLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 429 Query: 434 LNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 L + D + A L+ L R +A G+++S D+ Sbjct: 430 LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDL------ 483 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + L + A + + + ++ + S Sbjct: 484 -------LVEVLRGDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQAS 536 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + +T + + + +L ++ + + + + Sbjct: 537 GLQQRWLTVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADY----LTGQ 592 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-- 669 I G ++ P K + + +L + ++ + + G+ EG WP + L Sbjct: 593 QIAGSSLAPSAPKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVD 652 Query: 670 -------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL-- 720 +D TA + A+ R + ++R + SR+L L Sbjct: 653 VLSGVDAADRVSATAPLLAEERRLLLVAASRARSGLLVSAVRGEDE--QPSRFLDELEGV 710 Query: 721 --VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------PKPF 760 + +RG + +L P Sbjct: 711 VSDPDSAERPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAH 770 Query: 761 PPLE---------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P +P S S + L P A R Sbjct: 771 PDTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGG------QDTAELA 824 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 + GTL H L++ + T E H + R ++ Sbjct: 825 SVTGTLVHA----LVQAAADGATEEQLHRALDEAWESVDAGAPW--FSRKERARVERMIE 878 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTG 921 SF ++ + ++ V + IE + L G DR++ G + D KTG Sbjct: 879 SFQAWLVASRAELTQVGVERDLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTG 938 Query: 922 DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 P K A++ PQL++ A G+F+ + + + + ++ + Sbjct: 939 KTPVSKNDAEEH--PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAATERVQ 996 Query: 981 YSAD 984 D Sbjct: 997 RGLD 1000 >gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] gi|262086726|gb|ACY22694.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] Length = 1129 Score = 220 bits (561), Expect = 7e-55, Method: Composition-based stats. Identities = 124/1077 (11%), Positives = 277/1077 (25%), Gaps = 149/1077 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI------------TGK 70 AL+ V R + P V + +++A LR E Sbjct: 68 TALIVDAAVARLRAPDVEPES---VLVLASSRQAAATLREEITRRVLAGSDATDGRRALG 124 Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + P+++++ N P RL+ + ++ R L I+D Sbjct: 125 GALREPLVRTVHSYAFAILRLQASAHNNPPP------RLITGSEQDVVLRELLAGDIEDG 178 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P A+ L D++ E+L AL W+ AA Sbjct: 179 AGYWPA-HLRPALGTDGFAQALRDLMMRAAERGAGPEELAALGRRHRRPEWVAAAR---- 233 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 A + + ++ + EA + GS S AT + Sbjct: 234 AYAQYEQNMLLRG----------AVGLEAPGASAPAVDAAELVGSALSAFATDPELLIAQ 283 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----KLLDFLDIK 306 +++ P A + ++ + + + D L Sbjct: 284 RARIRHLLVDDAQHLDPQAAQLVKLIGTGTTSTLIAADTDQSVFGFRGADPRFADDLAEP 343 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 D L + + + + + + + V + + Sbjct: 344 GSDRDILLDTNFRSEAQIERVGRVLASRLPGARPHPYPQAP-AESPATGAGGVQVRVFGS 402 Query: 367 EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPL 421 +EA ++A LR + + + + ++ + ++ G+ + A G+PL Sbjct: 403 SAKEATAVADLLRRAHLFDGVPWSRMAVIVRSVSLALPPLRRAFRSAGVPLTTPASGLPL 462 Query: 422 STTLHSSILTSLLN--------AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L +L A D A L+ P+ R Sbjct: 463 HRQRAVVALMLVLRVVAARTTPAQADDFDIEDAAALLSGPIGAADPGAMRRLRRGVRRSS 522 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + D + + + ++ L++ ++ ++D + Sbjct: 523 EKRGDDGAQQDS------LTALRSAILDPLLAARYREDLTDAERAPLDRVLDVVAAAEKV 576 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + + + + +L ++ F+ + Sbjct: 577 HTAGRGLEETLWAGWQATGLERRWAASAVRGGPGGEQADRDLDAVMAMFEAAANFADTLP 636 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ + +L + S ++ +L + +D + + G+ +G+ Sbjct: 637 AAG-----PAGFVHYLGQLQIPRDSRTATAASDSVTVLSAHAAVGREWDVVAVAGVLDGL 691 Query: 654 WPKNTAKNPFLSRVMQSDL-----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 WP ++ L+ DL + A + R + + Sbjct: 692 WPSLRSRGSVLATGQLVDLLDGVDPDAVDKLARPAAAIADERRLLLVACTRARRRLLVTA 751 Query: 703 LRENNIPTIASRWLQRLLVLG--------------GTDFFDNLKKRGQCYLDWTRKLDYT 748 + + + SR++ + D R L Sbjct: 752 VEDGSGEASPSRFIGEIADALAGSTQDADADTPAPEELPLDPGVDRVLSLPSLVATLRSV 811 Query: 749 TKQPHYKRP------------------------------------KPFPPLEAQPRTYSF 772 + P P + S Sbjct: 812 VTAGVGEMPDERTMAAARLLARLADADVPGAHPRDWYGLAAPSSDAPLWTPDDGAVVLSP 871 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S + L R D G+L H L++ + P Sbjct: 872 SNVDALTRCSLRWLLERNGG------RDGDGTPALTGSLVH----TLVQAVAGELDPTEV 921 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + I + + + +F E +S ++++ V + I Sbjct: 922 TEALRAIWDRVDTGAGWYSARELE--RAESMLVNFREWLRISRSDLDEVGVELAVDATIP 979 Query: 893 SIG----IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG 947 + + L G DR++ +G + D KT P K AQ QL+ AL G Sbjct: 980 ATPDDPAVRLRGRMDRLERDGAGRPVVVDVKTAKTPISKADAQDHA--QLAAYQVALAHG 1037 Query: 948 SFSQIDC----RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + D + + + + + + EL ++ + + Sbjct: 1038 GLTGADDAVVSAEPGGARLVYVSSANRNSGAAERVQAPLSPELLDEWITVVRHAARA 1094 >gi|291006368|ref|ZP_06564341.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1058 Score = 220 bits (561), Expect = 7e-55, Method: Composition-based stats. Identities = 131/1024 (12%), Positives = 272/1024 (26%), Gaps = 128/1024 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----GKKSTILPII 78 L+ + R+ + P +V + ++RA +R+E G ++ P++ Sbjct: 49 TLIAEVAADRIRHGGVAPE---NVLVLCASRRAAARMRAEITRRLTASDDGLRTAPEPLV 105 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 +++ + P RLL + R+ L +++ P+ P Sbjct: 106 RTVHSYAFAVLRLQAVREQMPAP------RLLNGPDQDALVRDLLQGDLEEGAPDWPER- 158 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + A+ L D++ + L L W+ A F Sbjct: 159 LRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPEWVAAGRF----------- 207 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 Q + + S T + V ++ Sbjct: 208 ----------ARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHVERQRVRHLL 257 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + P W ST ++ + V Sbjct: 258 VDDAQHLDPQQYWLLQRLGSTAAEFVLAGDPDQAVFTFRGADPGSVRDADPDGGNTVVLT 317 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + S + + + V + +E +EA +A L Sbjct: 318 VDHRMSKAVRAAVQRLAER-LPGAGPQRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQL 376 Query: 379 RMSLDENKKKS---ALITADRNLARR--VKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 R + + A++ L+ + L + +PL+ L +L Sbjct: 377 RRAHLLDGVPWSDMAVVVRSTGLSLPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 436 Query: 434 LNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 L + D + A L+ L R +A G+++S D+ Sbjct: 437 LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDL------ 490 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + L + A + + + ++ + S Sbjct: 491 -------LVEVLRGDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQAS 543 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + +T + + + +L ++ + + + + Sbjct: 544 GLQQRWLTVAERGGITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADY----LTGQ 599 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-- 669 I G ++ P K + + +L + ++ + + G+ EG WP + L Sbjct: 600 QIAGSSLAPSAPKENAVSVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVD 659 Query: 670 -------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL-- 720 +D TA + A+ R + ++R + SR+L L Sbjct: 660 VLSGVDAADRVSATAPLLAEERRLLLVAASRARSGLLVSAVRGEDE--QPSRFLDELEGV 717 Query: 721 --VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------PKPF 760 + +RG + +L P Sbjct: 718 VSDPDSAERPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAH 777 Query: 761 PPLE---------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P +P S S + L P A R Sbjct: 778 PDTWYGLPPSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGG------QDTAELA 831 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 + GTL H L++ + T E H + R ++ Sbjct: 832 SVTGTLVHA----LVQAAADGATEEQLHRALDEAWESVDAGAPW--FSRKERARVERMIE 885 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTG 921 SF ++ + ++ V + IE + L G DR++ G + D KTG Sbjct: 886 SFQAWLVASRAELTQVGVERDLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTG 945 Query: 922 DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 P K A++ PQL++ A G+F+ + + + + ++ + Sbjct: 946 KTPVSKNDAEEH--PQLAVYQLAAALGAFNDGAWTEPGGARLLYVAKPEARTGAATERVQ 1003 Query: 981 YSAD 984 D Sbjct: 1004 RGLD 1007 >gi|220904251|ref|YP_002479563.1| hypothetical protein Ddes_0978 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868550|gb|ACL48885.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1000 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 126/1080 (11%), Positives = 279/1080 (25%), Gaps = 154/1080 (14%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 PF + L T S + VP R + + + Sbjct: 10 PWQRPFLPALKEHLHEITGGRP-----------GSALVIVPHNRPWRYMAQLYAA--DGY 56 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + +LP + L D V + + + + + + + ++ Sbjct: 57 TGLLPKVLPLADAVGIWRASGSAAPLHTANTLDR----------VALLHACVNTLSREDE 106 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + + A + LA +++ + + + D+ ++ L Sbjct: 107 TLAARFARMDMALFLPWGLRLAALLEEMYGQMVEIRDIAH-VEDEVAAPAAALLGALGRI 165 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE---HLMKGTKGPIIIAGSTGSIPATARLMST 248 S + L+E N ++P + L R +A L P+++AG L+ Sbjct: 166 SHAYESALLEKNWTTPGLDLLNLARGDAPIPPLLQPQDGRPVLVAGFYLLTGGEDHLLRC 225 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + GA + D + + LA + + Sbjct: 226 LWQA--GADICLHGDPALAENSRPHWACEE-----------------LAAWMRRWKARAA 266 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 +L + + + + + + + Sbjct: 267 TALQLDEDEKNHRPEYRFFAGYDCHSQLAALHRDLKRADPTDGTAEKTTRPENDGSPIPV 326 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 E + +A++ D +L V L ++++S G PL + + Sbjct: 327 E---------------SGHSTAIVLTDSSLLMPVLHHLP--HKDVNVSMGYPLERSPLNR 369 Query: 429 ILTSLLNAIF-----KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 +L LL + + ++HP Sbjct: 370 LLDGLLRLQATRSDEGRYYWRHLLQCLRHPYVNMLRTRDA------------------YG 411 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + L+ + + T + E +L L + + + LV Sbjct: 412 QPLLLRDALRPLERIIREGTRFVDLDEVILECRGQLPEALAQLLEETLEALV---RAPAG 468 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 ++ + L+ D R P ++ + Sbjct: 469 AATTEDMARVLHGLCSFLRCRGDDLWRHFPLDAEAMYRLMRQTVPVLRENLLARTPFPLT 528 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + ++ E V + + + L +LG LE+RLL+F + + + P N A++P Sbjct: 529 TLHGMTREVLGQERVPFEADPLTGLQVLGMLETRLLHFGRVFIVDATDDRLPGNPAQDPL 588 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSL-----RENNIPTIASRWLQ 717 L ++ L L + + AAH + + + + SR+++ Sbjct: 589 LPDSLRQVLGLPDSRRRERAAAHTLYRLCAGAQEVSFFWQEGISRSSLFDGKKSRSRFVE 648 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSE 774 +LL L ++ S + Sbjct: 649 QLLWQEELARGAVLAPGEPPLETAVCEVRAAASGEKQLERSADMNDALARLLREPLSATR 708 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEI 831 + + P + + L + D GT H+ + L + +N ++ Sbjct: 709 LDVYLQCPLRFAWQYLCGLRPPKEINEGDDPAAVGTCIHDTLKALYEPYLNKTVRSGDIS 768 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIEKIFVNIPAKM- 889 ++ E L + + + + + E + + + + K+ Sbjct: 769 AETVRARFYEQLEAHGLRKLLPADSCLMLEEAAPMRLMRFLENQPADVTIMALEKELKVP 828 Query: 890 -AIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-------------------------N 923 + G DR+D G + DYKTG Sbjct: 829 LRLAGRDYAFVGAMDRVDWR-DGLFYVLDYKTGGIKKLDGSLWTDLAFFSRAGQLCDTLT 887 Query: 924 PKKETAQKLI---------------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 P +E + + QL A +A +++ + L+ Sbjct: 888 PAQEAGESHLQQLEALFSQLRERLPSLQLPCYLAMAQASGM-----TPLSDAALVELRDD 942 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + D L + L F + K Y L Sbjct: 943 GREHPLFGGLVDEDLDAALGFCRTAL-ALPLLHMEYSPCFAARPD---KHCRWCPYAGLC 998 >gi|311898255|dbj|BAJ30663.1| putative UvrD/REP helicase family protein [Kitasatospora setae KM-6054] Length = 1090 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 117/1059 (11%), Positives = 264/1059 (24%), Gaps = 117/1059 (11%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE + V + +++A ELR G + P + Sbjct: 48 TLVEAVARRVADGTAPERVLVLTFSRKAAMELRDRMTARIGATA---PQATTFHSFCYAL 104 Query: 89 FTADLLLS--YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ D + + Sbjct: 105 LRAHQAPEEYAEPLRLLSGPEQDVMVRELLAGGAE---DAKAGVGTIGWPLDLRACLTTR 161 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ +L W AA FL R V A Sbjct: 162 GFADEVRAVLARSRELGLGERELERFAAGVDRPDWAAAAHFLAEYLDVLDLRGVLDYAEL 221 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R + ++ + + + PA RL+ +A +G ++ D Sbjct: 222 VHRAVLLAERPDVSARLRERYDVVFVDEYQDTDPAQVRLLRRLAG--DGRDLVAVGDPDQ 279 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + ++ + L + R L + E+ R Sbjct: 280 SIYAFRGADVNGILEFPDAFRHADGRPAEVK----VLRVSRRSGAVLLAATRELARR--- 332 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + ++ + V + E S+A LR + E Sbjct: 333 -------MPMGRLPADKLAAHRALLPSREGGAVEVYTYPTPGAELDSVADLLRRAHLEDG 385 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 + + L+ A V+ L G+ ++I PL L L + Sbjct: 386 VPWGEMAVLVRAGSRTIPAVRRALAAAGVPLEIDGDDLPLREESAVVPLLLALRVCAEG- 444 Query: 442 DFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 A+ + H L R R + + + I Sbjct: 445 -PGALTADLAHTLLTGPLAALDGSDLRRLGRTLREEERRALAADGAPGVVRPAEELIREA 503 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 ++ + L+ + + + + + W + Sbjct: 504 LDHPELLALLDTPYARRAHELGTLLRKVRELLAGGASAEDALWELWDGS--RRWRERLER 561 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +L ++ + + ++ + I +T+ Sbjct: 562 AALRGGPAGRNADRDLDALCALFETAARAEERVTGHRG---ALDLLAEVEAQDIAADTLH 618 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 619 VRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 678 Query: 680 YIGQAA----HDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 A + A + L+ T SR+L+ L + +R Sbjct: 679 PAALLAEERRLFYVAATRAKDRLVVTAVKAPAEDGDEPSRFLRELYRETLDPRTGRVLER 738 Query: 735 GQCY----------------------------LDWTRKLDYTTKQPHYKRPKP------- 759 D + +L + Sbjct: 739 TPRVKVADVTARPRRPLSVPALVAELRAVTVDPDRSPQLRRAAAERLATLAAATDEDGRP 798 Query: 760 ---------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 QP S S ++QL + + Sbjct: 799 LVPAAHPDQWWGLDDPTAAPHPLREPDQPVRLSGSGLEQLETCTLQWFLE-----KDVKA 853 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 G + H + E+ R + + + + + + Sbjct: 854 GTTASAAQGFGNVVHALADEVGSGRTPADLAVLMERL-DTVWDALAFDAPWKSTQ--EKG 910 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDIT 916 FL + + + ++ G + + G DR++ +G + Sbjct: 911 EARAALERFLRWHVLERERAT-VATEHGFDLTLDVGGVAVRIRGSMDRVEADAAGRAYVV 969 Query: 917 DYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK----VANLFYIRLKQKFKI 971 D+KTG P ++ + QL++ A+ G+ + + ++L+ K Sbjct: 970 DFKTGKHVPTDKSLPEHR--QLAVYQLAVGNGALDGLPGFEHGAVPGGAELVQLRTPDKK 1027 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 D ++ +E + L++ + + Sbjct: 1028 DPEAPKVQRQLPEESTPWIEDLLVQTAGKVLAERFTPTA 1066 >gi|328907790|gb|EGG27553.1| UvrD/REP helicase [Propionibacterium sp. P08] Length = 1093 Score = 220 bits (559), Expect = 1e-54, Method: Composition-based stats. Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L+ V + T+ + Q LR+ + + + P + ++ + Sbjct: 74 LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 119 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S +RLL R L +P+ + A A ++ + + E Sbjct: 120 SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 175 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 +DL W + FL A + +IAL R A+ + Sbjct: 176 CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 235 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +I + R +S +A ++ D + + Sbjct: 236 RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 287 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 +L + +D + + + +S + ++ Sbjct: 288 --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 333 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400 + + VA + A + IA LR + + + A++T Sbjct: 334 LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 393 Query: 401 RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454 + L I + S + T + L + +ATL+ +PL Sbjct: 394 IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 453 Query: 455 AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496 A + L N ++ V R Sbjct: 454 AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 513 Query: 497 ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 H + + ++V + + L + + + S Sbjct: 514 EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 573 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 WT + R L L + + + I I+ Sbjct: 574 WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 626 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I + + E + ++ + FD + + GL EG WP + + S Sbjct: 627 IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 686 Query: 673 NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725 +L A E + + R + ++ S + L + Sbjct: 687 SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 746 Query: 726 --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757 ++ Q LD R + P Sbjct: 747 LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 806 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P A S S I +L+ P + R F+ G+L H I Sbjct: 807 APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 861 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876 E + ++ + + ++ F + Sbjct: 862 ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 914 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 + V + + + S + G DR++ G + D KTG + +ET + Q Sbjct: 915 QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 973 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + + A + +G I + V+ + L+ ++ S Sbjct: 974 IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 1019 >gi|333024560|ref|ZP_08452624.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071] gi|332744412|gb|EGJ74853.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071] Length = 1146 Score = 219 bits (558), Expect = 2e-54, Method: Composition-based stats. Identities = 122/1086 (11%), Positives = 254/1086 (23%), Gaps = 144/1086 (13%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLVE+ + + +++A LR G P + Sbjct: 66 ETLVESVAARVAAGADPERLLVLTFSRKAAVSLRDRMALRIG--PASAPRATTFHSYGYA 123 Query: 88 KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 A + P +S ++ L + L+ + + + Sbjct: 124 LVRAHQEAGPDGTPVRLLSGPEQDLAVRELLEG---ETALAAQGRGRVRWPGQLRACLTT 180 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 A + ++ LH + W AA FL + V A Sbjct: 181 RGFADEVRAVLARSRELGLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 240 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + R + + + + + PA RL+ +A G +L D Sbjct: 241 LVHRADLLARRPDVAKDLAQAYDAVYVDEYQDTDPAQVRLLEALAG--QGRTLLAFGDPD 298 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + V L Sbjct: 299 QSIYAFRGADVNGILDFPDAF--------------RTTGGAPAPVAVLPTARRAARRVLD 344 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 L + + + ++ + + + E +A LR + E+ Sbjct: 345 ATRALTLRIPLTRLPAAAVRAHRDQLPTREGGGAEVYTCPSPGAETDHVADLLRRAHLED 404 Query: 386 KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 A++ + ++ LT G+ +D + PL L + L + Sbjct: 405 DVPWGDMAVLLRAGSRLPALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAE 464 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------------------ 483 + P K S E + G + Sbjct: 465 ARGETPQAGETPPVGQTPAGKGESEPVREGESGPVPGADSGPEAEGEPVPVGEIQPVPVP 524 Query: 484 --------------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + + L R+ D LA L Sbjct: 525 QPSPEPSWIATETAVDLLASPLCGMDAADLRRLGRALRAEERAGGNPVPPPSDVLLARAL 584 Query: 524 VD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + + + + L T + + + + W + Sbjct: 585 AEPERLIAHDAAYAKAARELGLLLARTRSLLAKGGTAEEALWELWNGTRWPARLERASRR 644 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 +L ++ E + + + + I +T+ + Sbjct: 645 GGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTLSGRTV 700 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + ++ ++ L + +++ G+ EGVWP + L L Sbjct: 701 RPDAVRLMTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGAL 760 Query: 684 AA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 A L+ T SR+L L V +R Sbjct: 761 LAEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAV 818 Query: 739 LDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEI 775 +L TT PH P + Sbjct: 819 PALVAELRATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVN 878 Query: 776 KQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIK 821 + + DP A L + G + H ++ + + Sbjct: 879 EVPVRDPAQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVA 937 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++ + + FL ++ + Sbjct: 938 TGRSPADLDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRTGRTPV 995 Query: 882 FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938 P + + + I + G DR+D +G + D+KTG P + PQL+ Sbjct: 996 ASEHPFDVTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLA 1053 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 + A+ G+ + + L+ + + K + + L E Sbjct: 1054 VYQRAVAEGA---VGPLTPGGAELVHLRLEASKKDPLSPKVQPQEPPEGDWLPDLLTEAA 1110 Query: 999 TLLQNG 1004 + N Sbjct: 1111 ARVLNE 1116 >gi|296448463|ref|ZP_06890345.1| double-strand break repair protein AddB [Methylosinus trichosporium OB3b] gi|296254015|gb|EFH01160.1| double-strand break repair protein AddB [Methylosinus trichosporium OB3b] Length = 500 Score = 219 bits (558), Expect = 2e-54, Method: Composition-based stats. Identities = 149/501 (29%), Positives = 247/501 (49%), Gaps = 19/501 (3%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 NVF+I P + F ALL+G ++ PL LA TIYVPT+RA + L ++ Sbjct: 5 NVFSIPPGASFLGAFTRALLDGEIIPGL-SRASGPLALAETTIYVPTRRAARALAAQLAA 63 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTA-----DLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + +LP I LGD+ E++ +A ++ L P V+ I R L LA L+L W Sbjct: 64 AIETPAALLPRILPLGDLDEQEASALFHAEEIGSDDALAPAVAEIDRRLTLAALVLHWAK 123 Query: 122 KLPDIIK--------DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 L I + P L + SPA+A LA+ LA ++D E+ + L +L Sbjct: 124 SLRHAIVAIDPLGRIEHDPREMLLVAPSPASACALAEELARLVDEFIIEDVDPKALGSLA 183 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIII 232 + + ++ + FL+IA + W + L E + AL+ A+ + L + +GP+I Sbjct: 184 EDAHDRYFAITTHFLRIALEDWPKILKERECIDGATRRKALVAAQIDALTRGAARGPVIA 243 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 GSTG+ P TARL++ + GA+VLPGLD + A W + E + THP Sbjct: 244 LGSTGAQPTTARLIAAIERLETGAVVLPGLDLEMDEASWRRVGE---TSVAREEAAVTHP 300 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 Q L +L+ + + R +V+R+G + R +++ + P D++D+ E + Sbjct: 301 QAMLKRLIGIIGVARAEVRRIGAPPAAIEARGRLLAAALKPADSTDLW-RAFREAHGASF 359 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 + V+ IEA +EREEA+++A+ +R +L+ + +AL+T DR +ARRV EL R+ I Sbjct: 360 DAALAGVSFIEAADEREEALALALCMREALETPGRTAALVTPDRMIARRVCAELARWDIE 419 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 +D SAG PL+ T ++ + ++ + A L+ HPL G ++R +E Sbjct: 420 VDDSAGRPLAATPIGALARLVAASLEDGVSAVDAAALLAHPLTSLGLGRAEIARIAPLVE 479 Query: 473 LVALRGNKNSYDIMDLKSLVL 493 + LR + + + Sbjct: 480 IGVLRNVERRPGPLAEMAAAA 500 >gi|23098636|ref|NP_692102.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis HTE831] gi|81746700|sp|Q8ERW6|ADDB_OCEIH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|22776863|dbj|BAC13137.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis HTE831] Length = 1166 Score = 219 bits (558), Expect = 2e-54, Method: Composition-based stats. Identities = 119/990 (12%), Positives = 259/990 (26%), Gaps = 143/990 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-----KNEKYGMWWL---LAADFLKIASKYWTER 198 L ++ ++ E +DL L + + Sbjct: 118 GFLGQLETMLTELKRYEITPDDLRMQQSHLTDFVHQSPSEQGLTRKLSDLIYIYETF--I 175 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 Q+ L+ + + I I G P +++ + N V Sbjct: 176 YALQGTYVDSEDQLQLLIQQIKQSSILNNADIYIDGFHSFTPQEQSVLTELMKTSNSITV 235 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 LD W + + L +L + ED L + Sbjct: 236 ALTLD-----DPWKE-----DASELDLFYQPSQTYHVLKQLAWEAGVPVEDPIILDTLEG 285 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 R +++ + + + EA + R E IA + Sbjct: 286 NFQNR------------PYFAHMEKYFDSRPAPAYEGEVPIEIFEAVHPRAEVEGIAQQV 333 Query: 379 RMSLDEN---KKKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + +N + AL+ ++ + + + I P+ ++ S+L Sbjct: 334 LELIRDNRYRYRDIALLIRQPEVYHDLIETIFNDYELPVFIDEKRPMLHHPLIELIRSIL 393 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGN-KNSYDIMDLKSLV 492 + AI ++K L E L + + LE + ++ + + Sbjct: 394 EVVQGNWRNDAIFRVLKTGLIPSADDEFPLTMDSIDQLENYVIEFGIRSRHQWIGENKWK 453 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSIS 551 R ++ + E +E D ++ I + + +++ Sbjct: 454 YQRFRGFDSSAQTDRER-----ELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMY 508 Query: 552 DWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 W + + + D+ E+ + LF +++E K + + Sbjct: 509 QWLEELKIPDQLEVTRKYYDDQGLPEKGREQEQVWDAVIQLFDEMVEIAGEEKMDLSVFQ 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + I+ + + SR+ N L G+NEG+WP + + Sbjct: 569 VALDAGIETLQFSHVPPSMDHIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSDGMIDE 628 Query: 667 VMQ---SDLNLKTAEKYIGQA-----AHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQ 717 + LK A+ Q L + L + + S+ + Sbjct: 629 AERLLLEQNGLKLADTSERQLLDDWFYMYLAFTVAKDRLKISYLLSDEEGKAKMPSQLIH 688 Query: 718 RLLVLGGTDFFDNLKKRGQC--------------YLDWTRKLD--------YTTKQPHYK 755 R+ L L + + T +L Y+ Sbjct: 689 RVEELFPATKNHILLQDPEDESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWEVYQ 748 Query: 756 RPKPFPPLEAQPRT----------------------------YSFSEIKQLINDPYAVYA 787 P S S ++ Y +A Sbjct: 749 WYVEHHPQGGTTHRVLQGLHYENKPESLQKDTVEQLYPKRIQASVSRLETYYRCSYQHFA 808 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----------NHLMKQ 837 + L L+ D D G LFH + ++ + + + Sbjct: 809 KYSLNLEERRT--YKLDAPDIGQLFHEALKKITEWIHAEGNDFSALTKSQSSHYANRAVT 866 Query: 838 IIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA------- 887 + + + L + ++ F+ E+ S + + + Sbjct: 867 ELSPVLQHQILHSSNRYAYIQKKLEEVIARATFVLGEQARLSHFSPVGLELGFGDGNNQI 926 Query: 888 ---KMAIESI-GIHLTGFADRID--LLKSG-FVDITDYKTGDNP-KKETAQKLIDPQLSL 939 M +E+ + L G DR+D L++ ++ I DYK+ I Q+ Sbjct: 927 PSLSMLLENGYELVLRGRIDRVDKAELENNLYLRIIDYKSSSKGLDLTEVYYGIALQMLA 986 Query: 940 EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---- 994 L A + Y + + + + + ++ L Sbjct: 987 YLDVVLTHSEKWLGQQADPAGVLYFHVHNPMISAKGSMTEADIEEELFKQYKMQGLLLSN 1046 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 EIV ++ + + S + + Y Sbjct: 1047 EEIVKMMDSSLETGSSQIVPAALKKNGGFY 1076 >gi|282866609|ref|ZP_06275651.1| UvrD/REP helicase [Streptomyces sp. ACTE] gi|282558511|gb|EFB64071.1| UvrD/REP helicase [Streptomyces sp. ACTE] Length = 1137 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 126/1088 (11%), Positives = 260/1088 (23%), Gaps = 158/1088 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A + + +++A ELR G P + Sbjct: 66 TLVEAVAARVAAGTDPARMLVLTFSRKAAVELRDRMATRLGG--ARGPQATTFHSYCYAL 123 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ ++ L + Sbjct: 124 VRAHQDADLFADPLRLLSGPEQDVAVRELLAG---QVGLERSGLAHVRWPDELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-------NGAIVL 259 + R E + + + + + P+ RL+ + + G ++ Sbjct: 241 VHRAVLLAERPEVASRLAESYDAVFVDEYQDTDPSQVRLLHALTGNRTAAPGTGGGRTLI 300 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D + V L Sbjct: 301 AFGDPDQSIYAFRGADVNGILDFPDTFRRFDG--------------APAPVGVLTTSRRS 346 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + + + ++ + + V E +IA LR Sbjct: 347 GAQLLAATRLLTRRMPLTRLPSDKVRAHRELSAAREGGRVETYTYPTASTELENIADLLR 406 Query: 380 MSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLL 434 + E + + L+ A V+ LT G+ +++ L + L + L Sbjct: 407 RAHLEDGVPWRDMAVLVRAGGRSLPSVRRALTSAGVPLEVDGDDLALRHEPAVAPLLTAL 466 Query: 435 NAIF-------------------------------------------KLNDFMAIATLVK 451 + + D TL+ Sbjct: 467 RTVATAALRRPGDEAPGANALEAEAPGDGDGTTAPGEAPAPDTAEGTRPLDTETALTLLA 526 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 PL L R AL P Sbjct: 527 SPLG--SMDAADLRRLGRALRDEERAAGNRLPPPSG---------ELLARALAEPERLVT 575 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 A L + + L T + + + W Sbjct: 576 HDPAYARGAQRLGALLRKARELLEGGGTAEEALWTLWDGTPWPGRLERAALRGGAAGRNA 635 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 +L ++ E + + ++ + I +T+ + + + ++ Sbjct: 636 DRDLDAVCALFDAAA----RAEERTGGRGALNFLEEVDAQDIAADTLSRRSVRPDAVRLM 691 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HD 687 S+ L + +++ G+ EG+WP + L L A Sbjct: 692 TAHRSKGLEWRVVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLF 751 Query: 688 FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + A R L+ T + SR+L L V +R +L Sbjct: 752 YVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLAVAALVAELR 809 Query: 747 YTTKQPHY-----------------------------------------KRPKPFPPLEA 765 TT P R + Sbjct: 810 ATTVDPAASEALRDAAAHRLARLAALTDDEGHPLVPAAHPYRWWGLNEPTRSEVPLRDRD 869 Query: 766 QPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 P S S + QL N + R + G + H ++ + + Sbjct: 870 HPVVLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGR 923 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ + + + + FL ++ + Sbjct: 924 TPADLDVLMERLDSVWNGLVFDAPWKSQQEKDQAR--DALERFLRWHVMDRAGRTPVAGE 981 Query: 885 IPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEA 941 + +E+ + + G DR++ G + D+KTG P K+ PQL++ Sbjct: 982 HAFDVTLEAGEYAVRIRGSMDRVEQDTEGRAYVVDFKTGKAAPTKDEVAAH--PQLAVYQ 1039 Query: 942 AALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLIE 996 A++ G+ ++ + ++L+Q + K + E L Sbjct: 1040 LAIREGAVDEVFDGRRPESGGAELVQLRQGAPKKEGGDALPKVQSQEPLSGEWVPDLLAT 1099 Query: 997 IVTLLQNG 1004 + + Sbjct: 1100 AAGRVLDE 1107 >gi|331005036|ref|ZP_08328441.1| RecB family exonuclease [gamma proteobacterium IMCC1989] gi|330421164|gb|EGG95425.1| RecB family exonuclease [gamma proteobacterium IMCC1989] Length = 921 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 102/732 (13%), Positives = 210/732 (28%), Gaps = 83/732 (11%) Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRV----- 402 + + + +E DN E + A R ++++ + +I + R+ Sbjct: 204 LASPNYTPKTLQRVEFDNSDAEMQAAAQWARTTVEQQADVRIGIIVPNLGQCRQQVERAF 263 Query: 403 -----KLEL----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-----NDFMAIAT 448 R+ + + SAG PL T + LL + D + Sbjct: 264 ISEFEAHSFNPTTERYTLPFNFSAGTPLGDTPLIAATLQLLKLQEQRGRSQEWDTEYLVH 323 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + P E A L + L+ + + Sbjct: 324 CLLSPFWGNYTSELERRTA---LVSKLQSLGTFTISGDTLRYWAEKIESKLNSANENE-- 378 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 L D++ Q + G S W ++ + L + Sbjct: 379 ------------RRLFDYLNQFHQ-----FSTSTINKGKHLPSRWIEIFLQQLDILQWPG 421 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 R + +++ + L S + A + + S + Sbjct: 422 ERTPDSQEYQQ-TQLWYQLLESFAGLDSVLNAVDNNTAIQQLQSMANHMPFQAKVPDSPI 480 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH-- 686 ILG LE L+F + GL++ VWP + N L +Q + N+ A A Sbjct: 481 QILGILEGAGLHFSHCWVMGLHQQVWPPAPSPNSLLPIRLQREHNMPHASSLRELAYAQS 540 Query: 687 --DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 D + +I++ E++ R L L+ + +W Sbjct: 541 LTDNYR-HCADTIIFSTPAHEDDGEQ---RLLASQLISDIPLTELTTQATDDGLENWYHS 596 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 L + P K +P+ + + L Sbjct: 597 LQNSRDLELIDCADA-PAFTGNQLVGGAGLFKSQAENPFDSFVKYRLGAPLPIDAVNGFS 655 Query: 805 RTDRGTLFHNIITELIKKRINK--NTPEINHLMKQIIDSHF----------EKENLPPHI 852 ++G + HN + + ++ N+ + + ++I + ++L + Sbjct: 656 HIEKGHILHNGLAAIWQQLKNQESLLALSDTALAELITEQVNIAISDIKRHKPKHLSDPL 715 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 I ++ +L E+K + + + + I++ DR+D L+ G Sbjct: 716 CKIESERQSQLITQWLALEKKR-PPFTVVAIEEARTITFNGMNINI--RIDRVDQLQDGR 772 Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCRKVANLFYIRLKQ 967 I DYKTG + ++ +PQL L A VA+ + L Sbjct: 773 YLIIDYKTGKSNINAWKGERPKEPQLPLYALTYSENVNEVKGISFAQINVADQHFKGLGD 832 Query: 968 KFKIDCITNDKK-----KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK--SNI 1020 I +K + + + L ++ G+ + ++ Sbjct: 833 GDIASGINPIEKNKMGLPNTWESTIAHWQQKLDSLLNEFTQGDC----RIEYLDEIAKTY 888 Query: 1021 QSEYDHLARVAE 1032 +Y + R E Sbjct: 889 AGDYLRINRFHE 900 >gi|323141944|ref|ZP_08076801.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413579|gb|EFY04441.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067] Length = 1069 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 111/942 (11%), Positives = 258/942 (27%), Gaps = 163/942 (17%) Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + L N G M + K I I + +A Sbjct: 174 FYLLYRQYLENNNWYDLEGKYRLAMEMLQKQDCKIPWKHIYICDFFSLDQVQINFLQALA 233 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + ++ + +++ S K + + Sbjct: 234 KHVDDLVI------SMSYEGRRVSSDEKAKYESIT------------KFMRASTNTVNAL 275 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 K LG + + P MR L + + V ++ +E Sbjct: 276 KILGATVASLAA-----EELGQAPAGVAMRQLRHLGHAPAPVPA--EGVESYCFASDEQE 328 Query: 371 AISIAIALRM--SLDENKKKSALI-TADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + ++ + ++ ++ D +L ++ +G+ + + L + Sbjct: 329 MRWVLKRIKQQLAHEKCAANRIVVAVRDFSLYSGLRQLADEYGVPVSLPQTTALVAQPLA 388 Query: 428 SILTSLLNAIFKLNDFMA-IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +L LL A + + A L+ L + F + + + + Sbjct: 389 VMLRLLLTAAGRGREAAAAYLELLSCELLRLFFDVDVETASSLRTQTYFKTRQEAMQKAH 448 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +L + E + ++ + + Y Sbjct: 449 ELL---------------------GDATELWQQLDAFIET-TKAEAAISEYAEQLTQLVQ 486 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIE 604 +L + + L + L L ++ + E S K + Sbjct: 487 SLPLEERL----GSLHKQGVPLDFMLACLRSKDAVLKAVQQLVRDYEVAKNSDYKLTLSQ 542 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 W ++ + + + + + + L+FD++ + GL EG +P+ +N Sbjct: 543 WNSLLQEALGQVQLTLRFGRRDGVLFTEVGNVQGLSFDSVYIMGLREGEFPQAKNENWIY 602 Query: 665 SRVMQSDL-----NLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQ 717 + + L +L T + A+ F A + LI T E+ ++AS +L+ Sbjct: 603 NDTERKQLADAGYDLPTVGSSFDEDAYFFAQAVCAAQKELILTW--HEDVGESLASSYLE 660 Query: 718 RLLVL---------------------------GGTDFFDNLKKRGQCYLDWTR------- 743 + L + + + + Sbjct: 661 EIWKLFLQPGSEDKRLDKDYVKAQTLPDFGVASAEEAYSDKRFAAADLPKIAELSGQKAP 720 Query: 744 -KLDYTTKQPHYKRPKPFPPLEAQPR--------------TYSFSEIKQLINDPYAVYAR 788 + R P + +S S ++ P+ A Sbjct: 721 SAEQQLAAKADILRKAQQPEYNGDLQNSLPTKLLRKQIGSRFSASRLEAYAACPFRFLAE 780 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---------KNTPEINHLMKQII 839 ++ D G + H + ++ + T E+ + + + Sbjct: 781 KVWLAQAAEEADDLLQPRDAGDILHQTLKSFVEPYLGSKIIGETMADLTEELEAVFEDVC 840 Query: 840 DSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE---EKIQSSIEKIFVNIPAK--- 888 + ++ I + + ++ +L E ++ V Sbjct: 841 TAALNDGGSTVASVNEDIWQVEKQRLWRMLVRWLRFEYADQQRWGGFRPQAVEWNFSSKN 900 Query: 889 -----MAI-ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 + + + + L G DRID ITDYK+G P ++ +D QL + Sbjct: 901 GKPLYLTLSDGSDVSLIGRVDRIDSDGE-HAFITDYKSGTPPTGSAMEQGLDLQLPVYLL 959 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFK--------------IDCITNDKKKYSADELSE 988 A+ A S Q+ V+ Y LK+ + + + + D + Sbjct: 960 AVAALSKEQLA---VSGGCYYSLKEGKRKSAFLLESVGNSDLPYKKPKNAAELTWDSFKQ 1016 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + + L + + + G+ L + ++ + RV Sbjct: 1017 EKEQLLKDYIERIYAGDFA----LAGCRRCDVYCPLHDICRV 1054 >gi|291454012|ref|ZP_06593402.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291356961|gb|EFE83863.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1125 Score = 219 bits (556), Expect = 3e-54, Method: Composition-based stats. Identities = 122/1040 (11%), Positives = 255/1040 (24%), Gaps = 140/1040 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + ++RA +LR + + P + Sbjct: 68 TLVESVAARLAAGTPPERILVLTFSRRAAVDLRDRMAQRLSTATA--PRATTFHSFCYAL 125 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ ++ + Sbjct: 126 VRAHQDADLFAEPLRLLSGPEQDVAVRELLAGQIELGRQGRARVH---WPDELRACLTTR 182 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL + A Sbjct: 183 GFADEVRAVLARSRELGLGADALAEFARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAEL 242 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP--------NGAIV 258 + R E + T + + + PA RL+ +A + G + Sbjct: 243 VHRAVLLAERPETARQLAETYDAVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTL 302 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + D + + V L Sbjct: 303 VAFGDPDQSIYAFRGADVNGILEFPETFRRADG--------------APAPVAVLTTGRR 348 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + ++ + + V E +IA L Sbjct: 349 SGAHLVEATRLVTRRMPLTRLSADTVRAHRSLSPARDGGRVEAYTYPTTGAELDNIADIL 408 Query: 379 RMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSL 433 R + E + + L+ + + V+ LT G+ +DI PL + L + Sbjct: 409 RRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALTSAGVPLDIDGNDLPLRHEPAVAPLLTA 468 Query: 434 -----------------------------LNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 + D TL+ PLA ++ Sbjct: 469 LRAAATAALQDRAEEEAGPVPEPEPDAGTQDTAPAWLDTETALTLLASPLAALDAADQRR 528 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 E A L + + E A LL Sbjct: 529 LGRALRDEERAAGNPLPPPSDTLLARALA------------EPERLVTHEGYAHGARLLG 576 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + T L + + + + W + + +L Sbjct: 577 ELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAGRNADRDLDAVCALFAT 636 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 ++ E + + +I + I +T+ + + + ++ S+ L + + Sbjct: 637 AA----RAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMTAHRSKGLEWRLV 692 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLIY 699 ++ G+ EGVWP + L L + + F +A L+ Sbjct: 693 VVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPGALLAEERRLFYVAATRAAERLVV 752 Query: 700 TRSLRENNIPTIASRWLQRLLVL-------------------------GGTDFFDNLKKR 734 T SR+L L V L++ Sbjct: 753 TAVKAPAEDGDQPSRFLSELGVEPKDVSSRPRRPLSVAALVAELRATTVDPRVSATLREA 812 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLIN 780 L L +P P + T S S + QL N Sbjct: 813 AAHRLAKLAALTDEDGRPLVPTAHPDRWWGMREPTRSQVPLRDRDAPVVLSGSALDQLAN 872 Query: 781 -DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + R + G + H ++ + + ++ + Sbjct: 873 TCALQWFLGR-----EVKADAPASAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSV 926 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IH 897 + + + FLE ++ + + + + + Sbjct: 927 WDALAFDAPWKSVQEKENAR--QALERFLEWHTLDRAGRTPVASEHDFDITLGAGPYEVR 984 Query: 898 LTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR- 955 + G DR++ G + D+KTG P PQL++ A+ G+ + Sbjct: 985 IRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEVAHH--PQLAVYQLAVTEGAVDPLFDGV 1042 Query: 956 --KVANLFYIRLKQKFKIDC 973 + + L+Q Sbjct: 1043 RPEPGGAELVHLRQPAPKKE 1062 >gi|239908037|ref|YP_002954778.1| hypothetical protein DMR_34010 [Desulfovibrio magneticus RS-1] gi|239797903|dbj|BAH76892.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 996 Score = 219 bits (556), Expect = 3e-54, Method: Composition-based stats. Identities = 148/1035 (14%), Positives = 301/1035 (29%), Gaps = 125/1035 (12%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 V + P +RA + L E+ G + ++ + + E + Sbjct: 37 DFTDVVVLFPLRRAARHLCDRLAELPGLPKPL--LLPEIAAIGEWTAALGADCAPVPPVM 94 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + R+ L ++ + + P + LA+I++ + + Sbjct: 95 LDALDRVAILHDIVRDIAATASED---------EAFPADITDFFPWGLELAEIMEELFRQ 145 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL L+ + L + + +RL++ +P Sbjct: 146 GIPGQDLAHLEGQVLAP-AAALLGRLGAIHQRYRQRLLDEGLGTPGLLAALAAENAPAVA 204 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + + G A L+ T+ + +W+ + Sbjct: 205 ERFAGKRLFACGFAVLTGAEKTLLQTLWKK------------GLLELVWHADPALADGGR 252 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + H KRL L R T Sbjct: 253 PIHFACREH-------------------KRLLADWKAKAVVLGDGKARKLRAKADPSRGT 293 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 +L+ N+ + IEA + E + AL + D + +A++ D L V Sbjct: 294 LVLDADAANLSS--KKLRFIEAHDLHAELKGLEEALSEAPDL--ESTAIVLPDTGLLSPV 349 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSIL-----TSLLNAIFKLNDFMAIATLVKHPLAKF 457 L R +++IS G PL+ + + +L + + L++HP K Sbjct: 350 LHILPR--RDVNISMGYPLARSSLARLLETILALQETRLERGRYHWRELIALLRHPYLKM 407 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + A+ + + L L + + P E Sbjct: 408 L--RLGAAEPLRAVFHGLEAAIRQ--GGAYVDPLALPLAGGEDDEPPSP--------EAL 455 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 LA ++ L + T + N+ G + + + +D L+ Sbjct: 456 ALAGRVLGVCLAAFDAVDTPRALGNALAGLCDLLLDPEHCGDAWERFLIDAE----CLFR 511 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 G + ++ + A ++ RL+ E + E + L +LG LE+R Sbjct: 512 LAAGIVPALTSGRLADAA----LPAPTLFALLRRLLADERAPFEAEPLTGLQVLGVLETR 567 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRH 696 LL+F L L E P +P L ++ + L + + AA++ G Sbjct: 568 LLSFKRLFLLDAVEAKLPGAPRYDPLLPDTLRRLMGLPDSRERDLVAAYNLYRLFFGAEE 627 Query: 697 LIYTRSLRENNIPTIA-----SRWLQRLLVLGGTDFFDNLKKRGQCY----LDWTRKLDY 747 + SR++++LL LK L Sbjct: 628 ITVFYRTGSPGSGLFEDKPGRSRFVEQLLWEEEKRLGRVLKPGEPPVSILRLPPCPIPAS 687 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 P + + S S + P + R + L + ++ DR Sbjct: 688 DPAVPVTGEVADRLAAYLETQKLSASFFDAYLACPLRFFYRYLSPLSPLAEVAEEGDRAA 747 Query: 808 RGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 G + H ++ + +N++ + + ++ + + L + Sbjct: 748 VGEVVHEVLRDFFTPYLNRDIDAADLDAAALADLFETRLAGHAAFAALPPDGQLLLTRTG 807 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGD 922 + L + + ++E+ G LTG ADRID + G V I DYKTG Sbjct: 808 RAKLAEAVAATPRTTILALETDLTASLETGGRTYPLTGRADRIDQREDG-VVILDYKTGR 866 Query: 923 NPKK---------------------------ETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 PK + A + QL L + Sbjct: 867 PPKGQGRFWTDDHLWDRLAADPLAADDALFEDIASRAGSVQLPLYCWL-----YHAARGE 921 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS-HLRL 1014 A+ + L+ K + + ++ + ++ +N+ +++ + S R Sbjct: 922 TPADAAVVELRDKGQERPLFGPRQ--DPETRAQAITRNVPQLLGAVLRHLANIPSFRPRP 979 Query: 1015 SEKSNIQSEYDHLAR 1029 E+ R Sbjct: 980 DNNRCPYCEFRQACR 994 >gi|260206547|ref|ZP_05774038.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289540348|gb|EFD44926.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] Length = 1055 Score = 219 bits (556), Expect = 3e-54, Method: Composition-based stats. Identities = 128/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L + W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R LV + R+ A L P Sbjct: 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +++ S + + ++ + +L ++ + Sbjct: 530 -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 580 RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639 Query: 656 KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L ++ L E+ + A + + + Sbjct: 640 NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 Query: 704 RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + S + + + L + Sbjct: 700 GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759 Query: 762 PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783 T + S ++ L + P Sbjct: 760 ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A R + + G++ H + E ++ ++ + + + H Sbjct: 820 RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898 + + +F++ + +S + ++ V + A+E I L Sbjct: 868 PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G ADR++ +G + I D KTG P + + QL++ A+ G D A Sbjct: 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L Y+ + D L+ + +V L FI+ Sbjct: 985 RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 >gi|215413075|ref|ZP_03421776.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210] gi|298526679|ref|ZP_07014088.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|298496473|gb|EFI31767.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|326902571|gb|EGE49504.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148] Length = 1055 Score = 219 bits (556), Expect = 3e-54, Method: Composition-based stats. Identities = 129/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L + W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R LV + R+ A L P Sbjct: 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +++ S + + ++ + +L ++ + Sbjct: 530 -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 580 RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639 Query: 656 KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L ++ L E+ + A + + + Sbjct: 640 NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 Query: 704 RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + S + + + L + Sbjct: 700 GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDD 759 Query: 762 PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783 T + S ++ L + P Sbjct: 760 ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A R + + G++ H + E ++ ++ + + + H Sbjct: 820 RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898 + + +F++ + +S + K+ V + A+E I L Sbjct: 868 PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRL 925 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G ADR++ +G + I D KTG P + + QL++ A+ G D A Sbjct: 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L Y+ + D L+ + +V L FI+ Sbjct: 985 RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 >gi|300691832|ref|YP_003752827.1| helicase, C_term RecB family exonuclease [Ralstonia solanacearum PSI07] gi|299078892|emb|CBJ51553.1| putative helicase, C_term RecB family exonuclease [Ralstonia solanacearum PSI07] Length = 961 Score = 219 bits (556), Expect = 3e-54, Method: Composition-based stats. Identities = 152/962 (15%), Positives = 283/962 (29%), Gaps = 108/962 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +D + + VPT I +R Sbjct: 5 AFAPGPAFLSHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAK 57 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125 +LP I +LG + DL L S + RLL + + + W + Sbjct: 58 AAGALRLLPRILTLG-----HWLLDLPPEPGLPAARSTLSRLLAVQQALKTQAWLREALG 112 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + + ++ ++ + D D ETE + AL + L+ Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETEGRHDALEAALSAALERTYAQLSE 171 Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL +I +W AS P+ ++ MR + L GP++ T A Sbjct: 172 RFLGTESRIVLTFWQLL---SGASDPIPVRLRAMRRLLDAL----CGPVVWMSPTDPEGA 224 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 ++ A + W + + LL Sbjct: 225 DLDFLTRAAGRVPVLRI---------GYDWQAREHAPAAVAPVTH-------AAFRDLL- 267 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + ++ LP + + Sbjct: 268 --------LHAWSECGTVAQQATQACAEVELP----------------------PPGLRI 297 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A +EA A L L+ ++ AL+ DR +ARRV+ L R + + G L Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 STT ++ L ++ + D A+ L+K P EL N Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDADAPSSVAPAWVAELERRVRRHN 417 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 R+ + + D L + + L+ + Sbjct: 418 VSGGWG-------RLRRLVAERGMNADAADADAGDGPPTGRLAERL-----GLLADEAAL 465 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 G+ ++ W L L + + + + + S + + + Sbjct: 466 WRRAGHATLDAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 525 Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 EW +++ L++ + + IL +R+ FD +++ G ++ P + Sbjct: 526 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 585 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718 F S ++ +L L + Q A D + ++ T P S WL+R Sbjct: 586 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 645 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L L R+ P T S + L Sbjct: 646 LQRRLAVAGTRVDVPVVLPALQTARQ---------PTDMPAPAAPALVPSTLSAAAYNSL 696 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835 PY + R+L+L + + ++ D G L H I+ ++ ++ + + L+ Sbjct: 697 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGELLHAILHRFHRQLLDTPMADPADRLALL 756 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESI 894 + + D F + + + + S+L + ++ + A+ +I Sbjct: 757 QTLTDERFGPLLAEDGHALRFYRRWQGVMTSYLAWQAAREAEGWRFEAGEVDAETSIALP 816 Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSF 949 G + L G DR+D V + DYKT K D QL Sbjct: 817 GAQALRLRGRIDRVDTHPEHGVAVLDYKTQSPIALARKAKMPFEDCQLPFYGLLDARAGA 876 Query: 950 SQ 951 Sbjct: 877 GG 878 >gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] gi|255919302|gb|ACU34813.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] Length = 1050 Score = 218 bits (555), Expect = 4e-54, Method: Composition-based stats. Identities = 129/1061 (12%), Positives = 276/1061 (26%), Gaps = 149/1061 (14%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-------TILPIIKSLG 82 + E SV + +RA + LR+ + + P+++++ Sbjct: 51 IAETAARRVHAGAAPESVLVLTANRRAAESLRAHLTALIRRTPDGELLPVVREPLVRTVH 110 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A + P RLL + R + ++ + P Sbjct: 111 SYAFAVLRARAVRDGEPPP------RLLAGPEQDAVVRELITGDVEAGARDWPER-LRPA 163 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L D++ EDL AL W+ A F + + L Sbjct: 164 LALPGFAGELRDLLLRAVERGLAPEDLVALGEGHGRDEWVAAGLFGEQYEQV--SLLASQ 221 Query: 203 NASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + + A + + + + P L+ V + + Sbjct: 222 GLAPAYDAAELVDNALLAFENDEELLSGERARVRHVYVDDAQHLDPLQHALIRAVGSAAD 281 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 L D + + PQ L++ Sbjct: 282 --EFLLFGDPDQAVFSFRGADPRLL-------VDGDSPQVVLSR---------------- 316 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 R ++ S + P + + V L +E +EA + Sbjct: 317 ------SHRLPSAVRAATAGLASRLPGASPAREVSPVGEGGTTQVRL--FASEAQEASWV 368 Query: 375 AIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSI 429 A LR + + + + ++ + ++ L G+ + + +PL+ + Sbjct: 369 ADRLRRAHLVDGVPWSRMAVVVRSATRSLPVIQRALLAAGVPVAVPGTDLPLARQPAVTP 428 Query: 430 LTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L +LL D A L+ PL L R + L + + ++ Sbjct: 429 LLALLRCAAVPGSLDEDTAAMLLSSPLGG--ADPLALRRLRRGLRRLEIAAGRDRPSGEL 486 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L ++ DR + + A + + + + + Sbjct: 487 LVEVIEDRDRLAALE-----------DAESAPARRVARLLRTARDSIRRGSSVEVVLWDL 535 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE-GKTLSSLFSKIIETGSCIKANAIEWI 606 + V + +L +T + ++ A+ +E Sbjct: 536 WQDTGLQDRWVAMSSRHGTTGMQADRDLDAVVALFETAAKYVDRLPGASPDGFADYLEAQ 595 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + +L S ++ + + G+ EG WP + L Sbjct: 596 HIVGDTLAA-----AAPVGEAVAVLTAHASAGQEWEVVAVPGVQEGTWPDLRLRGSLLGV 650 Query: 667 VMQSDL-------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 DL A + + R ++ ++R SR+L L Sbjct: 651 ERLVDLVSGVGAGASAVAPLLAEERRLLLVATSRARRVLLVSAVR--GEDAQPSRFLDEL 708 Query: 720 LVLGGTDFFDN--LKKRGQCYLDWTRKLDYTTKQPHYKRPK------------------- 758 G + +RG + +L P + Sbjct: 709 EDAGEGETERRITPPERGLVLAELVGELRRVVCDPGESEDRRDRAATQLARLAADGVPGA 768 Query: 759 --------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 E + S S ++ L P R D Sbjct: 769 HPDTWYGLAPVTTDVPLWTEEHTVSVSPSTVETLSKCPVRWVVERHGGQDPAE------L 822 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 + GTL H + E + + R ++ Sbjct: 823 ASITGTLVHALAQAAASGAGEAELKEKLDE----AWTAVDAGAPW--FSRRERMRVERML 876 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKT 920 +FL + + ++ V + + + + G DR++ + G + D KT Sbjct: 877 DAFLAWLSASRGQLTQVSVEEEISVDLPKVEGGPRLKVRGRVDRLETDRDGRPVVVDIKT 936 Query: 921 GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDK 978 P ++ AQ+ PQL++ A G F+ + + + ++ K + Sbjct: 937 AKTPVSRKDAQEH--PQLAVYQLASALGGFTHLGLATDPGGAALLYVAKENKKTGAAQLE 994 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + ++ L+ + E + + Sbjct: 995 QTPLDEQGVRVWLERVQEAAGSSVGP--GYRAEENPDCDRC 1033 >gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv] gi|15842788|ref|NP_337825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551] gi|148663061|ref|YP_001284584.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148824398|ref|YP_001289152.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|167968317|ref|ZP_02550594.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Ra] gi|253800238|ref|YP_003033239.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|254233813|ref|ZP_04927138.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C] gi|254365825|ref|ZP_04981870.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|254552299|ref|ZP_05142746.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297635849|ref|ZP_06953629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] gi|297732845|ref|ZP_06961963.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506] gi|306777524|ref|ZP_07415861.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|306786069|ref|ZP_07424391.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|306790436|ref|ZP_07428758.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|306794957|ref|ZP_07433259.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|306805002|ref|ZP_07441670.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008] gi|306969292|ref|ZP_07481953.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] gi|306973643|ref|ZP_07486304.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|307081352|ref|ZP_07490522.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] gi|313660178|ref|ZP_07817058.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475] gi|3242281|emb|CAA16669.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis H37Rv] gi|13883114|gb|AAK47639.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551] gi|124599342|gb|EAY58446.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C] gi|134151338|gb|EBA43383.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|148507213|gb|ABQ75022.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148722925|gb|ABR07550.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|253321741|gb|ACT26344.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|308214072|gb|EFO73471.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308329222|gb|EFP18073.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308333054|gb|EFP21905.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308336740|gb|EFP25591.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|308348311|gb|EFP37162.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008] gi|308353145|gb|EFP41996.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] gi|308356887|gb|EFP45738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308360887|gb|EFP49738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] gi|323718066|gb|EGB27248.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A] gi|328459973|gb|AEB05396.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] Length = 1055 Score = 218 bits (555), Expect = 4e-54, Method: Composition-based stats. Identities = 128/1077 (11%), Positives = 266/1077 (24%), Gaps = 145/1077 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L + W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R LV + R+ A L P Sbjct: 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +++ S + + ++ + +L ++ + Sbjct: 530 -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 580 RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639 Query: 656 KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L ++ L E+ + A + + + Sbjct: 640 NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 Query: 704 RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + S + + + L + Sbjct: 700 GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDD 759 Query: 762 PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783 T + S ++ L + P Sbjct: 760 ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A R + + G++ H + E ++ ++ + + + H Sbjct: 820 RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898 + + +F++ + +S + ++ V + A+E I L Sbjct: 868 PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G ADR++ +G + I D KTG P + + QL++ A+ G D A Sbjct: 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L Y+ + D L+ + +V L FI+ Sbjct: 985 RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 >gi|303248299|ref|ZP_07334561.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302490324|gb|EFL50236.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 1002 Score = 218 bits (554), Expect = 5e-54, Method: Composition-based stats. Identities = 147/1069 (13%), Positives = 299/1069 (27%), Gaps = 145/1069 (13%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG- 69 I + FF + L+ T + + P +RA + L + Sbjct: 7 IPWTEEFFGAVAERLVAATGGD-----------FRDTLVIFPLRRAARHLCDRLAAMPEL 55 Query: 70 KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 K +LP I ++GD + + + + + R+ L ++ + Sbjct: 56 PKPVLLPEITAVGDWAADVGASFMP---TPPAVLDTLDRVALLYDIVREIAAE------H 106 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + P + P A LA++++ + DL L + L Sbjct: 107 GGGDQPGAFPTDMARFFPWGLELAELMEELFRHNVPGRDLEYL-EGQVVPPAAALLARLG 165 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + E+++E ++P E + I G + A L + + Sbjct: 166 TIYARYREKMLEAGLATPGLLLALAGENAKEAAARLAGKRIFACGFAVASGAEKALFTAL 225 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 N +L D + ++ + +L Sbjct: 226 WRQGN-LEMLWHGDPALANPGARV-------------------HFACLEQKRWLGTLNAR 265 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + R D + L + E + Sbjct: 266 AGCITGGKARRARRK-------------DDPDRPTLVLGAGTANLSSKKLRFFEGHDLHA 312 Query: 370 EAISIAIALRM-SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + ++ L + +A++ D L V L R +++IS G PL+ + + Sbjct: 313 QLKALEGCLAEGQAADGLDGTAIVLPDTGLLSPVLHILPR--KDVNISMGYPLARSSLAR 370 Query: 429 IL-----TSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRGNKN 481 +L + + L++HP K ++ L +ALE +G Sbjct: 371 LLETILTLQETRLDAGRYHWRELVALIRHPYLKMLHTGDDEPLRAVFHALEAALRQGG-- 428 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + V + P + + C L T T Sbjct: 429 --------AFVDPLTLEFGDEEAPPPE----------------EALALCREVLGTCLTAF 464 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF--SKIIETGSCIK 599 ++ + L L E L++ + + Sbjct: 465 EDVDTPRALGNAVGGLCELLLAPARCGDAWERFLIDAECLFRLATNVVPALTGGRLADAV 524 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ RL+ E + E + L +LG LE+RLL+F + + E P Sbjct: 525 LPRETLFALLRRLLADERAPFEAEPLTGLQVLGVLETRLLSFRRVFVLDAVEDKLPGAAP 584 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-----IAS 713 P L ++ L L + + AA++ G + + + S Sbjct: 585 YEPLLPDPLRRLLKLPDSRERDLVAAYNIYRLFFGAEEITVFYRTGSSGTGLFEDKPVRS 644 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYL----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 R++++LL L + P + Sbjct: 645 RFVEQLLWEEEKRLGRVLLPGEAPVSLVSVPLCPIPEGDAAMPKSPAVAERLGAYLGEKR 704 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S + + + P + R + L + ++ DR G + H+ + E + ++ Sbjct: 705 LSATFLDTYLTCPLRFFYRYLTPLTPLAEVAEEGDRAAVGQVVHDTLKEFFTPYLGRDID 764 Query: 830 EINHLMKQIIDSHFEKENLPPHIDII---WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + + D + + P + + R L + + L + + Sbjct: 765 AADIDAAALADLFETRLRVHPAYEALPPDGRLLLLRAGRTRLAAMAAGLPRTTPVALETE 824 Query: 887 AKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---------------- 928 +IE G L G DR+D + G + I DYKTG P Sbjct: 825 LAASIETAGRGFLLGGRLDRVDRREDG-IVILDYKTGGLPALTQSLWDDEALWGRLSRFT 883 Query: 929 ------------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 A+++ QL L A A+ ++ LK+ + + Sbjct: 884 APDDDPELLETVARRVGSLQLPLYCWLYAAS-----QGETPADAAFVELKETGREKPLFG 938 Query: 977 DKKKYSA-DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 ++ SA +E L+ V + F R ++ ++ Sbjct: 939 PRRDQSAREEAITGQTPALLAFVLRHLSMATRF--SPRPDDRRCAYCDF 985 >gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rhodococcus opacus B4] gi|226244336|dbj|BAH54684.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4] Length = 1108 Score = 218 bits (554), Expect = 5e-54, Method: Composition-based stats. Identities = 135/1044 (12%), Positives = 269/1044 (25%), Gaps = 127/1044 (12%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82 LV+ SV + +KRA +R E G ++T P+++++ Sbjct: 74 LVDVAVDRIAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVH 133 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 N P RL+ A + R L I D P Sbjct: 134 SYAFAVLRLQAAAHGNPPP------RLITGAEQDAVLREMLQGDIADGGEMWPER-LRPA 186 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L D++ EDL L W+ A F Sbjct: 187 LPLGGFAVELRDLMLRSSERGLGPEDLIELGRRHDRTEWVAAGMFAARYEH--------- 237 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + EA + G+ + AT + +++ Sbjct: 238 -----GMLLRGAVGVEAPEATAPALDAAELIGAALTAFATDPDLLRAERDRVRHLLVDDA 292 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 P A + T+ Y D V + Sbjct: 293 QHLDPQAAELVRLVGTGTRTTVVAGDPDQSIYGFRGADPTFLAHLADKGDPRQVLLPVNF 352 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 RS + TS + P + ++ +EA IA LR + Sbjct: 353 RSSADVATTAARITSRLPGHLPHRIWTPAQDGGRTSARVLGTA--AKEAALIADTLRRAH 410 Query: 383 DENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAI 437 + + + ++ + ++ L G+ + +A PL+ S L +L A+ Sbjct: 411 LLDGVPWSEMAVIVRSVPRALAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRAL 470 Query: 438 -FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L+ P+ + L D S L R+ Sbjct: 471 SGQEFTGEDALALLAGPVGG--------AEPVALRRLRRGLRRAELASGGDRDSAELLRL 522 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 ++L++ + ++ + + PL + ++ + + Sbjct: 523 LLVGETGSTRRVTAKLTDVEAASLNRVLSVLRKARVPLERGRGIEDVLWAAWQATGLERR 582 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + +L ++ + + +A ++D +T Sbjct: 583 WSAASARGGPIGAQADRDLDAVVALFDAAASYVDRLP-----RAQLAGFVDYLTGQAIPT 637 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + +L + +D + + G+ EG+WP A+ L DL Sbjct: 638 ARTVSVVPRDAVSVLSAHAAAGREWDVVAVAGVQEGLWPSLRARGSLLGTEALIDLTSGV 697 Query: 674 -----------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL- 719 +TA + + R + ++ + + SR++ L Sbjct: 698 SDGSETAADRMSRTAPLLAEERRLFLVACSRARRSLLVTAVDSASGDADLVHSRFVDELL 757 Query: 720 ------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----- 768 + R +L P P A + Sbjct: 758 AGEQDSDAEEAALPAVDPATRVLALPALVAELRSVVCDPDVADSDPARQERAARQLARLA 817 Query: 769 --------------------------------TYSFSEIKQLINDPYAVYARRILKLDFI 796 + S S + L P R Sbjct: 818 EAGVRGAHPDQWYGTAEPSTGVALWNAEDGPVSLSPSTVDLLNTCPLRWLLERHGG---- 873 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D GTL H L++ + + + + + + Sbjct: 874 --RDGDNTHAIAGTLVH----TLVQALAGRIPADQVERALENAWESIDLGSQWYSRRELD 927 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSG 911 R + +F +S + ++ V + +E I L G DR++ G Sbjct: 928 RTR--DMLATFTAWLGNTRSELTEVGVEVAVDGVLEPREEGSPTIRLRGRIDRLERDAEG 985 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 I D KT +P + + QL+ A G+ K + + + + Sbjct: 986 RPVIVDVKTARSPVTKDNAQQHA-QLAAYQVAAAIGAIDGEPASKPGGARLVFVAKPHQK 1044 Query: 972 DCITNDKKKYSADELSEKSLKNLI 995 + T + ++E E L + Sbjct: 1045 EGATQRVQAPLSEEALESWLAVIH 1068 >gi|254495648|ref|ZP_05108570.1| endonuclease [Legionella drancourtii LLAP12] gi|254355218|gb|EET13831.1| endonuclease [Legionella drancourtii LLAP12] Length = 842 Score = 218 bits (554), Expect = 5e-54, Method: Composition-based stats. Identities = 96/701 (13%), Positives = 212/701 (30%), Gaps = 100/701 (14%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK-LELTRFGIN--IDIS 416 ++ A + +EE + L++ LDE ++ ++ D L + +IS Sbjct: 210 KVLAAQDAQEEYQQLMAWLQVKLDEGNQRIGVVVPDLQQKSPTLQRTLAQHFDPALFNIS 269 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G LS + LN +L + A L++ P E Sbjct: 270 LGQTLSEFPLVAHALCWLNLDTQLLNHHQAALLLQSPYLGGAQEEFLARS------EYLQ 323 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 G + + + D A L Sbjct: 324 DGTLLENQHLPFTTFISDLEANTPK--------------------------------LAA 351 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + + S+ +W L ++ L + ++ + + Sbjct: 352 LLKHISPYPKEASVHEWIDYFQERLNSLGFPGDYGLNSENYQCFNRFTLLFDELRQLSLL 411 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + N E ++ + +L+ T+ + ++ + I G LE+ FD+L + GL + P+ Sbjct: 412 SARLNKAEALEAL-QLLTQNTIFQAQKTTAIVQISGLLEASGCEFDSLWVMGLTDQCLPQ 470 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 + F+ +Q +L + + + A + ++++ + + + P + Sbjct: 471 KVHLSAFIPPQLQRELLMPHSLPARELQFAQQTLKRLQSSAESVVFSYAKLQADNPNLPC 530 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + T + Sbjct: 531 SLITNHPHFELLPSSNQTPG--------------CDELSALEEHYTVPIQSEEHITGGTA 576 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKN 827 + P+ +A L+ D +RG + H ++ L + N + Sbjct: 577 ILANQAKCPFKAFAEHRLRAKAASQTTDGLDAKERGQIIHKVMELLWQTLESQQALFNLD 636 Query: 828 TPEINHLMKQIIDSHFE------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 ++ ++Q I S E+ I + ++ + LE E++ S Sbjct: 637 EHQLEQHIEQAIQSALAPLKEQHPESFSAFIQEVEYIRLKRLVCACLEWEKQR-SPFTIA 695 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLE 940 + + + + + DR+D + + DYK+ K ++ +PQL L Sbjct: 696 ALEQSYTINLAGLDFRV--RVDRLDQVADKKW-VIDYKSSLPSSKPWNEERPKEPQLLLY 752 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELSEK 989 A +++ L +++LK I I + KK+ D + Sbjct: 753 ALL----------DKQINTLLFMQLKTGKISCSGFSEEKQGISGIGSLKKEEQWDNCRDN 802 Query: 990 SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + L + Q G P Q +Y +L R Sbjct: 803 WHQQLTRLAEEFQQGHCP---PQPAQLTLCQQCDYQNLCRF 840 >gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97] gi|121639087|ref|YP_979311.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215432161|ref|ZP_03430080.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054] gi|219559254|ref|ZP_03538330.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17] gi|224991579|ref|YP_002646268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|260202355|ref|ZP_05769846.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289444773|ref|ZP_06434517.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289571424|ref|ZP_06451651.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17] gi|289755321|ref|ZP_06514699.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054] gi|31619975|emb|CAD95319.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97] gi|121494735|emb|CAL73216.1| Possible ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774694|dbj|BAH27500.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|289417692|gb|EFD14932.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289545178|gb|EFD48826.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17] gi|289695908|gb|EFD63337.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054] Length = 1055 Score = 217 bits (553), Expect = 6e-54, Method: Composition-based stats. Identities = 128/1077 (11%), Positives = 264/1077 (24%), Gaps = 145/1077 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L + W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R LV + R+ A L P Sbjct: 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +++ S + + ++ + +L ++ + Sbjct: 530 -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 580 RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639 Query: 656 KNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L L E+ + A + + + Sbjct: 640 NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 Query: 704 RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + S + + + L + Sbjct: 700 GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759 Query: 762 PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783 T + S ++ L + P Sbjct: 760 ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A R + + G++ H + E ++ ++ + + + H Sbjct: 820 RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898 + + +F++ + +S + ++ V + A+E I L Sbjct: 868 PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G ADR++ +G + I D KTG P + + QL++ A+ G D A Sbjct: 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L Y+ + D L+ + +V L FI+ Sbjct: 985 RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 >gi|67459016|ref|YP_246640.1| hypothetical protein RF_0624 [Rickettsia felis URRWXCal2] gi|75536548|sp|Q4ULU8|Y624_RICFE RecName: Full=Uncharacterized protein RF_0624 gi|67004549|gb|AAY61475.1| unknown [Rickettsia felis URRWXCal2] Length = 856 Score = 217 bits (553), Expect = 6e-54, Method: Composition-based stats. Identities = 134/717 (18%), Positives = 251/717 (35%), Gaps = 113/717 (15%) Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 ++ E ++ EEA++IA K+ A+IT + L R L R+ + Sbjct: 209 DGISYYEPNDIYEEAVAIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDRYEDLL--- 262 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G L T +LTS++ + D + L+K+PL A LE++ Sbjct: 263 -GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCS--------ATQKLEVMLS 313 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 N+ L L +E+ KE L+D + Sbjct: 314 NKNRFISSPKYLLQL------------------QFDNEDTKEYCRNLIDILF-------- 347 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T +I D LT + + P +W +E G L + + Sbjct: 348 -------TDNPHNILDILTLTKEIAEKLL-------PTIWEKEGGAELVEFLTNLTAYSK 393 Query: 597 -CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + ++ I + L+ K S+ + I + L FD +IL N W Sbjct: 394 YINSMDKKDFPKIFSFLLSNIKYY-KNTDSANIIIAPPEDLALCTFDLIILPHFNNENWT 452 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 +P+LS+ LN+ E + F + + +I + + + ++ S Sbjct: 453 PTAKSHPWLSKKALQILNIDYNETASTLYSDYFNLFLQNKQVIILNAKKYDGKLSVPSNL 512 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----YS 771 +L + + + G +D ++ A + S Sbjct: 513 FLKLQDVIPAVHYVIPAEAGIHL-----DMDSRRCWNDIRKDDIGDESTAHSHSFPSVLS 567 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRINKN 827 ++I+ LI +PY YA++IL L + ++P +D G H ++ E K + IN N Sbjct: 568 VTDIETLIRNPYGFYAKKILGLRKKDNIWEEPKISDFGNFIHKVLEEYSKNYDKQFINLN 627 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 628 LLDKQNALINIGNHILYGTILPNYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFETKG 687 Query: 888 KMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 ++ I I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ L Sbjct: 688 ELRLNIAGQDIKIIGIADRIEISKSNHITILDYKTGTIPTKKEIELGLSPQLIIESLMLL 747 Query: 946 AGSF------------------SQIDCRKVAN---------------LFYIRLKQKFKID 972 F + + Y+++ + Sbjct: 748 ENGFNIKNENTIVNSVGLGYKARGATPIIIGETTSNDVGKPKSIDYTIAYVKITS---TE 804 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + + E K LI+++ + F L LS+ ++Y HL+R Sbjct: 805 PYVQTTEIALSIETLNKHKAGLIKLLEYYVT-NKSFSYDLNLSK----YNDYLHLSR 856 Score = 66.5 bits (160), Expect = 3e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 46/218 (21%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ V I +P + EL+ + K LP Sbjct: 7 FLKSFAEYIIDKL------------EKGTEVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D VS I+ LL ++++I +++ + + L Sbjct: 52 IIIPFNSLISKKTDSDY---------VSKIEELLIISKIITEYKDLQFNKNESLKA---- 98 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 A+ L +I+ + + ++ +W FL+ W Sbjct: 99 ------------AEILRKLINDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 E + + +++ L++ E + II+ G Sbjct: 144 EEISLTQKQTKAIHKLKLLQEEIIRIKN---KQIILVG 178 >gi|260188245|ref|ZP_05765719.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289421843|gb|EFD19044.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] Length = 1055 Score = 217 bits (553), Expect = 7e-54, Method: Composition-based stats. Identities = 128/1077 (11%), Positives = 265/1077 (24%), Gaps = 145/1077 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRPGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRT------L 471 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R LV + R+ A L P Sbjct: 472 QRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-- 529 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +++ S + + ++ + +L ++ + Sbjct: 530 -----RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYV-----S 579 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 580 RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 639 Query: 656 KNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L ++ L E+ + A + + + Sbjct: 640 NTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAG 699 Query: 704 RENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + S + + + L + Sbjct: 700 GGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDD 759 Query: 762 PLEAQP--------------------------------------RTYSFSEIKQLINDPY 783 T + S ++ L + P Sbjct: 760 ADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPL 819 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A R + + G++ H + E ++ ++ + + + H Sbjct: 820 RWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHL 867 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHL 898 + + +F++ + +S + ++ V + A+E I L Sbjct: 868 PFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRL 925 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G ADR++ +G + I D KTG P + + QL++ A+ G D A Sbjct: 926 RGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGA 984 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L Y+ + D L+ + +V L FI+ Sbjct: 985 RLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 1034 >gi|313837605|gb|EFS75319.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2] gi|314972544|gb|EFT16641.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3] Length = 1069 Score = 217 bits (553), Expect = 7e-54, Method: Composition-based stats. Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L+ V + T+ + Q LR+ + + + P + ++ + Sbjct: 50 LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 95 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S +RLL R L +P+ + A A ++ + + E Sbjct: 96 SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 151 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 +DL W + FL A + +IAL R A+ + Sbjct: 152 CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 211 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +I + R +S +A ++ D + + Sbjct: 212 RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 263 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 +L + +D + + + +S + ++ Sbjct: 264 --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 309 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400 + + VA + A + IA LR + + + A++T Sbjct: 310 LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 369 Query: 401 RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454 + L I + S + T + L + +ATL+ +PL Sbjct: 370 IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 429 Query: 455 AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496 A + L N ++ V R Sbjct: 430 AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 489 Query: 497 ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 H + + ++V + + L + + + S Sbjct: 490 EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 549 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 WT + R L L + + + I I+ Sbjct: 550 WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 602 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I + + E + ++ + FD + + GL EG WP + + S Sbjct: 603 IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 662 Query: 673 NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725 +L A E + + R + ++ S + L + Sbjct: 663 SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 722 Query: 726 --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757 ++ Q LD R + P Sbjct: 723 LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 782 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P A S S I +L+ P + R F+ G+L H I Sbjct: 783 APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 837 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876 E + ++ + + ++ F + Sbjct: 838 ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 890 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 + V + + + S + G DR++ G + D KTG + +ET + Q Sbjct: 891 QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 949 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + + A + +G I + V+ + L+ ++ S Sbjct: 950 IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 995 >gi|126179445|ref|YP_001047410.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus marisnigri JR1] gi|125862239|gb|ABN57428.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus marisnigri JR1] Length = 1049 Score = 217 bits (553), Expect = 7e-54, Method: Composition-based stats. Identities = 142/1037 (13%), Positives = 272/1037 (26%), Gaps = 158/1037 (15%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L+ + E + +P VPT +E+ E + + +L Sbjct: 15 LDAFIAEFRKAAARDPFG---TVFIVPTSHLAREIVRRLGEE--GVPVVADAVTTLPGFA 69 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + F +S + L LAR++ R L Sbjct: 70 RKVFLDYATSET----LISGAESRLVLARILAAGRYPLLCTGAV---------------- 109 Query: 146 IWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 +LA + D+I + L L K + + L E + Sbjct: 110 ----DDLATLFDVILMRKVDYPAALGDLATAKSIE--------IARLFDAYRRFLDEHDL 157 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 +R A+ G + I G G +P R + P + + GL Sbjct: 158 VDESTLFARTVRLLAD---TGWFRTVYIYGLFGPMP---RAGGSHYARPPRTVFVYGLFE 211 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 +P + ++ S + Y+ + D + + + RS Sbjct: 212 PMPLE-----RDLLFSLRESAEEFHYSIPYTGNPAIFTDDGEWLHPDAVISGDAPDTRRS 266 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SL 382 + + C V L E + E +IA +R + Sbjct: 267 RLAALFSR-----------------SEPVDCCGFVRLAERRDREGEVRAIAQEIRDLVAA 309 Query: 383 DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + A+ D A E FG+ S G LS + L + + Sbjct: 310 GVRPDEIAVAFPDFASALPYVEEVFPDFGVPYAASDGRALSASPLVRALLDVAMVPARGY 369 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + L P F L++ + + + + + + ++ Sbjct: 370 RREDVVALATSPYLPFTGGC--------ELDIFSREARITAGNWDERLAALARAAGEERG 421 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 P E + + L + K + + Sbjct: 422 RPDTPESAKSRLAEKVAAIESARKTVRELFADLSALEATKTLAGHIAAYRSVLERWQAPA 481 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 D + + ++ K + E+ ++ ++ G + Sbjct: 482 MPEDGDPDLLEDEARNLGGFSGILAALERLARLLPDEKMSLAEFSSLLAQVAAGTRTGRR 541 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L L +GGL EG P+ T + PF + L ++ E + Sbjct: 542 RSNGGVRVVGVREVAH-LAVPYLFVGGLVEGTMPRLTTRLPFTTDAETRRLGTRSREDIL 600 Query: 682 GQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + + F A + + E P + S ++ + + + + Sbjct: 601 REERYYFTAALLSARTRVYLSYPAAEGATPLVHSGFVDAVREAFSPETWGSNDFPDSGLA 660 Query: 740 DWTRKLDYTTKQP-HYKRPKPFPPLEAQPR------------------------------ 768 R + P P P EA R Sbjct: 661 AARRAGALLARGEFPVGMPCPIPVREAVRRLNIENYHRKAGYDSPYDGMLDDDPAILAAL 720 Query: 769 --------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 +S + ++ + P+ Y R+L L +P D +RG+L H I Sbjct: 721 AERFGEGAVFSPTALETYADCPFRFYLERVLGLAPLPEADPDLTAQERGSLVHRIAYRFY 780 Query: 821 KKRINKNT--------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISH 865 + + ++ + + Sbjct: 781 SGWTCDGNGPVTGACYADALRRILDAGREEADRFTFETPAWAADKEHLLGSPAAGKGVLE 840 Query: 866 SFLEHEEK-IQSSIEKIFVNIPAK------------------MAIESIGIHLTGFADRID 906 FL HE + S + + + I L G DR+D Sbjct: 841 RFLRHEAEVAASRFVPHAFEVSFGLPLVPGEVDAVSIPDAVAIPLGEETIRLRGRVDRVD 900 Query: 907 LLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 +L G ITDYKTG + P+ + QL L A++ + VA +YI Sbjct: 901 VLTDGRFMITDYKTGSSHPRLRDIEAGKALQLPLYLRAVE----TLTGREGVAGTYYILR 956 Query: 966 KQKFKIDCITNDKKKYS 982 + + + D Sbjct: 957 RGEVTNKPVFWDAGLKD 973 >gi|255534060|ref|YP_003094432.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366] gi|255347044|gb|ACU06370.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366] Length = 951 Score = 217 bits (551), Expect = 9e-54, Method: Composition-based stats. Identities = 132/1058 (12%), Positives = 285/1058 (26%), Gaps = 195/1058 (18%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF +E+ L+ L I KR L+ ++ KK Sbjct: 3 PFLQEVAADLVARFG-----------DGLQHCAIIFNNKRPAAYLQKHLADLI-KKPFFS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P ++ + + + Y + L ++ + P Sbjct: 51 PSFFTVQEFFAKWTNYRIADFY---------IQFFTLHKIYNQLLKEEGMESISGNKFFP 101 Query: 136 LSLPISPANA-----IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LL 183 L+ I A + A + ++ I K ++ L + + +W Sbjct: 102 LAKIILADFAQIDIDLVDADKIYRDLEDISVINKDFDYLSPEQYQYLSQFWTSYSEGKHK 161 Query: 184 AADFLKI--------ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 L I + L E + G Sbjct: 162 RQQELFIKMWRRMPKLYHQFHTALKEQGFVTNGAVYR---------------------GL 200 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 + G I+ G + Sbjct: 201 AEGNAGEQNFIK---GFDKGKIIFAGFNALSNAE-------------------------- 231 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 AK+ L + + S + + + ++ EN I+ Sbjct: 232 -AKVFVNLQKAGKALFYFDADSYYLDDPLQEAGLFLR-KNIYQLGIKNVFENNPSLIRTE 289 Query: 356 FSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLELTRFGI-- 411 V + + +A + L+ + + + ++ AD +L + Sbjct: 290 KHCVDVYSVQGQTAQAKILNNILKEDYANEAESQSVVVVLADESLLIPTLQTIPTNHNGR 349 Query: 412 --NIDISAGIPLSTTLHSSILTSLLNAIFK-----LNDFMAIATLVKHPLAKFGFPEKYL 464 ++++ G L+ + ++ + + + + HPL + Sbjct: 350 ELELNVTMGFALAASGVYGLIDLWSGCQLEIQQTGRLSYKNVEAFLTHPLTGLRQAMRDK 409 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 E + L + ++ E+ L+ Sbjct: 410 INTALLAEKEIEVPYTRLVNQKGLFEVFFKKLLHAG-----------------EVMEQLL 452 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + L K ++ + L + + + + Sbjct: 453 EVMNFVLARLSHAGNLKKID------AELFAKAIQELNRLYDTFGKHVDHEE-------- 498 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 I ++ + + G V + + ++G LE+R LNFD + Sbjct: 499 -----------------IPFIISLVQKAVMGLAVPLSGDPLKGIQVMGLLETRNLNFDKV 541 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-S 702 ++ G NEG+ PK++ N F+ ++ L E +A+ + + S Sbjct: 542 VMLGFNEGIVPKSSVGNSFIPDSIRRVYGLPVLENQDAISAYMVYRLIQRASDVSFVYNS 601 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 L ++ SR L++L G +F + ++ Sbjct: 602 LTDDATSGEPSRILKQLAYESGFEFNYHTLDLNVRTEPLKEITIKKEGNEAIQQG--LQR 659 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK- 821 + +T S S + Q I +P + I + + + G++ H ++ K Sbjct: 660 YLNKQKTLSPSALTQYILNPIDFFFNYIAGIKEPKEISAVVEANEVGSILHKVMEYFYKD 719 Query: 822 ----KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-------H 870 + E + + F K+ + +E Sbjct: 720 CIRQEITLPLLKEKRKKIPALTQKAFAAVIFNNPEKQAEFKGMQKVILAIVEAYVNIIVS 779 Query: 871 EEKIQSSIEKIFVN--IPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGD-N 923 +++ Q+ + + A ++ G I + G DR+D LK G I DYKTG Sbjct: 780 QDERQTPFMIESLEQWVEADISFPLGGRAASIRIGGIIDRVD-LKDGITRIIDYKTGSDK 838 Query: 924 PKKETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 + +L + Q L + FS + Y+ + Sbjct: 839 LNYKDIPELFNTDGKHINKALIQTLLYTYIYEQ--FSGKTAVEPN--LYVVKTMSQEGVW 894 Query: 974 ITNDKKKYS---ADELSEKSLKNLIEIVTLLQNGEQPF 1008 + ++ S +E+ + L L E +T L E P+ Sbjct: 895 FKSGRQSLSGSYLEEVKPEFLSALKEKLTELF--EAPY 930 >gi|305665913|ref|YP_003862200.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170] gi|88710688|gb|EAR02920.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170] Length = 916 Score = 217 bits (551), Expect = 1e-53, Method: Composition-based stats. Identities = 129/1007 (12%), Positives = 297/1007 (29%), Gaps = 160/1007 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 +P+KRA LR+ +IT + P I S+ + + +N Sbjct: 21 DTIFILPSKRAGTFLRNSLAKITSN-TIFSPEIFSIEEFIGNISGLSTA---------TN 70 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++L EL L P+ D + L I+ I+ Sbjct: 71 TRQLFELYYAYLEQNKGNPEHFLDFS---------------KWGQTLLQDINEIDRYLID 115 Query: 166 WEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 + L L + W + + + L + + Sbjct: 116 VDGLFSNLSAIQEINHW-------------YLASEKTKMVEDYIKFWNNLHQLYIAFNER 162 Query: 225 GTKGPIIIAGSTGS--IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I G G A ++ + + + + + G +N + +N Sbjct: 163 LLQKKI---GHQGLIYRKAHEKVETYLEANKSTQHIFIG---------FNALNTSESN-- 208 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 ++ + + + + Sbjct: 209 ----------------IIQRILETKNAQIYWDADTYYLNDPIHDAGYFIRDHKKKWPYLQ 252 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLA 399 + I ++ + + + LR +EN A++ +D L Sbjct: 253 NNTLKGISTTFLQEKNIQIAGVPKNVSQVKFVGSLLRTLNNENSDTLKRTAIVLSDEALL 312 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKHPLA 455 + + ++I+ G PL+ + + N + + + Sbjct: 313 NPLLNAIPSEIEKVNITMGYPLNKSPFDNFFNQFFNLYITKQNNGWYYKNVLNFLSDANT 372 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 ++ +L ++ L + +++ +A N T + Sbjct: 373 HLLLDDQD------ENMPESLISGIKLNNLTFLNNNIINSLAKNPNKTLTQLF------- 419 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 E I C+ + KT ++ L++ + + Sbjct: 420 -FEQIPSPNQFIEHCLQIISILKTKLQASENKLALEELFR-------------------- 458 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 ++ + ++I ++ + L+ E + K + L ++G LE Sbjct: 459 -----FYSVFNQMQQLI-KEHDFISDLKSLQALFVELLSMENLDFKGDPLEGLQLMGMLE 512 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L+F+T+I+ +NEG+ P + N F+ ++ L T ++ + F Sbjct: 513 SRNLDFETVIITSVNEGIIPSGKSNNSFVPLDLKRAFGLPTFKEKDAVYTYHFYRLLQRA 572 Query: 695 RHLIYTRSLRENNIP-TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 +++ + + + SR + +L + + +++ + Sbjct: 573 KNVYLVYNTEPDVLEGGERSRLITQL---LTDTNIKDNITEFIAVPEIKVEINKENQITK 629 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 E + +S S + I +P Y + +L ++ + ++ GT+ H Sbjct: 630 DA-SLVNLIKELATKGFSPSSLSNYIRNPMDFYKQNLLGINDLMEVEETVAANTFGTIIH 688 Query: 814 NIITELIKKRINK-----NTPEINHLMKQIIDSHFEK----ENLPPHIDIIWRHLFHKIS 864 + + +L K I + + + ++ HF K N ++I ++ K Sbjct: 689 DTLEDLYKPFIGRYLNKEVLKGMKANITALVKKHFAKTYSNLNTIQGKNLIAYNVIIKYV 748 Query: 865 HSFLEHEEK--IQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDY 918 +F++ E K S I+ + + ++ + + L G DRID K G + I DY Sbjct: 749 ENFIDLEIKQCQDSQIKILGLEEKMEITMNMPELGFPVKLKGKLDRIDE-KDGVLRILDY 807 Query: 919 KTGDNPKKETAQKL------------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 K+G + QL A + ++ + + + L Sbjct: 808 KSGKVM-LNQVEIFDWSLITEDFKFSKAFQLLCYALMFNDKA--PLNQLEAGIVSFKNLN 864 Query: 967 QKFKIDCITNDKKKYSAD-----ELSEKSLKNLIEIVTLLQNGEQPF 1008 + S D E + L ++ + + PF Sbjct: 865 AGTLSFATKEKRNSRSKDKTITTETLKTFSTELKRLIIEICDPNIPF 911 >gi|30250112|ref|NP_842182.1| hypothetical protein NE2178 [Nitrosomonas europaea ATCC 19718] gi|30139219|emb|CAD86089.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 909 Score = 217 bits (551), Expect = 1e-53, Method: Composition-based stats. Identities = 111/730 (15%), Positives = 239/730 (32%), Gaps = 86/730 (11%) Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVK------- 403 + + + + R+E A +R L+EN + AL+ + R + Sbjct: 223 LSGQPDRIGKLACADGRDEIRQAARWIRQRLEENPAARIALVVPELAAQREMICQTLDEV 282 Query: 404 ---LELTRFGIN----IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 L + ++S G PL S+ +L + + ++ +++ Sbjct: 283 LIPQALQPEHHDRVRSYNLSLGKPLDRYPPVSLALDVLGLSETVIELPHVSRVLRSSFIA 342 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G E +A L+ + QK T+ S Sbjct: 343 GGDREMNARALLDAR----------------LRESGEWNLTLQKLLTNAARSGQPYSCPL 386 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + S +W + L+ + R L + Sbjct: 387 LAEC-------------LSNLMKQVKVSLAPTSPGEWAQRFGQWLKAIGWPGERGLSSEE 433 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 ++ L + E + + ++ G +P+ ++ + +LG E+ Sbjct: 434 YQVIQAWQGVLREFSTLDWVIRSVSLTEALQQLRHMVAGTIFQPESAEAP-VQVLGLFET 492 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEM-ANG 693 L FD L + GL++GV+P ++ NPFL +Q +++ +A + + AA + Sbjct: 493 SGLQFDYLWIMGLHDGVFPASSRPNPFLPLTLQREVDAPHSSARRELRVAAALLQRITTN 552 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 ++ + R+ + +S + L + + + +R+ + Sbjct: 553 ATEVVISYPQRKGDEILDSSPLIDAFPALSEEMLAMGTQSAWRDSVYHSRQQE------- 605 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 P K P+ +A L + + + RGTL H Sbjct: 606 VLSEDVAPTFVGTGIPGGSKLFKLQAACPFRAFAELRLVARPLGRIQIGLNALVRGTLLH 665 Query: 814 NIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFH 861 ++ + + N + E+N L+ ++ + + + H Sbjct: 666 RVMEMVWAELDSLAALANLSPGELNALVAGKVNEAIYEIAPRYPHTFGERLQALESKRLH 725 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 + ++LE E++ + ++ + + I+L DRID L+ G + DYKTG Sbjct: 726 ALVLAWLEMEKQR-PPFRVSGREMETELELNGLRINL--RIDRIDTLEEGGELLIDYKTG 782 Query: 922 DNP-KKETAQKLIDPQLSLEAAA-----LKAGSFSQIDCRKVA----NLFYIRLKQKFKI 971 + + +PQL L + A L +F++I +A + + Sbjct: 783 EVKASAWFGDRPDEPQLPLYSLAFTDDGLAGIAFARIRAGDIAFEGVASEEVSILGIKSF 842 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS--NIQSEYDHLAR 1029 + + + ++ S DE+ + + ++V GE + + + E L R Sbjct: 843 ENLRHTREAASWDEVLAGWRQTIEQLVQDFMAGE----ARVSPKQYPQTCTYCELKPLCR 898 Query: 1030 VAEWREEYDI 1039 + E E D Sbjct: 899 IGESLEAVDD 908 >gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus] Length = 1058 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 132/1037 (12%), Positives = 266/1037 (25%), Gaps = 122/1037 (11%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI----EITGKKSTILPIIKSLGDVV 85 LV+ + ASV + + RA ELR+ E + P+++++ Sbjct: 41 LVDIVAAHTAAGVNPASVLVLTGSNRASAELRNRISAAVFERCAGVAIREPMVRTVHSYA 100 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 A N P RL+ A I R L +D P SL + A A Sbjct: 101 FAVLAAHAACQGNPPP------RLITAAEQDSIVRELLCGNAEDNSGSWPASLRPALATA 154 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 A + D++ +L A+ W+ A + + Sbjct: 155 -GFATGVRDLMARCTERGVDARELRAIGRRHNRPEWIAVAGLAREYEE------------ 201 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 V + + A G + GS A M +++ Sbjct: 202 --VMLLRSAVGMAAPQATVPALGAAELVGSALETFAVEPGMLAAERDRIELLLVDDAQHL 259 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 P A + L D + + Sbjct: 260 DPQAALLVRLLAERAGFCVIAGDPNQTVFGFRGADTQLLQVSADSR--TTMIELDGSHRC 317 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + L + I ++ + V L E EA + LR S + Sbjct: 318 AAPIAELANSVARRLPGSSPARVIHGVENGPAAVRLAAVPTETAEASLVVDLLRRSHLID 377 Query: 386 K----KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKL 440 + + ++ + + L G+ + S P+++ L ++A Sbjct: 378 GVPWSRMAVIVRSVPRSGAALCRALQSAGVPVHAESYDGPVASVPAVHALLLAVSAAQGG 437 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 TL PL + L R + L L++++++ T Sbjct: 438 VTHEDAVTLATGPLGRV--DPVALRRLRRQLLRAEEAAGGERGSAELLRAVLVEADETHL 495 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 ++ + I + + + + S + Sbjct: 496 AAL---------TDIQAAPLRRVRAVIGAAREATASGASVLDVLWAAWTRSGLQRRWDGL 546 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 Q + +L + +L L S+ + I + L+ T + Sbjct: 547 SQRGGPLGAQADRDL---DAVSSLFDLASEHVARTPGIGVTGLIDHIRSLALVGQRTTRL 603 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK----------NPFLSRVMQS 670 + + I+ + +D + + G+ EG+WP + + + Sbjct: 604 EP---DAVAIVSAHAAVGREWDVVAIPGVQEGLWPNTAVRGGVLRTQELMDVLAGIEHAA 660 Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTD 726 ++ + + R ++ T E P +ASR+L L+ Sbjct: 661 HVDGSAVALAEERRLLLLAVGRAARRVLITAVENENADMGGGPAMASRFLTELMAAHPEW 720 Query: 727 FFDNLKK-----RGQCYLDWTRKLDYTTKQP----------------------------- 752 + R + +L P Sbjct: 721 VISEYRPGAAQSRVLTAANLVGELRAVVTAPVEAVTDARRRAAARQLARLAAAGVPGADP 780 Query: 753 -------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 +P E P S S ++ L+ P R D Sbjct: 781 ESWYGLGDVSDERPLWLAEDGPVRVSPSNVETLMACPLRWMLERHGGTDLTDPR------ 834 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 GTL H ++ + + E+ + H++ Sbjct: 835 RALGTLVHELVGVHAED------SDAMCRALDKAWESMPFESQWYARN--ELRRHHELLE 886 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGD 922 +F + + ++ I + G + L G DR++ G + D KTG Sbjct: 887 AFTTWRASTRGELTEVGREIGVDGVLSRAGQPQVRLVGRIDRLERDAEGRPVVIDIKTGK 946 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 +P + + QL+ A G + + + D T + Sbjct: 947 SPATKDDAQQHA-QLAAYQVAAAEGLIEGEPAGAPGGGRLVYIAKPNLDDGATQRHQDPL 1005 Query: 983 ADELSEKSLKNLIEIVT 999 + +++ Sbjct: 1006 TPAAQDAWRESIHNAAA 1022 >gi|314927514|gb|EFS91345.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1] Length = 1066 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 127/1006 (12%), Positives = 261/1006 (25%), Gaps = 127/1006 (12%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L+ V + T+ + Q LR+ + + + P + ++ + Sbjct: 47 LSDVLVLAQTRPSAQALRTALVRRLAG-AHLEPQVMTVHALARRIVA------------- 92 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S +RLL R L +P+ + A A ++ + + E Sbjct: 93 SPSRRLLTAPEQEFRMRELLAARDMSDWPDE----LRTCAGTAQFASDVRVMAARLRQEG 148 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 +DL W + FL A + +IAL R A+ + Sbjct: 149 CDPQDLTDAGVTWGVPEWRVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEV 208 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +I + R +S +A ++ D + + Sbjct: 209 RSRIKLLICDDVVECDSSQIRFLSQIARCHIPCVLTA--DPDQTIYGFRGAVAE------ 260 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 +L + +D + + + +S + ++ Sbjct: 261 --------------RLDEVIDEFPDVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQ 306 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR 400 + + VA + A + IA LR + + + A++T Sbjct: 307 LRRRANHSAVTEDGTVAAVRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELG 366 Query: 401 RVKLELTRFGINIDISAGIPLST-----TLHSSILTSLLNAIFKLNDFM-AIATLVKHPL 454 + L I + S + T + L + +ATL+ +PL Sbjct: 367 IIATVLAAEDIPVLRSRDEHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPL 426 Query: 455 AKFGFPEKYLSRAKNAL------------------ELVALRGNKNSYDIMDLKSLVLDRI 496 A + L N ++ V R Sbjct: 427 AGIDRSLVHRLETWCRLVRGIDIDWPLLGELGADPMAAVAAERGNERPEDGSRAEVDGRA 486 Query: 497 ATQKNN----THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 H + + ++V + + L + + + S Sbjct: 487 EEAGKEGSETAHEAYSVPPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSS 546 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 WT + R L L + + + I I+ Sbjct: 547 WTSSLRSRALAGDSAADRDLDGLCSLFDMADGAQTMAGIAGARRLIEVVR-------QEQ 599 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I + + E + ++ + FD + + GL EG WP + + S Sbjct: 600 IPADRARESDEDRDGVSVVTAHRVKGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPD 659 Query: 673 NLKTA----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--- 725 +L A E + + R + ++ S + L + Sbjct: 660 SLVAAPGWSENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDS 719 Query: 726 --------------------DFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRP------- 757 ++ Q LD R + P Sbjct: 720 LNFTSLTELVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQG 779 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P A S S I +L+ P + R F+ G+L H I Sbjct: 780 APHQADVAGEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASI-----GSLVHRICA 834 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQS 876 E + ++ + + ++ F + Sbjct: 835 ENMGHWSLPG-------ALTELEEAWPEIDVTAEWQRNAKLADAKAAVQRFDGWLQSRHR 887 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 + V + + + S + G DR++ G + D KTG + +ET + Q Sbjct: 888 QLIGTEVRVDGTIEVPSGTARVRGSIDRLERDAEGACYVVDLKTGASQSEETKRSHR-LQ 946 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + + A + +G I + V+ + L+ ++ S Sbjct: 947 IGVYQAVVASGGVKTIGPKPVSGAELVHLQIGAGKGKLSPKVDHQS 992 >gi|296107860|ref|YP_003619561.1| RecB family exonuclease, hypothetical [Legionella pneumophila 2300/99 Alcoy] gi|295649762|gb|ADG25609.1| RecB family exonuclease, hypothetical [Legionella pneumophila 2300/99 Alcoy] Length = 831 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 100/703 (14%), Positives = 218/703 (31%), Gaps = 104/703 (14%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 197 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 256 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 257 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 306 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 307 ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 342 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 343 MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 398 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL + P+ Sbjct: 399 SSHLTKTEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 457 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ +++ P + Sbjct: 458 QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 517 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 518 SLIIHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 563 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 564 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 623 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + Q I + P + + +I S+LE E++ + Sbjct: 624 PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 682 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 683 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 737 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK I K+ S ++ Sbjct: 738 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESWEDYR 787 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 ++ L+ L + +++ + S + + ++ +L R Sbjct: 788 QRWLEQLTHLAEEIKS---GYCSPRPQNLNICQRCDFQNLCRF 827 >gi|148359813|ref|YP_001251020.1| RecB family transporter exonuclease [Legionella pneumophila str. Corby] gi|148281586|gb|ABQ55674.1| RecB family exonuclease, hypothetical [Legionella pneumophila str. Corby] Length = 848 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 100/703 (14%), Positives = 218/703 (31%), Gaps = 104/703 (14%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 214 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 273 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 274 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 323 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 324 ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 359 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 360 MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 415 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL + P+ Sbjct: 416 SSHLTKTEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 474 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ +++ P + Sbjct: 475 QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 534 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 535 SLIIHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 580 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 581 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 640 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + Q I + P + + +I S+LE E++ + Sbjct: 641 PAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 699 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 700 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 754 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK I K+ S ++ Sbjct: 755 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWDTKEINTLKEDESWEDYR 804 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 ++ L+ L + +++ + S + + ++ +L R Sbjct: 805 QRWLEQLTHLAEEIKS---GYCSPRPQNLNICQRCDFQNLCRF 844 >gi|283852070|ref|ZP_06369344.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] gi|283572460|gb|EFC20446.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B] Length = 989 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 146/1067 (13%), Positives = 301/1067 (28%), Gaps = 146/1067 (13%) Query: 11 IAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE-ITG 69 I + FF + L+ T + + P +RA + L Sbjct: 7 IPWTEEFFAGVADRLVAETGGD-----------FQDTLVIFPLRRAARHLCDRLAAMPGL 55 Query: 70 KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 K +LP I ++GD + L+ + + R+ L ++ + Sbjct: 56 PKPLLLPEITAVGDWA---TSLGASLAPTPPVMLDVLDRVSLLHDIVREIAPE------- 105 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 E+ P+ LA++++ + +DL L + L Sbjct: 106 --AEATGEFPLDMTRFFPWGLELAELMEALFRHNIPGKDLDYL-EGQVLPPAAALLSRLG 162 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + ERL+ ++P + + + G + A L + Sbjct: 163 AIHARYRERLLAEGLATPGLCLSLAAGKAQVAVERLAGRRVFACGFSVLSGAEKALFKAL 222 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 +L D + + Sbjct: 223 WRS-GSLEMLWHGDPALADPGGRVHFACL------------------------------E 251 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 KR N + R T +L+ N+ + E + Sbjct: 252 QKRWLGDWNARAVVLQGGRRRRSRQKGDPDRPTLMLDATTANLSS--KRLRFFEGHDLHA 309 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 + ++ L + E+ + +A++ D L V L R +++IS G PL+ + + + Sbjct: 310 QLKALETCLAEA--EDLEDTAIVLPDTGLLSPVLHILPR--KDVNISMGYPLARSSLARL 365 Query: 430 L-----TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L + + L++HP K AL G + Sbjct: 366 LETILALQETRLASGRYHWRTLVALLRHPYLKML--RVGEEEPLRALFHTLEAGLRQGGA 423 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 D +L + + + + C L T T + Sbjct: 424 FADPLALEIGGEDGPPDP----------------------EALALCRQVLHTCLTGFSDV 461 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + L + L E L++ + +G A + Sbjct: 462 DTPRTLGNALAGLCELLLDPDHAGDAWERFLIDAECLFRLATGVVPALTSGRLADAVLPQ 521 Query: 605 W--IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ RL+ E V + E + L ++G LE+RLL+F + + E P + P Sbjct: 522 ATLFALLRRLLADERVPFEAEPLTGLQVMGVLETRLLSFRRVFVLDAVEDKLPGSAPYEP 581 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR------SLRENNIPTIASRW 715 L ++ L L + + AA++ G + + + + SR+ Sbjct: 582 LLPDTLRRLLALPDSRERDLVAAYNIYRLFFGAEEITVFYRTGAPGAGLFEDSKPVRSRY 641 Query: 716 LQRLLVL----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 +++LL G L P + S Sbjct: 642 VEQLLWEEEKRLGRVLTPGEPPVSLITLPLCPIPPADASLPRSPAVAERLDSYLSTKKLS 701 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + + P + R + L + ++ DR G + H ++ E + ++ Sbjct: 702 ATFFDTYLACPLRFFYRYLSPLAPLAEVAEEGDRAAVGEVVHEVLREFFAASLGRDIDAA 761 Query: 832 NHLMKQIIDSHFEKENLPPHIDII---WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + + D + + P + + L + + L H + + Sbjct: 762 DINAAALADLYETRMRQSPACQALPPDGQLLLLRAGRTRLMHMAASMPRTTPLALETELG 821 Query: 889 MAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-------------------- 926 ++E L G ADR+D + G + I DYKTG P Sbjct: 822 ASLETAGRTYLLAGRADRLDRREEG-LVILDYKTGSVPSLPVAVWGDEGFWSRIARWRGP 880 Query: 927 --------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 E A+++ QL L A A+ ++ L+ + + Sbjct: 881 ADDPGLFEEAARRIGSVQLPLYCWLYAAS-----KGETPADAAFVELRDAGAEKPLFGPR 935 Query: 979 -KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 ++ + +L+ + Q F R ++ ++ Sbjct: 936 LDPAGREDAIVRQTPDLLAFLLRHLATAQAFP--PRPDDRRCPYCDF 980 >gi|332885567|gb|EGK05813.1| hypothetical protein HMPREF9456_02077 [Dysgonomonas mossii DSM 22836] Length = 963 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 151/1049 (14%), Positives = 310/1049 (29%), Gaps = 162/1049 (15%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF + A Y + ++ T P +RA + +I K Sbjct: 3 PFLYNVAQA-----------YYKADGQNISRYTFVFPNRRAGVFFQHYLSQIAD-KPIFS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK-LPDIIKDLYPES 134 P I ++ D+ E+ I+ L L + + E Sbjct: 51 PQILTIADLFEQLS---------PYKKADRIEMLFMLFNIYKQVGKTNETFDEFLYWGEM 101 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L+ + A+ L I ++ + + L +++ ++ Sbjct: 102 LLNDFDDIDKYLVDAQQLFRNIKDLKDIDAGFSYLTE--------------TQIEVIRRF 147 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W+ L + + ++ + ++ Sbjct: 148 WSNFLP--------------VGENEKKKDFLEMWEVLFQLYSSL----RYQLAEKDQAYE 189 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G I +D ++ + S KLL +L K Sbjct: 190 GMIFRDVID------SFSKNPDYELPYEKIIFIGLNGHSKSEEKLLTYLHKKGIADFYWD 243 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 S + S + L + + V I + +A + Sbjct: 244 YSSPLVRDPQNKASFFMDKNKV---QFPSQLSLQPEELSFDQPTVEAIGIPSSIGQAKYV 300 Query: 375 AIALRMSLDE-------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 ++ L E +AL+ D NL + + I+I+ G L+ + S Sbjct: 301 HTIIKSLLAENQIVSSDQAMNTALVLPDENLLLPTLYSIPQEIDKINITMGYSLNNSSVS 360 Query: 428 SILTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 ++ + + + ++ H E+ + ++ L+ + + Sbjct: 361 GLMEHIFELQKNVRRSENSAGFYYKPVLAILNHRYITNIAGEEAKNLRQSILQYNKIIVS 420 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 +I L L+ I + +++ ++ L Sbjct: 421 VKELEIHPLFILIFKTIDNWYDAP---------------------EYLKNILSTLRKSLY 459 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + + E KT++ + + + Sbjct: 460 TQKEKENE--------------DELISARSVDIEGEFIVEYYKTINKMNDALQNVS--FE 503 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 N + ++ +LI +V E S L I+G LE+R L+FD LI+ +NEG++P A Sbjct: 504 MNIETYFKLLKKLIVNISVPFTGEPLSGLQIMGVLETRALDFDNLIILSMNEGIFPLKRA 563 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQ 717 + F+ ++ +L T E A+ F + + R + + SR+ + Sbjct: 564 TSSFIPYNLRKGFDLPTYEHQDSIFAYHFYRLINRAKRIYLLYDTRTEGLQSGEVSRYFK 623 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 ++ L F K T L + + + K L+ + S S I Sbjct: 624 QIKHLYADSFDIKEKLTVYKVSS-TESLPISISKTPEIQEKMNVFLQGGDKQLSASAINM 682 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-TPEINHLMK 836 +N P Y + + + + + GT+FH+I+ L + K T ++ H ++ Sbjct: 683 YLNCPLQFYFSVVENMAEEDEVVETIEASMFGTIFHSIMEWLYEPFKGKMITADLLHKIR 742 Query: 837 QIIDSHFEKENLPPHIDIIWR----------------HLFHKISHSFLEHEEKIQSSIEK 880 + D EN+ + + K L + + I Sbjct: 743 K--DEKLLTENIERSFAENYFKTDKIKKLTGQNYLTGEVLRKYIKQVLVTDAGLTPFIY- 799 Query: 881 IFVNIPAKMA--IE-SIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDP- 935 + KM + + L GF DR+D LK G I DYKTG + + + L D Sbjct: 800 VDSEERIKMEYSLPSGKTVSLKGFIDRVDELK-GRTRIIDYKTGKGVLRYKEMKDLFDKD 858 Query: 936 ---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT------NDKKK 980 Q+ + + ++I ++Y+R K + ND Sbjct: 859 LKDRPKAVMQVFMYSHLYMRKYPNKIIE---PGIYYLRNLFDSKFEPGVINKSGRNDDHI 915 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 E+ + + + + E F Sbjct: 916 TDFSMYREEFKEYFDMCLDEIFDPEVSFT 944 >gi|299067241|emb|CBJ38438.1| putative helicase, C_term RecB family exonuclease [Ralstonia solanacearum CMR15] Length = 966 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 152/962 (15%), Positives = 292/962 (30%), Gaps = 107/962 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +D + + VPT I +R Sbjct: 5 AFAPGPAFLPHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAQ 57 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125 +LP I +LG + DL +L S + RLL + + + W + Sbjct: 58 AAGALRLLPRILTLG-----HWLLDLPPEADLPAARSTLSRLLAVQQALKTQAWLREALG 112 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + + ++ ++ + D D ET+ + AL + L+ Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALETALSTALERTYAQLSE 171 Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL +I +W + AS P+ ++ MR + L GP++ T A Sbjct: 172 RFLGTESRIVLTFWR---LLSGASDPIPVRLRAMRRLLDALR----GPVVWMSPTDPEGA 224 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 ++ A + ++ + +TH + L Sbjct: 225 DLDFLTRAAGRVPVLRI--------------GYDWQAREPVAEAAAPATHGAFRTLLL-- 268 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 +++ P + + Sbjct: 269 ---------HAWPECGTVAPQAVEASTEAERP----------------------PPGLRI 297 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A +EA A L L+ ++ AL+ DR +ARRV+ L R + + G L Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 STT ++ L ++ + D A+ L+K P EL +N Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPAWVAELERRVRRRN 417 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + +A + +T V + L+ + Sbjct: 418 VSGGWG---RLRRLVAPRGTDTEVAEAADTGDGPPAGRLAERL--------GLLADEAAL 466 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 G+ ++ W L L + + + + + S + + + Sbjct: 467 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 526 Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 EW +++ L++ + + IL +R+ FD +++ G ++ P + Sbjct: 527 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 586 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718 F S ++ +L L + Q A D + ++ T P S WL+R Sbjct: 587 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 646 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L ++ L + T P P P T S + L Sbjct: 647 LQRRLAAA---GMRIDVPVVLPALQTARQPTDMPAPAAPVLVP------STLSAAAYNSL 697 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835 PY + R+L+L + + ++ D G + H I+ ++ ++ + + L+ Sbjct: 698 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPVDRFALL 757 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESI 894 + + D F + + + + S+L + ++ + A+ +I Sbjct: 758 QTLTDERFAPLLAEDGHVLRFYRRWQGVMPSYLAWQAAREADGWRFEAGEVDAEASIALT 817 Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLI-DPQLSLEAAALKAGSF 949 G +HL G DRID V + DYKT + D QL Sbjct: 818 GAPALHLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGA 877 Query: 950 SQ 951 Sbjct: 878 GG 879 >gi|29829619|ref|NP_824253.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29606727|dbj|BAC70788.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 1129 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 137/1066 (12%), Positives = 261/1066 (24%), Gaps = 150/1066 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ V + +++A ELR G + P + Sbjct: 66 TLVESVAARIARGGDPERVLVLTFSRKAAVELRDRMALRMG--AARAPQATTFHSFCYAL 123 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D+ L +S ++ + + L+ + L + Sbjct: 124 VRAHQDVGLFVEPLRLLSGPEQDVAVRGLLAGQPDLER---LGLAHVRWPDELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L + W+ A+ FL + V A Sbjct: 181 GFADEVRAVLARSRELGLSPGALRSFAARIGRPDWMAASAFLAEYLDVLDLQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R + + + + PA ARL+ +A G ++ D Sbjct: 241 VHRAVLLARRPGVAERLAAHYDAVYVDEYQDTDPAQARLLHALAGS--GRTLVAFGDPDQ 298 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + ++ L R L + + R Sbjct: 299 SIYTFRGADVNGILDFPDAFPRAD----GRPAPVEVLRTSRRSGAGLLAATRLLTQR--- 351 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 +P + P ++V E +IA LR + E Sbjct: 352 -----MPLNRLPAEKVRAHRELAPVRDGGHAEV--YTYPTPGTELDNIADVLRRAHLEDG 404 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIF--- 438 + + L+ A V+ LT G+ +DI PL + L + L A+ Sbjct: 405 VPWGEMAVLVRAGSRTIPTVRRALTAAGVPLDIDGNDLPLRHEPAVTPLLTALKAVAEAE 464 Query: 439 ----------------------------------------KLNDFMAIATLVKHPLAKFG 458 D TL+ PLA Sbjct: 465 ADASGTDASGTHAESSGPAGPAASPEPAGSAEPVEPARESSWLDTETALTLLASPLAGM- 523 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 L R AL + D +L R + + Sbjct: 524 -DAADLRRLGRALREEERAAGNHVPPPSD---ELLARALAEPERLVAHDPAYARGAQRLG 579 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + + L + D Sbjct: 580 VLLRKARERLAGGRARRRRALWELWDGTPWPQRLARAARRGGAAGRNADRDL-------- 631 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + E + + +I + I +T+ + + + ++ S+ Sbjct: 632 -DAVCALFATAARAEERTGGRGALNFLEEIDAQDIAADTLTRRAVRPDAVRLMTAHRSKG 690 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGT 694 L + +++ G+ EG+WP + L L A + A Sbjct: 691 LEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRA 750 Query: 695 RH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 R LI T + SR+L L V +R +L TT P Sbjct: 751 RERLIVTAVKAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVAALVAELRATTVDPR 808 Query: 754 YK----------------------RPKPFPPLEAQPRT-------------------YSF 772 RP + S Sbjct: 809 VSDTLREAAARRLARLAALGDEDGRPLVPSAHPYRWWGMYEPTESKVPLRNRDQPVVLSG 868 Query: 773 SEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + QL N + R + G + H ++ + + ++ Sbjct: 869 SALDQLANTCSLQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGHTPADLDV 922 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + + + FL+ ++ + + + Sbjct: 923 LMERLDSVWNALAFDAPWKSAQEKENARV--ALERFLQWHVMDRAGRTPVASEHDFDVTL 980 Query: 892 ESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGS 948 E+ + + G DR++ G + D+KTG P + PQL++ A+ G+ Sbjct: 981 EAGSYEVRIRGSMDRVEADGEGRAYVVDFKTGKQAPTAAEVGRH--PQLAVYQLAVSEGA 1038 Query: 949 FSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + + ++L+Q K A E E Sbjct: 1039 VDEAFDGVRPEPGGAELVQLRQGAAKRDGGEALPKVQAQEPLEGEW 1084 >gi|313886767|ref|ZP_07820474.1| hypothetical protein HMPREF9294_1146 [Porphyromonas asaccharolytica PR426713P-I] gi|312923808|gb|EFR34610.1| hypothetical protein HMPREF9294_1146 [Porphyromonas asaccharolytica PR426713P-I] Length = 996 Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats. Identities = 152/1081 (14%), Positives = 318/1081 (29%), Gaps = 171/1081 (15%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 + L + R N L + VPTKRA L+ E + +TILP I ++ + + Sbjct: 5 DNFLSQVVRRLRSNGTPLREQLLVVPTKRAGTFLQRELVAQLADAATILPRIVTIDEWIT 64 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD---IIKDLYPESPLSLPISPA 143 E +L + L + L + + + + + S + Sbjct: 65 EMSGRVILDNTAL---------ISILYEVYAAYLAEQGEEKAATDQMLRLSQTERMLRDF 115 Query: 144 NAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLAAD 186 + LA L ++ ++ + + L + E +W Sbjct: 116 QDMDLALANVEMLLGNLEELDAFD-DYSFLTEEECEAIRKFWTTLPKDFFKKPQGEEYLH 174 Query: 187 F---LKIASKYWTERLVELNASSPVGYQIALMRA---------EAEHLMKGTKGPIIIAG 234 F + K + RL EL + + E + G Sbjct: 175 FSVVWREIYKRFNARLTELGVAYRAAAYRLVAERDFTDDDLLKELRRHSGSKISLVSFIG 234 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 PA +++ + AI + W ++ +T+ + H Sbjct: 235 LYNLTPAEQKIIKKLQIASAEAINV--------QLYWQKVSLDATDEFT------DHLYR 280 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 ++ + ++ L + D S +++ S+ + S + + K P Sbjct: 281 TIEQNVELLGGEIIDGGVARVYSPKIHLLSLNSTILQPQVVNSLIDKIIEHDPKAP---- 336 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 E + IAI L + LI ++L + L + Sbjct: 337 ---------------EELRIAIVL-------NDEKTLIPLMKSLKQPTCTSL-------N 367 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 ++ G PL T ++ + LN + PL E + + + Sbjct: 368 VTMGYPLQYTSVATWIRRYLNIFG-----------LVSPL----DRELARVKLTCSRLQL 412 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 L +L + ++D+IA + + E + +L+ +TP Sbjct: 413 WLAAPLTRKLFGELTTTLMDQIALHHYAITASELRKIIEELTNGADEAVRQLLLEILTPS 472 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-- 592 T K + +L +E + + Sbjct: 473 FTGKELLGR------VGQLLELLKGTSSVPEEEEDEPADEPIDQVILSEALDQIILYVTQ 526 Query: 593 --------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 E+ + ++ +L+ ++ + L ++G LE+R L FD + Sbjct: 527 VSNLLQPNESDRHLLDTPSHVAYLLEQLLAVGSIPFEGAPLEGLQVMGFLETRTLTFDYV 586 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL 703 I+ + EG PK++ + +++ ++ T A+ F G + + + Sbjct: 587 IMLNVQEGDLPKSSHTTTLIPDLLRRAAHMTTYRTEDDTNAYHFYRLIQGAKEVYLLQDT 646 Query: 704 RENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 R + SR++ ++ L ++ + T Q R Sbjct: 647 RPKSISSMEPSRYVDQIRYLTNLQLQESAY--ADPLEARDETVSQITGQDEEVRDYLEQL 704 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + T+S S++ PY Y ++I + + + G++ H + + K Sbjct: 705 TSGER-TFSPSDLITYYKCPYQFYLKKIKGVGEPRPEPGVVTQIELGSIVHEYLEQFYKG 763 Query: 823 RINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 + K I + I ++ P I + LE + Sbjct: 764 LVQKAGDVITRDQLEHKVSRQTLTDIYKEIVSDKSAPDD---ILLTDLERYISKALEIDR 820 Query: 873 KIQSS---IEKIFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 + S ++ + K + I++TG DR+D + G I DYKTG + Sbjct: 821 LLLGSSGTLQLLASETKIKNVPFQWGTHTIYMTGQPDRVDKVSGGVCRIVDYKTGSIKQP 880 Query: 927 ETAQK-------------------LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 + +K Q L A I+ + Y Sbjct: 881 KKLKKLSFDTLTSWRFQKNNYKLGGYMLQSYLYALLYAQQPEVGIEELQPT--LYSLAPA 938 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 + + + + E K L +V + E+ F + + +Y + Sbjct: 939 VPASEGAIYLDEPKDLNAIKEIVFKYLDLLV----DPEKKFF--QTPVQDICKECDYKTI 992 Query: 1028 A 1028 Sbjct: 993 C 993 >gi|52842482|ref|YP_096281.1| endonuclease [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629593|gb|AAU28334.1| RecB family exonuclease, hypothetical [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 858 Score = 215 bits (548), Expect = 3e-53, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 219/704 (31%), Gaps = 106/704 (15%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 224 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 283 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 284 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 333 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 334 ------------------------DYLQESKLLQDQSFPTKLFIEDIAHHTPKLAELLKN 369 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 370 MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL + P+ Sbjct: 426 SSHLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 484 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ +++ P + Sbjct: 485 QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFDDDTPNLPC 544 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 545 SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 590 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 591 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 650 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + Q I + P + + +I S+LE E++ + Sbjct: 651 PAELERFIDQAIQGALNPIRQQHSQTFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 709 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 710 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK + I K+ + ++ Sbjct: 765 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030 ++ L+ L + +++G P R + ++ +L R Sbjct: 815 QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 854 >gi|239929060|ref|ZP_04686013.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 1114 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 129/1085 (11%), Positives = 264/1085 (24%), Gaps = 159/1085 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ V + ++RA ELR G + P + Sbjct: 22 TLVESVAARIARGGDPERVLVLTFSRRAAVELRDRMALRMG--AARAPRATTFHSFCYAL 79 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 80 IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQADLER---LGLAHVRWPDELRACLTTR 136 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ E L+A W A+ FL + V A Sbjct: 137 GFADEVRAVLARSRELGLDPEALNAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 196 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G ++ D Sbjct: 197 VHRAVLLARRPETARQLTARYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 254 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + L R L + + R + Sbjct: 255 SIYAFRGADVNGILEFPYAFRRAD----GRPAPVGVLRTSRRSGAALLAATRLVTQRMPL 310 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + ++ + V + E +IA LR + E Sbjct: 311 PR----------LPAEKVRAHRELTAAREGGRVEVYTYPTPGTELDNIADILRRAHLEDG 360 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS--------- 432 + + L+ A V+ LT G+ +D+ PL + L + Sbjct: 361 LPWRDMAVLVRAGSRTLPAVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAA 420 Query: 433 -------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 A A + + + A Sbjct: 421 AEGRGRGAGTVPGAARTAADEATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRP 480 Query: 480 KNSY-------------------------DIMDLKSLVLDRIATQKNNTHVPHW------ 508 D DL+ L ++ + Sbjct: 481 GAGPGEGPEPCWLDTETARTLLTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELL 540 Query: 509 ---------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + A L + + L T + + + W + Sbjct: 541 ARALAEPERLTVHDPAYARGAQRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLER 600 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + +L ++ E + + +I I +T+ Sbjct: 601 AARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIEAEDIAADTLT 656 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 657 RRAVRPDAVRLMTAHRSKGLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 716 Query: 680 YIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 A L+ T + SR+L L V +R Sbjct: 717 PGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRR 774 Query: 735 GQCYLDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRT--- 769 +L TT P RP + Sbjct: 775 PLSVAALVAELRATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFE 834 Query: 770 ----------------YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 S S ++QL + + R + G + Sbjct: 835 PTESRVPLRNRDQPVVLSGSALEQLAHTCALQWFLGR-----EVKADAPATAAQGFGNVV 889 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + E+ + + + + + + FL+ Sbjct: 890 HALADEVASGHTPADLDVLMERL-DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHV 946 Query: 873 KIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929 ++ + + +E+ + + G DR++ G + D+KTG P Sbjct: 947 MDRAGRTPVAGEHDFDVTLEAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEV 1006 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + PQL++ A++ G+ ++ + ++L+Q + K A + Sbjct: 1007 ARH--PQLAVYQLAVREGAVDEVFGGTRPEPGGAELVQLRQGAAVRDGGETLPKVQAQQP 1064 Query: 987 SEKSL 991 E Sbjct: 1065 LEGEW 1069 >gi|197302902|ref|ZP_03167953.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC 29176] gi|197297983|gb|EDY32532.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC 29176] Length = 1125 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 140/1071 (13%), Positives = 286/1071 (26%), Gaps = 150/1071 (14%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 + VP + +Q R I +L + + + P + + Sbjct: 35 LVLVPEQFTMQTQRDLCAAHPRGGIM---NIDAL-SFMRLAYRVFEEVGREEQPVLDDEG 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + L + R+ + L + +L + +S + +I ++ Sbjct: 91 KNLVIRRIAGKLEDDLKVLKGNLKKQGYIS-------------EVKSVISEFVQYGVDFD 137 Query: 168 DLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 L + ++ + + E L + + + ++ Sbjct: 138 KLDDFMEGLSQESYLYYKLQDIRKVYEGFEEYLRDRYIT--KEEMLDVLARAVCDSELLK 195 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I + G TG P RL+S + IV +D I+ Sbjct: 196 GSVIALDGFTGFTPVQIRLISELLKVSEKVIVTVEIDRREDPFIYRH--------PYQLF 247 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 S SL K + E+ L R + + + Sbjct: 248 ALSKQMVTSLVKTAQDAGAEVEESVCLYEKVPY---RFRENPEMAFLESELFRYSRRQYK 304 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVK 403 K + C ++L E N REEA +A ++R + E + A+I AD NL Sbjct: 305 KKKEESETCSGAISLHETKNPREEARYVAESIRKLVREKDYRYRDIAVIAADLNLYADAL 364 Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 F I + + + L SLL + + ++ ++ L F E Sbjct: 365 EKACELFEIPVFMDHKKSILLNSFVEYLRSLLAMAEQNFTYESVFRHLRTGLCGFTDEEI 424 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + V +T + + + E + Sbjct: 425 DRLENYCLALDIKGYKKWQQ-------AWVRRTPSTGEKELEELNHLRVIFVEKTMGLIQ 477 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 ++ + + + + + + +T L+ D + + + Sbjct: 478 VLKQKKKTVRDVT-------QAVYEYLVQEKLQQKITQLEKKFQDRGELALAKEYAQVYR 530 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + LF K + + ++ +++ ++ V + I +R+ N Sbjct: 531 IVMELFDKFVSLLGEEEIALKDYCELLDAGLEEAKVGVIPPSLDQVMIGDVERTRIKNIK 590 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH 696 L G N+ + P NT LS + A++ I + Sbjct: 591 ALFFVGANDTLLPGNTGVGGLLSECDREQFQKKEISLSPGAKEKIYIQKFYLYLNLTKPT 650 Query: 697 --LIYTRSLRENNIPT-IASRWLQRLLVLGGT---------DFFDNLKKRGQCYLDWTRK 744 L + + + S +Q L+ L + R L Sbjct: 651 KFLFLSWAKASGEGKSLRPSYLIQELMRLFPDLKPVDEEEKSWQQCEMTRRTGILRLAEG 710 Query: 745 LDYTTKQPHYKRPKPFPPLEA----------------------------------QPRTY 770 L + + + + P Sbjct: 711 LREKEQGLDAQWKELYTWFAGDEKSRSVVEKLLRAGFYKKEAGMLGSQMAEKLYLDPERV 770 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + +++ + YA + L+L + D G + H + +K + Sbjct: 771 SVTRLEKFASCAYAHFLSYGLRLSDRET--YGFEAMDLGNIAHQALERFARKAEEEKLDW 828 Query: 831 ---INHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKISHS--FLEHEEKIQSS 877 ++ID E L + + ++ + + Q Sbjct: 829 VTMPEERRTELIDESVESSVLDYGNTVLFSSARNEYMIYRIKRLIRRSVWALTRQMEQGD 888 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD---ITDYKTGD-NPKKETAQKLI 933 + +G DRID + +TDYKTG + + Sbjct: 889 FKPAGYEFKFG----------SGKIDRIDTCEDENRVYVKVTDYKTGRKVFDITSFYHGL 938 Query: 934 DPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSA-------- 983 QL + A + ++ A +FY R++ T++K + S Sbjct: 939 QLQLPVYLNAALEAEGKRYPGKEIVPAGIFYYRIQDPIVAREKTDEKTEESILKELKLDG 998 Query: 984 -----DELSEKSLKNLIEIVTLL-----QNGEQPFISHLRLSEKSNIQSEY 1024 +E+ E NL QNG S EK Y Sbjct: 999 LVNGEEEVIEHLEANLTGSSLYYPLRRNQNGLLGSASKALPQEKFETVLAY 1049 >gi|323701382|ref|ZP_08113056.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM 574] gi|323533641|gb|EGB23506.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM 574] Length = 1161 Score = 215 bits (547), Expect = 3e-53, Method: Composition-based stats. Identities = 124/1026 (12%), Positives = 258/1026 (25%), Gaps = 137/1026 (13%) Query: 59 ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 E+R E IL P + E L L V + +RL R++ Sbjct: 21 EIRQELRRSQEGAPIILLVPEQATFQ--YEYMLAGTPGLKGILRAQVLSFRRLA--YRVL 76 Query: 117 LIWRNKLPDIIKDLYPESPLSLPIS-----------PANAIWLAKNLADIIDIIETEEKK 165 I +L L + A A +LA + ++ Sbjct: 77 QEVGGAARAHIGELGKRMVLRRLLEQRKSELKIFHRAAKQPGFADSLAGTLAELKLYRIS 136 Query: 166 WEDL----HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 DL L + L + L + E L + P Y L Sbjct: 137 PADLQRGQAELLKNRQDSALLDKLNDLILLYSDLEEFLAGR-FTDPDDYLNLLAERLHNS 195 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 I I G TG P ++ + N V D + + + Sbjct: 196 -PSVKGAEIYIDGFTGFTPQEYGVIEKLLITANRINVALCFDPALANGSCSETDVFYPTV 254 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + + L ++ L + E L + + + Sbjct: 255 ETY---------HHLREMASSLRVAIEPATFLSMPESADRVPPRFAH------NPAVAHL 299 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRN 397 + + + + L+ N R E + A + R + ++ N Sbjct: 300 ERNYFQRPGEVCQQADGIKLVACANRRAEVEAAAREIIGLCRDHGLRWRDIVVMLRDLDN 359 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + + GI + I + ++ S L + + + + +K L Sbjct: 360 YSHLISTVFQDHGIPVFIDQKRSVLHHPLVDLMRSALEVVIQQWAYDPVFRYLKTDLVPV 419 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKS-LVLDRIATQKNNTHVPHWQSRLSEED 516 + + + D K + + T + +++ + Sbjct: 420 LRDDVDKLENYVLAHGIRGSRWTDGRDWTYRKHYTLEQEDRLYQQETGELNAINQVRYQA 479 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 D + + + T +L + + + R + Sbjct: 480 VSHLKSFADSVARA-QNVRDITTALFELLASLDVPGRLERWAREAEE----RSRLIEARE 534 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + + L +I+E K E+ ++ ++ + + + S Sbjct: 535 HAQLWNNVLMLLDEIVEALGDEKLTLEEYAQVLEAGLESLRLGIIPPGLDQVVVGTLERS 594 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFE 689 R N ++ G+++GV P ++ S + L K + + Sbjct: 595 RNPNVKAALVLGISDGVLPARPGEDGLFSDFERELLKQQGITLAPGARRKLFDEQYLIYV 654 Query: 690 MANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---------- 737 L + ++ + S+ + R+ L ++ Sbjct: 655 ALTRASDFLWLSYPQADDEGKALVTSQVIARVKELLPNLREQVIQVEPPDPGREIDFIAS 714 Query: 738 -------YLDWTRKLDYTTKQPHYKRP----------------------------KPFPP 762 R++ + P P Sbjct: 715 RDRSLSYLAAMLREVKAGRPVDPMWQDVYTWFARQPELRGQCRRVLAGLEHVNQEAPLPS 774 Query: 763 LEAQPR-----TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + S S +++ + P+A + L+L F D G FH + Sbjct: 775 GIGRKLYGSKLRASVSRLEKFTSCPFAHFLSHGLRLQERDTF--KLAAPDLGQFFHAALK 832 Query: 818 ELIKKRINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS 866 + + + + + E L + + +I Sbjct: 833 LFTHRLQEQGRDWAALTRTEAVTMAGEIVNELAPRLQNEILLSSARHRYLINKLRRIVER 892 Query: 867 FL--EHEEKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLKSGF-- 912 + E + S + + I + E + L G DRID G Sbjct: 893 AVLTLTEHARRGSFRPVALEIGFGVPGELPPVTFDLAGGGSMELVGRIDRIDAACEGGQQ 952 Query: 913 -VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKF 969 ++I DYK+G+ K + QL AL+ A + Y +K Sbjct: 953 YLNIIDYKSGETELKLADIYHGLRLQLLTYLDVALRYAHQLVKQPALPAGMLYFTVKDPL 1012 Query: 970 KIDCIT 975 Sbjct: 1013 VSSSGP 1018 >gi|54295115|ref|YP_127530.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens] gi|53754947|emb|CAH16435.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens] Length = 858 Score = 215 bits (546), Expect = 4e-53, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 220/704 (31%), Gaps = 106/704 (15%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 224 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 283 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 284 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 333 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 334 ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 369 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 370 MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL++ P+ Sbjct: 426 SSYLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLSDRCLPQ 484 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ E++ P + Sbjct: 485 QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPC 544 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 545 SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 590 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 591 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLK 650 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + Q I + P + + +I S+LE E++ + Sbjct: 651 PAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 709 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 710 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK + I K+ + ++ Sbjct: 765 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030 ++ L+ L + +++G P R + ++ +L R Sbjct: 815 QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFKNLCRF 854 >gi|91205399|ref|YP_537754.1| endonuclease [Rickettsia bellii RML369-C] gi|122425724|sp|Q1RIZ9|Y584_RICBR RecName: Full=Uncharacterized protein RBE_0584 gi|91068943|gb|ABE04665.1| RecB family exonuclease [Rickettsia bellii RML369-C] Length = 832 Score = 215 bits (546), Expect = 4e-53, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 28/470 (5%) Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 P++W +E G LS + + E I + ++ I L+ VK S + I Sbjct: 374 PDIWEKEGGAELSEFLNNLTEFSGSINVSKKDFPKIFALLLSN--VKYYKNIESKIIIGS 431 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 E L FD +IL N W T +P+LS+ + LN+ E ++ F++ Sbjct: 432 PEELALSRFDLVILPHFNSDNWSNTTTTHPYLSKEAKQILNIDYDEITPKLYSNYFDLLL 491 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 +I + + + +L ++ + C + LD TT Sbjct: 492 QNEEVIILNAKKYAGKLSTPCNLFLKLSN-KNVIPNKSVIPQLDCGISGVIFLDSTTSTQ 550 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P S ++I+ LI +PY YA++ILKL ++P +D G Sbjct: 551 DDIEQAAH--STFFPNILSVTDIETLIRNPYGFYAKKILKLRTQDKIWEEPKISDFGNFI 608 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H ++ E K +N + + I ++ LP + W+ +S +F+ + Sbjct: 609 HKVLEEYSKNYDQQNMLDQQQALLNIGNNILHSTILPTYTKKTWQTKLTLLSKAFILFDM 668 Query: 873 KIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + + + +KI+ I + + I I + G ADRI++ KS + I DYKTG P K+ + Sbjct: 669 ERRKNCQKIYFEIKGELNLNIAGQNIKIIGIADRIEISKSNCITILDYKTGTIPTKKEIE 728 Query: 931 KLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDCITND 977 + PQL +E+ + F + + + Y+++ + Sbjct: 729 LGLSPQLIIESLMILENGFNISHSYAPLCHSCESGNPIENITIAYVKITS---TEPYVQT 785 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 + + E EK + LI ++ + F+ L +S+ ++Y HL Sbjct: 786 TEISLSMETLEKHKQGLIRLLEYYVK-NKSFVYDLDMSK----YNDYLHL 830 Score = 48.8 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 76/219 (34%), Gaps = 43/219 (19%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F ++ +++ EN R + I +P + +L+ + ++ LP Sbjct: 7 FLQDFAEFIVSKFGKENLRK---------ELKIILPNSLSCTKLKGLLTDNYNVQN--LP 55 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +++ +S ++ L L+++I ++ Sbjct: 56 IIIPFNAIISKKDSSEDY--------MSKMEELFTLSKIITEYKK--------------- 92 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 L +P A+ A L + + + ++ +W FL+ + W Sbjct: 93 -LDFTPEEALKAAGILNKLFADLVNNNVD---IKLIETYNNSEYWQNIYKFLEYSFLKWQ 148 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 + + + + + + + K + +I+AG Sbjct: 149 KNEKQSSNNYKLKLLLEEIAR-----TKNSCKQVILAGI 182 >gi|291437397|ref|ZP_06576787.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291340292|gb|EFE67248.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 1126 Score = 215 bits (546), Expect = 4e-53, Method: Composition-based stats. Identities = 129/1085 (11%), Positives = 264/1085 (24%), Gaps = 159/1085 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ V + ++RA ELR G + P + Sbjct: 34 TLVESVAARIARGGDPERVLVLTFSRRAAVELRDRMALRMG--AARAPRATTFHSFCYAL 91 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 92 IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQADLER---LGLAHVRWPDELRACLTTR 148 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ E L+A W A+ FL + V A Sbjct: 149 GFADEVRAVLARSRELGLDPEALNAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 208 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G ++ D Sbjct: 209 VHRAVLLARRPETARQLTARYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 266 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + L R L + + R + Sbjct: 267 SIYAFRGADVNGILEFPYAFRRAD----GRPAPVGVLRTSRRSGAALLAATRLVTQRMPL 322 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + ++ + V + E +IA LR + E Sbjct: 323 PR----------LPAEKVRAHRELTAAREGGRVEVYTYPTPGTELDNIADILRRAHLEDG 372 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS--------- 432 + + L+ A V+ LT G+ +D+ PL + L + Sbjct: 373 LPWRDMAVLVRAGSRTLPAVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAA 432 Query: 433 -------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 A A + + + A Sbjct: 433 AEGRGRGAGTVPGAARTAADEATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRP 492 Query: 480 KNSY-------------------------DIMDLKSLVLDRIATQKNNTHVPHW------ 508 D DL+ L ++ + Sbjct: 493 GAGPGEGPEPCWLDTETARTLLTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELL 552 Query: 509 ---------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + A L + + L T + + + W + Sbjct: 553 ARALAEPERLTVHDPAYARGAQRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLER 612 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + +L ++ E + + +I I +T+ Sbjct: 613 AARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIEAEDIAADTLT 668 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 669 RRAVRPDAVRLMTAHRSKGLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLT 728 Query: 680 YIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 A L+ T + SR+L L V +R Sbjct: 729 PGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRR 786 Query: 735 GQCYLDWTRKLDYTTKQPHYK----------------------RPKPFPPLEAQPRT--- 769 +L TT P RP + Sbjct: 787 PLSVAALVAELRATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFE 846 Query: 770 ----------------YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 S S ++QL + + R + G + Sbjct: 847 PTESRVPLRNRDQPVVLSGSALEQLAHTCALQWFLGR-----EVKADAPATAAQGFGNVV 901 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + E+ + + + + + + FL+ Sbjct: 902 HALADEVASGHTPADLDVLMERL-DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHV 958 Query: 873 KIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929 ++ + + +E+ + + G DR++ G + D+KTG P Sbjct: 959 MDRAGRTPVAGEHDFDVTLEAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEV 1018 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + PQL++ A++ G+ ++ + ++L+Q + K A + Sbjct: 1019 ARH--PQLAVYQLAVREGAVDEVFGGTRPEPGGAELVQLRQGAAVRDGGETLPKVQAQQP 1076 Query: 987 SEKSL 991 E Sbjct: 1077 LEGEW 1081 >gi|256785339|ref|ZP_05523770.1| ATP-dependent DNA helicase [Streptomyces lividans TK24] Length = 1121 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 130/1103 (11%), Positives = 275/1103 (24%), Gaps = 162/1103 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ ++ + +P + + +++A ELR G + Sbjct: 15 PGTGKTTTLVESVADRI------ARGGDPE---RILVLTFSRKAAVELRDRMALRIG--A 63 Query: 73 TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P + A D L +S ++ + + L+ + L Sbjct: 64 ARAPRATTFHSFGYALVRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGL 120 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + A + ++ + L A W AA FL Sbjct: 121 AHVRWPDELRACLTTRGFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAE 180 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V A + R E + + + + PA RL+ +A Sbjct: 181 YLDVLDLQGVLDYAELVHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALA 240 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + G ++ D + + + + L R Sbjct: 241 D--GGRTLVAFGDPDQSIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSG 294 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 L + + R + + + ++ + V E Sbjct: 295 SGLLAATRLLTQR----------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTE 344 Query: 371 AISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 +IA LR + E + + L+ A ++ LT G+ +DI PL Sbjct: 345 LDNIADILRRAHLEDGVPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEP 404 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAK----------------------------- 456 + L + L A+ + T + Sbjct: 405 AVAPLLTALRAVAEAEADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDP 464 Query: 457 -----FGFPEKYLSRAKNALELVALRGNKNSY------------DIMDLKSLVLDRIATQ 499 E + K + A R ++ + + + + L R+ Sbjct: 465 DADADAYVDEGGDAATKPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRA 524 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVD--------------------HILQCITPLVTYKT 539 + D+ LA L + + + L + Sbjct: 525 LRDERRAAGNPLPPPSDELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGS 584 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + W + +L ++ E + + Sbjct: 585 AEEALWDLWDGTPWPTRLERSARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGR 640 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +I I +T+ + + + ++ S+ L + +++ G+ EG+WP Sbjct: 641 GALNFLEEIDAEDIAADTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRR 700 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASR 714 + L L A + A R L+ T + SR Sbjct: 701 RGSLLEADRIGRDGLAEPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSR 760 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------------- 758 +L L V +R +L TT P P Sbjct: 761 FLTELGV--EPADVTGRPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTD 818 Query: 759 -------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL--------------DFIP 797 P + +E K + D L + Sbjct: 819 EDGRPLVPSAHPYRWWGMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVK 878 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 G + H + E+ + + + + + + Sbjct: 879 ADAPATTAQGFGNVVHVLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKAN 937 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDI 915 FL+ ++ + + +E+ + + G DR++ G + Sbjct: 938 ARV--ALERFLKWHVMDRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYV 995 Query: 916 TDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKI 971 D+KTG P + PQL++ A++ G+ + + + L+Q Sbjct: 996 VDFKTGKQAPTSSEVARH--PQLAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPK 1053 Query: 972 DCITNDKKKYSADELSEKSLKNL 994 K A E E Sbjct: 1054 RDGGETLPKVQAQESQEGPEGEW 1076 >gi|146298459|ref|YP_001193050.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101] gi|146152877|gb|ABQ03731.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101] Length = 919 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 142/1015 (13%), Positives = 296/1015 (29%), Gaps = 167/1015 (16%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L+ TI +P KRA L + T K+ + P I S+ D V++ + + S L Sbjct: 20 DKLSETTIVLPNKRAKVFLIEALKKET-SKTILSPEIISIEDFVQDVASIRSIDSIEL-- 76 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 L E + L +K +L+ AK L + I+ Sbjct: 77 -------LFEFYEVYLSVTDKQHQQSFELFANW--------------AKTLLQDFNEIDR 115 Query: 162 EEKKW-EDLHALKNEKYGMWW----LLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 L LK+ + W L+ +W L+ Sbjct: 116 YLLDPYHVLSYLKDIEDIKKWGIEVENKTKLLENYIDFWK-----------------LLP 158 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + L I G G I V N + Sbjct: 159 MYYDSLYNHLLNKSI--GYQGLIYRE-----AVNNLNH--------------------FS 191 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + + + K++ L + + Sbjct: 192 NTISNRNFIFAGFNALNAAEEKIVQHLLALDQAKIYWDVDQTFLNDPYHDAGLFVRRFKE 251 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALI 392 S I + ++ +I +A + +++N K A++ Sbjct: 252 SWKHYKSHPFEWIVDDFSQTKNIEVIGTPKTIGQAKIAGSIIEDLINKNPAASLDKVAVV 311 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL--------NDFM 444 + NL V L ++I+ G ++ + Sbjct: 312 LGEENLLIPVLYSLPSSVGALNITMGYSGKNNPSQILVAKFFKMHTNALSRAGNYVFYYK 371 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 + ++ H L + +L R + NK Sbjct: 372 DVLDVLTHSLVEPYANVNHLVRIIKENNYTFITLNKIL---------------------- 409 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + L + K + + + + + Q+ Sbjct: 410 ---------------------DLNPNPSKLFSLLFQKWENGSVAVLENISAVLLLIKQSF 448 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 D + F + + I N I ++ID V + E Sbjct: 449 SNDNEEEKIAKTFVYAVFKVINKLINYYSQHKHID-NIDTLHAIYKQIIDVAEVSFEGEP 507 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQ 683 L I+G LESR+L+FDT+I+ +NEG +P ++N F+ ++ +L L T EK Sbjct: 508 LRGLQIMGVLESRVLDFDTVIVTSMNEGKFPAGKSQNSFIPYDVKKELGLPTFKEKDAIY 567 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 H + + +++ + + + SR++ +L V + Sbjct: 568 TYHFYHLLQRAKNIYLIYNTENDGLDAGERSRFITQLEVEKKSRHNLTFDIYNPVLPTTA 627 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 E +S S + I +P Y ++IL++ + +++ Sbjct: 628 YL----PMVIPKSDAVMERLKEIALSGFSPSALTSYIRNPTEFYFQKILRIREVEEVEEN 683 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKENLPPHID 853 GT+ H + L + K E ++ + + +++ + + Sbjct: 684 IALNTLGTIIHETLKALYDPFVEKFISESDILNCFKLLDDEVLKQFKLVYKEGEIKKGRN 743 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSI---EKIFVNIPAKMAIESI----GIHLTGFADRID 906 ++ + + +FL+ E + + + I + + + + + G DRI+ Sbjct: 744 LLAFEVAKRNVSNFLKIELESIKNGDTIKIIALEKTFERELVHSELPFPVLIKGNVDRIE 803 Query: 907 LLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLSLEAAALKAGSFSQIDCR 955 L++G + I DYKTG K + Q+ A + + Sbjct: 804 -LRNGKIRIVDYKTGKVEKTNIVLKSWNGLTQELKNDKIIQVLAYAFMYEQLAGE--TPI 860 Query: 956 KVANLFYIRLKQKFKIDCITNDK--KKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 +V + + LK F DK + + + ++ ++ ++ + + PF Sbjct: 861 EVGIISFKNLKSGFLSFGFKEDKDLEVTVSKAILNSYVEEIVLLLKEIFDLSIPF 915 >gi|54298166|ref|YP_124535.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris] gi|53751951|emb|CAH13375.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris] Length = 858 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 101/704 (14%), Positives = 219/704 (31%), Gaps = 106/704 (15%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 224 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRVLRDCFEPNLFNIS 283 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 284 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYIGKAKDEFLQRS---------- 333 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 334 ------------------------DYLQESKLLQDQSFPTKLFIEDVAYHTPKLAELLKN 369 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 370 MNFYPEKT----TLDEWIELFQERLNGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLI 425 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL + P+ Sbjct: 426 SSHLTKKEAFETLKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLTDRCLPQ 484 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ +++ P + Sbjct: 485 QTRLSPFIPFELQRELGMPHSMPARELQYAKQILQRLQRGSMETVFSYPQFDDDTPNLPC 544 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 545 SLITHYPAYLSRSADNKTNVQS--------------CLVPLEENYEVPVKSDESISGGTS 590 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 591 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEHLIKLK 650 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + + I + P I + +I S+LE E++ + Sbjct: 651 PAELERFIDEAIQGALNPIRQRHSQAFPDLIANVEYMRLKRIILSYLEWEKQR-PPFKIT 709 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 710 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 764 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK + I K+ + ++ Sbjct: 765 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 814 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030 ++ L+ L + +++G P R + ++ +L R Sbjct: 815 QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 854 >gi|326798724|ref|YP_004316543.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21] gi|326549488|gb|ADZ77873.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21] Length = 970 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 138/1100 (12%), Positives = 305/1100 (27%), Gaps = 227/1100 (20%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF +E+ L+ E L + I KR ++ E+ K Sbjct: 3 PFLKEVANDLIARFGSE-----------LKDIAIIFNNKRPEVYMKKYLAELI-GKPIWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P ++ F + ++L L + + ++ Sbjct: 51 PSFFTVQQFFNNAFVEREAD---------KLTQILTLYQCYNAIQQRIN----------- 90 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDL------HALKNEKYGMWWLLAADF-- 187 +S +A+ + + ++ + + ++ AL +++ + F Sbjct: 91 -GKTMSIERFYPMAETILNDFAQLDYDLVEPNEVYTELYDIALIEKQFPHFSEEQLSFMA 149 Query: 188 ------------------------LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 L + + + L E ++ + + + + Sbjct: 150 QFWSTFNSEKHSYIQDRFIELWKTLPLLYTDFHQALKERGLATNSQFYRSFAKGDETSPS 209 Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ G A A L A+ +D + + Sbjct: 210 YIYQFKQLVFVGFNALNKAEALLFKKWQK-EKRALFYFDVDRYYLDDVQQEAGAF----- 263 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 L + L+ + + LG N++ R I T+ + Sbjct: 264 -------------LRRNLNSHGL----LHALGAPFNQLADRKQNIKIVQTTSYTAQAKLL 306 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 D + + A++ AD L Sbjct: 307 DSFLVDKKSTDAISQGL-----------------------------IAVLLADERLLIPT 337 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + +I+ G P+S + I+ L + K L + E Sbjct: 338 LQSIPVSIET-NITMGFPISQSPIYGIVDLWLRIQERYLQQ-------KSDLIYYKDVEI 389 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 +L H + KE Sbjct: 390 FL-----------------------------------------SHPLIHTPDPIKEQVQQ 408 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNL--SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L+ PL + ++ + K ++ + K + + Sbjct: 409 LIYTNHYINVPLAELQAVSRTSFFDKRTDGRYLIKNLQEIIREIFQIRKEKELLTYPDAA 468 Query: 581 -GKTLSSLFSKIIETGSCIKANAIEW-IDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + +++ + S + + ++E+ I +I + + G T + + S + ++G LE+R Sbjct: 469 IFTEVFKILNQLYDALSTLPSLSVEFTISLIRKSLQGITAAIEGDPLSGVQVMGLLETRN 528 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHL 697 L+F + + G+NEG+ PK ++ F+ ++ L E +A+ F + Sbjct: 529 LDFKEIYILGVNEGILPKTSSSATFIPDSIRRAHGLPVLENQEALSAYLFYRLMQRAEQI 588 Query: 698 IYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHY 754 + + N SR++++L +F + +++ ++ + Sbjct: 589 TLVYNGHVDENSSGEISRFVKQLQFESHFNFIELKQQQIIKTNEAPPAMEIKKVNEIGKI 648 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + +P S + + P + + + K+ +D + G++ H Sbjct: 649 LQSYLNRDNSLRP-GISATAFTTFLQSPLLFFLKYVAKIKEPQLLTEDFEANRIGSIIHE 707 Query: 815 IITELIKKRINKNTPEINHLMKQIIDS-----------------HFEKENLPPHIDIIWR 857 I+ ++ + +K + + N P + I Sbjct: 708 IMQWFYEELKRVSPHITAQRIKDQLSRLDHLCLKATAKDFYGNPAYFDINSPSSTEKIVL 767 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVN------IPAKMAIESIG--IHLTGFADRIDLLK 909 + + + F+ H+ K I + I + ++ + L G DR+D K Sbjct: 768 EIVKEYAQIFIHHDLKNTP-FTIIELENKQDYVIDFPITVDGKESSVKLYGIIDRVDE-K 825 Query: 910 SGFVDITDYKTGD-NPKKETAQKLIDP----------QLSLEAAALKAGSFSQIDCRKVA 958 G + I DYKTG L DP Q + + V Sbjct: 826 DGKIRIVDYKTGSDALDYTDIDSLFDPSSGKFNKALLQTLFYTYIYE----KKTGKIGVE 881 Query: 959 NLFYI--RLKQKF-----KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 Y+ RL+Q+ K + S E L +++ L N + PF Sbjct: 882 PNLYVARRLRQEGSLFYTKSRGSKFLLSEASLSSFKEAFELRLRQVLEDLFNQQIPF--K 939 Query: 1012 LRLSEKSNIQSEYDHLARVA 1031 Y R Sbjct: 940 HDPRIDLPYNDHYQEFFRSG 959 >gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] gi|226184822|dbj|BAH32926.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] Length = 1103 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 128/1070 (11%), Positives = 291/1070 (27%), Gaps = 136/1070 (12%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82 LV+ SV + ++RA ++R + G ++T P+++++ Sbjct: 61 LVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGPQATREPLVRTVH 120 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 N P RL+ A + R L I+D P Sbjct: 121 SYAFAVLRLQAAAHGNAPP------RLITGAEQDSVLREMLRGDIEDGALRWPER-LRPA 173 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L D++ EDL L ++ W+ A F + + Sbjct: 174 LGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFAEAYEQ--------- 224 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + EA + G+ + AT + +++ Sbjct: 225 -----GVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRHLLVDDA 279 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----KLLDFLDIKREDVKRLGNVSN 318 P A + + + L L + ++ + + V+ Sbjct: 280 QHLDPQAAQLVRLIGTGTAGTVIAGDPDQSVFGFRGADSAFLLGLAERGDERQIVLPVTY 339 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 I+ ++ + + + + + + V ++ +EA +A L Sbjct: 340 RNNADVASIAAKIAARLPGNLAHRIAVPSDLTDENPGRASVRVLG--TTAKEAAVVADTL 397 Query: 379 RMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSL 433 R + + + ++ + ++ L G+ + +A +PL+ S L + Sbjct: 398 RRAHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGLLLV 457 Query: 434 LNAIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L A+ L+ P+ R +A S + Sbjct: 458 LRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELA-------SGSDRDSSEL 510 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 L I ++ +L++ + ++ + + PL + + Sbjct: 511 LRLILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAWQATG 570 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-R 611 + + +L ++ + + ++D +T + Sbjct: 571 LERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRS-----QLSGFVDYLTSQ 625 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 I ++ + + ++ + + + + G+ EG+WP A+ L D Sbjct: 626 EIPTDSRSRSVIAPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALID 685 Query: 672 L------NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRW 715 L +A + + + A + R + ++ + + SR+ Sbjct: 686 LVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDLVPSRF 745 Query: 716 LQRLLVLGGTD----------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--------- 756 + L+ + R +L P Sbjct: 746 VDELIRGDAYSDDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPEKHSRA 805 Query: 757 ----------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 P E P + S S I+ L P Sbjct: 806 ARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPLRWVFE 865 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 R D GTL H L++ + P+ + + + Sbjct: 866 RHGG------SDGDNTHAIAGTLVH----TLVQALAGRIPPDQVEKALENAWESIDLGSQ 915 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFAD 903 + R ++ +F + + ++ V + + +E + L G D Sbjct: 916 WYSRRELNRTR--EMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRID 973 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 R++ G + D KT NP A + QL+ A G+ + + + Sbjct: 974 RLERDTQGRPVVVDVKTARNPVSNEAAQSHA-QLAAYQVAAAEGAIAGEPATQPGGARLV 1032 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + + K D + E E + Q + +++ + Sbjct: 1033 FVAKSNKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQ--YLARVN 1080 >gi|157827002|ref|YP_001496066.1| endonuclease [Rickettsia bellii OSU 85-389] gi|157802306|gb|ABV79029.1| RecB family exonuclease [Rickettsia bellii OSU 85-389] Length = 846 Score = 214 bits (545), Expect = 6e-53, Method: Composition-based stats. Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 28/470 (5%) Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 P++W +E G LS + + E I + ++ I L+ VK S + I Sbjct: 388 PDIWEKEGGAELSEFLNNLKEFSGSINVSKKDFPKIFALLLSN--VKYYKNIESKIIIGS 445 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 E L FD +IL N W T +P+LS+ + LN+ E ++ F++ Sbjct: 446 PEELALSRFDLVILPHFNSDNWSNTTTTHPYLSKEAKQILNIDYDEITPKLYSNYFDLLL 505 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 +I + + + +L ++ + C + LD TT Sbjct: 506 QNEEVIILNAKKYAGKLSTPCNLFLKLSN-KNVIPNKSVIPQLDCGISGVIFLDSTTSTQ 564 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P S ++I+ LI +PY YA++ILKL ++P +D G Sbjct: 565 DDIEQAAH--STFFPNILSVTDIETLIRNPYGFYAKKILKLRTQDKIWEEPKISDFGNFI 622 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H ++ E K +N + + I ++ LP + W+ +S +F+ + Sbjct: 623 HKVLEEYSKNYDQQNMLDQQQALLNIGNNILHSTILPTYTKKTWQTKLTLLSKAFILFDM 682 Query: 873 KIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + + + +KI+ I + + I I + G ADRI++ KS + I DYKTG P K+ + Sbjct: 683 ERRKNCQKIYFEIKGELNLNIAGQNIKIIGIADRIEISKSNCITILDYKTGTIPTKKEIE 742 Query: 931 KLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDCITND 977 + PQL +E+ + F + + + Y+++ + Sbjct: 743 LGLSPQLIIESLMILENGFNISHSYAPLCHSCESGNPIENITIAYVKITS---TEPYVQT 799 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 + + E EK + LI ++ + F+ L +S+ ++Y HL Sbjct: 800 TEISLSMETLEKHKQGLIRLLEYYVK-NKSFVYDLDMSK----YNDYLHL 844 Score = 49.2 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 80/228 (35%), Gaps = 44/228 (19%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 +F I+ F ++ +++ EN R + I +P + +L+ + Sbjct: 13 IFMIS-DISFLQDFAEFIVSKFGKENLRK---------ELKIILPNSLSCTKLKGLLTDN 62 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 ++ LPII ++ +K +++ +S ++ L L+++I ++ Sbjct: 63 YNVQN--LPIIIPFNAIISKKDSSEDY--------MSKMEELFTLSKIITEYKK------ 106 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L +P A+ A L + + + ++ +W F Sbjct: 107 ----------LDFTPEEALKAAGILNKLFADLVNNNVD---IKLIETYNNSEYWQNIYKF 153 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 L+ + W + + + + + + + K + +I+AG Sbjct: 154 LEYSFLKWQKNEKQSSNNYKLKLLLEEIAR-----TKNSCKQVILAGI 196 >gi|89098017|ref|ZP_01170903.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL B-14911] gi|89087180|gb|EAR66295.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL B-14911] Length = 1163 Score = 214 bits (545), Expect = 6e-53, Method: Composition-based stats. Identities = 120/951 (12%), Positives = 256/951 (26%), Gaps = 135/951 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + ++ + + L L++ + +++ K + E L L Sbjct: 118 GFIGQMEQMLTEFKRYCIEPGALAGKREELESRRGSRGLQDKLHDMELIYKQFEEGL--L 175 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 L+ +A + I G P ++ + V L Sbjct: 176 GKYVDSEDYFRLLTEKAGMSEYLKNAEVYIDGFYSYTPQEYMIIEQLIRVCKRVTVTFTL 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D TA+ + ++ + V + ++ Sbjct: 236 DRPYKTAV-----------------PEDLHLFRMSA------ESYQSVYEIAGMAGAEME 272 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + ++++ + S ++ ++V + +A N R E A ++ Sbjct: 273 QEVLLNGQQRWDNDSLRHMERAFSSRPAEPFAGKANVHIAQAVNRRAEIEGAAREIKRLA 332 Query: 383 DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 E K AL+ + ++ + +GI I + ++ S L I Sbjct: 333 AEEGYRFKDIALLMRNGSVYHDIIETIFDDYGIPFFIDQKRTMMNHPLIELIRSSLEVIT 392 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + + VK L + + + LE L RI Sbjct: 393 GYWRYEPVFRAVKTELLFPSRADLGVIREKMDKLENYVLAYGVQGEKWTKKDRWNYRRIR 452 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDW 553 + V + EE+ L+ + + + + + + L D Sbjct: 453 GLEFEQIVQTDLEKEREEELNQMRDLIAAPILRLSRRLKKADSGRRLCEAVYLYLEELDI 512 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + D+ + ++ + L + +E K + ++ I+ + Sbjct: 513 PTKLERW-KLEEEDKGNLVKAREHDQAWNAVMELLDQFVEMLGDEKISMKQFASILDSGM 571 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL- 672 + + +SRL + + GLNEGV P + L+ + L Sbjct: 572 ESLRFSLVPPAMDQVLAADLDKSRLSDIKAAFVIGLNEGVLPGKFTEEGVLADADREKLL 631 Query: 673 --NLKTAE-KYIGQAAHDF--EMANGTR--HLIYTRS-LRENNIPTIASRWLQRLLVLGG 724 LK A + DF A T HL + E + S ++ R L Sbjct: 632 QSGLKIAHGSKVRLLDEDFLAYRAFSTPSSHLYISYPLANEEGKALMPSPYISRANELFP 691 Query: 725 TDFFDNLKKRGQCYL-------------------------------------------DW 741 Sbjct: 692 EAGQLMWMADPFELPEEEQLLFAMNEDTSLSYLASQLQMNKRGYKISGIWWDVYNYYHAH 751 Query: 742 TRKLDYTTKQPHYKRPK---------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 R D K + L + S S ++ + P++ +A+ LK Sbjct: 752 PRLGDTARKVLSSLHYENRTARLSEEAAKELYGETIQASVSRMELFHSCPFSHFAQHGLK 811 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSH 842 L F+ + D G LFH + + + ++K ++ +++ Sbjct: 812 LRDRKVFR--LEAPDIGDLFHAALKFIAETVMDKRMSWSDMTRQECEKLAKEAVEMLAPK 869 Query: 843 FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIH 897 + E L + I ++ E S + + + K + + Sbjct: 870 LQNEILLSSNRHFYIKRKLENIISRASYILSEHSRASGFSPVGLELGFGPKDKLPPLSFK 929 Query: 898 LT--------GFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AAL 944 L G DR+D ++ ++ + DYK+ + Q+ + Sbjct: 930 LRNGTNMELVGRIDRVDKAENENGVYLRVIDYKSSARDLNISEVYYGLALQMLTYLDIII 989 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A + Y + + I N K + DE+ E+ K Sbjct: 990 THSGDIAGKKADPAGVMYFHV-----HNPIVNSPKLLTLDEIEEEIFKKFK 1035 >gi|124006749|ref|ZP_01691580.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123987657|gb|EAY27357.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 1030 Score = 214 bits (545), Expect = 6e-53, Method: Composition-based stats. Identities = 143/1089 (13%), Positives = 318/1089 (29%), Gaps = 171/1089 (15%) Query: 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLS 96 D L + + +PT+R+ LR F+ + P I ++ D V E D + Sbjct: 14 DHHGTEGLKGLCVVMPTRRSCHVLR-HFMVAQKVDAEDFPTILTIDDFVTETTQTDTSSA 72 Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 L LLEL + ++ + L + AK L + Sbjct: 73 IVL---------LLELYDVFRKIDPEIKLEKFTSWGYVLLKDFEQIDRNLVDAKKLFSNL 123 Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 I+ + +L + + + L+ + ERL + L Sbjct: 124 SDIKN--IERWNLGEQQITTKISRYFKLWENLQETYTQFQERLTSNGQAYMGMLYRKLAN 181 Query: 217 AEAEHLMKGTKGPIIIA-GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 E L++ K + G + + + + D ++ I N Sbjct: 182 EIDELLIQPDKYNQFVFIGFNALTKSEESIFKQLVKKGKAEVFWDTDDYYMREGIENKAG 241 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + + Q + L +++V+ + + + GR+ Sbjct: 242 MFLKQYKKDWAGDAWNFQG------NHLQETKKEVQVISVANASLQGRA----------- 284 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395 T+ + + N + +A++ +D Sbjct: 285 TNQLLENWAINPLKANTNGQGTG---------------------------GSDTAIVLSD 317 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN-------------------- 435 N+ + L++ ++I+ G+ L + +++ +L Sbjct: 318 ENILVPLIHSLSKEYAGMNITMGLALRNSALFNLVDALFEQNQTKIRVVLEQEEEKEEEE 377 Query: 436 ---AIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + +I L+ HP + F K + E + Sbjct: 378 KDQTATDDKKPEKVSKFSYRSIIKLLNHPFIR-QFERKVEAEITTEGETRPGFIQEVVRF 436 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 I + L + A + T P ++ ++++ Q L + N Sbjct: 437 INKNNQIFLSQAALL-DFTETPLFKEDKTDDELARIHQQAPAFRQLFEILFSSWKNALDA 495 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + L + + E+ + + + I T + Sbjct: 496 IACF------EQLMELLNF-----ETNQFEIKYAEQFREILNDLKFFIRTRRG-FISIHT 543 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + + + V EKS++L +L +E+R ++FD +IL +NE + PK N F+ Sbjct: 544 FKIFLYQAFREAKVAFDSEKSTSLQVLSLVETRNIDFDNVILLSVNETILPKGKKSNSFI 603 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLV- 721 + L T ++ F + + S + SR L +L Sbjct: 604 PFDISQSYGLPTYVDQEAMLSYHFYRLLQRAKKVAILHVSPSDTYGGYEKSRLLLQLQHD 663 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 L + +K + + + + ++ S I I+ Sbjct: 664 LSQYNPEIKVKNQVGRFRKSDEYEEQGLVIQKNTQVM-DKLMQKFKEGLSPWHINAFISC 722 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK----RINKNTPEINHLMKQ 837 Y +I ++ ++ G++ H I+ ++ ++ P I + + Sbjct: 723 SLKYYFNQIAEIGNSIVVEESLGADKFGSIVHEILEDIYRELSAKHKEIEAPHIEAELPE 782 Query: 838 IIDSHFEKENLPPHIDIIW-------RHLFHKISHSFLEHEE----KIQSSIEKIFVN-- 884 + + EK + + + + L +FL+++ + + E + + Sbjct: 783 VQNRVNEKFLQEEYANYLQTGENFITKKLATNFVTNFLKNQAKEAKENGAPFEILSLENK 842 Query: 885 ---------------IPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNP--- 924 + + + + G DRID + V I DYKTG Sbjct: 843 NRWTDPQEAFSPVLSAQFEAEVNGQVTEVKIKGITDRIDKIGE-KVRIIDYKTGLVEKKD 901 Query: 925 ---KKETAQKLID-------PQLSLE-----AAALKAG----SFSQIDCRKVANLFYIRL 965 + ++L+ QL L ++ G ++ ++ + L Sbjct: 902 VKLSNDDLERLVSDTKADKVRQLWLYKYILSKLIIEKGEYYIGEHKLTEKEPISAGIYSL 961 Query: 966 KQ------KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + + K + + E KS L EI+ + + QP + Sbjct: 962 RNLKEGLLELKSSVKDQELFSETLHEYVHKSEIYLQEIIHNMADETQP--IERTPDINTC 1019 Query: 1020 IQSEYDHLA 1028 + Y + Sbjct: 1020 VYCAYKGIC 1028 >gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] gi|229322085|gb|EEN87873.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] Length = 1120 Score = 214 bits (545), Expect = 6e-53, Method: Composition-based stats. Identities = 127/1067 (11%), Positives = 281/1067 (26%), Gaps = 130/1067 (12%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-------GKKSTILPIIKSLG 82 LV+ SV + ++RA ++R + G ++T P+++++ Sbjct: 78 LVDLAVQKISGGEDPESVLVLTQSRRAATQVREQITAGLLGYEQERGPQATREPLVRTVH 137 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 N P RL+ A + R L I+D P Sbjct: 138 SYAFAVLRLQAAAHGNAPP------RLITGAEQDSVLREMLRGDIEDGALRWPER-LRPA 190 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L D++ EDL L ++ W+ A F + + Sbjct: 191 LGLNGFAVELRDLMLRANERGLGPEDLVKLGKKRGRPEWVAAGRFAEAYEQ--------- 241 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + EA + G+ + AT + +++ Sbjct: 242 -----GVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPELLRSERARIRYLLVDDA 296 Query: 263 DCHIPTAI--WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 P A I + + + + A L + +R + Sbjct: 297 QHLDPQAAQLVRLIGTATAGTVIAGDPDQSVFGFRGADSAFLLGLAERGDERQIVLPTTF 356 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + V S + + + ++ +EA +A LR Sbjct: 357 RNNADVASIAAKIAARLPGNLAHRIAVPSDLTDEDPGRASVRVLGTTAKEAAVVADTLRR 416 Query: 381 SLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLN 435 + + + ++ + ++ L G+ + +A +PL+ S L +L Sbjct: 417 AHLLDGIAWSDMAVIVRSVPRTLAPLRRALLAAGVPVTTAATELPLARQHGVSGLLLVLR 476 Query: 436 AIFKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 A+ L+ P+ R +A S +L Sbjct: 477 ALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELA-------SGSDRDSSELLR 529 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 I ++ +L++ + ++ + + PL + + Sbjct: 530 LILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAWQATGLE 589 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + +L ++ + + + ++ I Sbjct: 590 RRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLAGFVDY----LTSQEIP 645 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672 ++ + + ++ + + + + G+ EG+WP A+ L DL Sbjct: 646 TDSRSRSVITPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALIDLVN 705 Query: 673 ----NLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQR 718 +A + + + A + R + ++ + + SR++ Sbjct: 706 GVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDLVPSRFVDE 765 Query: 719 L----------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------ 756 L + R +L P Sbjct: 766 LIRGDVYADDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPEKHSRAARQ 825 Query: 757 -------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 P E P + S S I+ L P R Sbjct: 826 LARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPLRWVFERHG 885 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 D GTL H L++ + P+ + + + Sbjct: 886 G------SDGDNTHAIAGTLVH----TLVQALAGRIPPDQVEKALENAWESIDLGSQWYS 935 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRID 906 + R ++ +F + + ++ V + + +E + L G DR++ Sbjct: 936 RRELNRTR--EMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLE 993 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 G + D KT NP A + QL+ A G+ + + + + Sbjct: 994 RDTEGRPVVVDVKTARNPVSNEAAQSHA-QLAAYQVAAAEGAIAGEPATQPGGARLVFVA 1052 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + K D + E E + Q + +++ + Sbjct: 1053 KSNKKDGAAQRVQPPLTAEAVEMWRDVIHNAAAATQGPQ--YLARVN 1097 >gi|307611113|emb|CBX00755.1| hypothetical protein LPW_24591 [Legionella pneumophila 130b] Length = 831 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 102/704 (14%), Positives = 220/704 (31%), Gaps = 106/704 (15%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR---FGINIDIS 416 + A +++ E + L + + KK+ ++ + V + R +IS Sbjct: 197 EVFSAKDKKTEYQELMTWLEKKIQQGKKQIGVVVPNLEQESSVLQRILRDCFEPNLFNIS 256 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G PLS S L+ L + A L++ P E Sbjct: 257 LGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFLQRS---------- 306 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + S K + H + L Sbjct: 307 ------------------------DYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKN 342 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ +W +L L + L + ++ + + Sbjct: 343 MNFYPEKT----TLDEWIELFQERLNGIGFPGDDVLNSEDYQCFNRFTMIFDEFRQLSLI 398 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 E + + +LID +P+ S + ILG LE+ FD+L + GL++ P+ Sbjct: 399 SSYLTKKEAFEALKQLIDNTIFQPQKSNSP-IQILGLLEASGCEFDSLWVMGLSDRCLPQ 457 Query: 657 NTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIAS 713 T +PF+ +Q +L + + + A + + +++ E++ P + Sbjct: 458 QTRLSPFIPFELQRELGMPHSIPARELQYAKQILQRLQRGSVETVFSYPQFEDDTPNLPC 517 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + + + + P + + S Sbjct: 518 SLITHYPAYLSRPADNKTNVQS--------------CLVPLEENYEVPVKPDESISGGTS 563 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + P+ A+ LK + + D ++G L H I+ L ++ N+ Sbjct: 564 LLSNQAKCPFKALAQHRLKANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQEQLIKLK 623 Query: 828 TPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 E+ + Q I + P + + +I S+LE E++ + Sbjct: 624 PDELERFIGQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQR-PPFKIT 682 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETAQKLIDPQLS 938 + + + + + DR+D + + + DYK+ G P ++ ++PQL Sbjct: 683 GLEENHSINLAGLDFKV--RVDRLDEVGNKQW-VIDYKSTLPGGKP--WNEERPMEPQLL 737 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKYSADELS 987 L A + ++ L I+LK + I K+ + ++ Sbjct: 738 LYALLNE----------QINTLLLIQLKTGKIKLSGFSEEKWETKEINTLKEDENWEDYR 787 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030 ++ L+ L + +++G P R + ++ +L R Sbjct: 788 QRWLEQLTHLAEEIKSGYCP----PRPQNLTICQRCDFQNLCRF 827 >gi|256005815|ref|ZP_05430766.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 2360] gi|255990216|gb|EEU00347.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 2360] gi|316941648|gb|ADU75682.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM 1313] Length = 1146 Score = 214 bits (544), Expect = 7e-53, Method: Composition-based stats. Identities = 133/1066 (12%), Positives = 291/1066 (27%), Gaps = 172/1066 (16%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106 + + VP + Q R I + G + + S + F ++Y P + + Sbjct: 34 LVLLVPEQFTFQAERD-LISVLGTGGILKTEVLSFSRIAYRTFNEAGGITY---PHIHSA 89 Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166 + + L R++ + + A+ L+ +I + Sbjct: 90 GKCMILYRILDKMK-------------GSFRVFSKTADRQGFVNTLSTLITEFKKYNVTP 136 Query: 167 EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 EDL + E + L + + + E P + + Sbjct: 137 EDLEKVSKELEEDNPMKEKLMELTAIYDLFEKTIAERYR-DPDDDLTLAAKKL-GSIPLY 194 Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 I I G TG P +++ + + D + ++ Sbjct: 195 DGAEIWIDGFTGFTPQEYQIIGQLMKKAQRVNISFCTD--------------CLDGDLND 240 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 T + + + KL+ K G + F + Sbjct: 241 TDIFSSIKTAYRKLVK-------MAKENGIPVEPSVVLNSKPLFRFSQSPELSHLEQYLY 293 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARR 401 + D++L + N E + A + + ++ A++T + + + Sbjct: 294 AYPYKTYNEKTKDISLFSSVNMFAEVEACARDIVRLCRDRGMRYREIAVVTGNLDGYEKL 353 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ + +GI I + + ++ S+L+ + + A+ +K L Sbjct: 354 IEAVFSEYGIPCFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGID--- 410 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + + LE L + + + EE KEL Sbjct: 411 ---RESIDRLENYVLACGIRGSCWTETEEW---------KMVPELIPNEKSLEEAKELLE 458 Query: 522 LLVDHILQCITPLVTYK----TNKNSTCGNLSISDWTKLT-----VTCLQNVCLDEHRKL 572 + Q + PL+ ++ K ++ S+ D+ + + Sbjct: 459 DVNRIRAQVVAPLMEFRKKTKGRKKASDFCASLYDFLCTLGIPEKIEDAIEKFRESGNLN 518 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + + + +F +E ++ I+ + + + Sbjct: 519 LANEYSQVWNAVMEVFDHTVEVMGDETFGIEKFARILEIGFGECKIGLIPASLDQVLVGS 578 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAA 685 SR L + G N+GV+P + LS ++ +L T + Sbjct: 579 LERSRSHEIKALYILGANDGVFPPAVMEEGILSDQDRAVLNNAGIELASDTRTQAFDGQY 638 Query: 686 HDFEMANGT-RHLIYTRS-LRENNIPTIASRWLQRLLVL--------------GGTDFFD 729 + +L + S S + RL L + + Sbjct: 639 LIYRALTTAGNYLRISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEEEME 698 Query: 730 NLKKRGQCYLDWTRKLDYTT---KQPHYKRPKPFPPLEAQPRTY---------------- 770 L + L + + Sbjct: 699 LLSGNSPAFKSMVSALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKNLAQ 758 Query: 771 -----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S S +++ P+A Y + L D GT H Sbjct: 759 PVSREKIAALYGEPAVSSVSRLEKYTACPFAFYVQYGLGAKERQ--IYSLRPPDVGTFMH 816 Query: 814 NIITELIK-------KRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRH-LFHK 862 +I + + + + + + +I+D EK + + Sbjct: 817 AVIEKFSRMVAKRNISWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLRLKR 876 Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID--LL 908 + +L E +SS E + + + ++S IHLTG DR+D Sbjct: 877 VVARAVWLIAEHIRRSSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDALKT 936 Query: 909 KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ-IDCRKVANLFYIRL 965 + G + I DYK+G K + QL AL + + + Y ++ Sbjct: 937 EDGTYLRIVDYKSGGKDFKLSDVFYGLQIQLITYLDALWESGEADENNPVLPGGVLYFKI 996 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLI---------EIVTLLQ 1002 D I + + +E+ + +K L +++ + Sbjct: 997 D-----DPIIRGNGRMTEEEIEKAIMKQLRMKGLLLADVKLIREMD 1037 >gi|125974532|ref|YP_001038442.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium thermocellum ATCC 27405] gi|281419056|ref|ZP_06250073.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20] gi|251764585|sp|A3DH20|ADDB_CLOTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|125714757|gb|ABN53249.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium thermocellum ATCC 27405] gi|281407205|gb|EFB37466.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20] Length = 1146 Score = 214 bits (544), Expect = 7e-53, Method: Composition-based stats. Identities = 133/1069 (12%), Positives = 291/1069 (27%), Gaps = 178/1069 (16%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106 + + VP + Q R I + G + + S + F ++Y P + + Sbjct: 34 LVLLVPEQFTFQAERD-LISVLGTGGILKTEVLSFSRIAYRTFNEAGGITY---PHIHSA 89 Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166 + + L R++ + + A+ L+ +I + Sbjct: 90 GKCMILYRILDKMK-------------GSFRVFSKTADRQGFVNTLSTLITEFKKYNVTP 136 Query: 167 EDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 EDL L+ + L + + + E P + + Sbjct: 137 EDLEKVSKELEEDNPVKE---KLMELTAIYDLFEKTIAERYR-DPDDDLTLAAKKL-GSI 191 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 I I G TG P +++ + + D + Sbjct: 192 PLYDGAEIWIDGFTGFTPQEYQIIGQLMKKAQRVNISFCTD--------------CLDGD 237 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 ++T + + + KL+ K G + F Sbjct: 238 LNDTDIFSSIKTAYRKLVK-------MAKENGIPVEPSVVLNSKPLFRFSQSPELSHLEQ 290 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-L 398 + + D++L + N E + A + + ++ A++T + + Sbjct: 291 YLYAYPYKTYNEKTKDISLFSSVNIFAEVEACARDIVRLCRDRGMRYREIAVVTGNLDGY 350 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + ++ + +GI I + + ++ S+L+ + + A+ +K L Sbjct: 351 EKLIEAVFSEYGIPCFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGID 410 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + LE L + + + EE KE Sbjct: 411 ------RESIDRLENYVLACGIRGSCWTETEEW---------KMVPELIPNEKSLEEAKE 455 Query: 519 LAVLLVDHILQCITPLVTYK----TNKNSTCGNLSISDWTKLT-----VTCLQNVCLDEH 569 L + Q + PL+ ++ K ++ S+ D+ + + Sbjct: 456 LLEDVNRIRAQVVAPLMEFRKKTKGRKKASDFCASLYDFLCTLGIPEKIEDAIEKFRESG 515 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + +F +E ++ I+ + + Sbjct: 516 NLNLANEYSQVWNAVMEVFDHTVEVMGDETFGIEKFARILEIGFGECKIGLIPASLDQVL 575 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIG 682 + SR L + G N+GV+P + LS ++ +L T + Sbjct: 576 VGSLERSRSHEIKALYILGANDGVFPPAVMEEGILSDQDRAVLNNAGIELASDTRTQAFD 635 Query: 683 QAAHDFEMANGT-RHLIYTRS-LRENNIPTIASRWLQRLLVL--------------GGTD 726 + +L + S S + RL L + Sbjct: 636 GQYLIYRALTTAGNYLRISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEE 695 Query: 727 FFDNLKKRGQCYLDWTRKLDYTT---KQPHYKRPKPFPPLEAQPRTY------------- 770 + L + L + + Sbjct: 696 EMELLSGNSPAFKSMVSALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKN 755 Query: 771 --------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 S S +++ P+A Y + L D GT Sbjct: 756 LAQPVSREKIAALYGEPAVSSVSRLEKYTACPFAFYVQYGLGAKERQ--IYSLRPPDVGT 813 Query: 811 LFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRH-L 859 H +I + + + + + + +I+D EK + Sbjct: 814 FMHAVIEKFSRMVAKRNISWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLR 873 Query: 860 FHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID- 906 ++ +L E +SS E + + + ++S IHLTG DR+D Sbjct: 874 LKRVVARAVWLIAEHIRRSSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDA 933 Query: 907 -LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ-IDCRKVANLFY 962 + G + I DYK+G K + QL AL + + + Y Sbjct: 934 LKTEDGTYLRIVDYKSGGKDFKLSDVFYGLQIQLITYLDALWESGEADENNPVLPGGVLY 993 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI---------EIVTLLQ 1002 ++ D I + + +E+ + +K L +++ + Sbjct: 994 FKID-----DPIIRGNGRMTEEEIEKAIMKQLRMKGLLLADVKLIREMD 1037 >gi|251796230|ref|YP_003010961.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2] gi|247543856|gb|ACT00875.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2] Length = 1175 Score = 214 bits (544), Expect = 8e-53, Method: Composition-based stats. Identities = 105/1018 (10%), Positives = 256/1018 (25%), Gaps = 132/1018 (12%) Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + P+I + + + LL +L+ + + L RL Sbjct: 20 DAIRAKLQGEPDGAPLIMLVPEQATFQTEYALLKDTSLSGTIRA--QALSFRRLAFRVMQ 77 Query: 122 KLPDIIKDLYPE---------------SPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166 + + L L S A + L +++ + Sbjct: 78 ETGGTALIPISDNGKHMMLFKIIHRLGKQLELFQSGAEQPGFIERLGELLTEWKRYGIDA 137 Query: 167 EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 L + L++ + L L + + A + Sbjct: 138 NLLKEKTASVEDSTLLDRKLHDLRLVYDKLEQEL--LGLYIDSEDYLTQLIAGYAYAPAM 195 Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + I G G P + T+ V LD E + + Sbjct: 196 QGAHLWIDGFHGFTPKEYDALGTLIASSAEVTVALTLDRPYDN------GEMPHELELFH 249 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 T T+ L+ L + D LG + + S +++ Sbjct: 250 PTAETY--GKLSALAAQAGVSVYDTVVLGEGAPTRFLGSTMLAHLEKHYGGRTPMLIPDK 307 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRNLARR 401 + + C ++L + N R E + A + R + + ++ Sbjct: 308 KMLAVDSPAC--GLSLHASANRRAEVEAAARDMVRRAREEGLRWRDMAVMVRNAAEYTDY 365 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ + I + + S L + + A+ +K L Sbjct: 366 IQTIFDDYEIPYFLDQKNNTVHHPLVEFIRSALETVLHGWHYEAVFRCIKTELLFPIDGS 425 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + LE L + + +D + ++ S ++ + + + Sbjct: 426 MS-RELFDRLENYVLAAGVDGWKWLDRSRWKPFMQQSLEDEPDTVSEPSAKAKREFQAIM 484 Query: 522 LLVDHILQCITPLV-------TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + I+ + K + L +D + + Sbjct: 485 AAREAIVPPLRRFEQSLKKASNVKDMCEALYKLLDHADAADRLERWSREDSASGRTQRAR 544 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + L +++E + ++ ++ + I Sbjct: 545 S-HRQLWDGVMQLLDQLVEMVGDEDMPPELFAGMVETGLENLKLAAVPPALDQALIGSMD 603 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDF 688 +R + + G N+GV P ++ L+ + L + + Sbjct: 604 RTRSGDVKICYVLGANDGVMPMRIQEDGVLTEQERERLAEEGLVMAPGVRRRLLDERFLI 663 Query: 689 EMAN--GTRHLIYTRSLRENNIPTI-ASRWLQRLLVL--------GGTDFFDNLKKRGQ- 736 A ++HL + + + T+ S ++++ L + ++ Q Sbjct: 664 YNALTTASQHLWISWAQADEEGKTLLPSEVIRQVRQLFPGIPVYQKAGEPTPGMETGDQR 723 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------------- 770 + PF Sbjct: 724 SYIEHPQRTLAYLITELRAWRQGSEIAPFWWDVYNWFAIRPEWQDKLQLMNASLSFSNQE 783 Query: 771 ------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 S S +++ ++ P+ +A L+L + D G LF Sbjct: 784 TVLTTTTAEQLYGTKLKASVSRMERFVSCPFQHFAIHGLRLRERQM--YRLEAPDVGQLF 841 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKIS 864 H ++ L + +++ ++ +I Sbjct: 842 HAALSRLAGGVGQRWGSMPEAQIREAAAKAVDELAPRLQSQILLSSGRFQYIARKLKEIV 901 Query: 865 --HSFLEHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHLTGFADRIDLLKSGF 912 + + E ++ + + + + + I + + G DR+D ++ Sbjct: 902 AQAAVILSEHSRRAQFQPVGLEVDFGPDGTLPSLVIPLDNGGTMEIIGRIDRVDAAETEE 961 Query: 913 ---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965 + + DYK+ K E + Q+ L + + A + Y + Sbjct: 962 GLLLRVLDYKSSATQLKLEEVAFGLSLQMLTYLDVLVTHASEWLGKPASPAGVLYFHV 1019 >gi|300771530|ref|ZP_07081405.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761519|gb|EFK58340.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 979 Score = 214 bits (543), Expect = 1e-52, Method: Composition-based stats. Identities = 134/1104 (12%), Positives = 317/1104 (28%), Gaps = 220/1104 (19%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF +E+ L+ L I KR L EI K Sbjct: 3 PFLKEVAEDLVAKFG-----------DHLQDCAIIFNNKRPATYLNQYLSEIYQ-KPFWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P + ++ + + ++ Y + L L K ++ P Sbjct: 51 PSVFTIQEFFAQSTNLNIADFY---------TQFFTLFNLYNELLIKESGKQIEMDKFFP 101 Query: 136 -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 LS A L ++ I ++++ L +++ +W Sbjct: 102 VAKTILSDFGQIDMDNVEADRLFKELEDIAVINQQFDFLTEEQHQFLSRFW--------- 152 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARL 245 + + ++ + G T +L Sbjct: 153 ------------TSYTEGKHKRQQENFIRMWRRMPLLYRLFHDALKAKGLTTMGQIYRQL 200 Query: 246 MSTVANHPN-------GAIVLPGLDCHIPTAI-----WNTITEKSTNITSSNTTYSTHPQ 293 ++P G I+L G + T W + + + Sbjct: 201 AHQTCSNPQFVNNFDKGRIILVGFNALSQTEAIIFKRWQDQGKTLFYFDTDS-------- 252 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 Y L L + L + NE+ + +I++ P Sbjct: 253 YYLNDPLHEAGLFLRKNIDLYGLKNELNNQRSLINELTTPT------------------- 293 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTR 408 + + + +A + L ++ K+ + ++ AD +L + Sbjct: 294 ------TVYKVQGQTTQAKILNQVLSEDYEQLKQDPSYGQTVIVLADESLLLPTLQTIPS 347 Query: 409 FGINI----DISAGIPLSTTLHSSILTSL----LNAIFKL------NDFMAIATLVKHPL 454 +I +++ G+ +++ + ++ + + + + HPL Sbjct: 348 DEQSIQVNLNVTMGLGYTSSSLFGLADLWLSHQVDMMNTRSAEELNVPYRTVEKFLTHPL 407 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 ++ A E + + + + ++ + Sbjct: 408 IAVDEKKRTQVLAAFVKEQLVVIPLERLVQQKGIFQFFFQKVTDPLS------------- 454 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 L + + L + + ++ T+ L + + + Sbjct: 455 --------LTRELKSLLEYLAKRHLEQQNLRQLD--AELFVKTIQELNRMHDTLAQHIQT 504 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 S +I + ++ +V + S L ++G L Sbjct: 505 ---------------------SGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLL 543 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NG 693 E+R LNFD +++ GLN+G+ P+N+ N F+ ++ L E +A+ F Sbjct: 544 ETRNLNFDHVVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPVLENQDAISAYIFYRLVQR 603 Query: 694 TRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + L + SL + + SR+L++L +F + + Q Sbjct: 604 AKKLSFVYNSLTDESNTGEPSRFLKQLEFESNFEF----RYQDQHLQIKVEDQQELVIPK 659 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + RT S S + I +P + + + ++ + + + GT+ Sbjct: 660 TTAIMDKLGLYLSGERTLSASALTTYIANPIDFFYKYVAEISEPEEVNEVVEANNLGTIL 719 Query: 813 HNIITELIKKRINKNT-------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 H + + + ++ + + ++I+ +F KE P + I ++ Sbjct: 720 HGTMEDFYNQLKAESNFISPERIAQKRKELSKLIEHNFIKEFYPENTKKIHFTGIQRVIM 779 Query: 866 SFLEH-------EEKIQSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSG 911 + ++ ++ + + + + E IH+ G DR+D+ + G Sbjct: 780 AIVKEYIHIILDHDERAAPFTILQMEEEMTVPFEFNDSNGRKQVIHMKGIIDRVDIGQDG 839 Query: 912 FVDITDYKTGDNP-KKETAQKLID----------PQLSLEAAALKAGSFSQIDCRKVANL 960 I DYKTG + ++ ++ + Q + I + Sbjct: 840 VTRIVDYKTGSDELDYKSLEEAFNTDGKKLNKALVQTLFYTYVFEKA--KNIKNVEPN-- 895 Query: 961 FYI--RLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVT----LLQNG 1004 Y+ ++K + + + + + ++ L + Sbjct: 896 LYVVRKMKNGGTLFQTKVEFTDDKNKVKKADQDLSGDFLAEEKERFAHLLASKLQELFDP 955 Query: 1005 EQPFISHLRLSEKSNIQSEYDHLA 1028 + PF + ++ I S Y L Sbjct: 956 QVPF--RVSQHSENYIFSPYKSLM 977 >gi|319650047|ref|ZP_08004196.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. 2_A_57_CT2] gi|317398228|gb|EFV78917.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. 2_A_57_CT2] Length = 1168 Score = 214 bits (543), Expect = 1e-52, Method: Composition-based stats. Identities = 117/967 (12%), Positives = 263/967 (27%), Gaps = 145/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------WWLLAADFLK 189 L L A+ + + ++ + ++L + ++ L+ Sbjct: 107 LKLFQRAADKNGFIQQIEQMMTEFKRYCVAPDELAE-RQQQLSGTGKSNKALQDKLHDLE 165 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + K + E L + L+ +A H + I G P ++ + Sbjct: 166 LIYKNFEESLA--GKYTDSEDYFRLLAEKASHSEYLKNAEVYIDGFYSFTPQEYSIVEQL 223 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + LD + + + T + L I+ Sbjct: 224 MKQCKNVTITLTLDKQFKHSATEELHLFRMAGENYQTIKE-------MASRNRLGIE--- 273 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 MVI++ S +++ +D+ + +A N R Sbjct: 274 --------------EMVITEQKRWCSPSLRHLEAHFDSRPAEAFLGEADIHIGQAVNRRA 319 Query: 370 EAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTL 425 E +A + + + + A++ + ++ ++ + I I + Sbjct: 320 EIEGVARKINKLVRTDGYRYRDIAVLARNGQDYHDMIETVFHDYEIPFFIDQKRTMLNHP 379 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYD 484 ++ S L I + I VK L L + LE L Sbjct: 380 LVELIRSTLEIINGNWRYEPIFRAVKTELIFPSKLNAGKLREQMDRLENYVLAYGIQGDK 439 Query: 485 IMDLKSLVLDRIATQK-NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 K + RI + + R+ +E +L ++ IL+ L + Sbjct: 440 WTKKKRWIYRRIRGLEFEAVAQTDSEKRIEDELSDLREMITGPILRLHRRLKKAADGRGY 499 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + + V + +E + + + + L + +E + Sbjct: 500 CEALFLYLEELDVPVKIEKWKSAEEEKGNLVKSREHGQAWNAIMELLDQYVEMLGEEEVT 559 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + ++ ++ + SRL + + GLNEGV P +++ Sbjct: 560 LKRFASVLDAGLESLRFTLVPPAIDQVMAADLERSRLTDIKAAFVIGLNEGVIPAKFSED 619 Query: 662 PFLSRVMQSDLN------------LKTAEKYIGQAAHDFEMANGTRHLIYTRS-LRENNI 708 L+ + LN E++I A + L + E Sbjct: 620 GVLADDDREILNTNGMKLAPGSRTRLLDEEFIAYKAF----VTPSEKLFISYPLANEEGK 675 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCY-----LDWTRKLDYTTKQ------------ 751 + S +++RL L + L++ L+ Sbjct: 676 ALMPSPYIKRLGDLFPDCRQHSFMSDPAELPETEQLEYADNLNTALSYLTSQLQLKKRSY 735 Query: 752 ----------------PHYKRPKPF-------------------PPLEAQPRTYSFSEIK 776 ++RP L S S ++ Sbjct: 736 PIYDLWWDVYNCYLNNEQWRRPALKVLSSLNYENRTLQLGADISKELYGDHIQASVSRME 795 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINH 833 + P++ +A+ L+L + D G LFH + + + + + T Sbjct: 796 LFHSCPFSHFAQHGLRLRERQ--VYRLEAPDIGDLFHAALKFIAETVMTQKLSWTDMTRE 853 Query: 834 LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883 + + E + + +I ++ E S + + Sbjct: 854 QCEILAKEAVEMLAPKLQNEILLSSNRHHYIKRKLEQIISRASYVISEHAKSSGFSPVGL 913 Query: 884 NIPA--KMAIESIGIHLT--------GFADRIDLLKS--GF-VDITDYKTGDNP-KKETA 929 + K + S+ L G DR+D + G + + DYK+ Sbjct: 914 ELGFGPKGELPSLVFPLKNGTKMELVGRIDRVDKAQDTNGTFLRVIDYKSSSKDLNVSEV 973 Query: 930 QKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 I Q+ + + A + Y + + I + K + +++ + Sbjct: 974 YYGIALQMLTYLDIIIAHSNSLIGTEADPAGVLYFHV-----HNPIVSTSKMLTLEDIEQ 1028 Query: 989 KSLKNLI 995 + K Sbjct: 1029 ELYKKFK 1035 >gi|157825678|ref|YP_001493398.1| hypothetical protein A1C_03000 [Rickettsia akari str. Hartford] gi|157799636|gb|ABV74890.1| hypothetical protein A1C_03000 [Rickettsia akari str. Hartford] Length = 888 Score = 214 bits (543), Expect = 1e-52, Method: Composition-based stats. Identities = 135/727 (18%), Positives = 254/727 (34%), Gaps = 91/727 (12%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EEA IA K+ A+IT + L R L R+ Sbjct: 204 PASKRISDCISYYEPNDIYEEAQQIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDRY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRA 467 + G L T +LTS++ + D + L+K+PL + + Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLISNPTQLNSENFRQN 316 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + + + D + L+L ++ +E+ KE L+D + Sbjct: 317 EFKSKSAERTISSFVNDAVQKLELMLSNKNRFISSPQYLLQLQFDNEDTKEYCRNLIDIL 376 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + +I D LT + + P +W +E G L+ Sbjct: 377 F---------------SDNPHNILDILTLTKEIAEKLL-------PTIWEKEGGAELAEF 414 Query: 588 FSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + + ++ I + L+ K S+++ I + L FD +IL Sbjct: 415 LTNLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDSTSITIGAPEDLALCAFDFIIL 473 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 N W +P+LS LN+ E + F + + +I + + + Sbjct: 474 PHFNNENWTPTAKAHPWLSNKALQILNIDYNEITPTLYSDYFNLFLQNKQVIILNAKKYD 533 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 ++ S L + LD T +P + Sbjct: 534 GKLSVPSNLFLMLQN------VIPIPYYVIPRLDRGSHKIIDTVIKPRYDNRPTAQSTSF 587 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----K 822 P S ++I+ LI +PY YA++IL L + ++P +D G H ++ E K + Sbjct: 588 PSVLSVTDIETLIRNPYGFYAKKILGLRPKDNIWEEPKISDFGNFIHKVLEEYSKNYDKQ 647 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 +N N + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 648 YVNLNLLDKQAALINIGNHILYGTILPTYTKKTWQIKLTAFSKAFILFDIERRKNCKEIY 707 Query: 883 VNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 ++ I I + G ADRI++ KS + I DYKTG P K++ + + PQL +E Sbjct: 708 FETNGELRLNIAGQDIKIIGIADRIEISKSNNITIMDYKTGTIPTKKSIELGLSPQLIIE 767 Query: 941 AAALKAGSFSQID--------------------------CRKVANL------------FY 962 + L F D +V+N Y Sbjct: 768 SLMLLENGFITFDVTPWLDHGVHKKIKKDWIPRSSREMMEVEVSNATRPNNGNPEISIAY 827 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 +++ + + + E K LI ++ + F L LS+ + Sbjct: 828 VKITS---TEPYVQTMEIALSIETLNKHKAGLIRLLEYYVT-NKSFSYDLNLSK----YN 879 Query: 1023 EYDHLAR 1029 +Y HL R Sbjct: 880 DYLHLIR 886 Score = 66.5 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ V I +P + EL + K LP Sbjct: 7 FLKSFAEYIIDKLAKG------------TEVQIILPNNCSCLELTKILADQYNIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 I ++ ++ +D VS I+ LL ++++I +++ + + L Sbjct: 52 SIIPFNSLMSKQTDSDY---------VSKIEELLIISKIITEYKDLQCNKHESLKA---- 98 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 AK L + + + + ++ +W FL+ W Sbjct: 99 ------------AKILRKLFNDLIINNID---IKLIEIYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 E + + Y++ L+ AE + II+AG Sbjct: 144 EEISFTQKQTKASYKLKLLHAEIIRIKN-RNKQIILAG 180 >gi|226314560|ref|YP_002774456.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599] gi|226097510|dbj|BAH45952.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599] Length = 1165 Score = 214 bits (543), Expect = 1e-52, Method: Composition-based stats. Identities = 139/1052 (13%), Positives = 296/1052 (28%), Gaps = 156/1052 (14%) Query: 53 TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 ++ LR K P+I + + + L L + ++L Sbjct: 19 HRQMQARLRE--------KPLGSPMILLVPEQASFQEEYALATLPELGGVIG--TQVLSF 68 Query: 113 ARLILIWRNKLPD----IIKDLYPESPLSLPIS-----------PANAIWLAKNLADIID 157 RL +L D + DL L + + A A L +I Sbjct: 69 GRLAHRLMQELGDLTTVPVDDLGKHMVLRMLLERHKEELNVFGRSATQPGFAAQLGRLIS 128 Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 ++ + H+ E G L++ + L E + Sbjct: 129 ECKSYGVSFT--HSENVEWGGANLNQKIHDLRLIMNAYEAYLSE-GYCDADDILNRVATM 185 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + + + I I G TG RL+ + H + LD + A + + Sbjct: 186 VRDSMYI-KQAEIFIDGFTGFTNQELRLIEQLMQHAKQVTIALTLDPNERDASVDELGLF 244 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 HP + L + + + + S +L Sbjct: 245 -------------HPTLRTYQALTLMARESGVSIAKPLL---LTEAQRFKSSPWLRQVEQ 288 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALIT 393 + IP+ +V ++ A N R E ++A+ L R K + L+ Sbjct: 289 VYFQW--GDPPIPDQPGRADEVTMLSAVNRRAEVEAVALKLLTLSREEGYRWKDMAILLR 346 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 A + T +GI + + ++ S L I + A+ +K Sbjct: 347 EIGTYADEISAVFTEYGIPHFLDQKRSVMHHPLVELVRSALEVIVTRWRYDAVFRCLKTD 406 Query: 454 LAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 L E + + LE L Y + A + + + + + Sbjct: 407 LLLLDITDEHTARKEIDRLENYVLAHGVFGYQWAEESPWHFRGQAGAEEDAQIDELRRKY 466 Query: 513 SEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + + + + + + W Q ++ Sbjct: 467 AAPLLSFEKEMKQATGLNVQEMTLALYNLLIALDVPNKLEHW--------QRKAENDGDL 518 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + L L +++E N + ++ ++ + + I Sbjct: 519 DAAQVHGQVWTGLIELMDQVVEVMGDESMNLATFARVLDSGLETIELGLVPPALDQVLIG 578 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685 SR + L L G+NEG+ P + L + L +A++ + Sbjct: 579 AMERSRQPDVKALFLLGVNEGIIPLRPKEEGILDEAERERLAEMGMSLAPSAKQKLMAEP 638 Query: 686 HDFEMANGTR--HLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDF--------------- 727 + A LI + +L + + S R+ + Sbjct: 639 YLLYQAMTRPSERLILSCALADEEGKALLPSSVFTRIREVLPDIPHQVFYNEPTGQYETD 698 Query: 728 ---FDNLKKRGQCYLDWTRKLDYTTKQP--------HYKRPKPFPPLEAQ---------- 766 + ++ + L R + T + P Y R P E Sbjct: 699 AFLLGHPRRVFRHLLTLLRSMKKTGELPDFWWEVYDWYIRASPDVKREQWLLSGLRYFNR 758 Query: 767 ---------------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S S +++ + P++ ++ L+L +R D G L Sbjct: 759 PQELDLETSTTLYGKQLKMSVSRLERFQSCPFSHFSSHGLRLAER--TMYKLERFDVGEL 816 Query: 812 FHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----F 860 FH + ++K N + + + ++ + R+ Sbjct: 817 FHASLKRAVEKMNEDNLEWSKLTEDNSMQLANVVVEELVPATRSSILTRTARYRYLSGKL 876 Query: 861 HKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESI-GIHLTGFADRIDLL 908 + ++ E +S + + + + +E+ + L G DR+D Sbjct: 877 KRAVGRAIYVLGEHAKRSRFAPVGLEVSFGPNSDLPGLALTLENGVELQLIGRIDRVDQS 936 Query: 909 KSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYI 963 + + DYK+ ++ QL + + A + + ++ +FY Sbjct: 937 LDSEVPYLRVIDYKSSPKQLSLSDVWNGLNLQLLVYLDVVVANAEEWLGKKAEMGGVFYY 996 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 ++ D K+ +ADE +++ K L Sbjct: 997 QVA-----DPFVTAKRLLTADEAAKERAKRLR 1023 >gi|291549062|emb|CBL25324.1| ATP-dependent nuclease subunit B [Ruminococcus torques L2-14] Length = 1146 Score = 213 bits (542), Expect = 1e-52, Method: Composition-based stats. Identities = 123/932 (13%), Positives = 258/932 (27%), Gaps = 141/932 (15%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209 + +I +E L + + ++ + + + L + + Sbjct: 144 EVKSVISEFTQYGIDFEQLDSFMEGLNPESYLYYKLKDIRKVYEGFEDYLRDKYIT--KE 201 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + ++ I + G TG P RL+ + + ++ +D Sbjct: 202 ELLDVLSQAVPEAKMLKDSVIAMDGFTGFTPVQNRLIGELLKVCDKIMLTVEIDRREDPF 261 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS-NEMYGRSMVIS 328 ++ HP Y L L + +V + V +E S Sbjct: 262 VYK------------------HP-YQLFALSKQMVTSLTEVAQEVRVEIDEPVWLCKNPS 302 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 F ++ + ++L E +EEA +A +R + E Sbjct: 303 YRFKENPEMAFLEEELFRYSRRKYSGEKMRSISLHEVHTPQEEAQYVAEEIRRLVREEGY 362 Query: 387 --KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 ++ A+I +D + R+ I + + + L SLL + + + Sbjct: 363 RYREIAVIASDLSTYADALEKACDRYEIPVFMDHKKSILLNSFVEYLRSLLVMVEQNYTY 422 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 ++ ++ L F E D+ K + T Sbjct: 423 ESVFRYLRTSLCGFTRDEVDRLENYCLAL-----------DLKGFKKWDQVWVRKTPMTT 471 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKL 556 +E+ E L ++ +TPL T + T ++++ + + Sbjct: 472 ----------KEELEELNHLRMRFVEKLTPLHTVLKKRKKTVKEITLAVYEYLVQEKIQE 521 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L+ ++ + + + + LF K +E + E+ +++ ++ Sbjct: 522 QLAELEQKFQEDGELALAKEYAQIYRIVLELFDKFVELLGEEEIPLKEYCELLDAGLEEA 581 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 V + I +R+ N L G N+ + P N LS + Sbjct: 582 KVGVIPPSLDQVVIGDMERTRIKNIRALFFVGANDTLLPGNAGARGLLSERDRKQFQEKK 641 Query: 674 ---LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVL----- 722 ++ + M L + + + +Q L+ L Sbjct: 642 MNLSPGPKEKLYIQKFYLYMNLTKPSELLYLSWAKVSGEGKALRPAYLIQDLMRLFPVLV 701 Query: 723 ----GGTDFFDNLKKRGQCYLDWTRKLDYTT----------------------------- 749 D+ R L L Sbjct: 702 PVEEDRKGLLDHEMMRKSGLLQIAEGLREREHGLDDSWKELYRWFVKDEQSQETLKQMIE 761 Query: 750 -----KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 K + L P+ S + +++ + YA + L+L K + Sbjct: 762 AGFYRKDEPSLGSRVAKELFLDPKRVSVTRLERFASCAYAHFLNYGLRLSERE--KYGFE 819 Query: 805 RTDRGTLFHNIITELIKKRINKNTPE---INHLMKQIIDSHFEKENLP--------PHID 853 D G + H + K + +++ID E+ L + Sbjct: 820 AMDLGNIAHQALERFAHKVEEEGLDWVTMPEEKRERLIDESVEESILDYGNTVLFSSARN 879 Query: 854 IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 H ++ + + ++ +G DRID + Sbjct: 880 EYMIHRIKQLINRSVWALTQQMAAGDFVPSGCEFKFG----------SGKIDRIDTCEDE 929 Query: 912 FVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRL 965 +TDYKTG + QL + A + ++V A +FY R+ Sbjct: 930 NAVYVKVTDYKTGRKAFDITAFYHGLQMQLPVYLNAALEIERQKNPEKEVLPAGIFYYRI 989 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + T + + S L E L LI Sbjct: 990 QDPIVKKEETKAEVEQSI--LKELKLDGLINA 1019 >gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792573|gb|ADJ42948.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 1057 Score = 213 bits (542), Expect = 1e-52, Method: Composition-based stats. Identities = 132/1044 (12%), Positives = 261/1044 (25%), Gaps = 127/1044 (12%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG---------KKST 73 ALL + +P V + ++++ LR++ ++ Sbjct: 39 TALLASAATRRIA-EGADPES---VLVLTTSRKSADALRADITRRLTADPEQARPLPRTV 94 Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133 P+++++ + + P RLL A ++ R L + + Sbjct: 95 REPLVRTVHSYAYSLLRLEAMAEELPPP------RLLAGAEQDVVVRELLAGDLDEEAEY 148 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 P L + A+ L D++ DL L + W+ A F + Sbjct: 149 WPEQLRPALL-VPGFAEELRDLLMRAAERGLGPGDLAELGRRRGREEWIAAGQFWAQYEE 207 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 + NA + S + Sbjct: 208 VTQLQGAGGNALGVA--------------SAPALDAAELVTSALLALEDDDELRERERTR 253 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + + P T +S L + Sbjct: 254 VRHLFVDDAHHLDPLQTSLVRMIGHTAAEFVVAGDPDQNVFSFRGADARLFADADPDGSR 313 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + + + + + + +P V + EA Sbjct: 314 TVTLTTAHRLAPAVRLAVAKIGAT-LPGASPHRKIVPPAGASGGTVRVRVMPTPAAEASW 372 Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-----IPLSTTLHSS 428 IA LR + + + I R L L R + G +PL+ Sbjct: 373 IADQLRRAHLVDGVPWSEIAVLVRSPARTFLVLQRALRAAGVPIGSATEELPLAKQPAVR 432 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L ++L + A G L R + L + L G Sbjct: 433 PLLAVLKLAPSPELLDIDLAEMLLSSALGGADPLALRRLRRGLRRLELAGGGQRSS---- 488 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + L++ + E + + + + + Sbjct: 489 -------DELLVEALRGGDILAGLADAEAEPVRRVGGLLRVTHQAVARGEGVEQVLWQLW 541 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + +L + + + S A + Sbjct: 542 RESGLQDKLLKQAERGGSLGAQADRDLDAVVALFDAAGRYVDRLPRSSV----ASFADYL 597 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + I G+T+ P S + +L + + + + G+ EG WP + L Sbjct: 598 GAQRIAGDTLAPAAVPSDGVSLLTAHAAAGREWTVVAVAGVQEGAWPDLRLRGSVLGVER 657 Query: 669 QSDLNLKTAEKYIGQAA--------HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 DL + + Q A + + + + ++ + SR+L L Sbjct: 658 LKDLMAGVDDDAVSQTAPILAEERRLFYLAMSRAKQTLLVTAVSGEDE--QPSRFLDDLE 715 Query: 721 VLGGTDFFDN----LKKRGQCYLDWTRKLDYTTKQP------------------------ 752 G D + R + +L Sbjct: 716 ENGADDGGLDSRMKPPGRSLVLAELVGELREVVCDDKADPARRRRAAKQLARLAEARVPG 775 Query: 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 +P P S S ++ L P R D Sbjct: 776 AHPSTWYGLLPASSDEPVHPPGD-LIRISPSTVEILTKCPLRWMIERHGGSDPAQ----- 829 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 GTL H L + + +T + R + Sbjct: 830 -LAAVTGTLVHG----LAQAVASGSTDAELQAALDEAWVRVDAGAPW--FSRRERRRVEQ 882 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITD 917 + +F E+ + +++ V ++ + + + L G DR++L G I D Sbjct: 883 MLRNFTTWLEQSRKELKEAGVEQDIEVELPAGSEDEVRVLLRGRVDRVELDAEGRPVIVD 942 Query: 918 YKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 KTG P A+ PQL+ A+ G+ A L Y+ K Sbjct: 943 IKTGKVPVSGAEAEAH--PQLAAYQLAVLLGAIEGRTEAGGARLVYV---AKANNKTGAT 997 Query: 977 DKKKYSADELSEKSLKNLIEIVTL 1000 ++ + DE+ K L++ Sbjct: 998 ERSQPPLDEVGGKQWLELVQKAAA 1021 >gi|17545908|ref|NP_519310.1| hypothetical protein RSc1189 [Ralstonia solanacearum GMI1000] gi|17428203|emb|CAD14891.1| probable homologous recombinational repair protein [Ralstonia solanacearum GMI1000] Length = 962 Score = 213 bits (542), Expect = 1e-52, Method: Composition-based stats. Identities = 151/962 (15%), Positives = 284/962 (29%), Gaps = 107/962 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +D + + VPT I +R Sbjct: 5 AFAPGPAFLPHAADA-------AWRFFDAHATDAPGAGVVVVPTAAQIPGVRGALHASAQ 57 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125 +LP I +LG + DL L S + RLL + + + W + Sbjct: 58 AAGALRLLPRILTLG-----HWLLDLPPEAGLPAARSTLSRLLAVQQALKTQAWLREALG 112 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + + ++ ++ + D D ET+ + AL + L+ Sbjct: 113 AQDEAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALETALSAALERTYAQLSE 171 Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL +I +W AS P+ ++ MR + L GP++ T A Sbjct: 172 RFLGTESRIVLTFWRLL---SGASDPIPVRLRAMRRLLDALR----GPVVWMSPTDPEGA 224 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 ++ A + ++ +TH + L Sbjct: 225 DLDFLTRAAGRVPVLRI--------------GYDWQAREPVPEAAAPATHGAFRTLLL-- 268 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 +++ P + + Sbjct: 269 ---------HAWPECGTVAPQAVEASAEAERP----------------------PPGLRI 297 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A +EA A L L+ ++ AL+ DR +ARRV+ L R + + G L Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 STT ++ L ++ + D A+ L+K P EL N Sbjct: 358 STTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPAWVAELERRVRRHN 417 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D A L + + L+ + + Sbjct: 418 VSGGWG------RLRRLVALRGTDTDVAEAADTGDGPPAGRLAERL-----GLLADEAAQ 466 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 G+ ++ W L L + + + + + S + + + Sbjct: 467 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFS 526 Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 EW +++ L++ + + IL +R+ FD +++ G ++ P + Sbjct: 527 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 586 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718 F S ++ +L L + Q A D + ++ T P S WL+R Sbjct: 587 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 646 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L ++ L + T P P P T S + L Sbjct: 647 LQRRLAAA---GMRIDVPVVLPALQTARQPTDMPAPAAPVLVP------STLSAAAYNSL 697 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835 PY + R+L+L + + ++ D G + H I+ ++ ++ + + L+ Sbjct: 698 RRCPYQFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPADRLALL 757 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESI 894 + + D F + + + + S+L + ++ + A +I Sbjct: 758 QALTDERFAPLLAEDGHALRFYRRWQGVMASYLAWQAAREADGWRFEAGEVDADASIALP 817 Query: 895 G---IHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLI-DPQLSLEAAALKAGSF 949 G + L G DRID V + DYKT + D QL Sbjct: 818 GAQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGA 877 Query: 950 SQ 951 Sbjct: 878 GG 879 >gi|289769236|ref|ZP_06528614.1| ATP-dependent DNA helicase [Streptomyces lividans TK24] gi|289699435|gb|EFD66864.1| ATP-dependent DNA helicase [Streptomyces lividans TK24] Length = 1165 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 132/1087 (12%), Positives = 271/1087 (24%), Gaps = 153/1087 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + +++A ELR G + P + Sbjct: 66 TLVESVADRIARGGDPERILVLTFSRKAAVELRDRMALRIG--AARAPRATTFHSFGYAL 123 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 124 VRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A+ G ++ D Sbjct: 241 VHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALAD--GGRTLVAFGDPDQ 298 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + + L R L + + R Sbjct: 299 SIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSGSGLLAATRLLTQR--- 351 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + + ++ + V E +IA LR + E Sbjct: 352 -------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTELDNIADILRRAHLEDG 404 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 + + L+ A ++ LT G+ +DI PL + L + L A+ + Sbjct: 405 VPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEPAVAPLLTALRAVAEAE 464 Query: 442 DFMAIATLVKHPLAK----------------------------------FGFPEKYLSRA 467 T + E + Sbjct: 465 ADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDPDADADAYVDEGGDAAT 524 Query: 468 KNALELVALRGNKNSY------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 K + A R ++ + + + + L R+ + Sbjct: 525 KPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPS 584 Query: 516 DKELAVLLVD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTK 555 D+ LA L + + + L + + + + W Sbjct: 585 DELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPT 644 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + +L ++ E + + +I I Sbjct: 645 RLERSARRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIDAEDIAA 700 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 +T+ + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 701 DTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLA 760 Query: 676 TAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 A + A R L+ T + SR+L L V Sbjct: 761 EPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPADVTG 818 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQP 767 +R +L TT P P P Sbjct: 819 RPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSAHPYRWW 878 Query: 768 RTYSFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFH 813 + +E K + D L + G + H Sbjct: 879 GMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQGFGNVVH 938 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + E+ + + + + + + FL+ Sbjct: 939 VLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKANARV--ALERFLKWHVM 995 Query: 874 IQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQ 930 ++ + + +E+ + + G DR++ G + D+KTG P Sbjct: 996 DRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSSEVA 1055 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + PQL++ A++ G+ + + + L+Q K A E Sbjct: 1056 RH--PQLAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPKRDGGETLPKVQAQESQ 1113 Query: 988 EKSLKNL 994 E Sbjct: 1114 EGPEGEW 1120 >gi|229541420|ref|ZP_04430480.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1] gi|229325840|gb|EEN91515.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1] Length = 1167 Score = 213 bits (541), Expect = 2e-52, Method: Composition-based stats. Identities = 138/1063 (12%), Positives = 307/1063 (28%), Gaps = 153/1063 (14%) Query: 58 QELRSEFIEITGKKST--ILPIIKS------------LGDVVEEKFTADLLLSYNLNPPV 103 +E+R + + G ++P + LG ++ + + L++ + V Sbjct: 20 REIRQKLLGDPGGAPLIYLVPEQMTFLSETRLAHDPELGGMIRAQVYSFTRLAWKILQEV 79 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 I R + + + K+ + K+ LS+ A+ N+ I+ + Sbjct: 80 GGISRTHVSSSGLNMLIRKILEDQKEE-----LSVFTRAADKTGFIDNVERILTEFKRFC 134 Query: 164 KKWEDLHA----LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 L ++ L+ + + ++L + L+ + Sbjct: 135 VSPAQLQEKRASIEEADGERVLSDKLHDLECVYQAYEQKLE--GKYIDSEDYLRLLASAI 192 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 E I I G P ++ + V D + + Sbjct: 193 EKSRYLDDAEIYIDGFHTFNPQEYLVIGELLKKCRRVTVALTTDR-----AFRGMQPDDL 247 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + H +L I+ E+ L R S FL ++ Sbjct: 248 YLFRMPGEAYAHI----YELARAFQIETEEDVALYE-----PVRFRHESLRFLQSRFEEL 298 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADR 396 S + + +A+N R E +A ++R ++ E + AL+ + Sbjct: 299 PFPSFPGE---------SSIEIWQANNRRAEIEGVARSIREAVMEGSCRYRDIALLVRNG 349 Query: 397 NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + + + I P+ ++ S L I + + +K L Sbjct: 350 EAYQDLIETVFYDYDVPYFIDRKRPMLNHPLIELIRSTLEIIRGNWRYEPVFRAIKTELL 409 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + L + LE L K RI + + R E+ Sbjct: 410 FPPGDTRMLREKMDRLENYCLAYGIQGERWTSRKRWEYRRIRGLELENLPQTDEERKIEQ 469 Query: 516 DKELAVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + LLV + + + T K + L + + Sbjct: 470 ELNELRLLVTAPILRLSRRLKRARTGKALCEALYLYLEELEIPEKLEALRLEKEEAGDLV 529 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 ++ + + + +E A+ ++ I+ ++ + + Sbjct: 530 AAR-EHDQAWDEVMGVLDQYVEILGDEPADVGKFSAIMETGLESLKFSIVPPALDQVLVA 588 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAA 685 +SRL + + G+N+GV P +++ L+ + L L +++ + Sbjct: 589 NLEQSRLSDVKLAFIIGVNDGVMPAKISEDGVLNDEEREYLRLTGLEIMPGSKRRLLDEE 648 Query: 686 HDFEMANGTR--HLIYTRSLREN-NIPTIASRWLQRLLVLGGT---------DFFDNLKK 733 F A T L+ + L + + S ++ R+ + K+ Sbjct: 649 FIFYRALTTPSEKLVLSFPLADEEGKALLPSPFINRIEDMFPARGGALWVNDPAELEEKQ 708 Query: 734 RGQCYLDWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTY-------------------- 770 + + + T Q K+ P + Sbjct: 709 QAAYISHPAAAIAFVTSQLQLKKRGYPMADFWWDTYNFYMEHPEWKNRAAHAFSSLFYQN 768 Query: 771 --------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 S S ++Q P++ ++ L+L F+ D + G Sbjct: 769 KARKLSEKTSRELYGDHILASVSRMEQFFTCPFSHFSTYGLRLRERDVFR--LDAPNIGD 826 Query: 811 LFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL- 859 LFH + + + + + E+ + + + L + Sbjct: 827 LFHGALKWISDTLQREGIPWSEITKQQSMELAKAAVDDLAPKLQHQILLSSKRYQYIKRK 886 Query: 860 FHKISHS--FLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLT--------GFADRID- 906 ++ ++ +S E + + + + + L G DR+D Sbjct: 887 LEQVVGRASYILSVHAKRSGFEPVAMELAFGPKKELPPLSFTLKNGAKMELQGRIDRVDK 946 Query: 907 -LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFY 962 ++G V I DYK+ + +D Q+ + + A + Y Sbjct: 947 AESENGVYVRIIDYKSSAHKLDLTNVYYGLDLQMLTYLDLIMTYSKQLTGEETIPAGVLY 1006 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 L D + + +K SA+E+ E+ LK+ LL + E Sbjct: 1007 FHL-----HDPLISAEKMLSAEEIEEEILKDFRMRGLLLDSPE 1044 >gi|254785005|ref|YP_003072433.1| hypothetical protein TERTU_0822 [Teredinibacter turnerae T7901] gi|237686099|gb|ACR13363.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 909 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 126/895 (14%), Positives = 277/895 (30%), Gaps = 98/895 (10%) Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + W + L + + + + +I S P T L+++VA Sbjct: 60 YQGWLQDL-WQRLTLDGRHPRSAQVLMTQQQEMLLWETVI-----TSHPDTPPLLNSVAT 113 Query: 252 HPNGAIVLPGLDC-HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 N + +P + T ++ + H Q LL F ++ Sbjct: 114 AKNAQDAWRLVCEWALPVDSFETDELLQSHQLFLAWVAAFHEQCQQRGLLTFSELSGVIC 173 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI----------PNIQKCFSDVA 360 L + + + + D + + + V+ Sbjct: 174 DALTHSDPAAAVATWRLPNQIVMYGFDDQAPALLQLLEALTGCGCQLIHVAEPEPTPQVS 233 Query: 361 LIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARR--------------VKLE 405 L + + E S+A ++ ++ ++ D + R + Sbjct: 234 LCSFSDPQAELESVATWCYQAIAAQPVQQIGVVIPDLSARRAEVERHFNRVFDPHGILPT 293 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 + ++SAG PL+ L + + L+ P Sbjct: 294 TPQHAPGFNMSAGQPLAQVPVMQAALQALQLNRARLELETASALLLSPFLGIQSE----- 348 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLV 524 + ++L+ R+ Q + + E + + L Sbjct: 349 --------------------LAARALLDVRLREQGELSPSRQLLRTSAAEFCDDEGLPLC 388 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 +H + + S+W + + LQ + R L L +++ + Sbjct: 389 EHWYHALDDFDKLAKQYGPSA--RLPSEWLPVFMAQLQCLGWPGDRTLDTLEYQQV-QVW 445 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + A + R + + + S + ILG+LE+ L FD L Sbjct: 446 QTCLDEFAALDVVTAPMAWSEALSLLRRLLQQRSFQPQTRISPVQILGSLEAAGLPFDQL 505 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEM-ANGTRHLIYTR 701 + GL++ WP + NP L +Q N +AE+ A + + + ++ Sbjct: 506 WVMGLDDEAWPPAPSPNPLLPLAVQVAHNTPQSSAEREFRYARNLTQRWLASASQVTFSY 565 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + ++ S +Q F ++ + W + + + + Sbjct: 566 AATRDDKQLQPSPLVQ---------AFAQTREAVPLFTAWEQLQWQSREMESIEDTNAGG 616 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 E Q + ++ P+ +AR L+ +P D +RG L H+ + + + Sbjct: 617 VAEVQRIRGGAAILRDQAACPFQAFARHRLRASEVPEVVLGLDAAERGNLLHHAMEIVWR 676 Query: 822 KRINK--NTPEINHLMKQIIDSHFEKENLPPHID--------IIWRHLFHKISHSFLEHE 871 K ++ + N + ++D + + ++LE E Sbjct: 677 KLGDQAGLLAQSNERLLALVDEAIADALRDIRRKSFVGFRFVELETRRLAGLVCAWLELE 736 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQ 930 +K + +F + + + + + DR+D L G + + DYKTG K + Sbjct: 737 KKR-APFTVVFNESRKDLTLAGLPLSV--RYDRVDALADGGLFVIDYKTGLTAVKSWEGE 793 Query: 931 KLIDPQLSLEAAA----LKAGSFSQIDCRKVA--NLFYIR-LKQKFKIDCITNDKKKYSA 983 + PQ+ L A A + A +F+QI+ R++A L + + K + Sbjct: 794 RPDQPQVPLYAIANREKVVAAAFAQINSREIALKGLADVPDVAPGLKHPADSGLDLPGVW 853 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 +L + + L ++ + GE ++ + E R+ D Sbjct: 854 KDLLAQWQQTLEQLASDFLAGEAAVA--PKVPGSTCRYCELKGFCRIR--SVTDD 904 >gi|21223552|ref|NP_629331.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] gi|9714471|emb|CAC01313.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] Length = 1159 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 132/1081 (12%), Positives = 271/1081 (25%), Gaps = 147/1081 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + +++A ELR G + P + Sbjct: 66 TLVESVADRIARGGDPERILVLTFSRKAAVELRDRMALRIG--AARAPRATTFHSFGYAL 123 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 124 VRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A+ G ++ D Sbjct: 241 VHRAVLLARRPEVAAHLTAQYDAVYVDEYQDTDPAQVRLLHALAD--GGRTLVAFGDPDQ 298 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + + L R L + + R Sbjct: 299 SIYAFRGADVNGILDFPTAFPRAD----GRPAPVGVLRTARRSGSGLLAATRLLTQR--- 351 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + + ++ + V E +IA LR + E Sbjct: 352 -------MPLTRLPADKVRAHRELTPVRGGGRVEAYTYPTAGTELDNIADILRRAHLEDG 404 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 + + L+ A ++ LT G+ +DI PL + L + L A+ + Sbjct: 405 VPWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEPAVAPLLTALRAVAEAE 464 Query: 442 DFMAIATLVKHPLAK----------------------------FGFPEKYLSRAKNALEL 473 T + E + K + Sbjct: 465 ADTGARTGERFGALGSEADADPRADADADADADADAYVDADADAYVDEGGDAATKLSRGE 524 Query: 474 VALRGNKNSY------------DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 A R ++ + + + + L R+ + D+ LA Sbjct: 525 HAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPSDELLAQ 584 Query: 522 LLVD--------------------HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 L + + + L + + + + W Sbjct: 585 ALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPTRLERSA 644 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + +L ++ E + + +I I +T+ + Sbjct: 645 RRGGAAGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLEEIDAEDIAADTLARR 700 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 701 AVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG 760 Query: 682 GQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 A + A R L+ T + SR+L L V +R Sbjct: 761 ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPADVTGRPRRPL 818 Query: 737 CYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFS 773 +L TT P P P + + Sbjct: 819 AVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSAHPYRWWGMWDPT 878 Query: 774 EIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITEL 819 E K + D L + G + H + E+ Sbjct: 879 ESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQGFGNVVHVLADEV 938 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + + + + + + FL+ ++ Sbjct: 939 ASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKANARV--ALERFLKWHVMDRAGRT 995 Query: 880 KIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQ 936 + + +E+ + + G DR++ G + D+KTG P + PQ Sbjct: 996 PVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSSEVARH--PQ 1053 Query: 937 LSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 L++ A++ G+ + + + L+Q K A E E Sbjct: 1054 LAVYQLAVREGAVDEAFDGVRPQPGGAELVHLRQGAPKRDGGETLPKVQAQESQEGPEGE 1113 Query: 994 L 994 Sbjct: 1114 W 1114 >gi|83749758|ref|ZP_00946734.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|207743471|ref|YP_002259863.1| homologous recombinational repair protein [Ralstonia solanacearum IPO1609] gi|83723578|gb|EAP70780.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551] gi|206594868|emb|CAQ61795.1| homologous recombinational repair protein [Ralstonia solanacearum IPO1609] Length = 959 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 153/1042 (14%), Positives = 292/1042 (28%), Gaps = 113/1042 (10%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +D + + VPT I +R Sbjct: 5 AFAPGPAFLPHAADA-------AWRFFDAHAAQAPGAGVVVVPTAAQIPGVRGALHASAQ 57 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 G +LP I +LG + DL +L S + RLL + + + Sbjct: 58 AGGVPRLLPRILTLG-----HWLLDLPPEPSLPAARSPLSRLLAVQQALKT--------- 103 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 A +A+ L + D + + + + ++ + Sbjct: 104 --QAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAADSETDGRHDVLEAA---- 157 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L A ++ +L E + + R + G++ IP R M Sbjct: 158 LSAALEHTYAQLSERFLGTESRIVLTFWRLLS--------------GASDPIPVRLRAMR 203 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + G +V + + L I Sbjct: 204 RLLDALRGPMVWMSPTDPEGADLDFLTRAAGR--------------------VPVLRIGY 243 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + R L + ++ + + A Sbjct: 244 DWQAREPAPEAAAPATHAAFRNLLLHAWSECGTAAQPAAEASAEAERPPPGLRIAGAARF 303 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +EA A L L+ ++ AL+ DR +ARRV+ L R + + G LSTT + Sbjct: 304 EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 363 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L L+ + D A+ L+K P EL +N Sbjct: 364 AALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPAWVAELERRVRRRNVSGGWG 423 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + T + V ++ L+ + G+ Sbjct: 424 RLRRLAAQRGTDTDAADVTDATDAGPLAERL--------------GLLADEAALWRRAGH 469 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ W L L + + + + + S + + + EW Sbjct: 470 ATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHGSADAGARFSLQEWRA 529 Query: 608 IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ L++ + + IL +R+ FD +++ G ++ P + F S Sbjct: 530 LLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 589 Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724 ++ +L L + Q A D + ++ T P S WL+RL Sbjct: 590 DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRL- 648 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 ++ L + T P P T S + L PY Sbjct: 649 --AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPATLSAAAYNSLRRCPYQ 700 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841 + R+L+L + + ++ D G L H I+ ++ ++ + + L++ + D Sbjct: 701 FFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDE 760 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAI---ESIGIH 897 F + + + + S+L + ++ + A +I + Sbjct: 761 RFGSLLAEDGHALRFYRRWQDVMPSYLAWQAAREAEGWRFEAGEVDADTSIALPGGQALR 820 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAALKAGSFSQIDCR 955 L G DRID V + DYKT K D QL + Sbjct: 821 LRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFYGLLDARAAVGGWVSL 880 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS 1015 + D L+E+ K++ + Sbjct: 881 DG--------DARGDKRETGLPDFTEVVDWLTEQMGKDMTALAAGAPLPAFG-------D 925 Query: 1016 EKSNIQSEYDHLARVAEWREEY 1037 E + L R W Sbjct: 926 ESACRYCAARGLCRKGYWSAGA 947 >gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] gi|256584618|gb|ACU95751.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] Length = 1066 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 128/1036 (12%), Positives = 271/1036 (26%), Gaps = 129/1036 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGK---------KSTILPIIKSLGDVVEEKFTADLLLS 96 SV + +++A LR++ ++ PI++++ + Sbjct: 58 SVLVLTASRQAADALRADITRRLTGHRGERAGEVRTVREPIVRTVHSYAFAVLRLQAVRD 117 Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 P RLL ++ R L ++ P+ P A+ L D++ Sbjct: 118 GLPVP------RLLSGPEQDVVVRELLAGDLERGAPDWPE-PLRPALAVPGFAEELRDLL 170 Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY-WTERLVELNASSPVGYQIALM 215 EDL L + + W+ A F + + + + + Sbjct: 171 LRAAERGLGPEDLIKLGHRQGRDEWVAAGRFWRQYEEVTLLQGVGGHAVGESGAPALDAA 230 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 A L++ P ++AG + + P Sbjct: 231 ELVASALVELEGDPELLAG---------------EQARVRHLFVDDAQHLDPLQYRLVRL 275 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 T + +S L + V + V+ ++ Sbjct: 276 LAETASDAVLAGDPDQSVFSFRGADPRLFADADPDGDRTVVLTRSHRLDPVVHEAVGRIA 335 Query: 336 TSDM--RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393 + ++ V + EA IA LR + + + + Sbjct: 336 ATLPGTSAHRASVPTPTRGREGRGKVRTRLSPTPAAEAAWIADQLRRAHLLDGVPWSQMA 395 Query: 394 ADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKL--NDFMAI 446 R L R ++ +PL+ L ++L A D Sbjct: 396 VLMRSVSRSLPVLQRALTMAGIPVAAVTEELPLARQPAVRPLLTVLWAAADPRVLDAETA 455 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ PL R + G ++S Sbjct: 456 EMLLSSPLGGADPLALRRLRRGLRRLELVAGGERSS-------------DELLVEALRDG 502 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L++ + + + + + ++ S V Sbjct: 503 DVLAGLADAEAAPVRRVSRLLTVAREAMRSGAGVEDVLWQVWQASGLQDRLVAQAAKGGT 562 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 R +L + + + + + ++ I G+++ P + S Sbjct: 563 LGMRADRDLDAVVALFDAARRYVDRLPKAGVLGFVEY----LSSQHIAGDSLAPVAVRGS 618 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---- 682 + +L + + + + GL EG+WP + L DL + + Sbjct: 619 GVSLLTAHGAVGREWSVVAILGLQEGMWPDLRLRGSVLGVERLVDLLSGVDDDAVATVSA 678 Query: 683 -------QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL-------GGTDFF 728 + + A+ RH + +++ + SR+ L+ GG D Sbjct: 679 TAPLLAEERRLFYVAASRARHTLLVSAVQGEDE--QPSRFFFDLVDAGVDTERGGGPDVR 736 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------------------------------ 758 ++RG + +L + + Sbjct: 737 LVARERGLTLAELVGELRAAVTDTELEPRRRKLAARQLARLARDGVPGAHPEQWYGLAGN 796 Query: 759 ---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S S + L+ P R D GTL H Sbjct: 797 SSDRPLREPDEVIRVSPSVVDTLVKCPLRWLLERHGGTDPAQ------LSAVTGTLVHA- 849 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 L + + + + R + SFL + + Sbjct: 850 ---LAQAAAEGTDEQTLWKELDEAWAKVDAGAPW--FSRKERVRVEGMVRSFLTWLRQSR 904 Query: 876 SSIEKIFVNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + V ++++ + LTG DR++L G + D KT +P + A Sbjct: 905 DELTQHAVEQDMRVSLPEAEGEPSVALTGRVDRLELDAEGRPVVIDLKTSKSPVAKDAAA 964 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 PQL++ A G+FS + + + T ++ +E + + L Sbjct: 965 -EHPQLAVYQLATLLGAFSG-HKGHTGGARLLYVGKPNAKTGATVREQPALDEETARRWL 1022 Query: 992 KNLIEIVTLLQNGEQP 1007 + + P Sbjct: 1023 NEVRKAAVDTVGPTYP 1038 >gi|160938157|ref|ZP_02085513.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613] gi|158438961|gb|EDP16717.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613] Length = 1196 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 123/968 (12%), Positives = 264/968 (27%), Gaps = 151/968 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L I + + L ++ E + L++ + E + + Sbjct: 127 GFIGQLKSQISELYQYGITPDMLRDVRGEADSPLLAQKLEDLEVIYSGFREYIESHYIT- 185 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ E I++ G TG P RL+ H + +D Sbjct: 186 -AEEILDILCRELPKWEPLKDSIILLDGYTGFTPVQYRLVELFLMHAREVVCTVTID--- 241 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + N + Q+ + K+ G E S Sbjct: 242 ---------------SRENAYKESSIQHLFYMSRHTVCRVASMAKQHGIPKKEDIICSRR 286 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + D ++ + + + + N EA + + + E Sbjct: 287 PAWRYDESPELDFLEQNLYRYSGRTWEGKEERIQVYKGRNPAGEAAYVCSRIEQMIKEEG 346 Query: 387 ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + +A+IT D + R + + GI + + ++ + L + Sbjct: 347 MRYRDAAVITGDLPSYGRELAHQFDEAGIPYFLDDKKSILENPMVELIRAALEMVKD-FS 405 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELV-----ALRGNKNSYDIMDLKSLVLDRIA 497 + + +K L A + + + DR+ Sbjct: 406 YESAFRYLKTGLVYDKAGSTEERAAADTAADTSGDAGEADAGSGFNGSREHAEQMTDRLE 465 Query: 498 TQKNNTHVPHWQSRLSEEDKELAV-------LLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + W+ S +++ L + + + PL + + +I Sbjct: 466 NYVRALGIRGWKRWDSCWERQYRGGEKLNLKELNQYRMWILEPLRPLREAFKAEGA--TI 523 Query: 551 SDWTKLTVTCLQNVCLDE---------------HRKLPNLWFEEEGKTLSSLFSKIIETG 595 + T L+++ L E + + + + LF ++ Sbjct: 524 ASVTAALRQFLEHMELREKLEEYRDFFLERKEPGDENLAREYGQVYDRVLELFERLEGLL 583 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 KA+ +I I+ V + + SRL L G+NEG P Sbjct: 584 GAEKADMKNYIQILDAGFQEIQVGVIPATVDQVMVGDITRSRLEAVKVLFFVGVNEGTVP 643 Query: 656 KNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSL-REN 706 + LS ++ L T ++ + +R L+ T + + Sbjct: 644 QRKNGGSLLSDRDRAALRKMDIELAPTVKEDGCIQKFYLYLMMSKPSRQLVLTYAGLTPD 703 Query: 707 NIPTIASRWLQ------------------------RLLVLGGTDFFDNLKKRGQCYLDW- 741 S + R ++++G+ + Sbjct: 704 GKSQRPSNLMGEVGKLFPGMKTLDEHSVEWPVRTGRDARELLIQGLRGMQEQGEDDRERE 763 Query: 742 --------------------TRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQL 778 R+L + +R L + S + ++Q Sbjct: 764 DAAFMQLFQHFYTSQEHRDKVRQLVDAAFYSYEERGIGRAAARALYGRELQGSVTRLEQF 823 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + YA + R L+L + + + D G LFH I ++ + + Sbjct: 824 ASCAYAHFLRYGLELMERQ--EYELEAVDMGNLFHQSIDRCFASMKDRGQDW--RELTEE 879 Query: 839 IDSHFEKENL-------------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883 KE + + +I+ + E+ + E + Sbjct: 880 GRKSLVKECVTQVTEEYGNTIMSSSARNAYLAGRVERITDRTIWALAEQVKKGDFEPVGF 939 Query: 884 NIPAK-------MAI---ESIGIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETA 929 + M I E + L G DR+D + I DYK+G Sbjct: 940 EVSFSAIDNLKAMRIGLSEDEELQLRGRIDRMDLCRDEDHVYVKIIDYKSGTTSFDLAAL 999 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + QL + A + ++V A +FY + D I + ++ ++ Sbjct: 1000 FYGLQLQLVVYMDAAVEMEERRHPDKEVVPAGIFYYHIG-----DPIADKQEGMDERDIE 1054 Query: 988 EKSLKNLI 995 ++ LK L Sbjct: 1055 KQILKQLR 1062 >gi|229084225|ref|ZP_04216509.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44] gi|228699103|gb|EEL51804.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44] Length = 1165 Score = 212 bits (539), Expect = 3e-52, Method: Composition-based stats. Identities = 113/940 (12%), Positives = 253/940 (26%), Gaps = 138/940 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 L + A ++L +I + +++ + + L Sbjct: 102 LYVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSGDEQKLLANKIYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSDYVKGAEIYIDGFHSFSPQELEIIRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + V +D + + L + E Sbjct: 220 LMIYGARITVTLTVDEKTLAQPVSELD-----------------------LFYQTVLTYE 256 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 VK+L ++ + + + E++ + D+ L A N R Sbjct: 257 KVKQLAREEKIAVENTIPMREQPRFHSPALAHLEAEFESRPSKKFQSEPDITLYTAANLR 316 Query: 369 EEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 EA +A +R + E + A++ + + +K T + I + P+S Sbjct: 317 AEAEGVAREIRRLVAEEGYRYRDVAVLLRNGESYYDVMKTLFTDYDIPHFVDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ +K L K + + E L Sbjct: 377 PLIECIRSALEVISGNWRYDAVFRCIKTELLYPLDVRKESMREEMDEFENYCLAYGVQGK 436 Query: 484 DIMDLKSLVLDR---IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + R + T +++ + + + + Sbjct: 437 RWTADEPWTYRRYRSLDGAGTQTDSEREMEEKINRLRDVVRTPIIRLQKRFKRATSVMQM 496 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + L + K E L ++ + + +L +E K Sbjct: 497 CEAMYLFLEELEVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKM 555 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + +ID+IT ++ + I +R+ N + G NEG+ P + Sbjct: 556 SRAMFIDVITTGLEALQFANIPPSLDQVLIANIDRTRISNVRAAFVIGANEGIIPAAPSD 615 Query: 661 NPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIA 712 LS + +L T + + + ++ + L + L + ++ Sbjct: 616 EGMLSDEERESLATAGVELAPTTRQTLLEEQFVIYQTVTRVSEKLYISCPLADEEGKSLL 675 Query: 713 SR----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK------------ 744 S ++ + + + L + + Sbjct: 676 SSSFIKKVKRMFPSVKEVFITNDVNDLSRQAQISYVATPEVTLSYVTQQLQNWKRYGFEG 735 Query: 745 ------------LDYTTKQPHYKRPKPFPPLEAQPRTYSF---------------SEIKQ 777 + Q R + + S S ++ Sbjct: 736 NLDFWWDVYNFYVTSPDWQQKSSRVLSSLFYRNRAQKLSPVVSRDLYGDKIKGSVSRMEL 795 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLM 835 YA +A+ L L F D D G LFH + ++ K + N+ +++ Sbjct: 796 FNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKE 853 Query: 836 KQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFLEHEEKIQSSIEKIFVN 884 + + + +E P I +I S + E S + + Sbjct: 854 CEHLAAVVIEEIAPLLQRQILLSSNRNHYLKQKLQQIIFRTSLILREHAKSSGFVPVDLE 913 Query: 885 IPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTG-DNPKKET 928 +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 914 VPFGMGGTGSLPPMEFTLANGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSTKALDLTE 973 Query: 929 AQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 974 VYYGLALQMLTYLDVVISNANTWMKKDQTASPAGVLYFHI 1013 >gi|289640616|ref|ZP_06472788.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] gi|289509505|gb|EFD30432.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] Length = 1162 Score = 212 bits (539), Expect = 3e-52, Method: Composition-based stats. Identities = 127/1027 (12%), Positives = 261/1027 (25%), Gaps = 125/1027 (12%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 T+VE + L A++ + ++RA +ELR + +P+ + Sbjct: 66 TIVEAVARRVRDGLDPAAILVLTFSRRAARELRERITWRL-GAAVGVPLAWTFHAWCYAL 124 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + P RLL R+ L + P P + Sbjct: 125 LRLYRPDPLGVPP------RLLSGPEQDAQLRDLLAGTREVGRPRWPAA-LAGCLTTRGF 177 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ ++ + L L + W A F Sbjct: 178 AEETRAMLARAREVGLDPDALARLARDTGRADWAAMATFYADYLDALDHVGAIDYPELVQ 237 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + ++ + + + PA RL+ VA GA ++ D Sbjct: 238 RAALVAESDDVGAQLRRRYQAVFVDEYQDTDPAQERLLRAVAG--GGADLVVVGDPDQSI 295 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + + + L + + V+ Sbjct: 296 YGFRGAEVRGLLEFPARFPHVDGRAADVVTLRRCRRLGPVALAVSREVARR--------- 346 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 +P + + V +A IA LR N Sbjct: 347 ---IPATGLPAGHLRAHRELVAAGPPVAERVEARTYTTTGAQAEGIADLLRREHLGNGTP 403 Query: 389 S---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 A++ + + + G AG L ++ LL Sbjct: 404 WERMAVLVRSATRSMLLLRRMLVAGGVPVEVAGDELPPARDGTVAPLLLALRCVDGPPNE 463 Query: 446 IATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 + H L + RA A R + + ++ R+A + Sbjct: 464 LTAQAAHTLLTSPLGGADPGALRALGRALRAAERVAIAAGAVATARTDGAGRLAGLPAES 523 Query: 504 HVPHWQSRLS-------------------------EEDKELAVLLVDHILQCITPLVTYK 538 P ++ E A L + + Sbjct: 524 AAPGGRAGGPAMPASSAELLRQAVVDPDRALLMVEERLAGPARRLGELLRSARAVRAAGG 583 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 T+++ S S W + +L + L + + + Sbjct: 584 TSEDVLWVLWSGSGWPRRLERASAAGGAAGRAADRDL---DAVVALFAAVGRSSDRHGPG 640 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++ + I G+ + + + + +L S+ L +D +++ G+ +G WP Sbjct: 641 TGIGPVLDELEQQQIAGDVLTERPARPDVVRLLTAHRSKGLEWDVVVVCGVQDGEWPDLR 700 Query: 659 AKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPT 710 + L L T + + F +A R L+ T + T Sbjct: 701 TRYSLLEAERLERPELGGVREPVTRAELLADERRLFYVALTRARRRLVVTAVDSAEDQGT 760 Query: 711 IASRWLQRLLVL-------------------------------GGTDFFDNLKKRGQCYL 739 SR+ L + +++ L Sbjct: 761 SPSRFFHELAEAERLGVVVTRGRSRPARPLTLPSAVAALRRAAVDPESTPAMRQAAAARL 820 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPL--------------EAQPRTYSFSEIKQLINDPYAV 785 +P +P P S S + L+ P Sbjct: 821 ARLAAAVDDAGRPLVPAARPGRWWGLVEVTSGEVPVVAPDAPVRLSGSSLSGLVTCPTRW 880 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + + + G + H + E+ R + ++ + ++ + Sbjct: 881 FLEHEAHAQGTSNAEMG-----FGKVVHALADEVATGRTPPDLGALDTRLDRVWRHLGYE 935 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFAD 903 FL + + +P +A+ + L GF D Sbjct: 936 AQWRSEQQRAAARQAL---ARFLVWHAAAR-GRRLVASEVPFSCDLAVGGRTVRLRGFVD 991 Query: 904 RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVAN 959 RI+L +G V + D+KTG P + PQL + A++ G+ + + Sbjct: 992 RIELDDAGRVHVVDFKTGRTAPSGTDVARH--PQLGIYQLAVRGGAVASAGPGSGAEPGG 1049 Query: 960 LFYIRLK 966 + L+ Sbjct: 1050 AELVHLR 1056 >gi|294794376|ref|ZP_06759512.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp. 3_1_44] gi|294454706|gb|EFG23079.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp. 3_1_44] Length = 1164 Score = 212 bits (538), Expect = 4e-52, Method: Composition-based stats. Identities = 118/1005 (11%), Positives = 249/1005 (24%), Gaps = 146/1005 (14%) Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 L RL++ + K L L + L + D Sbjct: 93 RAMLLRLVMKRKQKE------------LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPAD 140 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L L I + E L ++ A + + Sbjct: 141 LERGAETVKNNVLQKKLRELAICMSAYEEELSRHGERDIDPIM-EIVEALPQSPLME-NS 198 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + I G P L+ T+ + A++ +D + N Sbjct: 199 HVFIDGFHWFTPTHYELIYTLFDLAKEAVIT--IDLPMAPKALNLARR------------ 244 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 H ++ D L + + Sbjct: 245 GEHLFSRPLEIYDTLVARYGFNINW-------------VGFDGKRGPQIVQELEANYFAS 291 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKL 404 + + LI N EA ++A + ++ + ++ + Sbjct: 292 PSKKNTTDATIPLIRGYNREREADAVARRILAYIESSEEARYRDVCIMLRESETYGDTLE 351 Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 R+GI I P+ +LT+L + + ++ L+K L Sbjct: 352 KVFARYGIPHFIDRQRPMKNHPLGELLTALFDIVRHNYSRDSMFLLLKTDLMPLTREAVD 411 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 LE L+ + + ++ E ++ Sbjct: 412 ELENYV-LEFGIDHYKWERESWPYLRGFHEGQDEESHVDAPRRARVNKAREIIMDILSPW 470 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 D T G L I + ++ ++ E+ Sbjct: 471 FDFAANAEGH--TGAEWGTQLYGLLEILQVPERLYEWAKDAETIGDQESKAS-HEQMYNA 527 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + S +I E + ++ + + I + Sbjct: 528 VLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPK 587 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--------KTAEKYIGQAAHDFEMANGTR 695 + + GLN+GV+P++ + + +L + + M + Sbjct: 588 VFVMGLNQGVFPQSMGDEGLIKDKERQELADAGITLAEGALPKAFNENFLLYLAMTRASD 647 Query: 696 HLIYTRSLR-ENNIPTIASRWLQRLLVLG------------GTDFFDNLKKRG------- 735 L + + E+ S +RL LG D + R Sbjct: 648 SLTLSYAGSGEDGTGLEPSLVAKRLESLGYIDQVVDIPLSIAPDTEADYVWRPLQSLSLL 707 Query: 736 -QCYLD----------------WTRKLDYTTKQPHYKRPKPFPPLEAQ------------ 766 + + W R+ + + + Sbjct: 708 SERWGALFSGYEVNPLWWGLYNWARESETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFL 767 Query: 767 ---PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI--- 820 + S + +++ P+ YA+ LKL+ + + GT H + L Sbjct: 768 SKGYMSGSVTRLERYQQCPFKFYAQYGLKLEPR--PVRSFGAPEIGTFLHANLERLGNYL 825 Query: 821 ----KKRINKNTPEINHLMKQIIDSHFEK----ENLPPHIDIIWRHLFHKISHSFLEH-- 870 K+ + + E +L + + D ++ E + H ++ Sbjct: 826 LENNKQWRDLDEEEQENLCRTVADEILQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLV 885 Query: 871 EEKIQSSIEKIFVNIPAK-------MAIESIG---IHLTGFADRIDL--LKSGFV-DITD 917 E +S + ++ + + + L G DRID + D Sbjct: 886 EWSKRSDFDTKYLEQDFGRQGGWDPIRVSLGEDRYLRLIGQIDRIDEYTRDDQTYGMVID 945 Query: 918 YKTGDNP-KKETAQKLIDPQLSLEAAALK-AGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+G + + QL AL+ A + A + Y +K Sbjct: 946 YKSGGAHVTAQDVYYGLKLQLMTYLLALESAYGKTHGGSMSPAAVVYSYVKNPKIPADAP 1005 Query: 976 NDKKKYSADELSEKSLKNL------IEIVTLLQNGEQPFISHLRL 1014 + + + +N IE++T + N + S Sbjct: 1006 ISYEDAVSLANESDAWQNSGYFSDDIELLTHIDNKFLSYGSKRGP 1050 >gi|326335404|ref|ZP_08201591.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692170|gb|EGD34122.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 911 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 148/1029 (14%), Positives = 308/1029 (29%), Gaps = 160/1029 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +I L + + + P +R+ LR + + K TI P Sbjct: 2 FLERVIDDFLENYVDYSTE----------DIIFVTPFRRSALFLRKIYAQKL-HKVTISP 50 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 +L +++E +S+IQ L EL + + D + L Sbjct: 51 EFITLDNLLERISGIR---------KMSDIQGLFELYHIYKENTDTERDDFEKFIGWGQL 101 Query: 137 S--LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG--MWWLLAADFLKIAS 192 + + K++ ++ I+ E W L + +W L Sbjct: 102 LWNDFSDIDHYLIPQKDIFPYMEAIKEAE-HWSVGEELTPIQKRYLTFWRN----LGSYY 156 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 K +++ + + K K I G A ++ + Sbjct: 157 KNLRSEMLQQRLGYQGFIAREAVSQLDVYKSKNEKKLHIFVGFNALTKAQEHIIQYILEE 216 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 G + ++ ++ + + Q L K + I R Sbjct: 217 MKG-DIYWDIEKYLLEG-----EHSAGYFIKKYINEWRYYQGRLPKWIKDTPINR----- 265 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 ++A+ + + Sbjct: 266 ---------------------------------------------NIAIYGTPKQVNQVH 280 Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + L + ++A++ +D ++ + + + I+I+ G PL T + +S Sbjct: 281 LLTDILEKLPETELDQTAIVLSDSDMLLPLLQSIDTHKLPINITMGYPLQQTPLHDLFSS 340 Query: 433 LLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 I + L+ P F E + + + +L + Sbjct: 341 FFKLYISGKWYHKEVKALLMQPFLSNLFSED------------YKKNTISFINEYNLIYI 388 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + L++++L+ + Sbjct: 389 YKKHLEKYVKDADKILIDLIFDDTKNISVSRLIENVLRFL-------------------- 428 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 +++ DE NL + L + ++ N + Sbjct: 429 ------FIIRESLEKDESSNKLNLEYLYNFYELFNQLD-FLQRKYGFIENIKSLYYLYND 481 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 L+ + + + E L I+G LE++ + F +++ LNEG++PK +KN + ++++ Sbjct: 482 LLAKQKLNFRGEPLQGLQIMGILEAQNIQFKNVLVTSLNEGIFPKGNSKNSLIPFDVRTN 541 Query: 672 LNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFD 729 L L T ++ + F T I + + SR++ +L + Sbjct: 542 LELPTYKQEDYVYTYYFYRILQHTNKAILFYNTDTEGLKGSEKSRFILQLFSALRIEPTI 601 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + L K R +S S + I +P Y ++ Sbjct: 602 KSPEVKIVEHQPIEVLKNREIINKLKDIATGKDK-KHGRGFSSSALTSYIMNPIIFYQQQ 660 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQ----IIDSHFE 844 IL + ++ + G + H ++ L I K E M++ ++ F Sbjct: 661 ILDVKDEKEVEEIVENRSFGDIIHRVLQILYTPYIGKILFKENIKQMREKVSLVVRKIFI 720 Query: 845 KENLPPHI---DIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPA--KMAIESIGIH 897 + I ++ + H FL +EK S +E +F+ ++ E Sbjct: 721 EYQKNEDITGKNVFILKTIEEYIHKFLSVDEKNVSEQIVELLFLEKKILTEVRYEEFDFP 780 Query: 898 L--TGFADRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDP-----------QLSLEA 941 + G DR++ +G + I DYKTG ++ +K + QL + A Sbjct: 781 ILYNGTLDRVEKR-NGAIYIVDYKTGRV-EQRQITLTEKHWEKLIIDFKYSKAFQLLMYA 838 Query: 942 AALKAGS-FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS-EKSLKNLIEIVT 999 L+ V N + LK F I + K S D K + LI ++T Sbjct: 839 YLLRKSGKVEDDIPIYVGNYSFKNLKPGFLGFKIASGKPMVSIDNAILTKFEEKLIALLT 898 Query: 1000 LLQNGEQPF 1008 + + PF Sbjct: 899 EIYDPSIPF 907 >gi|94311070|ref|YP_584280.1| DNA helicase/exodeoxyribonuclease V subunit B [Cupriavidus metallidurans CH34] gi|93354922|gb|ABF09011.1| ATP-dependent nuclease, subunit B [Cupriavidus metallidurans CH34] Length = 976 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 170/1058 (16%), Positives = 317/1058 (29%), Gaps = 122/1058 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG 69 + P F + A + D P I VPT I +R Sbjct: 5 SFPPGPSFLDQAATA-------TWYFLDHCGPAA-TGAHIVVPTAAQIPGVRQALDAAAR 56 Query: 70 --KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 + +LP + +LG L+ + P + RLL + + I Sbjct: 57 AAGQPRLLPRVLTLG---HWLLDLPPDLAADPTPTRGHAARLLAVQQAI----------- 102 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + + A LA+ L I D + + + + + AA Sbjct: 103 RSQDWLRTAFGAQTEGAAWGLAQTLLSISDELSARWLEDAAIRGDDDLEGDDSDERAALL 162 Query: 188 LKIASKYWTERLVE----------------LNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + + P+ + ++ A+ + GP++ Sbjct: 163 QGALQRTYAHLSERFLGQEAQIVLAFWQMLSGPDDPLPARRRALQRMAQQVA----GPVV 218 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 G T P AR + V W +E T + Sbjct: 219 WIGPTSPEPVEARFLEQAGELVPTLEV---------GYDWTGASEAGGESDWYRTLLALW 269 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 P R S + P + L ++P Sbjct: 270 P----------------------------EARRDGDSSADSEPFAAPPALPAALSAELPA 301 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 + V +I + +EA + A L L+E ++ AL+ DR +ARR + L R G Sbjct: 302 ERPR---VRVIGSARFEDEAAAAADQLVQWLNEGRRHVALVAHDRVVARRARALLARAGA 358 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + G LSTT ++ L + + + D A+ L+K P P A AL Sbjct: 359 PVRDETGWKLSTTRAAAALMRWFDVLARDGDSAALLDLLKSPFC---LPAFEHRGAAIAL 415 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 +R + L L +R + E + + + I Sbjct: 416 MERRIRRAVVTGGWARLAHLFAERERAAGA------LVDAETMEASDAELQIRAAARTLI 469 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 L + W L + + + + Sbjct: 470 ATLADEAAQWPRGLAQQPLHVWLGRLDAMLDTLDMRVALAADDAGRQLLDALAKLGDLPD 529 Query: 592 IETGSCIKANAIEWIDIITRLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 ETGS N E+ +++ L++ +P + S + IL +R+ FD +++ G + Sbjct: 530 DETGSHATLNQQEFRAMLSALLESVAYKEPSAQSQSRITILPLNGARMRRFDGVVVVGCD 589 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNI 708 + P + A+ F S M+ +L L+ E Q A D + ++ T Sbjct: 590 DAQLPSSAAELMFFSNQMRRELGLEDREARFAQQARDLAEVLLNNSDVVLTWQRIGSRGE 649 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 P S W++RL + G + T P P P E P Sbjct: 650 PHHVSGWIERLS--------ACCARAGTPIEASATPALHDTFAQPAGMPAPVAP-ERVPE 700 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI---N 825 +S L PY +A R+L L + D ++ D G L H ++ + ++ Sbjct: 701 RWSAQAYNTLRRCPYQFFASRMLGLSGLDTLSDDLEKRDIGNLLHRVLLQYHEEIHASGE 760 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVN 884 +++ +++I D+ F K+ I + + ++ S++ + + ++ Sbjct: 761 RDSDRRLARLREISDTSFGKQIAEDGNAISYYRRWMEVLPSYVAWQAEREEAGWHWRGGE 820 Query: 885 IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939 A + + + + + L G DR+D G + DYKT +++ D QL+ Sbjct: 821 FDAGVDVAMPDGVPLRLAGRIDRLDKGPDGAHAVLDYKTQPASRLRRKAGDAEEDCQLAF 880 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 + L ++ + + + L V Sbjct: 881 YGLL-----RADAVAGSWVALEGVKQGGRDSSPGAQREVDLPEFQAAVTWLERQLRHDVV 935 Query: 1000 LLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 L+ G + + + L R W Sbjct: 936 RLRQGAK---LPAIGDAAACTYCDARGLCRKGFWESTA 970 >gi|88856785|ref|ZP_01131439.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] gi|88813953|gb|EAR23821.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] Length = 1033 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 131/1030 (12%), Positives = 275/1030 (26%), Gaps = 119/1030 (11%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP S ++ + E +P + + T+++ LR Sbjct: 40 APGSGKTETLVE-----VVAERVHSRGWSPE---QIVVLSATRQSATALRDRLASRID-A 90 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDL 130 T+ P+ ++ + E ++ + P + + ++ +A L+ +I Sbjct: 91 PTLGPMARTANSLAFEVIREAAAVAGDGAPTLLTGAEQDQIIAELLA------GEIADGS 144 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P L L D++ DL L W+ A+ F+ Sbjct: 145 GAPWPSHLDAEVRRLRGFRTELRDLMMRCVEFGVTPRDLAQLGERNDRPEWVAASAFIS- 203 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGSTGSIPATARLMSTV 249 + + + A H +I+ + AT L+ + Sbjct: 204 VYDAVKASYRDRHFDASELLAEAAALIAEGHYAAVDRLRLVIVDDAHELTEATISLLRAL 263 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 A G ++ D + T + L++ + L+++ Sbjct: 264 A--TRGITIIGFGDPDLTTGSFRGAQPG-----------------VLSRWAEQLELENCQ 304 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 L +V + S + + S + + E Sbjct: 305 TLFLSSVHRHSASLRSAVIDVTQRVGVSGLIEQRKSMSVATE----PSSIHSFQLSTPAE 360 Query: 370 EAISIAIALRMSL---DENKKKSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTL 425 E IA LR + A+I +L + +L + SA + Sbjct: 361 EVAFIARHLREKHVLESVPWSRMAVIVRTGSLIPSLARQLRTLEVVTSVSSARSAVRDEF 420 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L LL + A + + + GF L R K AL AL Sbjct: 421 SVNGLIVLLELALERRTLDAASAVELLSSSVGGFDAVSLRRLKAALRHEALGAEIYDSAD 480 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + P + + A + ++ + T + Sbjct: 481 QLIAQALA-----------APAGFTSIETRVSRQAAAVAKNLHETAAAGAAGDTIEELLW 529 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 G S T + +L + + F + + Sbjct: 530 GAWQRSGLADRWFTQALGSGVVAEEANRHLDAVVALFSSAKRFVERRPDAPAN----VFL 585 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + +T+ + ++ + FD +++ G+ E VWP + L Sbjct: 586 TEWLSADVAEDTLAARSI-VDSVTVGTPASVIGQEFDVVVVAGVQENVWPNLRVRGSLLG 644 Query: 666 RVMQSDL----NLKTAEKYIGQAAHDFEMANGT-----RHLIYTRSLRENNIPTIASRWL 716 + L A++ + M R ++ T ++N + S +L Sbjct: 645 AHDLPRVLAGEKLAVADRRREVLHDELRMFAQAISRATREVLVTAVEGDDN---MPSPFL 701 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ------------------------- 751 + R+L + Sbjct: 702 TLIPSPDEPVRARPPLSLRGLVGVLRRELTTSANPGAAASSLARLAREGVPGADPSSWYG 761 Query: 752 ---PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P P S S ++ + P ++ ++ Sbjct: 762 LRSPSTTAPLVDLSEPDAKVRVSPSRMESFESCPLHWAIDQLGG-------STSNTASNL 814 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSF 867 GTL H + + ++ ++ ++ E + +H F Sbjct: 815 GTLIHGVAETATDFNAEALFKAVEDRWSEMSFEASWQSEAEKLRAKKLTQH-LATYLRDF 873 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 + E I + + +E L+G DR+++ I D KTG N Sbjct: 874 TA------NGGELISNEMGFTLPLEQA--LLSGKIDRVEMYGGTTAVIVDLKTGKNEPST 925 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 PQL+ A +G+ + + + L K + K++ DE Sbjct: 926 DKAVADHPQLAAYQLAFASGAVEGVPEGLENGGAKLVVLSPSAKTRDYVDPKQQPMNDEE 985 Query: 987 SEKSLKNLIE 996 E + +IE Sbjct: 986 LELFRQRVIE 995 >gi|88801967|ref|ZP_01117495.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P] gi|88782625|gb|EAR13802.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P] Length = 917 Score = 211 bits (537), Expect = 5e-52, Method: Composition-based stats. Identities = 144/1016 (14%), Positives = 287/1016 (28%), Gaps = 174/1016 (17%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + +P++RA L+ + LP ++ V++ + S L Sbjct: 18 SFENAVFILPSQRAKVFLKQTLKDKISVG--FLPETLNIEQFVQQVSELEKADSIQL--- 72 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L I+++ D P S A + + I+ Sbjct: 73 ---------LFHFYTIYKSLEKD-------------PDSFDTFSSWAFTVLQDFNEIDQN 110 Query: 163 EKK-------WEDLHALKNEKYGMWWLLA------ADFLKIASKYWT---ERLVELNASS 206 K D+ LK + FL+ + ++ L+E Sbjct: 111 LLKTKEIFIYLRDIQRLKKWSVSGTFTETELMKDHYSFLEKLNHFYPPLYAFLIEKKIGY 170 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + E+L K + G A L V LD + Sbjct: 171 QGLMYREACKKVDEYLEKNKRKKFFFIGFNALNKAEEFLFQKV------------LDTNN 218 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 W+ + + Sbjct: 219 ADIYWDLDAAFFNS-------------------------------------------NHQ 235 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + N + +I A + L D Sbjct: 236 AGTFIRKYTKEWKYYQRNALKTLSNSFSQPKKIEVIGASKNTTQLKYAGEILENFTDF-- 293 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 K +ALI AD L L + I+I+ G PL +S+ S+ Sbjct: 294 KNTALILADETLLPITLNSLPKNINAINITMGYPLKDIPTTSLFFSIFQLFVSQEKLQKT 353 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A E Y L+ ++ S + + + I + Sbjct: 354 A-----------VNEFYHKDVVRFLKHQSM-HPLFSKNTQSFVTSFITEIGEENYIFIRK 401 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 ++ L+ I T SI+D+ + + ++ + Sbjct: 402 KQLEVAVIKESAEVRELISSIFSPYT----------------SINDFLERILNLIRFLKE 445 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSK-IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + L E + + ++ + +LI ET+ + E Sbjct: 446 EVTG----LEKEYLFRFYTVFTQLKTLQKEYEYFTDLKTLTLFFKQLIASETLSFQGEPL 501 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 L ++G LE+R+L+F+ +IL NEGV P + +N F+ ++ L T + + Sbjct: 502 RGLQLMGMLETRVLDFENIILTSTNEGVLPAGSQQNSFIPFDVKLAFGLPTYREKDAIFS 561 Query: 686 HDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + F +++ + + SR++ +L ++ N+ + T Sbjct: 562 YHFFRLIQRAKNIFILYNTEHDAFGSGEKSRFVTQLEMMRPDIIQKNI--APKVIPSKTE 619 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + + +R E + S S + +++P + Y +++LK+ ++ Sbjct: 620 LKEVSKNEATLER-----LKELATKGISPSALTNYLHNPISFYKQKVLKIKEFDEVEETV 674 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHFEKENLPPHIDI 854 GT+ H + EL + + K L+ + F+ +L + Sbjct: 675 AFNTLGTVVHEALDELYRPFVGKFLSLTNVVNMQKIAKDLVIKHFKLQFKNGDLKTGKNR 734 Query: 855 IWRHLFHKISHSFLEHEEKIQSS----IEKIFVNIPA--KMAIESIGI--HLTGFADRID 906 + + ++ +FL E + ++ I ++ IE I L G DR+D Sbjct: 735 LIFEVANRFVANFLSKEIDLLQDEKNQLKIIATEENLATEITIEGIDFPIKLHGQVDRVD 794 Query: 907 LLKSGFVDITDYKTG-------DNP---KKETAQKLIDPQLSLEAAALKAGSFSQI-DCR 955 L +G + I DYKTG P + L Q+ L A Sbjct: 795 EL-NGVLRIIDYKTGMVAATNLRVPEFENVRDEKHLKAIQVLLYAYLFTKNKKHDFSQPL 853 Query: 956 KVANLFYIRLKQKF---KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 + + L F E + ++ L + + + F Sbjct: 854 EAGIYSFKNLHSGFLAIDFAPARKAPDTNITSEKLDAFIEELKKCILEIFTPTTGF 909 >gi|205372884|ref|ZP_03225692.1| ATP-dependent nuclease, subunit B [Bacillus coahuilensis m4-4] Length = 1158 Score = 211 bits (536), Expect = 5e-52, Method: Composition-based stats. Identities = 115/952 (12%), Positives = 241/952 (25%), Gaps = 134/952 (14%) Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 ++ K + D++ + + E + + L+I + + E Sbjct: 113 ASDKPGFVKQVEDMLIEFKRYLVEPETIMGETESRVLSD---KLHDLEIIFREFELATKE 169 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ + E I I G P ++ + + Sbjct: 170 KYID--SEDYLTLLSSSIERSSYLKDADIYIDGFHSFTPQEYAVIQALMERTKRVTIAFT 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 +D + P +L + ++ + S Sbjct: 228 IDRS-----------------------TQLPYGETKQLFRMTEESISKIESIAYSSQIQQ 264 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 +V+ + E + S V ++EA N R E IA +R Sbjct: 265 DPMIVLDTQARFKSQTIAHLERHWETRPSVPSNESSYVTIVEAANPRAEIEGIAREIRRL 324 Query: 382 LDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 E + AL + + + I + + ++ S L I Sbjct: 325 AREEGYRYRDIALFLRNSADYGDIIETIFYDYDIPFFMDQKRTMLNHPLIELVRSTLETI 384 Query: 438 FKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + A+ VK L K L + LE L + R Sbjct: 385 HSHWRYEAVFRAVKTDLLFPLDQSPKKLREKMDRLENYVLAYGIKGSSWTNKDRWRYRRF 444 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS----TCGNLSISD 552 + + R E + L + + + + L D Sbjct: 445 RGLELTDSPQTDEEREKEHEINELRLFISAPILRLGRRMKRGNTVRDYCISLYQFLEELD 504 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + Q+ D + ++ + L + +E K + + DI+ Sbjct: 505 IPQKLERFAQS-ANDRGDVIAAREHDQAWNAVVDLLDQYVEILGDSKISVKRFSDILDAG 563 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I+ + + + SRL N + G+N+GV P LS ++ Sbjct: 564 IETMKFSLVPPSNDQVIVADLELSRLANIRAGFVIGVNDGVLPSKFQDEGILSAEDRTSF 623 Query: 673 N------LKTAEKYIGQAAHDFEMANGTR--HLIYTRS-LRENNIPTIASRWLQRLLVLG 723 T+ + A T L + + + ++S +++R+ L Sbjct: 624 ANRGVQLAPTSTVKLEDEEFVAYKAFTTPSERLYISYALANDEGKALMSSPYIKRINELL 683 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------------RPKPFPPLEAQPRT- 769 + + +K + + P Sbjct: 684 PNIRTQLVVQEPSELHVKFQKSYASHPTVSISYVTTQLQLGLRGYQVAPVWWDVYNYYMK 743 Query: 770 --------------------------------------YSFSEIKQLINDPYAVYARRIL 791 S S ++ + P++ +A L Sbjct: 744 SSHYQEKVHRILTSLFYQNRTKKLSEETSKELYGESILGSVSRMELFNSCPFSHFASHGL 803 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDS 841 KL + D G LFH + + K + ++ +++ Sbjct: 804 KLREREM--YRLEAPDIGELFHGALKWISDMMNDQNRSWKDLNKADCRKLAQHAVEVLAP 861 Query: 842 HFEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK--MAIESIGI 896 +K+ L + I + E+ S + + + + Sbjct: 862 RLQKQILLSSNRHHYIKRKLELILERASLVLSEQAKVSGFTPVGLELGFGPNGELPPFAF 921 Query: 897 HLT--------GFADRIDL-LKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944 L G DR+D +K + I DYK+ I Q+ + Sbjct: 922 TLKNGIKMELQGRIDRVDKGVKDEQTFLRIIDYKSSQKDLDLTEVYYGISLQMLTYLDIV 981 Query: 945 -KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + Y + D + KK + D++ E+ K+ Sbjct: 982 LTHSEKLVQSKGYPGGVLYFHI-----HDPLVKSKKLLTVDQIEEEIFKSFR 1028 >gi|227536349|ref|ZP_03966398.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243725|gb|EEI93740.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 979 Score = 211 bits (536), Expect = 6e-52, Method: Composition-based stats. Identities = 138/1099 (12%), Positives = 318/1099 (28%), Gaps = 210/1099 (19%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF +E+ L+ L I KR L EI K Sbjct: 3 PFLKEVAEDLVAKFG-----------DHLQDCAIIFNNKRPATYLNQYLSEIYQ-KPFWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P + ++ + + ++ Y + L L K ++ P Sbjct: 51 PSVFTIQEFFAQSTHLNVADFY---------TQFFTLFNLYNELLIKESGKQIEMDKFFP 101 Query: 136 -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 LS A L ++ I ++++ L +++ +W Sbjct: 102 VAKTILSDFGQIDMDNVEADRLFKELEDIAVINQQFDFLTEEQHQFLSRFW--------- 152 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA-----GSTGSIPATARL 245 + + ++ + G T +L Sbjct: 153 ------------TSYTEGKHKRQQENFIRMWRRMPLLYRLFHDALTAKGLTTMGQIYRQL 200 Query: 246 MSTVANHPN-------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 ++P G I+L G + + + Y L Sbjct: 201 AHQTCSNPQFVNNFDKGRIILVGF-NALSQTEAIVFKRWQDQGKTLFYFDTDS--YYLND 257 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L + L + NE+ + +I + P Sbjct: 258 PLHEAGLFLRKNIDLYGLKNELNNQCSLIDELTTPT------------------------ 293 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINI 413 + + + +A + L ++ K+ + ++ AD +L + +I Sbjct: 294 -TVYKVQGQTTQAKILNQVLSEDYEQLKQDPSYGQTVIVLADESLLLPTLQTIPSDEQSI 352 Query: 414 ----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL----------VKHPLAKFGF 459 +++ G+ +++ + L+ + + L + HPL Sbjct: 353 QVNLNVTMGLGYTSSSLFGLADLWLSHQVDMMSPRSAEELNVPYKTVEKFLTHPLIAVDE 412 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 ++ A E + + + + ++ Sbjct: 413 KKRTQVLAAFVKEQLVVIPLERLVQQKGIFQFFFQKVRD--------------------- 451 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 A+ L + + L + + ++ T+ L + + + Sbjct: 452 ALSLTKELKSLLEYLAKRHLEQQNLRQLD--AELFVKTIQELNRMHDTLAQHIQT----- 504 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 S +I + ++ +V + S L ++G LE+R L Sbjct: 505 ----------------SGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLLETRNL 548 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA-NGTRHLI 698 NFD +++ GLN+G+ P+N+ N F+ ++ L E +A+ F + L Sbjct: 549 NFDHVVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPVLENQDAISAYIFYRLVQRAQKLS 608 Query: 699 YTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + SL + + SR+L++L +F + + Q Sbjct: 609 FVYNSLTDESNTGEPSRFLKQLEFESNFEF----RYQDQHLQIKVEDQQELVIPKTTVIM 664 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + RT S S + I +P + + + ++ + + + GT+ H + Sbjct: 665 DKLGLYLSGNRTLSASALTTYIANPIDFFYKYVAEISEPEEVNEVVEANNLGTILHGAME 724 Query: 818 ELIKKRINKN---TPEINHL----MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 + + ++ +PE + ++I+ +F KE P + I ++ + ++ Sbjct: 725 DFYNQLKAESNFISPERIAQKRKDLTKLIEHNFIKEFYPENTKKIHFTGIQRVIMAIVKE 784 Query: 871 -------EEKIQSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGFVDIT 916 ++ + + + + E IH+ G DR+D+ + G I Sbjct: 785 YIHIILDHDERSAPFTILQMEEEMIVPFEFNDSYGRKQIIHMKGIIDRVDIGQDGVTRIV 844 Query: 917 DYKTGDNP-KKETAQKLID----------PQLSLEAAALKAGSFSQIDCRKVANLFYI-- 963 DYKTG + ++ ++ + Q + I + Y+ Sbjct: 845 DYKTGSDELDYKSLEEAFNTDGKKLNKALVQTLFYTYVFEKA--KNIRNVEPN--LYVVR 900 Query: 964 RLKQKF----------KIDCITNDKKKYSADELSEKSLKNLIEIVT----LLQNGEQPFI 1009 ++K + + + + + +E++ L + + PF Sbjct: 901 KMKNGGTLFQTKVEFTDDKNKVKKADQDLSGDFLAEEKERFVELLASKLQELFDPQVPF- 959 Query: 1010 SHLRLSEKSNIQSEYDHLA 1028 + ++ I S Y L Sbjct: 960 -RVSQHSENYIFSPYKSLM 977 >gi|311067548|ref|YP_003972471.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus atrophaeus 1942] gi|310868065|gb|ADP31540.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus atrophaeus 1942] Length = 1166 Score = 211 bits (536), Expect = 7e-52, Method: Composition-based stats. Identities = 115/1041 (11%), Positives = 270/1041 (25%), Gaps = 151/1041 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + G I + S + ++ P V++ + L +LI Sbjct: 44 TFLMEYELAKTPGIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTSTGIQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTEQVERMLTEFKRYCLEPEDIRRMIESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 Y +L L I + + L + L+ + + + Sbjct: 148 TATDYRDERVLTDKLHDLYILYQQMEKSLENQYLH--SEDYLTLLAEQVPYAEDLKGAHV 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R+++ + D + + + Sbjct: 206 YVDGFYQFTPQEFRVLTQLMAQAEHVTFSLTADKPSHVQAPDELDLFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L + + R + +K + Sbjct: 260 ---YQLHQAASELHLD-------------ITNRELTETKRYQQTPELAHLEAMYDARPAV 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + +++A N R E IA + + + K A++ + + Sbjct: 304 PFLEKQEAFTVMQAANRRTELEGIAREIHALVRDKGLRYKDMAILARQPEDYKDMVKEIF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-S 465 + I I + + S L+ I + A+ VK L K + Sbjct: 364 ADYEIPYFIDGKASMLNHPLVEFIRSSLDVIKGNWRYEAVFRCVKTELLFPLDRPKNIIR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH---WQSRLSEEDKELAVL 522 + LE + V R + ++ + + ++ V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTRGDRFVYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + + T + + L +D Q D R + + Sbjct: 484 PLFRLQKRMKQAKTVQDMAEALYLYLEETDIPLKLDQERQRAEEDG-RIIEAQQHNQAWD 542 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + L + +E + + + ++ + +F+ SR+ Sbjct: 543 AVIQLLEEFVEMMGEDEISLSLFQQMMETGAESLKFALIPPALDQVFVGNMDLSRMYGTR 602 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR- 695 + G N+GV P + LS + + L + + H MA + Sbjct: 603 CTFVIGANDGVLPARPEDDGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMALSSPS 662 Query: 696 -HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQC---------------- 737 L + + + T+ S ++RL L L + Sbjct: 663 DRLYVSYPIADAEGKTLLPSTVVKRLTELFPEHQERLLTNEPEQVSDCEQLLYLVNKSVA 722 Query: 738 ---------------------YLDWTRKLDYTTK--------------QPHYKRPKPFPP 762 + + ++ + + Sbjct: 723 QSYTASQFRLWLKEYDISDVWWSAYNVLMNEPDRLNSKKLFSSLFFRNEVKPLERAVSRQ 782 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 783 LYGEHIHGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDR 840 Query: 823 RINKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LE 869 + + ++++ ++ L + + KI + Sbjct: 841 LREQKLDWRDLTKDQCNKFSYEAVERLAPKLQKEILLSSNRHYYVKEKLQKIVARVSGIL 900 Query: 870 HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916 E S + + + K + + L G DR+D +S + I Sbjct: 901 SEHAKASGFAPVGLELGFGGKGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960 Query: 917 DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 DYK+ + Q+ ++ + A + Y + D + Sbjct: 961 DYKSSDKGLDLSEVYYGLALQMLTYLDLSITYSADWLGMKATPAGVLYFHI-----HDPM 1015 Query: 975 TNDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1016 IQASVPLGLDEIEQEIFKKFK 1036 >gi|317502901|ref|ZP_07960998.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665984|gb|EFV05554.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 923 Score = 210 bits (535), Expect = 7e-52, Method: Composition-based stats. Identities = 90/523 (17%), Positives = 175/523 (33%), Gaps = 57/523 (10%) Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + + +N + TL + +I + A+ + +I Sbjct: 412 AWIVDILQEIGKNYTAEGEDAPLVHESIFRTYTLFNRLDALI-ACGDLVADFNIYNKLIN 470 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 +LI +V E L I+G LE+R L+FD +++ NEG PK F+ ++ Sbjct: 471 QLISSTSVPFHGEPIVGLQIMGVLETRNLDFDHVLVLSCNEGNMPKGVNDTSFIPYAVRK 530 Query: 671 DLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFF 728 L T + + A+ F + T + + T SR++ +L+V G + Sbjct: 531 AFGLTTIDNKVAIYAYYFHSLLQRATDITLTYNKAASKTATGEMSRFMLQLMVESGQNIH 590 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 Q L + + + + Q S + I + Y R Sbjct: 591 FKNLNASQNPLQ--------SIKKPIVKNQEVMRNIYQTDRLSPTAITTYLRCQMRFYYR 642 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---------TPEINHLMKQII 839 I + + + + D G +FH + + NK+ + L+ +II Sbjct: 643 YIAGIKEPDNEEDEIDNRIFGNIFHRAAELFYESKCNKDVVQKQDIINALKDKSLLPRII 702 Query: 840 DSHFEKENL---------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + F ++ + II R + + L ++K+ + + P +M Sbjct: 703 EEAFREKLFNVKDDKNITYNGLQIINRQVIIEYIKRLLAIDQKLTP-FSILGLEKPIEMP 761 Query: 891 IESIG------IHLTGFADRID-LLKSGF--VDITDYKTGD--NPKKETAQKLIDP---- 935 + I L G DRID + ++G + + DYKTG ++ + +P Sbjct: 762 FDINTQEGLKQISLFGNIDRIDKIDENGSTCIRVVDYKTGSNDKTSIKSVDDIFNPEKIE 821 Query: 936 -------QLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADE 985 Q L + L + V+ +L +I+ I Sbjct: 822 SHSDYYLQALLYSIMLYNNRNLNPNHLPVSPSLLFIQHATGDDYTPILKFGKDIITDVSI 881 Query: 986 LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +E L L E++ + N + F + + K Y + Sbjct: 882 YTEDFLTKLKELIEDIFNPDIAF--NPTENTKRCQYCPYREIC 922 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 57/441 (12%), Positives = 123/441 (27%), Gaps = 91/441 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + +L+ + L+ +TI P KRA L E + ++ K P Sbjct: 4 FLQYVAEDILHKYGTD-----------LSRITIIFPNKRASLFLNEELVRLS-NKPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129 ++ ++ + + L + ++ ++ E W L D Sbjct: 52 NYLTISELFRAHSSKSVGDQIKL---ICDLHKIFNECTGSDETLDHFYGWGQVLLADYDD 108 Query: 130 LYPESPLSLPI--------SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + + I +A +L +++ ED+ + E++ W Sbjct: 109 IDKNMGDAHLIFKSIKDIHEFDDASYLNDEQKELLKKFFANFT--EDITSKLKERFINLW 166 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + + ERL + + ++ E + I G Sbjct: 167 SN----FEEIYTKFNERLSQQGLAYEGALYREVVGKE---QLDFHSDIYIFVGFNMMQTV 219 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +L + W+ + T+ + L + Sbjct: 220 EQKLCERLLKQGK------------AKFYWDFDDYFMSEKHGLKHEAGTYIRQYLKYFPN 267 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD + + + D+ Sbjct: 268 ELDTTDKAIYCN---------------------------------------FERPKDITY 288 Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A E +A I+ L+ +++A++ AD NL V L+ ++I+ G P Sbjct: 289 LSATTENIQARYISTWLKDPKRVAAGRRTAIVLADENLLPTVIHCLSPNLKYVNITTGYP 348 Query: 421 LSTTLHSSILTSLLNAIFKLN 441 L T +S + L+ Sbjct: 349 LQHTPIASFVRLLVMLQTMGY 369 >gi|254478457|ref|ZP_05091834.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM 12653] gi|214035628|gb|EEB76325.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM 12653] Length = 1200 Score = 210 bits (535), Expect = 7e-52, Method: Composition-based stats. Identities = 130/939 (13%), Positives = 267/939 (28%), Gaps = 127/939 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K +++ I + + L + + + L + + E L N Sbjct: 158 GFVKKISEAITEFKRFDVTPFQLIDASEKIEKLGLKEKLEDLALIYSSFEEVL-HKNYID 216 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + L I G TG P +++ + + V LD I Sbjct: 217 EEDELDLLSKKLEKSLQ-FEGAEFWIDGFTGFTPKQYKVIEKLLKKASRVSVTLTLDPSI 275 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + TH Y+ K + L + + G E + Sbjct: 276 D------------------SIDPTHLFYTTKKTEEKL---IKICETNGISVEEPVNLNKG 314 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 I K F + + + ++++ +A N E +A + + + Sbjct: 315 IPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRDEH 374 Query: 385 -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + T D + + VK + +GI I I ++ + S+ K Sbjct: 375 MRYSDIVVATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIVYVISIFEIYLKNWS 434 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K E L E L + +D Sbjct: 435 YESVFRYLKTGFTGIDKEEINLL------ENYVLANGIKGNKWKERWEYRIDYKTDSLLM 488 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 E +E L ++ + K L + + ++ Sbjct: 489 EEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLPEKIEKFIE 548 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + + + +++E K + ++ +I+ D + Sbjct: 549 EFKNRGE-FDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDEYQIASIP 607 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLK 675 + + + N L L G N+GV+P ++ + S + +L+ Sbjct: 608 PALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSLDLELDRD 667 Query: 676 TAEKYIGQAAHDFEMANGTRHLI-YTRS-LRENNIPTIASRWLQRLLVLGG--------- 724 T K + + + + S + RL + Sbjct: 668 TKAKVFEEQFLVYTALTSASEFLKISYPIADHEGRSLRPSIIISRLRRIFPKIKVSTNIV 727 Query: 725 --TDFFDNLKKRGQCYL---------------------------------DWTRKLDYTT 749 +NL + +W +KL+ T Sbjct: 728 EMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWLEVYKWYRTKDEWKKKLEDTL 787 Query: 750 K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + Q P L + +S S +++ P+A + + LK Sbjct: 788 EGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPFAYFVQYGLKAKERK--IYGF 845 Query: 804 DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEK---ENLPPHID 853 + D G HN++ E+ K + + N + I++ +K L Sbjct: 846 EPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDIIVEEMVDKIPGYILKSSSR 905 Query: 854 IIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900 + ++ ++ E +SS + + + I I L G Sbjct: 906 YRYLANRLKRVLSKAVWIISEHMKRSSFVPLGHEVAFGENQKYPPIKIVLSNGEEIKLIG 965 Query: 901 FADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DR+D+L+ G V I DYK+G ++ QL + A+ +F Sbjct: 966 RIDRVDVLEKEGETYVRIIDYKSGDKTLDLSDVLYGLELQLLVYLDAILESAFEGKANLS 1025 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A +FY ++ D I K S +EL ++ +K L Sbjct: 1026 PAGIFYFKID-----DPIVRADKDISDEELYKEIMKRLR 1059 >gi|20806784|ref|NP_621955.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4] gi|81482923|sp|Q8RCZ1|ADDB_THETN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|20515246|gb|AAM23559.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4] Length = 1159 Score = 210 bits (535), Expect = 7e-52, Method: Composition-based stats. Identities = 130/939 (13%), Positives = 267/939 (28%), Gaps = 127/939 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K +++ I + + L + + + L + + E L N Sbjct: 117 GFVKKISEAITEFKRFDVTPFQLIDASEKIEKLGLKEKLEDLALIYSSFEEVL-HKNYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + L I G TG P +++ + + V LD I Sbjct: 176 EEDELDLLSKKLEKSLQ-FEGAEFWIDGFTGFTPKQYKVIEKLLKKASRVSVTLTLDPSI 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + TH Y+ K + L + + G E + Sbjct: 235 D------------------SIDPTHLFYTTKKTEEKL---IKICETNGISVEEPVNLNKG 273 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 I K F + + + ++++ +A N E +A + + + Sbjct: 274 IPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRDEH 333 Query: 385 -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + T D + + VK + +GI I I ++ + S+ K Sbjct: 334 MRYSDIVVATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIVYVISIFEIYLKNWS 393 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K E L E L + +D Sbjct: 394 YESVFRYLKTGFTGIDKEEINLL------ENYVLANGIKGNKWKERWEYRIDYKTDSLLM 447 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 E +E L ++ + K L + + ++ Sbjct: 448 EEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLPEKIEKFIE 507 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + + + +++E K + ++ +I+ D + Sbjct: 508 EFKNRGE-FDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDEYQIASIP 566 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLK 675 + + + N L L G N+GV+P ++ + S + +L+ Sbjct: 567 PALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSLDLELDRD 626 Query: 676 TAEKYIGQAAHDFEMANGTRHLI-YTRS-LRENNIPTIASRWLQRLLVLGG--------- 724 T K + + + + S + RL + Sbjct: 627 TKAKVFEEQFLVYTALTSASEFLKISYPIADHEGRSLRPSIIISRLRRIFPKIKVSTNIV 686 Query: 725 --TDFFDNLKKRGQCYL---------------------------------DWTRKLDYTT 749 +NL + +W +KL+ T Sbjct: 687 EMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWLEVYKWYRTKDEWKKKLEDTL 746 Query: 750 K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + Q P L + +S S +++ P+A + + LK Sbjct: 747 EGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPFAYFVQYGLKAKERK--IYGF 804 Query: 804 DRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEK---ENLPPHID 853 + D G HN++ E+ K + + N + I++ +K L Sbjct: 805 EPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDIIVEEMVDKIPGYILKSSSR 864 Query: 854 IIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900 + ++ ++ E +SS + + + I I L G Sbjct: 865 YRYLANRLKRVLSKAVWIISEHMKRSSFVPLGHEVAFGENQKYPPIKIVLSNGEEIKLIG 924 Query: 901 FADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DR+D+L+ G V I DYK+G ++ QL + A+ +F Sbjct: 925 RIDRVDVLEKEGETYVRIIDYKSGDKTLDLSDVLYGLELQLLVYLDAILESAFEGKANLS 984 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A +FY ++ D I K S +EL ++ +K L Sbjct: 985 PAGIFYFKID-----DPIVRADKDISDEELYKEIMKRLR 1018 >gi|290968023|ref|ZP_06559572.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp. type_1 str. 28L] gi|290781929|gb|EFD94508.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp. type_1 str. 28L] Length = 1124 Score = 210 bits (535), Expect = 8e-52, Method: Composition-based stats. Identities = 121/1014 (11%), Positives = 263/1014 (25%), Gaps = 169/1014 (16%) Query: 55 RAIQELR---------SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 RA L E K + + VS Sbjct: 30 RAALFLVPDQATYTMERRLAERMPGKGYTGIQVVGFSRLAYLVLQERGCKR----AAVSE 85 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + R+L L RL+ ++L ++ A ++ + I+ + Sbjct: 86 LGRMLVLQRLLRQMESEL-------------TVLRKAAVQPHFSETVGTFIEECRSFCVS 132 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 L A+ + + +T L + + AE ++ Sbjct: 133 PAALQAVATTVSDPSLADKLQDIARVYEAYTRVLTAR--FGNADDLLTALAAEIKYAGFL 190 Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 P+++ G P +++ + + V LD N Sbjct: 191 QHIPVLVDGFQWFTPQQLQVLEQLEKYAGSLTVTLSLD-------------------GEN 231 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 + + R S I + + Sbjct: 232 LASQAGETALFHRSYETYGALRRLFPH-----------SEQICLPPRLTNGAARMAHAFF 280 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRV 402 + + + + E ++ E +A + + + ++ + Sbjct: 281 RPVPAVRSRATAGIHIWECTSKEAEIEGVAKKIIQLCRQGYRYKDFLLVVRTSEEYNQLA 340 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + + + I + P+++ + SLL + A+ L+K L + Sbjct: 341 ERIFSMYRIPLFSDYQRPMASHPIVETVVSLLQVFRTSWTYEALFQLLKSDLFPISRDDA 400 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 Y I + L + +R+ + ++L + Sbjct: 401 DALENYCLA-----------YGIQGGQWLADKAWYDDGTDARTASGINRIRRQVRDLLLP 449 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 T L T+ T + L + + D E+ K Sbjct: 450 CWQESRSSHT-LQTWCTLLYTWLKRLQVPATLRRWRQ----EDADAGCPGEAKEHEQVWK 504 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 L + +I+ + ++ I+ + + + L Sbjct: 505 ELLAFLQEIVTLCGEEEMGLEDFAVILEDGLKTLKFSLIPPTLDHVTLTSVERGYTLQGK 564 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR- 695 T+ + G+N+G++PK + + L + Q + F +A Sbjct: 565 TVFICGMNDGIFPKRNREEGLFHDGERQQLEKAGLYLAPGSRFRSLQEKYLFYLAVTRSL 624 Query: 696 -HLIYTRSLREN-NIPTIASRWLQRLLVLG------------------------------ 723 + T +L + S W+++LL G Sbjct: 625 QEVYLTYALADESGAAREPSLWIRQLLERGYVDGVRTVSDGISPGEEAAAITSAEAAVRL 684 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDY--------------------TTKQPHYKRPKPFPPL 763 G+ W D P Sbjct: 685 LPGQLQPAVDGGEVAPVWWALYDQLLRTSQKQAVRQAVRGLFHTNVAAPLTASVVRRLFA 744 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S ++ +Q P+A +AR L+L+ + D G L H + + Sbjct: 745 PQGILHGSVTKFEQYGTCPFAFFARYGLQLEARQ--RYRFVAPDLGLLVHGALKYMGDAL 802 Query: 824 INKNTPEINHLMKQIIDSHFEK-ENLPPHID-------IIWRHLFHKISHSFLEHEEKIQ 875 + + + M+QI + + E P + +RH+ ++ + + +++ Sbjct: 803 LREGKQWRDLEMRQIPEYCRQATEVTAPSVRQDILMSNAYFRHIKERLIQTLIRTVRRLR 862 Query: 876 SSIEKI-----FVNIPAKM----------AIESIG-IHLTGFADRIDLLKSGF---VDIT 916 E + I + S G + ++G DR+D+L+ G V + Sbjct: 863 EFSEVSNFQMKGLEIAFGGKNGVWEPLQFTLPSGGKVSISGQIDRLDMLQEGEISYVAVI 922 Query: 917 DYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 DYK+G P + +D QL + A + Y ++ Sbjct: 923 DYKSGRKEPALQPVFLGLDLQLLTYMIVALRQLGEK---AVPAAVLYCYVRDDK 973 >gi|84494609|ref|ZP_00993728.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] gi|84384102|gb|EAP99982.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] Length = 1047 Score = 210 bits (535), Expect = 8e-52, Method: Composition-based stats. Identities = 131/1032 (12%), Positives = 278/1032 (26%), Gaps = 124/1032 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 + L+ + + R D + ++R LR + G ST P+ + Sbjct: 45 TIAVELVAAHVADGVRPD--------QCLLLASSRRDAARLRDQVTARVGGTST-EPLAR 95 Query: 80 SLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + A L + P + S ++ + L L+ + + P P + Sbjct: 96 TFPSFGFGVLRAAAALDGDPPPRLLSGPEQDVVLRELLAGHASGE-----SVGPRWPERV 150 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + L D++ +DL L W+ A+ L+ + Sbjct: 151 KL-ALPTRAFRAELRDLLMRAVELGLDPDDLLELGVRHGRDEWVAGAELLREYDEV--TA 207 Query: 199 LVELNASSPVG-----YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 L+ A P + + +++ + PA RL+ + + Sbjct: 208 LLTPGAFDPAWILGAAASALAGDDDLARSLTAGLRLVVVDDAQEMTPAALRLLEVLRHVA 267 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 A ++ D T + + L Sbjct: 268 PAAGIVLIGDPDSATQTFRGGDPTLLA---------------------------REWAVL 300 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF---SDVALIEADNEREE 370 G+ + RS + + L + + +L + + + + +E Sbjct: 301 GDGPTVVLPRSHRLPEGLLSVTNAVAGHIGVLGDVAHRRAEACVEGGSSEVHLLRSASQE 360 Query: 371 AISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLH 426 A IA LR + D A+I ++ + ++ L G+ + A +P+ Sbjct: 361 AGFIAARLRAAHLLDDVPWSDMAVIVRGQSRSAGLRRALQSSGVPVSAAEAELPVRDEPS 420 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 L +LL + L A V L P + ALR + Sbjct: 421 VRPLLTLLQVVADLALGRAEDVPVDVALDVLVSPLGAADPVELRRLRRALRREELDAGGS 480 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 ++ + + + R + + V+ + + Sbjct: 481 RTSDELIAEVLLRPAVHDRLGIEGRSVQRIGRMIRAGVEACGAVEGEWGPGVSAEGILWA 540 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 S R +L ++ + + + S Sbjct: 541 MWDASRLAGQWRETALGGGAAGARTDRDLDAVLAVLRAAATYGERLPGSSPEAF----LQ 596 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ + + G+T+ + ++ +L + + +++ G+ EG WP + L Sbjct: 597 HVLGQDVPGDTLAARAPTGESVSLLTPQSAAGRQWPLVVVAGVQEGSWPDLRLRGSLLGS 656 Query: 667 VMQSDL---NLKTAEKYIGQAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQR 718 D+ + HD + ++R + + Sbjct: 657 QDLVDVVRGRAGGHRAALAAVRHDETRLFHVAVSRASRSLLVTAVRSEDEQPSPYLDVVD 716 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------------PKPFPP 762 L + R L +R P P Sbjct: 717 PLPDDADRREASDWARPVTLPALVGALRRDVVSDDMRRRGGAITGLARLARAGVPGADPA 776 Query: 763 LEAQPRTYS---------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 S S I + ++ + + D Sbjct: 777 SWWVLHGLSDERPRRGPADPVRVGPSAIDGFTSCQLKWALTKVGGDGPM------IGQRD 830 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHS 866 GTL H I E M+ +D + + LP + + Sbjct: 831 IGTLIHEIAAE---------GDADAATMRATLDERWPRLGLPQGWSTDLKRRQAEGMVDR 881 Query: 867 FLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924 ++ + +++ K+ + I L+G DR+D+ SG V + DYKTG + P Sbjct: 882 LARFFDENTAVGWQRLAAESRMKVEL--GRIVLSGTVDRLDVSPSGEVRVIDYKTGSSKP 939 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 K + QL A+ G F ++ + + + + + + + Sbjct: 940 KASDVPRHG--QLGAYQLAVIEGGFEDVEVPQSSSGAALLHVGKAAGKATTMQVQPPLAE 997 Query: 984 DELSEKSLKNLI 995 DE + LI Sbjct: 998 DE-DPGWAERLI 1008 >gi|134093953|ref|YP_001099028.1| hypothetical protein HEAR0707 [Herminiimonas arsenicoxydans] gi|133737856|emb|CAL60901.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 854 Score = 210 bits (535), Expect = 8e-52, Method: Composition-based stats. Identities = 145/993 (14%), Positives = 277/993 (27%), Gaps = 149/993 (15%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 V T IQ L++ + I P + SL + + + L + + +RL Sbjct: 2 LVSTFAHIQLLKNALARQIDG-AFIPPTMTSLSEYIRQ-------LPPDGATATAASERL 53 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + L ++ L + + LA+ L + D + Sbjct: 54 MSLY-----------ADLRQHAWLKKLFSARRNTDLLPLAEILLALSDELTQAMLPS--- 99 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229 + W A + L ++ S + +++ + Sbjct: 100 LKASPDAGYARWQAALEQLSPVARNL--------LSDETQLVWTIWKSQLDASDANVIRY 151 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 RL+ V + + + + +T + Sbjct: 152 ----------AQMMRLVQQVEHIQQPLFWISPVAPDAMEQAFLDAYGARQALTVLTLDWH 201 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 H + + Sbjct: 202 AH-------------------------------------SVHSTYAAAWPEMLVDEMDSA 224 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 + L A N EA + A + L + K A++ DR +ARR++ L R Sbjct: 225 ALSLATPPGLKLHAAQNMEAEARAGAQTVIDWLQQGKTNIAIVAQDRVVARRIRALLERA 284 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 I + G LSTT +S + + L + + + + +K P +K Sbjct: 285 QIVVADETGWKLSTTRAASAIAAWLELVAARAETVGLLDFLKSPFVFADMADKAELVMV- 343 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 ++ + D A ++ Sbjct: 344 ----------------------------SEIALQRAKVLSGWEAVSDALTAAPAAQKMMT 375 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + G ++ +W T L + L + G L L Sbjct: 376 LLA------QQAAGFTGRKTLCEWIAATQQMLVTLG-----MRDALQADAAGAQLLQLLQ 424 Query: 590 KIIETG--SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + + EW + ++ + + + +L +RL +FD ++L Sbjct: 425 DVAQDCVQVGHTFSFAEWRAFLNLQLEAKAFVQVNQDK-RVVMLPLNGARLRSFDAVLLV 483 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN 706 G + P + F + V++ +L L T E Q D ++ + +N Sbjct: 484 GADAEHLPSQPMETLFFANVVRRELGLATRESRQRQQLRDVTELLSANDCVVLSWQAHKN 543 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 P S W++RL + L + + P P P Sbjct: 544 GEPNPVSPWIERLELCLARACLAPL------AKHEVQIAPRHLQPTPVLMPAPAAPQLL- 596 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P+ S S L+ PY +A R+L L I P++ D G H I+ + + Sbjct: 597 PQKLSASGYNSLVACPYQFFATRMLGLSGIDDVSDMPEKRDYGDWLHKILAQFHQTLQEA 656 Query: 827 --NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFV 883 E L++QI D F E + + + K ++LE + +S + Sbjct: 657 PVPLAERAPLLQQISDRIFAHELDKSAAALGYYARWQKAMPAYLEWIAERESQGWHFVLG 716 Query: 884 NIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYK-TGDNPKKETAQKLIDPQLSLE 940 + + E I L G DR+D SG + DYK T ++ ++ D QL Sbjct: 717 EEKFEKLLRWEDGEIVLHGRVDRMDENASGERAVLDYKSTNQGALRDKLRQGEDHQLPFY 776 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + ++ Y+ L+ + E+ +IV Sbjct: 777 GL---------LSGTALSAALYVPLEATRDKIKEVEAPDYEVWQQNLEE------QIVRN 821 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 +Q E + L R W Sbjct: 822 MQAITHGAPLPATGPEPVCQYCDVRGLCRKGAW 854 >gi|270159331|ref|ZP_06187987.1| putative exonuclease [Legionella longbeachae D-4968] gi|289165849|ref|YP_003455987.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150] gi|269987670|gb|EEZ93925.1| putative exonuclease [Legionella longbeachae D-4968] gi|288859022|emb|CBJ12950.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150] Length = 861 Score = 210 bits (534), Expect = 9e-52, Method: Composition-based stats. Identities = 90/709 (12%), Positives = 218/709 (30%), Gaps = 99/709 (13%) Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN-LARRVKLELTRF 409 ++++ S + ++ A +++EE + + L + L E + ++ + + ++ LT Sbjct: 219 DLKEKSSKIEMLAAQDDKEEYQQLMLWLHLKLQEGNHRIGVVVPNLEKESNLLQRILTNH 278 Query: 410 GIN--IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 +IS G PLS + LN + L++ P + E Sbjct: 279 FEPTLFNISLGQPLSDFPLVAHALCWLNLDDFTLSQHQASLLLQSPYLGYSKEEFIGRAE 338 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 ++ R ++ + Sbjct: 339 YLQEGILLERHVI--------------------------------------PLKDFINEL 360 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 L + + + +W L L+ + L + ++ + ++ Sbjct: 361 HYYTPKLSQLLSLLIAYPAMATPQEWVCLFQDRLRVMGFPGDYGLNSENYQCLNRFITLF 420 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 E ++ + T+ + ++ + + G LE+ FD+L + Sbjct: 421 DEFRQLAVFNTNLTKAEALEAFHH-LTHHTIFQAQKNNAPIQVTGLLEASGCEFDSLWVM 479 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLIYTRSLR 704 GL + P + F+ +Q +L++ E+ + A + ++++ Sbjct: 480 GLTDQCLPNKVRLSAFVPSYLQRELSMPHSLPERELQFARQILQRLQKSADSVVFSFPQL 539 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + + P + + ++ + + + P L Sbjct: 540 QGDNPNLPCSLITTFPHFTLLPEPNSSIYQPKYIT--------------VEEHFSLPVLP 585 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + T + + P+ +A L+ + +RG L H ++ L + Sbjct: 586 EERITGGTAILSNQAKCPFKAFAEHRLRAKAPLQTTDGLNHQERGKLIHKVMELLWQALE 645 Query: 825 --NKNTPEINHLMKQIIDSHFEKE---------NLPPHIDIIWRHLFHKISHSFLEHEEK 873 K H++ + ID +L + + ++ +++LE E++ Sbjct: 646 SQEKLKLLAPHIVDRYIDEAIHTALSHLNQRINSLSASLQEVESARLKRLIYTYLEWEKQ 705 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKL 932 + + + + I + DR+D + + DYK+ K ++ Sbjct: 706 RAP-FTIAALEHSYSINLAGLDIQV--RIDRLDQVADKKW-VIDYKSTLPTSKPWHEERP 761 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-----------KIDCITNDKKKY 981 +PQL L A ++ ++LK I+ IT+ KK Sbjct: 762 KEPQLLLYALL----------DDQINTFLLMQLKSGKIYCAGLSEEKQAINGITSLKKDE 811 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + E + K L + Q Q + + +Y +L R+ Sbjct: 812 TWTECRKTWQKQLTHLAMEFQ---QGYCPPQPAHLSICQRCDYQNLCRI 857 >gi|297616710|ref|YP_003701869.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM 12680] gi|297144547|gb|ADI01304.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM 12680] Length = 1147 Score = 210 bits (534), Expect = 1e-51, Method: Composition-based stats. Identities = 119/969 (12%), Positives = 262/969 (27%), Gaps = 131/969 (13%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P + + + + L RL+ R++L + A LA I ++ Sbjct: 85 PFLGDNGKRMVLCRLLEENRHRLKAFAR-------------VAKQPGFYDRLAQAIGELK 131 Query: 161 TEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 K EDL L + + L + + + + L E P Y R Sbjct: 132 AYHVKPEDLQQVLASWQGESLAKDKLADLLVIYRGFQQVL-EGRLIDPDDYLDFCARKIG 190 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 E + + G G P ++ ++ + L LD T Sbjct: 191 ESQTC-QGSEVWVDGFKGFTPQEYEVLVSLLKTSSRVNFLLCLDPG-----------ALT 238 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + L E L N + + + L + Sbjct: 239 KTVKREEVFFCTYNTYTRLLQIANRAGVEVEPALILGENGLPRFRENEALAHLEREFPAW 298 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396 + L+ A++ R E ++A + + + A++ D Sbjct: 299 PGRVFSGKV--------QGLKLVAAEDRRAEVEAVAREILALCREREYRFRDIAVLVRDL 350 Query: 397 NLA-RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 ++ V +G+ + + P+++ ++ S L + + A+ +K L Sbjct: 351 SIYGELVPQVFQVYGLPCFVDSRRPVTSYPLIELVRSALEVVLSGWSYEAVFRFLKTDLV 410 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 E + +G++ + + T +R+ E+ Sbjct: 411 PVSREEVDELENYVLAHGI--KGSRWADGKLWAYRRRYSLGEEDPEETADLARINRIREK 468 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + T + L + + + E Sbjct: 469 AVAALAWFEEQVKNSPTA-GSVTRALYLLLEQLGVRKELEAWSRAAEAEGRLEE----AA 523 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 E L ++++ + E++ ++ + G T+ +F+ Sbjct: 524 EHAEVYNQFLGLLDEMVDALEDYPVSLEEYLRVLDAGLGGLTLGLIPPGLDQVFVGSLER 583 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAEKYIGQAAHDF 688 SR + G+N+GV P+ ++ LS +++L + E+ + + Sbjct: 584 SRPSEVKAAFILGVNDGVLPQPPRRDGLLSEKERAELAIFGVELAPGRQERLFEEQFLVY 643 Query: 689 EMANGTRH-LIYTRSLRENNIPTI-ASRWLQRLLVL--------------GGTDFFDNLK 732 L + + + AS + RL + GG + Sbjct: 644 TGLTRASEYLWVSYPRADEEGRAMNASPVIDRLREVFPSIEVATVSLEPPGGAGDLAYVA 703 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----------------------- 769 G+ +L + Sbjct: 704 VPGRALSFLAARLREAGSLGALDPVWAGAYKWLKKNHTQALHRVLEGFFYRNEEQPLGGD 763 Query: 770 -----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 S S+++Q + P+A + R L+ D GT FH+ + Sbjct: 764 LAQRLYGYPLHLSVSQLEQFASCPFAYFIRYGLRAKEKET--AKIRPADLGTFFHDALKR 821 Query: 819 LIKKRINKNT-------PEINHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISH-- 865 +++ + E L +I+ +I Sbjct: 822 FVEEVKIRRLAWETVGRDECRELADEIVSEMVTAMESEMQTLSERRRYLVSKLKEIVEVS 881 Query: 866 SFLEHEEKIQSSIEKIFVNIPAK------MAIESIGIHLT--GFADRIDLLKSGF---VD 914 ++ E + + + + ++ + L G DR+D +G + Sbjct: 882 AWAVAEHLACGDFRPVGLELEIGRNGIPPLVVDDGDVKLKLVGKVDRVDAAPNGEGVYLR 941 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+G K + + QL A ++ + A +FY +K Sbjct: 942 VIDYKSGSTGFKLDEVYYGLRLQLIAYLDAVVENAAVLWGKEAVPAGVFYFEVKNPLIQG 1001 Query: 973 CITNDKKKY 981 + +K Sbjct: 1002 NVDGPEKAE 1010 >gi|291562494|emb|CBL41310.1| ATP-dependent nuclease subunit B [butyrate-producing bacterium SS3/4] Length = 1182 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 122/1027 (11%), Positives = 278/1027 (27%), Gaps = 136/1027 (13%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 + P + +Q + E + + T+ I S + F+ L + + + Sbjct: 36 VVTPEQATMQA-QKEIVRLHPNHGTLNIDIVSFERLAYRIFSELSLPQ---PEVLDDTGK 91 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 + L RL ++L ++ S N + ++ + ED Sbjct: 92 NMVLRRLAGEKMDEL-------------TMFSSHLNRPGFISEIKSMLSELYQYGATPED 138 Query: 169 LHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 L A ++ +++ + + E E + + + ++ A+ Sbjct: 139 LKAQTAGEHVGQILAAKLSDMEVIFEAFREFTKEKYIT--LEELLDVLCQVADQSALLKD 196 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 +++ G TG P RL+ + V + E S T Sbjct: 197 STMVLDGYTGFTPVQYRLIGILLKLCRNVFVTVSATMEPGMDLTAESDETDLFDMSRKMT 256 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 L +L + + + L + F D Sbjct: 257 GK------LKQLAEENGA--KIYQDLVFSKRPLVR--------FRNSPALDHLERTFFRY 300 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK- 403 ++ L++A + +E I + + ++ + AL+ D R Sbjct: 301 PYTRYHGGEREIMLVQAKDPADEIDFITNRIEELVKKDGYRYRDIALVCGDLPGYGREIT 360 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 I + + +S ++ S L+ + K D+ ++ ++ L Sbjct: 361 RSFEENRIPLFLDENRDVSGNPLIRLIQSALDILQKGFDYESMFRYLRTGLVTEETEAVD 420 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + + + E+ E +L Sbjct: 421 RLEIYVRAMGIRGFAKWD----------AAWEKTFEGGENLNLVEMNAFREKIMEPLRVL 470 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + P+ L + + + +D + +EE Sbjct: 471 RERCAGRGVPVAVVTDALKELLETLGAEEKLEQFSERFADSGMDREAR----EYEEIYDL 526 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + LF K + E+ +I++ +V + + +RL Sbjct: 527 VIELFEKFKSLLGDECVSRREYAEILSAGFSELSVGMIPAGADRVVCGDLKRTRLDKIKV 586 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TR 695 L G+++GV P + +K + + L TA + + + Sbjct: 587 LFFLGVSQGVVPADHSKGGLFTDNEREILKKNSMELAPTAREEGFMERFYLYLMMTKPSD 646 Query: 696 HLIYTRSL-RENNIPTIASRWLQRL----------LVLGGTDFFDNLKKRGQCYLDWTRK 744 LI + T S + + ++ G+ L W ++ Sbjct: 647 QLILSYPTVTAEGKQTRPSGIIGEMKKRFPDLFIRETEAEKRPDVSVTAAGRAILSWLQE 706 Query: 745 LDYTTKQPHYKRP----------------------------------KPFPPLEAQPRTY 770 D + K L Sbjct: 707 PDRLMDPENEKARELYSFLSSDEAKAKEMEDLAKAVAYSYKKGGIGRAAARELYGTLLRG 766 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S + ++ Y+ + L L + + D +D G LFH + + + Sbjct: 767 SVTRMEGYAGCAYSHFLNHGLGLRA--GREYELDLSDMGNLFHQSLDTFFRNVRDHGKDF 824 Query: 831 I---NHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHE--EKIQSS 877 + + ++ E+ + + +I+ + + + Sbjct: 825 RTITDAERRALVKRAVEEVSAKYRNTIMKSSARNAYLEKKVERITDRTVRALIYQIRKGD 884 Query: 878 IEKIFVNIPAKMAIE---SIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQ 930 E + I ++L G DR+D+ + V I DYK+G Sbjct: 885 FEPEAFEVDVSTRIPLKDGEAVNLRGRIDRMDVFEDEDKIYVKIMDYKSGSTSFDLALLY 944 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + QL + A S+ ++ A +FY + D + + + + +E+ Sbjct: 945 HGLQLQLVVYMDAALKLQESRHPGKQAVPAGIFYYHID-----DPVIDREDGMTDEEIEA 999 Query: 989 KSLKNLI 995 L+ L Sbjct: 1000 GILRKLR 1006 >gi|294792590|ref|ZP_06757737.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27] gi|294456489|gb|EFG24852.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27] Length = 1164 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 115/978 (11%), Positives = 240/978 (24%), Gaps = 134/978 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + L + DL L I + Sbjct: 108 LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPVDLERGAESVKNKVLQKKLRELAICMSAY 167 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L ++ A + + + I G P L+ T+ + Sbjct: 168 EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A++ +D + N H ++ D L + Sbjct: 226 AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGSSINW-- 269 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 I + + LI N EA ++A Sbjct: 270 -----------IGFDGKRGPQIVQALESNYFASPSKKNSTDATIPLIRGYNREREADAVA 318 Query: 376 IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ + ++ + R+GI I P+ +L Sbjct: 319 RRILAYVESSEEARYRDVCIMLRESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELL 378 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 T+L + + ++ L+K L LE L+ Sbjct: 379 TALFDIVRHNYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + ++ E ++ D T G L I Sbjct: 438 FHEGQDEESHVDAPRRARVNKARETIMDILSPWFDFAANAEGH--TGAEWGTQLYGLLEI 495 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + ++ ++ E+ + S +I E + ++ Sbjct: 496 LQVPERLYEWAKDAETIGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + I + + + GLN+GV+P++ + + Sbjct: 555 EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614 Query: 671 DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721 +L + + M + L + + E+ S ++RL Sbjct: 615 ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYTGSGEDGTGLEPSLVVKRLES 674 Query: 722 LG------------GTDFFDNLKKRG---------------------------------- 735 LG D + R Sbjct: 675 LGYIDQAVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734 Query: 736 ----QCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRI 790 + R + P + + S + +++ P+ YA+ Sbjct: 735 ETYRPRLAEVLRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843 LKL+ + + GT H + L K+ + + E +L + + D Sbjct: 795 LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEIL 852 Query: 844 EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890 ++ E + H ++ E +S + ++ + Sbjct: 853 QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLIEWSKRSDFDTKYLEQDFGRQGGWDPIR 912 Query: 891 IESIG---IHLTGFADRIDLL--KSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943 + + L G DRID + DYK+G + + QL A Sbjct: 913 VPLGENRYLRLIGQIDRIDEYTKNDQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972 Query: 944 LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996 L+ A + A + Y +K + + + +N IE Sbjct: 973 LESAYGKTHGGSMSPAAVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032 Query: 997 IVTLLQNGEQPFISHLRL 1014 ++T + N + S Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050 >gi|142439|gb|AAA22200.1| ATP-dependent nuclease [Bacillus subtilis] gi|2226191|emb|CAA74481.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 1166 Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 123/1040 (11%), Positives = 275/1040 (26%), Gaps = 149/1040 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + +S P +++ + L +LI Sbjct: 44 TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 +Y +L+ L I + + L + + L+ I Sbjct: 148 TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + + Sbjct: 206 YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L++ + G ++ Sbjct: 260 ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAI 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + + +++A N R E IA + + E K A++ + + Sbjct: 304 PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 + I I + + S L+ + + A+ VK L P+ + Sbjct: 364 ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + R + ++ + + + +V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583 + Q + KT + + T + + + D+ R + ++ Sbjct: 484 PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + +E + + + +I + T +F+ SR+ Sbjct: 544 VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L + + H MA + Sbjct: 604 TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740 L + + + T+ S ++RL L L + D Sbjct: 664 RLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723 Query: 741 ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763 WTR+ D + L Sbjct: 724 SFTASQLRLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 784 YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841 Query: 824 INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870 ++ + ++++ ++ L + + KI + Sbjct: 842 RDEKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901 Query: 871 EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917 E S I + + K + + L G DR+D +S + I D Sbjct: 902 EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+ + Q+ ++ + A + Y + D + Sbjct: 962 YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016 Query: 976 NDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036 >gi|282849709|ref|ZP_06259093.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC 17745] gi|282580646|gb|EFB86045.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC 17745] Length = 1164 Score = 209 bits (532), Expect = 2e-51, Method: Composition-based stats. Identities = 112/978 (11%), Positives = 242/978 (24%), Gaps = 134/978 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + L + DL L I + Sbjct: 108 LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPADLERGAETVKNNVLQKKLRELAICMSAY 167 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L ++ A + + + I G P L+ T+ + Sbjct: 168 EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A++ +D + N H ++ D L + Sbjct: 226 AVIT--IDLPMAPKALNLAHR------------GEHLFSRPLEIYDTLVARYGSSINW-- 269 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + + LI N EA ++A Sbjct: 270 -----------VGFDGKRGPQIVQELEANYFASPSKKNTTDATIPLIRGYNREREADAVA 318 Query: 376 IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ + ++ + R+GI I P+ +L Sbjct: 319 RRILAYIESSKEARYRDVCIMLRESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELL 378 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 ++L + + ++ L+K L LE L+ Sbjct: 379 SALFDIVRHNYSRDSMFLLLKTDLMPLSREAVDELENYV-LEFGIDHYKWERESWPYLRG 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + ++ + ++ D T G L I Sbjct: 438 FHEGQDEESHVDAPRRARVNKARQTIMDILSPWFDFAANAEGH--TGAEWGTQLYGLLEI 495 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + ++ ++ E+ + S +I E + ++ Sbjct: 496 LQVPERLYEWAKDAETIGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + I + + + GLN+GV+P++ + + Sbjct: 555 EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614 Query: 671 DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721 +L + + M + L + + E+ S +RL Sbjct: 615 ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVAKRLES 674 Query: 722 LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745 LG D + R + + W R+ Sbjct: 675 LGYIDQVVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734 Query: 746 DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790 + + + + S + +++ P+ YA+ Sbjct: 735 ETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843 LKL+ + + GT H + L K+ + + E +L + + D Sbjct: 795 LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEIL 852 Query: 844 EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890 ++ E + H ++ E +S + ++ + Sbjct: 853 QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912 Query: 891 IESIG---IHLTGFADRIDL--LKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943 + + L G DRID + DYK+G + + QL A Sbjct: 913 VSLGEDRYLRLIGQIDRIDEYTRDDQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972 Query: 944 LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996 L+ A + A + Y +K + + + +N IE Sbjct: 973 LESAYGKTHGGSMSPAAVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032 Query: 997 IVTLLQNGEQPFISHLRL 1014 ++T + N + S Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050 >gi|221308900|ref|ZP_03590747.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. 168] gi|221313224|ref|ZP_03595029.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318147|ref|ZP_03599441.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322422|ref|ZP_03603716.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. SMY] gi|255767242|ref|NP_388943.2| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|239938591|sp|P23477|ADDB_BACSU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|225184869|emb|CAB12902.2| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis subsp. subtilis str. 168] Length = 1166 Score = 209 bits (532), Expect = 2e-51, Method: Composition-based stats. Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + +S P +++ + L +LI Sbjct: 44 TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 +Y +L+ L I + + L + + L+ I Sbjct: 148 TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + + Sbjct: 206 YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L++ + G ++ Sbjct: 260 ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAI 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + + +++A N R E IA + + E K A++ + + Sbjct: 304 PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 + I I + + S L+ + + A+ VK L P+ + Sbjct: 364 ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + R + ++ + + + +V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583 + Q + KT + + T + + + D+ R + ++ Sbjct: 484 PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + +E + + + +I + T +F+ SR+ Sbjct: 544 VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L + + H MA + Sbjct: 604 TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740 L + + + T+ S ++RL L L + D Sbjct: 664 RLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723 Query: 741 ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763 WTR+ D + L Sbjct: 724 SFTASQLRLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 784 YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841 Query: 824 INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870 + + ++++ ++ L + + KI + Sbjct: 842 REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901 Query: 871 EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917 E S I + + K + + L G DR+D +S + I D Sbjct: 902 EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+ + Q+ ++ + A + Y + D + Sbjct: 962 YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016 Query: 976 NDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036 >gi|332300661|ref|YP_004442582.1| hypothetical protein Poras_1481 [Porphyromonas asaccharolytica DSM 20707] gi|332177724|gb|AEE13414.1| hypothetical protein Poras_1481 [Porphyromonas asaccharolytica DSM 20707] Length = 996 Score = 209 bits (532), Expect = 2e-51, Method: Composition-based stats. Identities = 159/1084 (14%), Positives = 324/1084 (29%), Gaps = 177/1084 (16%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 + L + R N L + VPTKRA L+ E + +TILP I ++ + + Sbjct: 5 DNFLSQVVRRLRSNGTPLREQLLVVPTKRAGTFLQRELVAQLVDAATILPRIVTIDEWIT 64 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD---IIKDLYPESPLSLPISPA 143 E +L + L + L + + + + + S + Sbjct: 65 EMSGRVILDNTAL---------ISILYEVYAAYLAEQGEEKAATDQMLRLSQTERMLRDF 115 Query: 144 NAIWLAKN----LADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLAAD 186 + LA L ++ ++ + + L + E +W Sbjct: 116 QDMDLALANVEMLLGNLEELDAFD-DYSFLTEEECEAIRKFWTTLPKDFFKKPQGEEYLH 174 Query: 187 F---LKIASKYWTERLVELNASSPVGYQIALMRA---------EAEHLMKGTKGPIIIAG 234 F + K + RL EL + + E + G Sbjct: 175 FSVVWREIYKRFNTRLTELGVAYRAAAYRLVAERDFTDDDLLKELRRHSGSKISLVSFIG 234 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 PA +++ + A+ L W ++ +T+ + H Sbjct: 235 LYNLTPAEQKIIKKLQIASAEALNL--------QLYWQKVSLDATDEFT------DHLYR 280 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 ++ + ++ L + D S +++ S+ + S + + K P Sbjct: 281 TIEQNVELLGGEIIDGGVARVYSPKIHLLSLNSTILQPQVVNSLIDKIIEHDPKAP---- 336 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 E + IAI L + LI ++L + L + Sbjct: 337 ---------------EELRIAIVL-------NDEKTLIPLMKSLKQPTCTSL-------N 367 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 ++ G PL T ++ + LN + PL E + + + Sbjct: 368 VTMGYPLQYTSVATWIRRYLNIFG-----------LVSPL----DRELARVKLTCSRLQL 412 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 L +L + ++D+IA + + E + +L+ +TP Sbjct: 413 WLAAPLTRKLFGELTTTLMDQIALHHYAITASELRKIIEELTNGADEAVRQPLLEILTPS 472 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-- 592 T K + +L +E + + Sbjct: 473 FTGKELLGR------VGQLLELLKGTSSVPEEEEDEPADEPIDQVILSEALDQIILYVTQ 526 Query: 593 --------ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 E+ + ++ +L+ ++ + L +G LE+R L FD + Sbjct: 527 VSNLLQPNESDRHLLDTPSHVAYLLEQLLAVGSIPFEGAPLEGLQEMGFLETRTLTFDYV 586 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSL 703 I+ + EG PK++ + +++ ++ T A+ F G + + + Sbjct: 587 IMLNVQEGDLPKSSHTTTLIPDLLRRAAHMTTYRTEDDTNAYHFYRLIQGAKEVYLLQDT 646 Query: 704 RENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP- 761 R + SR++ ++ L NL+ + Y D D T Q K + Sbjct: 647 RPKSISSMEPSRYVDQIRYL------TNLQLQEAAYADPLEARDETVSQITGKDEEVRDY 700 Query: 762 --PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 L + RT+S S++ PY Y ++I + + + G++ H + + Sbjct: 701 LEQLTSGERTFSPSDLITYYKCPYQFYLKKIKGVGEPRPEPGVVTQIELGSIVHEYLEQF 760 Query: 820 IKKRINKNTPEI----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 K + K I + I ++ P I + LE Sbjct: 761 YKGLVQKAGDVITRDQLEHKVSRQTLTDIYKEIVSDKSAPDD---ILLTDLERYISKALE 817 Query: 870 HEEKIQSS---IEKIFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 + + S ++ + K + I++TG DR+D + G I DYKTG Sbjct: 818 IDRLLLGSSGTLQLLASETKIKNVPFQWGTHTIYMTGQPDRVDKVSGGICRIVDYKTGSI 877 Query: 924 PKKETAQK-------------------LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 + + +K Q L A I+ + Y Sbjct: 878 KQPKKLKKLSFDTLTSWRFQKNNYKLGGYMLQSYLYALLYAQQPEVGIEELQPT--LYSL 935 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + + + + E K L +V + E+ F + + +Y Sbjct: 936 APAVPASEGAIYLDEPKDLNAIKEIVFKYLDLLV----DPEKKFF--QTPVQDICKECDY 989 Query: 1025 DHLA 1028 + Sbjct: 990 KTIC 993 >gi|294674329|ref|YP_003574945.1| hypothetical protein PRU_1650 [Prevotella ruminicola 23] gi|294472070|gb|ADE81459.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 879 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 80/556 (14%), Positives = 176/556 (31%), Gaps = 60/556 (10%) Query: 520 AVLLVDHI-LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A ++ I L+ + W + + Sbjct: 337 ARRWIESIKRHPYATLMPDDFASQRYTDIQPLLHWLISLTQTIATSKSPIIDSPLDTESL 396 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 TL + S +++ +K + I ++ +LI ++ E + + ++G LE+R Sbjct: 397 FRMYTLLNRLSGLVD-SGVLKVDVITLQRLVVQLISTTSIPFHGEPAEGIQVMGVLETRN 455 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHL 697 L+FD ++L NEG P+ F+ ++ L T + + H F + + Sbjct: 456 LDFDHVLLLSCNEGNMPRGVNDTSFIPYALRKAYGLTTIDYKVSIYEHYFHRLLQRAKDV 515 Query: 698 IYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-CYLDWTRKLDYTTKQPHYK 755 + + SR++ +L+V K GQ L + ++ T + Sbjct: 516 TILYNNATSDGKTAEMSRFMLQLMVENKIPITFQTLKAGQTPQLHAPQAINKTPEV---- 571 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-DRTDRGTLFHN 814 + S + I + + R + +L + D D G +FH Sbjct: 572 MSQLQRRFAKDAGGISPTAINTYLRCQLRFFYRYVCELKEPDSTEDDLIDNRLFGNIFHK 631 Query: 815 IITELIK----------KRINKNTPEINHLMKQIIDSHFEKENLP-----------PHID 853 + + + + +++++D ++E + Sbjct: 632 AAQLVYEYLVATKATITTMAIDDLLKEEVTIERVVDEAIKQEFFHINDASRPLPPLDGLQ 691 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--- 910 +I R + K LE + + + + P + + + ++ G DR+D + Sbjct: 692 LINREVIIKYLRQLLECDR-RLAPFSILGLEKPVNITLNNQ--YIAGVIDRLDSITDPET 748 Query: 911 --GFVDITDYKTGDNP-----------KKETAQKLID--PQLSLEAAALKAGSFSQIDCR 955 + + DYKTG +E + D Q L A ++ S+ Sbjct: 749 GLERIRVVDYKTGSRQMKAMPDVAAIFSQEAIKDHSDYFLQTLLYAHIVR----SKTPQM 804 Query: 956 KVANLFYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 L +I+ D + + S++ + L + + + N + F+ Sbjct: 805 VSPCLLFIQHAGSEDYDPTLKIGKEAITDIADYSDEFITLLRQQLDDIYNAQIAFV--PT 862 Query: 1014 LSEKSNIQSEYDHLAR 1029 + Y L R Sbjct: 863 DDQHRCETCPYAALCR 878 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 60/460 (13%), Positives = 116/460 (25%), Gaps = 106/460 (23%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + LL+ L+ V + P KRA L +K P Sbjct: 4 FLEHVAEDLLSRYGTN-----------LSRVAVVFPNKRASLFLNEHLAR-LAQKPLWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 ++ D+ + L V + R+ I ++ D Sbjct: 52 AYITISDLFRSHSKLQVADPILL---VCELHRVFTACTGI----DETLDHFYGWGQLLLS 104 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 N K LA++ D+H L + Y ++ ++++ Sbjct: 105 DFDDLDKNMAPADKVLANL-----------RDIHELDDTSYLTPEQR-----EMIKRFFS 148 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + L A + ++ GA Sbjct: 149 NFSEE--------HNTELKERFLRLWSH----------IGEIYHAYNQQLAEKQLAYEGA 190 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + + Q L L+ + + + Sbjct: 191 LYRQVATDETLE----------FEYDTYVFIGFNLLQKVEQTLFSRLEKQGKAIFYQDTD 240 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + LI A E +A I+ Sbjct: 241 EVPPH------------------------------------HINLISAPTENIQARYISE 264 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L + +K+A++ + L + V L I+I+ G PL T +S++ +L+N Sbjct: 265 WLDADRINDGRKTAIVLCNEGLLQTVIHCLPENVDKINITTGYPLGQTSIASLINTLINM 324 Query: 437 IFKLNDFMA-------IATLVKHPLAKFGFPEKYLSRAKN 469 I ++ +HP A + R + Sbjct: 325 QVHGYSLRKQTFARRWIESIKRHPYATLMPDDFASQRYTD 364 >gi|182436135|ref|YP_001823854.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464651|dbj|BAG19171.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1184 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 134/1096 (12%), Positives = 263/1096 (23%), Gaps = 154/1096 (14%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A V + +++A ELR G + P + Sbjct: 65 TLVESVAARVNRGADPARVLVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSFCYAL 122 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ + L S Sbjct: 123 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEK---AGLAHVRWPDELRSCLTTR 179 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 180 GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAEL 239 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------- 255 + R E + G+ + + + PA RL+ +A + Sbjct: 240 VHRAVLLAERPEVAERLAGSYDAVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEE 299 Query: 256 ----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-----------LL 300 G A T Y+ Sbjct: 300 GRGDGGRGDGGRGEEARAGGARSEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAF 359 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D V L G + + + ++ P + V Sbjct: 360 RRADGDPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDGGRVE 419 Query: 361 LIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDIS 416 E +IA LR + E+ + + L+ A V+ LT G+ +++ Sbjct: 420 TYTYPTASTELENIADLLRRAHLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVD 479 Query: 417 AGI-PLSTTLHSSILTSLLNAIFKLNDFMAI-------------ATLVKHPLAKFGFPEK 462 PL + L + L + + P G + Sbjct: 480 GDDLPLRHEPAVAPLLTALRTVATAALRGLLDGDRDETDGAGRDEADGADPGETAGADQG 539 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDR--------------------------- 495 + A A R + +D ++ + Sbjct: 540 DTAGADPGETAGAGRAGARTSSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEERAAG 599 Query: 496 -------IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 P A L + + L T + + Sbjct: 600 IRVPAPSDELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALW 659 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + + W +L ++ E + + ++ Sbjct: 660 NGTPWPGRLERAALRGGAGGRNADRDLDAVCALFETAA----RAEERTGGRGALNFLEEV 715 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + I +T+ + + + ++ S+ L + +++ G+ EG+WP + L Sbjct: 716 DAQDIAADTLSRRTARPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADR 775 Query: 669 QSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 L A L+ T + SR+L L V Sbjct: 776 IGRDGLAEPLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGV-- 833 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY----------------------------- 754 +R +L TT P Sbjct: 834 EPRDVTGRPRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPA 893 Query: 755 ------------KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKK 801 R QP T S S + QL N + R + Sbjct: 894 AHPYRWWGLEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGR-----EVKADAP 948 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G + H ++ + + ++ + + + + Sbjct: 949 ATAAQGFGNVVH-VLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR-- 1005 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYK 919 FL + + +E+ + + G DR++ G + D+K Sbjct: 1006 AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFK 1065 Query: 920 TGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCIT 975 TG P K+ PQL++ A++ G+ ++ + ++L+Q Sbjct: 1066 TGKGAPTKDEVATH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQPAPKKEGG 1123 Query: 976 NDKKKYSADELSEKSL 991 + K A E Sbjct: 1124 DAFPKVQAQEPLAGEW 1139 >gi|291483546|dbj|BAI84621.1| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp. natto BEST195] Length = 1166 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + +S P +++ + L +LI Sbjct: 44 TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 +Y +L+ L I + + L + + L+ I Sbjct: 148 TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + + Sbjct: 206 YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L++ + G ++ Sbjct: 260 ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAV 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + + +++A N R E IA + + E K A++ + + Sbjct: 304 PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 + I I + + S L+ + + A+ VK L P+ + Sbjct: 364 ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + R + ++ + + + +V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583 + Q + KT + + T + + + D+ R + ++ Sbjct: 484 PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + +E + + + +I + T +F+ SR+ Sbjct: 544 VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L + + H MA + Sbjct: 604 TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740 L + + + T+ S ++RL L L + D Sbjct: 664 RLYVSYPIADAEGKTLLPSMIVKRLGELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723 Query: 741 ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763 WTR+ D + L Sbjct: 724 SFTASQLRLWTREYDISDVWWSTYNVLMSAPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 784 YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841 Query: 824 INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870 + + ++++ ++ L + + KI + Sbjct: 842 REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901 Query: 871 EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917 E S I + + K + + L G DR+D +S + I D Sbjct: 902 EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+ + Q+ ++ + A + Y + D + Sbjct: 962 YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016 Query: 976 NDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036 >gi|300704440|ref|YP_003746043.1| helicase, c_term recb family exonuclease [Ralstonia solanacearum CFBP2957] gi|299072104|emb|CBJ43436.1| putative helicase, C_term RecB family exonuclease [Ralstonia solanacearum CFBP2957] Length = 963 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 156/954 (16%), Positives = 286/954 (29%), Gaps = 106/954 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +D + + VPT I +R Sbjct: 5 AFAPGPAFLSHAADA-------AWRFFDAHAAQAPGTGVVVVPTAAQIPGVRGALHASAQ 57 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125 G +LP I +LG + DL L S + RLL + + + W + Sbjct: 58 AGGVPRLLPRILTLG-----HWLLDLPPEPGLPAARSPLSRLLAVQQALKTQAWLREALG 112 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 D + ++ ++ + D D ET+ + AL + L+ Sbjct: 113 AQDDAALWGVAQVLVTVSDELSQRWLTLDAADS-ETDGRHDALEAALSAALERTYAQLSE 171 Query: 186 DFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 FL +I +W AS P+ ++ MR + L GP++ T A Sbjct: 172 RFLGTESRIVLTFWRLL---SGASDPIPVRLRAMRRLIDALR----GPLVWMSPTDPEGA 224 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + A Sbjct: 225 DFDFLMRAAGRVPV---------------------------------------------- 238 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L I + R L + + ++ + + Sbjct: 239 -LRIGYDWQAREPAPEAAAPATHAAFRNLLLHAWSECGTAAQLAPEASAEAERPPPALRI 297 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A +EA A L L+ ++ AL+ DR +ARRV+ L R + + G L Sbjct: 298 AGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKL 357 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 STT ++ L L+ + D A+ L+K P EL +N Sbjct: 358 STTRAAAALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPDWVAELERRVRRRN 417 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 R + +T + + + LA L + + L+ + Sbjct: 418 VSGGWG-----RLRRLVAQRDTDAEGADASDATDAGPLAGRLAERL-----GLLADEAAL 467 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 G+ ++ W L L + + + + + S + + + Sbjct: 468 WRRAGHATLEAWVTLLAGTLDRLRMRAGLQSDDAGRQLLDWLDRLRVSVHGGADAGARFS 527 Query: 602 AIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 EW +++ L++ + + IL +R+ FD +++ G ++ P + Sbjct: 528 LQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPE 587 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQR 718 F S ++ +L L + Q A D + ++ T P S WL+R Sbjct: 588 WLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLER 647 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L ++ L + T P P T S + L Sbjct: 648 LQRRL---AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPATLSAAAYNSL 698 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLM 835 PY + R+L+L + + ++ D G L H I+ ++ ++ + + L+ Sbjct: 699 RRCPYQFFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALL 758 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAI--- 891 + + D F + + + + S+L + ++ + A +I Sbjct: 759 QSLTDERFGSLLAEDGHALRFYRRWQNVMPSYLAWQAAREAQGWRFEAGEVDADTSIALP 818 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLEAAA 943 + L G DRID V + DYKT K D QL Sbjct: 819 GGQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFYGLL 872 >gi|239625644|ref|ZP_04668675.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519874|gb|EEQ59740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1176 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 121/984 (12%), Positives = 262/984 (26%), Gaps = 166/984 (16%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L I + + L + E + L++ + + + E + Sbjct: 91 GFINQLKSQISELYQYGITPDMLRDVMREAGSPLLKQKLEDLELIYSGFRQYIEEHYIT- 149 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ E I++ G TG P RL+ H + +D Sbjct: 150 -AEEILDILCRELPKWEVLKDSVILLDGFTGFTPVQYRLVELFLLHARKVLCSVTIDPRA 208 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 Q+ + + R D + + Sbjct: 209 NAY------------------QEGSIQHLFY--MGKHTVCRLDYMARHHGIAKEPDVICS 248 Query: 327 ISKSFLPPDTSDMRNTDIL--ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 ++ ++ D+ + + V + ++ EA + + + E Sbjct: 249 RRPAWRFLESPDLDFLEQNLYRYYGNVWDRPADHVVIYKSRGPAGEAAYVCSRIEQMVQE 308 Query: 385 NK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + +A+IT D R GI + + ++ + L I + Sbjct: 309 EGLRYRDAAVITGDLASYGRELAHQFDEAGIPYFLDDKKSIMENPLVELIRAALETI-RD 367 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE---------------LVALRGNKNSYDI 485 + ++ +K L + + A + E Sbjct: 368 FSYESVFRYLKTGLVYDRAEDGDVPGAGDVSEAGDVLDFGNLTSLGNAGQPEEAVEFDGS 427 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE----------LAVLLVDHILQCITPLV 535 + L+ DR+ + W+ S+ +K IL+ + PL Sbjct: 428 REHAGLMTDRLENYVRALGIRGWKRWESQWEKPCRGGEKLNLKELNAYRQWILKPLRPLR 487 Query: 536 TYKTNKNSTCGN--LSISDWTKLTV---------TCLQNVCLDEHRKLPNLWFEEEGKTL 584 + +T G+ ++ ++ + + L + + + L Sbjct: 488 EAFKEEGATIGSVTAALREYLERMGLRGKLEDYSEFFRGRGNPGDENLVREYSQVYDRVL 547 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 LF ++ K + + I+ V + + SRL + L Sbjct: 548 E-LFERLEGLLGAEKTDMKNYPQILDAGFGEIKVGVIPATIDQVMVGDITRSRLEDVKVL 606 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRH 696 G+NEG P+ + L+ ++ TA + + +R Sbjct: 607 FFVGVNEGTVPQRKSGASLLTDRDRAVFKEFNMELAPTAREDGCIQKFYLYLMMAKPSRR 666 Query: 697 LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKL 745 L+ T + S + + L + + D RKL Sbjct: 667 LVLTYAGMSSEGKSQRPSSLIGEVEKLFPGIAVQDEESVDWPVRTVRDGREMLIDGLRKL 726 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTY----------------------------------- 770 + H K P+ E Sbjct: 727 REEKEGEHAKAPEGRDAEENAFMELYRYFYCSDEHREKVRQLVDAAFYSYEERGIGRAAA 786 Query: 771 ----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 S + ++Q + YA + + L+L + + + D G LFH I Sbjct: 787 RALYGQSLQGSVTRLEQFASCAYAHFLKYGLELMERQ--EYELEAVDMGNLFHQSIDRCF 844 Query: 821 KKRINKNTPEI-----------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--F 867 + + ++ + + + +I+ + Sbjct: 845 AVMKERGQDWRGLTEEGRKQLVKECVARVTEEYGNTIMASSARNAYLAGRVERITDRTIW 904 Query: 868 LEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLKSGFVD--- 914 E+ + E + M I E + L G DR+DL + Sbjct: 905 ALAEQVKKGDFEPTGFEVSFSAIDNLKAMRISLSEDEELQLRGRIDRLDLCEDEQHVYVK 964 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI 971 I DYK+G + QL + A ++V A +FY + Sbjct: 965 IIDYKSGTTSFDLAALYYGLQLQLVVYMDAAVEMEERNHPDKEVVPAGIFYYHIN----- 1019 Query: 972 DCITNDKKKYSADELSEKSLKNLI 995 D + + ++ + +E+ ++ L+ L Sbjct: 1020 DPLADKQEGMTVEEIEKQILRQLR 1043 >gi|15892473|ref|NP_360187.1| hypothetical protein RC0550 [Rickettsia conorii str. Malish 7] gi|81528292|sp|Q92I70|Y550_RICCN RecName: Full=Uncharacterized protein RC0550 gi|15619629|gb|AAL03088.1| unknown [Rickettsia conorii str. Malish 7] Length = 838 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 132/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 350 --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E + F + + ++ + + + Sbjct: 448 FNNENWTLSAKAHPWLSKQALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIKNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F++ + + + Y+++ + + + Sbjct: 738 MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 TLSIETLNRHKAGLVKLLEHYITNQF-FSYDLNLSK----YNDYLHLSR 838 Score = 68.4 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ + V I +P + EL+ + K LP Sbjct: 7 FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 52 IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP++ ++ A+ L + + + + ++ +W FL+ W Sbjct: 88 -LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y++ L++ E + G +I+AG Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|212640055|ref|YP_002316575.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1] gi|212561535|gb|ACJ34590.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1] Length = 1167 Score = 209 bits (531), Expect = 3e-51, Method: Composition-based stats. Identities = 129/1005 (12%), Positives = 272/1005 (27%), Gaps = 146/1005 (14%) Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LLAAD 186 L+L A+ + L ++ + L E+ Sbjct: 117 EQLTLFRKAADKRGFIEQLEQMLTEYKRYCVTPATLKQ-TEEQLRRHATANETVLADKLK 175 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 + + + +++ + L+ + H + I + G P ++ Sbjct: 176 DTAMIFEQFEQQMAHHYVD--SEDYLRLLAEKIRHSSYMKRARIYMDGFYEFTPQEYMVI 233 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + H V LD + ++ T+ T+ Q L + + I+ Sbjct: 234 EQLFIHCPHVTVALTLDAPY--------EQLPDDLHVFRNTWRTYAQLRDIALQNGVPIE 285 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + + R R + P +K + + EA Sbjct: 286 KVEQLRHNVRHKHEELRHLEAHYDDRPVC---------------KWEKQTEAIIIGEATT 330 Query: 367 EREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLS 422 R E IA + + + + AL+ + R V + I I P+ Sbjct: 331 RRAEIEGIAREIIRLVRDEGYRYRDIALLIRNVGDYRNVLKTVFADYRIPYFIDEKEPML 390 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKN 481 L + + A+ + A+ VK + R + LE L Sbjct: 391 DHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVHDMRMAMDQLENYVLAFGIQ 450 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKT 539 + + + + + + E ++L + + + + + T + Sbjct: 451 GDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLVISPLLVLQKRLKQAKTGRE 510 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + E+ + L + +E Sbjct: 511 QCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARH-HEQVWQAFIDLLDQYVEILGDET 569 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + ++ II + + + I SRL N L G+NEGV P Sbjct: 570 LSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNIRCTFLVGVNEGVIPMRKN 629 Query: 660 KNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT- 710 + LS + L + E+ + + + + L T +L T Sbjct: 630 DDGMLSETDRELLYHYSLHVAPASRERMLDEPFLLYLALVSSSERLYVTYALSNEQEKTL 689 Query: 711 IASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--KRPKP 759 + S +++RL + G F L+++ + L +Q ++ Sbjct: 690 LPSMFIKRLTDMFPNVTKMQWGTDPFLLPLQQQLAYVTNDVATLGPLVQQLEAWKRQYAI 749 Query: 760 FPPLEAQPRT-----------------------------------------YSFSEIKQL 778 P S S ++ Sbjct: 750 EPMWWDVYNAYVQHEQWKERIAVVVRALFYENRAKRLNKQLAKELYGKKVKASISRMETF 809 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN------ 832 P+A +A LKL F+ D G LFH + + + + P Sbjct: 810 NRCPFAHFAAHGLKLKERTVFQ--LKAPDMGQLFHQALKVIADRLRQEQLPWSQLSKQQC 867 Query: 833 -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885 ++QI ++ L H + I + + E +S I V + Sbjct: 868 EQLSYEAVEQIAPYIQQEVLLSTHRYRYMKKKLQTIMTKATTVLSEHAKRSGFVPIGVEL 927 Query: 886 PAKM--AIESIGIHLT--------GFADRIDL--LKSGF-VDITDYKT-GDNPKKETAQK 931 + + L+ G DR+D + G + + DYK+ Sbjct: 928 GFGDGEPLPPLTFTLSDGTVLQFVGRIDRVDQAMSEQGVLLRVIDYKSKQKTLDLTEVYY 987 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + + A + Y + + + + EL +K Sbjct: 988 GLALQMLAYLDIVLEYAEKLVGTSAFPAGVLYFPI-----HNPMMKVNEWLDEHELEKKF 1042 Query: 991 LKNL---------IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 L+ + V L+ +P S L + + N + Sbjct: 1043 LEQFKMGGYVLADEKTVRLMDEHVEPGTSSLIIPVRLNKNGTFAQ 1087 >gi|192361853|ref|YP_001982656.1| hypothetical protein CJA_2193 [Cellvibrio japonicus Ueda107] gi|190688018|gb|ACE85696.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107] Length = 972 Score = 209 bits (530), Expect = 3e-51, Method: Composition-based stats. Identities = 99/760 (13%), Positives = 215/760 (28%), Gaps = 61/760 (8%) Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 E + S N L K + E L + + +I+ + Sbjct: 210 GEFHARLASLNLVTQEQAMARLLKAYQQGVLSPEPAIWLLGFDDIPPLQQQLIATASHTY 269 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 D ++ ++ A + + + + + A + Sbjct: 270 QLIPGARVDKARLARTQCITSEQEMLAAARWSQAILAENAQAMIGIIVPNLGQCRAQLER 329 Query: 395 DRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 L RF + + SAGIPL +T + LL I L+ Sbjct: 330 AFTSVFEPLSVLPEHMRFTLPFNFSAGIPLGSTPLVAASLELLGLYQNHWPMEDICQLLL 389 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P E L L + DL+ + Sbjct: 390 SPFWGHADAELVLRS---QLVNQLRELGRFHISGSDLRYWAQKL------------ATPK 434 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 E A L + + L+ + + + G S W++L LQ++ R+ Sbjct: 435 AGGNTAETANRLAE--ETFLNYLLHLEAQRRDSFGKHPASYWSELFNRLLQHLDWPGERR 492 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 L + ++ + L ++ + E + + ++ + + S + IL Sbjct: 493 LDSQEHQQLAQWNQLLEDFAQLDACGLQLSYGEALQHLRQIAAKTPFQAQTPLSP-IQIL 551 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---HDF 688 G LE L F + GL+ WP + NP L +Q + A Sbjct: 552 GALEGSGLVFSHCWVMGLHHRQWPAAASPNPLLPINLQRQQQMPHASAERELVFARSLTQ 611 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 ++++ + ++ S ++ + + + Y + Sbjct: 612 HYRQCAGQVVFSCASSLDDQELSPSALIRDIPLTPLEQLVPDANSLLADYWQQLLQSRQL 671 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P + + S K+ P+ +AR L +R Sbjct: 672 EAIEDNTGPAV---GKDENIRGGASIFKEQAACPFNAFARLRLGARIPEAPVTGFSAIER 728 Query: 809 GTLFHNIITELIKKRINKNTPEINHL--MKQIIDSHFEKENLPPHIDI----------IW 856 G + HN + +L + ++ + +++ + + + + Sbjct: 729 GNMLHNALADLWRWLRDQASLLALDEESLQKQLHTFVNTAVMDTARLRGSSVSAFYTQLE 788 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDI 915 + + +L+ E + + + + P ++ I + L DRID L ++ + + Sbjct: 789 QERLQALLREWLQRERER-PAFTVVAIEHPIEVTYAGIPLRL--RIDRIDQLIETNELLL 845 Query: 916 TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL--------K 966 DYKTG ++ +PQL L A + + + + ++ Sbjct: 846 IDYKTGHPSINSWFGERPDEPQLPLYAL---------VCPPQPGAIAFAQINAHGCEWKG 896 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 K + ++L + G Sbjct: 897 TGQLDINHPGIKPAGDWAQQLSDWQQHLSRLAESFLAGTA 936 >gi|157964483|ref|YP_001499307.1| endonuclease [Rickettsia massiliae MTU5] gi|157844259|gb|ABV84760.1| RecB family exonuclease [Rickettsia massiliae MTU5] Length = 846 Score = 209 bits (530), Expect = 3e-51, Method: Composition-based stats. Identities = 133/709 (18%), Positives = 260/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE IA ++ A++T + L R L ++ Sbjct: 212 PASKQISDGISYYEPNDIYEETKQIAYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 268 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 269 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 316 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 317 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 357 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 358 --------------TDTPHNIQAILTLTKEITKKLL-------PTIWEKEGGAELLEFLT 396 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 397 NLTAYSKYINSTDKKDFPKIFSFLLSNIK-HYKNTNTTSIIIGRPEDLALCEFDLIILPH 455 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E + F + + ++ + + + Sbjct: 456 FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 515 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 516 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 565 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 566 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 625 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 626 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 685 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 686 TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 745 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F++ + + + Y+++ + + Sbjct: 746 MLLENGFTKCNSLSLLCHPQPLLCYSRESGNPVMNNNITIAYVKITS---TEPYVQTTEI 802 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 803 ALSIETLNRHKAGLVKLLEHYIT-NKCFSYDLNLSK----YNDYLHLSR 846 Score = 66.1 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ V I +P + EL+ + K LP Sbjct: 15 FLKSFAEYIIDKLGKG------------TEVQIILPNNFSCLELKKILTDKYKIK---LP 59 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 60 IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 95 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP + ++ A+ L + + + + ++ +W FL+ W Sbjct: 96 -LPFNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 151 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y+ L++ E +K +I+AG Sbjct: 152 EEISCTQKQTKAVYKFKLLQ-EKIIKIKKGHKQVILAGI 189 >gi|295109448|emb|CBL23401.1| ATP-dependent nuclease subunit B [Ruminococcus obeum A2-162] Length = 1112 Score = 209 bits (530), Expect = 3e-51, Method: Composition-based stats. Identities = 106/924 (11%), Positives = 242/924 (26%), Gaps = 133/924 (14%) Query: 150 KNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + +I E E++ + + + + + + + + E L + +S Sbjct: 120 DEVKSLISEFMQYEVHEEEMDKMINDAEGKPLLQMKLKDVSVLYQAFREYLSDHFMTSEE 179 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ E K +I+ G TG P ++ + V +D Sbjct: 180 VL--EVLAKEIPFSQKLRGSTVILDGYTGFTPVQHTVIRELLAVCKKVSVTVTMDV---- 233 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 E Y +H K+L L E S Sbjct: 234 -----REELPAKGKPHELFYMSH------KMLRSL-------SEFTKDMEEPVWIKSGSS 275 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---- 384 F ++ + + K +V + +A E A + + + Sbjct: 276 SRFADSPALGFLEQNLFRYRRRSYDKEQKEVQIFQAGTPEREMQETARRIIRLVRDSQYR 335 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + + + + GI I + + + L + + + Sbjct: 336 YGQIAVITGNLEEYGSIARHVFEEAGIPFFIDEKHSILMNPFVEYVRAALEMVSQGFSYE 395 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ ++ + LE L + + D + L R ++ Sbjct: 396 SVFRYLRCGMSDIS------RSETDRLENYVLALGIHGFRKWDEGWVRLSRDMDPESIME 449 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + + R E + LA + ++ L Sbjct: 450 LNNIRERFVTEVRSLAEGFAGKKKTVAEYSRCLYEFIVQSRVQEKLAVQELLFKQHGDRA 509 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + + + +L K++ K +A E+ ++ + V Sbjct: 510 --------MEKEYAQIYGIVMNLLDKMVSILGEEKVSAEEYRQLLETGMGQAKVALIPPG 561 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAE 678 + + +RL + L G+NEG PKNT L+ + + L + Sbjct: 562 IDQVLVGDMERTRLKDIRALFFAGVNEGCIPKNTESGGILTEMDRDFLGGQGIELAPGPK 621 Query: 679 KYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + + + + L + S+ +L R + + Q Sbjct: 622 ELMNMQRFYLYLNFTKPSERLCLSYSMSNGKGEATGPAFLIRTVQTLFPKLKTERAEEPQ 681 Query: 737 CYLDWTRKLDYTTKQ--------------------------PHYKRPKPFPPLEAQPRT- 769 L+ + + R +EA Sbjct: 682 NELELIETPNTAVEYFLSGLTDEEKRKDNLIFAELYSWYLNSPIYRTATKKLIEAAFIRK 741 Query: 770 -------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 S + +++ +A + + L++ + + D G Sbjct: 742 PVDQISKSVAKALYGEVSPNSATRLERFSACAFAHFLKYGLEVKER--AEYEFKAMDMGN 799 Query: 811 LFHNIITELIKKRINKNTPE---INHLMKQIIDSHFEKENLP--------PHIDIIWRHL 859 + H + + + + + + I D ++ + + Sbjct: 800 VIHQALEDFAAELHRRKLDWSVLSDEMRDAIADECLDRISADYGNTILQSSARNRYMIER 859 Query: 860 FHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD- 914 +I + E+ + + I G DR+D+ Sbjct: 860 TRRILRRTVWALQEQLRNGKFQPEGFEVS----IGG------GRIDRLDIMKTDDKVYVK 909 Query: 915 ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI 971 I DYKTG + + QL + A + +V A +FY +K Sbjct: 910 IIDYKTGNTTFDLVSIYYGLQMQLVVYMDAAVKAEQRKYPDAEVKPAGIFYYNVK----- 964 Query: 972 DCITNDKKKYSADELSEKSLKNLI 995 D + + + D L + K L Sbjct: 965 DPMLQKEMEDDLDGLDPEIFKKLK 988 >gi|225020701|ref|ZP_03709893.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii ATCC 33806] gi|224946647|gb|EEG27856.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii ATCC 33806] Length = 1079 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 125/1050 (11%), Positives = 288/1050 (27%), Gaps = 146/1050 (13%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLG 82 + L++ + I +K+A LR + KS +++S+ Sbjct: 71 VTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGT-MVRSVH 129 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L ++ ++ + L+ + ++ P+ P+++ Sbjct: 130 SLAFALLRRMRDEKLRL---ITGAEQDAVIRELLQGHSELTGEGQQEQGPQVPITIWPEE 186 Query: 143 AN----AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + A+ L D + EDL L E + W+ A FL+ + + Sbjct: 187 CRDGIVMVGFARGLRDFLLRTVERGLGPEDLERLGEEHHRPMWVAAGKFLRE----YEQV 242 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + S ++ M E + + + +I+ + P +A L++ + N A++ Sbjct: 243 MSLGGTHSLSASELVSMALEHDVPPEISYSTVIVDDAQHLDPKSAELVARFIDQANFAVI 302 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + + H Y + Sbjct: 303 --AGDPDQSVFRFRGARPQFLQHHPVDHELRLHTSYRVQA-------------------- 340 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + + A I Sbjct: 341 ------------------------RPGAPGVHFHRADSTGNMFEFVADRIRRARLI---- 372 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAI 437 D + A++ + ++ L G+ + I I LS S L + A+ Sbjct: 373 ---DDVQWRDIAVVVRSVGMITPIRRALLAAGVPVHIDPTDIVLSQQRIVSALILAVRAV 429 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + L P+ + G + + Sbjct: 430 HHGLTLAELEELALGPIGGADAVTLRRLLRGLRQVELRRTGAVADAFQTPTRRSLEVLSE 489 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 P + + + + ++ I Q I + + S ++ K Sbjct: 490 LVLEPEPDPGLVAEVEQVLTDREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHL 549 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + +L + + + + I + + Sbjct: 550 SAVSMRGGAAGSQADRDLDAVMALFDAAGDWVERRPNSTIDAF----ITHIEEQELPTGV 605 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672 ++ + I+ + + T+I+ G+ E WP + + DL Sbjct: 606 RDRRLVVPDAVNIVTAHATSGQEWHTVIICGVQEDSWPSLSETGTLFGQEELVDLIDDGI 665 Query: 673 ----NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGT 725 + + + + F MA + + ++ + + P SR+++ + Sbjct: 666 APGTTIARVTEQLREERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSP 725 Query: 726 DFFDNLKKR--------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + ++R L +TR L +R P + R + ++ + Sbjct: 726 EDPWEPQERVVGEQQIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLAR 785 Query: 778 LI------NDPYAVY----------------------ARRILKLDFIP----HFKKDPDR 805 L P + A + L ++ Sbjct: 786 LAEAGVPGAHPDQWWGIAGPSTTRSLPVSSLSPSRIEAGMVCPLRATMSRIFTEEELAFP 845 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RG L H + + + +I+D++ E P + + + Sbjct: 846 LLRGRLLHAFAEAVALNV------DSDVARLKIMDAYQEILAAPTWLRSYRLDTWRTVLD 899 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924 E + E++ V + A++ I G+ L G DR++ G I D+K+G +P Sbjct: 900 RTKMWIETHRHIFEQVGVEVEAEVTIA-EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNSP 958 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQID---------CRKVANLFYIRLKQKFKIDCIT 975 ++T I QL L G+F V + + I Sbjct: 959 SEKTIADHI--QLLTYQLILHHGAFDGTKIRTARSTESGMTVDGATLVY--PEKDTKNIW 1014 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + + +E + L +++ L+ E Sbjct: 1015 SITQAAKTEEQLAEFENQLPDLLQELRGPE 1044 >gi|119475988|ref|ZP_01616340.1| hypothetical protein GP2143_05345 [marine gamma proteobacterium HTCC2143] gi|119450615|gb|EAW31849.1| hypothetical protein GP2143_05345 [marine gamma proteobacterium HTCC2143] Length = 934 Score = 208 bits (529), Expect = 4e-51, Method: Composition-based stats. Identities = 109/858 (12%), Positives = 248/858 (28%), Gaps = 100/858 (11%) Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD--I 305 + A++ P A + T+ + + S+ + A L++++D I Sbjct: 96 VAESSYGSALLRPSATAQQAIAAFRTLVDWRQEVRSAALRATLLTSDDSAALMNWIDQFI 155 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDT-------------SDMRNTDILENKIPNI 352 D R + L + Sbjct: 156 DLCDKNRWLVSAQIPAQLLNAFQTGSLSHCGEILGVGFEDIVPLHQALLDAAGNFVLEQQ 215 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLEL----- 406 + + V + D +E + A+ + ++ ++ A++ + R V + Sbjct: 216 RHDPAAVKTVVCDTSEQELQAAAVWAKQAIKNDPAATVAIVVPELTAQRHVVQRIVQEVF 275 Query: 407 --------------------------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 ++ + SAG PL+ + L F Sbjct: 276 EPGYNEPSCGDNNDNNDKASIISLSSAPRNLSFNFSAGYPLTDAPVIAAALDALALGFVK 335 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D + + + P + + + L L+ L Sbjct: 336 LDSETMVRICQSPFYCVSEADNE---SVSQLVSKLFGEKAFELSTAKLRQLASQTA---- 388 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 ++ + + + + T + ++ S+W L Sbjct: 389 ------------DKKSAGASEAVAWPFSDALQNIATLTRD-HTIRRPRPASEWILLLQGI 435 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L V R+L ++ F++ + + S + + E + + I G V Sbjct: 436 LNTVGWPGLRRLDSIEFQQVAQWPQIIQSLQMLDDVLPPMSFSEVVGQLHS-IAGRQVFQ 494 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAE 678 S+L +LGTLE+ L+F L L +++ WP + + NP L +Q + +AE Sbjct: 495 PQTADSSLQVLGTLEAAGLHFSHLWLTSMSDQSWPPSPSPNPLLPYSLQRQQGMPHASAE 554 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + A + + ++ S+ ++ P S R + Sbjct: 555 RELDYARSLTDRFLHSADIMIVSSVSVIDDTPATISALFARFPQIQMDALLGRPLSSLLP 614 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + R+ + Y + + P+ + L + +P Sbjct: 615 LTEIRRRFLESKLTEEYLPGDAPILQADERVRGGATLFASQSACPFRAFLSHRLGVRGLP 674 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ----------IIDSHFEKEN 847 + + DRG+L H + ++ ++ T + +Q + ++ + Sbjct: 675 VAEIGLNAADRGSLLHRACELIWQQLKSQKTLLALNNSEQMSLCEETSQYAVRELDQRRS 734 Query: 848 LPPHID--IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 L + + +++L E + I K A+ + + L DRI Sbjct: 735 LHLGARYQRLECERLKLLLNTWLNFERERGDFIVK---ETEARKVFQHGHLKLETRIDRI 791 Query: 906 DLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCRKVANL 960 D L G + + DYKT + ++ +PQL L ++ + ++ Sbjct: 792 DQLADGSLAVIDYKTSTTSIARWWGERPEEPQLPLYGMLVELAGDAVSGVGFAELRIEGC 851 Query: 961 FYIRLKQKFKIDCITN-------DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + + + D + ++L K L + G+ Sbjct: 852 ELKGIGDEDSPEAALRWQDKVKNDASVLNWEQLKRHWEKVLTALANDFVAGKAAVDPRNA 911 Query: 1014 LSEKSNIQSEYDHLARVA 1031 + ++ RV Sbjct: 912 PQ--TCQYCDFSSACRVD 927 >gi|165933138|ref|YP_001649927.1| ATP-dependent nuclease subunit B [Rickettsia rickettsii str. Iowa] gi|165908225|gb|ABY72521.1| ATP-dependent nuclease subunit B [Rickettsia rickettsii str. Iowa] Length = 838 Score = 208 bits (529), Expect = 4e-51, Method: Composition-based stats. Identities = 133/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 350 --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTTYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E + F + + ++ + + + Sbjct: 448 FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYNKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F+Q + + + Y+++ + + + Sbjct: 738 MLLENGFTQCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838 Score = 67.3 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ + V I +P + EL+ + K LP Sbjct: 7 FLKSFAKYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 52 IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP++ ++ A+ L + + + + ++ +W FL+ W Sbjct: 88 -LPLNNNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y++ L++ E + G +I+AG Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|157828426|ref|YP_001494668.1| hypothetical protein A1G_03115 [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800907|gb|ABV76160.1| hypothetical protein A1G_03115 [Rickettsia rickettsii str. 'Sheila Smith'] Length = 838 Score = 208 bits (529), Expect = 4e-51, Method: Composition-based stats. Identities = 133/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 350 --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTTYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E + F + + ++ + + + Sbjct: 448 FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHNP--SFPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYNKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELRLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F+Q + + + Y+++ + + + Sbjct: 738 MLLENGFTQCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838 Score = 67.3 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ + V I +P + EL+ + K LP Sbjct: 7 FLKSFAKYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 52 IIIPFNSLISKKNDSDY---------ISKIEELLILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP++ ++ A+ L + + + + ++ +W FL+ W Sbjct: 88 -LPLNNNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y++ L++ E + G +I+AG Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|238018400|ref|ZP_04598826.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748] gi|237864871|gb|EEP66161.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748] Length = 1158 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 117/978 (11%), Positives = 248/978 (25%), Gaps = 134/978 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + L + DL L I + Sbjct: 108 LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPTDLERGAESVKNKVLQKKLRELAICMAAY 167 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E + ++ A + + + I G P L+ T+ + Sbjct: 168 EEEISRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A++ +D + N H ++ D L + Sbjct: 226 AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGTRINW-- 269 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + + + LI N EA ++A Sbjct: 270 -----------VGFNGKRGPQIVQELEANYFTSPSKQNSTDTTIPLIRGYNREREADAVA 318 Query: 376 IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ + ++ + TR+GI I P+ +L Sbjct: 319 RRILAYVESSPEARYRDVCIMLRESETYGDTLEKVFTRYGIPHFIDRQRPMKNHPLGELL 378 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 T+L + + ++ L+K L LE L+ Sbjct: 379 TALFDIVRHSYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + ++ + ++ D T G L I Sbjct: 438 FHEGQDEESHLDAPRRARINQARQTIMDILSPWFDFAAHSEGH--TGAEWGEQLYGLLEI 495 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + ++ ++ E+ + S +I E + ++ Sbjct: 496 LQVPQRLYEWAKDAETVGDQESKAS-HEQMYNAVISFIDEISMVMKDEVLTLDEMMLLLE 554 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + I + + + GLN+GV+P++ + + Sbjct: 555 EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614 Query: 671 DLNL--------KTAEKYIGQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLV 721 +L + + M + L + + E+ S ++RL Sbjct: 615 ELADAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYASSGEDGTGLEPSLVVKRLES 674 Query: 722 LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745 LG D + R + + W R+ Sbjct: 675 LGYVGKAVDIPLSIEPDTEADYVWRPLQSLSLLSERWGALFSGHEVNPLWWGLYNWARES 734 Query: 746 DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790 D + + + S + +++ P+ YA+ Sbjct: 735 DTYRPRLAEVSRGIRDNNDVPVITKDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843 LKL+ + + GT H + L K+ + N E +L + + D Sbjct: 795 LKLEPRR--VRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLNEEEQQNLCRSVADEIL 852 Query: 844 EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890 ++ E + H ++ E +S + ++ + Sbjct: 853 QENQAGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912 Query: 891 IESIG---IHLTGFADRIDL-LKSGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943 + + L G DRID + G + DYK+G + + QL A Sbjct: 913 VPLGEDRYLRLIGQIDRIDEYTRDGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972 Query: 944 LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996 L+ A +Q A + Y +K + A + +N +E Sbjct: 973 LESAYGNTQGQSMTPAAVVYSYVKNPKIPADAPISYEDAVALAKESDAWQNSGYFSDDVE 1032 Query: 997 IVTLLQNGEQPFISHLRL 1014 ++T + N + S Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050 >gi|292492976|ref|YP_003528415.1| hypothetical protein Nhal_2968 [Nitrosococcus halophilus Nc4] gi|291581571|gb|ADE16028.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4] Length = 912 Score = 208 bits (528), Expect = 5e-51, Method: Composition-based stats. Identities = 120/864 (13%), Positives = 234/864 (27%), Gaps = 100/864 (11%) Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + +I S + A L +++ T Sbjct: 83 LLSPLQEQSLWERVIYDSSYSGALLQVPATARTAQEAWQLWHAWRL-PLQDQSLFVTEDT 141 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN---VSNEMYGRSMVISKSFLP 333 ++ + + + LD + ++ LG + Sbjct: 142 QAFLEWARAFEHHC----QVGHWLDHARLPEAVIQMLGARQISLPATVILVGFDEYTPQQ 197 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--AL 391 + + + Q V + + EE S A R L+ ++ + Sbjct: 198 QEFFVALVEQGVMLQALASQGKPERVMRVPLVDGVEEITSAARWARRRLEGAPREKIGVI 257 Query: 392 ITADRNLARRVKLELTRFGIN-------------IDISAGIPLSTTLHSSILTSLLNAIF 438 + L +V +IS PL+ +L Sbjct: 258 VPQLEFLRAQVVRIFDEIFHPEAVLPGREGIERAYNISLAQPLAHNPLVHTALLILELTK 317 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + + L++ P E +A Sbjct: 318 GELSLVEMGALLRSPFLGEAEREFSRRALLDAY--------------------------L 351 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 +K + E A L +K S S W + Sbjct: 352 RKTREARVSLGRLGAAAVSEGAEGAAYCCPALGERLQQFKAELAQLPARQSPSGWARSFA 411 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 LQ + R L + + + S G I RL+ Sbjct: 412 RWLQLLGWPGERSLNSEEQQAVSAWRKGVQSFASLDGVVPSLKQSAAIGKFRRLLADTLF 471 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--T 676 +P+ + ++GTLE+ FD + + GL++GVWP NP L +Q L + Sbjct: 472 QPESPPVP-VQVMGTLEAAGERFDGVWILGLHDGVWPPAPRPNPLLPVELQRHHRLPHAS 530 Query: 677 AEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 AE+ + A +I + RE + S + L + + Sbjct: 531 AERELAYARMVTARLLASAPTVIVSHPCREGDSDLRPSPLIAELPPIPPEALELASIEPY 590 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + T + + P + + +K P+ +A L Sbjct: 591 THQIQLTAMGETLADRQG------PPLAKGTQVEGGTALLKAQAACPFRAFAEYRLGAQG 644 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + D+G L H+ + L ++ ++ ++ + I Sbjct: 645 LEEPSVGLAALDQGILIHSALHYLWERLEDQ------QILLTHTAEELQTLVAEAAKQAI 698 Query: 856 W---RHLFHKISHSFLE--------------HEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + F ++K + + + + IG L Sbjct: 699 AGQMAVRPQTFTERFTAIEQERLELLLLEWLEQDKQRPPFTVLHQEKSQPLNLGGIG--L 756 Query: 899 TGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQID 953 ADRID L++G I DYKTG P ++ +PQL L A + A F+Q+ Sbjct: 757 ITRADRIDRLENGERVIIDYKTGRPDPHHWFGERPEEPQLPLYCIAHKEPVVAVLFAQVR 816 Query: 954 CRKVANLFYIRLKQKFKIDCITND-----KKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 ++ Y+ + + +D + + + L ++ + L + L + Sbjct: 817 RGEMK---YLGVTKAAGSVPGISDFTHVAEGPENWEGLLDQWSQVLHALAEELM---AGY 870 Query: 1009 ISHLRLSEKSNIQSEYDHLARVAE 1032 + KS L R+ E Sbjct: 871 AAVAPRDTKSCDYCALPGLCRIGE 894 >gi|34580532|ref|ZP_00142012.1| hypothetical protein [Rickettsia sibirica 246] gi|28261917|gb|EAA25421.1| unknown [Rickettsia sibirica 246] Length = 838 Score = 208 bits (528), Expect = 5e-51, Method: Composition-based stats. Identities = 132/709 (18%), Positives = 262/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L T +LTS++ + D + L+K+PL Sbjct: 261 EDLL----GNDLRLTNIGELLTSIIKILCNNFDLKLLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDILF- 349 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I LT + + P +W +E G L + Sbjct: 350 --------------TDTPHNIQAILTLTKEITEKLL-------PTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W + +P+LS+ LN+ E ++ F + + ++ + + + Sbjct: 448 FNNENWTLSAKAHPWLSKKALQILNIDYDEIAPTLYSNYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELQLNIVGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F++ + + + Y+++ + + + Sbjct: 738 MLLENGFTKCNSLSLLCHPQPLLCYSRESRNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838 Score = 68.4 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ + V I +P + EL+ + K LP Sbjct: 7 FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 52 IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP++ ++ A+ L + + + + ++ +W FL+ W Sbjct: 88 -LPLNKNESLKAAELLRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y++ L++ E + G +I+AG Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|89894432|ref|YP_517919.1| hypothetical protein DSY1686 [Desulfitobacterium hafniense Y51] gi|122483027|sp|Q24WW7|ADDB_DESHY RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|89333880|dbj|BAE83475.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1220 Score = 208 bits (528), Expect = 5e-51, Method: Composition-based stats. Identities = 125/987 (12%), Positives = 255/987 (25%), Gaps = 124/987 (12%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLE----- 111 R E + + + LP+I + + E D L V + +RL Sbjct: 19 RQEIHKESQEHPEGLPLILLVPEQATHQMEMSLAHDPQSGGILRAQVLSFRRLGWRVFSE 78 Query: 112 ----LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +I ++ L S L + A +A LA I + + Sbjct: 79 VGGGGKAVIGEVGKRMLLRRLLLNHRSDLRVFARSATRPGMADLLAQAIAEFKIYRITPD 138 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 L +++ L L + + L A P L+ + Sbjct: 139 QLRGIEDAD--ELLLQKTHELAFLYEELNKSLGTA-ARDPDDELN-LVAGKISQAPFLQG 194 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 I + G G P ++ + V LD + + T Sbjct: 195 AKIWVDGFKGFTPQELYVIQAMLGTAAEITVSLPLDPELL--------KAGTPRFKPGEE 246 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 P+ + L+D + + + + ++ + ++ Sbjct: 247 LFYEPRQTYQGLVDLAREAKASISHVFLTETHRFEKAGLKHLERFYNAYPTQTFPGGDDS 306 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVK- 403 P+ +AL A N+R E +A LR E + +++T D + + Sbjct: 307 TAPD----PLGIALFPAANKRAEVEGVARELRRLAREEGRTWRDCSVVTRDLPGYQGIIE 362 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 I + P+ +L S + + K + + +K Sbjct: 363 QVFNAHEIPYFLDHKRPVIHHPLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRID 422 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 LE L + +S K T + ++ + Sbjct: 423 ------RLENYCLAYGIHGSAWKGNRSWSYYPDPNHKEETAGLNETRQIIYDLFSPFDQA 476 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + P VT + L + + L + Sbjct: 477 IRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHLQEWAEAAHSRGDLAEAQLQNQ-IWDA 535 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + +++ + ++ I+T ++ + + + SR Sbjct: 536 VIQVLDELVAGLGEEVMDLSDFAMILTSGLENLQLGLIPPGYDQVLVGSLDRSRNPETAV 595 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH 696 L L G N+G+ P + + + L K + + + R Sbjct: 596 LFLLGANDGILPGKPSDEGVFDELERLRLESKGIMLAPKGKVQVYEEQYFIYTALTRARE 655 Query: 697 -LIYTRS-LRENNIPTIASRWLQRLL-------------VLGGTDFFDNLKKRGQCYLDW 741 L + E S + RL + Y Sbjct: 656 QLYISYPLTDEEGRGLTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALH 715 Query: 742 TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTY---------------------- 770 +KL + + FP ++ + Sbjct: 716 LQKLRQGSSLSPLWQAIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRL 775 Query: 771 --SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S ++ P+A +A+ LKL D G FH ++ + + Sbjct: 776 VTSVSRLELFARCPFAHFAQYGLKLKERS--NYRLSPPDMGQFFHAVLHDYAIALRERGL 833 Query: 829 P------EINHLMKQIIDS----HFEKENLPPHIDIIWR-HLFHKISHSFLE--HEEKIQ 875 E + + + + L + + H + H + E Q Sbjct: 834 DWGELSKEQSWQLVNETAEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQ 893 Query: 876 SSIEKIFVNIPA---------KMAI-ESIGIHLTGFADRIDLLKSGF---VDITDYKTGD 922 + + + ++ + + L G DRID G + I DYK+ + Sbjct: 894 GVFLPMELEVKFGPQEALPPLEVPLSGGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKSRE 953 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS 948 +D QL A G+ Sbjct: 954 AHVSLNQIYHGLDLQLLAYLDAALQGA 980 >gi|313894261|ref|ZP_07827826.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral taxon 158 str. F0412] gi|313441085|gb|EFR59512.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral taxon 158 str. F0412] Length = 1176 Score = 208 bits (528), Expect = 6e-51, Method: Composition-based stats. Identities = 115/978 (11%), Positives = 248/978 (25%), Gaps = 134/978 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + L + DL L I + Sbjct: 108 LGLLEQATKRPEFSSVLQQLFSEFRAFRVGPNDLERGAESVKNKVLQKKLQELAICMAAY 167 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E + ++ A + + + I G P L+ T+ + Sbjct: 168 EEEISRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLAKE 225 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A++ +D + N H ++ D L + Sbjct: 226 AVIT--IDLPMAPKALNLARR------------GEHLFSRPLEIYDTLVARYGSNINW-- 269 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + + LI N EA ++A Sbjct: 270 -----------VGFDGKRGPQIVQELEANYFTSPSKQNSTDTTIPLIRGYNREREADAVA 318 Query: 376 IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ + ++ + R+GI I P+ +L Sbjct: 319 RRILAYVESSPEARYRDVCIMLRESETYGDTLEKVFGRYGIPHFIDRQRPMKNHPLGELL 378 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 T++ + + ++ L+K L LE L+ Sbjct: 379 TAIFDIVRHNYSRDSMFLLLKTDLMPLSREAVDELENYV-LEFGIDHYKWERESWPYLRG 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + ++ + E+ D T G L Sbjct: 438 FHEGQDEEGHGDAPRRARVNQARQTIMEILSPWFDFAAHSEGH--TGAEWGEQLYGLLET 495 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + Q+ ++ E+ + S +I E + ++ Sbjct: 496 LQVPQRLYEWAQDAETVGDQESKAS-HEQMYNAVISFIDEISMVMKDEVLTLDEMMLLLE 554 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + I + + + GLN+GV+P++ + + Sbjct: 555 EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614 Query: 671 DL---NLKTAE----KYIGQAAHDFEMANGTRH-LIYTRSLR-ENNIPTIASRWLQRLLV 721 +L + AE K + + L + + E+ S ++RL Sbjct: 615 ELAEAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYASSGEDGTGLEPSLVVKRLES 674 Query: 722 LG------------GTDFFDNLKKRG--------QCYLD----------------WTRKL 745 LG D + R + + W R+ Sbjct: 675 LGYVDKAVEIPLSIAPDTESDYVWRPLQSLSLLSERWGALFSGHEVNPLWWGLYNWARES 734 Query: 746 DYTTKQPHYKRPKPFPPLEAQ---------------PRTYSFSEIKQLINDPYAVYARRI 790 D + + + S + +++ P+ YA+ Sbjct: 735 DTYRPRLGEVSRGIRDNNDVPVITKDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843 LKL+ + + GT H + L K+ + N + +L + + + Sbjct: 795 LKLEPRR--VRSFGAPEIGTFLHANLERLGNYLLDNNKQWRDLNEEDQQNLCRTVAEEIL 852 Query: 844 EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890 ++ E + H ++ E +S + ++ + Sbjct: 853 QENQGGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912 Query: 891 IESIG---IHLTGFADRIDL-LKSGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943 + + L G DRID + G + DYK+G + + QL A Sbjct: 913 VPLGEDRYLRLIGQIDRIDEYTRDGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLA 972 Query: 944 LKAG-SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996 L++ +Q + A + Y +K + + + +N IE Sbjct: 973 LESSYGKTQGESIVPAAVVYSYVKNPKIPADAPISYEDAVSLAKESDAWQNSGYFSDDIE 1032 Query: 997 IVTLLQNGEQPFISHLRL 1014 ++T + N + S Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050 >gi|325982039|ref|YP_004294441.1| putative DNA repair protein [Nitrosomonas sp. AL212] gi|325531558|gb|ADZ26279.1| putative DNA repair protein [Nitrosomonas sp. AL212] Length = 923 Score = 207 bits (527), Expect = 6e-51, Method: Composition-based stats. Identities = 102/732 (13%), Positives = 235/732 (32%), Gaps = 92/732 (12%) Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLD------------------ENKKKSALIT 393 + + + E N +EE AI R ++ + + + Sbjct: 220 WPQSLATIQRFEYTNSQEEIYQAAIWARSKIETVSNSVNSVRVGIVVPALMKYRNTLIRI 279 Query: 394 ADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + ++L L + ++S G+ L+ I L + + +F I+ + Sbjct: 280 FKEVMHPDIRLALPGAKQNIAPFNVSLGLALTNYPLIDIAFVGLALLDQKVEFNRISYWL 339 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + P E +A + + S + L+ L + Sbjct: 340 RSPFLAGSENEMSQRVLLDA------QIRRFSEPEISLERLFILVSRASGGKECPI---- 389 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 +L C++ L ++ + + ++ + ++ LQ + R Sbjct: 390 ----------------LLHCLSVLRIFRQTRLPQSDSHTV--FARIIAEVLQILGFPGER 431 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 L + F+ K + + K + E + + ++ +P+ + I Sbjct: 432 GLDSSEFQTLKKWQMLVANFAALDQVNAKTSYPEAVSRLRQMAANTLFQPETPNVP-VQI 490 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHD 687 + E+ + FD L + GL++ WP + NPFL +Q L T E Sbjct: 491 IDVFEATGMEFDHLWVMGLSDEQWPLRSHPNPFLPLELQRKAKLPWGSTLESSAYCQRLT 550 Query: 688 FEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + + +I + + + + S L R + ++++ + + Sbjct: 551 RNWLSSAKDVILSYPRYSNDRDGHELKSSPLIR-SIPLREAVILDMEQHHERIIQSCEM- 608 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 + + Q S IK P+ +A+ L + + + Sbjct: 609 ---EYIVDCESSPLGKEMAKQGIKGGTSVIKDYAACPFRAWAKHRLSITGLDAPHTGLNA 665 Query: 806 TDRGTLFHNIITELIKKRINKNTPE--INHLMKQIID----------SHFEKENLPPHID 853 +RG L H ++ +L ++ K + +H ++++++ + L Sbjct: 666 AERGLLVHQVLAQLWQQLKTKEALDDISDHNLERMLEGITNSVILQMEQYRPIALSGRFA 725 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 I + ++ +L E+K SS I I+ + L DRID L+ G Sbjct: 726 QIEQRRLFRLVLEWLVEEKKR-SSFRMIAAEEK--CLIQIGDLILNARLDRIDELEDGQW 782 Query: 914 DITDYKTGDNPKKETA-QKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKF 969 + DYKT + ++ +PQL L + + + K + ++ + ++ Sbjct: 783 IVIDYKTSRKSIQSMIGERPDEPQLPLYLVMAGMKQQAAGAAFAVIKRGEMGFMAVAREA 842 Query: 970 KIDCITNDKKKYS-------ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS--NI 1020 + + ++L E ++L + T NG+ + + Sbjct: 843 DLLPGIKAFSQLEKCTRFNTWEDLIEAWRQSLTNLATGFCNGD----ARVNPKNFPVTCK 898 Query: 1021 QSEYDHLARVAE 1032 + R+ E Sbjct: 899 FCDMQLFCRIHE 910 Score = 41.4 bits (95), Expect = 0.82, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 28/221 (12%) Query: 45 ASVTIYVPTKRAIQELRSEF--IEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNP 101 A + P +R L +F +I KK+ I ++E + L Sbjct: 21 ADSLVVTPNRRLALALNEKFNQDQIKQKKTAWYSADILPFSSLIERIYLESL-----YVK 75 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 PV + LL + + ++W + + + A LA Sbjct: 76 PVVTLPLLLTVYQEQVLWESIILSSEAGKALLRISQTARLVSEAWHLAHA---------- 125 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 W +H L + +FL A + + + + Sbjct: 126 ----WRLIHRLGDIVPNED---VREFLSWA-ETYQNITTLTRQTDQARICDLITEQYEFL 177 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 +K II G P + + ++ +V+ Sbjct: 178 DIKKP-SRIICYGFDVITPQQILFLKKL-SNCGCEVVIANP 216 >gi|281423245|ref|ZP_06254158.1| conserved hypothetical protein [Prevotella oris F0302] gi|281402581|gb|EFB33412.1| conserved hypothetical protein [Prevotella oris F0302] Length = 923 Score = 207 bits (527), Expect = 6e-51, Method: Composition-based stats. Identities = 77/521 (14%), Positives = 162/521 (31%), Gaps = 57/521 (10%) Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + N + TL + +I ++A+ + +I +L Sbjct: 414 IVDILQEVGHNYTAEGEEDPLVQESIFRMYTLFNRLEALI-AAGDLEADFNIYNRLINQL 472 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I +V E L I+G LE+R L+FD +++ NEG PK F+ ++ Sbjct: 473 ISSTSVPFHGEPVIGLQIMGVLETRNLDFDHILVLSCNEGNMPKGVNDTSFIPYAIRKAF 532 Query: 673 NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFF-D 729 L T + + A+ F + + + + T SR++ +++V Sbjct: 533 GLTTIDNKVAIYAYYFHSLLQRAQDVTLAYNKATSKTATGEMSRFMLQMIVESQQKIQFR 592 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 NL + + + + K + S + + + Y R Sbjct: 593 NLNAQQVPMQNIKKAIVKKPKV---------MEVINSIERISPTALTTYLRCQMRFYYRY 643 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH---LMKQIID 840 + + + + + D G +FH + + + L+ ++++ Sbjct: 644 VAGIKEPDNEEDEIDNRIFGNIFHRAAELFYQDKNHGGIIHESDIEDALKDKSLLTRLVE 703 Query: 841 SHFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSS---IEKIFVNIPAK 888 F ++ + +I R + L+ + K+ + V + Sbjct: 704 RAFREKLFEVNETREIKYNGLQLINRQVIIDYLKRLLQIDRKLTPFSILGLEESVEKAFE 763 Query: 889 MAIESIG--IHLTGFADRIDLLKSGF---VDITDYKTGDNPK-----------KETAQKL 932 + I+L G DRID ++ + + DYKTG N E Sbjct: 764 IDTPQGPKQIYLFGNIDRIDEIQDNHGAFIRVVDYKTGSNNSMNVKNIDDIFNPEKIDNH 823 Query: 933 ID--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADELS 987 D Q L + L+ V+ L +I+ D + Sbjct: 824 TDYYLQAILYSLILRNEHPINAANHPVSPALLFIQHATGKDYDPTLQLDKQPITDVANYQ 883 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + L ++ + N + F + K Y ++ Sbjct: 884 SEFMDQLKVLIEDIFNPDISF--NPTEKTKQCQYCPYRNIC 922 Score = 130 bits (327), Expect = 9e-28, Method: Composition-based stats. Identities = 60/468 (12%), Positives = 131/468 (27%), Gaps = 98/468 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + +L+ L+ +TI P KRA L E + P Sbjct: 4 FLQYVAEDILHKNGTN-----------LSRITIVFPNKRASLFLNEELAR-MANRPIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129 ++ ++ E + L + ++ ++ E W L D Sbjct: 52 TYITISELFREHSDKTVGDQIKL---ICDLHKIFNACTGSCETLDHFYGWGQVLLTDFDD 108 Query: 130 LYPESP--------LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + L +A +L + +++ +D+ + E++ W Sbjct: 109 IDKNMGDAHQIFTNLKNIHELDDASYLTEEQKELLKKF--FGNFSDDIASKLKERFINLW 166 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + + E L + + ++ + + I G Sbjct: 167 SN----FEEIYTRFKECLAQQGLAYEGALYREVVE---KTEIDFQNDNYIFVGFNMMQIV 219 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +L + A D + N T+ + L + Sbjct: 220 EQKLCERLQKLGK-AHFYWDFDDYY-----------MKNQYGIKHEAGTYIRQYLKYFPN 267 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LD+ + + + ++ Sbjct: 268 ELDVTNKQIYAN---------------------------------------FEQPKNITY 288 Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A E +A I+ L+ + ++ +++A++ AD NL V L +++I+ G P Sbjct: 289 LSATTENIQARYISTWLKQNGRIDDGRRTAIVLADENLLPTVIHCLPPELKHVNITTGYP 348 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPE 461 L +S + L+N L++HP K+ E Sbjct: 349 LQHAPIASFVRLLINLHTMGYSANRHSFSKKWRTMLMRHPYMKYIENE 396 >gi|269798727|ref|YP_003312627.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula DSM 2008] gi|269095356|gb|ACZ25347.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula DSM 2008] Length = 1185 Score = 207 bits (527), Expect = 6e-51, Method: Composition-based stats. Identities = 116/978 (11%), Positives = 249/978 (25%), Gaps = 134/978 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + + L + +DL L I + Sbjct: 108 LGLLEQATKRLEFSSVLQQLFSEFRAFRVGPDDLERGAEFVKNNVLQKKLRELAICMSAY 167 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L ++ A + + + I G P L+ T+ + Sbjct: 168 EEELSRHGERDIDPIM-EIVEALPQSPLME-NSHVFIDGFHWFTPTHYELIYTLFDLSKE 225 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A++ +D + N + P L+ + Sbjct: 226 AVIT--IDLPMAPKALNLARR--------GEHLFSRPLEIYDTLVARYG-SSINWVGFDG 274 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R + + P + LI N EA ++A Sbjct: 275 KRGPQIVRELESNYFISPSKK----------------NSTDETIPLIRGYNREREADAVA 318 Query: 376 IALRMSLD----ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ + ++ + TR+GI I P+ +L Sbjct: 319 RGILAYVESSEEARYRDVCIMLRESETYGDTLEKVFTRYGIPHFIDRQRPMKNHPLGELL 378 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 T+L + + ++ L+K L LE L+ Sbjct: 379 TALFDIVRHNYSRDSMFLLLKTDLMPLTREAVDELENYV-LEFGIDHYKWERESWPYLRG 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + ++ + ++ D + T G L Sbjct: 438 FYEGQDEESHLDAPRRARVNKARQTIMDVLSPWFD--FAAYSDGHTGAEWGAQLYGLLET 495 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + +++ ++ E+ + S +I E + ++ Sbjct: 496 LQVPERLYEWVKDAETVGDQESKAS-HEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLE 554 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + I + + + GLN+GV+P++ + + Sbjct: 555 EGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSMGDEGLIKDKERQ 614 Query: 671 DL---NLKTAE----KYIGQAAHDFEMANGTRH-LIYTRSLR-ENNIPTIASRWLQRLLV 721 +L + AE K + + L + + E+ S ++RL Sbjct: 615 ELANAGITLAEGALPKAFNENFLLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVVKRLES 674 Query: 722 LG------------GTDFFDNLKKRGQ--------------------------------- 736 LG D + R Sbjct: 675 LGYVDQTVEIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRI 790 + +R + P + + S + +++ P+ YA+ Sbjct: 735 ETYRSRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEINHLMKQIIDSHF 843 LKL+ + + GT H + L K+ + + E +L + + D Sbjct: 795 LKLEPR--PVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQANLCRTVADEIL 852 Query: 844 EK----ENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MA 890 ++ E + H ++ E +S + ++ + Sbjct: 853 QENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIR 912 Query: 891 IESIG---IHLTGFADRIDLLKSGFV---DITDYKTGDNP-KKETAQKLIDPQLSLEAAA 943 + + L G DRID G + DYK+G + + QL Sbjct: 913 VPLGEDRYLRLIGQIDRIDEYTRGGQTYGMVIDYKSGGAHVTAQDVYYGLKLQLMTYLLV 972 Query: 944 LK-AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL------IE 996 L+ A + A++ Y +K + + + +N IE Sbjct: 973 LESAYGKTHGGSMSPASVVYSYVKNPKIPADAPISYEDAVSLANESDAWQNSGYFSDDIE 1032 Query: 997 IVTLLQNGEQPFISHLRL 1014 ++T + N + S Sbjct: 1033 LLTHIDNKFLSYGSKRGP 1050 >gi|321314787|ref|YP_004207074.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis BSn5] gi|320021061|gb|ADV96047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis BSn5] Length = 1166 Score = 207 bits (527), Expect = 7e-51, Method: Composition-based stats. Identities = 123/1040 (11%), Positives = 274/1040 (26%), Gaps = 149/1040 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + +S P +++ + L +LI Sbjct: 44 TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRILQHTGGMSR---PFLTSTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 +Y +L+ L I + + L + + L+ I Sbjct: 148 TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + + Sbjct: 206 YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L++ + G ++ Sbjct: 260 ---YRLHQKAKELNLDITYKELSG-------------TERHTKTPELAHLEAQYEARPAV 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + + +++A N R E IA + + E K A++ + + Sbjct: 304 PYAEKQEALTVMQAANRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 + I I + + S L+ + + A+ VK L P+ + Sbjct: 364 ADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + R + ++ + + + +V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKT 583 + Q + KT + + T + + + D+ R + ++ Sbjct: 484 PLFQLQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + +E + + + +I + T +F+ SR+ Sbjct: 544 VIQLLEEFVEMMGDDEISLDLFQQMIEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L + + H MA + Sbjct: 604 TFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740 L + + + T+ S ++RL L L + D Sbjct: 664 RLYVSYPIADAEGKTLLPSMIVKRLEELFPYHKERLLTNEPEQVSDEEQLMYVVNQSVAQ 723 Query: 741 ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763 WTR+ D + L Sbjct: 724 SFTASQLRLWTREYDISDVWWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 784 YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841 Query: 824 INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870 + + ++++ ++ L + + KI + Sbjct: 842 REQKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901 Query: 871 EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917 E S I + + K + + L G DR+D +S + I D Sbjct: 902 EHAKASGFVPIGLELGFGGKGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+ + Q+ ++ + A + Y + D + Sbjct: 962 YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016 Query: 976 NDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036 >gi|219668858|ref|YP_002459293.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense DCB-2] gi|251764587|sp|B8FXD8|ADDB_DESHD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|219539118|gb|ACL20857.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense DCB-2] Length = 1218 Score = 207 bits (527), Expect = 7e-51, Method: Composition-based stats. Identities = 125/987 (12%), Positives = 255/987 (25%), Gaps = 124/987 (12%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLE----- 111 R E + + + LP+I + + E D L V + +RL Sbjct: 17 RQEIHKESQEHPEGLPLILLVPEQATHQMEMSLAHDPQSGGILRAQVLSFRRLGWRVFSE 76 Query: 112 ----LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +I ++ L S L + A +A LA I + + Sbjct: 77 VGGGGKAVIGEVGKRMLLRRLLLNHRSDLRVFARSATRPGMADLLAQAIAEFKIYRITPD 136 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 L +++ L L + + L A P L+ + Sbjct: 137 QLRGIEDAD--ELLLQKTHELAFLYEELNKSLGTA-ARDPDDELN-LVAGKISQAPFLQG 192 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 I + G G P ++ + V LD + + T Sbjct: 193 AKIWVDGFKGFTPQELYVIQAMLGTAAEITVSLPLDPELL--------KAGTPRFKPGEE 244 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 P+ + L+D + + + + ++ + ++ Sbjct: 245 LFYEPRQTYQGLVDLAREAKASISHVFLTETHRFEKAGLKHLERFYNAYPTQTFPGGDDS 304 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVK- 403 P+ +AL A N+R E +A LR E + +++T D + + Sbjct: 305 TAPD----PLGIALFPAANKRAEVEGVARELRRLAREEGRTWRDCSVVTRDLPGYQGIIE 360 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 I + P+ +L S + + K + + +K Sbjct: 361 QVFNAHEIPYFLDHKRPVIHHPLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRID 420 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 LE L + +S K T + ++ + Sbjct: 421 ------RLENYCLAYGIHGSAWKGNRSWSYYPDPNHKEETAGLNETRQIIYDLFSPFDQA 474 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + P VT + L + + L + Sbjct: 475 IRPHPEAGGPSVTVAQITEAIYELLIRLKVPEHLQEWAEAAHSRGDLAEAQLQNQ-IWDA 533 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + +++ + ++ I+T ++ + + + SR Sbjct: 534 VIQVLDELVAGLGEEVMDLSDFAMILTSGLENLQLGLIPPGYDQVLVGSLDRSRNPETAV 593 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH 696 L L G N+G+ P + + + L K + + + R Sbjct: 594 LFLLGANDGILPGKPSDEGVFDELERLRLESKGIMLAPKGKVQVYEEQYFIYTALTRARE 653 Query: 697 -LIYTRS-LRENNIPTIASRWLQRLL-------------VLGGTDFFDNLKKRGQCYLDW 741 L + E S + RL + Y Sbjct: 654 QLYISYPLTDEEGRGLTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALH 713 Query: 742 TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTY---------------------- 770 +KL + + FP ++ + Sbjct: 714 LQKLRQGSSLSPLWQAIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRL 773 Query: 771 --SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S ++ P+A +A+ LKL D G FH ++ + + Sbjct: 774 VTSVSRLELFARCPFAHFAQYGLKLKERS--NYRLSPPDMGQFFHAVLHDYAIALRERGL 831 Query: 829 P------EINHLMKQIIDS----HFEKENLPPHIDIIWR-HLFHKISHSFLE--HEEKIQ 875 E + + + + L + + H + H + E Q Sbjct: 832 DWGELSKEQSWQLVNETAEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQ 891 Query: 876 SSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGD 922 + + + ++ + + L G DRID G + I DYK+ + Sbjct: 892 GVFLPMELEVKFGPQEALPPLEVPLSGGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKSRE 951 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS 948 +D QL A G+ Sbjct: 952 AHVSLNQIYHGLDLQLLAYLDAALQGA 978 >gi|167761629|ref|ZP_02433756.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704] gi|167660772|gb|EDS04902.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704] Length = 1141 Score = 207 bits (526), Expect = 8e-51, Method: Composition-based stats. Identities = 111/950 (11%), Positives = 252/950 (26%), Gaps = 126/950 (13%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA---ADFLKIASKYWTERLVELNASSP 207 + +I + E+L + +++ + + E L + + Sbjct: 121 EVKSVISEFAQYDITEEELER--VMETAGEESRLYYKLKDIQVLYRGFMEYLEKKYIT-- 176 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + ++ +++ G TG P RL+ + H ++ +D Sbjct: 177 KEELLDVLSQMVCKSDMLKNSTVVLDGFTGFTPVQNRLLLELMIHCRKVVITVTMDDRED 236 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 ++ H +L +L I ++ L Sbjct: 237 PYVYQH--------PYQLFGLGKHMVTTLMRLARDHRIAVDEPVCLYGRPPYR------- 281 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 F D+ ++ K + + N +EEA+++A A+R + + Sbjct: 282 ---FKDHDSLAFLERNLFRYHGKGFGKEPESIGIHVTRNPKEEAMAVAGAIRALVRKEGY 338 Query: 387 --KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 ++ +I ++ ++ + I + + + SLL+ + + Sbjct: 339 RYREIGVIVSNMDVYGDDLEQAFAMYEIPAFMDHKRSILLNSFVEYIRSLLDMAEQNFTY 398 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 ++ ++ LA F F E I K + K Sbjct: 399 ESVFRFLRTNLAGFNFDEVDRLENY-----------VIGLGIKGYKRWQEKWVRRLKGME 447 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 VD +L + + + + ++ + L+ Sbjct: 448 EEELEALNHCRIILVEK---VDGLLYVLKQRSKTVRDITMALYEFMVREDLQVKLAALEE 504 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 E + + + + + LF K +E K + E+ ++ ++ V Sbjct: 505 RFQAEGKLALAKEYAQVYRIVIELFDKFVELLGDEKVSLNEYCKLLDAGLEEARVGVIPP 564 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTA 677 + +RL + L G N+ P + + LS + Sbjct: 565 SVDQVVAGDVQRTRLKDIKALFFVGANDTYLPGSLLRTGLLSERDREKFARERLSLSPGG 624 Query: 678 EKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 ++ M + L S + S +Q L L + + R Sbjct: 625 KEQAYIQKFYLYMNLTKPSEQLNIYYSKVSADGKSIRPSYLIQELRRLFPLLSVQDEEGR 684 Query: 735 GQCYLDWTRKL---------------DYTTKQPHYKRPKPFPPLEAQPRTY--------- 770 + T K+ + Y K P +++ + Sbjct: 685 ALALREITEKMGIGYLIRGFQGNGEGMDAAWKELYTWYKKSPKWQSKVESLIKAGYYRRP 744 Query: 771 -------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S + +++ +A + L L + D D G + Sbjct: 745 MDGLTEAVAKRLYGEEFEDSITRMERFQTCAFAHFLTYGLNLQERQ--EYDFQAVDMGNV 802 Query: 812 FHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLF 860 HN + +K + + + + ++ + Sbjct: 803 CHNALERFSRKVEKEGCGWVGLKEEKRASFIDESVEEAITDYGNSVLYSSARNEYMIVRM 862 Query: 861 HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDI 915 ++ + ++ + G DRID + G V + Sbjct: 863 KRMLERTVWALTKQLSAGDFQPSAYEFRFA----------NGKIDRIDTCEDGDKVYVKV 912 Query: 916 TDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKID 972 DYKTG + QL + A + ++V A +FY R++ Sbjct: 913 LDYKTGSKAFDVVALYHGLQLQLMVYMEAAVKAEQKKHKEQEVVPAGVFYYRIQDPLVDK 972 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 ++ EL + NL + V S + + S Sbjct: 973 QEEAAVEEALLKELKPDGMINLKDEVLQHLEHRTEGESLAVPVKFNKNGS 1022 >gi|229003979|ref|ZP_04161784.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4] gi|228757255|gb|EEM06495.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4] Length = 1177 Score = 207 bits (526), Expect = 9e-51, Method: Composition-based stats. Identities = 127/1016 (12%), Positives = 274/1016 (26%), Gaps = 155/1016 (15%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + I G ++I + S + + S + + L +++ + Sbjct: 54 QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 110 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 L + A ++L +I + +++ + + Sbjct: 111 EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 157 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + + L+ Y L+ + I I Sbjct: 158 SGDEQKLLANKMYDLQLLYEDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 215 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D + + + Sbjct: 216 GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 257 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L + E VK+L ++ + + + E++ Sbjct: 258 -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 312 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409 + D+ L A N R E +A +R + + + ++ + + +K T + Sbjct: 313 QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 372 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468 I I P+S + S L I + AI +K L K + Sbjct: 373 DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMREEM 432 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-- 526 + E L + R + + R EE +V Sbjct: 433 DEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 492 Query: 527 --ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + + + L D K E L ++ + + Sbjct: 493 ISLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 551 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 +L +E K + +ID++T ++ + I SRL + Sbjct: 552 MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 611 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696 + G NEG+ P + LS + +L T + + + ++ Sbjct: 612 FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 671 Query: 697 LIYTRSLREN-NIPTIASRW---------------------------------------- 715 L + L + ++S + Sbjct: 672 LYISCPLADEEGKTLLSSSFIKKVKRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLS 731 Query: 716 --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761 +R G DF+ ++ +W +K Y+ Sbjct: 732 YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 791 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 L S S ++ YA +A+ L L F D D G LFH + ++ Sbjct: 792 DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 849 Query: 822 KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868 K + N+ +++ + + + +E P I +I S + Sbjct: 850 KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 909 Query: 869 EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913 E S + + +P M ++ + L G DR+D ++G + Sbjct: 910 LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 969 Query: 914 DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 I DYK+ + Q+ + + + + A + Y + Sbjct: 970 RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1025 >gi|228996314|ref|ZP_04155958.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17] gi|228763418|gb|EEM12321.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17] Length = 1166 Score = 207 bits (526), Expect = 9e-51, Method: Composition-based stats. Identities = 127/1016 (12%), Positives = 273/1016 (26%), Gaps = 155/1016 (15%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + I G ++I + S + + S + + L +++ + Sbjct: 43 QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 99 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 L + A ++L +I + +++ + + Sbjct: 100 EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 146 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + L+ Y L+ + I I Sbjct: 147 SGDEQKLLANKMYDLQLLYDDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 204 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D + + + Sbjct: 205 GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 246 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L + E VK+L ++ + + + E++ Sbjct: 247 -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 301 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409 + D+ L A N R E +A +R + + + ++ + + +K T + Sbjct: 302 QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 361 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468 I I P+S + S L I + AI +K L K + Sbjct: 362 DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMREEM 421 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--- 525 + E L + R + + R EE +V Sbjct: 422 DEFENYCLAYGVQGKRWTAGEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 481 Query: 526 -HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + + + L D K E L ++ + + Sbjct: 482 IRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 540 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 +L +E K + +ID++T ++ + I SRL + Sbjct: 541 MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 600 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696 + G NEG+ P + LS + +L T + + + ++ Sbjct: 601 FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 660 Query: 697 LIYTRSLREN-NIPTIASRW---------------------------------------- 715 L + L + ++S + Sbjct: 661 LYISCPLADEEGKTLLSSSFIKKVKRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLS 720 Query: 716 --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761 +R G DF+ ++ +W +K Y+ Sbjct: 721 YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 780 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 L S S ++ YA +A+ L L F D D G LFH + ++ Sbjct: 781 DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 838 Query: 822 KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868 K + N+ +++ + + + +E P I +I S + Sbjct: 839 KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 898 Query: 869 EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913 E S + + +P M ++ + L G DR+D ++G + Sbjct: 899 LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 958 Query: 914 DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 I DYK+ + Q+ + + + + A + Y + Sbjct: 959 RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1014 >gi|325291020|ref|YP_004267201.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus glycolicus DSM 8271] gi|324966421|gb|ADY57200.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus glycolicus DSM 8271] Length = 1147 Score = 207 bits (526), Expect = 1e-50, Method: Composition-based stats. Identities = 132/1024 (12%), Positives = 276/1024 (26%), Gaps = 143/1024 (13%) Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 I + G + S + F ++Y P + + + L R++ ++ L Sbjct: 50 LIAVLGTGGIFQTEVLSFRRLAFRVFNEAGGITY---PHIHQAGKCMILYRILHKMKDSL 106 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWL 182 + + A+ +A++I ++ L + + + Sbjct: 107 -------------KVFANSADRQGFVNTIAELITELKQYHISPHRLEEVSGEFEDDNFLK 153 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L + E L E + L A+ I I G G Sbjct: 154 DKLLELSSIYAVFEEALRER--YHDSDDDLTLAAAKIPETRTYDGAEIWIDGFDGFTVQE 211 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ++ ++ V D I + T + H KL+ Sbjct: 212 YSVIESLLGKAGRISVSLCADGP-------GIGPAGGLDIFAPTKEAYH------KLVKV 258 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 R ++++ + R S+ + D+AL Sbjct: 259 AQASRTEMEKPLLLETAHLPRFKNSSEL-------AHLERYLNTYPYQTYDSKTKDIALF 311 Query: 363 EADNEREEAISIA-IALRMSLDEN--KKKSALITADRNLARRVKLE-LTRFGINIDISAG 418 A N E + A +R D+N + ++ + + + +GI + Sbjct: 312 SAANIFSEIEAAARDIIRQCRDQNMRFRDITVVAGNLDKYQSFIEIIFAEYGIPYFLDRK 371 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + ++ +L ++L+ + + A+ +K L+ + + Sbjct: 372 VEITNHPLVRLLLAMLDIFGENWSYEAVFRYLKTGLSGIEQEKIDRLENYVLACGIRGSR 431 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + L + +R+ E Sbjct: 432 WTKQEEWT-MSPDFLPDEKSSGQYREQLEEINRIRLEVAGPLQEFRGKTKGRRQTAEICT 490 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + C + + Q+ + + L +F +I+E Sbjct: 491 AVYDFLCRIGVPAKLEQSIAEFRQS-----GEVNLASEYAQVWNILMEVFDQIVEIMGDE 545 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 K + + DI+ + V + + S+ L + G+N+GV+P Sbjct: 546 KLSLKRFADILKTGLAQFKVGLIPASLDQVLVGSPERSKSHKIKALYVLGVNDGVFPSAI 605 Query: 659 AKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGT-RHLIYTRSLRENNIPT 710 K LS ++ L E + + +++ + +L + + + T Sbjct: 606 IKENILSDPDRAVLGKTGIELAKDTRTQAFDEQYLIYKVLTTSGNYLRLSWPIADQEGKT 665 Query: 711 -IASRWLQRLLVL--------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 S + R+ L G + + + + + + L Sbjct: 666 LRPSIIISRIRKLFPMVAETGNVLTSTAGAEELELITGQASAFSQMVQALRRKADGREIS 725 Query: 756 RPK----------------------------PFPPLEAQPRT--------YSFSEIKQLI 779 R PP+ S S +++ Sbjct: 726 RLWRDTCIWFAGQEEWRDRCRAVRAAFLYKNIAPPISGDKVAALYGQPAYASVSRLERYT 785 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEIN 832 P+A Y + L D GT H +I ++ + + Sbjct: 786 ACPFAFYVQYGLGAKERK--IYRFSPPDVGTFMHGVIEAFSRQVAEQALSWRELDKEWCE 843 Query: 833 HLMKQIIDSHFEKE---NLPPHIDIIWRH-LFHKISHSFLEH--EEKIQSSIEKIFVNIP 886 + QI+D K L ++ + E +S E + + Sbjct: 844 IKVSQIVDEMLAKMQGTGLAASKRYTALTMRLKRVLVRAVRLIAEHIRRSGFEPLGYEMD 903 Query: 887 AK---------MAIESIG-IHLTGFADRID--LLKSGF-VDITDYKT-GDNPKKETAQKL 932 + +ES IHL G DR+D G + I DYK+ K Sbjct: 904 FSESGDFPPIVIELESGEKIHLVGRIDRVDALKTAEGTYLRIVDYKSNNKEFKLADVYYG 963 Query: 933 IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + QL A+ I L Y R+ D + K+ S +E+ + + Sbjct: 964 MQIQLMTYLDAIWENKGLDIPRPLLPGGLLYFRID-----DPLIRGSKQTSKEEIEQAIM 1018 Query: 992 KNLI 995 K L Sbjct: 1019 KQLK 1022 >gi|158312779|ref|YP_001505287.1| UvrD/REP helicase [Frankia sp. EAN1pec] gi|158108184|gb|ABW10381.1| UvrD/REP helicase [Frankia sp. EAN1pec] Length = 1135 Score = 207 bits (526), Expect = 1e-50, Method: Composition-based stats. Identities = 130/1011 (12%), Positives = 265/1011 (26%), Gaps = 119/1011 (11%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE AS+ + ++RA + LR F G + P + Sbjct: 30 TLVEAVARRIEAGADPASLLVLTFSRRAARHLRERFAVRLGAAAVG-PAAWTFHAWCLGL 88 Query: 89 FTADLLL-SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 A +S ++ L LI + ++L N Sbjct: 89 LRAYGAATPLGGFRLLSGPEQDARLRDLI--------EGSRELGRPVWPDPLAGCLNTRG 140 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 A+ + ++ L + W A+F A Sbjct: 141 FAEEIRMLLTRAREIGVDPPALARIARRVGRSDWAAVAEFYSDYLDALGAEGALDYADLV 200 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + ++ + + + PA RL++ VA +V D Sbjct: 201 HAAANLAAEPDVLAQLRQRYRAVFVDEYQDTDPAQERLLTAVAGGGGDLVVF--GDPDQS 258 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + + +A L + + Sbjct: 259 IYAFRGAEVRGLLDFPNRFPRADGSPAPVAALRRCRRMAPA------------PLAASRR 306 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 + LP +R+ + + VA EA +IA LR EN Sbjct: 307 VAASLPSAGLPVRHVRAHRDLVSAGAVGPGQVAARTYPTAGAEAAAIAELLRREHLENGV 366 Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--- 440 A++ ++ LT G+ + ++ G P + +++L + L Sbjct: 367 DWDDMAVLVRSTAPLGLLRRVLTAAGVPVSVAGGELPPAREPAAALLLTALRCADDPAVQ 426 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 L+ PL + A R + R +T + Sbjct: 427 LTPETARALLTSPLGGADPAGLRALGRELRAHDAAARAAARAAARGTAARGTTARDSTAR 486 Query: 501 NN----------------------------------THVPHWQSRLSEEDKELAVLLVDH 526 + + +E L Sbjct: 487 DAVGPIALPEPRSAPEADGSVLGLPASSAELLREAVADPERVLLAVPDELAAPVRRLGRL 546 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + L +++ + S+W +L + L Sbjct: 547 LRTVRAELRRGAAPEDALWTLWTASEWGPRLERASAVGGPAGRSADRDL---DAVVALFD 603 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 ++ E + ++ + I ET + + + +T+ +L S+ L ++ +++ Sbjct: 604 AVGRLGERRGPGFGVSSVVEELTRQQIAPETAQARAGRPATVRLLTAHRSKGLEWEVVVV 663 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMAN--GTRHLI 698 G+ +GVWP ++ L +T E+ + F +A R L+ Sbjct: 664 CGVQDGVWPDLRQRHTLLGAEQLDSPRNGGVRPPRTREELLADERRLFYVALTRARRRLV 723 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGG-------------------------TDFFDNLKK 733 T ++ SR+L L V + +++ Sbjct: 724 VTAVDGADDDGEQPSRFLAELGVQVESVRARPPRPLTLVGLVAALRRLTVDPEASAAMRE 783 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 L T + P T S + + Sbjct: 784 AAGVRLAALAAASDETGRALVPAAHPDRWWGLLDVTSSDVPVVAPDAPIRLSGSSLSGLS 843 Query: 794 D---------FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + G + H + E+ R ++ + ++ H E Sbjct: 844 SCGLRWFLEHEANAAEPASPAQGFGKVVHALADEVTTGRTEARLEALDARL-DLVWRHLE 902 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFA 902 ++ R + FLE + E + + + + + L GF Sbjct: 903 FDSRWRS--EQERAAAREALGRFLEWHAAQR-GREVVASEVRFSCDIEVAGRVVRLRGFI 959 Query: 903 DRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 DR++L +G V + D+KTG P + QL A++ G+ + Sbjct: 960 DRVELDDAGRVHVVDFKTGRTPPSRRDLATHA--QLGSYQLAVREGALDPV 1008 >gi|331082718|ref|ZP_08331841.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 6_1_63FAA] gi|330400337|gb|EGG79979.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 6_1_63FAA] Length = 1144 Score = 207 bits (525), Expect = 1e-50, Method: Composition-based stats. Identities = 123/925 (13%), Positives = 252/925 (27%), Gaps = 127/925 (13%) Query: 158 IIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + E EDL + +K + + + L E + + M Sbjct: 128 ELRQYEISAEDLEDILENLASSPELYYKLQDIKTLYQGFFDYL-EGSFITQEEVLD-AMG 185 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 A K +++ G TG P +L+ T+ + V I Sbjct: 186 RVAPLSKKLKDSVLVLDGYTGFTPIQIQLLETLLDICQEIYVTVT--------IAAGEDP 237 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 S SL ++ I ++ E G P Sbjct: 238 YKMGSPHELFYLSKQTVASLLRIAKEKKISWKEYW-----IPEGKGTYQGRFADNPPMAF 292 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393 + + K P Q V + EA N E A +R + + A+IT Sbjct: 293 LEKNVFRYRKKKYPKPQNA---VQIYEAQNPASEMEMTAGQIRRLVRTKGYRYRDFAVIT 349 Query: 394 ADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 D + R+ I I + L + ++ I + + ++ +++ Sbjct: 350 GDMQVYAPAASRAFKRYEIPCFIDEKHSVFLNPFVEYLRAAVDMIVENFSYESVFRMLRC 409 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 L E I + + + + P ++ Sbjct: 410 GLNDISTEEADRLENYVIAM-----------GIRGFSRWQQEWVRSYR--GENPEECVQI 456 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 L + TP + +T + ++ + K +N E Sbjct: 457 DRIRASLVEKWQPFYKKMKTPDASVRTYTEALYEYITANKIQKKLKEFTKNF-EAEGNLS 515 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + + + + +L K++E K E+ +I+ + V S + + Sbjct: 516 LVKEYSQIYEIVMNLLDKLVEILGDKKVRIREFKEILEAGLSEAKVGIIPPTSDQVLVGD 575 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684 +RL + + G+NEG PK LS + + +L E+ + A Sbjct: 576 MERTRLKDIKIVFFVGVNEGKIPKEQQAGKLLSDLNREELKGSLKERGLSLAPTAKENLY 635 Query: 685 ---AHDFEMANG-TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDN-----LKKR 734 + + + + + S N P S + ++ L + + + Sbjct: 636 TQKFYLYLNLTKPSERIYLSYSRLSSNGEPLSPSFLVSQIQKLFPDAIREWDVPLFAESK 695 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------------------ 770 + ++ + + Sbjct: 696 YGALDKLSEEIRKQDRTSPVFEELMSWFTSQKDYAELINGLIDAAYYVNPQESISKGVAE 755 Query: 771 ---------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 S S ++Q + + L L + + + D GT HN + + Sbjct: 756 ALYGTELSNSASRLEQFAKCACSHFLSYGLMLRER--VRYEFNMADMGTFLHNSLDLFAR 813 Query: 822 KRINK-----NTPEINHLMK------QIIDSHFEKENLPPHIDIIWRHLFHKISHS--FL 868 K + + + ++++ E L + + ++ + Sbjct: 814 KVREQGKSWIDLEDAERDALAENCVTEVVEKSGETILLSSARNAYIINRVKRMVKRSVWA 873 Query: 869 EHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHLTGFADRIDLLKSGF----VD 914 + Q + + +HL G DRID+ + V Sbjct: 874 LQNQLKQGEFYPALTEWAFGEKDNIDSLNFDLATGQKLHLKGRIDRIDVCQDKENHLYVK 933 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + DYK+G + QL+L A L+ F + A +FY Sbjct: 934 VIDYKSGTTQLDLIKLYYGLQIQLALYLNAALELEKKRFPD-KIVQPAGVFYYN-----T 987 Query: 971 IDCITNDKKKYSADELSEKSLKNLI 995 D I N + + + E+ LK L Sbjct: 988 KDPILNKEDVKNPENPQEEILKKLK 1012 >gi|304403944|ref|ZP_07385606.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9] gi|304346922|gb|EFM12754.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9] Length = 1207 Score = 207 bits (525), Expect = 1e-50, Method: Composition-based stats. Identities = 116/935 (12%), Positives = 256/935 (27%), Gaps = 118/935 (12%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-------EKYGMWWLLAADFL 188 L L + L +++ + L L + L Sbjct: 108 LRLFQGAGGQPGFIERLGELLTEWKRYGVDNGRLADLVGTASASEGGAASPLLVRKLHDL 167 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L A + + I I G G P ++ Sbjct: 168 RLIYEAMELETAHLYAD--AEDYLTYLARGYALSPSLHGAEIWIDGFHGFTPKEYEALAA 225 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V LD ++ + + + T+ Q L +L + + Sbjct: 226 IIGSAANVTVNLTLDRPYDG------GDRPHELELFHPSAQTYIQ--LRELAEAGGVDIA 277 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 V L + + + + + R + + + Q+ ++L A N R Sbjct: 278 SVTSLDEALPRLPRFAHSPVLAHVERHYATRRPMADTKASMFDPQRPEGQISLHAAPNRR 337 Query: 369 EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTT 424 EA + + E + A++ + EL + I + S Sbjct: 338 AEAEAAVRDMVRRAREEGYRWRDMAIMVRNATDYTDYLTELMQDYQIPYFLDQKRTASHH 397 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK--NALELVALRGNKNS 482 + S L + + A+ +K L G E + + LE AL + Sbjct: 398 PLVEFIRSSLETVLHGWKYDAVFRCMKTELLFPGENEASRLTRESFDLLENYALAAGIDG 457 Query: 483 YDIMDLKSLVLD-----RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + +++KS A T + ++ E +E V + + + Sbjct: 458 WRWLEIKSWRPLVRESLEQAEAAEATRTELERFQVVLEAREAIVAPLRQLSDALQGARNV 517 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 +T + L + + + + ++ +L +++E Sbjct: 518 RTMCEALYVLLDQAGAADRLERWSRADAEAGRVRQARS-HRQLWDSVMALLDQLVEMTGD 576 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + +IT +D + + I +R + G N+GV P Sbjct: 577 EPLSPELFAGMITTGLDSLKLASVPPSLDQVLIGSVDRTRSGEVKVCYVLGANDGVLPMR 636 Query: 658 TAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIP 709 ++ L+ + L + + + A RHL + ++ + Sbjct: 637 MQEDGVLTEQERDMLADAGMQLAPSVRRRLLDERFMIYNALSAPSRHLWVSYAMADEEGK 696 Query: 710 T-IASRWLQRLLVLGG---------------------------TDFFDNLKKRGQCY--- 738 + S ++ L + +L + + + Sbjct: 697 SLHPSELIRHLRAMFPSLAERGIYSDPLAAMSTEEQLSFATRPHAALPHLIAKLREWRQG 756 Query: 739 -----------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------TYSFSEI 775 +W L T Y+ +P P E S S + Sbjct: 757 AAIQPLWWDVFSWYAIRPEWQEALRRRTASLDYRNEEPPLPPETATMLYGERLRASVSRM 816 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ ++ P+ +A L+L + D G LFH ++ + K + + Sbjct: 817 ERFVSCPFQHFASYGLRLQER--AVYRIEAPDIGQLFHAALSRVADKFGRRWGAVTDEQA 874 Query: 836 KQIIDSHFEKENLP--------PHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885 ++ I + + + ++S + + I Sbjct: 875 AAAASEVVDELAPRLQSEILLSSGRHRFMLGRLKAIISQAAIMLGDHARRASFHPVGLEI 934 Query: 886 PA--KMAIE--------SIGIHLTGFADRID--LLKSG-FVDITDYKTGDNP-KKETAQK 931 + + + L G DR+D + G + + DYK+ + E Sbjct: 935 DFGPEGTLPSLVVPLPDGGEVELVGRIDRVDAAETEDGLLLRVLDYKSSATSLRLEEVAF 994 Query: 932 LIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965 + Q+ L GS K A + Y + Sbjct: 995 GLSLQMLAYLDVILTHGSNWLGKEVKPAGVLYFHV 1029 >gi|229586675|ref|YP_002845176.1| RecB family exonuclease [Rickettsia africae ESF-5] gi|228021725|gb|ACP53433.1| RecB family exonuclease [Rickettsia africae ESF-5] Length = 838 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 132/709 (18%), Positives = 261/709 (36%), Gaps = 103/709 (14%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ ++ E ++ EE I+ ++ A++T + L R L ++ Sbjct: 204 PASKQISDGISYYEPNDIYEETKQISYI---CSRNKDRRIAIVTNNNKLKRVYCNFLDKY 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + G L + +LTS++N + D + L+K+PL Sbjct: 261 EDLL----GNDLRLSNIGELLTSIINILCNNFDLKLLFLLLKNPLINCP--------TVQ 308 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L +E+ +E L+D + Sbjct: 309 QLELMLSNKNRFISSPKYLLQL------------------QFDNEDIREYCRNLIDIL-- 348 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 +D L + LP +W +E G L + Sbjct: 349 --------------------FTDTPHNIQAILILTKEITEKLLPTIWEKEGGAELLEFLT 388 Query: 590 KIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ I + L+ K ++++ I + L FD +IL Sbjct: 389 NLTAYSKYINSTDKKDFPKIFSFLLSNIKYY-KNTDAASIIIGRPEDLALCEFDLIILPH 447 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 N W +T +P+LS+ LN+ E + F + + ++ + + + Sbjct: 448 FNNENWTLSTKAHPWLSKKALQILNIDYDEIAPTLYSDYFNLFLQNKQIVILNAKKYDGK 507 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 ++ S L + G+ +L Y +D K + K + P + P Sbjct: 508 LSVPSNLF--LKLEKGSVSPRDLITGSSNY------MDTVVKPRYDKSIEIHSP--SFPT 557 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK----KRI 824 T S +EI+ LI +PY YA++IL L H ++P +D G L H ++ E K + I Sbjct: 558 TLSVTEIETLIRNPYGFYAKKILGLRKKDHIWEEPKISDFGNLIHKVLEEYSKNYDKQYI 617 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N N + + + I + LP + W+ S +F+ + + + + ++I+ Sbjct: 618 NLNLLDKQNALINIGNHILYSTILPSYTKKTWQIKLTAFSKAFILFDIERRKNCKEIYFE 677 Query: 885 IPAKMAIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + I + G ADRI++ KS + I DYKTG P K+ + + PQL +E+ Sbjct: 678 TKGELQLNIIGQDIKIIGIADRIEISKSNNITILDYKTGTIPTKKEIELGLSPQLIIESL 737 Query: 943 ALKAGSFSQIDCRKVAN----------------------LFYIRLKQKFKIDCITNDKKK 980 L F++ + + + Y+++ + + + Sbjct: 738 MLLENGFTKCNSLSLLCHPQPLLCYSRESKNPVINNNITIAYVKITS---TEPYVHTTEI 794 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E + L++++ + F L LS+ ++Y HL+R Sbjct: 795 ALSIETLNRHKAGLVKLLEHYITNKF-FSYDLNLSK----YNDYLHLSR 838 Score = 61.9 bits (148), Expect = 7e-07, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ + V I +P + EL+ + K LP Sbjct: 7 FLKSFAEYIIDKLGKD------------TKVQIILPNNFSCLELKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II ++ +K +D +S I+ LL L+ +I ++ Sbjct: 52 IIIPFNSLISKKIDSDY---------ISKIEELLILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP++ ++ A+ L + + + + + +W FL+ W Sbjct: 88 -LPLNKNESLKAAELLRKLFNDLIINNINIKLIE---VYNNSNYWQKIYKFLEYCFLRWQ 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 E + + Y++ L++ E + G +I+AG Sbjct: 144 EEISFTQKQTKAVYKLKLLQEEIIKIKTG-HKQVILAGI 181 >gi|251764597|sp|B7GM52|ADDB_ANOFW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB Length = 1154 Score = 206 bits (524), Expect = 2e-50, Method: Composition-based stats. Identities = 129/1005 (12%), Positives = 272/1005 (27%), Gaps = 146/1005 (14%) Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------LLAAD 186 L+L A+ + L ++ + L E+ Sbjct: 104 EQLTLFRKAADKRGFIEQLEQMLTEYKRYCVTPATLKQ-TEEQLRRHATANETVLADKLK 162 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 + + + +++ + L+ + H + I + G P ++ Sbjct: 163 DTAMIFEQFEQQMAHHYVD--SEDYLRLLAEKIRHSSYMKRARIYMDGFYEFTPQEYMVI 220 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + H V LD + ++ T+ T+ Q L + + I+ Sbjct: 221 EQLFIHCPHVTVALTLDAPY--------EQLPDDLHVFRNTWRTYAQLRDIALQNGVPIE 272 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + + R R + P +K + + EA Sbjct: 273 KVEQLRHNVRHKHEELRHLEAHYDDRPVC---------------KWEKQTEAIIIGEATT 317 Query: 367 EREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLS 422 R E IA + + + + AL+ + R V + I I P+ Sbjct: 318 RRAEIEGIAREIIRLVRDEGYRYRDIALLIRNVGDYRNVLKTVFADYRIPYFIDEKEPML 377 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKN 481 L + + A+ + A+ VK + R + LE L Sbjct: 378 DHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVHDMRMAMDQLENYVLAFGIQ 437 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE--EDKELAVLLVDHILQCITPLVTYKT 539 + + + + + + E ++L + + + + + T + Sbjct: 438 GDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLVISPLLVLQKRLKQAKTGRE 497 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + E+ + L + +E Sbjct: 498 QCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARH-HEQVWQAFIDLLDQYVEILGDET 556 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + ++ II + + + I SRL N L G+NEGV P Sbjct: 557 LSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNIRCTFLVGVNEGVIPMRKN 616 Query: 660 KNPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT- 710 + LS + L + E+ + + + + L T +L T Sbjct: 617 DDGMLSETDRELLYHYSLHVAPASRERMLDEPFLLYLALVSSSERLYVTYALSNEQEKTL 676 Query: 711 IASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--KRPKP 759 + S +++RL + G F L+++ + L +Q ++ Sbjct: 677 LPSMFIKRLTDMFPNVTKMQWGTDPFLLPLQQQLAYVTNDVATLGPLVQQLEAWKRQYAI 736 Query: 760 FPPLEAQPR-----------------------------------------TYSFSEIKQL 778 P S S ++ Sbjct: 737 EPMWWDVYNAYVQHEQWKERIAVVVRALFYENRAKRLNKQLAKELYGKKVKASISRMETF 796 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN------ 832 P+A +A LKL F+ D G LFH + + + + P Sbjct: 797 NRCPFAHFAAHGLKLKERTVFQ--LKAPDMGQLFHQALKVIADRLRQEQLPWSQLSKQQC 854 Query: 833 -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNI 885 ++QI ++ L H + I + + E +S I V + Sbjct: 855 EQLSYEAVEQIAPYIQQEVLLSTHRYRYMKKKLQTIMTKATTVLSEHAKRSGFVPIGVEL 914 Query: 886 PAKM--AIESIGIHLT--------GFADRIDL--LKSGF-VDITDYKT-GDNPKKETAQK 931 + + L+ G DR+D + G + + DYK+ Sbjct: 915 GFGDGEPLPPLTFTLSDGTVLQFVGRIDRVDQAMSEQGVLLRVIDYKSKQKTLDLTEVYY 974 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + + A + Y + + + + EL +K Sbjct: 975 GLALQMLAYLDIVLEYAEKLVGTSAFPAGVLYFPI-----HNPMMKVNEWLDEHELEKKF 1029 Query: 991 LKNL---------IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 L+ + V L+ +P S L + + N + Sbjct: 1030 LEQFKMGGYVLADEKTVRLMDEHVEPGTSSLIIPVRLNKNGTFAQ 1074 >gi|291538109|emb|CBL11220.1| ATP-dependent nuclease subunit B [Roseburia intestinalis XB6B4] Length = 1179 Score = 206 bits (524), Expect = 2e-50, Method: Composition-based stats. Identities = 117/949 (12%), Positives = 247/949 (26%), Gaps = 126/949 (13%) Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPV 208 + +I + + L ++ L + + +TE L Sbjct: 120 GEVKSLISELMQYNVSPDALAEFLEKEPLGEGLRLKMQDVLTMYQGFTEYLK--GRYITA 177 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + L+ AE I++ TG P RLM + V +D Sbjct: 178 EEVLELLYDVAEESELLRNSVIVLDEFTGFTPIQNRLMEKLLVLAKKVSVSVTMDVREDF 237 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + E + SL K+ + + E+ L ++ Sbjct: 238 YQCRGVHELFAMSKKTV--------ASLLKVAELCKVPVEEPLVLPTGKQ-----RRYVN 284 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 + L ++ + ++ + + N REE A + EN Sbjct: 285 AADLYFMEQNLFRPGAGSYRYKASEQSMQHIRITSLKNPREELKFAAREIVRLTRENGYR 344 Query: 387 -KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + A++T D V ++ I I + + ++L I + Sbjct: 345 YRDIAVVTGDVQQYGNYVPEIFEQYHIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYE 404 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ LA E S + + L +DR+ Sbjct: 405 SVFRFLRCGLAARVVTEAKNSDKEPDPAATEDLTQQPETGSHGLTEQEIDRLENYVLARG 464 Query: 505 VPHWQSRLSE----------EDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLS 549 + ED + + + + PL+ K+ T S Sbjct: 465 IRGASRWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYS 524 Query: 550 ISDWT--KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + + N + +++ K + L K+ E+ D Sbjct: 525 LIRRLNMEQLLKERGNFFEAHGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSD 584 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 I+ + V + T+ + +RL + L G+N+GV PK + +S+ Sbjct: 585 ILDAGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQF 644 Query: 668 MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYT-RSLRENNIPTIASRWLQR 718 + + A + + + + L T + + S + Sbjct: 645 EREKMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGT 704 Query: 719 LLVLGGTDFF---------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 LL L + L + L + Sbjct: 705 LLKLFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGER 764 Query: 770 Y---------------------------------SFSEIKQLINDPYAVYARRILKLDFI 796 S + ++Q +A Y L+L Sbjct: 765 EKVMQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKER 824 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFE----K 845 + D G ++H+++ K + L+ Q ++ Sbjct: 825 E--LQQFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIG 882 Query: 846 ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG- 895 + + + + + + + + + Sbjct: 883 DVFEDARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGED 942 Query: 896 --IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLE---AAALKA 946 + L G DR+D I DYK+G + QL + A L Sbjct: 943 EKMRLRGRIDRVDTYETDDKVYVKIIDYKSGNTTFSLLNFYYGLQLQLVVYMNAALELTK 1002 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + D + A +FY + D + + + S +E+ L+ L Sbjct: 1003 KKYKGKD-TEPAGIFYYHIT-----DPMVDADGQESEEEIRRSILEQLK 1045 >gi|251764596|sp|A8FBR0|ADDB_BACP2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB Length = 1169 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 114/1075 (10%), Positives = 282/1075 (26%), Gaps = 153/1075 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81 A+L + E R DPL P + VP + + L E + + I + S Sbjct: 16 TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 68 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + + R + I + K+ + KD + + Sbjct: 69 TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLA--ADFLKIASKYW 195 ++ + + + + E++ + E +Y A L + + Sbjct: 113 ASDKPGFVEQIEKTMAEFKRYCMLPEEIEKISVESMLSEYTEERRAAEKLHDLHVLYQQM 172 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L + + L+ + + I I G P ++ + H Sbjct: 173 EEHLQDEYVH--SEDYLNLLAQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLHAAK 230 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 +D N + + + L +L + Sbjct: 231 VTAAFTVDQSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISETIF--- 278 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R+ + ++ Q+ + + ++ ++R E +A Sbjct: 279 ------ERNHRHLYTPDLAYLEHQYEQRPVQP----YQENTPHLTVSKSASKRAEIEGVA 328 Query: 376 IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431 + + E + +++ + + + I I + ++ Sbjct: 329 RDILDLVREKGLRLRDISVVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 388 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 S L+ I + A+ VK + + LE + + Sbjct: 389 SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 448 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 R + + + + + ++ + + Q L + ++ Sbjct: 449 FHYRRFQSLDEDFRQTDQEIEMEQMLNDVKEWITPPLYQLQKRLKNAQKVRDMVEAVYVF 508 Query: 551 SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ + + R + + + L + ++ + + + + Sbjct: 509 LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 568 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 I + +FI SR+ + + G+N+GV P + LS Sbjct: 569 IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCMFIIGVNDGVIPARPSDESVLSEDD 628 Query: 669 Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719 + ++L E+ + + ++ + + HL + + + + S ++ Sbjct: 629 REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYC 688 Query: 720 LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742 L + + G + + Sbjct: 689 QELMPNHQQALYVLDPELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 748 Query: 743 RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + + +P L S S +++ ++ +A Sbjct: 749 YLMTSPNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 808 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837 LKL + D G LFH+ + + + + H ++Q Sbjct: 809 HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 866 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + ++ L + + KI + E S + + + Sbjct: 867 LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKVSGFSPVGLELGFGGQGPLPP 926 Query: 896 IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940 L G DR+D G + I DYK+ + + Q+ Sbjct: 927 FTFQLKNGCTMELVGRIDRVDK-AEGSKGLFLRIVDYKSSEKGLDLAEVYYGLALQMLTY 985 Query: 941 AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 S + A + Y + F I + + + + +K L Sbjct: 986 LDLTITYSKEWLGIEATPAGILYFHIHDPFIQAPIPLAEDEIEQEIFKKFKMKGL 1040 >gi|157691775|ref|YP_001486237.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus SAFR-032] gi|157680533|gb|ABV61677.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus SAFR-032] Length = 1173 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 114/1075 (10%), Positives = 282/1075 (26%), Gaps = 153/1075 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81 A+L + E R DPL P + VP + + L E + + I + S Sbjct: 20 TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 72 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + + R + I + K+ + KD + + Sbjct: 73 TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 116 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLA--ADFLKIASKYW 195 ++ + + + + E++ + E +Y A L + + Sbjct: 117 ASDKPGFVEQIEKTMAEFKRYCMLPEEIEKISVESMLSEYTEERRAAEKLHDLHVLYQQM 176 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L + + L+ + + I I G P ++ + H Sbjct: 177 EEHLQDEYVH--SEDYLNLLAQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLHAAK 234 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 +D N + + + L +L + Sbjct: 235 VTAAFTVDQSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISETIF--- 282 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R+ + ++ Q+ + + ++ ++R E +A Sbjct: 283 ------ERNHRHLYTPDLAYLEHQYEQRPVQP----YQENTPHLTVSKSASKRAEIEGVA 332 Query: 376 IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431 + + E + +++ + + + I I + ++ Sbjct: 333 RDILDLVREKGLRLRDISVVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 392 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 S L+ I + A+ VK + + LE + + Sbjct: 393 SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 452 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 R + + + + + ++ + + Q L + ++ Sbjct: 453 FHYRRFQSLDEDFRQTDQEIEMEQMLNDVKEWITPPLYQLQKRLKNAQKVRDMVEAVYVF 512 Query: 551 SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ + + R + + + L + ++ + + + + Sbjct: 513 LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 572 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 I + +FI SR+ + + G+N+GV P + LS Sbjct: 573 IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCMFIIGVNDGVIPARPSDESVLSEDD 632 Query: 669 Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719 + ++L E+ + + ++ + + HL + + + + S ++ Sbjct: 633 REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYC 692 Query: 720 LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742 L + + G + + Sbjct: 693 QELMPNHQQALYVLDPELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 752 Query: 743 RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + + +P L S S +++ ++ +A Sbjct: 753 YLMTSPNRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 812 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837 LKL + D G LFH+ + + + + H ++Q Sbjct: 813 HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 870 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + ++ L + + KI + E S + + + Sbjct: 871 LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKVSGFSPVGLELGFGGQGPLPP 930 Query: 896 IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940 L G DR+D G + I DYK+ + + Q+ Sbjct: 931 FTFQLKNGCTMELVGRIDRVDK-AEGSKGLFLRIVDYKSSEKGLDLAEVYYGLALQMLTY 989 Query: 941 AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 S + A + Y + F I + + + + +K L Sbjct: 990 LDLTITYSKEWLGIEATPAGILYFHIHDPFIQAPIPLAEDEIEQEIFKKFKMKGL 1044 >gi|225174782|ref|ZP_03728780.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1] gi|225169909|gb|EEG78705.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1] Length = 1147 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 128/1009 (12%), Positives = 261/1009 (25%), Gaps = 139/1009 (13%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E ++ G + + S + + L P +S + R + L RL+ + + Sbjct: 50 ELAQMCGGGTFRA-QVLSFRRLAYHLLQSKG----GLPPVMSELGRQMVLRRLLQESQAE 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + A + LA I + E L L Sbjct: 105 LTIFGR-------------AAQQPRFCEQLAVQIRELNNYLVSPEMLKNQAASPETGEAL 151 Query: 183 LA-ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + L + + P L A E + + G G P Sbjct: 152 RSKLSDLSTVFAAYRTFTA-GSFMDPEDTLAILAAAVEEG-ALPAGTRVWVDGFAGFTPQ 209 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +++S + + V LD I + + T T+ Q L +L+ Sbjct: 210 EFQVLSALFSTAEHVEVALCLDP-------RHIPAQPQEDELFHPTLETYLQ--LRRLVG 260 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + ++L + F + + + + + ++ L Sbjct: 261 EAGVPALPPEQLPLDEKQTR---------FAHSEALQVLEAGFGRLPVESYPREAEEIRL 311 Query: 362 IEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRVKLELTRFGINIDISA 417 + A R E ++A + + E + +I D + V + I + Sbjct: 312 VTAAGTRAEVEAVACDILHLVREKGWRFRDIGMILRDFSRYHDLVAAIFQEYQIPFFVDE 371 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 + L S L+A + L+K L + LE A Sbjct: 372 RRSATHHPLVEFLRSALDAAQANFALEPVLQLLKTDLLPIS------RETADKLENYARA 425 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 +D K + + EE E + + Sbjct: 426 HGIRGSRWLDGKPWSFRLRLSLDESRDTATETDAHLEEINEGKTVFGRIFTPFNRQVGGS 485 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 C + + LQN ++ + + L +I+ T Sbjct: 486 ARPAADFCRAIWALLESTDAELQLQNWSEEDANPATAAQHRQVWSGVVELLEQIVSTLGE 545 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + E+ I+ ++ T+ + + SR + GL+EG +P Sbjct: 546 RQISLQEFSQILQAGLEALTLGLVPAGLDQVIVGSVERSRQPRLRAAYVLGLSEGDFPAR 605 Query: 658 TAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 + L+ + DL + +K + + + L + L + Sbjct: 606 LKEEGLLADEEREALQENGVDLAVTKRQKLFHEQYLSYIALTRSSEYLWVSCPLADEEGK 665 Query: 710 T-IASRWLQRLLVLGGTDFFD---NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 S RL + N + + Sbjct: 666 AKRPSALFNRLRETFPYNDVHFFGNTPDSKEDLHALAGAEKSAAALLLQAGGVAAGGAMS 725 Query: 766 QPRTY----------------------------------------------SFSEIKQLI 779 S S ++Q Sbjct: 726 DFWAAAYNEALSIPQVYNRMRMLWPSLTERNHIAPLPAETVLEILGTELKSSVSRLEQFA 785 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EIN 832 P+A +AR +L+L F+ + + G FH+ + + + E Sbjct: 786 RCPFAHFARYVLRLQERHEFR--VEAPEMGNFFHHALRLFAESLQAEGLDWAQLETEEAQ 843 Query: 833 HLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIP 886 M I++ + L + + E +S + + V + Sbjct: 844 ARMNSIVEELIPRLQGEILLSSARMRYLAERLKETLAQAVAALTEHARRSQFKTVAVEMS 903 Query: 887 AK--------MAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP---KKETAQKL 932 + + L G DRIDL ++ + + DYK+ P K Sbjct: 904 FGSGKTPAWQLRCGQTQLKLYGQIDRIDLAEAEGKAWLRVIDYKS--TPIELKLSDVWHG 961 Query: 933 IDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL A +K + + + A Y + + ++ + Sbjct: 962 LSLQLLAYLAVVKENARAFSALPAESAGALYFGIHKPYERLDNPPPEAV 1010 >gi|309782348|ref|ZP_07677074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gi|308918884|gb|EFP64555.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 947 Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats. Identities = 161/1044 (15%), Positives = 303/1044 (29%), Gaps = 125/1044 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEI 67 AP F A +R+ + + TI VPT I +R Sbjct: 5 AFAPGPAFLSRAADA--------AWRFLDAHAQSPGTATIVVPTAAQIPGVRGALHASAQ 56 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 +LP I +LG + DL + + RLL + + + Sbjct: 57 AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKT--------- 102 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 A +A+ L + D + + H+ + + A+ Sbjct: 103 --QAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAAHSGADGRADELESALAEA 160 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L+ +L E + + R + G+ IP R M Sbjct: 161 LERTY----AQLSERFLGTESRIVLTFWRLLS--------------GAADPIPMRLRAMQ 202 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + G IV + S P Sbjct: 203 RLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSIGYDWNAP--------------- 247 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + ++ L + + Q + + A Sbjct: 248 -------ESGASAAPSTHADFRNLLLHAWPECATPAQAADDAAAAQLPAPILRIAGAARF 300 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +EA A L L+ ++ AL+ DR +ARRV+ L R + + G LSTT + Sbjct: 301 EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 360 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L ++ + D A+ L+K P + A A +R + S Sbjct: 361 AALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR 420 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L+ LV DR A+ + + A L G+ Sbjct: 421 LRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRA-------------------GS 461 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ W L L + + + + + S T + + + EW Sbjct: 462 ATLDAWVTLLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARFSLTEWRA 521 Query: 608 IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ L++ + + IL +R+ FD +++ G ++ P + F S Sbjct: 522 LLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 581 Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724 ++ +L L + Q A D + ++ T P S WL+RL Sbjct: 582 DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRL- 640 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 ++ L + T P P P T S + L PY Sbjct: 641 --AVSGVRIDTSVTLPSLQTTSQPTDMPAPAAPTLVP------STLSAAAYNSLRRCPYQ 692 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841 + R+L+L + + ++ D G + H I+ ++ + + + L++ I D Sbjct: 693 FFVGRMLRLGELEEVSDELEKRDIGEILHAILHRFHRQLLETPMHDPADRLSLLQTITDE 752 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI---ESIGIH 897 F + + + + S+L + ++ + +I + + Sbjct: 753 QFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLPDERALR 812 Query: 898 LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 L G DRID+ V + DYKT + D QL + Sbjct: 813 LRGRIDRIDVHDEHGVAVLDYKTQSQMALVRRAKTPFEDCQLPFY----------GVLDA 862 Query: 956 KVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + + ++ L + + D L E+ K++ + Sbjct: 863 RADSGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALAAGAPLPAFG------ 916 Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037 E + L R W E Sbjct: 917 -DESACRYCAARGLCRKGYWTEGA 939 >gi|228990220|ref|ZP_04150189.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM 12442] gi|228769503|gb|EEM18097.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM 12442] Length = 1176 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 127/1016 (12%), Positives = 273/1016 (26%), Gaps = 155/1016 (15%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + I G ++I + S + + S + + L +++ + Sbjct: 54 QQALIGNEGVSASIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVEARK 110 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 L + A ++L +I + +++ + + Sbjct: 111 EGL-------------YVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 157 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + L+ Y L+ + I I Sbjct: 158 SGDEQKLLANKMYDLQLLYDDFERALIGKYL-DSEDYLQLLVEKLPDSDY-VKGAEIYID 215 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D + + + Sbjct: 216 GFHSFSPGELEIIRQLMICGARITITLTVDEKTLSQPTSELD------------------ 257 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L + E VK+L ++ + + + E++ Sbjct: 258 -----LFYQTVLTYEKVKQLAREEKIAVESTISMREQPRFLSPALAHLEAEFESRPSKKF 312 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRF 409 + D+ L A N R E +A +R + + + ++ + + +K T + Sbjct: 313 QSEPDITLYTAANLRAEVEGVAREIRRLVAEEEYRYRDITVLLRNGESYYDVMKTLFTDY 372 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAK 468 I I P+S + S L I + AI +K L K + Sbjct: 373 DIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDAIFRCIKTELLYPLDVRKESMHEEM 432 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--- 525 + E L + R + + R EE +V Sbjct: 433 DEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNGMQTDSEREMEEKINRLRDVVRTPI 492 Query: 526 -HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + + + L D K E L ++ + + Sbjct: 493 IRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDLRMR-AEAEGNFLFASDHDQVWEEV 551 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 +L +E K + +ID++T ++ + I SRL + Sbjct: 552 MNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSDIRAA 611 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGTRH- 696 + G NEG+ P + LS + +L T + + + ++ Sbjct: 612 FVIGANEGIIPAAPSDEGMLSDEEREFLVTAGVELAPTTRQTLLEEQFVIYQTVTRASEK 671 Query: 697 LIYTRSLREN-NIPTIASRW---------------------------------------- 715 L + L + ++S + Sbjct: 672 LYISCPLADEEGKTLLSSSFIKKVKRMFPSVKEVFVTNDVNDLSRQVQISYVATPEVTLS 731 Query: 716 --------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------P 761 +R G DF+ ++ +W +K Y+ Sbjct: 732 YVTQQLQNWKRYGFEGNLDFWWDVYNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSR 791 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 L S S ++ YA +A+ L L F D D G LFH + ++ Sbjct: 792 DLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIAD 849 Query: 822 KRI--NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKIS--HSFL 868 K + N+ +++ + + + +E P I +I S + Sbjct: 850 KLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLI 909 Query: 869 EHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-V 913 E S + + +P M ++ + L G DR+D ++G + Sbjct: 910 LREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFL 969 Query: 914 DITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 I DYK+ + Q+ + + + + A + Y + Sbjct: 970 RIIDYKSSTKALDLTEVYYGLALQMLTYLDVVISNANTWMKKDGTASPAGVLYFHI 1025 >gi|305679906|ref|ZP_07402716.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266] gi|305660526|gb|EFM50023.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266] Length = 1079 Score = 205 bits (522), Expect = 3e-50, Method: Composition-based stats. Identities = 122/1050 (11%), Positives = 281/1050 (26%), Gaps = 146/1050 (13%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLG 82 + L++ + I +K+A LR + KS +++S+ Sbjct: 71 VTSLLLDTVARRIEAGEDPERILIVAASKQAASRLRRGIVARVATSHYKSAGT-MVRSVH 129 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L ++ ++ + L+ + ++ P+ P+++ Sbjct: 130 SLAFALLRRMRDEKLRL---ITGAEQDAVIRELLQGHSELTGEGQQEQGPQVPITIWPEE 186 Query: 143 AN----AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + A+ L D + EDL L E + W+ A FL+ + + Sbjct: 187 CRDGIVMVGFARGLRDFLLRTVERGLGPEDLERLGEEHHRPMWVAAGKFLRE----YEQV 242 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + S ++ M E + + + +I+ + P +A L++ + N A++ Sbjct: 243 MSLGGTHSLSASELVSMALEHDVPPEISYSTVIVDDAQHLDPKSAELVARFIDQANFAVI 302 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + + H Y + Sbjct: 303 --AGDPDQSVFRFRGARPQFLQHHPVDHELRLHTSYRVQA-------------------- 340 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + + A I Sbjct: 341 ------------------------RPGAPGVHFHRADSTGNMFEFVADRIRRARLI---- 372 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAI 437 D + A++ + ++ L G+ + I I LS S L + A+ Sbjct: 373 ---DDVQWRDIAVVVRSVGMITPIRRALLAAGVPVHIDPTDIVLSQQRIVSALILAVRAV 429 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + L P+ + G + + + Sbjct: 430 HHGLTLAELEELALGPIGGADAVTLRRLLRGLRQVELRRTGAVAAAFQTPTRRSLEVLSE 489 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 P + + + + ++ I Q I + + S ++ K Sbjct: 490 LVLEPEPDPGLVAEVEQVLTDREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHL 549 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + +L + + + + I + + Sbjct: 550 SAVSMRGGAAGSQADRDLDAVMALFDAAGDWVERRPNSTIDAF----ITHIEEQELPTGV 605 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672 ++ + I+ + + T+I+ G+ E WP + + DL Sbjct: 606 RDRRLVVPDAVNIVTAHATSGQEWHTVIICGVQEDSWPSLSETGTLFGQEELVDLIDDGI 665 Query: 673 ----NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGT 725 + + + + F MA + + ++ + + P SR+++ + Sbjct: 666 APGTTIARVTEQLREERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSP 725 Query: 726 DFFDNLKKR--------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + ++R L +TR L +R P + R + ++ + Sbjct: 726 EDPWEPQERVVGEQQIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLAR 785 Query: 778 LI------NDPYAVY--------------------------ARRILKLDFIPHFKKDPDR 805 L P + + I ++ Sbjct: 786 LAEAGVPGAHPDQWWGIAGPSTTRSLPVSSLSPSRIEAGMACPLRATMSRIFTEEELVFP 845 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RG L H + +N ++ + + + Sbjct: 846 LLRGRLLHAFAEAVA---LNVDSDVARLKIMDAYQEILAAPIWLRSHRLDTW---RTVLD 899 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-P 924 E + E++ V + A++ I G+ L G DR++ G I D+K+G N P Sbjct: 900 RTKMWIETHRHIFEQVGVEVEAEVTIA-EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNHP 958 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQID---------CRKVANLFYIRLKQKFKIDCIT 975 ++T I QL L G F V + + I Sbjct: 959 SEKTIADHI--QLLTYQLILHHGVFDGTKIRTARSTESGMTVDGATLVY--PEKDTKNIW 1014 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + + +E + L +++ L+ E Sbjct: 1015 SITQAAKTEEQLAEFEDQLPDLLQALRGPE 1044 >gi|187928126|ref|YP_001898613.1| hypothetical protein Rpic_1033 [Ralstonia pickettii 12J] gi|187725016|gb|ACD26181.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 951 Score = 205 bits (522), Expect = 3e-50, Method: Composition-based stats. Identities = 159/1051 (15%), Positives = 314/1051 (29%), Gaps = 135/1051 (12%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--I 67 AP F A +R+ + + TI VPT I +RS Sbjct: 5 AFAPGPAFLSRAADA--------AWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQ 56 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI--LIWRNKLPD 125 +LP I +LG + DL + + RLL + + + W + Sbjct: 57 AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKTQAWLREALG 111 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLA 184 D + ++ ++ L++ + +++ + L AL + L+ Sbjct: 112 AQDDAALWGVAQVLVTVSD--ELSQRWLTLDAAHSGADRRPDALESALAEALERTYAQLS 169 Query: 185 ADFL----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 FL +I +W A+ P+ ++ MR + L GPI+ + Sbjct: 170 ERFLGTESRIVLTFWRLL---SGAADPIPMRLRAMRRLLDEL----HGPIVWMSPSDPEA 222 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + A + WN ++ S++ + ++ Sbjct: 223 VDLDFLQRAAERVPVLSI---------GYDWNAPEAGTSATPSTHADFRDLLLHA----- 268 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + + + + + Sbjct: 269 -----------------------------------WPECATAAQAADDGADARMQAPILR 293 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A +EA A L L+ ++ AL+ DR +ARRV+ L R + + G Sbjct: 294 IAGATRFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWK 353 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 LSTT ++ L ++ + D A+ LVK P + A A +R + Sbjct: 354 LSTTRAAAALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHN 413 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 S L+ LV DR A + + + + + Sbjct: 414 VSGGWGRLRRLVADRPANDADADADGEAKVSRLADRLGVLAD---------------EAA 458 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 G+ ++ W L L + + + + + S T + + Sbjct: 459 LWRRVGSATLDAWVTLLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARF 518 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + EW +++ L++ + + IL +R+ FD +++ G ++ P Sbjct: 519 SLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQP 578 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQ 717 + F S ++ +L L + Q A D + ++ T P S WL+ Sbjct: 579 EWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLE 638 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 RL L T + P T S + Sbjct: 639 RLQRRLAVCGVRIDTSVVLPSLQTTSQ---------PAGMPAPAAPVLVPSTLSAAAYNS 689 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHL 834 L PY + R+L+L + + ++ D G + H I+ ++ + + + L Sbjct: 690 LRRCPYQFFVGRMLRLGELEEVSDELEKRDIGEILHAILHRFHRQLLEVPMHDPADRQAL 749 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI-- 891 ++ I D F + + + + S+L + ++ + +I Sbjct: 750 LQAITDEQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITL 809 Query: 892 -ESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGS 948 + + L G DRID+ V + DYKT + D QL Sbjct: 810 RDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMVLVRRAKAPFEDCQLPFY-------- 861 Query: 949 FSQIDCRKVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + + ++ L + + D L E+ K++ + Sbjct: 862 --GVLDARAVAGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALSAGAPLPAF 919 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 E + L R W + Sbjct: 920 G-------DESACRYCAARGLCRKGYWTDGA 943 >gi|299140512|ref|ZP_07033650.1| conserved hypothetical protein [Prevotella oris C735] gi|298577478|gb|EFI49346.1| conserved hypothetical protein [Prevotella oris C735] Length = 923 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 76/520 (14%), Positives = 160/520 (30%), Gaps = 55/520 (10%) Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + N + TL + +I T ++A+ + +I +L Sbjct: 414 IVDILQEVGHNYTAEGEEDPFVQESIFRMYTLFNRLEALI-TAGDLEADFNIYNRLINQL 472 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 I +V E L I+G LE+R L+FD +++ NEG PK F+ ++ Sbjct: 473 ISSTSVPFHGEPVIGLQIMGVLETRNLDFDHILILSCNEGNMPKGVNDTSFIPYAIRKAF 532 Query: 673 NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDN 730 L T + + A+ F + + + + T SR++ +++V Sbjct: 533 GLTTIDNKVAIYAYYFHSLLQRAQDITLAYNKATSKTATGEMSRFMLQMMVESQQKIQFR 592 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 Q + + + + S + + + Y R + Sbjct: 593 NLNAQQVPMQ--------NIKKAIVKNPKVMEVINSIERISPTALTTYLRCQMRFYYRYV 644 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH---LMKQIIDS 841 + + + + D G +FH + + + L+ ++++ Sbjct: 645 AGIKEPDNEEDEIDNRIFGNIFHRAAELFYQDKNHGGIIHESDIEDALKDKSLLTRLVER 704 Query: 842 HFEKENLPP---------HIDIIWRHLFHKISHSFLEHEEKIQSS---IEKIFVNIPAKM 889 F ++ + +I R + L+ ++K+ + V ++ Sbjct: 705 AFREKLFEVNETRDIKYNGLQLINRQVIIDYLKRLLQIDQKLTPFSILGLEESVEKAFEI 764 Query: 890 AIESIG--IHLTGFADRIDLLKSGF---VDITDYKTGDNPK-----------KETAQKLI 933 I+L G DRID ++ + + DYKTG N E Sbjct: 765 DTPQGPKQIYLFGNIDRIDEIQDNHGAFIRVVDYKTGSNNSMNVKNIDDIFNPEKIDNHT 824 Query: 934 D--PQLSLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITN--DKKKYSADELSE 988 D Q L + L+ V+ L +I+ D + Sbjct: 825 DYYLQAILYSLILRNEHPINAANHPVSPALLFIQHATGKDYDPTLQLDKQPITDVANYQS 884 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + L ++ + N + F K Y ++ Sbjct: 885 EFMDRLKVLIEDIFNPDISFD--PTEKTKQCQYCPYRNIC 922 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 61/468 (13%), Positives = 132/468 (28%), Gaps = 98/468 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + + +L+ L+ VTI P KRA L E + P Sbjct: 4 FLQYVAEDILHKNGTN-----------LSRVTIVFPNKRASLFLNEELAR-MANRPIWSP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKD 129 ++ ++ E ++ L + ++ ++ E W L D Sbjct: 52 TYITISELFREHSDKTVVDQIKL---ICDLHKIFNACTGSCETLDHFYGWGQVLLTDFDD 108 Query: 130 LYPESP--------LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 + L +A +L + +++ +D+ + E++ W Sbjct: 109 IDKNMGDAHQIFTNLKNIHELDDASYLTEEQKELLKKF--FGNFSDDIESKLKERFINLW 166 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + + E L + + ++ + + I G Sbjct: 167 SN----FEEIYTRFNECLAQQGLAYEGALYREVVE---KTEIDFQNDNYIFVGFNMMQIV 219 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +L + A D + N T+ + L + Sbjct: 220 EQKLCERLQKLGK-AHFYWDFDDYY-----------MKNQYGIKHEAGTYIRQYLKYFPN 267 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 LDI + + + ++ Sbjct: 268 ELDITNKQIYAN---------------------------------------FEQPKNITY 288 Query: 362 IEADNEREEAISIAIALRMSLD-ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A E +A I+ L+ + ++ +++A++ AD NL V L +++I+ G P Sbjct: 289 LSATTENIQARYISTWLKQNGRIDDGRRTAIVLADENLLPTVIHCLPPELKHVNITTGYP 348 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMA-------IATLVKHPLAKFGFPE 461 L +S + L+N L++HP K+ + Sbjct: 349 LQHAPIASFVRLLINLHTMGYSANRHSFSKKWRTMLMRHPYMKYIENQ 396 >gi|220934454|ref|YP_002513353.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio sp. HL-EbGR7] gi|219995764|gb|ACL72366.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio sp. HL-EbGR7] Length = 958 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 143/909 (15%), Positives = 277/909 (30%), Gaps = 120/909 (13%) Query: 69 GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128 G ++ + P I SL V E+ + P + + R L L + Sbjct: 65 GVEALLGPRITSLRQWVMEQ------DPAHGAPLLGDHGRELMLFEALREHPQLFERH-- 116 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW------- 181 + L L ++ + + ++ + Sbjct: 117 ---------------DTWRLVDTLLELFRELTLSGATPPAAYEAFVQRLREAYGLGGDDS 161 Query: 182 ---LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTG 237 +I W L + +RA A G + AG Sbjct: 162 ACLEPLGREARIVHTLWHAWLEQQRQEGREDPDARYLRALACLEPGNIPPGSLYAAGYDE 221 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 +PA L++ + ++ + T+ PQ + Sbjct: 222 LLPAETALLNGLTREGRLHWLV---------------GLPAAPGMPQPTSDGADPQTPFS 266 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 LD ++ R ++ + P Sbjct: 267 AFLDQ-----------AFDTDGAPLRERALAFAQRHPS-----------------SPATP 298 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +AL+ A++ +A ++ I +R L E + ++T DR LARR++ L R GI++D Sbjct: 299 RLALLGAEDAEAQAAALDIRIRAWLLEGHRHIGVVTDDRRLARRLRALLERAGIDLDDPG 358 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G LSTT ++ L L A+ + ++ + ++K P E++L + V LR Sbjct: 359 GWALSTTRAAAALERWLEALEEDFEYQPLMDVLKSPFVFPERTEEHLFAVYRLEQDVMLR 418 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 N ++L R K + R + L L + Sbjct: 419 ENIP-------RNLARMREHLFKRARRLGPASERSTRAVASLLDALEE---------AAV 462 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 DW L+ + +L + G+ L + Sbjct: 463 PFRGLVRGAARPAGDWLAALQESLRRLG-----MQASLEADPAGRRLLEEVRAMAADLGS 517 Query: 598 IK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + E+ + R+++ +P + + ++ E+ L FD LI+ + P Sbjct: 518 RPLSMDWREFRTWLGRVLETRHFRPHPRPAP-VRLMSLGETALARFDALIIAAADGEHLP 576 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASR 714 + + ++ L L+ + + F ++ T P + Sbjct: 577 GHEPVRALFNDGVRHALGLEAWHDRVARQQGRFRRLLEAAPRVLITWQRERGGGPQRPAP 636 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 W++ + + L+ + D +RP P P P Sbjct: 637 WVELIDAFHRLAWGAPLRDEALEAWLKTPDALVQSPDTAPLPATPQRPAPLLPAAHVPAK 696 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S + LI+ PY YA R L L + + D G H + P Sbjct: 697 LSASAHQDLIDCPYRFYAARGLGLAPPEELAEALSKADYGERVHLCLQAFHGGTPELPGP 756 Query: 830 -----------EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 E L++ I + FEK+ + W + + ++L+ + + Sbjct: 757 WQGPLDEAHRAEAQTLLETISKAVFEKDLEDNFMHRGWLARWRALIPAYLDWAIERAEAW 816 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 + + ++A+ + + L G DR+D ++G + DYKTG P ++ QL Sbjct: 817 QVQDTEVSREVALATGTV-LKGRLDRVDAGEAGQ-GVIDYKTGTPPAQKEVDAGEAVQLP 874 Query: 939 LEAAALKAG 947 A L+ Sbjct: 875 TYALLLEDS 883 >gi|163839981|ref|YP_001624386.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953457|gb|ABY22972.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 1073 Score = 205 bits (521), Expect = 4e-50, Method: Composition-based stats. Identities = 115/1019 (11%), Positives = 237/1019 (23%), Gaps = 115/1019 (11%) Query: 34 FRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL 93 R + + A V + P++ A LR + + P +S + Sbjct: 60 VRRVNHDDVDPAKVLLLAPSRVAAARLRDALSARLDRTVSTSP-ARSWASYAFDILRRAQ 118 Query: 94 LLSY-----NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + +S ++ L + L+ L Sbjct: 119 AEGLVPNADRVPKLISGPEQDLFIRELLAGHALGLAP------GPQWPEELHEALLTRGF 172 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + + + D I DL L E W AA + L P Sbjct: 173 RQEVRQLFDRIVDNGLLPSDLVELGRENNRPDWQAAAQLYREYRDL--IELKNPGCYDPA 230 Query: 209 ---GYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 L A + L + + I++ + A L+ + G +L Sbjct: 231 GIVRAASELFDANPDWLARERERHSLILVDDLQETGRAVHGLLRRIGT---GQEMLATAC 287 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + S +L L Sbjct: 288 PDTVVQGFRGARPDRVGLVRDELGANEAVLSSSHRLNQPLAAAW---------------- 331 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL- 382 + + R D ++ + V+ + ++ ++ +A + Sbjct: 332 LRIAERIAQSKGGHKARQLDFPADEPTVGPESEQVVSGVVVGSDVQQRRFVAERIMHFHV 391 Query: 383 --DENKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFK 439 + + A+I L GI + ISA P+ L Sbjct: 392 DRERPLRDMAVIVRTGAQVAAFGRYLVSHGIPVRISAAETPVRDEPAVRPLLLAYRVAVT 451 Query: 440 L--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D L+ + + R L N +L L R A Sbjct: 452 PELLDAELAVDLLTSRIGGLSSVQI---RRVRKLLRAEEIANGGVRGSDELLVEGLQRPA 508 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 +R++ + + + + L + + Sbjct: 509 QLAALGVDGRAAARMATVLAAGSQAMTEPGANPQSVLWALWDATGLST---------EWA 559 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L+ + + ++ + + +T Sbjct: 560 TAALREDANGSRADRDLDAMMALFQAAERYVEQSPAASPEAFVEY-----LLNQELPMDT 614 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + E + ++ + + +I+ GL EGVWP N + L ++ A Sbjct: 615 LAARAESGDAVEVMTPASAAGRQWPVVIVAGLQEGVWPNNRLRGELLGSQYLVEVLELGA 674 Query: 678 EKYIGQAAH-------------DFEMANGTRHLIYTRSLRENNIP--------------- 709 AA + + + + Sbjct: 675 ASARRLAAVQRMRDIRYDELRSFATAISRASERLICVGVSSEDEQPSGFLDLVDPWPIED 734 Query: 710 ---------TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + L+ L+ +R + R Sbjct: 735 NDGLRPLTDVRRPKTLRALVAELRQANERGANERDSDDRAEQPAAEAARVLAELARNAVP 794 Query: 761 PPLEAQPRTYSFSEIKQLIND--------PYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + + I P + A L + + D Sbjct: 795 GADPSSWWGLAPLSSTDPILPVDAVVPVSPSKIEAVHESALSWFLQAAGGEAQLDLARSL 854 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 +I + + N E+ + + EN ++ + Sbjct: 855 GTLIHGIAQDLPAGNAEELLAELANRWPALGLPENWETAAQ---LRRAERMLRKLAGYLR 911 Query: 873 KIQSSIEK-IFVNIPAKMAIESIGI-HLTGFADRIDLLKSGFVDITDYKTGD-NPKKETA 929 I + + + V + + I L G DR++L G + + D KTG P Sbjct: 912 LISAQGHELVGVEQGFGIEVPGARIAALKGIVDRLELTAEGTLIVVDLKTGKNKPTAAQV 971 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ++ PQL A K G+F QI V ++L + + Sbjct: 972 EQH--PQLGAYQVAAKHGAFEQIAPTASVGGAALVQLGDGTDKYDPQFQAPVDPEHDWA 1028 >gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] gi|119955618|gb|ABM12623.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] Length = 1038 Score = 205 bits (521), Expect = 4e-50, Method: Composition-based stats. Identities = 114/1043 (10%), Positives = 263/1043 (25%), Gaps = 113/1043 (10%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKR----AIQELRSEFIEITGKKSTILPIIKSLG 82 + LV+ SV + + R A + + + + + P+++++ Sbjct: 33 SSLLVDTAAAHIAAGCDPESVLLLTGSSRLSAQARAAITTALLGAGARSAVREPLVRTVH 92 Query: 83 DVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + + P +++ ++ + L+ D P Sbjct: 93 SYAFAVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVED-----GDASPVRWPERLRP 147 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + + A L D++ L + W A F + + Sbjct: 148 ALSTVGFATELRDLMARCSERGVDPLALQRIGRAAGRPEWQAAGRFAQAYEQ-------- 199 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 V A + A G + G+ AT + +++ Sbjct: 200 ------VMLLRAAVGMAAPQATVPALGAAELVGAALEAFATDADLLAAERARVQLLLVDD 253 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 P A + + + L L Sbjct: 254 AQHLDPQAARLVEVLATGAELAVIAGDPHQTVFGYRGADPALLRGEGPALTLTRSHRCAN 313 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + I ++ V + A + E+ IA ALR + Sbjct: 314 PVADAIGAVGRRLPGAEATREF-------TGSDAPGSVTVQIAASPHAESALIADALRRA 366 Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436 + + + ++ + + + LT G+ +D+ PL+ L ++L A Sbjct: 367 HLVDGVPWSQMAVIVRSVPRMGAALGRALTAAGVPLDLPQPEVPLAEQPAVRALLTVLEA 426 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 D LV P+ + R G + + L+ Sbjct: 427 TADGLDGERALALVTGPIGRVDPISLRQLRRALRRAAPESPGGFSDLLVDALQRDTPALA 486 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 Q + + +++ S K Sbjct: 487 DGQAR-----------------ALRRVCAVLTAARRSAREGSDPRHTLWQAWHRSGLQKR 529 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + + + +L ++ + + +D IT L Sbjct: 530 WLAASERGGPAGAQADRDLDAVTAMFDVAEQYVARTAGA-----SLRGLVDHITALALPP 584 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672 + + + +L + ++ ++L G+ EG+WP + + L+ D+ Sbjct: 585 ARRDEAAP-DAVALLSAHSALGHEWEFVVLAGVQEGLWPNVSPRGGVLATQQLVDVIDGV 643 Query: 673 ---NLKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTI--ASRWLQRLLVLG 723 T A ++ + R + ++ + S + L L Sbjct: 644 CAPGQHTLSSRAPLLAEEWRLLIAAMGRARSRLLVTAVDSDCGDDAMLPSSFCHELAALA 703 Query: 724 -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ--LIN 780 R L + + + Sbjct: 704 TEPQSQPAPPVRAPRVLAPSALVGRLRSVVCAAPGAVDDVERDCAAAQLARLAEAGVHGA 763 Query: 781 DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLM- 835 DP + Y R L + + L + L+++ ++ + Sbjct: 764 DPASWYGSRELSSAEPLWEDGEQVVTLSPSTLQMLSDCPLRWLLERHGGSRGRDVRSTLG 823 Query: 836 --------------------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + + + + R ++ +FL E + Sbjct: 824 SLVHALVSESGRTESQLLNGLEKVWEELPFDAQWYSDN--ERVRHLEMLSTFLRWREGTR 881 Query: 876 SSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + ++ I I + + L G DR++ G + + D KTG +P + Sbjct: 882 GELTEVGTEIEVDGQIAAPDGELPAVRLRGRLDRLERDSEGRLVVIDLKTGKSPVSKDDA 941 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + QL++ A+ AG + D L Y+ K T + + + Sbjct: 942 QSHA-QLAMYQLAVAAGLLADGDEPGGGRLVYL---GKTTGGGATERHQDALTPDGRAEW 997 Query: 991 LKNLIEIVTLLQNGEQPFISHLR 1013 + + Q + F + + Sbjct: 998 DEQVHRAAAATQGPQ--FTARVN 1018 >gi|317484426|ref|ZP_07943340.1| endonuclease [Bilophila wadsworthia 3_1_6] gi|316924314|gb|EFV45486.1| endonuclease [Bilophila wadsworthia 3_1_6] Length = 1110 Score = 205 bits (520), Expect = 4e-50, Method: Composition-based stats. Identities = 150/1133 (13%), Positives = 293/1133 (25%), Gaps = 152/1133 (13%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P + + F + ++ T + + + R + LR Sbjct: 2 TPSPPFRIVPWDTDFLDALKNGVMKATRGQP-----------GNAVVVFMHDRPRRYLRE 50 Query: 63 EFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F K ++P + + ++ L + ++ L+R + Sbjct: 51 RFRYAPDVPKPCLIPRMFTEREL---MAAFRQEQHQKLRREAGKLDQIALLSRCVRELAE 107 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 ++ L A LA++++ T+ ED+ + + Sbjct: 108 PDTELCMQLAKT-------DDAGFFPWGVRLAELLEECFTQGLTPEDMLY-TEGEVAPFG 159 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---------HLMKGTKGPIII 232 L + + L+E + ++P + A E I++ Sbjct: 160 AALLGSLGKIFHRYRDALIESDLTTPGFDAFVVASALEEGTDGDDLPPLPDFLAGRAILL 219 Query: 233 AGSTGSIPATARLMSTVANH-------------PNGAIVLPGLDCHIPTAIWNTITEKST 279 AG L + H NG + A W T + Sbjct: 220 AGFGMLTGTENTLFRYLWRHGAQVFLHVDPALAENGQGHWACTEQSNWIADWKADTVLAC 279 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---T 336 Y L LD L +++R ++ + RS S LP T Sbjct: 280 PSPGKKPKIHYFAGYDLHSQLDALRGDLIELERKDRLAAALKARSTTQQLSLLPSSENGT 339 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------- 387 + N S V R + Sbjct: 340 ASTLPETSASGNADNKDSITSKVLGGRGKGGPGGKGRGKPLFRRVPSPFPRWARPNPAPI 399 Query: 388 -----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-- 440 A+ A V L R + +IS G PL +L +L ++L A + Sbjct: 400 PTSQLDIAVALAHSGALLPVLHHLPR--KDCNISLGYPLERSLLFRLLETVLEARNRRQP 457 Query: 441 ---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + +A LV+HP + R LR D + Sbjct: 458 NGTTHWKTLADLVRHPYLRLLEANGISLRDIFQNMETRLRNGSRHADAHAV-------AE 510 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 ++ ++E + LL + + T + D + Sbjct: 511 GAADDFFAASSLPNVAEAMPAIRELLNRILRDTVDTWARVHTLGGLADALSGLCDTLLVY 570 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI-----DIITRL 612 + + F + + L L ++I ++ L Sbjct: 571 GSGNDEDGAGNGKADIWSRFPIDAECLFRLMQRVIPALKDNGMADTPLPWPLMQAMLLEL 630 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + E V + + + L +LG LE+RLL F + L + + P ++P L +++ L Sbjct: 631 VRAERVPFEADPLTGLQVLGMLETRLLRFSRVFLVDVTDDRLPGAPIRSPLLPDSLRALL 690 Query: 673 NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLREN-----NIPTIASRWLQRLLVLGGTD 726 L AA+ F + + SR ++ L+ Sbjct: 691 GLPDTRNREQLAAYTFHRLIAGADEVWLYWQEGVETSGLFDGKKQRSRLVEELIWQEEQA 750 Query: 727 FFDNLKKRGQCYLDWT---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 LK + R K + S + + + P Sbjct: 751 RGQRLKPGREPLRTAALDVRPPVRVRKVVPKTPAIREQIAASLKHPLSATRLDAYLTCPL 810 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN------------KNTPEI 831 Y R+ + I +D D G L HN++ + + + Sbjct: 811 RYYYERLCAIAPIDEVNEDDDPAAVGVLLHNVLRDFYAPAVGKTVRRDAQSGDPELPFLD 870 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAK 888 ++ + + + L + + L + Q ++ A+ Sbjct: 871 EKALRALFRTALDASGLEAALPPESAAMLSVTGPERLGMFLRAQPEQTEVLSLEEEYDAE 930 Query: 889 MAIESIGIHLTGFADRIDLLK--------SGFVDITDYKTGDNP---------------- 924 + + LTG DR+D + I DYKTG Sbjct: 931 IRVGGRIRRLTGNLDRVDWREQEDPEGAIDEGAVILDYKTGRIKALRPDIWADDAFWDAL 990 Query: 925 -KKETAQKLIDP-----------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 ++ A+ +P QL + Q + V + ++ L Sbjct: 991 DPEKAAEAASEPDPEHDFLPIMAQRIPTVQLLYYCYL-----YGQATGKPVLDAAFVALG 1045 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + + E + + LI + L F + Sbjct: 1046 EDGGERPLFGKGMTIEERERALSLIPRLIGFILLHMELCPEFRPREGAHCRWC 1098 >gi|283795556|ref|ZP_06344709.1| putative ATP-dependent nuclease [Clostridium sp. M62/1] gi|291077225|gb|EFE14589.1| putative ATP-dependent nuclease [Clostridium sp. M62/1] Length = 1184 Score = 205 bits (520), Expect = 4e-50, Method: Composition-based stats. Identities = 111/1009 (11%), Positives = 260/1009 (25%), Gaps = 140/1009 (13%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L+ + ++ + + L ++ + +L L Sbjct: 66 SFERLAYRIFEELAVETPAVLDDMGKSMVLRKVAAGRKKELRLFGSHLDKS--------- 116 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L ++ E L + + + + E + Sbjct: 117 ----GFIGELKSMMSEFFQYGITGEALKEMAEGTQSAMLRQKLSDMSELYEGFREYTKDR 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + + ++ + + G TG P RL+ + + V + Sbjct: 173 FIA--KEEILDILCRVIPRSELIKDSVVTLDGYTGFTPVQYRLLELLLTYCRQVTVTITM 230 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV------KRLGNV 316 + S+H L L R + Sbjct: 231 NPEENPY--------REKPIQHLFHLSSHTVCRLTDLAASSGAGRTEDILLKGDCPRFRE 282 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENK------IPNIQKCFSDVALIEADNEREE 370 S E+ + + + + + + + S + L +A+N E Sbjct: 283 SPELSKIERELFRYGRRGEQKEGKQEEGKRKEEKQNQTGCGAPHRKSGLILHQAENPIRE 342 Query: 371 AISIAIALRMSLDENK---KKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 + + + + + A++T A + + + + I + + + Sbjct: 343 IQFVCAQIERLVKKEGYRYRDIAVVTGALSDYSGELTRQFQENKIPCFLDSKKNILGNPM 402 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +L + + + + + ++ +K +A + LE Y Sbjct: 403 VELLRASMETLTEDFSYESVFRYLKTGMAVEDVEKLS------RLENYVKALGIRGYKRW 456 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + R N + ++ ++ + L + D Sbjct: 457 NSRWERVYRDGELLNLDELNEFREQIVAPFRPLREVFSDRSSSVREMTAALVHFLEEIHA 516 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + +W K + + + + LF ++ + E+ Sbjct: 517 EEKLGEWEKRFSEMGEA--------ELEKEYSQIYGLVMELFDRVAALLGDEVVSRREYA 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + V + +RL + L G+N+G+ P + L+ Sbjct: 569 QILDAGFEEIKVGLIPAVVDRVVAGDLTRTRLSHIKALFFVGVNDGIVPSAVRRGGILTE 628 Query: 667 VMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRENNIPTIASRWLQ 717 + L TA + + + L T S S + Sbjct: 629 AERRLLKEKGVELAPTAREEGFLERLYLYLVMTKPSDTLFLTWSQTSAAGKGLRPSSLIG 688 Query: 718 R---LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------ 768 + L D ++ R L ++ +P + Sbjct: 689 QVKSLFPELTETRSDEFEEAAWSLPAGRRALIGGLRERSASSSQPKFLELYRRFYTDSGY 748 Query: 769 ---------------------------------TYSFSEIKQLINDPYAVYARRILKLDF 795 S + +++ YA + L+L Sbjct: 749 REMTRRLVEASFCSYEDRGIGRTAAGRLYSPILRGSVTRMERYAACAYAHFLNFGLELRE 808 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN- 847 + + D G +FH+ I K + + L+ + + + + Sbjct: 809 RR--EYELAAADIGNMFHSSIDLFFKTMKEEGRSFRTLSPEDRKELVGRCVSAVTAEYGN 866 Query: 848 ---LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG 895 + +I+ + E+ + E + M I Sbjct: 867 TVVSASSRNEYLGRRVERITDRTVWALTEQLKKGDFEPAGFELTFTPADNLKAMKIPVSR 926 Query: 896 ---IHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948 +HL G DR+DL + V I DYKTG + + QL + A Sbjct: 927 TEAVHLQGRIDRMDLCEDEDKIYVKIIDYKTGQTKFELTELFYGLQMQLVVYLDAAMEKE 986 Query: 949 FSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + ++V A +FY + D + + +E E+ L+ L Sbjct: 987 QRKHPDKQVVPAGIFYYNIA-----DPMVEKSEDMDEEETQEEILRALR 1030 >gi|295095006|emb|CBK84097.1| ATP-dependent nuclease, subunit B [Coprococcus sp. ART55/1] Length = 1234 Score = 204 bits (518), Expect = 7e-50, Method: Composition-based stats. Identities = 101/913 (11%), Positives = 229/913 (25%), Gaps = 133/913 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + + ++ + + + A + +++ + + E + Sbjct: 116 MGFIDEMKSMMSELFQYAVDRDSIDAVMDKLDKDSLVYRKMHDIRLIYERFEE-YNRDGS 174 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 I L+ + + + G TG P L+ + + +D Sbjct: 175 YIVAEQLIELLAECVDRSDMLAHSHLYLDGFTGFTPVQMELIRKLMTRVESMTFVFTIDA 234 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 I Q + + ++ + + R Sbjct: 235 SQ-------IGFTKPKEYELFRLTKETVQALVR-------MAGDEHVDILDNVVMCQNRR 280 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + ++ + D+ ++ D +EA IA +R + + Sbjct: 281 PYRFE---KSMELAGLEANLFRYPHGRVAGDDGDIHVVAVDRAADEAEYIAGRIRELVRD 337 Query: 385 NK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 K A++ D +++AR + + + I + I A + L S + + L + Sbjct: 338 KGYRYKDIAVVAGDLQDVARYYRQAMDEYDIPVFIDANVSLKGDPCSDTIRAFLGVMTDN 397 Query: 441 NDFMAIATLVKHPLAKFGFPEKY------LSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 F ++ L+K + + L R + + Sbjct: 398 FSFDSVFRLLKSGMTGVDQDDIERMENYVLLRNLRGYRSWTKEITDDRNPDYAADMESIR 457 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + S K + + + L ++ Sbjct: 458 AQIMELFPDKCIDVWKPTSPGSKNTVRTYTESLYNFLAQLDVCGKLESHKKVLYE----- 512 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + R + + +LF K+ K E+ I+ I Sbjct: 513 -------------QERWDEGDAYGRIFDKVVALFEKMEAIIGDEKLTVKEYAGILDAGIA 559 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672 + + + SRL + L + G+NEG+ PK K LS + L Sbjct: 560 DMEIGIVPPTIDRVVVGDMTRSRLNHIKVLFMAGVNEGIIPKPAKKGRILSGADRQSLEN 619 Query: 673 ---NLKTAEKYIGQ--AAHDFEMANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGT 725 L ++K + + +I R + E+ S + R+ + Sbjct: 620 CGIELAPSDKTNAYIEQFYIYTTLTKASDMIYVLYRKIGEDLKSMKPSYLIDRIKNIFPD 679 Query: 726 DFFDNLKKRGQCYLDWTRKLD---------YTTKQPHYKR-------------------- 756 + GQ L + R Sbjct: 680 IRTEEYDVDGQMPETAAGALRYIIRHSDDVEAGETLDAVRKLLSKMGYGRQLRSINFGQN 739 Query: 757 ---------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 P + + S S++++ + + L L + Sbjct: 740 YVNSSKNLSPDTVRLIYGENLVESVSKLERYAECQFKYFLTYGLSLRERET--YRIGAAN 797 Query: 808 RGTLFHNIITE---LIKKRIN-----KNTPEINHLMKQIIDSHFEKENLP----PHIDII 855 G + H+ + + ++ + + E+ + + E E P Sbjct: 798 VGNILHSTMEKIFSFVRMFRDNDWVHLDEAELEQKAVKFANESAEDEAGPYFEDSSRAAY 857 Query: 856 WRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMA-----IE--------SIGIHLTG 900 + L ++ ++ + I+ + + L G Sbjct: 858 MKKLLADVASRTARTLRTFIRCGEMDPENFERRFNTSENADNIDRYIFNLPNGLTMSLKG 917 Query: 901 FADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAAL------KAGSFS 950 DRID + + I DYK+ + + QL A + Sbjct: 918 VIDRIDEFTDDRDAYFKIIDYKSSDKKLDIDKVLGGLQMQLVTYGAIACELEKRRMAQLG 977 Query: 951 QIDCRKVANLFYI 963 + V L Y Sbjct: 978 RPGGIHVGGLLYY 990 >gi|296332486|ref|ZP_06874947.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673767|ref|YP_003865439.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296150404|gb|EFG91292.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412011|gb|ADM37130.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 1166 Score = 204 bits (518), Expect = 8e-50, Method: Composition-based stats. Identities = 122/1040 (11%), Positives = 271/1040 (26%), Gaps = 149/1040 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + +S P +++ + L +LI Sbjct: 44 TFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTGGMSR---PFLTSTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE- 175 + + + ++ + ++ + + ED+ + Sbjct: 101 EEHKQE-------------FKVYQKASDKSGFTAQVERMLTEFKRYCLEPEDIRRMAESG 147 Query: 176 ---KYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 +Y +L+ L I + + L + + L+ I Sbjct: 148 TASEYRGERVLSEKLHDLSILYQQMEKSLADQYLH--SEDYLTLLAEHIPLAEDIKGAHI 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + + Sbjct: 206 YVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L++ + G + Sbjct: 260 ---YRLHQKAKELNLDITYKELSG-------------IERHTQTPELAHLEAQYEARPAI 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LEL 406 + +++A N R E IA + + E K A++ + + Sbjct: 304 PYAEKQEAFTVMQAANRRAELEGIAREIHTLVREKGYRYKDVAILARQPEDYKDMVKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 + I I + + S ++ + + A+ VK L P+ + Sbjct: 364 ADYEIPYFIDGKASMLNHPLIEFIRSSIDVLKGNWRYEAVFRCVKTELLFPLNEPKTKVR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + R + ++ + + + +V Sbjct: 424 EQVDQLENYCIAYGIKGDRWTKGDRFHYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--RKLPNLWFEEEGKT 583 + Q + KT + + T + + Q E R + ++ Sbjct: 484 PLFQFQKRMKKAKTVQEKAEALYRYLEETDVPLKLDQERQRAEEDGRIIEAQQHQQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + +E + + + ++ + T +F+ SR+ Sbjct: 544 VIQLLEEFVEMMGDDEISLDLFQQMMEAGAESLTFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L + + H MA + Sbjct: 604 TFVLGANDGVLPARPDENGVLSDDDREWLKTIGIELSSGGRERLLDEHFLIYMAFSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLD-------------- 740 L + + + T+ S ++RL L L + D Sbjct: 664 RLYVSYPIADAEGKTLLPSIVIKRLEELFPQHKERLLTNEPEQVSDEEQLMYVVNKSVAQ 723 Query: 741 ---------WTRKLDYTTKQ----------------------------PHYKRPKPFPPL 763 WTR+ D + L Sbjct: 724 SFTASQLRLWTREYDISDVWWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQL 783 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S ++ P++ +A L L F + D G LFH+ + + + Sbjct: 784 YGERIQGSVSRMETFNACPFSHFASHGLHLKERQFF--KLEAPDIGQLFHSSLKLISDRL 841 Query: 824 INKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEH 870 + + ++++ ++ L + + KI + Sbjct: 842 REQKMNWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILS 901 Query: 871 EEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITD 917 E S I + + K + + L G DR+D +S + I D Sbjct: 902 EHAKASGFVPIGLELGFGGKGPLPPLTFKLKNGCTMELVGRIDRVDKAESSKGLLLRIVD 961 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YK+ + Q+ ++ + A + Y + D + Sbjct: 962 YKSSDKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMRATPAGVLYFHI-----HDPMI 1016 Query: 976 NDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1017 QSNLPLGLDEIEQEIFKKFK 1036 >gi|194014167|ref|ZP_03052784.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061] gi|194013193|gb|EDW22758.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061] Length = 1169 Score = 204 bits (518), Expect = 8e-50, Method: Composition-based stats. Identities = 112/1075 (10%), Positives = 280/1075 (26%), Gaps = 153/1075 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSL 81 A+L + E R DPL P + VP + + L E + + I + S Sbjct: 16 TAILEE-IKEQLRLDPLGPP----IIFLVPDQ--MTFLMEYELAKTSEAGGMIRAKVFSF 68 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + + R + I + K+ + KD + + Sbjct: 69 TRLAWSILQQTGGAN-----------RQFVTSTGIQMLLRKVIEEQKDKFK-----VFKK 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALK----NEKYGMWWLLA--ADFLKIASKYW 195 ++ + + + + ED+ + + +Y A L + + Sbjct: 113 ASDKPGFVEQIEKTMAEFKRYCMLPEDIEKISASSMHSEYTEERRAAEKLHDLHVLYQQM 172 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + L + + L+ + + I I G P ++ + + Sbjct: 173 EQHLQDEYVH--SEDYLTLLSQQIPSAEEIKGAHIYIDGFYQFTPQQLLVIEQLLLYAAK 230 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 +D N + + + L +L + Sbjct: 231 ITAAFTVDRSYHDRQPNELDLFRMTGKTY---------FQLYQLAKECGADISENIF--- 278 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 R+ + ++ Q+ + + ++ N+R E +A Sbjct: 279 ------ERNHRHLYTPDLAYLEHQYEHRPVQP----YQENTPHLTVSKSANKRAEIEGVA 328 Query: 376 IALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431 + + E + +++ + + + I I + ++ Sbjct: 329 RDILDLVREKGLRLRDISIVARHVDDYKDTLKEVFRDYDIPFFIDGNESMQYHPLIELIR 388 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 S L+ I + A+ VK + + LE + + Sbjct: 389 SSLDVIKGNWRYEAVFRCVKTEFLFPLEITKNKAREQADQLENYCIAYGVKGERWTNGSR 448 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 R + + + + + ++ + + Q L + ++ Sbjct: 449 FHYRRFQSLDEDFGQTDQEIEMEQMLNDVKEWIASPLYQLQKRLKKAQKVRDMVEAVYVF 508 Query: 551 SDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ + + R + + + L + ++ + + + + Sbjct: 509 LEEIQVPDKLEKARLEAEEAGRLAEAMQHGQVWDAVIQLMDEFVDMLGDEELSFPLFQQM 568 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 I + +FI SR+ + G+N+GV P + LS Sbjct: 569 IDTGLASLKFALIPPSLDQVFIGSMDLSRMYQVKCTFIIGVNDGVIPARPSDESVLSEDD 628 Query: 669 Q-------SDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRE-NNIPTIASRWLQRL 719 + ++L E+ + + ++ + + HL + + + + S ++ Sbjct: 629 REWLKRAGAELAETGKERLLDEQFLIYQALSSPSHHLYLSYAASDAEGRSLLPSTLIKYC 688 Query: 720 LVLGG-------------------------------------TDFFDNLKKRGQCYLDWT 742 L + + G + + Sbjct: 689 QELMPNHQQALYVLDPEQLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYN 748 Query: 743 RKLDYTTKQ--------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + + +P L S S +++ ++ +A Sbjct: 749 YLMTSPHRDVSKNIMSSLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFAS 808 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-----------INHLMKQ 837 LKL + D G LFH+ + + + + H ++Q Sbjct: 809 HGLKLK--DRQFYKLEAPDIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQ 866 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + ++ L + + KI + E S + + + Sbjct: 867 LAPRLQKEILLSSNRHAYIKEKLQKILIRVSSILSEHAKLSGFSPVGLELGFGGQGPLPP 926 Query: 896 IH----------LTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE 940 L G DR+D G + I DYK+ + + Q+ Sbjct: 927 FTFQLKNGCTMELVGRIDRVDK-AEGSKGLLLRIVDYKSSEKGLDLAEVYYGLALQMLTY 985 Query: 941 AAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 S + A + Y + I + + + + +K L Sbjct: 986 LDLTITYSKEWLGVEATPAGILYFHIHDPLIQAPIPLAEDEIEQEIFKKFKMKGL 1040 >gi|329939646|ref|ZP_08288947.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] gi|329301216|gb|EGG45111.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] Length = 1158 Score = 204 bits (517), Expect = 9e-50, Method: Composition-based stats. Identities = 127/1097 (11%), Positives = 263/1097 (23%), Gaps = 143/1097 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + ++RA ELR G + P + Sbjct: 66 TLVESVAARIARGTDPERILVLTFSRRAAVELRDRLALRIG--AERAPRATTFHSFGYAL 123 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ L + Sbjct: 124 VRAHQDSGLFVEPLRLLSGPEQDVTVRGLLAGQPELER---LGLAHVRWPEDLRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L A WL A+ FL + V A Sbjct: 181 GFADEVRAVLARSRELGLDPAALEAFARRIGRPDWLAASAFLAEYLDVLDLQGVVDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G ++ D Sbjct: 241 VHRAVLLARRPEVAARLAAQYDAVYVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 298 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + V+ L Sbjct: 299 SIYAFRGADVGGILEFPDAFARADG--------------RPAPVRVLTASRRSGAALLAA 344 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + + ++ + V + E +IA LR + E Sbjct: 345 TRLLTRRMPLTRLPAEKVRAHRELTAAREGGRVEVRTYPTPGTELDNIADILRRAHLEDG 404 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFK-- 439 + + L+ A V+ LT G+ +D+ PL + L + L A+ + Sbjct: 405 VPWGEMAVLVRAGARGVPGVRRALTAAGVPLDVDGDDLPLRHEPAVAPLLTALRAVARAE 464 Query: 440 --------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE------------------- 472 D A + E ++ + Sbjct: 465 ATEGGAAEGPDAEDAAEEHDEHDERDEHDEHDERDERDERDEQDEQGGGDAHDGDDTKDD 524 Query: 473 ----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + + + + L R+ D LA Sbjct: 525 ANTGTADCWLDIETALALLASPLAGMDAADLRRLGRALREEERAAGSPVPPPSDALLARA 584 Query: 523 LVDHIL-------QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 L + + + + + + Sbjct: 585 LAEPERLVAHDPSYARGAQRLGALLRRTRECLADGGTAEEALWELWNGTPWPARLERSSR 644 Query: 576 WFEEEGKTLSSLFS---------KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 G+ E + +I + I +T+ + ++ Sbjct: 645 RGGAAGRNADRDLDAVCALFATAARAEERVGGRGALNFLEEIEAQDIAADTLTRRAVRAD 704 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685 + ++ S+ L + ++L G+ EG+WP + L L A Sbjct: 705 AVRLMTAHRSKGLEWHLVVLAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSQGALLAE 764 Query: 686 ---HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + A + L+ T + SR+L L V +R Sbjct: 765 ERRLFYVAATRAKERLVVTAVKAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVSAL 822 Query: 742 TRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQL 778 +L TT P P + +E K Sbjct: 823 VAELRATTVDPEASPALREAAARRLARLAALADEDGQPLVPSAHPYRWWGMFEPTESKVP 882 Query: 779 INDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + D A L + G + H ++ + + Sbjct: 883 LRDRDKPVALSGSALDQLARTCALQWFLGREVKADVPATAAQGFGNVVH-VLADEVASGR 941 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---KIQSSIEKI 881 E+ + + + FL+ ++ + Sbjct: 942 TPADLEVLMERLDSVWNALAFDAPWKSAQEKAHAR--AALERFLKWHVDSGGQRAGRTPV 999 Query: 882 FVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLS 938 + + + + + G DR++ G + D+KTG P + PQL+ Sbjct: 1000 ASEQDFDVTLGAGDYEVRIRGSMDRVETDGEGRAYVVDFKTGKQAPSAAEVARH--PQLA 1057 Query: 939 LEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KN 993 + A++ G+ ++ + + L+Q + K A E E + Sbjct: 1058 VYQLAVREGAVDEVFDGTRPEPGGAELVHLRQGAARRDGGEELPKVQAQEPLEGQWVGEL 1117 Query: 994 LIEIVTLLQNGEQPFIS 1010 L + + + Sbjct: 1118 LATAAGKVLDERFSPTA 1134 >gi|239947253|ref|ZP_04699006.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921529|gb|EER21553.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 908 Score = 204 bits (517), Expect = 1e-49, Method: Composition-based stats. Identities = 128/743 (17%), Positives = 250/743 (33%), Gaps = 97/743 (13%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P ++ + ++ +E N EEA IA K+ A+IT + L R L ++ Sbjct: 200 PASKQISNGISYLEPANIYEEARQIAYI---CSRNKDKRIAIITNNNKLKRVYCNFLDKY 256 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM-------------AIATLVKHPLAK 456 + G L T S +LTS++ + D I L + Sbjct: 257 EDLL----GNDLRLTNISELLTSIIKILCNNFDLKLLFLLLKNPLINCPIGQLNSQSFRQ 312 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA---TQKNNTHVPHWQSRLS 513 F K R + + + S + D + ++ ++ + Sbjct: 313 DEFKSKSAQRTIVREHRLNSKNSPVSSFVNDSVQKLELMLSNKNRFISSPKYLLQLQFDN 372 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E+ KE L+D + T +I D + + + Sbjct: 373 EDTKEYCRNLIDILF---------------TDNPHNIPDILIAAKGIAEKLLPTIWEEEG 417 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIK-----ANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E L++ S N ++ I + L+ K S+++ Sbjct: 418 GVELLEFLTNLTAYLSTSFPQKRESDKYINLTNKKDFPKIFSFLLSNIKYY-KNTDSASI 476 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 I + L FD +IL N W +P+LS+ LN+ E + F Sbjct: 477 IIGSPEDLALCGFDLIILPHFNNENWTLTAKAHPWLSKKALQILNIDYNEIAPTLYSDYF 536 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 + + ++ + + + + S +L + G ++ + + Sbjct: 537 NLFLQNKQIVILNAKKYDGKLLVPSNLFLKLQL----KHVIPWLDHGIHTINRSNNIF-- 590 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 R P S ++I+ LI +PY YA++IL L + ++P +D Sbjct: 591 LDPAIKSRDDKVASSTFFPAVLSVTDIETLIRNPYGFYAKKILGLRKKDNIWEEPKISDF 650 Query: 809 GTLFHNIITELIK----KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 G H ++ E K + IN N + + + I + LP + W+ S Sbjct: 651 GNFIHKVLEEYSKNHDKQYINLNLLDKQNALINIGNHILYSTILPNYTKKTWQIKLTAFS 710 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 +F+ + + + + ++I+ ++ I I + G ADRI++ KS + I DYKTG Sbjct: 711 KAFILFDIERRKNCKEIYFETKGELQLNIAGQDIKIIGIADRIEISKSNNITILDYKTGT 770 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSF--SQIDCRKVANLFYIRLKQK------------ 968 P ++ + + PQL +E+ L F ++ + IRL + Sbjct: 771 IPTRKEIELGLSPQLIIESLMLLENGFYTARFRKLDTSEFSDIRLCSRTFVRSAGSVVNS 830 Query: 969 ----------------------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + + + E + L++++ + Sbjct: 831 SCLKLSESSCINKEITIAYVKITSTEPYVQITEIALSIETLNRHKAGLVKLLEHYITNKF 890 Query: 1007 PFISHLRLSEKSNIQSEYDHLAR 1029 F +L LS+ ++Y HL R Sbjct: 891 -FSYNLNLSK----YNDYLHLMR 908 Score = 65.7 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 32/190 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 V I +P + EL+ + K LPII ++ +K +D VS Sbjct: 20 EVQIILPNNFSCLELKKILTDKYKIK---LPIIIPFNSLISKKTDSDY---------VSK 67 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 I+ LL ++++I +++ LP + ++ A+ L + + + Sbjct: 68 IEELLIISKIITEYKD----------------LPFNKNESLKAAEILRKLFNDLIINNID 111 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + ++ +W FL+ W E + + Y++ L++ E + Sbjct: 112 ---IKLIEVYNNSNYWQKIYKFLEYCFLRWQEEISFTQKQTKAVYKLKLLQEEIIRIKN- 167 Query: 226 TKGPIIIAGS 235 II+AG Sbjct: 168 RNKQIILAGI 177 >gi|239826205|ref|YP_002948829.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70] gi|239806498|gb|ACS23563.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70] Length = 1171 Score = 204 bits (517), Expect = 1e-49, Method: Composition-based stats. Identities = 127/955 (13%), Positives = 252/955 (26%), Gaps = 142/955 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----LKIASKYWTERL 199 K L D+I + + L E+ + I + L Sbjct: 123 GFIKQLHDMITECKRYCVTPQHLREHVKALTEQGKKPAEKVLADKLNDISIIYEELERSL 182 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + + L+ + I I G P ++ + H V Sbjct: 183 LNHYID--SEDYLRLLSEKIPQSRYLRNAEIYIDGFHQFTPQEYMVLEQLLIHCKRVTVA 240 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 +D + T T+ LL+ + I+ + + Sbjct: 241 LTVDGPYD-------DRLPNELHLFYLTAKTYHDIRQMALLNDVAIEETMIL-------D 286 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 R + + L E + V + EA N R E +IA + Sbjct: 287 RNMRHQEKALAHLEAY--------YHERPAVVYSEETEAVNVYEAANRRAEIEAIAREIV 338 Query: 380 MSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + + ALI + R VK F I + P+ +L + + Sbjct: 339 HLVRDKGYRYRDIALIVRNTEDYRDLVKTIFYDFHIPYFMDEKEPMHHHPLIELLRASME 398 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLD 494 I + ++ +K L + R A + LE L + + Sbjct: 399 IITSRWRYESVFRAIKTDLLFPVEEDIVALREAMDQLENYVLAYGIKGEKWTNGERW--- 455 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 T + + ++E+K+ L + PL + G S+ + Sbjct: 456 ---TYRRYQALEGLSIPQTDEEKQYEEKLNEWRDIIAAPLSKLERRMRRAKGGRSLCEAI 512 Query: 555 KLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 L + LQ ++ R + E+ + L ++ +E E+ Sbjct: 513 YLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLLNQYVEMLGDESIPVTEF 572 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 II +D + I SRL++ + G+NEG+ P ++ L+ Sbjct: 573 AKIIETGLDRLEFSLVPPAMDQVIIAQLDRSRLIDVKCAFIIGVNEGIIPAKAKEDGLLA 632 Query: 666 RVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRS-LRENNIPTIAS--- 713 + L + + +A + L T E S Sbjct: 633 ETERELLQQFGTRVAPGGREQLFYEPFFIYLALTSPSERLYVTYPLANEEGKALSPSIII 692 Query: 714 ---------------------------------------RWLQRLLVLGGTDFFDNLKK- 733 + +L L Sbjct: 693 KHLTDLFPNLQKRVCGNDPLDAPFAEQHEFVTVPRATLTYLVTQLQAWKRNYSIAPLWWD 752 Query: 734 ------RGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYA 784 Q + RK + P + L + S S ++Q P++ Sbjct: 753 VYNFYVSDQQWRSHARKAIAGVFYTNEATPLKKEISKRLYGKKIQASVSRMEQFQKCPFS 812 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHL 834 + L+L F+ D D G LFH+ + + + K +++ Sbjct: 813 HFVSHGLRLKERAVFR--LDAPDIGQLFHSALKIISDRLREAKIDWRHLSKKQCEQLSME 870 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA---- 887 + I +++ L + + + E SS I + + Sbjct: 871 AVEQIAPLIQQQILLSSNRYYYMKRKLQNVIARTTNVLSEHAKASSFVPIGLELEFGPNG 930 Query: 888 -----KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQL 937 + + L G DR+D +S + + DYK+ + Q+ Sbjct: 931 VLPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNLTEVYYGLALQM 990 Query: 938 SLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + + + A + Y + +K +L E+ Sbjct: 991 LTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLYDEKEVERKLLEQFK 1045 >gi|291535311|emb|CBL08423.1| ATP-dependent nuclease, subunit B [Roseburia intestinalis M50/1] Length = 1174 Score = 204 bits (517), Expect = 1e-49, Method: Composition-based stats. Identities = 117/949 (12%), Positives = 248/949 (26%), Gaps = 126/949 (13%) Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPV 208 + +I + + + L ++ L + + +TE L Sbjct: 115 GEVKSLISELMQYNVRPDALAEFLEKEPLGEGLRLKMQDVLTMYQGFTEYLK--GRYITA 172 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + L+ AE I++ TG P RLM + V +D Sbjct: 173 EEVLELLYDVAEESELLRNSVIVLDEFTGFTPIQNRLMEKLLVLAKKVSVSVTMDVREDF 232 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + E + SL K+ + + E+ L + Sbjct: 233 YKCRGVHELFAMSKKTV--------ASLLKVAELCKVPVEEPLILPTGKQ-----RRYAN 279 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 + L ++ + ++ + ++ N REE A + EN Sbjct: 280 AADLYFMEQNLFRPGAGSYRYKAPEQSMQHIRIMSLKNPREELKFTAREIVRLTRENGYR 339 Query: 387 -KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + A++T D V ++ I I + + ++L I + Sbjct: 340 YRDIAVVTGDVQQYGNYVPEIFEQYHIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYE 399 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ LA E S + + L +DR+ Sbjct: 400 SVFRFLRCGLAARVVTEAKNSDKEPDPAATEDLTQQPETGSHGLTEQEIDRLENYVLARG 459 Query: 505 VPHWQSRLSE----------EDKELAVLLVDHILQCITPLVTYKTNKN-----STCGNLS 549 + ED + + + + PL+ K+ T S Sbjct: 460 IRGASRWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYS 519 Query: 550 ISDWT--KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + + N + +++ K + L K+ E+ D Sbjct: 520 LIRRLDMEQLLKERGNFFEAHGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSD 579 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 I+ + V + T+ + +RL + L G+N+GV PK + +S+ Sbjct: 580 ILDAGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQF 639 Query: 668 MQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYT-RSLRENNIPTIASRWLQR 718 + + A + + + + L T + + S + Sbjct: 640 EREKMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGT 699 Query: 719 LLVLGGTDFFD---------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 LL L + L + L + Sbjct: 700 LLKLFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGER 759 Query: 770 Y---------------------------------SFSEIKQLINDPYAVYARRILKLDFI 796 S + ++Q +A Y L+L Sbjct: 760 EKVMQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKER 819 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEK---- 845 + D G ++H+++ K + L+ Q ++ Sbjct: 820 E--LQQFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIG 877 Query: 846 ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIESIG- 895 + + + + + + + + + Sbjct: 878 DVFEDARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGED 937 Query: 896 --IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLE---AAALKA 946 + L G DR+D I DYK+G + QL + A L Sbjct: 938 EKMRLRGRIDRVDTYETDDKVYVKIIDYKSGNTTFSLLNFYYGLQLQLVVYMNAALELTK 997 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + D + A +FY + D + + + S +E+ L+ L Sbjct: 998 KKYKGKD-TEPAGIFYYHIT-----DPMVDADGQESEEEIRRSILEQLK 1040 >gi|144899272|emb|CAM76136.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 316 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 5/253 (1%) Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 DPY +YA+++LKL +P DP D G+L H + + + + + + Sbjct: 2 RDPYGLYAKKVLKLKALPEIDADPGAADYGSLVHEAVEQFLLAYPQSLPDDAEAKLLAVG 61 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES--IGIH 897 ++ F + P + W F ++ HE+K + + I I + +E Sbjct: 62 EAVFAQALERPGVWAFWWPRFRAVARWLAAHEKKRRPELAAIHTEIKGALEMEGPAGPFL 121 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 L ADR+D+LK G + + DYKTG P + PQL LEAA + G F I V Sbjct: 122 LHARADRVDVLKDGTLALIDYKTGQPPSPKEVAAGYAPQLPLEAAIARFGGFDGIAPAAV 181 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017 + + Y RLK + +L++ +L+ L ++ + P+ + Sbjct: 182 SQMLYWRLKGGAEGGE--EKSAGADPKQLTDDALEGLYGLIAAFDDANTPYEARPHPDR- 238 Query: 1018 SNIQSEYDHLARV 1030 + S+Y HLARV Sbjct: 239 APKYSDYLHLARV 251 >gi|241662729|ref|YP_002981089.1| hypothetical protein Rpic12D_1125 [Ralstonia pickettii 12D] gi|240864756|gb|ACS62417.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 947 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 161/1044 (15%), Positives = 302/1044 (28%), Gaps = 125/1044 (11%) Query: 10 TIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--I 67 AP F A +R+ + + TI VPT I +R Sbjct: 5 AFAPGPAFLSRAADA--------AWRFLDAHAQPPGTATIVVPTAAQIPGVRGALHAGAQ 56 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 +LP I +LG + DL + + RLL + + + Sbjct: 57 AAGTPRLLPRILTLG-----HWLLDLPPEAGSPAGRTPLSRLLAVQQALKTL-------- 103 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 A +A+ L + D + + H+ + + A+ Sbjct: 104 ---AWLREALGAQDDAALWGVAQVLVTVSDDLSQRWLTLDAAHSGADGRADELESALAEA 160 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L+ +L E + + R + G+ IP R M Sbjct: 161 LERTY----AQLSERFLGTESRIVLTFWRLLS--------------GAADPIPMRLRAMQ 202 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + G IV + S P Sbjct: 203 RLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSIGYDWNAP--------------- 247 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + ++ L + + Q + + A Sbjct: 248 -------ESGASAAPSTHADFRNLLLHAWPECATPAQAADDAAAAQLPAPILRIAGAARF 300 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +EA A L L+ ++ AL+ DR +ARRV+ L R + + G LSTT + Sbjct: 301 EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA 360 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L ++ + D A+ L+K P + A A +R + S Sbjct: 361 AALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR 420 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L+ LV DR A+ + + A L G+ Sbjct: 421 LRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRA-------------------GS 461 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + W L L + + + + + S T + + + EW Sbjct: 462 AKLDAWVALLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARYSLTEWRA 521 Query: 608 IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ L++ + + IL +R+ FD +++ G ++ P + F S Sbjct: 522 LLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSN 581 Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGG 724 ++ +L L + Q A D + ++ T P S WL+RL Sbjct: 582 DVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRL- 640 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 ++ L + T P P P T S + L PY Sbjct: 641 --AVSGVRIDTSVTLPSLQTTSQPTDMPAPAAPTLVP------STLSAAAYNSLRRCPYQ 692 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDS 841 + R+L+L + + ++ D G + H I+ ++ + + + L++ I D Sbjct: 693 FFVGRMLRLGELEEVSDELEKRDIGGILHAILHRFHRQLLETPMHDPADRLSLLQTITDE 752 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAI---ESIGIH 897 F + + + + S+L + ++ + +I + + Sbjct: 753 QFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLSDERALR 812 Query: 898 LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 L G DRID+ V + DYKT + D QL + Sbjct: 813 LRGRIDRIDVHDEHGVAVLDYKTQSQMALVRRAKTPFEDCQLPFY----------GVLDA 862 Query: 956 KVANLFYIRLKQ--KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + + ++ L + + D L E+ K++ + Sbjct: 863 RADSGGWVSLDGEARGDKRDVALPDFTQVVDWLIEQMQKDMTALAAGAPLPAFG------ 916 Query: 1014 LSEKSNIQSEYDHLARVAEWREEY 1037 E + L R W E Sbjct: 917 -DESACRYCAARGLCRKGYWTEGA 939 >gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478] Length = 1051 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 131/1033 (12%), Positives = 262/1033 (25%), Gaps = 140/1033 (13%) Query: 55 RAIQELRSEFIEIT----GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110 RA L S + + G+ + P+++++ + + P RLL Sbjct: 64 RARSALTSALLRSSRIGSGRSAVREPLVRTVHGYAYALLRRNAERTGEGPP------RLL 117 Query: 111 ELARLILIWRNKLPDIIKDLYPE--SPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 A I R L ++D + + A L +++ D Sbjct: 118 TSAEQDAIIRELLAGDLEDAAASQSAWPQHLWPALSTAGFANELRNLLARCFERGVDPWD 177 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L L W+ A F + + V + A G Sbjct: 178 LERLGRRCGHPEWIAAGRFARQYEQ--------------VMLLRSAAGMAAPQATARALG 223 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + G+ A + +++ P A + + Sbjct: 224 AAELVGAALDAFAVDPGLLAAERARVRLLLVDDAQQLDPQAARLVRALVAGTERAVVAGD 283 Query: 289 STHPQYSLA----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + L + + L + +S Sbjct: 284 PNQAVFGFRGGEPAGLLGGAVDGGRLVTLTVSHRCAPAVARAVSGITRRLPGG------S 337 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLAR 400 +I + VA+ A + EA IA LR + + + + ++ + A Sbjct: 338 AGKQIEGTGEQDGSVAVRLATSAHAEAAMIADTLRRAHVIDGVPWSQMAVIVRSVPRAAA 397 Query: 401 RVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 R+ L G+ + + + G LS + L ++L A L+ P+ + Sbjct: 398 RLPRALAAAGVPVAMPTMGGSLSQEPAPAALLTVLAATADGLTGERALALLTGPIGRVDP 457 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 R RG L +++ Q+ + + Sbjct: 458 VTLRQLRRT------LQRGRSGDSPGDFGDVLAQTLSPEAESHPQFSGPQAGPLRRVRAV 511 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 Q P T + + L + E Sbjct: 512 LAAAARCHRQGQDPRYTLWAAWHRSGLQ----------SRWLTASERGGPAGVQAARDLE 561 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 TL + + + S A+ I+ +T L + ++ + +L + Sbjct: 562 LVTTLFDITDQYVSRTSG--ASLRGLIEYVTALQLPPVSAEPVSQTQQVTVLSAHAALGH 619 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHD 687 +D +++ GL EG+WP + L+ + L E+ + AA Sbjct: 620 EWDLVVIAGLQEGLWPNTIPRGGVLATQRLLDELDGVTQSASARAPLLAEERRLLVAAMG 679 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG-----GTDFFDNLKKRGQCYLDWT 742 + + P + S + + L R Sbjct: 680 RARRRLLVTAVDNDAGGGGQEPALPSAFFFEIARLADGGGEPAAAQAESAPRVLSAAAVV 739 Query: 743 RKLDYTTKQPHYKRPKPFPP-----------------------------------LEAQP 767 +L P Sbjct: 740 GRLRAVVCAPDGTVDDAARACAATQLARLAMAGVAGADPDGWHGLIPVSTSEPLYGSGDV 799 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 T + S ++ L P R + G++ H +I ++ Sbjct: 800 VTLTPSSLQTLSECPLRWLTERHGGAKPRELR------SAVGSVLHALI-----AGPGRS 848 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + ++ + + SF+E + + + ++ V I Sbjct: 849 EAHLLAELDRVWRRLPFDASWYSS---NELARHRAMIQSFVEWRARTRGELTEVGVEIEV 905 Query: 888 KMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 + + I L G DR++ +G + I D KTG P + + QL++ Sbjct: 906 DGVLQTRRDDGGKIRLRGRVDRLERDGAGRLVIVDVKTGKTPVSKDDAQQHA-QLAMYQL 964 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 A+ G D A L Y C T + D L+ + +V Sbjct: 965 AVAEGMVPAGDEPGGARLVY-------PGKCATTGATERQQDPLTPATRDQWRGLVRQAA 1017 Query: 1003 NGEQP--FISHLR 1013 FI+ Sbjct: 1018 EAMAGPQFIARRN 1030 >gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] Length = 1087 Score = 203 bits (515), Expect = 2e-49, Method: Composition-based stats. Identities = 122/1087 (11%), Positives = 280/1087 (25%), Gaps = 152/1087 (13%) Query: 6 PNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL----R 61 P + T + M +++ R + V T++A Q+L R Sbjct: 35 PKLVTAGAGAGKTETMASRVVSLVANGYVRPE--------QVLGLTFTRKAAQQLEQRIR 86 Query: 62 SEFIEITGKKSTILP---IIKSLGDVV-----EEKFTADLLLSYNLNPPVSNIQRLLELA 113 + I++ P + ++L + + + +L+ Y L PV RL+ A Sbjct: 87 NSLIQLRDTG-LFAPGSDVAQALESIAPKVMTYDAYAGELVSEYGLYLPVEPSARLITDA 145 Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE-EKKWEDL 169 I + + ++ + ++ N + LA N+ +++ D I D Sbjct: 146 ERFAIAHEIVSNHSGEMTTTTSVATVAQ--NVLKLADNMGNVLMSQDDIREHARIMLSDA 203 Query: 170 HAL-----KNEKYGMWWLLAADFLKI------ASKYWTERLVELNASSPVGYQIALMRAE 218 L ++ D KI + + EL S R Sbjct: 204 TELPKARKSGPEFSKDLQKILDVQKIRVEYLELVEELQRQQHELGVVSFGEQMTFAARVA 263 Query: 219 AEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIW 271 + + + +++ + + L+ ++ V D W Sbjct: 264 SAQPGIGAIQRQRYRVVMLDEYQDTSHSQRVLLRSLFGGTPHPELSVTAVGDPMQAIYGW 323 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 T ++ N + +L + + Sbjct: 324 RGATTENLNAFIRDFPLEDDTPAPQDQLTVSWRNPSRV----------------LELANV 367 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387 + D + ++ DV L + + +E +A+ ++ +++++ Sbjct: 368 VADDIFAGAHPRPVDRLSARPGADEGDVQLGYFETQEQEREFVALHMKKIYEQSQQVEID 427 Query: 388 ----------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 +A++ A + L G+ +I L + ++ + Sbjct: 428 DTGRATKKSLSAAILVRTNRHAAEIGRHLQAHGVPYEIVGLGGLLWEPEIQDMVAIATML 487 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD----LKSLVL 493 + D A ++ PL G + + A D L++ + Sbjct: 488 VRPQDSAAALRILAGPLCGLGMTDINALHKRVENMTGAAEERIVYSPGDDPLDHLRAQLQ 547 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 ++ + D A D + I L + + S+SD Sbjct: 548 QQVDNATTKRPEQILGLADAVADMGEAERYTDEGRERIEKLASKLRHLRGYSLGKSLSDL 607 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 T ++ L + ++++D+ Sbjct: 608 FADIETTFN-----LRTEVLARDSVGGATHLDKFADIVASYQGDTVGGLLDYLDLAREHE 662 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT------------AKN 661 +G + +L +S+ L ++ + + + + + Sbjct: 663 NGLDPGEVPAVDDRVLVLTVHKSKGLEWEHVCVLHADSTTYGAKANSFITKVEQVPDEDD 722 Query: 662 PFLSRVMQSDLNLKTA------------------EKYIGQAAHDFEMANGTRHLIYTRSL 703 ++A F +A T + Sbjct: 723 VIEPEPQYDKNGEPKPITRTDYGKAAKALEQQYKADNAEESARLFYVAMTRTEKSLTVTG 782 Query: 704 R-------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ--------------CYLDWT 742 + +L+ L + + +L+ T Sbjct: 783 GGTNSFKPGHGSKKGPYLYLEMLAEKFPDLVVEWTVPDEEPEDATGQGLESGVFPFLEPT 842 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK- 801 K R + S+ LI + + +L++ Sbjct: 843 PAAVRGAKLVEAARADLPEAQSGEEFGLWESDATALIEE-HRALTTPVLEVPMPSELTAS 901 Query: 802 -----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D + + + T + L ++ +E+ P + Sbjct: 902 DVVNLATDPDEFARRRRRPVPFKPNSYAKRGTAFHSWLEERFGMEALLEEDELPGTGEVP 961 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916 + FLE E +S V P + S G L G D + G + Sbjct: 962 VADVEALKEKFLESEWANRS---PYAVETPFR--FNSGGQILNGRMDAVFKEPDGSWFVV 1016 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 D+KTG P+ + QL++ + G I + + + F + Sbjct: 1017 DWKTGRPPQGRDME-HAALQLAIY----REGWRRIIADGQPIRAGFHYVSDNFTFEPRNL 1071 Query: 977 DKKKYSA 983 + A Sbjct: 1072 PDGEELA 1078 >gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c] gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c] Length = 1140 Score = 203 bits (515), Expect = 2e-49, Method: Composition-based stats. Identities = 116/993 (11%), Positives = 252/993 (25%), Gaps = 108/993 (10%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE L S+ + ++RA +EL + P+ + + Sbjct: 73 TLVEAVARRVEAGQELGSILVLTFSRRAARELSERITARV-GAAFGGPVAWTFHSWCYAQ 131 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 A + ++ +R L LI D ++L + Sbjct: 132 LRAYPMAGDPAPRLLTGPERFTRLRELI--------DGSRELGRPGWPAPLEVCLRTRGF 183 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ + ++ + L L W A F Sbjct: 184 AEEVEALLARVREVGLDPASLEELAARARRPDWAALARFYTDYLDNLGYDGALDYPELGH 243 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + E ++ + + + PA RL++ + G ++ D Sbjct: 244 RAARLVEDPERGQPIRDRYRAVFVDEYQDTDPAQERLLAAL--TAGGGDLVAFGDPDQSI 301 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + + + L + R + S E+ R Sbjct: 302 YAFRGARVRGLLDFPARFRRAD----RSPADVLALGVSRRMSPPVLAASREVASR----- 352 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---N 385 LP + P +V + +E E +IA LR Sbjct: 353 ---LPVSGLPVWALRAHRRLAPAEPDHAGEVEALSFPSEGAETEAIADLLRREHLTRAVP 409 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--ND 442 + A++T V LT G+ +D++ PL+ +++L + L Sbjct: 410 WHEMAVLTRSAEALPAVARALTAAGVPVDLAGDEPPLAERPAAALLLTALRCADDPGSLT 469 Query: 443 FMAIATLVKHPLAKFGFPEKYLS--------------RAKNALELVALRGNKNSYDIMDL 488 +L+ PL A + + +S Sbjct: 470 TADARSLLLSPLGGADPAGLRALGRALRDHARSAPGEAVAAADGADSDQAPGSSVGWPAG 529 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + I + + E AV + + L T +++ Sbjct: 530 LVSSAELIRDLVADPGSLPGP--VPAELARPAVQVGSLLALVGRRLRAGVTPQDALWALW 587 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + W + R + L ++ E D+ Sbjct: 588 EGTAWPARLRRVSASGYGAARR--AAEADLDAVVALFDAAGRLGERRGPGGGAQGLIADL 645 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 ++ + + + +L ++ L +D +++ G+ +G WP A++ L Sbjct: 646 TSQDFAADDRAGAEVRPDAVRLLTAHRAKGLEWDVVVIRGVQDGAWPDLRAQHSLLGTEQ 705 Query: 669 QSDLNL-------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP------------ 709 +++ + + RH + ++ Sbjct: 706 LDAPQRGGLRPPETPRDRWAEERRLFYVAVTRARHRLVVTAVDAVGADGARRSELLAELG 765 Query: 710 --------------TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 T+ S + L++ + L + +P Sbjct: 766 VRITSGASWTPRPLTLPSLVATLRRLAADPGATPALRQAARRRLATLAAVTDHADRPLVL 825 Query: 756 RPKPFPPLEAQPRTYSFSEIKQL--------------INDPYAVYARRILKLDFIPHFKK 801 P A+ T S + + + Sbjct: 826 SAHPDRWWGARDETASDVPVAAPTAPIPLSGSSLSSLRDCSLRWFLEHEAHAGQP----- 880 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G + H + E+ R + ++ + ++ E Sbjct: 881 ATTAQSFGRVVHALADEVTAGRTPADLAALDARL-DLVWRQLAFEAQWRSDQERTAAR-- 937 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + FL+ + + + ++ + L G DRI+L G V + D+K Sbjct: 938 QALARFLDWHAAER-GRAVLGSEARFGIDLTVDGRPVRLRGSMDRIELDDGGQVHVVDFK 996 Query: 920 TGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 TG + + QL A++ G+ Sbjct: 997 TGRSAVSPREIAEHV--QLGTYQLAVREGAVDD 1027 >gi|290957555|ref|YP_003488737.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22] gi|260647081|emb|CBG70180.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22] Length = 1121 Score = 203 bits (515), Expect = 2e-49, Method: Composition-based stats. Identities = 130/1104 (11%), Positives = 266/1104 (24%), Gaps = 150/1104 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A V + +++A ELR G + P + Sbjct: 22 TLVEAVAGRVARGADPARVLVLTFSRKAAVELRDRMALRMG--AARAPQATTFHSFCYAL 79 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 80 IRAHQDSDLFVEPLRLLSGPEQDVAVRALLAGQPDLER---LGLAHVRWPDELRACLTTR 136 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ EDL A W+ A+ FL + V A Sbjct: 137 GFADEVRAVLARSRELGLAPEDLRAFATRIGRPDWIAASAFLAEYLDVLDLQGVLDYAEL 196 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R + + + + PA RL+ +A G ++ D Sbjct: 197 VHRAVLLAGRPGVAERLAARYDAVYVDEYQDTDPAQVRLLRALAG--GGRTLVAFGDPDQ 254 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + S + L R L + + R Sbjct: 255 SIYTFRGADVNGILEFPSAFPRVD----GRPAPVVVLRHSRRSGAELLTATRLLTQR--- 307 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + + ++ + V + E +IA LR + E+ Sbjct: 308 -------MPLTRLPAEKVRAHRELRPVRDGGRVEVYTYPTPGTELDNIADVLRRAHLEDG 360 Query: 387 ----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL- 440 + + L+ A ++ LT G+ ++I PL L + L A+ + Sbjct: 361 VPWSEMAVLVRAGARTIPSMRRALTAAGVPLEIDGDDLPLRHEPAVQPLLTALRAVARAE 420 Query: 441 ---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD--- 494 D A A P+ E + + R Sbjct: 421 LETADAAAPAEEPDGPVPDGPVEEPHGPSEEPHGPSGEPREPSGDPSGEPHDPSADPSGQ 480 Query: 495 ------------------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC------ 530 + T+ T + + + D + + Sbjct: 481 PHDRGGDPSAEPGPPRTSWLDTETALTLLASPLAGMDTADLRRLGRALREEERAGGNPVP 540 Query: 531 -------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 L + + + + LW +G Sbjct: 541 PPSDELLTRALAEPERLVAHDPVYARGAQRLGALLRKARERLAGGGTTEEALWELWDGTP 600 Query: 584 LSSLF---------------------------SKIIETGSCIKANAIEWIDIITRLIDGE 616 + E + +I I + Sbjct: 601 WPRRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGLGALNFLAEIEAEDIAAD 660 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 T+ + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 661 TLTGRAVRPDAVRLMTAHRSKGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAE 720 Query: 677 AEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 A + A R L+ T + SR+L L V Sbjct: 721 PLTPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPRDVTGR 778 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPR 768 +R +L TT P P P Sbjct: 779 PRRPLSVASLVAELRATTVDPRVSEPLREAAALRLARLAALSDEDGRPLVPSAHPYRWWG 838 Query: 769 TYSFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHN 814 + +E K + + L + G + H Sbjct: 839 MFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVH- 897 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ + + ++ + + + FL+ Sbjct: 898 VLADEVASGRTPADLDVLMERLDSVWNALAFDAPWKSEQEKQHARV--ALERFLKWHVMD 955 Query: 875 QSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQK 931 ++ + + +E+ + + G DR++ G + D+KTG + Sbjct: 956 RTGRTPVASEHDFDVTLEAGDYEVRIRGSMDRVETDTEGRAYVVDFKTGKQAVSSGEVTR 1015 Query: 932 LIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 PQL++ A++ G+ + + ++L+Q K A E + Sbjct: 1016 H--PQLAVYQLAVREGAVDEPFGGVRPEAGGAELVQLRQGAARKNGGETVPKVQAQEPLQ 1073 Query: 989 KSL--KNLIEIVTLLQNGEQPFIS 1010 L + + + Sbjct: 1074 GEWVGDLLATAAGKVLDERFSPTA 1097 >gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217730|gb|ABP47134.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] Length = 1038 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 121/1041 (11%), Positives = 270/1041 (25%), Gaps = 110/1041 (10%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLG 82 + LV+ SV + + R ++R+ + G+ + P+++++ Sbjct: 33 SSLLVDTAVAHIAAGCDPESVLLLTGSARLSVQVRASITSALLGAGGRAAVREPLVRTVH 92 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY--PESPLSLPI 140 + + P RL+ A I R L ++D P Sbjct: 93 SYAFGVLRLAAQRNGSPPP------RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLR 146 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + + A L D++ L + W A F + + Sbjct: 147 PALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRFAQAYEQ------- 199 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + + + A G + G+ A + + +++ Sbjct: 200 -------IMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVD 252 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 P A + + + L L Sbjct: 253 DAQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGPALILNRSHRCA 312 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + I+ +D + +A+ A + E+ IA ALR Sbjct: 313 APLADAIAAITRRLPGADASREFTGRAE-------QGTLAVRIAASPHAESALIADALRR 365 Query: 381 SLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN 435 + + + ++ + + L G+ ++ PL+ L ++L Sbjct: 366 AHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTVLE 425 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 A + D LV P+ + R + A + L+ V Sbjct: 426 ATAEKLDGERALALVTGPIGRVDPVSLRQLRRTLRRGVTAPDRGFGELLVEALERDVAAL 485 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 L + + + + S K Sbjct: 486 PDEHAR-----------------ALRRLRAVLTSARRSAEQGGDPRQTLWQAWNRSGLQK 528 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + + +L ++ + + S + Sbjct: 529 RWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI------TGLSL 582 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--- 672 + + ++ + +D ++L GL EG+WP + + L+ D+ Sbjct: 583 PPARGDARSGDAVALISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDG 642 Query: 673 ------NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN--NIPTIASRWLQRLLVLG 723 L + + + A R + ++ + + + S + L + Sbjct: 643 VAAPGQRLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDEAALPSPFCHELAAMA 702 Query: 724 -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE--AQPRTYSFSEIKQLIN 780 L R L + + A + + Sbjct: 703 TEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGA 762 Query: 781 DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPE------ 830 DP + Y R L D D + L + L+++ + Sbjct: 763 DPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLG 822 Query: 831 ------------INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS 877 ++ +D + K R ++ +FL+ + Sbjct: 823 SLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGE 882 Query: 878 IEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 + ++ I + + G+ + G DR++ G + + D KTG +P + + Sbjct: 883 LTEVGTEIDVDGVVAGGEGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQA 942 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 QL++ A+ AG + D L Y+ K T + E+ E Sbjct: 943 HA-QLAMYQLAVAAGLIADGDEPGGGRLVYL---GKTTGGRATERHQDAVTPEVRELWEA 998 Query: 993 NLIEIVTLLQNGEQPFISHLR 1013 + E Q F++ + Sbjct: 999 RVHEAAAATQGPS--FVARVN 1017 >gi|325261822|ref|ZP_08128560.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5] gi|324033276|gb|EGB94553.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5] Length = 1120 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 103/897 (11%), Positives = 235/897 (26%), Gaps = 119/897 (13%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209 + +I +E L + ++ + + L + + Sbjct: 121 EVKSVISEFTQYGIGFEKLDEFMEGLAPESYLYYKLQDIRRVYEGFENYLADKYIT--KE 178 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + ++ H +++ G TG P +L+ + +V +D Sbjct: 179 ELLDVLSDAVPHSELLKNSVVVLDGFTGFTPVQNKLLGELMRVCRNVVVTAVMDSREDPY 238 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 ++ +++ L + + + +Y R K Sbjct: 239 VYKH---------------PYQLFALSRQMVTSLVQTARENRAQVEEAVCLYSRPFYRFK 283 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 + + + Q +++ N ++EA +A +R + E Sbjct: 284 DNEVLGFLEAELFRYSKKQYEREQDV---LSVHVVRNPKQEAEYVASGIRHLVREKGLRY 340 Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + A+I +D + +GI I + + + SLL + + + Sbjct: 341 RDIAVIASDMDAYAVCMEKACDTYGIPIFMDHKKSILLNAFVEYVRSLLAMAEQNFSYES 400 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + ++ +A F R + +E L Y + ++ + + Sbjct: 401 VFRYLRTGMAGFT------RREIDQMENYVLALGLKGYKKWQAAWVRRTSGMEEEALSEL 454 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + R E+ L +L + + + + Sbjct: 455 NGLRVRFVEQLDALVYVLKQPSKTVKDVTAAVYDFLAKQQAQVRLKEMEVRFQEQGELAL 514 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + + + LF K +E + + E+ +++ ++ V Sbjct: 515 A--------KEYAQVYRITIELFDKFVELLGDERISLKEYCELLDAGMEEAKVGVIPPSL 566 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEK 679 + I +RL + L G N+ + P + + LS + A++ Sbjct: 567 DQVVIGDVERTRLKDIKALFFVGANDTLLPGSLGQGGLLSERDREQFAGQKISLSPGAKE 626 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 M + S + +Q L L + + +G Sbjct: 627 KTYIQKFYLYMNLTKPTKYLSISFSRVSAEGKTLRPAYLVQDLRRLFPLLKIRDEETKGL 686 Query: 737 CYLDWTR--------------------------------------KLDYT--TKQPHYKR 756 + T LD K P Sbjct: 687 AQTELTEKTAMNYLVQGLRERALGVNEEWKELYTWYVKHAAGTEKILDAAFFKKTPERLT 746 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + +S + +++ + YA + L+L + D G + H + Sbjct: 747 KTAAEMMYGDASRFSVTRLERFASCAYAHFLTYGLRLSDREA--YQFEAMDLGNIAHQSM 804 Query: 817 TELIK-------KRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISH 865 K I L+++ ++ + K+ H Sbjct: 805 ERFAKKADINQVSWIGMPEEMRAQLIEESVEESIVDYGNTVLYSTARNEYMITRIKKLIH 864 Query: 866 S--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYKT 920 + E+ + + +G DRID + V +TDYKT Sbjct: 865 RSVWALTEQLRKGDFVPSGYEMKFG----------SGKIDRIDTCEDEEKIYVKVTDYKT 914 Query: 921 GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCI 974 G + QL + A + ++ A +FY R+K Sbjct: 915 GSRSFDITAFYHGLQMQLPVYLNAAMDMEQKKHPGQEIQPAGIFYYRMKDPIVEKEK 971 >gi|163786813|ref|ZP_02181261.1| hypothetical protein FBALC1_16547 [Flavobacteriales bacterium ALC-1] gi|159878673|gb|EDP72729.1| hypothetical protein FBALC1_16547 [Flavobacteriales bacterium ALC-1] Length = 919 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 148/1004 (14%), Positives = 305/1004 (30%), Gaps = 144/1004 (14%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L + +P+KRA L+ + ++ P I S+ + VEE + L Sbjct: 17 LKFEDLRFVLPSKRAGVFLKHHLSTLL-EQPIFAPHILSIEEFVEELSGLQNTSNTEL-- 73 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 L +L ++ + S + A+ L + I+ Sbjct: 74 ----------LFKLYESYKELTIEA-----------DLESFDSFSKWAQILLQDFNEID- 111 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 L ++ Y ELN S Q L++ + Sbjct: 112 --------RYLIPQEQ-------------IFDYLNAI-KELNHWSLEATQTELIKNHLKF 149 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + T S+ + + + A L I + + N Sbjct: 150 WKRLKDYYLT---FTESLLQNKKGYQGLI-YREAAENLEAYIESNADKIHVFLGFNALNE 205 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + S +++ L + + Sbjct: 206 SES-------------RIIQGLLQNDLAHIYWDIDKTFIEDPIHDAGLFTRNHKSKWKYF 252 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLA 399 + N I + +I +A I L ++N A++ + NL Sbjct: 253 KNEPFNWITSHYCNKKKTEVIGIPKLIGQAKYIGQLLEDISKTNKNLSSVAVVLGEENLL 312 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 V + + +T L + F+ +A+L +H A Sbjct: 313 IPVLNSIPKA--------------------VTQLNVTMGLPLQFVPLASLFEHLYAIHKN 352 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + + + I L I+ + + + ++ E+ Sbjct: 353 NPQNF-------YYKDVISILSHPSIYPLFKTESKNISGEIIDYIQKNNLVYITVEN--- 402 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + L+ +++ + L N + + L + Sbjct: 403 ----LKKTNNIHNELLDLLFKSWEDNSKVALKSCSDLIFKMKANFDNSKKKNSLELEYLY 458 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 +L + +++ + N I L+ ET+ K E L I+G LESR+L Sbjct: 459 RFNSLFNQLNELNNNHKYLN-NVSILHTIYKELLSLETLDFKGEPLEGLQIMGMLESRVL 517 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-EKYIGQAAHDFEMANGTRHLI 698 +F+T+I+ +NEG+ P N F+ ++ + NL T EK H + + +++ Sbjct: 518 DFETVIISSVNEGILPSGKTNNSFIPFDVKVENNLPTYKEKDAVYTYHFYRLLQRAKNVY 577 Query: 699 YTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + + SR++ +L + G ++ KQ Sbjct: 578 ILYNTEVDTLKGGEKSRFITQLEIEGIHKIKHITISPEVPI------IESPLKQIPKTPL 631 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + +S S + I +P Y +IL + +++ G++ HN + Sbjct: 632 VTEKIKALALKGFSPSSLTNYIRNPIDFYFEKILGVKEFEDVEENIAANTLGSVIHNSLE 691 Query: 818 ELIKKRIN-----KNTPEINHLMKQIIDSHF----EKENLPPHIDIIWRHLFHKISHSFL 868 +L K ++ H +KQI+ HF + + ++I + + +F+ Sbjct: 692 DLYKPLEGSFLTVEHLKTFKHQIKQIVTKHFKGLYKDGDFSKGKNLIIFEIAQRYISNFI 751 Query: 869 EHEEKI---QSSIEKIFVNIP--AKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTG 921 E + + I+ I + + I+ + I L G DRID L +G + DYK+G Sbjct: 752 TSEIESLNNGNQIKIIAIEADETIDIEIDGLVFPIKLNGKVDRIDEL-NGVTRVIDYKSG 810 Query: 922 DNPKKE-------TAQKLIDP-----QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 + + D Q+ A + S ++ + + + LK+ F Sbjct: 811 KVEQNKVEIVNWEDLTTDYDKYSKSFQILCYAYMMHKKSLIEL-PVEAGIISFKNLKEGF 869 Query: 970 KIDCITNDKKKYSADELSEK-----SLKNLIEIVTLLQNGEQPF 1008 + D+L + L ++V + N F Sbjct: 870 LNFGKKESSHSRTKDQLITEETLCNFETELKKLVLEICNPNIDF 913 >gi|325286151|ref|YP_004261941.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489] gi|324321605|gb|ADY29070.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489] Length = 910 Score = 202 bits (513), Expect = 3e-49, Method: Composition-based stats. Identities = 113/733 (15%), Positives = 232/733 (31%), Gaps = 84/733 (11%) Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 D ++ + +A Sbjct: 223 WDLDEYFYSDPVHDAGFFIRQFSKQWYYFKDKPLQVTNGNYLTPKNITITGVPKNVSQAK 282 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 I L ++ K A++ D L + + I+I+ G PL + S+ Sbjct: 283 YIGSVLGKLYNDKKSMLTNTAVVLGDETLLNPLINAIPEEINGINITMGFPLHKSPLESL 342 Query: 430 LTSLLNAI----FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L + K + + T++ HP + F + + ++ Y Sbjct: 343 FSQLFDLYIRKDEKGWYYQHVTTVLNHPYIQLLFATEDNTINAADAICNQIKSRNWIYVD 402 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + L+ + K++ Sbjct: 403 VAKLQLISSTSN-------------------------------------LDLLFYKSNLT 425 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + I L + + + L + L + + ++ + + Sbjct: 426 VPVFIKKCLALILAVKEKINA--EGNGLELEYLYRFHQLFNQLNNLVVKYPFLN-DLQSL 482 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + L+ ET+ K E L I+G LESR L+F+T++L +NEG+ P + N F+ Sbjct: 483 FGLYKELLSSETLDFKGEPLKGLQIMGMLESRNLDFETVLLTSVNEGILPSGKSNNSFIP 542 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIP-TIASRWLQRLLVLG 723 ++ L T ++ + F +++ + + + SR +++L Sbjct: 543 FDIKKMYGLPTYKEKDAVYTYHFYRLLQRAKNIHLVYNTEPDVLEGGEVSRLIRQL---L 599 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 N + + +S + + I +P Sbjct: 600 ADSNISNYITETIAFPEIKSPKKKVVSIQKDAHLM-ELIKGIAAYGFSPTSLSNYIRNPL 658 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQI--- 838 Y + ILK++ + ++ GT+ H + EL + +N ++ L+ +I Sbjct: 659 DFYKKNILKINELEEVEETVAANTFGTIVHETLDELYQPFVNTFLEAEQLKALLPKINST 718 Query: 839 IDSHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIE 892 + HF +L ++I ++ K +F++ E + I+ I + + K AI Sbjct: 719 VRKHFAIHYKNVSLEEGKNLIAFNVVLKYVENFIKLEIESAKKHKIKIIGLELSLKTAIN 778 Query: 893 SIG----IHLTGFADRIDLLKSGFVDITDYKTGDNPKK-----------ETAQKLIDPQL 937 G +H+ G DRID + G + + DYKTG ++ E K QL Sbjct: 779 VPGVNFPVHIKGKLDRIDEI-DGVLRVIDYKTGKVEQRNLNLSNWEDIVEEYDKSKAFQL 837 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 A +D + + +K N + D L K K L ++ Sbjct: 838 LCYAYMYNH--LVPVDKVEAGIFSFKNIKAGILKFS-ENKNSIITQDTLL-KFTKELHKL 893 Query: 998 VTLLQNGEQPFIS 1010 V + + +QPF++ Sbjct: 894 VGAICDPDQPFVA 906 Score = 77.7 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 70/266 (26%), Gaps = 40/266 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L ++ +P+KRA L++ + T + P I+S+ D VE Sbjct: 18 SLENLIFVLPSKRAGTFLKNAISKHT-SSTIFAPEIQSIEDFVENISGLAYA-------- 68 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S+ Q+L EL + D L + I+ Sbjct: 69 -SSTQQLFELYKAYTTTVKGEQDTFY---------------AFSKWGTTLLQDFNEIDRY 112 Query: 163 EKKWEDL-HALKNEKYGMWWL-------------LAADFLKIASKYWTERLVELNASSPV 208 + + L + W + L+ + L + Sbjct: 113 LVDTKKIFSHLNAVQEINHWTVEKDKSTIITNYMAFWNSLEELYTAFNTSLKQDGLGHQG 172 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 ++ +K + G A ++ T+ + N A + LD + + Sbjct: 173 LVYREACANLNAYIQSTSKQKHLFIGFNALNTAEELIIQTILENTN-AEIYWDLDEYFYS 231 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQY 294 + + + P Sbjct: 232 DPVHDAGFFIRQFSKQWYYFKDKPLQ 257 >gi|328911094|gb|AEB62690.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus amyloliquefaciens LL3] Length = 1166 Score = 202 bits (513), Expect = 3e-49, Method: Composition-based stats. Identities = 116/1036 (11%), Positives = 263/1036 (25%), Gaps = 152/1036 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E + I + S + ++ P V+ + L +LI + Sbjct: 50 ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + ++ + + ++ + + ED+ + + Sbjct: 105 -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153 Query: 183 ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236 L I + L + L+ + + + G Sbjct: 154 GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P R++ + H D + + ++ Y L Sbjct: 212 QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + L+ K L + Sbjct: 263 YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412 +I+A N R E IA ++ + + + LI + +K +G+ Sbjct: 310 EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471 I + + S L+ + + A+ K L PE+ + + L Sbjct: 370 YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 E + + + V R + + + + E + + +++ Sbjct: 430 ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589 L KT ++ + T + + + E + + + L Sbjct: 490 NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQLLE 549 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + + ++ + +F+ SR+ + G Sbjct: 550 EFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609 Query: 650 NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701 N+GV P +N LS + + L +A + H MA + L T Sbjct: 610 NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669 Query: 702 SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726 + + T+ S + RL L Sbjct: 670 PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729 Query: 727 ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768 + + + + + + RP L + Sbjct: 730 LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLDRP-VSRQLYGEHI 788 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S ++ ++ +A L+L F + D G LFH+ + + + + Sbjct: 789 KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846 Query: 829 PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874 + ++++ +KE L + + KI + E Sbjct: 847 EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905 Query: 875 QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921 S I + + + + L G DR+D +S + I DYK+ Sbjct: 906 ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965 Query: 922 -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + Q+ ++ + A + Y + D + Sbjct: 966 DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020 Query: 980 KYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1021 PMDLDEIEQEIFKKFK 1036 >gi|86134921|ref|ZP_01053503.1| conserved hypothetical protein [Polaribacter sp. MED152] gi|85821784|gb|EAQ42931.1| conserved hypothetical protein [Polaribacter sp. MED152] Length = 912 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 131/1033 (12%), Positives = 280/1033 (27%), Gaps = 167/1033 (16%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 + + E V +P++RA ++ EF LP I ++ + Sbjct: 1 MQSFISETLDDILQTTQTFEDVVFILPSQRAKVFVKQEFKNKISVG--FLPEILNIEQFI 58 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIW-RNKLPDIIKDLYPESPLSLPISPAN 144 ++ + L L + +N + + + L Sbjct: 59 QQVSGVQKADNIQL---------LFHFYSIYKNVEKNADAFDVFSSWALTVLQDFNELDQ 109 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + K++ + IE KW K + L + + L++ N Sbjct: 110 HLVNTKDIFIYLRDIERLR-KWSVKGTFKETDLIRDHYSFLEKLNVYYDAFYAFLIDKNI 168 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 ++ L + G + +L V N I Sbjct: 169 GYQGLMYREAVKKIDHFLSQNRNKKFFFIGFNALNKSEEKLFQRVLELGNSEIYW----- 223 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 I A +N+ S Sbjct: 224 DIDEAFFNS--------------------------------------------------S 233 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 K ++ I N ++ +I A + + L Sbjct: 234 HQAGKFIRKYESEWKYFEKNQLKTIGNSFSNTKNIKVIGAAKNTTQIKYVGEILEEM--P 291 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI------- 437 + +AL+ AD L L + I+I+ G PL +S+L ++ Sbjct: 292 SFANTALVLADETLLPITLNSLPKAINAINITMGYPLKDVPTTSLLFAIFQLYTSQEKLQ 351 Query: 438 ---FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + +KH L + + + N+ D++ L+ + Sbjct: 352 KTTLNQFYYKDVIRFLKHQSIYK------LLCSVDVFTTQIAKNNQTFIAESDIELLLKN 405 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + KN H + + L+D + + L ++ Sbjct: 406 EDDSIKNVIHNLFKPFISVTDFINQILALIDVLKVEVNTLEK---------------EYL 450 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 T + + + + L + ++ + ++ + Sbjct: 451 FRFYTAFTQLKTLQTEFEYFTDLKTLSQFFKQLIDSESLSFQGEPLKGLQLMGMLETRVL 510 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + + ++ + FD I + L Sbjct: 511 DFENVILTSANEGVLPASSQQNSFIPFDVKI-------------------------EFGL 545 Query: 675 KTAEKYIGQ-AAHDFEMANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLK 732 T + + H F + +++ + + SR++ +L +L K Sbjct: 546 PTYREKDAIFSYHFFRLMQRAKNIYILYNTEHDVFGSGEKSRFVTQLEMLRTDIV---HK 602 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + L K E +S S + + +P A Y ++ILK Sbjct: 603 IVSPKVVAQHTALKQVAKNNDVLE----RLKEIAKSGFSPSSLTNYLYNPIAFYKQKILK 658 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------INHLMKQIIDSHF 843 + ++ GT+ H + EL K + K E L+ + F Sbjct: 659 IKEFDDVEETVAYNTLGTIVHETLDELYKPFVGKFLQEENVEEMQKIAKDLIIKYFKIEF 718 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS----IEKIFVNI--PAKMAIESIGI- 896 + ++ + + + ++ +FL E + ++ + A++ ++ + Sbjct: 719 KNGDISTGKNRLIFEVANRFVANFLTKERALLKDENNQLKIVATEENLSAEITVDGLDFP 778 Query: 897 -HLTGFADRIDLLKSGFVDITDYKTGDNPKK----------ETAQKLIDPQLSLEAAALK 945 L G DR+D L +G + I DYK+G ++ Q+ L A Sbjct: 779 IKLHGNVDRVDEL-NGELRIIDYKSGMVKSPELKVLDFNALREKEQYKAIQVLLYAFLYT 837 Query: 946 AGS-FSQIDCRKVANLFYIRLKQKFKI---DCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 F K + L + F + + E E+ + L E + + Sbjct: 838 KSKNFDFTKNLKGGIYSFKNLNEGFLSINFSSSYKNPETNITQEKLEEFISQLKEYLLEI 897 Query: 1002 QNGEQPFISHLRL 1014 N EQ F+ L Sbjct: 898 YNMEQEFLEPADL 910 >gi|188586471|ref|YP_001918016.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus JW/NM-WN-LF] gi|251764608|sp|B2A611|ADDB_NATTJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|179351158|gb|ACB85428.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1186 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 132/1082 (12%), Positives = 298/1082 (27%), Gaps = 164/1082 (15%) Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA--RLI 116 + E PII + + + +L + +S RL L+ RL Sbjct: 17 YIIDSITEQLKAAPDGDPIIFLVPEQATFQMEQAILRRSD----ISGFSRLHILSFQRLS 72 Query: 117 LIWRNKLPDIIKDLYPE---------------SPLSLPISPANAIWLAKNLADIIDIIET 161 + I K + L + A ++ L+ +I Sbjct: 73 QKVLEEQGGIAKADLSDTGKEMIIKNILLQRKDDLEILEKVAVKSGFSEKLSRLISEARM 132 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL-MRAEAE 220 E E L + E + + + L + E Sbjct: 133 YEITPEMLEQISQELDLIHLKQKLQEISQVFTDYETFLQHQGYHHQEDRLSKAGQKMEGN 192 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 ++ I G +G P +L+ + + + L + Sbjct: 193 NISFLAGSTCYIDGFSGFTPQELKLLEGLLTKCSNIELALTLPPQF-------TGKIDDE 245 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + T T+ Q + + ++IK+ N + RS F Sbjct: 246 LHLFHPTLKTYNQVWELAVNNDIEIKKSKHFPNENEEH----RSASSLPRFKDNPALAHL 301 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397 + +NKI + ++++E N R E IA +++ + ++ K A+I + Sbjct: 302 EKEWGKNKINPYDSEPTGLSIVEGTNLRNEIDKIAREIKLLVRDHGMRYKDIAVIVRELE 361 Query: 398 LARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 V + I + P+ L S + + D+ + ++K L Sbjct: 362 SYEPVIKAVFNDYKIPHFLDRKEPVHHHPLVEFLRSSVETVISNWDYEPLFRMLKTGLLP 421 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI--ATQKNNTHVPHWQSRLSE 514 E + ++ + K + + L+R A N + + Sbjct: 422 ISSEEIFQVENYVLAHGISGKDWKKQGKWNFIANFDLERENIAPSNRNKQYLSEINSIKG 481 Query: 515 EDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + ++ + + I + + +K + LS+ + + ++ + ++ + Sbjct: 482 KVRDTLLEFDSKLRGINKSESLSAQFKNQEAEEDNLLSVREISTYLWELIEQLQIEYQLE 541 Query: 572 LPNLWFE------------EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +L E + T+ L +++ K E++ II + + Sbjct: 542 EWSLEAEERKDFVEMQLHNQLWDTVIDLLDQMVTFLGEQKVTLSEYLQIIESGLANIKLG 601 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------ 673 + + SR L + G+++G++P + + + L Sbjct: 602 LLPATLDQVLVGTADRSRYHEIKVLFMAGVSDGLYPAKIDDDGIIDDRERITLRQHDVEF 661 Query: 674 LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT-----------IASRWLQRLL 720 T E+ + Q + ++ L + ++ T L + Sbjct: 662 APTTEQKLYQEQYLIYNVLTQPSQKLYLSYPAADSEGRTMSPSTIISDIQEMFPELFQEY 721 Query: 721 VLGGTD---------------------------FFDNLKKRGQCYLDWT----------- 742 G + + L + Q L + Sbjct: 722 QNDGPENDEDFRQYIIDGKKAVSNLIKLINKVGHPEKLAEDKQQLLAYLINEHPDLFYST 781 Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 + LDY + + L S S ++ P+ +A + L+L +F Sbjct: 782 PEIKALDYKKSLSPLTQ-EVIDKLYPNKIATSVSGLESFCQCPFRHFAEQNLRLKEREYF 840 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLP 849 + + G +H + K N + + +++ + L Sbjct: 841 R--LEPASLGLFYHAGLKLFWDKLQENNLTWHKLKTEEREALVSEIVEVLSERLKNRILL 898 Query: 850 PHID--------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIE 892 ++ + + I ++ + Sbjct: 899 ASERYKYFKKKLHELLSRAVEVLSWY-----SDDKGFYPVGSEIGFGKDEPLSTLELELP 953 Query: 893 SIG---IHLTGFADRID---LLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAAL 944 S + L G DRID ++ + DYK G + +D QL+ Sbjct: 954 SFPNKKVQLKGRIDRIDTGKKDGDLYLRVIDYK-GKSKNLELRDLYYGLDLQLAAYMTVA 1012 Query: 945 KAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 S + + Y + + + K S + +K L L+ + Sbjct: 1013 MRNSDKLTGDQMFPGGMLYFGV-----ENPVVPTDKPVSPAQARDKLKSTLKMRGYLIDD 1067 Query: 1004 GE 1005 E Sbjct: 1068 EE 1069 >gi|328552684|gb|AEB23176.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus amyloliquefaciens TA208] Length = 1166 Score = 202 bits (512), Expect = 4e-49, Method: Composition-based stats. Identities = 116/1036 (11%), Positives = 264/1036 (25%), Gaps = 152/1036 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E + I + S + ++ P V+ + L +LI + Sbjct: 50 ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + ++ + + ++ + + ED+ + + Sbjct: 105 -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153 Query: 183 ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236 L I + L + L+ + + + G Sbjct: 154 GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P R++ + H D + + ++ Y L Sbjct: 212 QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + L+ K L + Sbjct: 263 YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412 +I+A N R E IA ++ + + + LI + +K +G+ Sbjct: 310 EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471 I + + S L+ + + A+ K L PE+ + + L Sbjct: 370 YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 E + + + V R + + + + E + + +++ Sbjct: 430 ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589 L KT ++ + T + + + E + + + L Sbjct: 490 NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQLLE 549 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + + ++ + +F+ SR+ + G Sbjct: 550 EFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609 Query: 650 NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701 N+GV P +N LS + + L +A + H MA + L T Sbjct: 610 NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669 Query: 702 SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726 + + T+ S + RL L Sbjct: 670 PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729 Query: 727 ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768 + + + + + + +RP L + Sbjct: 730 LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLERP-VSRQLYGEHI 788 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S ++ ++ +A L+L F + D G LFH+ + + + + Sbjct: 789 KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846 Query: 829 PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874 + ++++ +KE L + + KI + E Sbjct: 847 EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905 Query: 875 QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921 S I + + + + L G DR+D +S + I DYK+ Sbjct: 906 ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965 Query: 922 -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + Q+ ++ + A + Y + D + Sbjct: 966 DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020 Query: 980 KYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1021 PMELDEIEQEIFKKFK 1036 >gi|297202229|ref|ZP_06919626.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] gi|297148065|gb|EDY54288.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] Length = 1152 Score = 202 bits (512), Expect = 4e-49, Method: Composition-based stats. Identities = 137/1099 (12%), Positives = 264/1099 (24%), Gaps = 169/1099 (15%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A V + +++A ELR G + P + Sbjct: 42 TLVESVASRIARGGDPARVLVLTFSRKAAVELRDRMALRIG--AARAPQATTFHSFCYAL 99 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 100 VRAHQDSELFVEPLRLLSGPEQDVTVRELLAGQPDLER---LGLAHVRWPDDLRACLTTR 156 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L A W AA FL + V A Sbjct: 157 GFADEVRAVLARSRELGLGPGALDAFARRIGRPDWRAAAAFLAEYLDVLDLQGVLDYAEL 216 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G ++ D Sbjct: 217 VHRAVLLARRPEVAERLAAQYDAVFVDEYQDTDPAQVRLLHALAG--GGRTLVAFGDPDQ 274 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + A ++ L R L + + R Sbjct: 275 SIYAFRGADVNGILDFPYAFPRAD----GRAAPVEVLRTSRRSGAGLLAATRLVTQR--- 327 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + + ++ + V + E +IA LR + E Sbjct: 328 -------MPLTRLPAEKVRAHRELAPVREGGRVEVFTYPTPGTELDNIADILRRAHLEDG 380 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 + + L+ A V+ LT G+ +DI PL + L + L A+ Sbjct: 381 VAWGEMAVLVRAGSRTIPTVRRALTAAGVPLDIDGDDLPLRHEPAVAPLLTALRAVATAE 440 Query: 442 DFMAIATL------------------------------------VKHPLAKFGFPEKYLS 465 + G Sbjct: 441 AAESGVRPEEVRPDESAASDQGAASEERSSDEEAASMTGPSAEEAASGPRPPGPRPPVEE 500 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 A + S S+ + T+ T + + + D + Sbjct: 501 AASAQPSPDDETAPEESPADSGAPSVEDCWLDTETALTLLASPLAGMDAADLRRLGRALR 560 Query: 526 HILQC-----------------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + P + G + L N E Sbjct: 561 DEERAAGNALPPPSDVLLARALAEPERLAVHDPAYARGAQRLGALLGKARERLANGGSAE 620 Query: 569 HRKLPNL----WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL------------ 612 W + + + A + Sbjct: 621 EALWDLWEGTPWPGRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFL 680 Query: 613 -------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 I +T+ + + + ++ S+ L + +++ G+ EG+WP + L Sbjct: 681 EEIDAEDIAADTLTRRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLE 740 Query: 666 RVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLL 720 L A + A R L+ T + SR+L L Sbjct: 741 ADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELG 800 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----------------------RPK 758 V +R +L TT P RP Sbjct: 801 V--EPKDVTGRPRRPLSVAALVAELRATTVDPRVSDTLREAAARRLARLAALADEDGRPL 858 Query: 759 PFPPLEAQPRT-------------------YSFSEIKQLIN-DPYAVYARRILKLDFIPH 798 + S S + QL N + R +K D Sbjct: 859 VPSAHPYRWWGMFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPAT 918 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 G + H + E+ + + + + + + Sbjct: 919 V-----AQGFGNVVHVLADEVASGHTPADLAVLMERL-DSVWNALAFDAPWKSAQEKENA 972 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDIT 916 FL+ ++ + + +E+ + + G DR++ G + Sbjct: 973 RV--ALERFLKWHVMDRTGRTPVASEHDFDVTLEAGEVEVRIRGQMDRVEADAEGRAYVV 1030 Query: 917 DYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKID 972 D+KTG P + PQL++ A++ G+ + + ++L+Q Sbjct: 1031 DFKTGKQPVSSAEVEHH--PQLAVYQLAVREGAVDEAFDGVRPEPGGAELVQLRQGAPKR 1088 Query: 973 CITNDKKKYSADELSEKSL 991 K A E + Sbjct: 1089 DGGETLPKVQAQEPLQGEW 1107 >gi|297584274|ref|YP_003700054.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10] gi|297142731|gb|ADH99488.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10] Length = 1157 Score = 202 bits (512), Expect = 4e-49, Method: Composition-based stats. Identities = 140/965 (14%), Positives = 288/965 (29%), Gaps = 146/965 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194 + L +I + + ED+ A+ ++ L + Sbjct: 106 FRVFEHATGTAGFIDKLESMITECKRYNQSAEDIEAMAEDESLPVGLKDKLYDLSLIMNK 165 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 +E+ + + +L + ++ + I + G P + + Sbjct: 166 ISEQTASVRLA--SEDDFSLAIEQVKYSEMLKEAMIAVDGYHHFSPLEEAFLHELMTSSK 223 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT-----YSTHPQYSLAKLLDFLDIKRED 309 I+ LD + ++NT + H Q L + F + R Sbjct: 224 QVIMALTLDKLPSAD--EELDPFDLFFETANTAQRTLIAANHLQIGLKPAVHFEERTRFQ 281 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K L ++ R + S V ++ A N+R Sbjct: 282 KKGLRHLEAMSNQR-------------------------PADPSDDHSGVNIVAAVNKRA 316 Query: 370 EAISIAIALRMSLDE---NKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTL 425 E IA +R + + K A+++ + + R ++ I + + A Sbjct: 317 EIRFIAREIRRLVRQENYRYKDFAVLSRNPDDYRDLIEHIFEEEQIPVFVDAKRSAIHHP 376 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SLL+ + K + + +K L + + E + L N Y Sbjct: 377 LIEFVRSLLDIVSKNWRYDDVIRCLKTELTFPI-DQSVTREHLDTFENITLALGLNGYQW 435 Query: 486 MDLKSL----VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + R A + H L + + + D I + + Sbjct: 436 YDYEQWNKRLQFYRAAKEGEEDHTITLMHDLHKIMVDPLIQFHDKITSQ-NTVNSIIEAL 494 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + LS+ + + LD+ R ++ K L S+F + E K N Sbjct: 495 FNLLVALSVPEKLASFR----DQALDKGRLQEARDHDQIWKELISIFDQASEACGQDKMN 550 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I + +++ ++ + + SRL + L G N+GV P ++ Sbjct: 551 PITFNNMLDTGLESISYSIIPPALDQVVAASMATSRLSDISCTFLIGANDGVIPMPAEES 610 Query: 662 PFLSRVMQSDL------NLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIAS 713 F+S + L AE+ + + A + LI + L ++ Sbjct: 611 AFMSDRERVTLLESGHELAPAAERQLLNEQYLVYQAQTSPKDRLIISYLLSDDEGKAKQP 670 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------------TTKQPHYKRPKPFP 761 + + + LD + + DY T + +KR P P Sbjct: 671 SIILNHVKEMFPALKTEIAVESPADLDISDEDDYFISSPEGTQSFLTERLQRWKRGYPLP 730 Query: 762 PLEA------------------------------------------QPRTYSFSEIKQLI 779 + Q T S S ++Q Sbjct: 731 DIWWSVYNWYMSERTYAPTVRTSLTSLFYDNNPGSLSKTAARGLYGQKMTASVSRLEQYY 790 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEIN 832 + + +A L+L +F+ D D G LFH+ + EL + PE Sbjct: 791 SCAFKQFANYGLRLREREYFR--LDAPDIGILFHDALKELTANLKQEGRSFTELSEPEAV 848 Query: 833 HLMKQIIDSH---FEKENLPPHIDIIW-RHLFHKIS--HSFLEHEEKIQSSIEKIFVNIP 886 K I+++ + L + + ++ + + E+ ++ + V + Sbjct: 849 RRSKNIVENLAPKINRNILKSSFRLRYILSKLEQVVIRAAMILMEQAKRTGFQPEAVELG 908 Query: 887 A---------KMAIESI-GIHLTGFADRIDL--LKSG-FVDITDYKTGDNP-KKETAQKL 932 ++ + L G DR+D G ++ + DYK+ Sbjct: 909 FGTGSDLPPLSYTLDDGTTVELAGRIDRVDSANTPEGFYIRVIDYKSSKTDLSLSDVYYG 968 Query: 933 IDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + A+ + FS + A + Y + I +D K + +E +++ Sbjct: 969 LAMQMLVYLDAIMKNAAYFSNGEDVIPAGMLYFHVHN----PVIKSDSGKLTPEEAAQRM 1024 Query: 991 LKNLI 995 LK Sbjct: 1025 LKEFK 1029 >gi|308173039|ref|YP_003919744.1| ATP-dependent deoxyribonuclease subunit B [Bacillus amyloliquefaciens DSM 7] gi|307605903|emb|CBI42274.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus amyloliquefaciens DSM 7] Length = 1166 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 116/1036 (11%), Positives = 263/1036 (25%), Gaps = 152/1036 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E + I + S + ++ P V+ + L +LI + Sbjct: 50 ELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLIEEHK-- 104 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + ++ + + ++ + + ED+ + + Sbjct: 105 -----------HDFKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESGTASEYR 153 Query: 183 ------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236 L I + L + L+ + + + G Sbjct: 154 GERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVIKGARVYVDGFY 211 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P R++ + H D + + ++ Y L Sbjct: 212 QFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY---------YKL 262 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + L+ K L + Sbjct: 263 YQTAKELNADIS-CKELHGTKR------------HQHVPELACIESQYDVRPAAVYTGGQ 309 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412 +I+A N R E IA ++ + + + LI + +K +G+ Sbjct: 310 EAFTVIQAQNRRAELEGIAREIQSLVRDRGYRYRDMAILIRQPEDYKDLLKEVFADYGLP 369 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNAL 471 I + + S L+ + + A+ K L PE+ + + L Sbjct: 370 YFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVDQL 429 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 E + + + V R + + + + E + + +++ Sbjct: 430 ENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIRLQ 489 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKTLSSLFS 589 L KT ++ + T + + + E + + + L Sbjct: 490 NRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMVEAQQHGQAWDAVIQLLE 549 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + + ++ + +F+ SR+ + G Sbjct: 550 EFAGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVIGA 609 Query: 650 NEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR--HLIYTR 701 N+GV P +N LS + + L +A + H MA + L T Sbjct: 610 NDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSDRLYVTY 669 Query: 702 SLRENNIPTI-ASRWLQRLLVLGGTD---------------------------------- 726 + + T+ S + RL L Sbjct: 670 PIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQTYTASQ 729 Query: 727 ---FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPPLEAQPR 768 + + + + + + RP L + Sbjct: 730 LRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKRLDRP-VSRQLYGEHI 788 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S ++ ++ +A L+L F + D G LFH+ + + + + Sbjct: 789 KGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLEAPDIGQLFHSSLKLISDRLREQKL 846 Query: 829 PEIN-----------HLMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LEHEEKI 874 + ++++ +KE L + + KI + E Sbjct: 847 EWRDLTKDQCRNFSYDAVERLAPR-LQKEILLSSNRHFYVKEKLQKIVTRVSGILSEHAK 905 Query: 875 QSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG 921 S I + + + + L G DR+D +S + I DYK+ Sbjct: 906 ASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS 965 Query: 922 -DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + Q+ ++ + A + Y + D + Sbjct: 966 DKGLDLAEVYYGLALQMLTYLDLSITHSADWLGMKATPAGVLYFHI-----HDPMIQASL 1020 Query: 980 KYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1021 PMELDEIEQEIFKKFK 1036 >gi|291333832|gb|ADD93515.1| hypothetical protein GB2207_01992 [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 890 Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats. Identities = 118/700 (16%), Positives = 216/700 (30%), Gaps = 70/700 (10%) Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSAL 391 PP + + Q D L+ + ++E I+ L +N ++ L Sbjct: 193 PPLQQAVIAQATDCQQPITPQPVDGDGWLVACADPQQELIAATQWAAQQLADNPNQRIGL 252 Query: 392 ITADRNLARRVKLELTRF-------GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + + + + LT + ++ISAG L T LL Sbjct: 253 VIPELDHSLAQVSRLTAESLTEKGVDVAVNISAGTSLLETTLVRSAVELLGIFQYQRPLS 312 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 L+ P + F + + L K L+ + A + + H Sbjct: 313 QWLELLYSPYSVFSQLPMQVL------VDIELAVRKCKAFDFTLERFLNHVSAAVRLSPH 366 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 A + + ++ N S S W L ++ Sbjct: 367 ---------------ADSIAVQLKSIFECRSNHRKNNKIR---QSFSQWRAFFECSLSDL 408 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 H KL +++ L I+ + + + + V Sbjct: 409 GWPGHHKLNTFEYQQREHWQRLLEQFCRLDNLGIEVGLTTARKHLVQ-MAQDAVFHPQTG 467 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIG 682 + L ILG LE L FD L + G++ +P NP L Q + E+ + Sbjct: 468 DAPLQILGLLEGAGLKFDQLWILGMHSQNFPAAVNINPLLPADFQRCHAMPHSLPERELN 527 Query: 683 QAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 A + R LI + L AS + + + N++++ Sbjct: 528 IAKALWRDYRSNARRLIASYPLLRGEEQLTASPLVLDVTRVALDQLVGNIRRQP------ 581 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 L+ + E + +K + P+ +A L + + Sbjct: 582 -HWLERPDETELVAEATIAYNPEREKIKGGSMLLKNQSSMPFNAFAIHRLWAEPLQQPIA 640 Query: 802 DPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKEN------LP 849 DRG L H+I+ L + N N +I+ ++Q+I+ L Sbjct: 641 GLTAKDRGILLHDILYRLWGEWRNAAHLHSLNEQQISDALEQVIEQSLTALGTQHPVLLG 700 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + K+ ++L HE+ + + I A + + I L DRID + Sbjct: 701 SRFRQLEHSRLQKLIIAWLTHEKSR-PAFDVIGREQVASVDFGDLQITL--RLDRIDQI- 756 Query: 910 SGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIR 964 G + DYK+G+ P + DPQL L A +F+QI + +I Sbjct: 757 DGQSLVIDYKSGEVTPSHWQGDRPKDPQLPLYIMATNPQASGCAFAQIKGGNIK---FIG 813 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + + D + E E+ K L + +G Sbjct: 814 IGESSFFDQQAV---IDNWPEQREQWRKALSNLAREFSSG 850 >gi|226325450|ref|ZP_03800968.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758] gi|225206193|gb|EEG88547.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758] Length = 1034 Score = 201 bits (511), Expect = 5e-49, Method: Composition-based stats. Identities = 113/917 (12%), Positives = 253/917 (27%), Gaps = 143/917 (15%) Query: 151 NLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + +I + + + + + +++ + + E L + + Sbjct: 121 EVKSVISELTQYNISPDGMDDMITEADESSYLAWKLKDIQVMYQAFEEYLADKYIT--KE 178 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + ++ + I++ G TG P +++ + +H ++ +D Sbjct: 179 EILDILCNVMDKSRMLKDSVIVLDGFTGFTPLQNKVLGEMLHHCQKVMITVTMD--KRED 236 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + S S K+L + Sbjct: 237 PYVMKDKYQLFALSKQMVTSLVKIAGEEKVLVEEPVCLYQEPVW---------------- 280 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENK 386 F ++ ++ S+V + A N R E A +R + Sbjct: 281 RFKNAPALAFLEKELFRYSGRTYREKQSNVRVYAAANPRMEVECAAQRIRFLIRKKEYRY 340 Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 ++ A+I +D NL + I + + + + SLL + + Sbjct: 341 REIAVIASDMNLYADEIEKIFREYEIPVFMDYKRNVLLNSFVEYIRSLLAMAEQNFSAES 400 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + ++ L F E L I K I K+ T Sbjct: 401 VFRFLRTDLVGFTGEELDLLENYVLAL-----------GIRGYKKWQEKWIRRAKDTT-- 447 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558 EE+ E+ L ++ LV + T +++++ + + V Sbjct: 448 --------EEELEVLNHLRVCFVEKTEDLVFVLKQRQKTVRDVTLAICEFLEKEEIQKQV 499 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 L+N + + + + + LF K + + E+ +++ ++ + Sbjct: 500 KVLENQFTEAGELALAKEYAQIYRVVMELFDKFVSLLGDERIALKEYRELLDAGMEEARI 559 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + +RL + LIL G+N+ + P N + +S + E Sbjct: 560 GVITPSLDEVMAGDIERTRLKDIRALILLGVNDSLIPGNASAGGLISDRDRERFE----E 615 Query: 679 KYIGQA------------AHDFEMANGTRHLIYTRSLRENNIPTIASRWL---------- 716 + I A M T L+ T S + + + +L Sbjct: 616 RGIALAPGTREKSYIQKFYLYLHMTKPTEELMLTYSKVSADGKSRRAAYLIGDLKRMYTK 675 Query: 717 ----------QRLLVLGGTDFFDNLKKRGQ------------------CYLDWTRKLDYT 748 + +L + Q DW K+ Sbjct: 676 LSVFNMDQYGMETKEMLPQTGIGSLIEGLQNPKKMEEGSWQELYRWYCAQEDWNEKVHDL 735 Query: 749 TKQPHYKRPK-----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + Y+RP+ S S +++ A + L+L + Sbjct: 736 ARINRYRRPEDNLTLQTARKLYGDWAPSISRLEKFAACACAHFLTYGLRLKERE--VYEF 793 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLP--------PHI 852 D G +FH + + ++ + +Q ++ + Sbjct: 794 AALDFGNIFHKALEKYARRVEREGLEWTEVTKEQQEQFASESVDESIVDYSNTVIYSSAR 853 Query: 853 DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LL 908 + ++ + + ++ + S + + +G DRID Sbjct: 854 NAYIVPRMKRMMNRTVWAMTKQLRKGSFKPEGYEVSFG----------SGKIDRIDTCET 903 Query: 909 KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIR 964 + I DYKTG + QL + + +K A +FY R Sbjct: 904 EDQVYVKILDYKTGAKSFDMAAFYHGLQMQLVVYMEEAVRLEERKHPGKKIVPAGIFYYR 963 Query: 965 LKQKFKIDCITNDKKKY 981 +K + +K Sbjct: 964 MKDPIVGKELDEEKTGR 980 >gi|153812829|ref|ZP_01965497.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174] gi|149831041|gb|EDM86130.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174] Length = 1109 Score = 201 bits (511), Expect = 5e-49, Method: Composition-based stats. Identities = 107/925 (11%), Positives = 245/925 (26%), Gaps = 135/925 (14%) Query: 150 KNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + +I E + E+L +++ + + + + + E L + + Sbjct: 120 DEVKSLISEFMQYEVRKEELDKMIQDASDKPLLQMKLKDVAVLYEAFREYLSDHFMT--A 177 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + ++ E K +++ G TG P ++ + V +D Sbjct: 178 EEVLEVLAKEIPFSEKLKGSTVVLDGYTGFTPVQHTVIRELLQVCEHVTVTVTMDV---- 233 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + Y +H K++ L D+K E Sbjct: 234 -----REQLLAKGKPHELFYMSH------KMIRSLSEFTRDMK-------EPIWVKAGAE 275 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE----AISIAIALRMSLDE 384 F + ++ + +V + +A N E A I+ +R Sbjct: 276 SRFAKAPALNFLEQNLFRYHRGAYNEEQKEVQIFQAGNPEREMEETARRISRLVREHGYR 335 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + + + + I + + L + L + + Sbjct: 336 YGQIAVITGNLEEYGSIARHVFDAAEIPFFVDEKHSVLMNPFVEYLRAALEMTVQGFSYE 395 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA-TQKNNT 503 ++ ++ ++ E + + I + + + + Sbjct: 396 SVFRYLRCGMSDLSRREVDILENY-----------VIALGIRGFRKWNETWVRIYRGMDP 444 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 V + + E E L + + Y I + K+ + Sbjct: 445 AVIMDLNEIREHFTEEVRELAEGFSGKKKTVGEYSRYLYDFIVKRQIQEKLKVQELHFKQ 504 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 K + + + L K++ + E+ ++ + V Sbjct: 505 QGDRAREK----EYAQIYGIIMDLLDKMVSILGEEVVSPEEFRQLLETGMTQAKVALIPP 560 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTA 677 + I +RL + L G+NEG PKNT L+ + + L Sbjct: 561 GIDQVLIGDMERTRLKDIRALFFVGVNEGCIPKNTESGGILTEMDRDFLGNQGIELAPGP 620 Query: 678 EKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 ++ + + + L + S + +L R + + ++ Sbjct: 621 KELMNMQRFYLYLNLTKPSESLCLSYSRSNGKGEAVGPAFLIRTIQTLFPEIHIERAEKP 680 Query: 736 QCYLDWTRKLDYTT----------------------------------------KQPHYK 755 + LD + + + + Sbjct: 681 EKELDLLETPNTSVGYLLENLTDEEKRKENQLFAELYSWYLNSPDYCTMTKKLTEAAFLR 740 Query: 756 RP------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 +P L + + +++ +A + + L+L + + D G Sbjct: 741 KPVDQISKSVAKALYGEISPNGATRLERFSACAFAHFLKYGLELTER--AEYEFRAMDMG 798 Query: 810 TLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKENLP--------PHIDIIWRH 858 + H + E + K + I D+ +K + Sbjct: 799 NIIHQALEEFAVELRQKQLNWRELSDEERDTIADNCLDKIAADYGNTILQSSARNYYMIE 858 Query: 859 LFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD-- 914 +I + E+ E + I G DR+D+++ Sbjct: 859 RTRRILRRTVWALQEQLKNGRFEPEGFEVA----IGG------GRIDRLDVMQEEDRVYV 908 Query: 915 -ITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 I DYKTG+ + + QL + AA + A +FY +K Sbjct: 909 KIIDYKTGNTSFDLVSIYYGLQMQLVVYMDAAMQAEQRKHPDCQVRPAGIFYYNVK---- 964 Query: 971 IDCITNDKKKYSADELSEKSLKNLI 995 D + + + DEL + K L Sbjct: 965 -DPMLQKEMEEDLDELDPEIFKKLK 988 >gi|229496673|ref|ZP_04390387.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] gi|229316570|gb|EEN82489.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC 35406] Length = 1020 Score = 201 bits (511), Expect = 5e-49, Method: Composition-based stats. Identities = 151/1094 (13%), Positives = 322/1094 (29%), Gaps = 207/1094 (18%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L P++RA R E + + + P I ++ + E+ Sbjct: 24 ELHQCCFVFPSQRAGTFFRYELSKRL-TQPSFSPQIITVESLTEKLSGLKSAQR------ 76 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 Q++ L R I+ R +L PL +P A+ L + I+ Sbjct: 77 ---TQQVCLLYREIVTLREELG---------FPLDEKSNPHLPFDHAEKLLSDFNDIDNY 124 Query: 163 EKKWED----LHALKN------------------------------EKYGMWWLLAADFL 188 + ++ L AL + E+ + + Sbjct: 125 LVEPDEIFHNLKALDDLTSLDYISPEQKEAIEIFFGYLSKVNSDKKERLEELFSAMTTEM 184 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L L + E + + P+ ++ Sbjct: 185 QLLYHRFRATLESLGLGYSGMLARRAAELDEETFDRNLQKL--------LSPSVRHIIVA 236 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 G L + I + T ST+ + H Sbjct: 237 ------GLYHLSTAEREILKRLKRTNNHYSTSFYWEEVKLANH-------------TTPS 277 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 D L T ++ + +K + +++ ++ Sbjct: 278 DWGFLIG-------------------KTMQESKQELGGEWLSTQEKGVPKIDIVQIPSDI 318 Query: 369 EEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLST 423 + + L+ + + + A+ + N + L I+I+ G PL Sbjct: 319 GRSKLVPTLLQELIGDAPRAVEDLQCAIALPEVNTLLPLLDALQGISHPINITMGYPLHL 378 Query: 424 TLHSSILTSLLNAIF--------KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 + + L + +L A+ L+KHPL+ + Sbjct: 379 SSVAVWLHRYIELQQFTRWSEKGELLPLDALEHLIKHPLSN--------LLVSSEELSPL 430 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + +Y +D + + + E +L+ ++ + L Sbjct: 431 NEALRYNYYYIDYQKICALYPQDLPEPLRLLI-------EPISDKSVLIQRLITLLNRLA 483 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + S V ++ + + F ++ + L ++ Sbjct: 484 SLL-QEEDNDAEEADSKAEAGHVHYIRVL---------EIEFVKKLRDLVIQVGNLLPLM 533 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A ++ +L++ ET+ + E L I+G LESRL+NFD LI+ NEG P Sbjct: 534 GD-TAERTILYRLLFKLVEEETLPFEGEPLEGLQIMGFLESRLINFDYLIIPESNEGALP 592 Query: 656 KNTAKNP-FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIAS 713 N ++ ++ N+ T + A+ F R + + ++ S Sbjct: 593 HKRPINRGYIPYNVRLGYNMPTYQSDDYTEAYYFYRLISRARRVFFIV---DSRSEKEPS 649 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-HYKRPKPFPPLEAQPRTYSF 772 R+L +L L ++ K + + + R + + S Sbjct: 650 RFLAQLRYLFHLTPQEHTVKVSMLATQTPKIVIPKDEAAMTVLREYTTSNRDDIKKALSA 709 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK------ 826 S + P Y + I ++ I D GT+ H+++ L + K Sbjct: 710 SSLSTYALCPLQFYYKYIRQIPEIEERTDLLSPGDFGTVIHDVMQHLYEPYEGKLLSSQD 769 Query: 827 -----NTPEINHLMKQIIDSHFEKENLPPH---------IDIIWRHLFHKI--SHSFLEH 870 + + I++S++ + L + + R + ++ F Sbjct: 770 YEWLIDPHTSLPRISTIVNSYYAQNVLHQNSTPKEIEGMHQMYIRMIMEEVYAVLKFDAQ 829 Query: 871 EEKIQSSIEKIFVNIPAKM--AIE--SIGIHLTGFADRIDLLKSGFVDITDYKTGD---- 922 + + + M + I + GF DR+D + G + I DYKTG Sbjct: 830 YIRRGHQLAYVASEQRIDMIEPLPELGIDVRFKGFIDRLDEV-DGLLRIVDYKTGSDSQT 888 Query: 923 ---------NPKKETAQKLIDPQLSLEAAAL---------KAGSFSQIDCR--KVANLFY 962 +K +K I Q+ L + A+ + + + R +V Y Sbjct: 889 FKDWNQLYFAQEKSQHRKAIA-QIFLYSEAVLRLVENGRAQQEGLNWLQPRHNRVQPSLY 947 Query: 963 IRLKQ----KFKIDCITNDKKKYSADELSEKSLK----NLIEIVTLLQNGEQPFISHLRL 1014 +LK K + + + D + + L E++ L + + PF Sbjct: 948 -QLKGMCSNKESYNPLIRFNQTEIEDYATSEIRDSYCHELHEVLLRLFSPDVPFA--QTE 1004 Query: 1015 SEKSNIQSEYDHLA 1028 E++ + + Sbjct: 1005 DEEACRYCAFKAIC 1018 >gi|119963788|ref|YP_948453.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1] gi|119950647|gb|ABM09558.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1] Length = 1118 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 140/1092 (12%), Positives = 277/1092 (25%), Gaps = 160/1092 (14%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 +L + V R D L+P + + P + A LR F + + P ++ Sbjct: 59 TVLVESAVRRVREDGLDPE---QILVLAPGRHAAAALRDTFTGRLDRSLSTTP-ARTWAS 114 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + P++ +LL LI + L + + + Sbjct: 115 YAFDVIRRAKAEGI---LPLTRPPKLLSGPEQDLIIKELLEGHSRPGFQLPWPEDLTAAL 171 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + + D I + EDL L E W+ AA+ R+ E Sbjct: 172 PTRGFRHEIRQLFDRIIESGRTAEDLVGLAYECGRPDWMAAAELYSEYRDVLDLRMPE-- 229 Query: 204 ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 A P G + + + I++ + S PA L+ A+ G V Sbjct: 230 AFDPAGIITTARQIFQDSPEFLAAERQRLQLILVDDAQESNPAVFELL---ADIGEGKDV 286 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + + + S + L L + + Sbjct: 287 VVTYSPDTVVQGFRGARPDLVSELPSLLGGTQQ-----KVLERPLSVTHRHTPEVAEAWT 341 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + GR IS+ M E V + E +A + Sbjct: 342 RVAGR---ISQRSGGQLARQMEQPQRPEGTGQATTSDHGRVEGHVLPSAVHELRYVAQRI 398 Query: 379 RMSLDENKK---KSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLL 434 + + A+I + +++ L+ GI + + A + + L Sbjct: 399 LEAQLRESREFSDIAVIVRNGGQISQLQRYLSGQGIPVRVPVADSAVRDEVAVRPLLEAF 458 Query: 435 NAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 + +L+ + E R E ++ G ++S Sbjct: 459 AIVLDPGKLTPETAVSLLTSRIGGATAIELRRLRQSLRREELSGGGGRSS---------- 508 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 A P + L E L ++ + Sbjct: 509 ---DALLVEALLQPGALASLGIEGSSARRLARMIAAGTAAAAEPGANAESVLWALWHATG 565 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + R +L + F + ++ + Sbjct: 566 LSSRWTETALEGGNAGARADRDLDAMMALFHTAERFVDQLPGSG----PEQFLDYLLNQE 621 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + +T+ + + + + I+ + + +I+ GL EGVWP + L + +D Sbjct: 622 LPMDTLAARAQLEACVEIMTPASAAGREWPVVIVAGLQEGVWPNTRLRGELLGSTVYADA 681 Query: 673 -----------NLKTAEKYIGQ--AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + + I + R ++ ++ + S +L + Sbjct: 682 VEHGVDYALKRGPLSRLRDIRYDELRSFSTAVSRAREVLICTAVSSEDE--QPSAFLDYV 739 Query: 720 LVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHY--------------------KRP 757 LG + R +L + P Sbjct: 740 APLGSGEYKRDYTPVDRPMTLRALVAELRQHAQSEDAGTGINGTAHEAARILARLAGTEP 799 Query: 758 KPFPPLEAQPRTY------------------SFSEIKQLINDPYAVYARRILKLDFIPHF 799 S S+++ + P + + Sbjct: 800 AVPGAHPDSWWGLAALSSYEAVVPAGGTVSVSPSKVEAVHKSPLDWFVQAAGGEAATDF- 858 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 GTL H+I EL + + E + + + K+N + Sbjct: 859 -----ARSLGTLVHSIAQEL----PDASGAEYVAELVRRWPTLGMKDNWEG---KLDFQR 906 Query: 860 FHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGI-------------------HLT 899 + ++ + V ++ + I + L Sbjct: 907 AELMVRKLAQYVLIMRSEGRSLLAVEHDFEVQLPDIAVNAGGTGDPHAPDEEAVRHAVLR 966 Query: 900 GFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-- 956 G DR+++ G + I D KTG P K K PQL AA+ G+F R+ Sbjct: 967 GQVDRLEIDPEGRLVIVDLKTGKRQPGKAEVAKH--PQLGAYQAAVLRGAFLDAGTREET 1024 Query: 957 --------------VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 +L K K + S D ++L+ L Sbjct: 1025 NDAGSLAGSGHGFVPGGAVLAQLGTKTKSPAVQQQDPLDSTDN----WAESLVNEAAALM 1080 Query: 1003 NGEQPFISHLRL 1014 G F + Sbjct: 1081 AGAT-FEARHDP 1091 >gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis FRC41] gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis FRC41] Length = 1074 Score = 200 bits (509), Expect = 8e-49, Method: Composition-based stats. Identities = 116/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91 + T++A Q+L + + + L I G++ + + Sbjct: 63 RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 L+ Y L PV RL+ L I + + + L ++ + Sbjct: 123 SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191 L ++ I+ +D+ + + + Sbjct: 174 LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 + L N + R E + +++ + A L+ Sbjct: 234 VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ + GA V D W T + + L + Sbjct: 294 RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + L + ++ + ++ +V L + Sbjct: 336 PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395 Query: 367 EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +E +A L + + +A++ + + + LEL G+ ++I L Sbjct: 396 AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++ + + D + ++ P G + + A + + Sbjct: 456 PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515 Query: 485 IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 L+ L T ++ A D L+ + L + Sbjct: 516 TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575 Query: 540 NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+ D + V E + + S + Sbjct: 576 YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVISDFARVPN 635 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + ++++++ DG +S + IL +++ L + + + + + Sbjct: 636 ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681 T+ + S L E Sbjct: 696 TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715 A + + + + + + Sbjct: 756 ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815 Query: 716 ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769 L + V + +D ++ +++ E + Sbjct: 816 EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875 Query: 770 --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + S+I L DP +ARR + RGT FH + Sbjct: 876 VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + E+ ID + + FL+ E + Sbjct: 931 ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +V P +++I + G D + G + D+KTG P + ++ + QL++ Sbjct: 971 YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028 Query: 942 AALKAGSFSQIDCRKVANLF-YIR 964 A +D +V LF Y+ Sbjct: 1029 LAWAR--LQGVDPSEVQALFHYVG 1050 >gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002] Length = 1074 Score = 200 bits (508), Expect = 1e-48, Method: Composition-based stats. Identities = 116/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91 + T++A Q+L + + + L I G++ + + Sbjct: 63 RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 L+ Y L PV RL+ L I + + + L ++ + Sbjct: 123 SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191 L ++ I+ +D+ + + + Sbjct: 174 LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 + L N + R E + +++ + A L+ Sbjct: 234 VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ + GA V D W T + + L + Sbjct: 294 RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + L + ++ + ++ +V L + Sbjct: 336 PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395 Query: 367 EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +E +A L + + +A++ + + + LEL G+ ++I L Sbjct: 396 AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++ + + D + ++ P G + + A + + Sbjct: 456 PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515 Query: 485 IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 L+ L T ++ A D L+ + L + Sbjct: 516 TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575 Query: 540 NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+ D + V E + + S + Sbjct: 576 YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPN 635 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + ++++++ DG +S + IL +++ L + + + + + Sbjct: 636 ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681 T+ + S L E Sbjct: 696 TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715 A + + + + + + Sbjct: 756 ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815 Query: 716 ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769 L + V + +D ++ +++ E + Sbjct: 816 EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875 Query: 770 --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + S+I L DP +ARR + RGT FH + Sbjct: 876 VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + E+ ID + + FL+ E + Sbjct: 931 ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +V P +++I + G D + G + D+KTG P + ++ + QL++ Sbjct: 971 YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028 Query: 942 AALKAGSFSQIDCRKVANLF-YIR 964 A +D +V LF Y+ Sbjct: 1029 LAWAR--LQGVDPSEVQALFHYVG 1050 >gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length = 1073 Score = 200 bits (508), Expect = 1e-48, Method: Composition-based stats. Identities = 125/1051 (11%), Positives = 274/1051 (26%), Gaps = 170/1051 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90 V T++A Q+L + + + P I G + + + Sbjct: 68 QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 126 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L+ Y L PV RL+ L I RN + + +L + Sbjct: 127 GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 178 Query: 151 NLADIIDIIETEEKKWEDLHAL----------------KNEKYGMW---W---LLAADFL 188 L ++ ++ ED+ + + W +A Sbjct: 179 -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 237 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243 K E L + + + + +++ + + Sbjct: 238 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 297 Query: 244 RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+S++ + G V D W T + + + Sbjct: 298 VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 346 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 R L + + S T ++ P +V+L Sbjct: 347 DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 406 Query: 363 EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418 +E +A + + ++ +A++ + + + ELT+ GI ++I Sbjct: 407 WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 466 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 L + L SL + + +D A ++ P G + + + + Sbjct: 467 SGLLDIPEIADLISLATMLVRPHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 526 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + L L + + D + L + L T Sbjct: 527 ERREKNPDPLAELDAIIEEATAIEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 585 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 S++D T R+ P+ L ++ G Sbjct: 586 RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 645 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +++ ++ +G +S + IL +++ L +D + + + + Sbjct: 646 LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 705 Query: 659 AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688 + + ++ D E + + Sbjct: 706 STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 765 Query: 689 EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735 + ++ + T + L+ L G + K Sbjct: 766 VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 825 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769 + R +P PR Sbjct: 826 GVFPQLLAADSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 885 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + +++ + N+P ARR+ + RGTLFH + + + Sbjct: 886 LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 940 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 E+ + + D F + + +FL + + FV P ++ Sbjct: 941 ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 980 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 I + G D + G + D+KTG P I QL++ A Sbjct: 981 TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1034 Query: 950 SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979 ++ +V F Y+ F+ + + ++ Sbjct: 1035 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1065 >gi|325109168|ref|YP_004270236.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305] gi|324969436|gb|ADY60214.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305] Length = 1129 Score = 200 bits (508), Expect = 1e-48, Method: Composition-based stats. Identities = 145/1104 (13%), Positives = 316/1104 (28%), Gaps = 165/1104 (14%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 + V PT R+ Q + ++ P + + E + LNP Sbjct: 34 IGEVLWLTPTHRSAQAVLKRLLD-DDLACCWAPGVMTFEQFAERVLRGAGQPASLLNPA- 91 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 +R + + I R + L A L I ++ EE Sbjct: 92 ---ERRMLVKSTISDVRR-----------DGELQYFNRVAETRGFGNQLGRFIAELKREE 137 Query: 164 KKWE-DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--E 220 + L+ L + L + + +R++ + P G R Sbjct: 138 AWPDLWLNQLTDRPDSP----KDRELGLLYDRYQQRMLAWDKYDPEGRFWLARRELTNGR 193 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 +++ G + ++ +A + + ++ + Sbjct: 194 WDAFPELQLVVVDGFSDFTTTQQEMLLLLA--------------DHAREVLLALPGETGS 239 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + S +L I+ + + P + Sbjct: 240 DRPELFSRSGGTAAALRATAKRRQIETAVW---------NGQKQEQTVLASRPIGLQTLA 290 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398 + + V + A + E +A A++ L + ++ ++ Sbjct: 291 RNLFKNVRRIIPAEVAEGVHCVAALGHQAETREVARAVKQLLLDGVPAEEISVTCRQPEE 350 Query: 399 ARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAK 456 + + G+ I +P+S+ + +++L I + + + L++H PL+ Sbjct: 351 YAALVDSVFSDAGLPYQIDRTLPVSSLPLARAFSAILGTIQEDWSYATLKKLLRHTPLSW 410 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + V N + L++L + + Sbjct: 411 ADWDNAAQR--CRNVLHVLRLLNLQGGRLEILRTLQSLASRAEVERDAEENETFNDRSAL 468 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 A + + + + PL + L+I + + Sbjct: 469 YREAHETLAKLDEQLRPLAKSGSYSEQVGRLLAIGRELFTDNQSKEKTEQETPTSASGRS 528 Query: 577 FEEEGKTLSSLFSKIIE------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 +E + L+ + + E + + ++ + + + + P+ ++ + I Sbjct: 529 WESQWDLLAGMLRESAEFQDRLSKPPGRRVSWADFTEWLEDQFQSQMLPPEKARAGHVLI 588 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH---- 686 L ++R L+ L + GL EG +P + PF S + N + A + Sbjct: 589 LNAEQARHLDVPYLFVMGLQEGSFPSRQGQPPFYSEQERRQWNQTGINLIVEGARYQEEM 648 Query: 687 -DFEMANGT--RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR-------- 734 F R L T S P AS + Q + L + + Sbjct: 649 LLFYRLVTRAQRQLTLTYSRVNSTGGPLYASPFYQAVRELFTAESLGEQQVGSLSPVPEQ 708 Query: 735 --------------------GQCYLDWTRKLDYTTKQPHYKRPKPFP------------- 761 L W + H R Sbjct: 709 NELLTASDCRLRSVVEMGGKDAALLSWWASQPDLSPSFHSLRAAARMNSHRFETPGFTAY 768 Query: 762 --------------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 T+S S ++ + PY + IL LD + + D Sbjct: 769 EGLLEAGDNRRWLQQRFPADYTFSASRLEGYASCPYRFHLDHILGLDPVQSPRLATDHRR 828 Query: 808 RGTLFHNIITELIKKRINKNTPE-INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RG + H+++ L + +T E + +Q++ FE+ + + ++ Sbjct: 829 RGNVVHDLLAGLYDSADDSSTAEGLADRFQQMVVEAFERTLSRSELRQALDEVEQQLLTE 888 Query: 867 FLEHEEKIQ------------SSIEKIFVNIPAK--------------MAIESIG--IHL 898 + + + S + + +A + + Sbjct: 889 WADLYDAQAESYYDQYAADWVSPPRPQYRELTFGREDATSEQNESFPPVAFGDGEDVVLV 948 Query: 899 TGFADRIDL--LKSGFVD-ITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQID 953 G DRID+ L G V + DYKTG+ P K E + QL+L A A+ D Sbjct: 949 EGRIDRIDVGELAEGPVFNLIDYKTGEPPRMKAEQLSRGTQLQLALYAVAITRLKLVGED 1008 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSA--DELSEKSLKNLIEIVTLL----QNGEQP 1007 + Y +++K + +T KK++ +E+ + + L ++ + ++G+ P Sbjct: 1009 AV-PYLIGYWGIREKGFVPQLTKSGKKWTPLSEEMLREWEQTLDRLLPHMVACLRDGQFP 1067 Query: 1008 FISHLRLSEKSNIQSEYDHLARVA 1031 E Y + R+ Sbjct: 1068 ---VFNEDEHCVSFCPYRMVCRIG 1088 >gi|154685513|ref|YP_001420674.1| hypothetical protein RBAM_010790 [Bacillus amyloliquefaciens FZB42] gi|251764577|sp|A7Z367|ADDB_BACA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|154351364|gb|ABS73443.1| AddB [Bacillus amyloliquefaciens FZB42] Length = 1166 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 114/1041 (10%), Positives = 262/1041 (25%), Gaps = 151/1041 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + I + S + ++ P V+ + L +LI Sbjct: 44 TFLMEYELAKTPDIGGMIRAQVFSFSRLAWRVLQHTGGMNR---PFVTTTGVQMLLRKLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 +++ + ++ + + ++ + + ED+ + Sbjct: 101 EEHKHE-------------FKVYQKASDKTGFTEQVERMLTEFKRYCIEPEDVRRMAESG 147 Query: 177 YGMWWL------LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 + L I + L + L+ + + Sbjct: 148 TASEYRGERMLSEKLHDLGILYQQMERSLA--GHYLHSEDYLTLLAQQIPLADVVKGAHV 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P R++ + H D + + ++ Sbjct: 206 YVDGFYQFTPQELRVLEQLIMHAEHVTFSLTADSPSAEQAPDELDLFRMTGSTY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L+ K L + Sbjct: 260 ---YKLYQTAKELNADIS-CKELHGTKR------------HQHAPELACIESQYDVRPAA 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL 406 +++A N R E IA ++ + + + LI + +K Sbjct: 304 AYTGGQEAFTVMQAQNRRAELEGIAREIQSLVRDGGYRYKDMAILIRQPEDYKDLLKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLS 465 +G+ I + + S L+ + + A+ K L PE+ + Sbjct: 364 ADYGLPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIR 423 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + LE + + V R + + + + E + Sbjct: 424 EQVDQLENYCIAYGIKGERWTSGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETKEWMAA 483 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR--KLPNLWFEEEGKT 583 +++ + KT ++ + T + + + E + + Sbjct: 484 PLVKLQNRMKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQRAEEAGNMIEAQQHGQAWDA 543 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + L + + + + ++ + +F+ SR+ Sbjct: 544 VIQLLEEFAGMMGEDEISLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSC 603 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLKTAEKYIGQAAHDF-EMANGTR-- 695 + G N+GV P +N LS + + L +A + H MA + Sbjct: 604 TFVIGANDGVLPARPDENGVLSDDDREWLKAVGVELSSAGRERLLDEHFLIYMALSSPSD 663 Query: 696 HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTD---------------------------- 726 L + + + T+ S + RL L Sbjct: 664 RLYVSYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQYLVNKQVAQ 723 Query: 727 ---------FFDNLKKRGQCYLDWTRKLDYTT---------------KQPHYKRPKPFPP 762 + + + + + + +RP Sbjct: 724 TYTASQLRLWTREYEISDVWWSAYNVLMKEPDHRRAKKLFSSLFFRNEAKRLERP-VSRQ 782 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L + S S ++ ++ +A L+L F D D G LFH+ + + + Sbjct: 783 LYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFF--KLDAPDIGQLFHSSLKLISDR 840 Query: 823 RINKNTPEINH----------LMKQIIDSHFEKENLPPHIDIIW-RHLFHKISHSF--LE 869 + + + + +KE L + + KI + Sbjct: 841 LREQKLEWRDLTKDQCRNFSYEAVERLAPKLQKEILLSSNRHFYVKEKLQKIVTRVSGIL 900 Query: 870 HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916 E S + + + + + L G DR+D +S + I Sbjct: 901 SEHAKASGFVPVGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960 Query: 917 DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 DYK+ + Q+ ++ A + Y + D + Sbjct: 961 DYKSSDRGLDLAEVYYGLALQMLTYLDLSITHSEDWLGMKATPAGVLYFHI-----HDPM 1015 Query: 975 TNDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1016 IQASLPMGLDEIEQEIFKKFK 1036 >gi|15604268|ref|NP_220784.1| hypothetical protein RP403 [Rickettsia prowazekii str. Madrid E] gi|81554846|sp|Q9ZDC8|Y403_RICPR RecName: Full=Uncharacterized protein RP403 gi|3860960|emb|CAA14860.1| unknown [Rickettsia prowazekii] gi|292572014|gb|ADE29929.1| RecB family exonuclease [Rickettsia prowazekii Rp22] Length = 870 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 138/727 (18%), Positives = 250/727 (34%), Gaps = 113/727 (15%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P+ ++++ E +N +EA IA K A++T D L + L + Sbjct: 204 PSYNHMSNNISYSEPNNIYQEAKQIAYI---CELNKDKHIAIVTNDNKLKKVYCNFLDQK 260 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 ++ G L T ++L +++ I D + L+K+PL A Sbjct: 261 YSDLL---GNDLRLTNIGALLNAIIKIICNDFDLKLLFLLLKNPLINCH--------AVQ 309 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 LEL+ N+ L L EE +E V L+D + Sbjct: 310 KLELMLSNKNRFISSPKYLLQL------------------QFDDEEIREYCVNLIDILF- 350 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 T +I+D LT + + PN+W +E G L + Sbjct: 351 --------------TNNPHNITDILILTQQIAEKLL-------PNIWEQEGGTVLIEFLT 389 Query: 590 KIIETGSCIKANAI-EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 +I I ++ I + L+ K SS + I + L FD +IL Sbjct: 390 NLISYSKHINLTNKKDFPKIFSFLLSNIK-HYKNIDSSRIIIGQPEDLALCRFDLIILPH 448 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK-YIGQAAHDFEMANGTRHLIYTRSLRENN 707 N W N +P LS+ LN+ + + F + + ++ + + N Sbjct: 449 FNNEHWSSNAKPHPLLSKKALQILNIDYDDAITTTLYSDYFNLLLQNKQIVILNAKKYNG 508 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 + A RL + F+ K+ ++T Q +K P Sbjct: 509 KLSAACNLFLRLQLKYVIPCFECDIKKKLFTPAINSLDEHTKPQDDHK---LTTISNTFP 565 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826 S ++I+ LI +PY YA++IL L + ++P +D G H ++ + K + Sbjct: 566 SVLSVTDIETLIRNPYGFYAKKILGLHKKDNIWEEPKISDFGNFIHKVLEKYSKNYDKQY 625 Query: 827 ---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 N + + I ++ LP + W+ S +F+ + + + + +KI+ Sbjct: 626 VYLNLHDKQAALINIGNNILYSTILPAYTKKTWQIKLTAFSKTFILFDIERRKNCKKIYF 685 Query: 884 NIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 I ++ I I + G ADRI++ KS ++ I DYKTG P K+ + + PQL +E Sbjct: 686 EIKGELRLNIAGQDIKIIGIADRIEVSKSNYITILDYKTGTIPTKKEIEFGLSPQLIIEG 745 Query: 942 AALKAGSF--SQIDCRKVANL-------------------------------------FY 962 L F + + + Y Sbjct: 746 LMLIENGFNIESFNNLETSQFSNIHFCKGNFICSTEQMVNPSYLNHYKSSYINTKLTIAY 805 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 +++ + + E K LI ++ + F + + Sbjct: 806 VKITS---TEPYIQTIEIDLNIETLHKHKVGLIRLLEYYVT-NKSFS----YDFNLSNYN 857 Query: 1023 EYDHLAR 1029 +Y HL R Sbjct: 858 DYWHLTR 864 Score = 62.2 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ V I +P +L+ + K LP Sbjct: 7 FLQNFAEYIIDQLKKGI------------EVQIILPNNFLCLKLKKILTDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II + +K +D +S I+ L L+ +I ++ Sbjct: 52 IIIPFNFIFSKKNESDY---------ISKIEELFILSSIITEYKA--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP + ++ A+ L + + + + ++ +W FL+ W Sbjct: 88 -LPFNLEESLKAAEILRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEYCFLTWK 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 + + + ++ L++ E + K + II+AG Sbjct: 144 KTIALTQKYTKTIHKFNLLQEEIIKIKK-RENRIILAGI 181 >gi|311743791|ref|ZP_07717597.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272] gi|311312921|gb|EFQ82832.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272] Length = 1050 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 110/1032 (10%), Positives = 272/1032 (26%), Gaps = 116/1032 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ + + + + D V + +++A +E+R+ G + Sbjct: 48 PGTGKTTTLVELVADRIGHDEVQPD--------QVLMLTFSRKAAEEMRARVAARLGGTA 99 Query: 73 TILPIIKSLGDVVEEKFT--ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + + AD ++ ++ LA L+ Sbjct: 100 APV-RAMTFHAWCYALVRQFADPEEFAAPPTLMTAAEQDAVLAELLAGH----------- 147 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P + + A + + + + + +DL L + W AD L+ Sbjct: 148 DPSTWPAGLRPALRTRGFATEVGGFLSSLASGGRTTDDLRRLAADLDRPAWARVADALEE 207 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + A V L EA ++ +++ + ++ + Sbjct: 208 YGAVTDAQNLTDYAELVVRASALLDDPEASAAVRHDLRLVVVDEYQDTDTLQVEVLRKLV 267 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 ++ D + + + + + + L R Sbjct: 268 GPAQ--QLVAVGDHDQSVYGFRGADVANMARFTDHFEGAE---------VRALRTTRRFG 316 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 R+ R+ + + + +V ++ E Sbjct: 317 PRI---------RAAATAVLPPGQPGGLPVEVVRQHRDLACVAASEGEVEILTFATPAAE 367 Query: 371 AISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLH 426 IA LR E + A++ R+ L + +++ PL Sbjct: 368 VEHIAQLLRREHLEGGRPWSDLAVLVRTSAQLDRLHRALVAADVPCEVAGDEIPLVAEPA 427 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +L L A +L + + H L + R +++ Sbjct: 428 VRVLLGALGAADRLARGEELEPELAHTLLTGPLAGMDAPDLR-----SFARRLRDTDRET 482 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + L+ ++ H +R E A LV + + Sbjct: 483 PSRVLLARAVSGLHAGDHELDPAARRLAELLARAADLVQR----------REPPEQVLWE 532 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +DW + ++ D +L + + E + Sbjct: 533 LWDGTDWPRRLDLAWESGGADRAAADRDL----DAVVALFHHAARSEERHTRRTVQAFLA 588 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 D+ ++ + + + + + + ++ ++ L + +++ G+ E +WP TA+ L Sbjct: 589 DLRSQQLPADRLADSTARPAAVRLMTAHRAKGLEWPVVVVAGVQEDIWPNLTARPSLLRP 648 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLG-- 723 + + ++ + + + ++ + SR++ L G Sbjct: 649 DLLDGSPVTARDRLHEERRVLYVALTRAGERLVVTAVDPGSAEAEGPSRFVAELAAAGSD 708 Query: 724 ---GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------------------------- 755 G + R L P + Sbjct: 709 HGFGVESRLGRPSRPMSLRSVITALRRCAADPDPEVRASAAGLLARIAGHGSPNARVAHP 768 Query: 756 ----------RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 R + Q S S I + + + Sbjct: 769 DTWWGLVDPTRSEAPLRDPEQSLGLSGSSITSITGCSLKWFLS-----SEANGSRGSSTA 823 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 G + H + +++++ + + T + E R H+ Sbjct: 824 QGFGLVVHAVAADVVRRGLERPTAAELQAHLDAVWHRLGHETAWIGER--ERAEAHQALA 881 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924 F + A++ ++ + L G DR++L G V I D+K P Sbjct: 882 RFATWHAANARTPLAAEHEFRAELVVDGETVVLRGSMDRVELDAEGRVHIVDFKNSKHAP 941 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 + PQL + A+ + L +R+ + + + Sbjct: 942 AAAEVLQH--PQLGVYQLAIATEGIEGHHEVGGSELVQLRIPAGSATPDAPKVQVQPAPA 999 Query: 985 ELSEKSLKNLIE 996 + + + +L+ Sbjct: 1000 DPTASFVHDLVR 1011 >gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119867471|ref|YP_937423.1| UvrD/REP helicase [Mycobacterium sp. KMS] gi|108768793|gb|ABG07515.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119693560|gb|ABL90633.1| UvrD/REP helicase [Mycobacterium sp. KMS] Length = 1051 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 111/1018 (10%), Positives = 269/1018 (26%), Gaps = 127/1018 (12%) Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILI 118 + ++ ++ P+++++ + + P +++ ++ + L+ Sbjct: 76 VTRRLLDGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 D + + A L D++ L L Sbjct: 136 DLED-----GDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRR 190 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 W A F + + + + + A G + G+ Sbjct: 191 PEWAAAGRFAQAYEQ--------------IMLLRSAVGMAAPQATTPALGAAELVGAALE 236 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A + + G +++ P A + + + Sbjct: 237 AFAMDADLLAAERNRIGLLLVDDAQHLDPQAARLVRVLAAGADLTVFAGDPDQSVFGYR- 295 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KCFS 357 ++ + + R + N + Sbjct: 296 -----GADPALLRTEEGSAIVLTRSHRCAPAVARAMSGIARRLPGPRPEFVGNEDGRGDG 350 Query: 358 DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413 VA+ A E+ IA ALR + + + + ++ + + LT G+ + Sbjct: 351 SVAVRVAATAHAESALIADALRRAHLVDGVPWSEMAVIVRSLPRAGAPLARALTAAGVPV 410 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D+ A PL + L ++L A L+ P+ + R Sbjct: 411 DLPAAAPLVEEPAARALLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRAD 470 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + + + ++D T S +S E + + + Sbjct: 471 GSQPPREFTDLLVD-------------ALTGPLPAASDVSAELQRPLRRVRSVLAAARRS 517 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + +++ S + + + + +L ++ + Sbjct: 518 VDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGAQADRDLDAVTALFDVADQYVTRTA 577 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 S +D + L + + + +L + +D +++ GL EG+ Sbjct: 578 GASV-----RGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDLVVVAGLQEGL 632 Query: 654 WPKNTAKNPFLSRVMQ-----------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 WP + L SD A + R + + Sbjct: 633 WPNTIPRGGVLGTQRLVDVLDGVTDSASDAVSTRAPLLAEERRLLIAALGRARRRVLVTA 692 Query: 703 LRENNI--PTIASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--- 756 + ++ + S + Q L L R L + + Sbjct: 693 VDSDSGAEAMLPSPFCQELTALATDPGDGPPAPVRAPRVLAPSALVGRLRAVVCAPDGAV 752 Query: 757 ------------------------------------PKPFPPLEAQPRTYSFSEIKQLIN 780 +P E Q T S S ++ L + Sbjct: 753 DDAARECAAAQLARLAAAGVPGADPGQWHAMTALSTDEPLWNDEQQVVTLSPSTLQALTD 812 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P R D + G+L H +++E + ++ + ++++ Sbjct: 813 CPLRWLLERHGGRDGRDVR------SAVGSLLHALVSE-----PGRTESQLLNDLERVWA 861 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG----- 895 + + +F + + + + ++ I + Sbjct: 862 DLPYEAQWHAD---NELTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADDGRPA 918 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + + G DR++ +G + + D KTG +P + QL++ A+ AG ++ D Sbjct: 919 VRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKD-DAQRHAQLAMYQLAVAAGLLAEGDVP 977 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 L Y+ K T ++ E + +++ E Q F++ + Sbjct: 978 GGGKLVYL---GKSGAAGPTEREQDALTPETVAQWRQDVGEAAAATQGP--GFVARVN 1030 >gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231] gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19] Length = 1074 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 115/1044 (11%), Positives = 265/1044 (25%), Gaps = 181/1044 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGDVVE------------EKFTA 91 + T++A Q+L + + + L I G++ + + Sbjct: 63 RILGLTFTRKAAQQLSQRIRGRLEQLAGMDALRDIDPSGELSYKLEAIAPTVSTYDSYAG 122 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 L+ Y L PV RL+ L I + + + L ++ + Sbjct: 123 SLIREYGLLLPVEPTSRLITETELFQIAYDIVINYSGSLDTQTQPVNA---------TEK 173 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYG--------------------MWWLLAADFLKIA 191 L ++ I+ +D+ + + + Sbjct: 174 LLSLVSEIDNHIVSPQDIVEETDAFLSVLDDVEAASKRGLNQILIGWKQRQIIRKQMLPM 233 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 + L N + R E + +++ + A L+ Sbjct: 234 VAMLKQHLAYNNLMTFGEQMSLAARLAEENPQVGASQRDRYSVVLLDEYQDTGHAQRVLL 293 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ + GA V D W T + + L + Sbjct: 294 RSLFS---GAAVTAVGDPMQSIYGWRGATSANLERFREDFA---------------LGEE 335 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + L + ++ + ++ +V L + Sbjct: 336 PAQKRELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPS 395 Query: 367 EREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +E +A L + + +A++ + + + LEL G+ ++I L Sbjct: 396 AEKEREFVADQLAEAYKNRGESFTAAVLVRKKRHSAPIALELQSRGVPVEIVGLSGLIDI 455 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++ + + D + ++ P G + + A + + Sbjct: 456 PEVADLIAIAAMLIRPQDTKSALRILAGPHVGLGAADILALADRAANLAGRGKAEREEKK 515 Query: 485 IMDLKSLVLDRIATQKNNTH-----VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 L+ L T ++ A D L+ + L + Sbjct: 516 TDPLERLEQIIAETLPKAPESVVGLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELR 575 Query: 540 NKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+ D + V E + + S + Sbjct: 576 YLRTHSLGHSLPDLFADIERVFGIRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPN 635 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + ++++++ DG +S + IL +++ L + + + + + Sbjct: 636 ATLSQFLDYLELSRSQGDGLEPGEVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKT 695 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKY-----------------------------------I 681 T+ + S L E Sbjct: 696 TTSTWLSNESAVPSALRGDAREDDSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEE 755 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-------------------------- 715 A + + + + + + Sbjct: 756 ENARLFYVALTRAEERVLVTASTDITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDAL 815 Query: 716 ---LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT--- 769 L + V + +D ++ +++ E + Sbjct: 816 EPPLPEIGVFPQELRPEGADAVKAAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPV 875 Query: 770 --------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + S+I L DP +ARR + RGT FH + Sbjct: 876 VPVELGLELTASDIVNLSQDP-QAFARRRRRPVPFKPNSY----AKRGTAFHQWLENRFG 930 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + E+ ID + + FL+ E + Sbjct: 931 ATALLDADELPG-----IDDALDG------------TELETLKARFLDSEWADR---TPE 970 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +V P +++I + G D + G + D+KTG P + ++ + QL++ Sbjct: 971 YVEHPFEVSI--GEHIVRGRMDAVFRDADGRWIVVDWKTGQPPTEAAERRSVSLQLAVYR 1028 Query: 942 AALKAGSFSQIDCRKVANLF-YIR 964 A ++ +V LF Y+ Sbjct: 1029 LAWAR--LQGVEPSEVQALFHYVG 1050 >gi|83589345|ref|YP_429354.1| ATP-dependent deoxyribonuclease subunit B [Moorella thermoacetica ATCC 39073] gi|123525009|sp|Q2RL78|ADDB_MOOTA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|83572259|gb|ABC18811.1| ATP-dependent deoxyribonuclease subunit B [Moorella thermoacetica ATCC 39073] Length = 1151 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 112/944 (11%), Positives = 227/944 (24%), Gaps = 122/944 (12%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-----KYGMWWLLAA 185 L L A + + LA I ++ DL + + Sbjct: 102 AHRDDLGLFAPLAGSPGFIEQLAHTIAELKLYRVTPADLDRILERYRETGREQTILARKL 161 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 L + + L + L+ + + G G P + Sbjct: 162 RDLALVYRELETYLA--GRYLDPDDYLTLLAGRLPEAAFIRGARVWVDGFNGFTPQEEAV 219 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + V LD + + + L +L + Sbjct: 220 LQALMAVAEQVTVTLCLDPTLRHRRLGETELFHPTGETY---------HRLRQLALAAGV 270 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + ED L F + + + + L+ A Sbjct: 271 RVEDDVCLAGTPPR-----------FREAPALAHLEAHFGRWPLRPFRGDAAGIRLVAAA 319 Query: 366 NEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 N R E + A + E ++ + L+ + F I + I P+ Sbjct: 320 NRRVEVEAAAREILRLAREENLSWRQMAVLVRDLEPYHDLIVNTFRDFNIPLFIDRRRPV 379 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + L A+ + + + +K L E L E L Sbjct: 380 GHHPLVELVRAALEAVLEDWAYDPVFRYLKSDLVPVPREEIDLL------ENYVLAHGIR 433 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D + + + +E A + + Sbjct: 434 GRRWRDSRPWQYGNSRDLETPSPPGSAAGETINAIRERASCHLRRFDGALRGRQLTGREI 493 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + +L + E+ + L L +++ Sbjct: 494 TAALFDLLQELGVPERLAAWSRQAAAAGDLDAAQEHEQIWEGLMDLLEELVLALGDTSLE 553 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 E+ I+ ++ ++ + SR + G+ EGV P ++ Sbjct: 554 LEEYAAILDTGLESLKLRLIPPALDQVVAGTLDRSRQPELQAAFVLGVGEGVLPARLPED 613 Query: 662 PFLSRVMQ---SDLNLKTAEKYIGQAAH-----DFEMANGTRHLIYTRSLRENNIPTI-A 712 S + L+ A + H + R+L + L + + Sbjct: 614 ATFSDREREELRAAGLELAPTGTLRLFHEEFLAYLALTRSRRYLWLSYPLADAEGKALSP 673 Query: 713 SRWLQRLLVL--------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-- 756 S ++RL L GG D L Q R L P + Sbjct: 674 SPLVRRLRQLLPGLREETAGTELPGGDDDLVYLTTPRQAAGHLARLLGRGRPLPPLWQEV 733 Query: 757 ------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 P+ L +P S S+++ P+ + Sbjct: 734 YRWLHQDARGQKMLGLLEGGGYRNQVDPLEPELARGLYPRPLRLSISQLETFAGCPFRYF 793 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EINHLMK 836 L L D G +H + +++ + I + Sbjct: 794 LSYGLGLQERR--LYQVDPAGMGQFYHAALKLFVEELGRRGLDWGRLSDNEAAAIISQVV 851 Query: 837 QIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMA--- 890 + + E L R + +E +E + + V Sbjct: 852 DSLAPALQHEILSSSARYGYLRKKLEQTLQRVMEVLNEHARRGEFRPLAVETSFGCRGKL 911 Query: 891 -------IESIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSL 939 + L G DRID+ + + + DYK+ + QL L Sbjct: 912 PPLQLDAGPGRRVFLEGRVDRIDVARRQGRPYLRVIDYKSSPTTLDLTAVYYGLALQLPL 971 Query: 940 EAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYS 982 A + + + A + Y ++ K+ + Sbjct: 972 YLRAALDAAPELLGEAAEPAGMLYFAVRNPLIRQRGPVGKEAAA 1015 >gi|52079564|ref|YP_078355.1| ATP-dependent deoxyribonuclease subunit B [Bacillus licheniformis ATCC 14580] gi|52784928|ref|YP_090757.1| hypothetical protein BLi01156 [Bacillus licheniformis ATCC 14580] gi|319646647|ref|ZP_08000876.1| AddB protein [Bacillus sp. BT1B_CT2] gi|81386041|sp|Q65LK0|ADDB_BACLD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|52002775|gb|AAU22717.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus licheniformis ATCC 14580] gi|52347430|gb|AAU40064.1| AddB [Bacillus licheniformis ATCC 14580] gi|317391235|gb|EFV72033.1| AddB protein [Bacillus sp. BT1B_CT2] Length = 1166 Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats. Identities = 120/1041 (11%), Positives = 271/1041 (26%), Gaps = 151/1041 (14%) Query: 58 QELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 L E + TI + S + ++ P ++ + L RLI Sbjct: 44 TFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTGGMNR---PFLTGTGIQMLLRRLI 100 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 + + + ++ + + ++ + + + + Sbjct: 101 EEHK-------------GEFKVYQNASDKSGFTEQVERMLTEFKRHCLPPQSIRDMMEGT 147 Query: 177 YGMWWLL------AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 + L I E L + L+ + + + + Sbjct: 148 GKSEYEDERILSDKLHDLYILYSKLEENLENQYV--QSEDYLTLLAEQIPYAEEIRNAAV 205 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + G P ++ + H D N + + Sbjct: 206 YVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKPFTANSPNDLHLFRMTGKAY------ 259 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Y L + L + +V+ + +K E Sbjct: 260 ---YDLYQKAKELGLDPSEVR-------------LEETKRHRHHPELQHLERYFDERPAK 303 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLEL 406 + +++A N R E IA + + + + + A+I + + +K Sbjct: 304 PYPGQTESLRIMQASNRRTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVF 363 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 + I + ++ S L+ I + A+ VK L K R Sbjct: 364 KDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRYEAVFRCVKTELLFPEGQPKERLR 423 Query: 467 A-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH---WQSRLSEEDKELAVL 522 + LE + V R A+ + + E K V Sbjct: 424 EQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGWIVP 483 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + + T + + L +D + + + R + E+ Sbjct: 484 PIHRLQKRLKKAETVREMAEAVYLYLEEADVPMKLEQ-ERRLAEEGGRIAESRQHEQVWD 542 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + L + +E + + + +I ++ +FI SR+ Sbjct: 543 AVIQLLDEFVEMMGTERISFALFQQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTK 602 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQ-------SDLNLKTAEKYIGQAAHDFEMANGTR 695 L G+N+G+ P A + LS + + L E+ + + + + Sbjct: 603 CTFLIGVNDGILPARPADDGVLSDEDREWLKRNGAQLAATGREQLLDENFLIYMTLSSPS 662 Query: 696 H-LIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQ----------------C 737 L + + ++ T+ S ++RL L L + Sbjct: 663 EKLYVSYPIADSEGKTLLPSTVVKRLNELFPDSEEKMLIHEPEQLDDEAQLEFLVNKGIA 722 Query: 738 YLDWTRKL---------------------DYTTKQ--------------PHYKRPKPFPP 762 +L + + Sbjct: 723 LSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRD 782 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L + S S ++ P++ +A LKL F + D G LFH+ + + + Sbjct: 783 LYGEHIQGSVSRMETFKACPFSHFASHGLKLKERQFF--KLEAPDIGQLFHSALKLISDR 840 Query: 823 RINKNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LE 869 + ++++ ++ L + + KI + Sbjct: 841 LHELKLDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSNRHHYVKQKLQKIIARVSGIL 900 Query: 870 HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT--------GFADRIDLLKSGF---VDIT 916 E S + + + K + + L G DR+D +S + I Sbjct: 901 SEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV 960 Query: 917 DYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 DYK+ + Q+ ++ + A + Y + D + Sbjct: 961 DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHV-----HDPM 1015 Query: 975 TNDKKKYSADELSEKSLKNLI 995 DE+ ++ K Sbjct: 1016 IQASVPLGLDEIEKEIFKKFK 1036 >gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R] gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1070 Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats. Identities = 125/1051 (11%), Positives = 273/1051 (25%), Gaps = 170/1051 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90 V T++A Q+L + + + P I G + + + Sbjct: 65 QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 123 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L+ Y L PV RL+ L I RN + + +L + Sbjct: 124 GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 175 Query: 151 NLADIIDIIETEEKKWEDLHAL----------------KNEKYGMW---W---LLAADFL 188 L ++ ++ ED+ + + W +A Sbjct: 176 -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243 K E L + + + + +++ + + Sbjct: 235 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 294 Query: 244 RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+S++ + G V D W T + + + Sbjct: 295 VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 343 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 R L + + S T ++ P +V+L Sbjct: 344 DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 403 Query: 363 EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418 +E +A + + ++ +A++ + + + ELT+ GI ++I Sbjct: 404 WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 463 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 L + L SL + + D A ++ P G + + + + Sbjct: 464 SGLLDIPEIADLISLATMLVRPQDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 523 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + L L + + D + L + L T Sbjct: 524 ERREKNSDPLAELDAIIEEATAVEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 582 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 S++D T R+ P+ L ++ G Sbjct: 583 RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 642 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +++ ++ +G +S + IL +++ L +D + + + + Sbjct: 643 LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 702 Query: 659 AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688 + + ++ D E + + Sbjct: 703 STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 762 Query: 689 EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735 + ++ + T + L+ L G + K Sbjct: 763 VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 822 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769 + R +P PR Sbjct: 823 GVFPQLLATDSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 882 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + +++ + N+P ARR+ + RGTLFH + + + Sbjct: 883 LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 937 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 E+ + + D F + + +FL + + FV P ++ Sbjct: 938 ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 977 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 I + G D + G + D+KTG P I QL++ A Sbjct: 978 TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1031 Query: 950 SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979 ++ +V F Y+ F+ + + ++ Sbjct: 1032 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1062 >gi|332704301|ref|ZP_08424389.1| hypothetical protein Desaf_3201 [Desulfovibrio africanus str. Walvis Bay] gi|332554450|gb|EGJ51494.1| hypothetical protein Desaf_3201 [Desulfovibrio africanus str. Walvis Bay] Length = 973 Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats. Identities = 142/1003 (14%), Positives = 278/1003 (27%), Gaps = 144/1003 (14%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V I F + LL L I P R + L E Sbjct: 4 VVLIPWQEHFIHRLRDYLLETYG-----------QGLRDSVIVFPHARPARYLTLALAEA 52 Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 G K+ ILP + S + V + L + R+ L +I Sbjct: 53 AGGKAVILPRMLSESEWVHQLHARLHRLPARQP---GQLDRVGLLYEVIEQQHAT----- 104 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 +P+ LA++I+ ++ EDL + ++ W + Sbjct: 105 ---GQGLLSRMPMDRKALFPWCLRLAELIEEFLRAGRRPEDLPGM-EDEVQPWAAALLER 160 Query: 188 LKIASKYWTERLVELNASSPVGYQIA-LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 L + + E N ++P RA+ + ++ ++P + Sbjct: 161 LSGIFDTYLRIMEERNLATPGMESWRVAQRADEAASLLAQSRAPVVLAGFYALPGAHERI 220 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 A ++ + + H A LL ++ Sbjct: 221 FRSVWRRGLATLVW------------HTDPALAEGKCGHWSAQAH-----ADLLKRWGVR 263 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 E + R + + K Sbjct: 264 AELYPAAADEEQPASIRFHQGFDLHSQLTALRDELQENQDAKETT--------------- 308 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 +A+I D + V L +++++ G PL+ T Sbjct: 309 ---------------------DTAVIIPDEGMLVPVLHHLP--DRDVNVTMGYPLTRTSL 345 Query: 427 SSILTSLLNAIF-----KLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNK 480 +L ++L + + L++HP K E+ R +R + Sbjct: 346 YDLLETVLRLQETSEGPGRYYWREVINLLRHPYLKMLRLDEREPLRLAFHAMEEEVRRGE 405 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D + L + + E ++L ++ L + T Sbjct: 406 KYLDPLAL------------PVPDTAYPEGLEPEAVEDLRQEVLHACLTAFENIETLAG- 452 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ + ++ L+ D R + + T S Sbjct: 453 ---------LASALRGLLSILRTYGSDLWRIFLIDAECLDRVLRGVIPELESSTISEQSL 503 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ R + V + + + L ++G LE+RLLNF L + E P A Sbjct: 504 PRDTIFSLLRRYAREKRVAFEADPITGLQVMGFLETRLLNFRKLYVLDATEEKIPGAPAG 563 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY------TRSLRENNIPTIASR 714 +P L ++ L L + + +A+ F + + + SR Sbjct: 564 DPLLPDPLRHRLGLPNSRERDYVSAYTFYRLVRASKQTLILYQSGVQPGGILDGKALRSR 623 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCY---LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ++++LL +K L R L L S Sbjct: 624 FIEQLLWEEERKSGRIIKPGQPPLSVSLPTVRPLTLHGHGLAKAEALQDRLLGRLQGKVS 683 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + + P + + + L + +D D + G L H ++ E ++ + P Sbjct: 684 SSLLDCYLGCPLRFFYQYLTPLKAVEEVGEDGDPMELGNLVHEVLREFLQPYKGRPLPAG 743 Query: 832 N---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + + + + R + + + + +P + Sbjct: 744 ALDPAALSGLFLERLRQAPFYLQLGQDGRLSLERTGPHRMALFARGTPETLIRELELPVR 803 Query: 889 --MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--------------QKL 932 +++ L G DR+D + G V I DYKTG P A + Sbjct: 804 ASFSLDGREYLLEGRLDRVDEREGGDV-ILDYKTGSPPSPSQALFLDEELWTRMDSWRSG 862 Query: 933 IDPQLSLEAAALKAG--------SFSQIDCRKVANLFYIRLKQ 967 DPQL E +A ++QI R + ++ L+ Sbjct: 863 SDPQLLGELSAAVGSLQMPTYLYLYNQISGRTASEAAWVSLRD 905 >gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032] gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 1070 Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats. Identities = 125/1051 (11%), Positives = 274/1051 (26%), Gaps = 170/1051 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVV------------EEKFT 90 V T++A Q+L + + + P I G + + + Sbjct: 65 QVLGLTFTRKAAQQLSQRIRKRLETLAGV-PRLKDIDPTGQLEKNLQAITPTVSTYDSYA 123 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L+ Y L PV RL+ L I RN + + +L + Sbjct: 124 GTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTEY-------- 175 Query: 151 NLADIIDIIETEEKKWEDLHALKN--------------------EKYGMWW--LLAADFL 188 L ++ ++ ED+ + + W +A Sbjct: 176 -LLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATA 243 K E L + + + + +++ + + Sbjct: 235 LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHPQVGYSQRRRFRVVMLDEYQDTSHSQR 294 Query: 244 RLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+S++ + G V D W T + + + Sbjct: 295 VLLSSLFGGTDPGLTVNAVGDPMQAIYGWRGATAANLENFVDDFPV-----------IHL 343 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 R L + + S T ++ P +V+L Sbjct: 344 DGKTRAPKNELTTSWRNPPEVLTLANAVSREVLGSPDAPTRTVQPLQPREGAPTGEVSLG 403 Query: 363 EADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAG 418 +E +A + + ++ +A++ + + + ELT+ GI ++I Sbjct: 404 WFGTAAQEREFVADEMVKHWNAREEKGTFTAAVLVRKKRHSAPMAEELTKRGIPVEIVGL 463 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 L + L SL + + +D A ++ P G + + + + Sbjct: 464 SGLLDIPEIADLISLATMLVRPHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSR 523 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + L L + + D + L + L T Sbjct: 524 ERREKNPDPLAELDAIIEEATAIEPEAVVGLA-DAVADLGEGDRFSEEGLSRLKRLATQL 582 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 S++D T R+ P+ L ++ G Sbjct: 583 RYLRKYSLGRSVADIFADIETVFNIRTEVLSRQDPHADGAAGTVHLDKFAEEVASHGGIG 642 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +++ ++ +G +S + IL +++ L +D + + + + Sbjct: 643 LPELLDYFELAKDQEEGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKA 702 Query: 659 AKN----PFLSRVMQSDLNLKTAEK--------------------------YIGQAAHDF 688 + + ++ D E + + Sbjct: 703 STWLKNVTMIPSSLRGDAGTGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFY 762 Query: 689 EMANGTRHLIYTRSLRENNIPT---IASRWLQRL----------LVLGGTDFFDNLKKRG 735 + ++ + T + L+ L G + K Sbjct: 763 VGITRSERVLLVTGSALDESGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAE 822 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKP--------------------------FPPLEAQPRT 769 + R +P PR Sbjct: 823 GVFPQLLAADSSGADLVRGPRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRE 882 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + +++ + N+P ARR+ + RGTLFH + + + Sbjct: 883 LTATDLVSMKNNPEQF-ARRMRRPVPFKPNTY----AKRGTLFHQWLEDRFGSTALLDET 937 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 E+ + + D F + + +FL + + FV P ++ Sbjct: 938 ELPGIDEDYSDDAFIE-----------------LRDAFLGSTWENR---TPEFVEHPFEV 977 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 I + G D + G + D+KTG P I QL++ A Sbjct: 978 TI--GEHVIRGRMDAVFHT-DGTWMVVDWKTGRTPTGPEMDAAII-QLAVYRLAWAR--L 1031 Query: 950 SQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979 ++ +V F Y+ F+ + + ++ Sbjct: 1032 KGLEPEEVRAAFHYVAHDHTFEPNDLPTQEE 1062 >gi|311029444|ref|ZP_07707534.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus sp. m3-13] Length = 1171 Score = 199 bits (506), Expect = 2e-48, Method: Composition-based stats. Identities = 111/960 (11%), Positives = 251/960 (26%), Gaps = 139/960 (14%) Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHAL-----KNEKYGMWWLLAADFLKIASKYWTE 197 A + + +I + E L ++ + A L + + Sbjct: 114 AEQFGFIEQMESMITEFKRYCVTPELLQDEIVRIGEDASISEHEKMLAKKLTDILVVYRQ 173 Query: 198 RLVE-LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + L+ + + K I I G P ++ + H N Sbjct: 174 LEATLEGKYLDGEDYLQLLAEKIPNSSYIQKADIFIDGFHSFTPQELEVLKELMKHANSV 233 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D + T+ L + + E+ L + Sbjct: 234 TVALTADKPYDEEAPYDLHLFRETGTTY---------QRLKDIALEEGCELEEPVLLKDT 284 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + S+ + + + SDV++++A N R E IA Sbjct: 285 PRFQHADSL-------------RHMEQYFDVRPTVVYPEKSDVSILQAVNRRAEMEGIAR 331 Query: 377 AL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + R + K + ++ + V + I + + +L S Sbjct: 332 EIVSLVRDKDNRYKDIAVIVRNAESYIDLVNTVFKDYDIPFFVDQKRTMLHHPLVELLRS 391 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSL 491 L I + + ++ VK + + + LE L + + Sbjct: 392 SLEVISRNWRYESVFRCVKTDFFYSLDQDINEMREKTDKLENYCLSYGIQGHRWTATEPW 451 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SI 550 R +T P+ Q+ ++ L I++ + L + ++ Sbjct: 452 KYRRF--FSVDTEGPYVQTDEEVAYEKEINELRTMIVEPLHMLEKRWKKAKTIDAYCKAL 509 Query: 551 SDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 ++ + + +E E+ K + + +++E + + Sbjct: 510 YEYMEDLKIPQKLEARMKKAEEEGNLSSAKENEQVWKAIIQMLDQMVELIGEHPISLSMF 569 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ ++ + + SRL + + G+N+GV P F+S Sbjct: 570 MKMVESGLESLRFSLVPPAIDQVIVANFDLSRLTDIKHSFVIGVNDGVIPAKIKDEGFIS 629 Query: 666 RVMQSDL-----NLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPT-IASRWL 716 + L L H + + HL + +L + T + S ++ Sbjct: 630 EEERELLSNYGMELAPTSLERLLDEHFLVYTSFLSPSHHLYISYALADEEGKTLLPSSYI 689 Query: 717 QRL----------------LVLGGTDFFDNLKKRGQCYLDWTRKL--------------- 745 +R+ L + + + +L Sbjct: 690 KRIKEMFPSLEEKLLLNEPAELTSEEQLRYIHTPSTTLSNLAVQLQTWMKKYPVEPIWWD 749 Query: 746 ---------DYTTKQPHYKRPK------------PFPPLEAQPRTYSFSEIKQLINDPYA 784 ++ K R L S S +++ ++ Sbjct: 750 VYNTLLESEEWQDKTEQVLRSLFYKNEAKKLKQKVSRELYGNFMEASVSRMEKFSACAFS 809 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHL 834 +A LKL + D G LFH + + K ++ + Sbjct: 810 HFASHGLKLKERK--IYRLEAPDIGQLFHAALKHISDKLRQSGNDWKNLTKQDCEVLAKE 867 Query: 835 MKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK--- 888 I+ + E L + I + + S + + + Sbjct: 868 AVHILAPKLQGEILLSSNRFHYIKRKLETIITRASQILSDHSKASKFTPVGLELGFGKQE 927 Query: 889 ------MAIESI-GIHLTGFADRIDLLKSGF----VDITDYKTG-DNPKKETAQKLIDPQ 936 + + + + L G DR+D G + I DYK+ + Q Sbjct: 928 ELPPIQINLPNGVTMELVGRIDRVDK-AEGSRGLLLRIIDYKSSNKALDLTEVYYGLALQ 986 Query: 937 LSLEAAAL-KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + A + Y + + + D + E+ K+ Sbjct: 987 MLTYLDIVISHSKGWLGSEATPAGVMYFHV-----HNPMIKTNGMKPEDIIEEEIFKSFK 1041 >gi|291302042|ref|YP_003513320.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] gi|290571262|gb|ADD44227.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] Length = 1040 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 127/1018 (12%), Positives = 269/1018 (26%), Gaps = 121/1018 (11%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 LVE+ + A + + +R LR + + + +P + S + Sbjct: 54 AVLVESVAARVKEGVDPADMLVLGFGRRGAARLRRDISARLARTGSEVP-VYSFPALAFA 112 Query: 88 KFTADLLLSYNLNP-PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A P + ++ + + L+ Sbjct: 113 VLRAAANRHDAPAPQLLKGPEQDVIIRELLA------------HDAVEWPEAVRPALGTR 160 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A L D++ L L E W+ AADF+ R + A+ Sbjct: 161 TFAAQLRDLLLRATERGISAPRLARLGREHDRPEWVAAADFMTRYVDVLALRSLTGGATY 220 Query: 207 PVGY--QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 + A + + + PA L+ VA GA ++ D Sbjct: 221 DSAEIVRAAASELADDPELVPPPKFTFVDEVQDLDPAQLELLRLVAG--QGANLVAFGDA 278 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 T + + + V+ RS Sbjct: 279 DSATFGFRGADVRLLREFGDRFPTADG-------------------DPAPEVNLATCHRS 319 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + +R TD + P + V + + ++A IA LR++ Sbjct: 320 ASALLNATSLVAKKLRGTDRFRARAPRPEVGAGQVEVAALRSAAQQAAYIARQLRVAHLR 379 Query: 385 NK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439 + + ++ + V+ L G+ ++I+A LS L +++ Sbjct: 380 EGVAWSQMAVIVKSAAEHLPVVERALRHAGVPVEIAAIDQALSARPIVRHLLTIIQCGLN 439 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + G R + L +A + + Sbjct: 440 PKSLDEDTAVALLHSVYGGADSLSERRLRQELRRLAHAADVFRSPG-------ELLVEAL 492 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 ++ + E L++ + + ++ + L+ Sbjct: 493 RDPAELTALPEEPWAEPPRRIAGLMECVRSATGSVEDVL---------WAVWERADLSRR 543 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + + R + + TL + + A+ + ++ +++ +T Sbjct: 544 LARRAVSRDSRAVAADGDLDAMMTLFDWAADFADRLPGAGAD-VFAAHVLEQVLPADTRA 602 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----- 674 + + T+ +L ++ L +D +++ G+ EG WP + + + Sbjct: 603 AQARRGETVQLLTAHSAKGLQWDLVVVAGVQEGTWPNLRPRGSIMGSEALVETVTSGTVV 662 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 T + + F +A + + SR+++ L + +R Sbjct: 663 DTMTLLLDEERRLFYVAATRARDRLIVTCVADEDENQPSRFIEELGITVERPA---RLER 719 Query: 735 GQCYLDWTRKLDYTTKQPHYKR----------------PKPFPPLEAQPRTY-------- 770 +L P +R P P R Sbjct: 720 PMTLPSLVAELRLAACGPAGRRKDAAIAQLSVLAKQAVPGADPEEWWGLRPISDHAPLIL 779 Query: 771 -------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S S ++ + R + + G L H Sbjct: 780 PGERVKVSPSTVELVEQCGLRWMLERHGGTEPSG------LPQEIGNLVHA------AAE 827 Query: 824 INKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 T + M + H K P + F E + + Sbjct: 828 AAAVTDDPRQAMADFVAQHLAKLPFEAPWKAKQDSERVRSMVDKFASWLESNNRDL--VA 885 Query: 883 VNIPAKMAIESIG----IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQL 937 + + L+G DR++ G + + D KTG P A+ +PQL Sbjct: 886 AEKRFTVKLPDGPPGVTTELSGAVDRLERDLHGRLHVVDIKTGKTPISAAEAET--NPQL 943 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A++AG+F++ + + K + S D+ S K L Sbjct: 944 AAYQVAVEAGAFAEHG-LEAGGATLVYPASSTKAASVREQPALPSVDDPSWAHRKVLK 1000 >gi|323697652|ref|ZP_08109564.1| hypothetical protein DND132_0232 [Desulfovibrio sp. ND132] gi|323457584|gb|EGB13449.1| hypothetical protein DND132_0232 [Desulfovibrio desulfuricans ND132] Length = 974 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 128/950 (13%), Positives = 273/950 (28%), Gaps = 129/950 (13%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 V I + F + + +T+ P R + L+ Sbjct: 4 VLLIPWQTDFMPVLADKVAAS-------------DAPGKLTVLFPHNRPRRHLKGLLAAH 50 Query: 68 TG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 ++ +P + S+ D V L +L P L+L ++ L Sbjct: 51 PAMQRPAFMPEMTSIADFV-------AGLHRDLAPAPPVRANQLDLVEMLRRIVADLRGR 103 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 K L P + LA ++D + ++ + +DL + + + + Sbjct: 104 RKGLLARLPELDREP---FLPWGMLLARLMDDLLRQDLEPQDLEYM-EGEVSAYAAALLE 159 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 L+ + L R +A + L Sbjct: 160 QLRAIHTEY------------------LARLDARGWTTPGLSARFV---------LDHLD 192 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ G Y+L+ D L Sbjct: 193 EAAETLRGRTLLAAGF-------------------------------YALSGTEDRLFRD 221 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK---CFSDVALIE 363 + L + + + + + + + ++ D+ E Sbjct: 222 LWERGILTPLLHSDPALAEGGRAHWATAEHTAWLARWGVRPELVPGLDTTPRAPDIRFCE 281 Query: 364 ADNEREE-AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN--IDISAGIP 420 + + A + + +++A++ D V L +IS G P Sbjct: 282 GFDRHSQLAGLTGDMGELLARDTLERTAVVLPDEGALLPVLHLLPEVDPELEPNISMGYP 341 Query: 421 LSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ T + ++ +LL + + L++HP + E R + Sbjct: 342 LARTSLARLIETLLVLRENRENSRCYWKDVVALIRHPYLRLLGSENRPLRPVFQFWEAII 401 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 R D + + D + E LL + + +C+T + Sbjct: 402 RRGDKFLDPLAWEPDWDDDALKDVDR--------------AEAGPLLAEVLDRCLTGFAS 447 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 T ++ L + L + L L + + Sbjct: 448 ATTLAQLGEALAGLAAMLHARGEKLWHTYLLDAECLFRLTNSVIPQLKGAEICF------ 501 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + ++ R++D E V + + + L +LG LE+RLL+FD L + E P Sbjct: 502 -EPLDQSTLHAMLRRMLDQERVSFEPDPLTGLQVLGVLETRLLHFDKLFILDAVEERLPG 560 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLREN----NIPTI 711 +P L ++ L L A + + ++F G R + + ++ Sbjct: 561 TNPFDPLLPDPLRRLLGLPDAHERDNVSGYNFYRLLMGAREAVIYYQNGVQPGLLDQKSV 620 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHYKR-PKPFPPLEAQP 767 SR++++LL L L + + Sbjct: 621 RSRFVEQLLWERELSAGRLLTPEDGIVRTVTFPAGALPAGPEPVPATEGGRRALTAFLTA 680 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S + +N P + + + + + ++ DR++ G+L H+++ + + + Sbjct: 681 KGLSPSALDTYMNCPKRFFYQYLSGVRPVDSVDEEGDRSEFGSLVHDVLKKFLLPHVGTG 740 Query: 828 TPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + F L + + R + LE Q + + Sbjct: 741 EDLAGLDPAPLLTAFSETFRAGPLFARLPLDTRTALMEAGRYRLEQFVAAQQPATLLGLE 800 Query: 885 IPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 P + + + + I G DR++ ++G V I DYKTG + Sbjct: 801 QPLEGVLAQDGLDIPFKGRMDRVERRENG-VFILDYKTGGAQLPKARFWG 849 >gi|317125679|ref|YP_004099791.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] gi|315589767|gb|ADU49064.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] Length = 1053 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 119/1003 (11%), Positives = 262/1003 (26%), Gaps = 106/1003 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV-S 104 + + A LR ST + ++ + A+ L + P + + Sbjct: 62 ECLLLAAGRTAAGALRERVTARLAGTSTQS-LARTWQALGFGILRAEAALRGDPPPRLLN 120 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++ L L+ + D + L D++ + Sbjct: 121 GPEQDAILRDLLAGHASG------DAPGPAWPESVRDALATRGFRNELRDLLMRAVEHGQ 174 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE---- 220 ED+ L E W+ AA L+ + L A P + + Sbjct: 175 GPEDVLRLGVEHDRPEWVAAAQVLREYDEV--TALSRHGAYDPAWVLTSAADLLEDDPSA 232 Query: 221 -HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + +++ + A ARL+ V+ G ++ D + + Sbjct: 233 LARLHERLRLVVVDDAQEMTSAAARLLRVVSR--GGLRIVLLGDPDSAVQTFRGADPRFL 290 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + + L + V S+ Sbjct: 291 AHGWESLG------------VSRPGAVPRETVVLSVGHRLPAPVADVASRVVRRIGALGG 338 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADR 396 ++ + V + + +E IA LR + A++ Sbjct: 339 GEQRSVQPAPGR-----ATVDVALLRSVAQETSHIASVLRRAHLVEGVPWTEMAVVVRGS 393 Query: 397 NLARRVKLELTRFGINI-DISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKHPL 454 A ++ L + G+ + +A P+ +LT L A+ + V Sbjct: 394 GRAATLRRALAQAGVPVGAATAETPVRDENAVRPLLTLLGEAVRIARGPRHVLDPVTVTD 453 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + L V R L+ + + + + Sbjct: 454 LVLSPIGGSDTVGLRRLRRVLRREELADGGGRSSDELLAELVRNPLWAGRLGEVGRPAAR 513 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 LA + ++ T ++ + R + Sbjct: 514 VAGALAAGVEAALVGADGRWGAGVTAESVLWAIWQGAGVADAWRRQALAGGPGAERADRD 573 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L + F + + K I+ + + G+T+ + + + ++ Sbjct: 574 LDAVLGLFDAARAFVDRLPSAGPDKFV----EHILGQDVPGDTLLVGGQTGAQVSLVTPQ 629 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + + +++ G+ EGVWP + L D+ + + A Sbjct: 630 SAAGREWRLVVVAGVQEGVWPDLRLRGSILGSEDLVDVVGQRPVGFRAAQAAVRYDETRL 689 Query: 695 RHLIYTRSLRE------NNIPTIASRWLQRLLVLGGTDFFDNLKK-----RGQCYLDWTR 743 H+ TRS N S +L + G D ++ R Sbjct: 690 FHVAVTRSTERLLVTAVGNEDEQPSVYLDLVDPPEGGRLADEVRPHTEVSRPMSLPGLVG 749 Query: 744 KLDYTTKQPHYKRPKP-------------------------------FPPLEAQPRTYSF 772 +L P +P E +P S Sbjct: 750 ELRREVVSPDPGVAEPALALLAAAAAADVRGADPGRWWALRDVTTDQPVRREGEPVHVSP 809 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S++ + + GTL H+I+ E Sbjct: 810 SKVTYFSECGLRWFLTSVGGDGP------SLGAASVGTLVHDIVAE--------RPHATR 855 Query: 833 HLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + +D+ + + L + R H + ++ + E + E + + ++ + Sbjct: 856 EELVAEVDARWGRLGLRRGWVTERTRREAHDMVSRYVAYRESVAREWEPVGIETEFRVTV 915 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFS 950 + G DRI+ + G + I D KTG + P + + QL A+ + F Sbjct: 916 GRA--VVAGRVDRIERDRQGRLRIVDLKTGTSKPTQAELAQHG--QLGAYQVAVASQGFP 971 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 + + A + + + + + + + Sbjct: 972 TLGA-ESAGAALVFIGKGGLSGLRPAVLSQPALADSDDPDWAR 1013 >gi|119503959|ref|ZP_01626040.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium HTCC2080] gi|119459962|gb|EAW41056.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium HTCC2080] Length = 875 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 98/709 (13%), Positives = 207/709 (29%), Gaps = 87/709 (12%) Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR----------FGINI 413 + R E++++A +N +A++ D N R R + + Sbjct: 193 FPSRRAESMAVAKWAAQRHRDNAGSTAIVLLDFNRDRPELEYQLRQEFDCLGARYAALPV 252 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLND----FMAIATLVKHPLAKFGFPEKYLSRAKN 469 + S+G+PLS T L + + L++ P G ++ Sbjct: 253 NFSSGMPLSKTPMFRDALMALRVASAYDSVALLRSEVLALLRSPFLHGGEDLDGIALL-- 310 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 L+ D + + + H + E Sbjct: 311 -----------------QLRKACTDLTSEHIDKRDLNHLAETFAPEAH------------ 341 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 +T + ST G S W + + L+ L +L +++ + +L Sbjct: 342 -LTQVFKTLRTDRSTRGKRLPSRWLDVIRSVLRLWQWPGRAALDSLEYQQFERLEVALDE 400 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 +++ + + + I + + +D V + + + G E L FD L + GL Sbjct: 401 LVMQDCITGELSFQQVILLWEQCLDDR-VFQPKTEEGAVQVFGPQEVVGLRFDALWICGL 459 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 G+ P+ PFL +Q L L ++ +A + S R + Sbjct: 460 QSGLLPQRPQLLPFLPNWLQRHLGLLNSD----------SVALEASAVALLNSFRATHGE 509 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--PFPPLEAQP 767 AS + + + P + Sbjct: 510 VRASYASEHEGLEILPSHLARPIASDDSPTQQQAPKHWPEPSPLELLDEGNVVVGDADIQ 569 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 S I N P+ + L + +RG + H+ + + + + Sbjct: 570 WGGGASLISNQSNCPFRAWVSHRLGPADVAAPVFGLTPAERGNIVHDALRFTWEILKDSH 629 Query: 828 TPEI--NHLMKQIIDSHFEKENLPPHIDI-----------------IWRHLFHKISHSFL 868 + ++ + E+ + + +S+L Sbjct: 630 SLRAMNATQIESLTRESTERAVQALERRAERRHCNVRKRVGSACLDLEIQRVAALLNSWL 689 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKE 927 E E + + + I ++ + + L DRID L+ G + DYKTG Sbjct: 690 ELEAQREGNFSVIEQEDSHELTL--GSLILNLRPDRIDQLEGGRQVVIDYKTGAVHRSSW 747 Query: 928 TAQKLIDPQLSLEAAA---LKAGSFSQIDCRKVANLFY---IRLKQKFKIDCITNDKKKY 981 + D QL L A ++ +F ++ V +F + L K + + Sbjct: 748 LGDRPSDAQLPLYALLNDSVEGVAFGRVHQEGVEYVFLGEALGLGGKELPLEDQVKRYEV 807 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + E E+ + + L + + + ++ + R Sbjct: 808 APLESWEELRRTWRGRLERLADDFVRGHAAIDPQPQACRYCALGSVCRY 856 >gi|225574651|ref|ZP_03783261.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM 10507] gi|225038119|gb|EEG48365.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM 10507] Length = 1111 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 113/1016 (11%), Positives = 278/1016 (27%), Gaps = 139/1016 (13%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I VP + +Q + +++ + + S + F + + P + Sbjct: 35 VILVPEQFTMQT-QKRLVQMHPGGGILNIDVLSFERLAYRVFE---EVGGDDAPLLEETG 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + L L +++ + +LP + + + + + ++ + + E Sbjct: 91 KSLVLQKIVQDKKKELPYLGVQMKKPGCI-------------QEMKSLVSELMQYDVGEE 137 Query: 168 DLHALK-NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 L L + + + + E L E + ++ E K Sbjct: 138 TLGELVKRSEDQALLHCKLQDIHRIYEGFREYLKERFLT--GEEVPDVLCRVIEKSKKFQ 195 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 G ++ G TG P +L+ + V +D + + + Sbjct: 196 GGIFVLDGYTGFTPIQNKLIRELMLLGEQVYVTVTMD----------VKAQRLSGKYQLF 245 Query: 287 TYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + S + L KL + +++E G S + + L + + Sbjct: 246 SMSGKMRDQLLKLAGEARVAVEKEQWVLPGENSRFGKNPELNFLEQHLFRYHRVVYEREP 305 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 + + +V A I +R + + + + + Sbjct: 306 QALALTRWENPLQEVKGT--------AAEILRLVREKGYRYGEIAVITGDLPSYGTYARQ 357 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 ++ I I + L + + I + + ++ ++ E Sbjct: 358 VFSQAQIPYFIDEKHSILMNPFVEFLRAAVEMIVDRFSYESCFRYLRCGMSSLSLEEID- 416 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 L+ Y + L ++ + ++ + +E L Sbjct: 417 -----ELDNYVTALGIRGYSKWKETWVRLYPGLDEERILELNRYREQFLKEISWLVQGFR 471 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + + K + + + Sbjct: 472 GGVKTVRERSCALYQFISDNEMQEKL--------KIQELEFAGRKDKAMEKEYAQIYGIV 523 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L K++E K +A E+ ++ + V S + + +RL L Sbjct: 524 MRLLDKMVEILGDEKVSAREYQQLLEAGLTEAKVALIPPSSDQVLVGDMERTRLKEIKVL 583 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH-- 696 G+NEG PK++++ L+++ + A + +GQ+ + Sbjct: 584 FFLGVNEGNIPKDSSRGGLLTQMDREFFQEEKIELAPDARELLGQSRFYLYLNLTKPQDF 643 Query: 697 LIYTRSLRENNIPTIASRWL----------QRLLVLGGTDFFDNLKKRG----------- 735 L + S +++ +L RL G+ + G Sbjct: 644 LYLSYSQANAKGEGLSAAYLVGTIQKLFPALRLRCGQGSSLEGLQRPSGSLDYFLEGLQE 703 Query: 736 --------------------QCYLDWTRKLDYT---TKQPHYKRPKPFPPLEAQPRTYSF 772 + Y +L L + Y Sbjct: 704 YEYGQETKVWRELYRWYQKDESYRPQVNRLVEAFFSENPQDRISKAVAKALYGEVSPYGA 763 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---P 829 + ++Q +A + R L++ + + D G + H + +K ++ Sbjct: 764 TRLEQYAACAFAHFLRYGLQVTER--VQYEFSGMDLGNVMHKALEIFARKVRDQRLSWGE 821 Query: 830 EINHLMKQIIDSHFEKENLPP--------HIDIIWRHLFHKISHS--FLEHEEKIQSSIE 879 ++++ ++ + ++ + + E+ + + Sbjct: 822 LSREDRERLVSESLQEVTEDYGNTILHSCARNEYLIRRTQRVLNRTAWALQEQLRRGDFQ 881 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLIDP 935 + + G DR+D+ + +V + DYKTG+ + Sbjct: 882 PEGFEVAFEG----------GRIDRVDICEDENKVYVKVMDYKTGNVSFDLVALYHGLQL 931 Query: 936 QLSLE---AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL + A ++ + A +FY +K I D K L E Sbjct: 932 QLMVYLDAALLVEQKKYPD-REVIPAAIFYYNIKDPMIKASIEEDIGKVEQKILRE 986 >gi|126434058|ref|YP_001069749.1| UvrD/REP helicase [Mycobacterium sp. JLS] gi|126233858|gb|ABN97258.1| UvrD/REP helicase [Mycobacterium sp. JLS] Length = 1051 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 116/1022 (11%), Positives = 272/1022 (26%), Gaps = 135/1022 (13%) Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILI 118 + ++ ++ P+++++ + + P +++ ++ + L+ Sbjct: 76 VTRRLLDGGARQVVRAPLVRTVHSYAFAVLRLAAQRNGDAPPRLITSAEQDGIIRELLAG 135 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 D + + A L D++ L L Sbjct: 136 DLED-----GDRSAVAWPAALRPALTTAGFATELRDLMARCTERGVDPVALQRLGRLSRR 190 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 W A F + + + + + A G + G+ Sbjct: 191 PEWAAAGRFAQAYEQ--------------IMLLRSAVGMAAPQATTPALGAAELVGAALE 236 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A + G +++ P A + S + Sbjct: 237 AFAMDADLLAAERSRIGLLLVDDAQHLDPQAARLVRVLAAGADLSVFAGDPDQSVFGFR- 295 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFS 357 + + + S R E Sbjct: 296 -----GADPALLHMEEGSAVVLTRSHRCASAVARAISGIARRLPGQRQEFVGSEDGGGDG 350 Query: 358 DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413 VA+ A E+ IA ALR + + + + ++ + + LT G+ + Sbjct: 351 SVAVRVAATAHAESALIADALRRAHLVDGVAWSEMAVIVRSLPRAGAPLARALTAAGVPV 410 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 D+ A PL + L ++L A L+ P+ + R Sbjct: 411 DLPAAAPLVEEPAARALLTVLEATADGLTGAQAEALLSGPVGRVDPVTMRQVRRALRRAD 470 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + + + +++ T S +S E + + + Sbjct: 471 GSQPPREFTDLLVE-------------ALTGPLPAASDVSAELQRPLRRVRSVLAAARRS 517 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + +++ S + + + R +L ++ + Sbjct: 518 VDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGARADRDLDAVTALFDVADQYVTRTA 577 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 S +D + L + + + +L + +D +++ GL EG+ Sbjct: 578 GASV-----RGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDFVVIAGLQEGL 632 Query: 654 WPKNTAKNPFL----------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 WP + L S + + L E+ + AA R + Sbjct: 633 WPNTIPRGGVLGTQRLVDVLDGVTDSASDAVSTRAPLLAEERRLLIAAF----GRARRRV 688 Query: 698 IYTRSLRENNIPT-IASRWLQRLLVLG-GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + T ++ + S + Q L L D R L + + Sbjct: 689 LVTAVDSDSGAEALLPSPFCQELTALATDPDDGPPAPLRAPRVLAPSALVGRLRAVVCAP 748 Query: 756 R---------------------------------------PKPFPPLEAQPRTYSFSEIK 776 +P E Q T S S ++ Sbjct: 749 DGAVDDAARECAAAQLARLAAAGVPGADPGQWHAMTTLSTDEPLWNDEQQVVTLSPSTLQ 808 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 L + P R D + G+L H +++E + ++ + ++ Sbjct: 809 ALTDCPLRWLLERHGGRDGRDVR------SAVGSLLHALVSE-----PGRTESQLLNDLE 857 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895 ++ + + +F + + + + ++ I + Sbjct: 858 RVWADLPYEAQWHAD---NELTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADD 914 Query: 896 ----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 + + G DR++ +G + + D KTG +P + QL++ A+ AG ++ Sbjct: 915 GRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKD-DAQRHAQLAMYQLAVAAGLLAE 973 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 D L Y+ K T ++ + + +++ E Q F++ Sbjct: 974 GDVPGGGKLVYL---GKSGAAGPTEREQDALTPDTVAQWRQDVGEAAAATQGP--GFVAR 1028 Query: 1012 LR 1013 + Sbjct: 1029 VN 1030 >gi|260887199|ref|ZP_05898462.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185] gi|260863261|gb|EEX77761.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185] Length = 1151 Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats. Identities = 112/968 (11%), Positives = 244/968 (25%), Gaps = 139/968 (14%) Query: 45 ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 +++ + +P T RA + L + G Sbjct: 39 SALVLLLPEHATYRAERRL----AAMMAGAGEGFVRGLVFG-FKRFARHVLQETGGAAAA 93 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 ++++ + L L R++ L + A + L ++ + + Sbjct: 94 RITSVGKRLLLKRILAEEGESLQAFAR-------------AAKQRGFTQTLERAMEEMRS 140 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + L + L + + E++ + G + + + Sbjct: 141 YGIDGDALLQAQPALADDDLCRKLADLALIYSRYREKMA--GRYNDTGDMLDALAEKIPS 198 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + G + P ++++ + + D E + Sbjct: 199 SRLLEGAEVWVDGFSFFNPQERKILAALFQKAKNVHITLTFDP---------TDEAAMQR 249 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 S L +L + I + R S + + + Sbjct: 250 EGSLFYRQAQTLQQLRRLAQEMQIPVRV--------RSLEERRRFQSDALAAIERTAFSF 301 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398 + + + VAL+EA R E + A + E + A++T D Sbjct: 302 PLVPQ-------AGAAGVALVEAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAA 354 Query: 399 ARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + L GI + ++ S + + + A+ +K K Sbjct: 355 YGDMLALTLEDCGIPYFRDNKREGVHHPLAELVRSAFEVL-RGWRYDAMFRALKTGFFKK 413 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + L + D + LD S + Sbjct: 414 TRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSC--R 471 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + + T + + L D + R + Sbjct: 472 RAVAEPLQEFAAQVKAASTVRGYAEALYRLLLALDVPQTLERWADE-AEKAGRLAESREH 530 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + SL ++ ET E+ D++ +D + + + ++ Sbjct: 531 RQIWDDVISLLEQMAETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNS 590 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---SDLNLKTA----EKYIGQAAHDFEM 690 + N + + G NEGV P+ + + LS + + L+ E + ++ Sbjct: 591 VENARAIYILGANEGVMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFNERFLLYKG 650 Query: 691 ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRG----------QCY 738 R L + +L + + + L ++ + + G Q Sbjct: 651 FTEARDYLWVSYALADTEGKALLPASLLGQIRTVLPAVSLQTVPLEGAERRLFAGGRQAV 710 Query: 739 LDWTRKLD--------------------------------------YTTKQPHYKRPKPF 760 L + + K Sbjct: 711 TALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAA 770 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL- 819 + + S + + P+ +AR L L D G L H + E Sbjct: 771 LYTKNRRLRGSVTRFESFRACPFQHFARYGLHLAER--PAHGFRTLDLGVLLHAALREFG 828 Query: 820 ---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLE 869 + + EI H + ++ + E L + + L Sbjct: 829 ERLKKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALV 888 Query: 870 H--EEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRIDLLKSGFV-DI 915 E S + + + +TG DRID+ ++G I Sbjct: 889 RLIELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLI 948 Query: 916 TDYKTGDN 923 DYKTG Sbjct: 949 LDYKTGAA 956 >gi|313904429|ref|ZP_07837806.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6] gi|313470765|gb|EFR66090.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6] Length = 1155 Score = 198 bits (503), Expect = 4e-48, Method: Composition-based stats. Identities = 116/1005 (11%), Positives = 273/1005 (27%), Gaps = 148/1005 (14%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + + P + +I + L + ++I + KL + + L +S S Sbjct: 66 SFNRLAWRVFAEVGGDDLPVLEDIGKSLIVQKVIAARQEKLKVMERALGRPGAVSQMKS- 124 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERL 199 +I + + EDL + L + ++ + + + Sbjct: 125 ------------LISELMQYRVEPEDLDEWIRRGEAAHRGRLSLKLEDIRTVYTAFRDYI 172 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 E + + I++ G TG P +++ + + V Sbjct: 173 DEHYLTKEEV--PERLCHVIGDSTLVKDSVIVLDGFTGFTPVQHQVVRELLSLA--LKVR 228 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 L + +E H Y + + L + +E ++ Sbjct: 229 VVLTVPSSEELERGKSEHRLF----------HMSYEMYR--KVLGLAKESRC---EIAPV 273 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + + P + + + ++ + +A + +E IA + Sbjct: 274 RWIEAGEKGRFAGSPALAYLEQNLFRSRRREAYAGEQKEITVTQAKDPEQEIRMIAEQIL 333 Query: 380 MSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + A+++ D + R+ + GI + + T + S ++ Sbjct: 334 RMVRREGYRYRDFAVVSGDLSTYGRLAENVFSECGIPFFVDQKKAVMTNPMVEFIRSAID 393 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + + ++ ++ L + +E D R Sbjct: 394 MVVQNYSYDSVFRFLRTGLGDLS------REETDRMENYCRALGIRGRKKYDESWTRCPR 447 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + + + ++E +E + + +++ Sbjct: 448 YMDKDELLLYNEIREKFADETREFHEAMHRRNTTVKSKAEAVYRLLAGHGIQRKMAEMKL 507 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 V + + + L KI+E K ++ I+ + Sbjct: 508 CFQENGDAVSAG--------EYGQIYGAVIDLLDKIVEVLGEEKMKLADFQSILDAGFEE 559 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673 + + +RL L G+NEG+ PK A LS + L Sbjct: 560 INIGLVPPGEDQVMTGDIERTRLRKIRVLFFAGVNEGIVPKPVAAKGILSEHDRQILAGD 619 Query: 674 ----LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIAS-------RWLQRL 719 T+++ + Q ++ + L + S + S R RL Sbjct: 620 SVELSPTSKEQMYQQRFYLYLSMTKPSDRLCLSYSRSGVEGGALLPSYLIGVVKRLYSRL 679 Query: 720 LVLGGTDFFDNLKK------------------------RGQCYLDWTRKLDYTTKQPHYK 755 + + + G + + R L + + Sbjct: 680 EIRSAEEIYRKDPTLLLETPKGRMSLLLQGLQKIPDELPGADFNELLRTLWQSEEGREEA 739 Query: 756 RP----------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 + + L S + ++ + + L+L Sbjct: 740 QRLLSAVSTKNPAKGIGMQLARMLYGDKLQVSITRLEDFAECSFRHFLDYGLRLRERE-- 797 Query: 800 KKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLP------- 849 + + + D G++ H + K + + ++ D ++ Sbjct: 798 EYEFNAADYGSILHKALERYAKILGKREIRWGTLGDGERNRVADEALDEVAFDYGNTIMQ 857 Query: 850 -PHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKM--AI--------ESIGI 896 + +I H + E+ S E + + + + Sbjct: 858 SSQRNRHMLERIREILHRTVWALDEQIRMGSFEPTDFEFRFRTNEEVKSLHFSLEDGTEM 917 Query: 897 HLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952 LTG DRID + G I DYKTG + QL++ A+ Sbjct: 918 KLTGTVDRIDDCRTEGGHYVKIIDYKTGKTTLDLGQLYYGLQLQLTVYLNAVMECRQKAE 977 Query: 953 DCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 +V A +FY + + + + D+ E+ LK L Sbjct: 978 PGAEVLPAGIFYYHIDDPWI--------EPTAEDQRLEEILKKLR 1014 >gi|291613180|ref|YP_003523337.1| hypothetical protein Slit_0711 [Sideroxydans lithotrophicus ES-1] gi|291583292|gb|ADE10950.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1] Length = 869 Score = 198 bits (503), Expect = 4e-48, Method: Composition-based stats. Identities = 110/767 (14%), Positives = 239/767 (31%), Gaps = 66/767 (8%) Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 E+ + + + + L +++ V + Sbjct: 160 GEELDAGRAYQQRLAKLAEQARQPLFVLRTSDWCALEQRFLDEYAGRAAVEVFDLRKMDA 219 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 + + + +I + A + +EA + A+ +R+ L K+ A++ Sbjct: 220 QWGSLLHESSAGLRSQSIASLGGKLGFFAATSLEQEARAAAMQVRLWLQAGKRDIAIVAQ 279 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 DR +ARR++ L R I + G +T S++L L A+ + L+K P Sbjct: 280 DRVVARRMRALLERAEIMVADETGWTFATLSVSTVLDRWLTALQSDFYHHDLLDLLKSPF 339 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 A LE + + Sbjct: 340 IFADMTASERKSAVYQLEQLLRKQGVV--------------------------------- 366 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGN--LSISDWTKLTVTCLQNVCLDEHRKL 572 E LV+H PL + + ++++W LQ + +D Sbjct: 367 AGLEKFSALVEHETVLHQPLARLRQAAALLEQHKKRTLAEWLAALRESLQVLSIDSGLLQ 426 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + + G + + G EW + + + S + Sbjct: 427 DDAGMQLLGALETWQQELTADEGR---YRFPEWRRWLAQQL-DTQTYRDNSIDSQVRFTH 482 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 +R FD ++L G + P + + ++S LNL T + D Sbjct: 483 LAATRWRAFDAVLLLGCDADHLPSVADGGRWFNDAVRSSLNLPTRAINAERQRDDLLSLL 542 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + ++ N +L + + + + + P Sbjct: 543 ALNDCVLVTWQKDRNGEAGLLSPYLEILRDLHLLTWGDDLAESELPAYLAAEEARAVELP 602 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 +P P E P S S L+ PY YAR IL+L+ + ++ ++ D G Sbjct: 603 QSAQPAPVVQKEIIPTGVSISAYNSLVACPYQFYARHILRLNELDEVQEGIEKRDYGERV 662 Query: 813 HNIITELIKKRI---NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 H I+ ++ + + ++QI + F W + K +++E Sbjct: 663 HAILQRFHERYPRVSEHSRDTMEVALRQISEEVFADLLQQDFEARAWLARWFKALPAYIE 722 Query: 870 HEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKK 926 + ++ + +E G+ L G DR+D+ + DYKT + Sbjct: 723 WQMVNEAQGWRYVESESAFDWELE--GVRLRGRIDRLDMNGQQK-RVLDYKTQSDQVLRN 779 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + + D QL+ + A+ ++ ++ + + + + L Sbjct: 780 KLREPGEDVQLACY-----------AYAHEAADAAFLSIESGK----VKSVEPEGDVPLL 824 Query: 987 SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 ++ + + L++++ ++ G ++ ++ I E + R EW Sbjct: 825 AQLNAERLVQVMGKIR-GGTGLPANGI--DQVCIHCEMRGVCRKGEW 868 >gi|160895395|ref|ZP_02076165.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50] gi|156862966|gb|EDO56397.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50] Length = 1128 Score = 198 bits (502), Expect = 5e-48, Method: Composition-based stats. Identities = 123/940 (13%), Positives = 264/940 (28%), Gaps = 150/940 (15%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLVELN 203 + + ++ I K + + + E+ ++A ++ + + E Sbjct: 116 LGFVDEMKSMMSEIFQYNIKQDTIDEI-MEQISEDSVVAGKMQDIRHIYEEFEAFAGERY 174 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + L+ + G TG P L+ + + LD Sbjct: 175 IV--AEQLVELLTRHVGQSKLVCGSSLYFDGFTGFTPVQLELVEKLMTCADDLTFSFTLD 232 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + I + + T L + ++ E L N G Sbjct: 233 D--RDQKYEHIKDYELFYLTKTTIKK------LTEAAAAAGVEIESPVVLPGTINYRLGE 284 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + + ++ + ++ + L + ++E + +A +R + Sbjct: 285 NRELFFLER----------NLFRSPYQKWKQPLERIHLTATGDAQDEIVFVASTIRRLVR 334 Query: 384 ENK---KKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 E K A++ D A + + + I + I A L + + S+L + Sbjct: 335 EKGYRYKDIAIVAGDLEQASHIYERVMDEYEIPVFIDANACLKANPCAETIRSVLAVLAD 394 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + ++ +K + F + L RG + Sbjct: 395 DFSYDSVFRFLKAGMTDLSFEDIELLENYA-----LKRGVRGYSRWN------------- 436 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV- 558 V + S + E + I + K ++ + Sbjct: 437 ---RAVSENYEKTSPVNIEEIRQAFMKMFGDIRKVFADKKAVTKDYVEALYDFLLQIHMY 493 Query: 559 ---TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 +N +E+R + + + LF KI E K + E+ +I+ + Sbjct: 494 EKLEARKNELYEENRINEGDAYGQIFEKTVRLFDKIAELLGDTKMSVKEFYEIVDTGLSD 553 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS----- 670 V + I SRL + L +N+G+ PK K LS + Sbjct: 554 IEVGVVPPTVDRVLIGDITRSRLNHIKVLFFTSVNDGIVPKAPKKGRILSDRDRDILSDC 613 Query: 671 DLNLKTAEKYIGQ----------------------------------------------- 683 L L ++K Sbjct: 614 GLELAPSDKQNSYIEQFYIYTILTKPSDYLYISYHKLSASLESMRPSYLLGRISSIFPSL 673 Query: 684 AAHDFEMANGTRHLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 A +++ A+ + R LR + SR L R+L G +G+ Y + Sbjct: 674 QAEEYDAASCMPDTVNRSLRRILRAEDSEDAESRILTRILTEKGFAGELTAIYKGRTYRN 733 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 +L P+ L + S S+++ +A + + L+L Sbjct: 734 VAEQL----------PPETIALLYGRYLHASVSKLELYARCGFAYFLKYGLRLKEREM-- 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRIN------KNTPEINHLMK------QIIDSHFEKENL 848 D + G + H+++ L K+ + +N PE ++ + + Sbjct: 782 YQVDVRNVGVILHSVMEGLFKQVRDTRNNDWENFPEDERMLMVTELVNRAAEESAGDFFE 841 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAK----------MAIES-IG 895 + + +++ + +K S++ + + + I Sbjct: 842 DNARNAYMLQMIERMAQTSAGMLQKHIRLGSMKPGMLEKTFDSAKDEVGSYLFELPNQIQ 901 Query: 896 IHLTGFADRIDL-LKSGFVDI--TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ 951 + + G DR+D+ + G V I DYK+ E QL +A Sbjct: 902 MSINGKIDRVDVEEEDGTVYIKVIDYKSSARKLSLEEILNGEQLQLVTYSAIAYEIEKMI 961 Query: 952 IDCR--KVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + ++A L Y + E S++ Sbjct: 962 YPDKNIQIAGLLYYSFDDPVIEIESSEIDTDTEQPEFSDQ 1001 >gi|160934432|ref|ZP_02081819.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753] gi|156867105|gb|EDO60477.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753] Length = 1125 Score = 198 bits (502), Expect = 5e-48, Method: Composition-based stats. Identities = 107/922 (11%), Positives = 252/922 (27%), Gaps = 130/922 (14%) Query: 149 AKNLADIIDIIETE----EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 ++ L +++ E + EDL A + + + LV + Sbjct: 113 SRELVELMLSALKEFKMCGIRPEDLKAAADRLEEGNLRKKIRETGLVMAAYEA-LVSQSY 171 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 P+ L + E +++ G ++S V ++ +D Sbjct: 172 IDPLDDLTRL-KNVLEVTPFFKGYTVMVDAFAGFTAQELEVLSLVLRQAKETVISVCVDQ 230 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 N + + K + L +D + Sbjct: 231 D----------PAKDNGMGLFSP--------VKKTVRQLRRITKDYHIPLAPPIRLPHGK 272 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 ++ + R + ++P + L A + EEA +A ++ + E Sbjct: 273 RFQNEELKLLEQVIYRQERLESGEVP------GHIVLYNASDIYEEADFVARRIQKLVQE 326 Query: 385 NK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 ++ +I + R V L +GI + PL +++ S L + Sbjct: 327 EGYRYREITVIARETESYRGVLDAALESYGIPYFMDQPEPLEEKPLMTLVLSALECVQSG 386 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + L+K L + E L ++ R + + Sbjct: 387 YRSDELFRLLKTGLTELQTEEIAALENYALLWNLSGRRWLEPFTMH-------------- 432 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + ++ E L + +++ + + + + Sbjct: 433 -PRGFSPEMTEEDQKKLEGLNRLRETVMEPLAQFEESLRSGTGKGIAYGVYQLLERLNAA 491 Query: 561 LQNVCLDEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + L + ++ + W ++ ++ Sbjct: 492 QNIRRMADELENMGEWNLAQEQIRLWDMLMEILDQMALVLKEQHLSPRRWSELFQLVVQS 551 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DL 672 E + + + + G SR + L G EG +P+ S + + Sbjct: 552 EEIAFIPQGVDEVSVGGADRSRPAAPRAVFLIGAEEGEFPRTPVSAGVFSDAERRLMISM 611 Query: 673 NLKTAEKYIGQA---AHDFEMANGTR--HLIYTRSLRENNIPTI-ASRWLQRLLVLGGT- 725 L + A + MA + L + + + + S ++ + + Sbjct: 612 GLPLYDSLEKLAVEERYLAYMAAVSPSERLFVSYASSDLSGGARSPSSLVREVRKIFPEC 671 Query: 726 -------DFFDNLKKRGQCYLDWTRKL----------------------DYTTKQPHYKR 756 + F +L + + L D Sbjct: 672 PVADRSQEAFSDLLWSPEPAFELAASLWREPSEREETLKRYFGGLPEYQDRLEAVGRAAS 731 Query: 757 PKPFPPLEAQPR--------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 +P + S S+I++ + + R L D + Sbjct: 732 EEPIAFQNPENAQKLFGSNLRVSASQIEKYYLCRFQYFCRYGLGAKERKP--AVFDALEY 789 Query: 809 GTLFHNIITELIKKRINKNTP-----EINHLMKQIIDSHFEK-----ENLPPHIDIIWRH 858 G++ H ++ +++ + E+ +++++DS+ E E P + Sbjct: 790 GSVMHYLLENMLRAFSGETLASMKKQELLAEIRRLLDSYVETNLGGWEEKSPRFRYL-LA 848 Query: 859 LFHKISHSFLEHEEK--IQSSIEKIFVNIPAK---------MAIESIG-IHLTGFADRID 906 + L H K QS + + I G I + G DR+D Sbjct: 849 RLADTAQMLLSHLGKELAQSDFVPADFELSIGKGKELEPLVLEIPGGGQISVEGKIDRVD 908 Query: 907 LLK---SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +++ ++ + DYKTG K ++ Q+ L + S+ A + Y Sbjct: 909 VMEKPSGKYIRVVDYKTGSKDFKLSDVLYGLNMQMLLYLDTVWKNGKSRYGSVLPAGILY 968 Query: 963 IRLKQKFKIDCITNDKKKYSAD 984 + + + +K + Sbjct: 969 VPAARPSVSAQWGDSGEKLEKE 990 >gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] gi|296026993|gb|ADG77763.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] Length = 1094 Score = 198 bits (502), Expect = 5e-48, Method: Composition-based stats. Identities = 136/1059 (12%), Positives = 276/1059 (26%), Gaps = 154/1059 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEI-------TGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 SV I +KR+ LR E G ++ P+++++ + + Sbjct: 87 SVLILTGSKRSAVALRRELSARVLADRGRAGVHASGEPLVRTVHSLAFAVLRLQAAHAGA 146 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 P RL+ + + R L + D P A L D+ Sbjct: 147 PPP------RLITGSEQDAVVRELLRGHVDDGGAFWPER-LRPALVTGGFAGALRDLFAQ 199 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER----LVELNASSPVGYQIAL 214 E++ L W AA L+ + R L A +P L Sbjct: 200 AAQRGAGPEEIDELAARYDRPEWAAAAAALREYQQTTLLRGSVGLAGPTAVAPAVDAAEL 259 Query: 215 MRAEAEHL---------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + A L + +++ + P + L+ + ++ D Sbjct: 260 IDAAVTALAGDDALLAQQRERIRFLLVDDAQNLDPLASALIRLLGTGTELTVI--AGDPD 317 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + + L LD+ E L RS Sbjct: 318 QAINSFRGAST---------------------RFLQSLDVPAERDIVL--------ERSF 348 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--- 382 + + + A+ +EA +IA LR Sbjct: 349 RFGEEITATVNRVSSRLPNRFGSVAPERPRPGSAAVRLFSTAAKEADAIAAMLRREHVLG 408 Query: 383 -DENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL 440 + + ++ + ++ L G+ + ++A PL+ L S + A + Sbjct: 409 GVPWEDMAIVVRSVSASVAPLRRALAYAGVPVTVAADDVPLARQRAVHALLSTVRAACEP 468 Query: 441 --NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 D L+ P+ R + + + Sbjct: 469 ESLDPAEAVALLSGPVGGGDPLTLRRVRRAVRRADPSDERG------------SAEILGA 516 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + E + V V + T + S++ + Sbjct: 517 VVAGSVDFAPYRAALTELEAEPVERVLAAVHAARAAAVEGTVEEVLWAAWSVTGLSGRWG 576 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + +L ++ F+ + T S A IE+I+ + Sbjct: 577 ALALRGGSVGEQADRDLDAVMGLFDAAADFTDTLPTAS--PARFIEYIEQLHIPRASGGG 634 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD------- 671 + + + + ++ + +D + + G+ EG WP + L D Sbjct: 635 RRETPTTPGVTVVSAHGAAGREWDVVAVAGVQEGRWPNLRRRGGLLGTEELLDALDGIDP 694 Query: 672 LNLKTAEKYI----GQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGT 725 L T + + + + R + + + + + SR+LQ + G Sbjct: 695 AALPTVSRSLPLLAEERRLLLVACSRARRTLLITAVDTADGDGDLVPSRFLQGIAPSGEE 754 Query: 726 DFF------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--------------------- 758 D ++ L P + + Sbjct: 755 DPETYTPAVESEPAASLDLRTLVATLRAAACDPRREESERAHAARQLARLAADRVPGAHP 814 Query: 759 -------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P + P S S ++ L R D + Sbjct: 815 DSWYGLAGASTDDPLWQPDDGPVALSPSNVEALSACALRWMLERFGG------SDGDSAK 868 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 G L H L++ + + + + + E + R ++ Sbjct: 869 QATGNLVH----TLVQAVAGRIPKDEVTRSLEKVWDRVDLEADWFARRELIRT--EEMLE 922 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTG 921 SF +S + + V +P IE + + G DR++ G + D KTG Sbjct: 923 SFRAWLAGSRSELTEAGVEVPIDTVIEGTDGAPDVQIRGRVDRLERDPLGRTVVVDVKTG 982 Query: 922 DN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 P + Q QL A+ G + K K ++ Sbjct: 983 RTLPSQADGQAHA--QLRTYQVAIAHGGLGGVPETPGGGKLLYVAKPHNKTGATVREQDA 1040 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + + ++ L + E + E F + L S + Sbjct: 1041 LTPAD-VDEWLGVIREAARRTRGPE--FAATLNASCQHC 1076 >gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 1070 Score = 198 bits (502), Expect = 6e-48, Method: Composition-based stats. Identities = 129/1026 (12%), Positives = 269/1026 (26%), Gaps = 123/1026 (11%) Query: 46 SVTIYVPTKRAIQELRSEF------IEITGKKSTILPIIKSLGDVV-----EEKFTADLL 94 V T++A Q+L + +G + P +++ ++ + + DL+ Sbjct: 70 QVLGLTFTRKAAQQLEQRIRRQLLTLRSSGILAPGSPAAEAVENIAPNVSTYDSYAGDLV 129 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK---- 150 Y L PV R++ A I + + L +S ++ A + LA+ Sbjct: 130 REYGLLMPVEPNARIITEAERYAIAHEVVSNYTGSLSTDSAVATV--TATLLKLAETMDG 187 Query: 151 NLADIIDIIETEEKKWEDLHALKNE---------KYGMWW--LLAADFLKIASKYWTERL 199 L D D+ E E+ + L+ + + + Sbjct: 188 ELKDPQDLYEHEDIFRKTAEDLEKSKRTKGEFGKDLQKYLDTQRLRLEYLPLVEALKKEQ 247 Query: 200 VELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-ANHP 253 E + I++ + A L+ ++ Sbjct: 248 SERGVITFGEQMSIAATLAKNFPLLGEQQSARYRVIMLDEYQDTSHAQRILLRSLFGGER 307 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 G V D W T ++ ++ +L Sbjct: 308 EGLSVTAVGDPMQSIYGWRGATAENLEAFVTDFPQPDGTPAPKDQLTTSWR--------- 358 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + ++ S ++ P V L +E EE Sbjct: 359 ------NPSTVLSLANDVASKLFSLSPGERPVDELSPKPTAPAGKVELGYFASEDEERAF 412 Query: 374 IAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 IA LR + + +A++ + + L G+ +I L Sbjct: 413 IAEHLRRLYESTPEGEDFSAAVLVRTNRQSPLIAAALDEVGVPNEIFGLGGLLWQPEIQD 472 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L ++ + + D A ++ P+ G + ++ A G L Sbjct: 473 LVAVATLLVRPQDTAAALRVLTGPMCGLGIADIQALHSRQRNLAGATEGRTRWNGGDPLD 532 Query: 490 SLVLDRI---ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L A + E + ++ + + + L +T Sbjct: 533 HLATQVEEITAEGPDQVLGLADALADLGERDRYSAEGLERMEEVSSKLRYLRTYSLGKTL 592 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 N ++D L + + + + L + + A ++++ Sbjct: 593 NDIVADIELLFGLRTEVLASGKPGR---------ATHLDAFADFVAGFHGDGLAGLLDYL 643 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK------ 660 ++ DG + + + I+ +++ L ++ + + + + Sbjct: 644 ELAKEKEDGLELGEVPLVRNRVQIMTVHKAKGLEWEHVCVVHADSSSYKAQAETFLTKIE 703 Query: 661 ---------NPFLSRVMQSDLNLK-------TAEKYIGQAAHDFEMANGTRHLIYT---- 700 + V +SD + E +AA F +A T Sbjct: 704 KAPGDEDVIDVPEDAVTRSDFDKACTAFKEQNREFQAEEAARLFYVAMTRTESTLTVTGS 763 Query: 701 -RSLRENNIPTIASRWLQRL--------------LVLGGTDFFDNLKKRGQCYLDWTRKL 745 + + +LQ L + L+ L Sbjct: 764 GTNRLKGKSKKGPYSYLQLLADKHPELVGHWDIPETPVEEEEGSALQASFPSLSPQPEAL 823 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI-----LKLDFIPHFK 800 + P P + + E LI + A+ A + +L Sbjct: 824 NAAEAVRAAMEDLP-PLRDGEVFGLWEQEASALIEEHKALQAPVVDVELPGELTASDMVA 882 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 D T I + T L + E+ P H Sbjct: 883 MSADPTQFARRQRRPIPFKPNSYAKRGTAFHAWLEDRFGAPALLGEDELPGSHDEPDHDL 942 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + SFL E + FV P ++ I + G D + G I D+KT Sbjct: 943 ESLKESFLASEWAQR---TPAFVEAPFEITIGDS--VVRGRMDAVFQQPDGSWLIVDWKT 997 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 G P+ QL++ A A + I + + + + ++ Sbjct: 998 GRRPQGAALASA-QIQLAVYAEAWRR-----IHGVDTVRAAFYYVYENYLLEPDDLPAGA 1051 Query: 981 YSADEL 986 A+ L Sbjct: 1052 RLAELL 1057 >gi|90021649|ref|YP_527476.1| DNA helicase/exodeoxyribonuclease V subunit B [Saccharophagus degradans 2-40] gi|89951249|gb|ABD81264.1| DNA helicase/exodeoxyribonuclease V, subunit B [Saccharophagus degradans 2-40] Length = 935 Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats. Identities = 99/729 (13%), Positives = 214/729 (29%), Gaps = 67/729 (9%) Query: 361 LIEADNEREEAISIAIALRMSLDENKKK-SALITADRNLARRVKLEL------------- 406 LIE + E +IA +L +N ++ + R Sbjct: 218 LIECVDWETEIETIARWAHQTLRQNPSTQIGIVIPNLQKHRSQIECAFIRQFDNDYLLNP 277 Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 + ++S G PL+ + L + K L++ Sbjct: 278 TSSGADKPYELSIGSPLAEEPCIADALLLTQLLHKKLTKEEALDLIRSEFWGQN---TEA 334 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + ++ + +L S RI T + E+ K+ + Sbjct: 335 RLLALQGLNDWPMTSVDTIRLTELLSKAEKRIETANDL---------NKEQFKDGFIEAT 385 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 D + L L W L+ + +R L + ++ + Sbjct: 386 DEMTTSNRILEAI-QLYRLAAHKLDFQHWNGFLKRFLKTLNWPGNRTLNSREYQAVEQFK 444 Query: 585 SSLFSKIIETG---SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 L +++ ++ + + + + + + + + I GTLE+ L+F Sbjct: 445 LILDELLVDQRCFIGSNLVTFPAYVAHLRQRLSEKVFQQQTPRKP-IQISGTLEAIGLSF 503 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLI 698 D + +P++ N FL +Q + +K + A + + + Sbjct: 504 DKCWVANTTRSQFPESPQPNAFLPLALQKAFATPRSSPQKELDYAEQLLTIFSECANEVT 563 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 ++ S + S L + + Y + +++ P Sbjct: 564 FSYSKTAEDEHQQVSPLLPPMASKKLDEEQLAKNLYFDKYNTASAYRNFSVFSDLCGLP- 622 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 + + + +P Y L RG + HN++ Sbjct: 623 LKHSEASIKIRRGVNALSTYAVNPLYAYLVHRLGAKQPNPVYVGISPPQRGNILHNVLET 682 Query: 819 LIKKRIN--------KNTPEINHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKIS 864 + N +N ++ +I + E LPP + + + + Sbjct: 683 FWEATKNSAALKTKLENQAAFLAELEALISDNVNAELHKHLQYLPPQLLELEKERCLSVL 742 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL------LKSGFVDITDY 918 +L E I + ++ I ++ DR+D +G + DY Sbjct: 743 VQWLTLESYRAPFI-VAATENAYAIELKPISFNV--RVDRVDSPTSASGEPTGNSILIDY 799 Query: 919 KTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDCITN 976 KTG P L++PQL + + + + + + N ++ + + + Sbjct: 800 KTGSTPLSLLQRAPLVEPQLPVYTQLKELSASAVALGQLQPNNCTFVGIGEDAIQIDGVD 859 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLS--EKSNIQSEYDHL---ARVA 1031 K + +L + K L L + F L+ +S ++HL R Sbjct: 860 APSKLNKYDLPDTWEKVLDWWQQELMKSVKGFSEGNALNITTVKTYESRFEHLQPIVRKT 919 Query: 1032 EWREEYDIS 1040 E + DIS Sbjct: 920 EQEKMADIS 928 >gi|330839035|ref|YP_004413615.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185] gi|329746799|gb|AEC00156.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185] Length = 1144 Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats. Identities = 112/968 (11%), Positives = 246/968 (25%), Gaps = 139/968 (14%) Query: 45 ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 +++ + +P T RA + L + L + + Sbjct: 32 SALVLLLPEHATYRAERRLAAMMAGAGEGFVRGL--VFGFKRFARHVLQETGGAA---AA 86 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 ++++ + L L R++ L + A + L ++ + + Sbjct: 87 RITSVGKRLLLKRILAEEGESLQAFAR-------------AAKQRGFTQTLERAMEEMRS 133 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + L + L + + E++ + G + + + Sbjct: 134 YGIDGDALLQAQPALADDDLCRKLADLALIYSRYREKMA--GRYNDTGDMLDALAEKIPS 191 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + G + P ++++ + + D E + Sbjct: 192 SRLLEGAEVWVDGFSFFNPQERKILAALFQKAKNVHITLTFDP---------TDEAAMQR 242 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 S L +L + I + R S + + + Sbjct: 243 EGSLFYRQAQTLQQLRRLAQEMQIPVRV--------RSLEERRRFQSDALAAIERTAFSF 294 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398 + + + VAL+EA R E + A + E + A++T D Sbjct: 295 PLVPQ-------AGAAGVALVEAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAA 347 Query: 399 ARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + L GI + ++ S + + + A+ +K K Sbjct: 348 YGDMLALTLEDCGIPYFRDNKREGVHHPLAELVRSAFEVL-RGWRYDAMFRALKTGFFKK 406 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + L + D + LD S + Sbjct: 407 TRGQIDLLENYVLEFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSC--R 464 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + + T + + L D + R + Sbjct: 465 RAVAEPLQEFAAQVKAASTVRGYAEALYRLLLALDVPQTLERWADE-AEKAGRLAESREH 523 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + SL ++ ET E+ D++ +D + + + ++ Sbjct: 524 RQIWDDVISLLEQMAETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNS 583 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ---SDLNLKTA----EKYIGQAAHDFEM 690 + N + + G NEGV P+ + + LS + + L+ E + ++ Sbjct: 584 VENARAIYILGANEGVMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFNERFLLYKG 643 Query: 691 ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRG----------QCY 738 R L + +L + + + L ++ + + G Q Sbjct: 644 FTEARDYLWVSYALADTEGKALLPASLLGQIRTVLPAVSLQTVPLEGAERRLFAGGRQAV 703 Query: 739 LDWTRKLD--------------------------------------YTTKQPHYKRPKPF 760 L + + K Sbjct: 704 TALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAA 763 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL- 819 + + S + + P+ +AR L L D G L H + E Sbjct: 764 LYTKNRRLRGSVTRFESFRACPFQHFARYGLHLAER--PAHGFRTLDLGVLLHAALREFG 821 Query: 820 ---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLE 869 + + EI H + ++ + E L + + L Sbjct: 822 ERLKKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALV 881 Query: 870 H--EEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRIDLLKSGFV-DI 915 E S + + + +TG DRID+ ++G I Sbjct: 882 RLIELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLI 941 Query: 916 TDYKTGDN 923 DYKTG Sbjct: 942 LDYKTGAA 949 >gi|299822107|ref|ZP_07053993.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601] gi|299815636|gb|EFI82874.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601] Length = 1161 Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats. Identities = 96/936 (10%), Positives = 247/936 (26%), Gaps = 128/936 (13%) Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 L + L + A +A + I+ E + E + + ++ Sbjct: 101 LAEQDKLKIFQRAAMKRGFYGEIASLFKEIKQSELRTEAFAEVAP-ELTTSTADKLHDIQ 159 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + L + L+ + +II G ++ + Sbjct: 160 LLFDRYENMLA--GKYMESEDYLRLLTNSISRSTYIKQATVIIDGFDSFTEQELSVIGAL 217 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + ++ +++ + + H + L ++ + + + Sbjct: 218 MEGSESVRIAL------------SLPDETASNRLDAYSLFQHGKEYLDRITEMARQTQIE 265 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + + +K P+ ++ E+ + + + +A+N R Sbjct: 266 I---------LPRLHLESNKRTNDPELRELELLFSEESAPKRYVGENTSLHIHQANNRRA 316 Query: 370 EAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 EA IA +R + + K + L+ V + + ++ Sbjct: 317 EAEGIARKIRELVASRQFDYKDIAVLVRGVDKYETLVSRAFQGNEVPYFLDKKRTMADHP 376 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL------ELVALRGN 479 + S L A+ + + I ++ L+R + L E Sbjct: 377 FIEFIRSTLEAVQQNWRYENIFQAIRTEFFFDLETPNPLNRKQADLLENYCIENGIKAKW 436 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + V T + ++ + V+ Sbjct: 437 RWQKKGDWIYQKVKGLTIELAPQTDEELAMQETINTLRYRIQKPLEALETAFEDAVSGID 496 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + L + + E+ + + + +E Sbjct: 497 YGTALYRYLENVQAAERLEMWREQ-AEANDLLELAREHEQAWTAVMGMLDEFVEILGDDP 555 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++++T +D + + +RLL L + G N+GV P Sbjct: 556 LDFDTFLEVVTTGLDALEFSLLPPTLDQVIVSDMDVARLLRVKVLFIAGANDGVLPLRKK 615 Query: 660 KNPFLSRVMQSDL---------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 LS + + L + A+ + L + ++ Sbjct: 616 DGGILSDDDRVAISEQGVPIRSGLTSHLIEEEHLAYRLFT-TASSQLYLSYPAADDEGKL 674 Query: 711 IASR-----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + +L +L + D ++ + T +L + Sbjct: 675 LTESNYLRKIKAHFEMLTEEIYLNDPSLLPIREQSDYVRAKEATLSQLTAQLQLYKRGYP 734 Query: 754 YK------------------------------------RPKPFPPLEAQPRTYSFSEIKQ 777 R + L + S S +++ Sbjct: 735 VASVWWDAYNYFIRKSDWSAVVKHVLGSLFYGNRTQPIRSETAANLFGENIFASVSRMEK 794 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKN 827 + + +A+ LKL+ F D G +FH + + + Sbjct: 795 FFSCEFQHFAQYGLKLEERAEF--KLQAVDMGEVFHGAMEWISNEIKRRQQEWGSLTDLE 852 Query: 828 TPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSF--LEHEEKIQSSIEKIFVN 884 EI + + + E L ++ +I + +++ S+ + + Sbjct: 853 CQEIARDAIRYLAPKIQHEILLSTKRMAYIQYKLEQIIARATHVLNKQAKVSAFRPLGLE 912 Query: 885 IPAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQ 930 + + + + + G DRID+ K + I DYK+ + + Sbjct: 913 VDFGIKGQLPPMQIKLDKQRELLLQGRVDRIDVAKEEDRSFLRIIDYKSSSHDLRLTEVY 972 Query: 931 KLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965 + Q+ + + I + A + Y + Sbjct: 973 YGLALQMLTYLDIVVQNAQKLIGKQAEPAGVLYFHM 1008 >gi|167462208|ref|ZP_02327297.1| ATP-dependent nuclease, subunit B [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383646|ref|ZP_08057397.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151858|gb|EFX44801.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1200 Score = 197 bits (501), Expect = 7e-48, Method: Composition-based stats. Identities = 142/1083 (13%), Positives = 309/1083 (28%), Gaps = 157/1083 (14%) Query: 58 QELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN--------IQRL 109 + E +K P+I + D + +L+ S NL+ + R+ Sbjct: 16 RYCLDEIRNSLKQKPEGDPLIYLVPDQATFQAELELVSSDNLSGMIRAQVLSFHRLAWRV 75 Query: 110 LE----LARL-ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++ +ARL + KL E L S + +L + + Sbjct: 76 MQEEGGIARLPVDETGKKLLLHKLLHEQEKQLVYFQSTYEQLGFVDHLNRLFTEWKRYCV 135 Query: 165 KWEDLHA----LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 E+L L + + L + RL ++L+ + Sbjct: 136 TPEELGEYIGRLDGQNSSLVLQQKLQDLHHLYGAFESRLS--GEYLDGEDTLSLLAEQIP 193 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + G G P R++ + G V LD E+ Sbjct: 194 QSSFIRSATFWMDGFHGFTPQELRVVEALMKTSRGVTVTLTLDRPYY------AGERPDE 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + T T SL +LLD +I ++ L Y + +++ D Sbjct: 248 LDLFYPTGKTM--SSLQELLDQANIGPAELIHLQPKKAPRYEHTTMLAYLEQHYDKRIGI 305 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397 + + S + + A N R E A + + E + A++ + Sbjct: 306 GVC----TYSSDEDKESPLQIRAAVNRRAEVEGTAREILHLVREQGARWRDVAVLVRNME 361 Query: 398 LARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 R + + +GI + S L S L I + + A+ VK Sbjct: 362 EYRELIATTFSDYGIPHFFDQKRSVFHHPLSEYLRSALEVISRNWRYEAVFRCVKTDFLL 421 Query: 457 FG-----------------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSL--VLDRIA 497 + R + LE AL D + K + Sbjct: 422 PWPLPVEPDSEGEKLLKEREAIREQRRLLDRLENYALAFGIQGRDWTETKPWDKLFKVSL 481 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWT 554 +++ V +SR E+ + + +L + KT K + + Sbjct: 482 EDEDSEVVKQRESRELEQLNRTRNQIAEPLLALQKRMARAKTVKQRCEALYRLLLDTHVP 541 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + N L E + + ++ + +++E + + ++ ++ Sbjct: 542 ERLESWSMNCVL-EGKPEKAREHAQLWDSVIQMLDQMVEMMGEEVLSLDLFAKLVDTGLE 600 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-- 672 + + + +R ++ G+NEGV P ++ L+ + L Sbjct: 601 SIQMGLVPPSLDQVLVGSMDRTRSTRIKYAVVLGVNEGVIPAAVPEDGVLTEPERELLLD 660 Query: 673 -NLKTAE---KYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT-IASRWLQRLLVL--- 722 + A+ + + A + LI + +L + + + S +++L L Sbjct: 661 SGVPMADGGRRKLLDEQFIIYSALSVPSEKLILSYALADEEGKSLLPSELVKQLRNLFPD 720 Query: 723 ----------------GGTDFFDNLKKRGQCYLD---------------WTRKLDYTTKQ 751 F +R YL W ++ +Q Sbjct: 721 VKEELVLTEPGVLMDSAEHLPFLAHPERVLSYLAVQLKQWMRGTAIASIWWEVYNWFARQ 780 Query: 752 PHYKRP-------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 P ++R L Q S S +++ P++ +A L+ Sbjct: 781 PEWRRRLSVMDDSLLFTNKEQKLPESTSRLLYGQKLRASVSRMERYAACPFSHFASYGLR 840 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----------NHLMKQIIDSH 842 L + D G LFH +++ + + + L+ + Sbjct: 841 LQERK--IYRLEAPDIGQLFHAALSQFANQLRTEQVEWAGLTPEECGRRSSLVMDQLAPR 898 Query: 843 FEKENLPPHID-IIWRHLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAK---------MA 890 + E L ++ + + E + + + + I Sbjct: 899 LQGEILLSSKRYHYIASKLKQVVTKAAVVLGEHAKRGEFKPLGMEIDFGPGKDLPPLVFQ 958 Query: 891 IE-SIGIHLTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AA 943 ++ + + G DR+D G + + DYK+ + Q+ Sbjct: 959 LDNGCTMEIIGRIDRVDQ-AEGSEGLLLRVIDYKSSAASLNLAEVYYGLSLQMLTYLDVI 1017 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + A + Y + + I K + ++ + ++ +K L+ + Sbjct: 1018 ITHAKTWLGIPATPAGVLYFHV-----HNPILQQKNRITSQDAQKELMKRFKMRGLLMAD 1072 Query: 1004 GEQ 1006 + Sbjct: 1073 PQI 1075 >gi|303231697|ref|ZP_07318420.1| putative ATP-dependent nuclease subunit B [Veillonella atypica ACS-049-V-Sch6] gi|302513646|gb|EFL55665.1| putative ATP-dependent nuclease subunit B [Veillonella atypica ACS-049-V-Sch6] Length = 1176 Score = 197 bits (500), Expect = 8e-48, Method: Composition-based stats. Identities = 112/978 (11%), Positives = 262/978 (26%), Gaps = 161/978 (16%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 + I + + + L L A + L + + ++L + Sbjct: 86 QSISQLGRTMLLSLVMKRKGNELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGA 145 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 + L + + E L L+ A + + + + Sbjct: 146 DRVSNGVLQKKLRELALCMSAYEEELQLHGQIDGDPIMD-LVHALPQSPLME-NCHVFVD 203 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P L+ + + +++ +P + Sbjct: 204 GFHWFTPVHFELLYMLFDLAVESVIT----VDLPADPKRILANTGHYGI----------- 248 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + ++ L+ ++ + + F + + + Sbjct: 249 --FNRSVEILENLYKEYG------------KKLSFQHFTGHKGTPVLQSLEENFFHGKRN 294 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-ELTR 408 + L+ A N EA +A + ++ N + ++ + TR Sbjct: 295 TTDEHIPLVSAYNREREADWVARDILSYIESNPNARYRDICIMLRESETYGDTLEKVFTR 354 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 +GI P++ ++T LL + + L+K L A Sbjct: 355 YGIPHFGDRQRPMNNHPLGELMTDLLGIVKHSYSRDIMFRLLKTDLTPLS------REAV 408 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + LE L + + R+ + + E I+ Sbjct: 409 DELENYVLEFGIDHLQWERDNWSYMRRVTGLSDEEQPDAPRH-------ERVNASRQAIM 461 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------ 582 + P + + ++ G ++W K T L+ + + + +L E +G Sbjct: 462 DILIPWFDFAASSDAHTG----AEWCKHIYTVLEALQVPQRLYEWSLEAERDGDLESKAS 517 Query: 583 ------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + +++ E I ++ +D + I + Sbjct: 518 HEQMYNAVIGFLDEMMVLTDTETLTLDEMIALLEEALDNVHYSMIPPSLDHVVITTIERA 577 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAE----KYIGQAAHDFE 689 ++ + + GLN+GV+P+N + + L + AE K + + Sbjct: 578 YSQSWPRVYVMGLNQGVFPQNMGDEGLIKDREREALAEAGIVLAEGALPKAFNENFLLYL 637 Query: 690 MANGTRH-LIYTRSLRENNIPTIASRW-LQRLLVLG----------------GTDFFDNL 731 L + + + + S ++RL LG ++ Sbjct: 638 AMTRAEEYLTISYAGSNDEGEGLESSLVIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRP 697 Query: 732 KKRGQCYLDWTRKLDYTTKQPHY-----------KRPKPFPPLEAQ-------------- 766 + + L +P ++ Sbjct: 698 YQSLSLLSERWGALFSGVPVSPLWWGLYNWARYDAAYRPRLEDVSRGIRDNNDVPVIAPE 757 Query: 767 ----------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + S + +++ P+ YA+ LKL+ + + GT H + Sbjct: 758 LVNGLFLKRGYMSGSVTRLEKYRQCPFKFYAQYGLKLEPRK--VRSFGAPEIGTFLHANL 815 Query: 817 TEL-------IKKRINKNTPEINHLMKQIIDSHFEK--------ENLPPHIDIIWRHLFH 861 L K+ + + L ++ E+ I+ Sbjct: 816 ERLGTQLLSEHKQWRDLDETAQQELCARVAADILEENRYDEDEKTAYDKAIEERVVRTLQ 875 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDLL-KS 910 K ++ +SS + +++ K+++ + L G DRID + Sbjct: 876 KTVSRLVDW--SSRSSFDTMYLEQDFGRPNGWDSIKVSLGDDRYLRLVGQIDRIDEYNRD 933 Query: 911 GFVD--ITDYKTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQI--DCRKVANLFYIRL 965 G + DYK+G + QL AL+ ++ + A + Y + Sbjct: 934 GHTYGMVIDYKSGSTSVNAQEIYYGLKLQLMTYLLALE-SAYKKHHDQPMTPAAVVYTYV 992 Query: 966 KQKFKIDCITNDKKKYSA 983 K ++ A Sbjct: 993 KNPRTPAGEPVSYEEAKA 1010 >gi|225010265|ref|ZP_03700737.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] gi|225005744|gb|EEG43694.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C] Length = 910 Score = 197 bits (500), Expect = 8e-48, Method: Composition-based stats. Identities = 135/1042 (12%), Positives = 288/1042 (27%), Gaps = 186/1042 (17%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 +PF E+ ++ NP ++ P+KRA + + K+ Sbjct: 2 TPFLAEITDKIIKE-----------NP-DFSNTIWVFPSKRAGVFAANYL-KKNNSKTIF 48 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P S+ + + L L + + Sbjct: 49 APEFLSIEAFITRL------------AVIEPASTETSLCLLYESYLE------------T 84 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWWL----------L 183 + S ++ I + + I+ + L ++N + W Sbjct: 85 GIKDKESFSSFIGWGTTILQDFNEIDRYGVTAKKLYTHIQNLQEVSHWALEEDKTEMVKA 144 Query: 184 AADF---LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 F L + +T++++ A+ L+ G Sbjct: 145 YLKFWEILPELYERFTKKMLAQGIGHQGLLYKKAKENIAQFLIDLPATTFYFIGFNALNT 204 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + ++ QY L+ Sbjct: 205 SESDII----------------------------------------------QYILS--- 215 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-LENKIPNIQKCFSDV 359 ++ + + + E V Sbjct: 216 -----EKRGSIFWDLDQYFLENPLHEAGYFMRKHLKNWPYFQESKPEGVSNRYTSTEKKV 270 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 + +A I L E +A++ D L V + G+ +I+ G Sbjct: 271 NIYGVPKSVSQAQLIGEILNEFSQEQVLNTAIVLGDEELLNPVIHAIP-NGLKANITMG- 328 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 + +ATLV H L Sbjct: 329 -------------------APLSGVPMATLVAH---------------LFDLHTNNYSNG 354 Query: 480 KNSYDIMD-LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + D L + + V + +++ D+I T Sbjct: 355 WHIKQVQDVLTHPYIKLLVEGNQYNAVNTFIYHCQKQNISSLST--DYINVAFNTSHTII 412 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + N+ + + L+ + + E S +F + + Sbjct: 413 SLLFKDKANVP-ATFVSRFQELLRVLNDFSEKNKQPQISSEV-NYFSEIFDGLSAQLTTF 470 Query: 599 KA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 N I + + + + L ++G LESR L+F+T+I+ +NEG+ P Sbjct: 471 PFIDNLSGLKKIYLETLSKKRLSFSGDALEGLQLMGMLESRNLDFETVIISHVNEGILPG 530 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT-IASR 714 + N ++ ++ L + ++ A+ F +++ + + + SR Sbjct: 531 GKSTNSYIPLSLKKIFGLPSFKEKDAVYAYHFYRLLQRAKNVYLLYNTATDVLEGGEPSR 590 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 ++ +L ++ Q + + + + L+ +S S Sbjct: 591 FVHQLKT----QGIAKVQVNDQLAMPILDAVTPPLIEIKKDQSVIDQLLQKAKSGFSPSA 646 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----P 829 + I +P Y R +LKL ++ GT+ H+ + L I + Sbjct: 647 LNTYIRNPIDFYKRYVLKLKDPEILEELIAYNTFGTIVHDSLQALYTPAIGQVLTENHFK 706 Query: 830 EINHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFV 883 E N + I+ FEK + P ++I + + FLE++++ + I + Sbjct: 707 EFNQQLPHILTHFFEKHHSPTKSLKGKNLIAFSVLLQYLKDFLEYDQECAKKEPIYIESL 766 Query: 884 NIPAKMAIESIGIH----LTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------T 928 +M ++ G+ G DR+D +G I D+KTG + + Sbjct: 767 EKEYQMTLQIPGVSESVLFIGSLDRVDKR-NGVTHIIDFKTGAVKPTDLKLKDWDGLNNS 825 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS--ADEL 986 ++ QL A K + + + T + A++ Sbjct: 826 PERAKVLQLLSYALLYSQN--HGNTPVKTGIYSFKNTQDGYMFFEDTLKPSNKNIVAEDT 883 Query: 987 SEKSLKNLIEIVTLLQNGEQPF 1008 + L+ I+ L N E PF Sbjct: 884 CNAFKEVLVGILQELFNIETPF 905 >gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2 155] gi|118172133|gb|ABK73029.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2 155] Length = 1045 Score = 197 bits (500), Expect = 8e-48, Method: Composition-based stats. Identities = 111/1005 (11%), Positives = 261/1005 (25%), Gaps = 130/1005 (12%) Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY- 131 P+++++ + + P RL+ A I R L ++D + Sbjct: 86 VREPLVRTVHSYAFAVLRLAAQRNGDPPP------RLITSAEQDGIIRELLAGDLEDGHR 139 Query: 132 -PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P A L D++ L L WL A F + Sbjct: 140 SPVGWPEQLWPALTTAGFATELRDLMARCTERGVDPIALQRLGRTAKRPEWLAAGRFAQA 199 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + + + A G + G+ + Sbjct: 200 YEQ--------------IMLLRSAVGMAAPQATVPALGAAELVGAALEALGADDELLDTE 245 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + +++ P A + + + L Sbjct: 246 RNRIKLLLVDDAQHLDPQAARLVRALAAGTGLTVIAGDPDQSVFGYRGADPVLLRDDT-- 303 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + V + A + E Sbjct: 304 ---HPAITLTQSYRCAPEIASAITGLGQRLPGVSDTRHWTGNPQREGTVTVRLAASTHAE 360 Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTL 425 IA ALR + + + + ++ + + + LT G+ + + +P+ Sbjct: 361 GTMIADALRRAHLVDGIPWSQMAVIVRSVPRVGTALARALTAAGVPVQDNGTDVPVGRQP 420 Query: 426 HSSILTSLLNA-IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 ++ L ++L+ D + L+ P+ + R G++ D Sbjct: 421 AAAALLTVLDVTATGHLDADSAVALLTGPIGRVDPVTLRQLRRALR----RADGSQPPRD 476 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 DL ++R + H L + + + + Sbjct: 477 FGDLLVDAIEREPKGLSAEH------------ARTLRRLRAVLTAARRSDASGADPRYTL 524 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S + + + + +L ++ + + Sbjct: 525 WQAWHASGLQRRWLAASERGGSVGAQADRDLDAVTTLFDVADQYVNRTAGA-----SLRG 579 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +D +TRL + + +L + +D +++ G+ EG+WP + L Sbjct: 580 LVDHVTRLGAAVARTEPETAAEAVAVLSVHGALAGEWDFVVIAGVQEGLWPNMIPRGGVL 639 Query: 665 ------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI- 711 + + ++ + + M ++ T + ++ Sbjct: 640 GTQHLVDVLDGVADMTDRTVSTRAPLVAEERRLLMAAMGRARTRVMITAVDSDTGDESLL 699 Query: 712 ASRWLQRLLVLGGTDFFDNLK--KRGQCYLDWTRKLDYTTKQPH---------------- 753 S + + + R +L P Sbjct: 700 PSPFCAEISAWATEPVAEPPLVAPRVLAPSALVGRLRAVVCAPDGAVDDDARACAAAQLA 759 Query: 754 --------------------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 +P T S S ++ L + P R Sbjct: 760 RLAAAGVPGADPSQWHAMTSLTTEEPLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGD 819 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 D + G+L H +++E K ++ + ++++ D Sbjct: 820 DGRDVR------STVGSLVHALVSE-----PGKTESQLVNELEKVWDDLPYDAKWYSD-- 866 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLL 908 + +F E + + ++ IP + + + G+ + G DR++ Sbjct: 867 -NELARHRAMLETFTRWREDTRRQLTEVATEIPVEGIVVEPGENTPGVRVRGRLDRLERD 925 Query: 909 KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 ++G + + D KTG +P + + QL++ A+ AG D L Y+ K Sbjct: 926 EAGRLVVVDLKTGKSPVTKDDAQNHA-QLAMYQLAVAAGLLDDGDEPGGGKLVYL---GK 981 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 T ++ + + L+ + E F++ + Sbjct: 982 AGAAGATEREQDPLTPDKRAEWLETVGEAAAATAGPR--FVARVN 1024 >gi|318060453|ref|ZP_07979176.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG] Length = 1839 Score = 197 bits (500), Expect = 9e-48, Method: Composition-based stats. Identities = 124/1057 (11%), Positives = 251/1057 (23%), Gaps = 134/1057 (12%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLVE+ + + +++A LR G P + Sbjct: 21 ETLVESVAARVEAGADPERLLVLTFSRKAAVSLRDRMALRIG--PASAPRATTFHSYGYA 78 Query: 88 KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 A + P +S ++ L + L+ + + + Sbjct: 79 LVRAHQEAGPDGTPVRLLSGPEQDLAVRELLEG---ETALAAQGRGRVRWPGQLRACLTT 135 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 A + ++ LH + W AA FL + V A Sbjct: 136 RGFADEVRAVLARSRELGLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 195 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + R + + + + + PA RL+ +A G +L D Sbjct: 196 LVHRADLLARRPDVAKDLAQAYDAVYVDEYQDTDPAQVRLLEALAG--QGRTLLAFGDPD 253 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + V L G Sbjct: 254 QSIYAFRGADVNGILDFPDTF--------------RTTGGAPAPVAVLPTARRAARGVLD 299 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 L + + + ++ + + + E +A LR + E+ Sbjct: 300 ATRALTLRIPLTRLPAAAVRAHRDQLSTREGGSAEVYTCPSPGAETDHVADLLRRAHLED 359 Query: 386 KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 A++ + ++ LT G+ +D + PL L + L + Sbjct: 360 DVPWGDMAVLLRAGSRLPALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAE 419 Query: 442 DFMAIATLVKHPLAKF-----------------------------------GFPEKYLSR 466 + P P S Sbjct: 420 ARGETPQAGETPPVGETPAGEGESGPAPEGDSVPEAEGEPVPEGEIQPVPLPQPSPEPSW 479 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQK---------------NNTHVPHWQSR 511 + L D DL+ L A ++ P Sbjct: 480 IATETAVDLLASPLCGMDAADLRRLGRALRAEERAGGNPVPPPSDVLLARALAEPERLIA 539 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + A L + + + L T + + + + W + Sbjct: 540 HDAAYAKAARELGLLLARTRSLLAKGGTAEEALWELWNGTRWPTRLERASRRGGAAGRNA 599 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 +L ++ E + + + + I +T+ + + + ++ Sbjct: 600 DRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTLSGRTVRPDAVRLM 655 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-----H 686 ++ L + +++ G+ EGVWP + L L A Sbjct: 656 TAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGALLAEERRLF 715 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 L+ T SR+L L V +R +L Sbjct: 716 YVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAVPALVAELR 773 Query: 747 YTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDPY 783 TT PH P + + + DP Sbjct: 774 ATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVNEVPVRDPA 833 Query: 784 AVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 A L + G + H ++ + + + Sbjct: 834 QPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVATGRSPADL 892 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 ++ + + FL ++ + P + Sbjct: 893 DVLMERLDTVWDGLAFDAPWKSAQEKENAR--AALERFLRWHVLDRTGRTPVASEHPFDV 950 Query: 890 AIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKA 946 + + I + G DR+D +G + D+KTG P + PQL++ A+ Sbjct: 951 TLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLAVYQRAVAE 1008 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 G+ + A L ++RL+ K + Sbjct: 1009 GAVGPLTPGG-AELVHLRLEASKKDPLSPKVQPPGPP 1044 >gi|218134062|ref|ZP_03462866.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC 43243] gi|217991437|gb|EEC57443.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC 43243] Length = 1091 Score = 197 bits (500), Expect = 9e-48, Method: Composition-based stats. Identities = 122/998 (12%), Positives = 280/998 (28%), Gaps = 119/998 (11%) Query: 48 TIYVPTKR-AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106 + VP + + + +++ S I I S + F L + + + Sbjct: 35 LVIVPEQYTMAT--QKKLVQLHPGHSIIRTDILSFQRLASRVFAELGLEGQTI---LDDT 89 Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166 + L + +++ R +L +L + +I + Sbjct: 90 GKNLIIRKVMENHRKELRAFAGNLDKT-------------GFVSEVKSVISELLQYAIAP 136 Query: 167 EDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 +D+ + +++ + + E +S ++L+ Sbjct: 137 DDMPQIITAVAGNGALADKLTDIEVVYRAFMEYTERDYITSES--LLSLLAQHVHESELI 194 Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 I I G TG P L++ + V +D ++ + Sbjct: 195 KGSVIAIDGFTGFTPVQYGLLARLLETAAEVYVTVTID------------------SNEH 236 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 P+ A + I + + F ++ Sbjct: 237 INVQDGPESLFA--MSKETISSLLRIADESHVEVAPYTLCEHTYRFDRAPELAFLEQNMF 294 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRV 402 + ++ + +EE IA + E + A+++AD + Sbjct: 295 RYNGRVYRDEPENIEIYCGITPKEELQFIAAEILRLTREQGIRYRDIAVVSADIETYGML 354 Query: 403 KL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + I + + + S + I + ++ ++ + E Sbjct: 355 AANIFEQNDIPAFVDYKRNIMNNPMIEFMRSGIAVIESGYSYESMFRFLRSGITAITPNE 414 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 L + RG K Y D + +R + +++ E + A Sbjct: 415 TDLLENYCLALGI--RGRKRWYSQWDRNYIKKNREKADLTQLNELRYRTVKILEPLDRAY 472 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + L + ++ SD + L+E L + + + Sbjct: 473 TAASGTTVSVGEL------LEALYEFVAASDIEHKMNELADRLELNEENALASQY-RQIY 525 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + SLF +I K E+ ++ ++ V + + I +RL N Sbjct: 526 PKVMSLFDEIYSLLGEEKIKRKEFARLLDSGLEEIKVGLIPPTADCVLIGDMQRTRLDNI 585 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR 695 L G+N+G+ PK + LS + + L A K M Sbjct: 586 KVLFFAGVNDGIVPKKSENKGILSELDRYILENASVTLSPDARKKAFIERFYLYMNLTKP 645 Query: 696 --HLIYTRSLRE-NNIPTIASRWLQ-----------RLLVLGGTDFFDNLKKRGQCYLDW 741 L T + R + S +++ R D + + K + + Sbjct: 646 SWKLYLTYAARGIDARERRPSYFVRTMYKLYPKLSMRTCDDMNNDMWLTIPKADKEWNIK 705 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 +++ S + ++Q + +A + R L LD Sbjct: 706 DSQINLVQAAADAL--------YGTDVRESVTRLEQFASCEFAHFLRYGLGLDERD--VY 755 Query: 802 DPDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIIDSHFEKENL----PP 850 +D G++ H + + + + + + ++ +++D+ + Sbjct: 756 TISASDTGSILHKSMECISSEVIRSGMSFADMKDEQRHEIVGRVVDTVAAEYGNAVFKDS 815 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES----IGIHLTGFAD 903 + +++ + Q + + + + L G D Sbjct: 816 SRNEYMIEKVKELTQRTV-WAIGRQLEQEQFVPESFEVRFSLPMNESVSKRKVELVGSID 874 Query: 904 RIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--- 956 RID+ + G + I DYKTG+ + QL ++ K Sbjct: 875 RIDVCEDGDNIYIKIIDYKTGNEKFSLYKTYYGLRIQLMTY-MIAAMEHEKKLHPGKNIV 933 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 A FY + ++ S +++ +K L L Sbjct: 934 PAGAFYY-------VVDDPIVDRQDSREKVEKKILAQL 964 >gi|225570786|ref|ZP_03779809.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM 15053] gi|225160248|gb|EEG72867.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM 15053] Length = 1116 Score = 197 bits (500), Expect = 1e-47, Method: Composition-based stats. Identities = 115/1004 (11%), Positives = 265/1004 (26%), Gaps = 148/1004 (14%) Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + S G + F + P + + + L L R+ + +KL + ++ +S Sbjct: 64 VLSFGRLAYRVFEETGGGAL---PVLDDEGKNLILRRIAGSYEDKLKVLKGNMKKLGYIS 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWT 196 + +I + E+L + + + K ++ Sbjct: 121 -------------EVKSVISEFTQYDIGEEELERVMETAGPDSRLYYKLKDILLLYKGFS 167 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E L E + + ++ A +++ G TG P RL+ + Sbjct: 168 EYLEEKYIT--KEELLDVLSRMAGQSELLKDSTVVLDGFTGFTPVQNRLLLELMRCCRDV 225 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 IV +D ++ THP A + + Sbjct: 226 IVTVTMDDREDPYVY------------------THPYQLFAISRQMVTSLIRIARESSIE 267 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 E F D + V++ A N EEA+++A Sbjct: 268 VKEPVCLYSRPLPRFRGNDALAFLERSLFRYGQSVYGGEQEAVSVHAARNPEEEALAVAG 327 Query: 377 ALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTS 432 +R + ++ +I +D N +GI + + + + S Sbjct: 328 RVRNLVRTKGYRYREIGVIASDMNTYGDYLEQAFDMYGIPVFMDHKRSILLNSFVEYIRS 387 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL+ + + + ++ ++ LA F E I + Sbjct: 388 LLHMVQQRFSYESVFRFLRTDLAGFTGEEVDELENYVL-----------GLGIKGYRKWQ 436 Query: 493 LDRIATQ-KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + E + Q + + Sbjct: 437 EKWVRRLKGMKEEDLGRLNHYRTVFVEKVDGFNYVLRQRKKTVRDITMAVYDFMVQEELQ 496 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 K Q + + + + LF K + + E+I ++ Sbjct: 497 VKLKRQEEAFQRSGELA----LAREYAQVYRIVLELFDKFVALLGDEPVSLDEYIKLLDA 552 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 ++ V + +RL + L G N+ P + LS + Sbjct: 553 GLEEARVGVIPPSPDQVVAGDVERTRLKDIKALFFVGANDSFLPGALGQGGLLSEHDRQQ 612 Query: 672 LN------LKTAEKYIGQAAHDFEMANGTR----HLIYTRSLRENNIPTIASRWLQRLLV 721 + +++ M + Y+ + + + S +Q L Sbjct: 613 FSKEKLALSPGSKEKAYIQKFYLYMNLTKPSDLLEVYYS-KVSSDGRSSRPSYLIQELRR 671 Query: 722 LGGTDFFDNLKKRGQCY---------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 L ++ +++ L + + + P + + Sbjct: 672 LFPHLSVEDEEEKELHLQEMTKETAVSRLIDGLGSADIQADAGWKELFSWYRRSPEFKDR 731 Query: 767 PRTY----------------------------SFSEIKQLINDPYAVYARRILKLDFIPH 798 S + +++ +A + L L Sbjct: 732 LERLIEAGYYTYTMDGLTRSAAKRLYGDTFEDSITRMERYSTCAFAHFLTYGLGLTERQ- 790 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKEN-------- 847 + + D G + H+ + + K+ T + ++ ++ E+ Sbjct: 791 -EYEFQAVDLGNVCHSALEKYSKRVEEAGRDWTDISDGQQREWVEQSVEEAVTDYGNSVL 849 Query: 848 LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + ++ + E+ + + G DR+ Sbjct: 850 YSSARNEYMIGRMKRMLSRTIWALTEQLSAGDFKPAGYELRFA----------NGKIDRV 899 Query: 906 DLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--AN 959 D + G V + DYKTG + + + QL + A + ++V A Sbjct: 900 DTCEDGGKIYVKVLDYKTGMKAFDIVSLYEGLQLQLMVYMDAAVKLEQRRNPGKEVVPAG 959 Query: 960 LFYIRL------KQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 +FY R+ K + + + K+ D + + + L + Sbjct: 960 VFYYRIQDPLVEKSEGEEERREAVLKELKPDGIMSQEEEVLSHL 1003 >gi|295401124|ref|ZP_06811098.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius C56-YS93] gi|294976917|gb|EFG52521.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius C56-YS93] Length = 1172 Score = 197 bits (500), Expect = 1e-47, Method: Composition-based stats. Identities = 122/966 (12%), Positives = 243/966 (25%), Gaps = 142/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----L 188 L L + + L D+I + + L E+ + Sbjct: 110 LKLFGRAVDKAGFIQQLHDMITECKRYCVAPQHLREHVKFLEEQGKRPAEKVLADKLNDI 169 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 I + L+ + L+ + H I I G P ++ Sbjct: 170 SIVYEELERSLLNHYIH--SEDYLRLLAEKIPHSRYLRNAEIYIDGFHQFTPQEYMVLEQ 227 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H V +D H Y AK + Sbjct: 228 LLIHCKRVTVSLTVDAPYDD----------------WLPNELHLFYLTAKTYHDIRQMAL 271 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + + + + EA N R Sbjct: 272 ANGIALEDAIILEKNMRHQEGALAHLEAH------YHARPAVAFSEKTDSIIVYEAANRR 325 Query: 369 EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424 E +IA + + + + ALI + R VK + F I + + Sbjct: 326 AEVEAIAREIVRLVRDEGYRYRDIALIVRNTEDYRDLVKTIFSDFHIPYFMDEKESMHHH 385 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSY 483 +L + + I + ++ +K L G L A + LE L Sbjct: 386 PLIELLRASMEIITSRWRYESVFRAIKTDLLFPVGEDTATLREAMDRLENYVLAYGIKGE 445 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + T + + ++E+K+ L PL + Sbjct: 446 KWTNGERW------TYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIAAPLSKLERRMRR 499 Query: 544 TCGNLSISDWTKLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 S+ + L + LQ ++ R + E+ + LF++ ++ Sbjct: 500 AKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLFNQYVDM 559 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 E+ II +D + I SRL++ + G+NEGV Sbjct: 560 LGSEPVPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVKCAFIVGVNEGVI 619 Query: 655 PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRE 705 P ++ L+ + L + + +A + L T E Sbjct: 620 PAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFIYLALTCPSERLYVTYPLANE 679 Query: 706 NNIPTIAS------------------------------------------RWLQRLLVLG 723 S + +L Sbjct: 680 EGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEHAEQQAFITVPRATLTYLVAQLQAWK 739 Query: 724 GTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFS 773 L + RK + P + L + S S Sbjct: 740 RHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFYTNAATPLKKEISKRLYGKKIQASVS 799 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831 ++Q P++ + L+L F+ D D G LFH + + + Sbjct: 800 RMEQFQKCPFSHFVSHGLRLKERDVFR--LDAPDIGQLFHYALKIISDRLREAKIDWRYL 857 Query: 832 ---------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEK 880 ++QI ++ L + + + + E S Sbjct: 858 SKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMKRKLQNVVARTTNVLSEHAKASGFVP 917 Query: 881 IFVNIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926 I + + + + L G DR+D +S + + DYK+ Sbjct: 918 IGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNL 977 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADE 985 + Q+ + + + A + Y + +K + + Sbjct: 978 AEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLHDEKEAERK 1037 Query: 986 LSEKSL 991 L E+ Sbjct: 1038 LLEQFK 1043 >gi|312112100|ref|YP_003990416.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1] gi|311217201|gb|ADP75805.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1] Length = 1172 Score = 197 bits (499), Expect = 1e-47, Method: Composition-based stats. Identities = 121/966 (12%), Positives = 243/966 (25%), Gaps = 142/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA---LKNEKYGMWWLLAADF----L 188 L L + + L D+I + + L E+ + Sbjct: 110 LKLFGRAVDKAGFIQQLHDMITECKRYCVAPQHLREHVKFLEEQGKRPAEKVLADKLNDI 169 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 I + L+ + L+ + H I I G P ++ Sbjct: 170 SIVYEELERSLLNHYIH--SEDYLRLLAEKIPHSRYLRNAEIYIDGFHQFTPQEYMVLEQ 227 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H V +D H Y AK + Sbjct: 228 LLIHCKRVTVSLTVDAPYDD----------------WLPNELHLFYLTAKTYHDIRQMAL 271 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + + + + EA N R Sbjct: 272 ANGIALEDAIILEKNMRHQEGALAHLEAH------YHARPAVAFPEKTDSIIVYEAANRR 325 Query: 369 EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424 E +IA + + + + ALI + R VK + F I + + Sbjct: 326 AEVEAIAREIVRLVRDEGYRYRDIALIVRNTEDYRDLVKTIFSDFHIPYFMDEKESMHHH 385 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSY 483 +L + + I + ++ +K L + R A + LE L Sbjct: 386 PLIELLRASMEIITSRWRYESVFRAIKTDLLFPVEEDTAALREAMDRLENYVLAYGIKGE 445 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + T + + ++E+K+ L PL + Sbjct: 446 KWTNGERW------TYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIAAPLSKLERRMRR 499 Query: 544 TCGNLSISDWTKLTVTCLQ---------NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 S+ + L + LQ ++ R + E+ + LF++ ++ Sbjct: 500 AKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWNAVIDLFNQYVDM 559 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 E+ II +D + I SRL++ + G+NEGV Sbjct: 560 LGSEPIPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVKCAFIVGVNEGVI 619 Query: 655 PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRS-LRE 705 P ++ L+ + L + + +A + L T E Sbjct: 620 PAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFIYLALTCPSERLYVTYPLANE 679 Query: 706 NNIPTIAS------------------------------------------RWLQRLLVLG 723 S + +L Sbjct: 680 EGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEHAEQQAFITVPRATLTYLVAQLQAWK 739 Query: 724 GTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFS 773 L + RK + P + L + S S Sbjct: 740 RHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFYTNAATPLKKEISKRLYGKKIQASVS 799 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-- 831 ++Q P++ + L+L F+ D D G LFH + + + Sbjct: 800 RMEQFQKCPFSHFVSHGLRLKERDVFR--LDAPDIGQLFHYALKIISDRLREAKIDWRYL 857 Query: 832 ---------NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF--LEHEEKIQSSIEK 880 ++QI ++ L + + + + E S Sbjct: 858 SKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMKRKLQNVVARTTNVLSEHAKASGFVP 917 Query: 881 IFVNIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926 I + + + + L G DR+D +S + + DYK+ Sbjct: 918 IGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRVDKAESSRGVLLRVIDYKSSAKTLNL 977 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADE 985 + Q+ + + + A + Y + +K + + Sbjct: 978 AEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAGILYFHVHNPIIKSDQLLHDEKEAERK 1037 Query: 986 LSEKSL 991 L E+ Sbjct: 1038 LLEQFK 1043 >gi|73541803|ref|YP_296323.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha JMP134] gi|72119216|gb|AAZ61479.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha JMP134] Length = 957 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 166/1046 (15%), Positives = 319/1046 (30%), Gaps = 123/1046 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKR--AIQELRSEFIEITGK 70 P F + A F D A + VPT + + Sbjct: 8 PGPDFLDQAAAA-------AWFFLDRCGVSE-AGAHVIVPTAAQIPGVRMALDAAARAAG 59 Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + +LP + +LG + + L P S+ RLL + + + Sbjct: 60 QPRLLPRVLTLGHWLLD-------LPPEGAPVRSHAARLLAVQQAVRA-----------Q 101 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + A LA+ L I D + T + + + L L+ Sbjct: 102 DWLRRSFGAQTESAAWGLAQTLLSICDELNTRWLEDVAVSDGEAMDGTDRAALLQGALER 161 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + +ER++ + R + G +P+ R + +A Sbjct: 162 TYAHLSERMLGEES-----------RIVLAFWQALS-------GPDDPLPSRRRALRRLA 203 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +G +V P + + L D+ Sbjct: 204 QQLSGPVVWIAPTPPTPIEG-------------AFLRDADELVPVLEIGYDWSGAAEAQE 250 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + ++ + + + P T +P + + + +I +E Sbjct: 251 PGWYDTLISLWPEARISDAADAPAFT----------PALPTLPEGRPAIRVIGTARFEDE 300 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A + A L L+ ++ AL+ DR +ARRV+ L R G + G LSTT ++ L Sbjct: 301 AAAAADQLVQWLNAGRRNIALVAHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAAL 360 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + + + D A+ L+K P FP+ A AL +R + S L+ Sbjct: 361 MRWFDLLVRDGDTAALLDLLKSPFCLPDFPD---RGAAIALIERQVRRDNVSGGWDRLRH 417 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L + + + + A + + +T L + Sbjct: 418 L--------PRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPL 469 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 S W L + + + ET S + E+ +++ Sbjct: 470 SMWLGCLDGTLDALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLS 529 Query: 611 RLIDGETV-KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L++ +P ++ + IL +R+ FD +++ G ++ P + A+ F S M+ Sbjct: 530 ALLESVAYKEPSAASAARITILPLNGARMRRFDGVVVVGCDDAQLPSSAAELMFFSNQMR 589 Query: 670 SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727 +L L+ E Q A D + ++ T P S W++RL Sbjct: 590 RELQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERLS------- 642 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + G L + T P P P +S L PY +A Sbjct: 643 -ACCARAGVAIEASMAPLVHQTFAETQGMPAPAAPQLVPA-RWSAQAYNMLRRCPYQFFA 700 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIID 840 R+L L + D ++ D G L H ++ ++ + + E +++I D Sbjct: 701 GRMLGLAGLDAVSDDLEKRDIGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISD 760 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIE---SIGI 896 F I + + ++ S++ + + ++ I A + + I Sbjct: 761 DVFGALMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWFWRGGEIDAGVDLPMPDGKPI 820 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDC 954 L G DR+D G + DYKT + + + D QL Sbjct: 821 RLNGRIDRLDQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLL----------R 870 Query: 955 RKVANLFYIRLKQ-KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 ++ L+ + + + D + L + V L+ G + L Sbjct: 871 ADAVGGSWVALEGVRDGAASLQREVDLPDFDAAVAWLERQLRDDVMRLREG-----ARLP 925 Query: 1014 LSEK--SNIQSEYDHLARVAEWREEY 1037 + + L R W Sbjct: 926 AFGDASACMYCSARGLCRKGFWESTA 951 >gi|207723137|ref|YP_002253536.1| homologous recombinational repair protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206588330|emb|CAQ35293.1| probable homologous recombinational repair protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 755 Score = 196 bits (498), Expect = 2e-47, Method: Composition-based stats. Identities = 111/697 (15%), Positives = 213/697 (30%), Gaps = 53/697 (7%) Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 + + + A +EA A L L+ ++ AL+ DR +ARRV+ L R + Sbjct: 88 DRPPPGLRIAGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVP 147 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + G LSTT ++ L L+ + D A+ L+K P E Sbjct: 148 VRDETGWKLSTTRAAAALMRWLDVVQGDGDTAALLDLLKSPFCLREADAPSSVAPAWVAE 207 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 L +N + + T + V A L + + Sbjct: 208 LERRVRRRNVSGGWGRLRRLAAQRGTDTDAADVTD------------AGPLAERL----- 250 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L+ + G+ ++ W L L + + + + + S Sbjct: 251 GLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVSVHG 310 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNE 651 + + + EW +++ L++ + + IL +R+ FD +++ G ++ Sbjct: 311 SADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDD 370 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLREN-NIP 709 P + F S ++ +L L + Q A D + ++ T P Sbjct: 371 AQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEP 430 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S WL+RL ++ L + T P P T Sbjct: 431 NRLSGWLERLQRRL---AVAGMRIDAPVVLPALQTASRPTDMPAPA------APALVPAT 481 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---K 826 S + L PY + R+L+L + + ++ D G L H I+ ++ ++ Sbjct: 482 LSAAAYNSLRRCPYQFFVGRMLRLGELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMA 541 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNI 885 + + L++ + D F + + + + S+L+ + ++ + Sbjct: 542 DPADRLALLQSLTDERFGSLLAEDGHALRFYRRWQDVMPSYLDWQAAREAEGWRFEAGEV 601 Query: 886 PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK--LIDPQLSLE 940 +I + L G DRID V + DYKT K D QL Sbjct: 602 DVDTSIALPGGQALRLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKAKTPFEDCQLPFY 661 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + + D L+E+ K++ + Sbjct: 662 GLLDARAAVGGWVSLDG--------DARGDKRETGLPDFTEVVDWLTEQMGKDMTALAAG 713 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 E + L R W Sbjct: 714 APLPAFG-------DESACRYCAARGLCRKGYWSAGA 743 >gi|153813841|ref|ZP_01966509.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756] gi|317501977|ref|ZP_07960161.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium 8_1_57FAA] gi|145848237|gb|EDK25155.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756] gi|316896657|gb|EFV18744.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium 8_1_57FAA] Length = 1131 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 118/916 (12%), Positives = 254/916 (27%), Gaps = 138/916 (15%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209 + ++ +E L E + D ++ + + E L E + Sbjct: 121 EVKSVLSEFAQYGVDFERLDDFMKEVPPESYLHYKLDDIRTIYEKFEEYLSEKYIT--KE 178 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + ++ + + + G TG P RL+ + + ++ +D Sbjct: 179 EMLDVLSDAVPYSDILKGSVVAMDGFTGFTPVQNRLIGELFSVCEKVMITVTMD------ 232 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 ++ + + + L+ K+ +++ + R S+ Sbjct: 233 -----GRENPYVYEHPYQIFALGKQMVTSLMKIAGEKKTEIEEPICLFERPVYRFRDCSE 287 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 T++ V+L E + +EA +A ++R + Sbjct: 288 M-------AFLETELFRYSGAKYNGSCESVSLHEVRSPGKEAKYVAESIRRLVRTKGYRY 340 Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + A+I +D N+ V F I + + + + SLL I + + + Sbjct: 341 RDIAVIASDMNVYADVLEKACASFDIPVFMDHKKSILLNSFVEYVRSLLGMIQENFTYES 400 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + ++ +F E I K K Sbjct: 401 VFRYLRSGYCEFTEDEIDRLENYCLAL-----------GIKGYKKWQQAWARKTKEA--- 446 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558 EE+ E L ++ I PL+ K T +++++ + + + Sbjct: 447 -------DEEEVEKLNHLRVKFVEKIDPLMFVSRQKKKTVLDITLAVYEFIAGEHLQEKL 499 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 Q ++ +E+ + + LF K E E+ +++ + V Sbjct: 500 EQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCELLDAGFEEAKV 559 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----- 673 + I +R+ + L G N+ + P N LS + Sbjct: 560 GVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSERDREKFKEKDIS 619 Query: 674 -LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD 729 ++ I A L + S + +Q L L Sbjct: 620 LSPGPKEKIYIQKFYLYTALTKPTELLSLSWSKVSGEGKSLRPAYLIQELRRLFPNLSVV 679 Query: 730 NLKKRGQCYLDWTRK--LDYTTKQPHYKR------------------------------- 756 + + R + TR+ ++ K +R Sbjct: 680 DEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEWKELYTWFQKDGRNKKEIESILNAG 739 Query: 757 ----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 P+ L + S + +++ + YA + L+L + + Sbjct: 740 FLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCAYAHFLSYGLRLSDRE--EYGFEAL 797 Query: 807 DRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDSHFEKEN--------LPPHIDII 855 D G + H + K + K L ++ID E+ + Sbjct: 798 DLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDESVEESVIDYGNTVLFSSARNEY 857 Query: 856 WRHLFHKISH---SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 ++ L + + + + +G DRID Sbjct: 858 MITRIKRLIRTSVWALTKQIE-KGDFLPSGYEMQFG----------SGKIDRIDTCFDND 906 Query: 913 VD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLK 966 +TDYKTG + + QL + A + + A +FY R++ Sbjct: 907 CVYVKVTDYKTGMKSFDITALYHGLQMQLPVYLNAALDVEQRKHPHKTIVPAGIFYYRIQ 966 Query: 967 QKFKIDCITNDKKKYS 982 + T D + S Sbjct: 967 DPIVSEEKTQDAVERS 982 >gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A] gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A] Length = 977 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 109/1066 (10%), Positives = 261/1066 (24%), Gaps = 187/1066 (17%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 +VE + N + +++A E+ E + + ++ Sbjct: 30 RVIVERVLHMVRNGADPGRILCLTFSEKAAGEMLGRLKESIDTTEM---DVCTFHSFAKQ 86 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + P + ++ L + P Sbjct: 87 ILE-------DNEPESGIVTSRGTISGPAGAAWAAAHIDEFKLGSHRVVIRPHEV----- 134 Query: 148 LAKNLADIIDII---ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + I++ I + E +L + L + + L E+ Sbjct: 135 ----IRKIMEGISGFKRELVTPGELEKYLEGEENGE----LKDLCSVYQRYQGHLREMGI 186 Query: 205 SSPVGYQIALMRAEAEHLMK-----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 +R G I++ + A L+ +A + + Sbjct: 187 IDFDDMVSEAVRLFRARDDVRSEYGGRYSHILVDELQDANYAQLELVRLIAGN-----IT 241 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D + + T + + Sbjct: 242 AVGDENQSIYGFQGAYTSGFENFDDITGGA-------------------------ETISL 276 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + L + + V ++E +E EA IA + Sbjct: 277 NNNYRCTKTIAGLAAQCIANTPSGSQAGAVHPEGSP---VEIVECADEDSEAACIADRIV 333 Query: 380 MSLDENKKKS----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + A++T ++ EL G+ S G + + + L + L Sbjct: 334 QIRSPGGESAGYSIAVLTRKIADGKKFSDELELRGVPARYSGGDGIFSAGPARELLTYLE 393 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 L+ + DI + + Sbjct: 394 IARAPASAGGEINLL------------------------MKKHGIPEGDIAVINTEAKKA 429 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + R + +++ + ++T + + I+ Sbjct: 430 AYNDIHGNDHVLEVIRRGGNSGVRKKAELAGLVRRLDKVITLAGSYSPGTLAYHIAVPLA 489 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 L++ EH + L ++ + + + Sbjct: 490 GLFRNLEDGAGAEH-----------LREACRLATEYDLLDPRGGLDG--LVGYLWAANSD 536 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSD 671 + ++ + + + +S+ FD + + E P + + Sbjct: 537 KNLRSDADAGGAVEVTTIHKSKGREFDAVFIADAVEDRLPLKYKGRKYQVPTTLLHGRRP 596 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFF 728 + + + + L T S + T SR+L+ + Sbjct: 597 QGKEKDRHMQEERRLLYVAMTRAKKNLCITYSKEYASKKTESKPSRFLEEMQFRSNPLVR 656 Query: 729 DNLKKRGQCYLD--------WTRKLDYTTK------------------------------ 750 + G + Sbjct: 657 TFVFAGGPAQGAGTASTVSGLQEEAMRAVSVGDHGTAVQKVTDLAALEYMKEHGGLDGFV 716 Query: 751 QPHYKRPKP-----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P + P P P + P S ++I P + ++ + P Sbjct: 717 PPAARSPSPGLGAGAGPAKPAPLRLSSTKIGTYKKCPLMYWFAHVMTIPSPPGI-----P 771 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR--HLFHKI 863 G + H ++ ++ ++N TP+ + +++ K + + + Sbjct: 772 MVMGGVIHKVLEKITDAQMNGQTPDEAGAL-AMLEGQL-KYAVYDSRTSFEQSKEEAESM 829 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 F++ S + I V ++ I G DR++ G + + DYKTG Sbjct: 830 ISWFVKW--SAGSPNKPIAVEKKFELEIAGAEF--RGSIDRVERTPDGGLVLIDYKTGRT 885 Query: 924 P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + D QL+L A A K + ++ + V L Y L+ ++ ++ S Sbjct: 886 KVSPGKIAE--DVQLNLYAEAAKK-LYKELPEKAV--LLY--LESGETVEYRLDEASVKS 938 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 A I + +G + + + + +Y + Sbjct: 939 A-----------IGRIEEYVDGIREGRFDPTPAVSTCMFCDYSGMC 973 >gi|51473593|ref|YP_067350.1| hypothetical protein RT0391 [Rickettsia typhi str. Wilmington] gi|81390120|sp|Q68WX4|Y391_RICTY RecName: Full=Uncharacterized protein RT0391 gi|51459905|gb|AAU03868.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] Length = 864 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 137/717 (19%), Positives = 242/717 (33%), Gaps = 115/717 (16%) Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +++ E +N EEA IA K A++T D L + L + ++ Sbjct: 212 NISYSEPNNIYEEAKQIAYI---CELNKDKHIAIVTNDNKLKKVYCNFLDQKYSDLL--- 265 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L T +LT+++ I D + L+K+PL LEL+ Sbjct: 266 GNDLRRTNIGELLTAIIKIICNNFDLKLLFLLLKNPLINCHS--------VQKLELMLSN 317 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 N+ L L +EE KE L+D + Sbjct: 318 QNRFISSPKYLLQL------------------QFENEELKEYCANLIDILF--------- 350 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG-S 596 T +I+ LT + + P +W +EEG+ L + +I Sbjct: 351 ------TNNPHNITGILTLTQEIAEKLL-------PTIWEKEEGEVLIEFLTNLISYSKH 397 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 N ++ I + L+ K SS++ I + L FD +IL N W Sbjct: 398 INLMNKKDFPKIFSFLLSNIK-HYKNTDSSSIIIGQPEDLVLCRFDLIILPHFNNEHWSP 456 Query: 657 NTAKNPFLSRVMQSDLNLKTAEK-YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 N +P LS+ LN+ + F + + ++ + + N + + Sbjct: 457 NAKPHPLLSKKALQILNIDYNDAITTMLYTDYFNLLLQNKQIVILNAKKYNGKLSTSCNL 516 Query: 716 LQRLLV-LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 RL + F L LD + D+ + P S ++ Sbjct: 517 FLRLQLKHVIPWFDPKLLTPATNSLDIKSQDDHKLTT----------ISHSFPSVLSVTD 566 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK----NTPE 830 I+ LI +PY YA++IL L + ++P +D G H ++ + K + N + Sbjct: 567 IESLIRNPYGFYAKKILGLYKKDNIWEEPKISDFGNFIHKVLEKYSKNYDKQYVCLNLLD 626 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + I + LP + IW+ S +F+ + + + + ++I+ I ++ Sbjct: 627 KQAALINIGNHILYSTILPAYTKKIWQIKLTAFSKTFILFDIERRKNCKEIYFEIKGELR 686 Query: 891 --IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 I I + G ADRI++ KS + I DYKTG P K+ + + PQL +E L Sbjct: 687 LNIAGQNIKIIGIADRIEVSKSNDITILDYKTGTIPTKKEIEFGLSPQLIIECLMLLENG 746 Query: 949 F--SQIDCRKVANLFYIRLKQK----------------------------------FKID 972 F + + L I + + + Sbjct: 747 FNIKSFSNLETSQLSNIHIGRDTVICSRAQVVNPSYLKNYKSSCINKKLTIAYVRITSTE 806 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + E K LI ++ + F + ++Y HL R Sbjct: 807 PYIQTTEIDLNIETLHKHKAGLIRLLEYYVT-NKSFS----YDFNLSNYNDYRHLTR 858 Score = 63.8 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 44/219 (20%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + +++ V I +P +L+ I+ K LP Sbjct: 7 FLQNFAEYIIDKLKKGI------------EVQIILPNNLLCLKLKQILIDKYKIK---LP 51 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 II + +K +D +S I+ L L+ +I ++ Sbjct: 52 IIIPFNAIFFKKNESDY---------ISKIEELFILSSIITEYKE--------------- 87 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 LP + ++ A+ L + + + + ++ +W FL+I W Sbjct: 88 -LPFNLEESLKSAEILRKLFNDLIINNID---IKLIEVYNNSNYWQKIYKFLEICFLKWK 143 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 + + + ++ +++ E + K II+AG Sbjct: 144 KAISLTQKYTKTIHEFNILQEEIIKIKK-RDKRIILAGI 181 >gi|113868366|ref|YP_726855.1| hypothetical protein H16_A2392 [Ralstonia eutropha H16] gi|113527142|emb|CAJ93487.1| two domain protein: Inactivated superfamily I helicase and RecB family exonuclease [Ralstonia eutropha H16] Length = 955 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 159/1043 (15%), Positives = 307/1043 (29%), Gaps = 119/1043 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF--IEITGK 70 P F + A F P A + VPT I +R Sbjct: 8 PGPDFLDQAATA------AWYFLDRCGAPEAGAH--VVVPTAAQIPGVRQALDAAARASG 59 Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 +LP + +LG + + L P S RLL + + + + Sbjct: 60 SPRLLPRVLTLGHWLLD-------LPPEGAPVRSPAARLLAVQQAV-----------RGQ 101 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + A L++ L I D + + A + + A L+ Sbjct: 102 DWLRRAFGAQNETAAWGLSQTLLSICDELNARWLE----DAAIRDDDEIDGDDRAGLLQG 157 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 A + L E +A +A + G +PA R + ++ Sbjct: 158 ALERTYSHLSERFLGEEARIVLAFWQALS--------------GPDDPLPARRRALRELS 203 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G ++ P + + + L + Sbjct: 204 QQLRGPVIWIAPTPPTP------------------------LEAAFLRDAAELVPVLQVG 239 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + D +P + + ++ + +E Sbjct: 240 YDWTGQGGSDADWYQTLLALWPEARIVDDAEAVAPAPAMPALPPQRPSIRVVGSARFEDE 299 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A + A L L+E +++ AL+ DR +ARR + L R G + G LSTT ++ L Sbjct: 300 AAAAAAQLVQWLNEGRRQVALVAHDRVVARRARALLARAGAPVRDETGWKLSTTRAAAAL 359 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + + + D A+ L+K P PE A AL +R + L+ Sbjct: 360 MRWFDLLVRDGDTAALLDLLKSPFC---LPEVAGRGAAIALLERQVRREGITGGWARLRQ 416 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L H P + + ED+ A I L + Sbjct: 417 LF----------GHAPTAAQQAATEDEGAAEAPRHAAHALIAVLADEAARWPRGLAQHPL 466 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + W + L + + + + + ETG + E+ +++ Sbjct: 467 ATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPLDETGGHATLSQGEFRAMLS 526 Query: 611 RLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L++ K + IL +R+ F+ +++ G ++ P + A+ F S M+ Sbjct: 527 ALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAAELMFFSNQMR 586 Query: 670 SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727 +L+L+ E Q A D + ++ T P S W++RL Sbjct: 587 RELDLEDREARFAQQARDLAEVLLNNDDVVLTWQRYGSRGEPHHVSGWIERLA------- 639 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + G + T P P P +S L PY +A Sbjct: 640 -ACCARAGVSIEASAAAQAHETFADPQGMPAPAAEPALVPVRWSAQAYNMLRRCPYQFFA 698 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIID 840 R+L L + + ++ + G H+++ K + + +I + Sbjct: 699 GRMLGLAGLETVSDELEKREIGEHLHHVLLRYHKDLQARRERGETLAEDRRLARLAEISE 758 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAKMAIE---SIGI 896 + F I + + ++ S++ + ++ + A + + + Sbjct: 759 AVFGALMAEDGNAIAYYRRWREVMPSYVAWQSAREAEGWFWRGGELDAGIDLPMPDGQPL 818 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAGSFSQIDC 954 LTG DR+D G + DYKT + + A+ D QL Sbjct: 819 RLTGRIDRLDQGPGGAHAVLDYKTQSATRLKRKLAEVGEDCQLPFYGLL----------R 868 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 A ++ L+ + + E + L+ ++ + Q Sbjct: 869 ADAAAGSWVSLEGAREGAAAAQREVGLPDFEAAVIWLER--QMRDDVMRLRQGARLPAFG 926 Query: 1015 SEKSNIQSEYDHLARVAEWREEY 1037 + + L R W Sbjct: 927 DASACLYCTARGLCRKGFWESTA 949 >gi|251764598|sp|A9KTE7|ADDB_CLOPH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB Length = 1147 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 118/913 (12%), Positives = 249/913 (27%), Gaps = 112/913 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + + II + ++L + + K + + + E L + Sbjct: 117 GFVEEMKSIISELAQYSIHTDELQKMKEVAKGKPLLNHKLTDIMTIYQAYEEFLQDKY-I 175 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + L + I + G TG P+ +L+S + V +D Sbjct: 176 NSEEILDLLCDVIDDSSFVNDSE-ICLDGFTGFTPSQYKLLSHLMKKAKSVTVTITMDES 234 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRS 324 N H + L+ K+ + L K + + Sbjct: 235 Q-----------------INRKQEEHQLFYLSGKMAEKLTDLAITQKIEIKPPILVASEN 277 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMS 381 S F +I + + D+++ A + EA I L Sbjct: 278 GGYSYRFHNSMALSALEKNIFRYPYKSFTEEQDDISITAAKDPMAEARHAVIEITRLLRE 337 Query: 382 LDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + K A+++ + + EL GI + + T L S L+ + Sbjct: 338 EEYRYKDIAIVSGAMEVYGDIVKRELELAGIPCFVDHKKNILTNPVVEFLRSALDVVTHN 397 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D+ AI +K L F E L E + + + + + Sbjct: 398 FDYEAIFRFLKCGLTDFTMDEIDL------FENYVIAFGIRGKYRYEHEWERKYKTNYEV 451 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + + + + +E L L + + I + + Sbjct: 452 DLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYHIEEKIHIFVEKFKAQ 511 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + KL +E+ + + +F +++E E+ DI+ V Sbjct: 512 GEK-----EDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILDTGFREAKVGL 566 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLK 675 + + +RL + L G+N+G+ PK LS + ++ L Sbjct: 567 IPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQLFADHEIELS 626 Query: 676 TAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR----------LLVL 722 ++ + N T+ L S + + +I + +L + Sbjct: 627 PTKRQTAYLTEFYLYLNLTKPQNKLYLYYSKLDVSGKSIRASYLLGKISKIFPKLKIYDA 686 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------ 770 D L Q L + + + + Sbjct: 687 DRKSREDELLGTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKGRISLDKVLQGVF 746 Query: 771 -----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 S + +++ +A + + L L+ + D Sbjct: 747 YQNYEQGLTKEVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEERQ--EYKISMPD 804 Query: 808 RGTLFHNIITELIKKRINKN------TPEINHLM-KQIIDSH---FEKENLPPHIDIIWR 857 G+LFH + K + ++ + ++ + F L + Sbjct: 805 IGSLFHEALERFSKALKELDISWHELPEDVRISLGERCVREAVENFGNGILESSKRSAYL 864 Query: 858 H-LFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV 913 +I + + Q E ++L G DR+DL + G + Sbjct: 865 ATRVERILQRTTKTLTHQLQQGVFEPGSYEQYFSH--ADRYLNLRGRIDRVDLYEQDGKL 922 Query: 914 D--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQK 968 + DYK+G + QL + +A Q + A +FY L Sbjct: 923 YVKVIDYKSGSTSFDLMNLYYGLQLQLGVYLSAAMELMKEQYPNHEIHPAGVFYYNLDDP 982 Query: 969 FKIDCITNDKKKY 981 + ++ Sbjct: 983 IVTKSSSVEEDIE 995 >gi|160881548|ref|YP_001560516.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg] gi|160430214|gb|ABX43777.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg] Length = 1171 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 118/913 (12%), Positives = 249/913 (27%), Gaps = 112/913 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + + II + ++L + + K + + + E L + Sbjct: 141 GFVEEMKSIISELAQYSIHTDELQKMKEVAKGKPLLNHKLTDIMTIYQAYEEFLQDKY-I 199 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + L + I + G TG P+ +L+S + V +D Sbjct: 200 NSEEILDLLCDVIDDSSFVNDSE-ICLDGFTGFTPSQYKLLSHLMKKAKSVTVTITMDES 258 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLA-KLLDFLDIKREDVKRLGNVSNEMYGRS 324 N H + L+ K+ + L K + + Sbjct: 259 Q-----------------INRKQEEHQLFYLSGKMAEKLTDLAITQKIEIKPPILVASEN 301 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMS 381 S F +I + + D+++ A + EA I L Sbjct: 302 GGYSYRFHNSMALSALEKNIFRYPYKSFTEEQDDISITAAKDPMAEARHAVIEITRLLRE 361 Query: 382 LDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + K A+++ + + EL GI + + T L S L+ + Sbjct: 362 EEYRYKDIAIVSGAMEVYGDIVKRELELAGIPCFVDHKKNILTNPVVEFLRSALDVVTHN 421 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D+ AI +K L F E L E + + + + + Sbjct: 422 FDYEAIFRFLKCGLTDFTMDEIDL------FENYVIAFGIRGKYRYEHEWERKYKTNYEV 475 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + + + + +E L L + + I + + Sbjct: 476 DLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYHIEEKIHIFVEKFKAQ 535 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + KL +E+ + + +F +++E E+ DI+ V Sbjct: 536 GEK-----EDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILDTGFREAKVGL 590 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-----DLNLK 675 + + +RL + L G+N+G+ PK LS + ++ L Sbjct: 591 IPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQLFADHEIELS 650 Query: 676 TAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR----------LLVL 722 ++ + N T+ L S + + +I + +L + Sbjct: 651 PTKRQTAYLTEFYLYLNLTKPQNKLYLYYSKLDVSGKSIRASYLLGKISKIFPKLKIYDA 710 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY------------ 770 D L Q L + + + + Sbjct: 711 DRKSREDELLGTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKGRISLDKVLQGVF 770 Query: 771 -----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 S + +++ +A + + L L+ + D Sbjct: 771 YQNYEQGLTKEVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEERQ--EYKISMPD 828 Query: 808 RGTLFHNIITELIKKRINKN------TPEINHLM-KQIIDSH---FEKENLPPHIDIIWR 857 G+LFH + K + ++ + ++ + F L + Sbjct: 829 IGSLFHEALERFSKALKELDISWHELPEDVRISLGERCVREAVENFGNGILESSKRSAYL 888 Query: 858 H-LFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV 913 +I + + Q E ++L G DR+DL + G + Sbjct: 889 ATRVERILQRTTKTLTHQLQQGVFEPGSYEQYFSH--ADRYLNLRGRIDRVDLYEQDGKL 946 Query: 914 D--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQK 968 + DYK+G + QL + +A Q + A +FY L Sbjct: 947 YVKVIDYKSGSTSFDLMNLYYGLQLQLGVYLSAAMELMKEQYPNHEIHPAGVFYYNLDDP 1006 Query: 969 FKIDCITNDKKKY 981 + ++ Sbjct: 1007 IVTKSSSVEEDIE 1019 >gi|323489924|ref|ZP_08095146.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2] gi|323396431|gb|EGA89255.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2] Length = 1158 Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats. Identities = 134/1057 (12%), Positives = 300/1057 (28%), Gaps = 160/1057 (15%) Query: 53 TKRAIQELRSEFIEITGKKSTIL--PIIKSLG------------DVVEEKFTADLLLSYN 98 T+ +E+ E L P S ++ + L++ Sbjct: 15 TRFVQEEIVDELKRQADGDPIFLIVPDQMSFSTEYRLAAAYNMNGMIRAQAVTFKRLAWR 74 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 + V I R + L + ++ + L A + ++ Sbjct: 75 VLQEVGGISRREVDTFGYRMLIRSLLEDNREEF-----QLFRRAAGKRGFTDQIEQLVKE 129 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAA----DFLKIASKYWTERLVELNASSPVGYQIAL 214 +L+A++ L++ RL ++ S +AL Sbjct: 130 FARYCVDCGELNAIRFSLVEAGAPKTLLDKAQDLELILTEIENRLGKVFVDSEG--HLAL 187 Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 + + H I I G ++ + H + +D Sbjct: 188 LSEKIPHSDLIKSSTIYIDGFVTFTAREYEILFELMKHAKSVTIALPMDEKTDP------ 241 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 N S S + + L + I ++ L Sbjct: 242 -----NDEQSLFYQSANTAHRLTEQAAKEGIDIDNSVYL---------------ALPRRF 281 Query: 335 DTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSAL 391 ++ + + + P + + +V+L+EA N R E ++A A+R + + + A+ Sbjct: 282 MNPELEHIERHFDDFPIQKIQGQGNVSLVEASNRRAEMHAVARAIRDQVRNGFRYNEIAI 341 Query: 392 ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + + +++ I IS + S+L ++ + +I V Sbjct: 342 LYRQPEIYDELIHTIFSQYEIPYFISQKKSMLHHPLIEFSRSVLESVVSNYSYESIFRAV 401 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 K L P + LE + D K + + +T + + Sbjct: 402 KTDLFFPQGPATKWRERSDLLENFVIANGIYGERWFDEKRWFYKKYRGLEFHTSIQTDEE 461 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT---------CL 561 ++ + L+ PL K + I++ L + L Sbjct: 462 LAAQVELHAVRDLIR------EPLAQLKEQLKLSKTGRDIAESLFLFIEKMDVYAKIQDL 515 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + EHR L E+ + + + + + + I+ + Sbjct: 516 REREESEHRLLAATEHEQAWNQWVGVLDQFVLMFGEKEVDLPTAVKILDEGFETLEFSRI 575 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LK 675 + + +RL++ ++ + G N+GV PK ++ L+ + Sbjct: 576 PPSLDQVMVSKIDLARLMDIKSVFVVGANDGVLPKRIEQDGLLTDTDREWFAQIGFELAP 635 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRS---LRENNIPTIASRWLQ--------------- 717 T++ + + A + + T S E + S ++Q Sbjct: 636 TSKMRLMDETYMVYRAFTSASDLLTVSFPIADEEGKALLPSLYIQKLKDMLSIDTVPAVI 695 Query: 718 ---RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------------- 751 L+ + ++ + + R + + + Sbjct: 696 DPEELVDVSPMEYISHPRASLAYLTSQLRSGELSAEWRAVYHYYEEDPFWSSIINRILSP 755 Query: 752 -----PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 R PL P + S S ++ P+A Y L+L+ + Sbjct: 756 IKPNKADPLREAIAEPLYGTPISSSVSRVETYYGCPFAHYVAYGLRLEERS--QYKLAAP 813 Query: 807 DRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL--------PPHIDII 855 G LFH I + + + + + + E+ + H Sbjct: 814 AMGDLFHAAIKWISDEVLRLGISWSSLTQKQCQNLAKEAIEQLSPYFVNHILISSHRYRY 873 Query: 856 WRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA---------KMAIE-SIGIHLTGFAD 903 +H I +++ + S I + + +++++ +++ G D Sbjct: 874 IQHKLEGIIRQTAYMLSKHAKVSGFVPIALEVGFGPKETIPPLEISLDRGRKMNVRGRID 933 Query: 904 RIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVA 958 RID G + I DYK+ + Q AL + + A Sbjct: 934 RIDSTDIHGKPYLRIVDYKSSKQGLDLSNVYHGLSLQTFTYLDVALTHSERWLGEEAEPA 993 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + Y + + + K +A+EL E+ K+ Sbjct: 994 GVLYFHM-----HNPMLKLTKLLTAEELDEEMAKSFK 1025 >gi|331088207|ref|ZP_08337126.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408451|gb|EGG87917.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium 3_1_46FAA] Length = 1131 Score = 195 bits (496), Expect = 3e-47, Method: Composition-based stats. Identities = 118/916 (12%), Positives = 254/916 (27%), Gaps = 138/916 (15%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASSPVG 209 + ++ +E L E + D ++ + + E L E + Sbjct: 121 EVKSVLSEFAQYGVDFERLDDFMKEVPPESYLHYKLDDIRTIYEKFEEYLSEKYIT--KE 178 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + ++ + + + G TG P RL+ + + ++ +D Sbjct: 179 EMLDVLSDAVPYSDILKGSVVAMDGFTGFTPVQNRLIGELFSVCEKVMITVTMD------ 232 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 ++ + + + L+ K+ +++ + R S+ Sbjct: 233 -----GRENPYVYEHPYQIFALGKQMVTSLMKIAGEKKTEIEEPICLFERPVYRFRDCSE 287 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 T++ V+L E + +EA +A ++R + Sbjct: 288 M-------AFLETELFRYSGAKYNGSCESVSLHEVRSPGKEAKYVAESIRRLVRTKGYRY 340 Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + A+I +D N+ V F I + + + + SLL I + + + Sbjct: 341 RDIAVIASDMNVYADVLEKACASFDIPVFMDHKKSILLNSFVEYVRSLLGMIQENFTYES 400 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + ++ +F E I K K Sbjct: 401 VFRYLRSGYCEFTEDEIDRLENYCLAL-----------GIKGYKKWQQAWARKTKEA--- 446 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTV 558 EE+ E L ++ I PL+ K T +++++ + + + Sbjct: 447 -------DEEEVEKLNHLRVKFVEKINPLMFVSRQKKKTVLDITLAVYEFIAGEHLQEKL 499 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 Q ++ +E+ + + LF K E E+ +++ + V Sbjct: 500 EQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCELLDAGFEEAKV 559 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----- 673 + I +R+ + L G N+ + P N LS + Sbjct: 560 GVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSERDREKFKEKDIS 619 Query: 674 -LKTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD 729 ++ I A L + S + +Q L L Sbjct: 620 LSPGPKEKIYIQKFYLYTALTKPTELLSLSWSKVSGEGKSLRPAYLIQELRRLFPNLSVV 679 Query: 730 NLKKRGQCYLDWTRK--LDYTTKQPHYKR------------------------------- 756 + + R + TR+ ++ K +R Sbjct: 680 DEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEWKELYTWFQKDGRNKKEIESILNAG 739 Query: 757 ----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 P+ L + S + +++ + YA + L+L + + Sbjct: 740 FLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCAYAHFLSYGLRLSDRE--EYGFEAL 797 Query: 807 DRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDSHFEKEN--------LPPHIDII 855 D G + H + K + K L ++ID E+ + Sbjct: 798 DLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDESVEESVIDYGNTVLFSSARNEY 857 Query: 856 WRHLFHKISH---SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 ++ L + + + + +G DRID Sbjct: 858 MITRIKRLIRTSVWALTKQIE-KGDFLPSGYEMQFG----------SGKIDRIDTCFDND 906 Query: 913 VD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLK 966 +TDYKTG + + QL + A + + A +FY R++ Sbjct: 907 CVYVKVTDYKTGMKSFDITALYHGLQMQLPVYLNAALDVEQRKHPHKTIVPAGIFYYRIQ 966 Query: 967 QKFKIDCITNDKKKYS 982 + T D + S Sbjct: 967 DPIVSEEKTQDAVERS 982 >gi|332312756|gb|EGJ25851.1| ATP-dependent helicase/deoxyribonuclease [Listeria monocytogenes str. Scott A] Length = 1163 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 103 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 161 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 162 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 219 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 220 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 271 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 317 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 318 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 377 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 378 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 437 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N + ++ L+ + L + L KT Sbjct: 438 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 497 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ +S+L + +E Sbjct: 498 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 557 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 558 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 617 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 618 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 677 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 678 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 737 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 738 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 797 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 798 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 855 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 856 RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 915 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 916 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 975 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 976 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1035 Query: 991 LKNLI 995 +K LI Sbjct: 1036 MKGLI 1040 >gi|47092375|ref|ZP_00230165.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b H7858] gi|226224876|ref|YP_002758983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes Clip81459] gi|47019152|gb|EAL09895.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b H7858] gi|225877338|emb|CAS06052.1| Putative ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465846|gb|EGF37034.1| ATP-dependent helicase/deoxyribonuclease subunit B [Listeria monocytogenes 1816] Length = 1157 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 97 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 214 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 265 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 312 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N + ++ L+ + L + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ +S+L + +E Sbjct: 492 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 612 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 672 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 732 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|326776761|ref|ZP_08236026.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] gi|326657094|gb|EGE41940.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] Length = 1208 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 136/1120 (12%), Positives = 271/1120 (24%), Gaps = 178/1120 (15%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A V + +++A ELR G + P + Sbjct: 65 TLVESVAARVNRGADPARVLVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSFCYAL 122 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ + L S Sbjct: 123 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEK---AGLAHVRWPDELRSCLTTR 179 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 180 GFADEVRAVLARSRELGLGPDALAAFARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAEL 239 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG----------- 255 + R E + G+ + + + PA RL+ +A + Sbjct: 240 VHRAVLLAERPEVAERLAGSYDAVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEE 299 Query: 256 ----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-----------LL 300 G A T Y+ Sbjct: 300 GRGDGGRGDGGRGEEARAGGARSEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAF 359 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D V L G + + + ++ P + V Sbjct: 360 RRADGDPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDGGRVE 419 Query: 361 LIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDIS 416 E +IA LR + E+ + + L+ A V+ LT G+ +++ Sbjct: 420 TYTYPTASTELENIADLLRRAHLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVD 479 Query: 417 AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE--- 472 PL + L + L + A+ L+ + ++ + E Sbjct: 480 GDDLPLRHEPAVAPLLTALRTVA----TAALRGLLDGDRDEADGADRDEADGAGRDEAGG 535 Query: 473 --------------------------------------LVALRGNKNSYDIMDLKSLVLD 494 A R +D ++ + Sbjct: 536 ADPGETGGAYQGDTAGADPGETAGADPGETGGADPGETGGAGRAGARMSSWLDTETALTL 595 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLV------DHILQCITPLVTYKTNKNSTC-GN 547 + + + + D+E A + + + + + T+ + G Sbjct: 596 LTSPLGSMDAADLRRLGRALRDEERAAGIRVPAPSDELLARALAEPERLVTHDPAYAHGA 655 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNL----WFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + L+ E W + + + A Sbjct: 656 QRLGALLRKARELLEGGGTAEEALWALWNGTPWPGRLERAALRGGAGGRNADRDLDAVCA 715 Query: 604 EWIDIITRL-------------------IDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + I +T+ + + + ++ S+ L + + Sbjct: 716 LFETAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVRLMTAHRSKGLEWRLV 775 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIY 699 +L G+ EG+WP + L L A L+ Sbjct: 776 VLAGVQEGLWPDLRRRGSLLEADRIGGDGLAEPLTPGALLAEERRLFYVAATRARDRLVV 835 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY----- 754 T + SR+L L V +R +L TT P Sbjct: 836 TAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLAVAALVAELRATTVDPAASEALR 893 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 R QP T S S + QL Sbjct: 894 EAAAHRLARLAALTDDEGQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQPVTLSGSALDQL 953 Query: 779 IN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 N + R + G + H ++ + + ++ Sbjct: 954 ANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASSRTPADLDVLMERLD 1007 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-- 895 + + + + FL + + +E+ Sbjct: 1008 SVWNGLAFDAPWKSEQEKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYA 1065 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + + G DR++ G + D+KTG P K+ PQL++ A++ G+ ++ Sbjct: 1066 VRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVASH--PQLAVYQLAVREGAVDEVFD 1123 Query: 955 R---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + ++L+Q + K A E Sbjct: 1124 GRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQEPLAGEW 1163 >gi|229828349|ref|ZP_04454418.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM 14600] gi|229792943|gb|EEP29057.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM 14600] Length = 1199 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 94/960 (9%), Positives = 247/960 (25%), Gaps = 140/960 (14%) Query: 150 KNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + ++ + ++ L G + A+ L + + + E + Sbjct: 116 DEIKSLLTEMAQYGIGPKEFADLAELTDMGSSFRRKAEDLSVIYRAFREAIE--GRYITA 173 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC---- 264 + + + I I G TG P ++++ + + V +D Sbjct: 174 EEVLERLAQLMDQSALIKDAVIAIDGFTGFTPIQKQVLAQMMRLASSIYVTLTMDPGERI 233 Query: 265 ---HIPTAIWNTITEKSTN----------ITSSNTTYSTHPQYSLAKLLDFL-----DIK 306 H+ ++ E + +P+++ A +L +L K Sbjct: 234 TGSHLDYELFAMTKEMGEGLVRLAGENRCPIEEPVCLTGNPRFASAPMLAYLEANLFRPK 293 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + + + + + + + + L A + Sbjct: 294 SRPYGKELSGLDGKETAGCSQADTKETASCAQSDAKENASRAQGESDPKMRQIRLGRAAS 353 Query: 367 EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 R+E +R + + + + + A + + + + Sbjct: 354 FRDELAFAGEEIRKKIRDQGGRYRDFAIVCANLSDYADYAGQIFDKMDLPYYLDQEQDIL 413 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + S L+ + ++ ++ LA + L + Sbjct: 414 FHPLVEFILSSLSLFTEDFSEESLMQQLRSGLAGIDPSDADLLERYIHARRIRGFARYRR 473 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 +++ +++ V + + + + + + + Sbjct: 474 PFSGRVRNFSQEQM------LRVEQLRKGIVADISDFRQSMCEENAVTRDRALAIYAYLQ 527 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + + N C E ++ + K+ + K + Sbjct: 528 --------AHEVEEKLEARANACRAEGDEIAASIHSRVFGLVMETLEKMSDLLGEEKMSL 579 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ ++ + +V ++ I +RL + TL + G ++ P++ + Sbjct: 580 SDFAQLLEAGLRAISVGTVPPSFDSVVIGDLERTRLEHIKTLYVLGASDAAIPRSAESSG 639 Query: 663 FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASR 714 S+ + L + +A + L+ + + ++ + Sbjct: 640 LFSQAEREKLREKQIDLAPGDRERAFMQRFYLYLALTKPSEQLVVSYARLSSDGSALRES 699 Query: 715 WLQRL----------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-------- 756 +L L L G L L +++ + Sbjct: 700 YLIGLICRLFPGLGVENLEGRADLQRLVTAPAALDYLPDALRSLSEKEPSREEGQLACAI 759 Query: 757 -------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + S S ++Q YA Sbjct: 760 YEVLKEDKNFTDRAEELFKTAFSEQGQDRLSERLIKRVSGDLIQGSVSRLEQFCRCAYAY 819 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQI 838 Y R L + + D D G L H + K+ + + L+++ Sbjct: 820 YLRY--GLLLQEEEEPEIDFLDMGNLHHQTLEFFSKRMKERKLSWKEISDSDAEALLEEA 877 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHS---------FLEHEEKIQSSIEKIFVNIPA-- 887 + + +++ ++ + E+ + + Sbjct: 878 FRNAVGQM---ERAELLENRRQAQVIRRMKSVLRCSIWALREQVTRGDFVPEEFEMSFGP 934 Query: 888 -----KMAIESIG---IHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDP 935 M + + L+G DR+D G + DYK+G + Sbjct: 935 RDQLSSMRFQLGEREKLQLSGKIDRVDCMRTPEGIYVKVMDYKSGNQKLDLTRLYHGLQI 994 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL L +A A LFY + + ++ +E+ E L L Sbjct: 995 QLVLYMSAALEKLGRGEKKAHPAGLFYFHIDE-----PWVKSREGAGPEEIQEDILDELK 1049 >gi|289577483|ref|YP_003476110.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9] gi|289527196|gb|ADD01548.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9] Length = 1153 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 120/948 (12%), Positives = 254/948 (26%), Gaps = 142/948 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K +++ I ++ E + L + + + + + E L N Sbjct: 117 GFIKKISETITELKRFEVSPDKLLEIAETIDYLGLREKLRDISLIYSKFEESL-HQNYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L E+ + I G TG P R++ + + V +D Sbjct: 176 QEDELALLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSC 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 ++ I T+ T L ++ +I E L + + + S Sbjct: 235 ---NFSEIDTTDLFYTTKKTEDK------LLEICQRNNISYEKPVDLNGGTPKRFRESEE 285 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 +S + + D++L +A N E A + + + Sbjct: 286 LSFLEKHFFSYPYKV----------YPSETKDISLFKAVNVYSEVEETARDIIRLVRDKG 335 Query: 387 ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + + D + VK +++GI I I + +TSL + K Sbjct: 336 LRYSEIVVAARDLNRYHKLVKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K A + L + K L ++ Sbjct: 396 YESVFRYLKTGFANLEIEDISLIENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEK 455 Query: 503 THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + L T I + Sbjct: 456 EIIEKVNEIKEKITIPLQGFYKKFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKE- 514 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 E + + + + +++E K ++ I++ D + Sbjct: 515 -------EKEYDTANQYAQVWDIVVDVLDQLVEVIGGEKVTVEQFAKILSIGFDEYQIGT 567 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 + + + N L + G+N+G++P + L+ + L E Sbjct: 568 IPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASHFDERILTDEDREILTSHDVELD 627 Query: 679 -----KYIGQAAHDFEMANG-------------------TRHLIYTR------------- 701 K + + +I +R Sbjct: 628 NDTKTKVFEEQFLVYTALTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFSN 687 Query: 702 ------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKR 734 + N + S WL D + R Sbjct: 688 VVEMDTAEENLNRVSTPSPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPRLTR 747 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + +T +++ L +S S +++ P+A + + LK Sbjct: 748 ALEGIYYTNQVEKVPAHK-------MKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKAR 800 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN 847 + D G HNI+ K + + + + I+D +K Sbjct: 801 ERK--IYSFEPPDLGIFMHNILDRFSKALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIP 858 Query: 848 L----PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAI- 891 +I + ++ E +SS + + + K+ + Sbjct: 859 GYILNSSPRYKFLAERLKRILSNAVWIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIELS 918 Query: 892 ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947 I+L G DRID+ ++ I DYK+G ++ QL + A+ Sbjct: 919 NGEEINLIGRIDRIDIFKKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDAILES 978 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + A +FY ++ I K S ++L ++ K L Sbjct: 979 AIKEGTTLNPAGVFYFKID-----YPIIKADKDMSDEDLQKEIFKRLR 1021 >gi|295702781|ref|YP_003595856.1| ATP-dependent nuclease subunit B [Bacillus megaterium DSM 319] gi|294800440|gb|ADF37506.1| ATP-dependent nuclease, subunit B [Bacillus megaterium DSM 319] Length = 1166 Score = 195 bits (494), Expect = 5e-47, Method: Composition-based stats. Identities = 116/972 (11%), Positives = 245/972 (25%), Gaps = 142/972 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADF 187 + + L L + + + L ++ + L +K + Sbjct: 102 HQKEELRLFANSSEQAGFIEELEKMVKEFKQYTVDAPSLEEMKKKLQAEDEKVLADKLHD 161 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L + ++L+ + L+ + + I + G P ++ Sbjct: 162 LHLIYGELEKQLMTKYVD--GEDYLKLLSEKVASSAYLAQAKIYVDGFHHYTPQELTVLV 219 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + D I N + + L L I Sbjct: 220 ELMKVCREVKIAVTSDYSYQDFIPNDLHLFRLTSETYQE---------LMGLAAENGIDI 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++ E P Q ++ L+ A + Sbjct: 271 QEPILFNEQKR------------HQNSPELAYLERYYDERPTPEFQSEPENIQLLPAVSR 318 Query: 368 REEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLST 423 R E IA + + + + ALI + + ++ + I I + Sbjct: 319 RAEVEGIAREVLSLVRDRGYRYRDIALIVRNAEDYHDLLQTIFQDYEIPYFIDQKRAMFH 378 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKNS 482 + S+L + + I +VK L + + R + + LE L Sbjct: 379 HPLVEFVRSVLEVVSGSWRYETIFRVVKTDLLFPLSSDVHRLREEMDELENYVLAYGIQG 438 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + + ++ + E+ ++ + + K Sbjct: 439 SKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ-----KLKQ 493 Query: 543 STCGNLSISDWTKLT--------VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 G + + + L+N C +E + E+ K + LF + +E Sbjct: 494 GKIGKEKAEELYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQFVEM 553 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 K + + D+ +D + + SRL + + G+N+GV Sbjct: 554 MGEEKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVNDGVI 613 Query: 655 PKNTAKNPFLSRVMQSDL---NLKT----AEKYIGQAAHDFEMANGTRH-LIYTRS-LRE 705 P + LS + L L +K + + + + L + E Sbjct: 614 PAKPKSDGLLSEKEREQLLESGLLLAPTGRQKLFDEQFLIYLALSSSSEKLYVSYPLANE 673 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 + S + R+ L L + + T Sbjct: 674 EGKTLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYITNPLTSIAHLASQLQGWK 733 Query: 766 QPRTYS----------------------------------------------------FS 773 + S S Sbjct: 734 RHYPMSSAWWDVYNFYVENPDWNSYSRKVLSSLFYKNEAKRLTKKTSQRLYGKHIQASVS 793 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII----------TELIKKR 823 +++ PYA +A LKL F D G LFH + + K Sbjct: 794 RMEKFEACPYAHFASHGLKLKERKVF--KLAAPDIGELFHAALKMISDELRGGQKEWKNL 851 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS--FLEHEEKIQSSIEK 880 K+ +++ + + E L + H +I + E S Sbjct: 852 TRKDCQQLSTAAVNELAPRLQNEILLSSNRHHYLTHKLQQIIERASLVLSEHAKMSGFVP 911 Query: 881 IFVNIPA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKK 926 + + + + + L G DR+D +S + I DYK+ Sbjct: 912 VGLELGFGPSAELPSMQFTLPNGHTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKALNL 971 Query: 927 ETAQKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + Q+ + A + Y + + + N K Sbjct: 972 VEVYYGLSLQILAYLDIVVTYAEQLLHDNRGALPAGVLYFHV-----HNPMINSTKALQP 1026 Query: 984 DELSEKSLKNLI 995 D++ + K Sbjct: 1027 DQIEAEIFKKFK 1038 >gi|254480462|ref|ZP_05093709.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium HTCC2148] gi|214039045|gb|EEB79705.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium HTCC2148] Length = 869 Score = 194 bits (493), Expect = 6e-47, Method: Composition-based stats. Identities = 105/722 (14%), Positives = 221/722 (30%), Gaps = 95/722 (13%) Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRFGI 411 + + + ++E +IA ++ ++ AD N R L R Sbjct: 193 AAGEATIQARSYADRQQELSAIARWAAQEYQDDPDCSLGILLADMNGDRAPLEFLMRREF 252 Query: 412 ----------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ S GI L +L+ + + LV + Sbjct: 253 DSLGDKYNSLPVNFSTGITLDRAPVIRDALRILSVCGETLPMTDLLGLVNSRFTDCNEAD 312 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 R L L ++ N + SR + E + Sbjct: 313 SD--RVVRLLHQ-------------------LFDDGEEQLNLGRLRFLSRSVKAGGEQGL 351 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + C SDW K L L +L F++ Sbjct: 352 AMGERLASCSE--------LRLQRLTQRPSDWVKSICDVLGVWAWPGEGPLDSLEFQQVE 403 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 +L + N + ++ R + S + +LG LE+ L F Sbjct: 404 AWYKALQEFSGLDSLAGRVNFHTALGMLKRCCQNR-ISQPQTADSGIQVLGPLEAAGLPF 462 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANGT-RHLI 698 D++ GL WP + NPF+ +Q ++ ++E+ A+ + I Sbjct: 463 DSIWFCGLQGNRWPAPSRPNPFIPMALQRKHDMPHSSSEREWNYASTLTDQYRAACDRFI 522 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + S + + P + S L + + + + +L + +Q + Sbjct: 523 ASYSRQLDGAPEVPSPLLGAFPL----EHMEATVLIPEQWLAQASA--SSLEQNLNAQAP 576 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 E ++Q N P+ +A + L L+ + ++ DRG++ H+ + Sbjct: 577 MVSKSEMSHIRGGSGILQQQANCPFRAFASKRLLLEPLGDYRAGLSAADRGSILHDALYV 636 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDII--------WRHLF 860 L + + + + + ++ +P + ++ Sbjct: 637 LWGEIND------SAALHALGREALDEKIASASAAAINAVPESVRLLVGMHCLDLESQRL 690 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 K+ +++ E + + P + + + L DR+D L+ G + DYK+ Sbjct: 691 QKLMTQWVQLELARNP-FKVVAREEPIDFKLGELSLSL--RVDRVDELEDGSRIVIDYKS 747 Query: 921 GDNP-KKETAQKLIDPQLSLEAAA--LKAGSFSQIDCRK--------VANLFYIRLKQKF 969 G + ++ PQL L A ++A SF+Q+ R V + ++ Sbjct: 748 GRSSLADWLGERPSQPQLPLYGLAENVQALSFAQVRARDCRMQGLGSVEGIAGVQ---SD 804 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + L + +NL ++ T G + + + L R Sbjct: 805 IAKAVKRYSDCEDWSSLMTQWQQNLGKLATDFLAG----YAQVDPLPAACNYCGLQALCR 860 Query: 1030 VA 1031 V Sbjct: 861 VD 862 >gi|297543795|ref|YP_003676097.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841570|gb|ADH60086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1153 Score = 194 bits (493), Expect = 6e-47, Method: Composition-based stats. Identities = 120/948 (12%), Positives = 253/948 (26%), Gaps = 142/948 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K +++ I ++ E + L + + + + + E L N Sbjct: 117 GFIKKISETITELKRFEVSPDKLLEIAETIDYLGLREKLRDISLIYSKFEENL-HQNYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L E+ + I G TG P R++ + + V +D Sbjct: 176 QEDELALLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSC 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 ++ I T+ T L ++ +I E L + + + S Sbjct: 235 ---NFSEIDTTDLFYTTKKTEDK------LLEICQRNNISYEKPVDLNGGTPKRFRESEE 285 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 +S + + D++L +A N E A + + + Sbjct: 286 LSFLEKHFFSYPYKV----------YPSETKDISLFKAVNVYSEVEETARDIIRLVRDKG 335 Query: 387 ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + + D + VK +++GI I I + +TSL + K Sbjct: 336 LRYSEIVVAARDLNRYHKLVKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K A + L + K L ++ Sbjct: 396 YESVFRYLKTGFANLEIEDISLIENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEK 455 Query: 503 THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + L T I + Sbjct: 456 EIIEKVNEIKEKITIPLQGFYKKFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKE- 514 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 E + + + + +++E K ++ I++ D + Sbjct: 515 -------EKEYDTANQYAQVWDIVVDVLDQLVEVIGGEKVTVEQFAKILSIGFDEYQIGT 567 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 + + + N L + G+N+G++P + L+ + L E Sbjct: 568 IPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASHFDERILTDEDREILTSHDVELD 627 Query: 679 -----KYIGQAAHDFEMANG-------------------TRHLIYTR------------- 701 K + + +I +R Sbjct: 628 NDTKTKVFEEQFLVYTALTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFNN 687 Query: 702 ------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKR 734 + N + S WL D + R Sbjct: 688 VVEMDTAEENLNRVSTPSPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPGLTR 747 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + +T +++ L +S S +++ P+A + + LK Sbjct: 748 ALEGIYYTNQVEKVPAHK-------MKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKAR 800 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMKQIIDSHFEKEN 847 + D G HNI+ K + + + + I+D +K Sbjct: 801 ERK--IYSFEPPDLGIFMHNILDRFSKALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIP 858 Query: 848 L----PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE-- 892 +I + ++ E +SS + + + + I Sbjct: 859 GYILNSSPRYKFLAERLKRILSNAVWIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIGLS 918 Query: 893 -SIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947 I+L G DRID+ ++ I DYK+G ++ QL + A+ Sbjct: 919 NGEEINLIGRIDRIDIFKKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDAILES 978 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + A +FY ++ I K S ++L ++ K L Sbjct: 979 AIKEGTTLNPAGVFYFKID-----YPIIKADKDMSDEDLQKEIFKRLR 1021 >gi|229822912|ref|ZP_04448982.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271] gi|229787725|gb|EEP23839.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271] Length = 1178 Score = 194 bits (492), Expect = 7e-47, Method: Composition-based stats. Identities = 107/993 (10%), Positives = 267/993 (26%), Gaps = 140/993 (14%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P+S+I +++ + RL+ ++++L + A+ LA + D + Sbjct: 88 KPISSIGQIMLIKRLLARYQDQL-------------QVFRGQVKHQGFAEKLAQLFDELY 134 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + + E+L L + + + + + + + + + + Sbjct: 135 LGQIQPENLSQ--VPDLNQQEAKRLAELALLYQGFIQEIE--GQVLGHYHDLQRLDSYLK 190 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 +++ +L++T+ + L Sbjct: 191 AHPLNRPTYLVVDHHYFFNGQQLQLLTTLIQQCQAVWITLPLS--------QQAARSKAY 242 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 T+ Q L L + + + + Sbjct: 243 DPLIEVARHTYGQMQLLAQSLHLPVA--------EDWTINQVQEGYQANILTLAQAFENH 294 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397 + + + + V E D + E + + + + + ++T D + Sbjct: 295 LRLAPQELSQPLNQVKTHVIW-EHDAIQTEVRHTSNKIHQLVSQEGYRYRDILVLTRDMD 353 Query: 398 LARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 R + L + I + + L S L I ++K L Sbjct: 354 RYRPLVTALFEQNDIPYFYDHAVIMGQHPLVLWLESGLKLYRYRYQLADIFGILKSGLWL 413 Query: 457 FGFPEKYLSRA--------------KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 ++ + LE V L Y L A + Sbjct: 414 PADLRAAMAENPQDGPVLEEEFKAQVDLLENVVLANGYVGYRFAQLSFEWRFDQADRPYV 473 Query: 503 THVPHWQSRLSEEDKELAVL--LVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + L D + L ++ K + + + Sbjct: 474 NAAGQVTGQTYGQVVQALRESFLADFAPYQDLAQLTSFSGQKAAEWLYQWLEEVGVKDRL 533 Query: 560 CLQNVCLDEHRKLPNLW-FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + E L +E+ +TL++ + + + E+ +++ ++ T Sbjct: 534 IARRDQAIEKGDLALSRQYEQVWQTLTASLDEFYQLYGEAELTFSEFQELLLTGLNEATF 593 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--LKT 676 + + ++ + + G +E PK+ ++ LS + L L Sbjct: 594 HIIPPALDQVMVTSMESPQVQAYKVCFVLGADELTLPKHHQEDSLLSVANRQSLGESLLP 653 Query: 677 AEKYIGQAAHDF---------EMANGTRHLIYTRSLRENNIPTIASRWLQRL-------- 719 ++ + H++ + + + L + + S +LQ+L Sbjct: 654 YQQLRQSSQHNYSLELLMTQQVLLSASDRLYLSYVAMKGQQTVKLSPYLQQLAKQFHLPI 713 Query: 720 -------------------------------------------LVLGGTDFFDNLKKRGQ 736 DF + + Sbjct: 714 KTYTHTLIHQNQVKLSRLEFGRYPVQMSSLLQLVHHYSQQKDRPSAAFLDFLTLMASQNP 773 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 +L + P P+ L Q T S S+++Q DPY+ + LK+ Sbjct: 774 HTWVLLAQLFQFNQLPQNLTPETALALFGQKMTASVSKLEQYYQDPYSHFLLYGLKIRPR 833 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHID-I 854 + + G +H+ + + + + + E N ++ ++ + Sbjct: 834 QQLE--LNAAGAGDYYHDFLDKFTQAQEARPDFETNFASIQTLMAEDLRFNIFGTNPRMH 891 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAK--------MAIESIGIHLTGFADR 904 + + + FL ++ + + + ++ + L G DR Sbjct: 892 LIKRKLDQHLRQFLNVSLAQSQALTVQPVATELVFGSKQEAGLILPLDKGSLTLRGKIDR 951 Query: 905 IDLLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 ID S + DYK+G +D Q+ + + + FY Sbjct: 952 IDADPSQNYYQVVDYKSGKKTFNLVDFYYGLDLQVLTYL----KVASQRYPHAQAVGAFY 1007 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 L F + + + + + + L Sbjct: 1008 QSLAGGF--VKVDGKQMARLSQDGLDLAKNQLH 1038 >gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263844|gb|ADU00586.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length = 1038 Score = 194 bits (492), Expect = 7e-47, Method: Composition-based stats. Identities = 121/1041 (11%), Positives = 267/1041 (25%), Gaps = 110/1041 (10%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLG 82 + LV+ SV + + R ++R+ + G+ + P+++++ Sbjct: 33 SSLLVDTAVAHIAAGCDPESVLLLTGSARLSAQVRASITSALLGAGGRAAVREPLVRTVH 92 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY--PESPLSLPI 140 + + P RL+ A I R L ++D P Sbjct: 93 SYAFGVLRLAAQRNGSPPP------RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLR 146 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + + A L D++ L + W A F + + Sbjct: 147 PALSTVGFATELRDLMARCSERGIDPVALQRIGRHAGRPEWQAAGRFAQAYEQ------- 199 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + + + A G + G+ A + + +++ Sbjct: 200 -------IMLLRSAVGMAAPQATVPALGAAELVGAALEAFAMDADLLSAERSRVQLLLVD 252 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 P A + + + L L Sbjct: 253 DAQHLDPQAARLVEVLAAGAELTVIAGDPHQTVFGYRGADPALLRGDGPALILNRSHRCA 312 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + I+ +D + +A+ A + E+ IA ALR Sbjct: 313 APLADAIAAITRRLPGADASREFTGRGE-------QGTLAVRIAASPHAESALIADALRR 365 Query: 381 SLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLN 435 + + + ++ + + L G+ ++ PL+ L ++L Sbjct: 366 AHLVDGVPWDRMAVIVRSVPRTGASLGRALAAAGVPVEDPHPDVPLANQPAVQALLTVLE 425 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 A + D LV P+ + R + A + L V Sbjct: 426 ATAEKLDGERALALVTGPIGRVDPVSLRQLRRTLRRGVTAPDRGFGELLVEALGRDVAAL 485 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 L + + + + S K Sbjct: 486 PDEHAR-----------------ALRRLRAVLTAARRSAEQGGDPRQTLWQAWNRSGLQK 528 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + + +L ++ + + S + Sbjct: 529 RWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI------TGLSL 582 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---- 671 + + ++ + +D ++L GL EG+WP + + L+ D Sbjct: 583 PPARDDARSGDAISLISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLVDVIDG 642 Query: 672 -----LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN--NIPTIASRWLQRLLVLG 723 L + + + A R + ++ + + + S + L + Sbjct: 643 VAAPGHRLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDEAALPSPFCHELAAMA 702 Query: 724 -GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE--AQPRTYSFSEIKQLIN 780 L R L + + A + + Sbjct: 703 TEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCAAAQLARLATAGVHGA 762 Query: 781 DPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPE------ 830 DP + Y R L D D + L + L+++ + Sbjct: 763 DPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLERHGGARGRDVRSTLG 822 Query: 831 ------------INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS 877 ++ +D + K R ++ +FL+ + Sbjct: 823 SLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRHLEMLATFLKWRSDTRGE 882 Query: 878 IEKIFVNIPAKMAIES-----IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 + ++ I + G+ + G DR++ G + + D KTG +P + + Sbjct: 883 LTEVGTEIDVDGVVAGGDGDGPGVRVRGRLDRLERDSEGRLVVVDVKTGKSPVSKDDAQA 942 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 QL++ A+ AG + D L Y+ K T + E+ E Sbjct: 943 HA-QLAMYQLAVAAGLIADGDEPGGGRLVYL---GKTTGGRATERHQDAVTPEVRELWEA 998 Query: 993 NLIEIVTLLQNGEQPFISHLR 1013 + E Q F++ + Sbjct: 999 RVHEAAAATQGPS--FVARVN 1017 >gi|303229709|ref|ZP_07316495.1| putative ATP-dependent nuclease subunit B [Veillonella atypica ACS-134-V-Col7a] gi|302515606|gb|EFL57562.1| putative ATP-dependent nuclease subunit B [Veillonella atypica ACS-134-V-Col7a] Length = 1176 Score = 194 bits (492), Expect = 7e-47, Method: Composition-based stats. Identities = 106/968 (10%), Positives = 252/968 (26%), Gaps = 141/968 (14%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 + I + + + L L A + L + + ++L + Sbjct: 86 QSISQLGRTMLLSLVMKRKGAELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGA 145 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L + + E L L+ A + + + + Sbjct: 146 QRVSNGVLQKKLQELALCMSAYEEELQLHGQIDGDPIMD-LVHALPQSPLME-NCHVFVD 203 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P L+ + + +++ +P + K + Sbjct: 204 GFHWFTPVHFELLYMLFDLAVESVIT----VDLPADPKRILANKGRHGI----------- 248 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + ++ L+ ++ + +SF + + + Sbjct: 249 --FNRSVEILENLYKEYGT------------KLFFQSFTGHRGTPVLQSLEEHFFHGKHN 294 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKL-ELTR 408 + L+ A N EA +A + ++ + ++ + TR Sbjct: 295 TTAEHIPLVSAYNRECEADWVARDILSYIESSPNARYRDICIMLRESETYGDTLEKVFTR 354 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 +GI P++ ++T LL + + L+K L A Sbjct: 355 YGIPHFGDRQRPMNNHPLGELMTDLLGIVKHSYSRDIMFRLLKTDLTPLT------REAV 408 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + LE L + + +A + + ++ + ++ Sbjct: 409 DELENYVLEFGIDHLQWERDNWSYMRYVAGLSDEEQPDAPRHARVNASRQAIMDILIPWF 468 Query: 529 QCITPLVTYKTNKNSTCGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 T + + + + + D + E+ + Sbjct: 469 DFATSSDAHTGAEWCKHIYRVLEELQVPQRLYEWSLEAERDGDLESKAS-HEQMYNAVIG 527 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 +++ E I ++ +D + I + ++ + + Sbjct: 528 FLDEMMVLTDTETLTLDEMIALLEEALDNVHYSMIPPSLDHVAITTIERAYSQSWPRVYV 587 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAE----KYIGQAAHDFEMANGTR-HLI 698 GLN+GV+P+N + + L L AE K + + HL Sbjct: 588 IGLNQGVFPQNMGDEGLIKDREREALAEAGLVLAEGALPKAFNENFLLYLAMTRAEQHLT 647 Query: 699 YTRSLRENNIPTIASRW-LQRLLVLG----------------GTDFFDNLKKRGQCYLDW 741 + + + + S ++RL LG ++ + + Sbjct: 648 ISYAGSNDEGEGLESSLVIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRPYQSLSLLSER 707 Query: 742 TRKLDYTTKQPHYKR-----------PKPFPPLEAQ------------------------ 766 L +P ++ Sbjct: 708 WGALFSGVPVSPLWWGLYNWARHDGAYRPRLEDVSRGIRDNNDVPVIAPELVTGLFLKRG 767 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL------- 819 + S + +++ P+ YA+ LKL+ + + GT H + L Sbjct: 768 YMSGSVTRLEKYRQCPFKFYAQYGLKLEPRK--VRSFGAPEIGTFLHANLERLGTQLLSE 825 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEK--------ENLPPHIDIIWRHLFHKISHSFLEHE 871 K+ + + L ++ E+ I+ K ++ Sbjct: 826 HKQWRDLDETAQQELCARVAADILEENRYDEDEKTAYDKAIEERVVRTLQKTVSRLVDW- 884 Query: 872 EKIQSSIEKIFVNIPA-------KMAIESIG---IHLTGFADRIDLL-KSGFVD--ITDY 918 +SS + +++ + + + L G DRID + G + DY Sbjct: 885 -SSRSSFDTMYLEQDFGRPNGWDSIKVSLGEDRYLRLVGQIDRIDEYNRDGHTYGMVIDY 943 Query: 919 KTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQI--DCRKVANLFYIRLKQKFKIDCIT 975 K+G + QL AL+ ++ + A + Y +K Sbjct: 944 KSGSTSVNAQEIYYGLKLQLMTYLLALE-SAYKKHHDQPMTPAAVVYTYVKNPRTPAGEP 1002 Query: 976 NDKKKYSA 983 ++ A Sbjct: 1003 VSYEEAKA 1010 >gi|325663488|ref|ZP_08151898.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 4_1_37FAA] gi|325470387|gb|EGC73618.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 4_1_37FAA] Length = 1136 Score = 194 bits (492), Expect = 8e-47, Method: Composition-based stats. Identities = 114/965 (11%), Positives = 259/965 (26%), Gaps = 131/965 (13%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 R + L + L E L + + + +I + E Sbjct: 82 RRIVLDDI----GKSLLLRKAAGDMEGELKVLGGNIRRLGYISEVKSVISEFTQYDVSAE 137 Query: 168 DLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 +L + +W ++ + + E L + + A + Sbjct: 138 ELERVMESGEIGPQLYWK--LHDIQKLQEKFGEYL--QGKYITGEELLDVFSAVVQQSEI 193 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 +++ G TG P R++ + V +D Sbjct: 194 LKDSVVVLDGFTGFTPVQNRVLGQLLKICRKVTVTVTIDQREDPYQLK------------ 241 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + ++L+K + + + + + + Sbjct: 242 ----HKYQLFTLSKQMVTGLVHIAAEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQN 297 Query: 345 LENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399 L + D ++L N +EE++ I + + + +++ A Sbjct: 298 LFRYTKRVYDNKQDMLSLHAVKNPKEESVFIVSEILRLVRTKGYRYRDMAVIVSDMETYA 357 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 ++ G+ + + L SLL I + + + ++ L F Sbjct: 358 EYMERAFRICGVPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTR 417 Query: 460 PEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 E AL + + K + + D + R++E K Sbjct: 418 EEVDDVENYVVALGIRGYKKWKEMWVRQSPHADAEDMLRWNAFRQKFIEKLERITEVLKR 477 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + + LV + + + + +L + + Sbjct: 478 RKKTVREVTEAIYAFLVQEEMQQKIGIYEVQFQERGQLVLA---------------KEYA 522 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + + LF K E + + E+ +++ + V + + +RL Sbjct: 523 QIYRIVLELFDKFTELLGEEQISLGEYRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRL 582 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMAN 692 + L L G+N+ P LS + A++ + Sbjct: 583 QDVKVLFLAGVNDTWLPGKQGAGGLLSEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHL 642 Query: 693 G--TRHLIYTRSL-RENNIPTIASRWLQRL-----------------------LVLGGTD 726 + +L T S + + L Sbjct: 643 TKPSEYLYLTFSKISSEGKSLRPAYLIADLKRMYPELLVEEEEDKPFWEKELTPETALPY 702 Query: 727 FFDNLKKRGQCY--------------LDWTRKLDYTTKQPHYKRP------KPFPPLEAQ 766 + L+ R + + W +++ H KRP + L Sbjct: 703 LVEGLQVRSETFGGAWKELYTWYRKHPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGT 762 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S + +++ YA + LKL+ D G +FH+ + + KK Sbjct: 763 ILENSVTRLEKFSACAYAHFLTYGLKLEER--AVYGFKPVDLGNIFHSAMEQFSKKLEEH 820 Query: 827 ---NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKISHS--FLEHEEK 873 T L +Q+I+ E + ++ + ++ Sbjct: 821 QVTWTTVSEELREQLIEESVEAGVTNYGNAVLYSSSRNEYVITRMKRLLRRTVWALTKQL 880 Query: 874 IQSSIEKIFVNIPAK---------MAI-ESIGIHLTGFADRIDLLKSGFVD---ITDYKT 920 + I +++ E + L G DR+DL + + DYKT Sbjct: 881 EKGDFVPAGYEISFGNLAHLESVNLSLSEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKT 940 Query: 921 G-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITND 977 G + + QL + A+ + ++ A +FY ++K F + + Sbjct: 941 GAKAFQLGEMYHGLQLQLIVYLNAVMEMEEQKHPEKEIVPAGIFYYQMKDPFVEKEVREN 1000 Query: 978 KKKYS 982 + + Sbjct: 1001 LGEKA 1005 >gi|297538866|ref|YP_003674635.1| putative DNA repair protein [Methylotenera sp. 301] gi|297258213|gb|ADI30058.1| putative DNA repair protein [Methylotenera sp. 301] Length = 915 Score = 193 bits (491), Expect = 9e-47, Method: Composition-based stats. Identities = 109/700 (15%), Positives = 205/700 (29%), Gaps = 94/700 (13%) Query: 358 DVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRFGIN---- 412 +V A + E + + L EN K + A+I+ RR +L + Sbjct: 220 EVKHFAAVDANSECRAAVAWAKQKLTENPKAQLAIISPALGSIRRELADLLDDTFHSETL 279 Query: 413 ----------IDISAGIPLSTTLHSSILTSLLNAIFKLND--FMAIATLVKHPLAKFGFP 460 D S G+ L+ LL D F + L++ Sbjct: 280 HSSLYETPRCYDFSLGLALTEYAIVHSALQLLRLAASKADLIFDEVTPLLQDVYWGSQQE 339 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 A+ L+ R SY + L + +++S Sbjct: 340 ----LDARAQLDAHLRRNMSASYHLESLIKQASKLQTNGILLDELLENLTQIS------- 388 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + +S W V L + + R L + F+ + Sbjct: 389 -----------------RFQNQQGKQRQVLSAWVTDFVQLLDELHWAKTRSLSSHEFQTQ 431 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 L L +A + IT L + + + + + ILG LE+ + Sbjct: 432 QAFLKCLKELSSLDAIFGNVSASAAVQKITELCNATMFQSEAKGDIRIQILGLLETPAVQ 491 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEMANGTRHL 697 D + +N+ WP NP L +Q + A + + + + Sbjct: 492 LDAVWALNMNDQHWPPAVKLNPLLPADLQRNRGTPNASAAVQSQFASLVHQRLMTCAPEV 551 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 I++ + +E+ S L+ L L +R L Sbjct: 552 IFSYATKEDERELRPSPLLEIQSDLQTPSTIQTLTER----------LAQPASLQFLDDF 601 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 L + + P + + L + D RG+L H ++ Sbjct: 602 IAPAVLPDENIRGGVNLFAAQAKCPAWAFYQYRLGAAKLETPVDGLDTMSRGSLLHKVLQ 661 Query: 818 ELIKK------RINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISH 865 P +N + I+ + + PP + I R+ H++ Sbjct: 662 LFWLDCETLSNLKALFPPLLNEKIDTAIEKSIQALSDEINYHIPPQVLQIERNRLHQLMQ 721 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP- 924 ++L E + + ++ +E + ++L+ DRID L G + + DYKT Sbjct: 722 AWLTLELER-ADFVVDACEKKFELDVEGLKLNLS--IDRIDKLAEGGLVVIDYKTSAAVS 778 Query: 925 -KKETAQKLIDPQLSLEAAALK------AGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 ++ +PQL + A SF++I + +I L + + Sbjct: 779 NSSWAEDRISEPQLPIYVVLALKYEQVVAVSFAKIRSDETK---FIGLSAERDVLPKVTA 835 Query: 978 KKKY----------SADELSEKSLKNLIEIVTLLQNGEQP 1007 K D L E +L I ++ G Sbjct: 836 LAKVRENSAFYGFGDWDALLEHWYTSLTNIAQEIKAGVAG 875 >gi|331087019|ref|ZP_08336094.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409469|gb|EGG88912.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1136 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 111/964 (11%), Positives = 265/964 (27%), Gaps = 129/964 (13%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 R + L + L E L + S + + +I + E Sbjct: 82 RRIVLDDI----GKSLLLRKAAGDMEGELKVLGSNIRRLGYISEVKSVISEFTQYDVGAE 137 Query: 168 DLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 +L + +W ++ + + E L + + A + Sbjct: 138 ELERVMESGEIGPQLYWK--LHDIQKLQEKFGEYL--QGKYITGEELLDVFSAVVQQSEI 193 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 +++ G TG P R++ + V +D Sbjct: 194 LKDSVVVLDGFTGFTPVQNRVLGQLLKICRKVTVTVTIDQREDPYQLK------------ 241 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + ++L+K + + + + + + + Sbjct: 242 ----HKYQLFTLSKQMVTGLVHIAEEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQN 297 Query: 345 LENKIPNIQKCFSD-VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399 L + D ++L N +EE++ I + + + +++ A Sbjct: 298 LFRYTKRVYDNKQDMLSLHAVKNPKEESVFIVSEILRLVRTKGYRYRDMAVIVSDMETYA 357 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 ++ G+ + + L SLL I + + + ++ L F Sbjct: 358 EYMERAFRICGVPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTR 417 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 E + + +RG K ++ R + + + W + ++ E Sbjct: 418 EEVDDVENY--VVALGIRGYKKWKEMW-------VRQSPHADAEDMLRW-NAFRQKFIEK 467 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 L + + + + + + + + + + + + + Sbjct: 468 LERLTEVLKCRKKTVREVTEAIYAFLVQ----EEMQQKIGIYEVQFQERGQLVLAKEYAQ 523 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + + LF K E + + E+ +++ + V + + +RL Sbjct: 524 IYRIVLELFDKFTELLGEEQISLGEYRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRLQ 583 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG 693 + L L G+N+ P LS + A++ + Sbjct: 584 DVKVLFLAGVNDTWLPGKQGAGGLLSEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHLT 643 Query: 694 --TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR---------------- 734 + +L T S + + L + + + R Sbjct: 644 KPSEYLYLTFSKISSEGKSLRPAYLIADLKRMYPELLVEEEEDRPFWEKELTPETALPYL 703 Query: 735 -----------GQCY----------LDWTRKLDYTTKQPHYKRP------KPFPPLEAQP 767 G + W +++ H KRP + L Sbjct: 704 VEGLQVRSETFGGAWKELYTWYRKHPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGTI 763 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK- 826 S + +++ YA + +KL+ D G +FH+ + + KK Sbjct: 764 LENSVTRLEKFSACAYAHFLTYGMKLEER--TVYGFKPVDLGNIFHSAMEQFSKKLEEHQ 821 Query: 827 --NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKISHS--FLEHEEKI 874 T L +Q+I+ E + ++ + ++ Sbjct: 822 VTWTTVSEELREQLIEESVEAGVTNYGNAVLYSSSRNEYVITRMKRLLRRTVWALTKQLE 881 Query: 875 QSSIEKIFVNIPAK---------MAI-ESIGIHLTGFADRIDLLKSGFVD---ITDYKTG 921 + I +++ E + L G DR+DL + + DYKTG Sbjct: 882 KGDFVPAGYEISFGNLAHLESVNLSLSEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKTG 941 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDK 978 + + QL + A+ + ++ A +FY ++K F + + Sbjct: 942 AKAFQLGEMYHGLQLQLIVYLNAVMEMEEQKHPEKEIVPAGIFYYQMKDPFVEKEVRENL 1001 Query: 979 KKYS 982 + + Sbjct: 1002 GEKA 1005 >gi|256825725|ref|YP_003149685.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689118|gb|ACV06920.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547] Length = 1083 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 116/1026 (11%), Positives = 261/1026 (25%), Gaps = 74/1026 (7%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 + +VE L+ V + PT+ LR E +T +P + S Sbjct: 31 STRVVEEVVAHLEAGGDLSQVLVLTPTRLTATMLRERLEERWPHATTGMP-VHSHQAFGF 89 Query: 87 EKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 L+ P + + + LA L+ +PE+ + Sbjct: 90 AVLGHHARLTDAPAPTLLTGADQDAVLAELLASAAQDDAAADAAGWPEA----VRAALGT 145 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYW---TER 198 + D+ +L + + W A ++ + ++ Sbjct: 146 QGFRDQVRDLFMRAVEHGVTAGELAEFDDRQGPDGTPGLWRAAGRLMREYEQVTALSSQA 205 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 V+ + ++ E G +++ + T LM +A A Sbjct: 206 AVDAAWVVAAAADLLVVDDEVAEDAAGRLQLVLVDDAQELTAGTLALMDALARRTPRARW 265 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + D + + + + P + L + Sbjct: 266 VLAGDPDAAVQGFRGARPGAFLEWARDGVSEVLP--CSHRHGPALRAVAGRIAERIGAHG 323 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + R + + + + A + + E ++ L Sbjct: 324 VEHRRPGPRADGEGSGGPGVAPSEAGDGPGVAGGSVRPEEAAALVFPSVHAELSHVSTVL 383 Query: 379 RMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLL 434 R A++ R +V+ L R G+ + +S G P++ + L L+ Sbjct: 384 RREHVLAGVPWGRMAVVARGRGRTEQVRRALERAGVPVQVSGGGQPVTGQPVVATLLDLV 443 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 A L A + + ++ ++ + + + + Sbjct: 444 VAALDLARLRPGAFAGQGAGSAAVVDQERITGWLTSPVGGLDQTSVRRLRRVLRAEAGAP 503 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 T E + + + + V G D Sbjct: 504 TGVTSGELLEQAVLDPAHPWERRGAETGALRRLATALHAGVAAARRTPDGRGWALGVDAE 563 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--------ANAIEWI 606 + + L + L G+ ++ + + A ++ Sbjct: 564 TVLWAVWDGLGLASGWQRQALAGGVAGRRADRELDAVLGLFAAAEQFVERRPGAGPDVFV 623 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 D + + + +L + ++ + + G+ GVWP + + Sbjct: 624 DWMRSSQVARDSLVLGRQRDAVQVLTPQTAAGHEWEVVSVVGVQAGVWPDLRLRGSLVGS 683 Query: 667 VMQSDL--------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 DL + A + + ++R+ A L Sbjct: 684 SRLVDLVEGRAATVADELASVRHDETRQFLVACTRATRCLLVTAVRDTEESPSALLNLVE 743 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYT-----------TKQPHYKRPKPFPPLEAQP 767 L G + + P R P Sbjct: 744 PLPDGAEERPWAPWEPPLDLRHQVALARRELLAAAGADTGEDSAPGEHRIDPGARAAWAA 803 Query: 768 RTYSFSEIKQLINDPYAVYARRI---LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + + P +A R + + + GT + + Sbjct: 804 ELAALVRSEVPRAHPEQWWALRQVTSARAPWPADTVPSVRPSALGTYQDCALRWFLSTHG 863 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPP---------------HIDIIWRHLFHK--ISHSF 867 P + + ++ + P +W + ++ Sbjct: 864 GSTPPGRSQELGILLHDLLAERPEDPVPALAAEAERRWAELGSPEVWWSRRERERMAEWL 923 Query: 868 LEHEEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPK 925 +E + S + + +P +A+E+ G+ L G DR++ SG + + D KTG Sbjct: 924 RRYEIYRRESGRELVGTELP--LAVEAEGVRLAGRVDRLERHPSSGALHVADLKTGFVGP 981 Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 +PQL A+ AG+F Q ++L +I I + E Sbjct: 982 PSEL--PGNPQLGAYQVAVAAGAFEQ--GTVAGGASLVQLDSGERIGTIDRRQPPLDEGE 1037 Query: 986 LSEKSL 991 + + Sbjct: 1038 VDHRER 1043 >gi|256821958|ref|YP_003145921.1| hypothetical protein Kkor_0733 [Kangiella koreensis DSM 16069] gi|256795497|gb|ACV26153.1| conserved hypothetical protein [Kangiella koreensis DSM 16069] Length = 913 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 103/720 (14%), Positives = 233/720 (32%), Gaps = 93/720 (12%) Query: 360 ALIEADNEREEAISIAIALRM----SLDENKKK---SALITADRN---------LARRVK 403 ++ ++ REE + R +L +N + A++ + L + + Sbjct: 217 QVLSFNSMREEFKTAIHQARDSVIKALKDNPDQPFRCAIVVPELEKHKALIERLLWQELT 276 Query: 404 LELTRFGINI----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 L + DIS G L+ +LL + + + L+ P Sbjct: 277 PSLEPEQQPVVGIYDISLGESLNRQPLVVTALNLLKFLNGSIEAQVLQQLLLSPYF---- 332 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 K L+ DR +K + +S E +L Sbjct: 333 -------------------GKPKASGTGHDQLLSDRARLEKFLRKSHKQRFAIS-ELSDL 372 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 A + + + + L+++DW K + L R L + ++ Sbjct: 373 AQQAKITSSSFADLIESLSSAQQLVKTKLTLADWVKRLTSILDAAEWPGMRTLQSREYQ- 431 Query: 580 EGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +TL F+++ + + ++++++LI + ++ K+ + ++G LE+ Sbjct: 432 VQQTLYDCFNQLRQFQVFYPEVISFSSLLELLSQLIAEKQFHQELPKAP-IQVMGLLETL 490 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANGT- 694 L FD L L G V P NPF+ + + +A++ A F + Sbjct: 491 GLEFDQLWLTGATYQVLPAQPNPNPFIDKQTLKQHQMPGSSAQREYEYAQQLFNSLLASG 550 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + + + + + S ++ ++ +R+ D Sbjct: 551 DDVTVSYPRFDGSSELLPSPFIAEFPEQTIAANARLAPDFINQIVESSRREDSVESY--- 607 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + PL + IN P+ Y LK+ ++ + +RG+L H Sbjct: 608 -QDTHGQPLATGVVKGGTGFFRDQINCPFKAYMSYRLKVKEFEEVEQGLNAMERGSLVHT 666 Query: 815 IITELIKKR------INKNTPEINHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHK 862 ++ K+ +K+ +++ L++ + S ++ + K Sbjct: 667 VLEAFWKEHDSNEILTDKSESQLSSLIEPYLASVLDEYSEQFYYLQLADFADNEFQRLLK 726 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 L+ + K + + IE + +L DRID ++ G + I DYKTG Sbjct: 727 QLVEALQVDAKRLP-FTSLPPEQDQSITIEGLTFNL--KVDRIDEVEDG-LLIIDYKTGT 782 Query: 923 NPKKE-----TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF-------K 970 + + +PQL+L A + +A + + + K Sbjct: 783 PTRAKLYPKNKELAPEEPQLALYAI--------NQGDKPIAGVSFFNINAKEVRYQGVAD 834 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 K+ + E ++ ++ + + + + ++ ++ R+ Sbjct: 835 TIENLALDKRSAIKEPMSDIIERWQLQMSEVARDIKAGTAIVDP--RNCDYCDFASACRI 892 >gi|303326805|ref|ZP_07357247.1| RecB family exonuclease [Desulfovibrio sp. 3_1_syn3] gi|302862793|gb|EFL85725.1| RecB family exonuclease [Desulfovibrio sp. 3_1_syn3] Length = 997 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 137/1082 (12%), Positives = 299/1082 (27%), Gaps = 177/1082 (16%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 PF ++ L + + + S + VP R + L + + +K Sbjct: 26 PWQRPFLPDLKAVLEDCSGGRS-----------GSALLIVPHNRPWRYLLQLYAKE--RK 72 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 +LP + +L D+V+ + + + + R+ L + D Sbjct: 73 PRLLPKVLTLADMVKVWRAGTSDVPLHTA---NMLDRVALLHGCVQNLTE-------DDA 122 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 S + A + LA +++ + + + DL + L Sbjct: 123 ALSARFARMDMALFLPWGLRLAALLEEMLGQGLETADLAY-VENEVAAPAAALLGALGRI 181 Query: 192 SKYWTERLVELNASSPVGYQ---IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + + L E ++P Q L+ G + P+++AG + L+ + Sbjct: 182 GRAYLAALNERRWTTPGLDQYMASRQASHIPPLLVPGAERPVLVAGFSVLSGTEDVLLRS 241 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + GA + D ++ + H A L + + Sbjct: 242 LWRA--GAHICLHTDP------------ALAGNEPAHWACAEH-----AAWLRRWQARAK 282 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + R ++ + Sbjct: 283 PAVEPAALEAAHKPR-----------------------------------LSFFAGYDCH 307 Query: 369 EEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 + ++ L N + +A++ D L V L ++++S G PL+ + Sbjct: 308 SQLQAMRDTLEKDTKTNGRMPSTAVLLTDSALLMPVLHHLP--DKDVNVSMGYPLTRSPL 365 Query: 427 SSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + +L +LL + + ++HP + + Sbjct: 366 NRLLDALLRLQEGRSEDGRYYWRTLLQCLRHPYLNMLR--------------IEDESGRT 411 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + L+ L + + L LL + + L ++ + Sbjct: 412 LFLRDALRRLEALVRTGNRFVDPAALADECRAALPAPLDTLLSQCLAITVEALSAARSTE 471 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + I D+ + + + L + ++ Sbjct: 472 DIAECLHGICDFLLAYGGDMWRHFPLDAEAMFRLMRHAAPILRETCLAQT-------PFP 524 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I ++++ E V + E + L +LG LE+RLL+F+ +++ + P N A++ Sbjct: 525 PAVLHGITRQVLEQERVPFEAEPLTGLQVLGMLETRLLHFERVLIVDATDDKLPGNPAQD 584 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLREN-----NIPTIASRW 715 P L ++ L L A + AAH + + + SR+ Sbjct: 585 PLLPDSLRQVLGLPDARRRERTAAHTLYRLCAGAEEVHFFWQEGITRSALFDGKKSRSRF 644 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----TYS 771 +++L+ L G+ L R ++ P+ A S Sbjct: 645 VEQLIWE-EEQRRGALLTPGEEPLAGARCTVRASQVLPKSLPRGAGLDTALQHLLREPLS 703 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNT 828 + + + P + + +L + D G HN + L + ++ + Sbjct: 704 TTRLDVYLQCPLRFAWQYLCRLAPQREINEGDDPAAVGICIHNTLRALYEPYLHKEVRRG 763 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIP- 886 ++ E +L + + + LE Q + + Sbjct: 764 DISMETVRARFYEALEAADLRRILPADSCLMLETAAPLRLERFLARQPESALILALEEKL 823 Query: 887 -AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------------------D 922 + + TG DR+D G + + DYKTG Sbjct: 824 NVDLDLNGQRYAFTGTLDRLDRR-DGLLYVLDYKTGTIKRHDGSLWTDAPFFERVAQACS 882 Query: 923 NPKKET----------------AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 P + Q+L QL + +KA + + + LK Sbjct: 883 APGIKAQTAMGEDRMSALFEELRQRLPSLQLPCYLSMIKAK-----NMGAPGDAALVELK 937 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + + + +L +V F + + Y Sbjct: 938 EDGAEIPLFGGLAEEDLTAALAYCDLSL-ALVLRHLESAPHFAARPD---RHCAWCPYAG 993 Query: 1027 LA 1028 L Sbjct: 994 LC 995 >gi|254853389|ref|ZP_05242737.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300763921|ref|ZP_07073917.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017] gi|258606757|gb|EEW19365.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300515262|gb|EFK42313.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017] Length = 1157 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 97 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 214 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNSINV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 265 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 312 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N + ++ L+ + L + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ +S+L + +E Sbjct: 492 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 612 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 672 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 732 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|294497407|ref|YP_003561107.1| ATP-dependent nuclease subunit B [Bacillus megaterium QM B1551] gi|294347344|gb|ADE67673.1| ATP-dependent nuclease, subunit B [Bacillus megaterium QM B1551] Length = 1166 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 116/969 (11%), Positives = 246/969 (25%), Gaps = 136/969 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADF 187 + + L L + + + L ++ + L +K + Sbjct: 102 HQKEELRLFANSSEQAGFIEELEKMVKEFKQYTVDAPSLEEMKKKLQAEDEKVLADKLHD 161 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L + ++L+ + L+ + + I + G P ++ Sbjct: 162 LHLIYGELEKQLMTKYVD--GEDYLKLLSEKVASSAYLAQATIYVDGFHHYTPQELTVLV 219 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + D I N + + L L I+ Sbjct: 220 ELMKVCREVKIAVTSDYSYQDFIPNDLHLFRLTSETYQE---------LMGLAAENGIEI 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++ E P Q ++ L+ A + Sbjct: 271 QEPIVFNEQKR------------HQNSPELAYLERYYDERPTPEFQSEPENIQLLPAVSR 318 Query: 368 REEAISIAIALRMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLST 423 R E IA + + + + ALI + + ++ + I I + Sbjct: 319 RAEVEGIAREVLSLVRDRGYRYRDIALIVRNAEDYHDLLQTIFRDYEIPYFIDQKRAMFH 378 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNKNS 482 + S+L + + I VK L + + R + + LE L Sbjct: 379 HPLVEFVRSVLEVVSGSWRYETIFRAVKTDLLFPLSSDVHQLREEMDELENYVLAYGIQG 438 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + + ++ + E+ ++ + + K K Sbjct: 439 SKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ--KLKQGKI 496 Query: 543 STCGNLSISDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 ++ + + L+N C +E + E+ K + LF + +E Sbjct: 497 GKEKAEALYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQFVEMMGE 556 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 K + + D+ +D + + SRL + + G+N+GV P Sbjct: 557 EKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVNDGVIPAK 616 Query: 658 TAKNPFLSRVMQSDL---NLKT----AEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNI 708 + LS + L L +K + + + + L + E Sbjct: 617 PKSDGLLSEKEREQLLESGLLLAPTGRQKLFDEQFLIYLALSSSSEKLYVSYPLANEEGK 676 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + S + R+ L L + + T + Sbjct: 677 TLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYITNPLTSIAHLASQLQGWKRHY 736 Query: 769 TYS----------------------------------------------------FSEIK 776 S S ++ Sbjct: 737 PMSSAWWDVYNFYVENPDWNSYSEKVLSSLFYQNEAKRLTKKTSQRLYGKHIQASVSRME 796 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII----------TELIKKRINK 826 + PYA +A LKL F D G LFH + + K K Sbjct: 797 KFEACPYAHFASHGLKLKERKVF--KLAAPDIGELFHAALKMISDELRGGQKEWKNLTRK 854 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHS--FLEHEEKIQSSIEKIFV 883 + +++ + + E L + H +I + E S + + Sbjct: 855 DCQQLSTAAVHELAPRLQNEILLSSNRHHYLTHKLQQIIERASLVLSEHAKMSGFVPVGL 914 Query: 884 NIPA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETA 929 + + + L G DR+D +S + I DYK+ Sbjct: 915 ELGFGPSAELPSMQFTLPNGHTMELVGRIDRVDKAESSKGLLLRIVDYKSSDKALNLVEV 974 Query: 930 QKLIDPQLSLEAAAL---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + Q+ + A + Y + + + N K D++ Sbjct: 975 YYGLSLQILAYLDIVVTYAEQLLHDNRGALPAGVLYFHV-----HNPMINSTKALQPDQI 1029 Query: 987 SEKSLKNLI 995 + K Sbjct: 1030 EAEIFKKFK 1038 >gi|254931620|ref|ZP_05264979.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] gi|293583173|gb|EFF95205.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] Length = 1157 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 278/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 97 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 214 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 265 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 312 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N + ++ L+ + L + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ +S+L + +E Sbjct: 492 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 612 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 672 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 732 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 RQMAKLTMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|227505537|ref|ZP_03935586.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC 6940] gi|227197834|gb|EEI77882.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC 6940] Length = 1069 Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats. Identities = 117/1038 (11%), Positives = 257/1038 (24%), Gaps = 143/1038 (13%) Query: 46 SVTIYVPTKRAIQEL----RSEFIEITGKKST------------ILPIIKSLGDVVEEKF 89 V T++A Q+L R + I++ I P + + + + Sbjct: 69 KVLGLTFTRKAAQQLEQRIRKQLIKLRDSGIVQPGTAAAEALENIAPKVAT-----YDSY 123 Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 DL+ Y L PV R++ A I + + + L L Sbjct: 124 AGDLVREYGLLMPVEPTARIITDAERYAIAHDVVVNYGGKLSASQSLGHV---------T 174 Query: 150 KNLADIIDIIETEEKKWEDLHALKN-------------EKYGMWWLLAADFLK------- 189 L + ++ +++ + + +FL Sbjct: 175 DTLLKLAQAMDNGLLDPDEIREHARIFTATAYDLEKTSKNGPEFAKEVQNFLNKQQLRVE 234 Query: 190 --IASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPAT 242 + E + H +++ + A Sbjct: 235 YLPLVEALKEEQAARGVITFGEQMAIAAALAESHPQVGEQQSQRFNVVMLDEYQDTSHAQ 294 Query: 243 ARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 L+ ++ G V D W T ++ + + +L Sbjct: 295 RVLLRSLFGGVRPGVSVTAVGDPMQSIYGWRGATAENLAAFVEDFPQADGSPAPKDQLTI 354 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 +++ ++ ++ ++ P +V L Sbjct: 355 SWR---------------NPQQTLTLANDVAGHLFAETGGPRPVDELSPRDNAPEGEVKL 399 Query: 362 IEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRVKLELTRFGINIDISA 417 +E EE +A L+ LD ++ +A++ + + L G+ +I Sbjct: 400 AYFASENEEREFVANHLKSQLDACEEPSRFSAAVLVRTNKQSPLISQALDAVGVPNEIVG 459 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L L ++ + + D A ++ P+ G + A+ A Sbjct: 460 LGGLLWQPEIQDLIAVATILLRPQDTNAALRVLTGPMCGLGVKDLKELLARQRNLAGASD 519 Query: 478 --GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + ++ D + ++A + D L + L Sbjct: 520 ESAGRLRWEGGDPVEHLAAQLAELTKEDTSQVLGLADALADLGERERYSAAGLARMEELS 579 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + S+SD + R + G T F+ I+ Sbjct: 580 AKLRHLRTYSLSKSLSDL------FADIEAMFNIRTEVLANGQLGGTTHLDTFADIVAGF 633 Query: 596 SCIKA-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 ++++ + DG T + I+ +S+ L + + + + + Sbjct: 634 HGDSLGALLDYLSMAREHEDGLTPGEVPAVDGRVQIMTVHKSKGLEWKHVCVLHADSSSY 693 Query: 655 PKNTAKNPFLSR----------------------VMQSDLNLKTAEKYIGQAAHDFEMAN 692 L + +AA F +A Sbjct: 694 KAQAETFLTLVEKAPTDADVIELEPDAVKRSAFGKACEAYKESVRQNQREEAARLFYVAM 753 Query: 693 GTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 T + + +L+ L + L Sbjct: 754 TRTESTLTVTGSGTNRKGGKAQKGPYEYLELLREKHSDLVSHWDVPATPEEAEALTTLRE 813 Query: 748 TTKQPHYKRPKPFP--------------PLEAQPRTYSFSEIKQLINDPYAVYARRIL-- 791 T P + E LI + A+ A + Sbjct: 814 GTFPSLRANPDALRGADLVLDAMEELPTLRAGETFELWEQEAGALIEEYAALKAPVVDVE 873 Query: 792 ---KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 +L D + + T L ++ EN Sbjct: 874 LPTELTASDMVSLSSDPIQFARRQRRPVPFKPNAYAKRGTAFHAWLEERFGSPALLSENE 933 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 P D + +FL + +V P ++ + + G D + Sbjct: 934 LPGSDEQPEQDLESLKDAFLNSPWAQR---TPEYVEAPFEITVGES--VVRGRMDAVFRE 988 Query: 909 KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 G I D+KTG P + + QL++ A A + + + + ++ Sbjct: 989 ADGTWLIVDWKTGRPPAGAAMRAA-EIQLAVYAEAWRR-----VHKAENVRAAFFYVRDG 1042 Query: 969 FKIDCITNDKKKYSADEL 986 + + K + L Sbjct: 1043 YFFEPRNLPTGKELVELL 1060 >gi|167748813|ref|ZP_02420940.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662] gi|167651783|gb|EDR95912.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662] Length = 1117 Score = 193 bits (489), Expect = 2e-46, Method: Composition-based stats. Identities = 92/917 (10%), Positives = 235/917 (25%), Gaps = 120/917 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNAS 205 + + E L + L + + + + + + + Sbjct: 117 GFIDEMKSFFAETYQYDVSLEKLKEAVKSFENTDSLTLKMKDIVLVLEKFEDYMKDRYLV 176 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + ++ + K I I G TG P +++ + + + +D Sbjct: 177 --SEQLLDVLAQKITESEKLKGATIYIDGFTGFTPIQNKVLKKLLPYAKKIVAAFTIDEK 234 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + L ++ + L + Sbjct: 235 RAGGPYRDYELFAMPKKEI---------SQLKEMAVRQGVPILPDVILHPNAAGSKELRH 285 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + F P + D+ + N +EE+ I + + + Sbjct: 286 LEQNLFRYPFHV--------------YRGKTKDIRVCCLKNPKEESRYILGCIEHLVRKE 331 Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 K ++T D + FGI I L + S L I Sbjct: 332 GYRYKDLVVLTGDMETYQPELEKCFEDFGIPCFIDGNRALRNNPCVETILSALKMIQMDF 391 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + + +K + E L + N + + Q Sbjct: 392 SYEMVFRYLKSGFSALEPEETDLLENFVIASGIRGYARWNRPFKSRAFTKEEMKQINQSR 451 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 T + E ++ + +++ + +T L + Sbjct: 452 ETFM-KETGPFKEGIRKRGITVLERLTHLHGFFLTLDIQGQMERKKEEFEAAGDLAMA-- 508 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 +++ + ++ ++ E + + E+ ++ + TV Sbjct: 509 -------------KTYDQIYGEVLNIMDQMAEILGEEELSFDEFCAVLETGLSEMTVGVI 555 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLK 675 + + +R+ L G+NEGV PK + ++ + +L Sbjct: 556 PPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTDSQREELLKAGISLAP 615 Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 A + +A L T + +++ + S + R+ L D Sbjct: 616 GAANQAYMEQYYLYLAMSKPDEKLYLTYASMDSSGESKAPSYLIGRIEKLFPGLKKDLDL 675 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770 + Y + + K KP + A Sbjct: 676 QETPVYSVSEARERFVEKLQELGEEKPDQEMAALYEVLNERKLVSPYLDAYFYSNEEKNL 735 Query: 771 ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 S + +++ +A + + L+L + D G +FH Sbjct: 736 DRHLTTLLYGKELENSVTRVEKFSGCAFAHFLQYGLRLRER--LVHEILPMDMGQVFHRT 793 Query: 816 ITELIKKRINKNTPEIN--HLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHS- 866 + + ++ + + +++ +++ + + +++ Sbjct: 794 LQFVGQEGSWDWEDDRERDRFVDSMVERALDEDPDKKEIFESSSRNQYTKERIRRMAKRA 853 Query: 867 -FLEHEEKIQSSIEKIFVNIPAKMAI----------ESIGIHLTGFADRIDLLKSGF--- 912 + ++ + + + + TG DR+D + Sbjct: 854 VWAVEQQIKRGEFTPYEYELGFSADDGLSCANLSLKDGTKMKFTGVIDRVDCYEDEENLY 913 Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKF 969 + I DYK+G+ + QL + A+ + ++ A +FY + Sbjct: 914 LKIIDYKSGNMQFDFTKILNGLQVQLVVYMNAILELEGKKYPEKRMVPAGMFYFHVDDPV 973 Query: 970 KIDCITNDKKKYSADEL 986 + + L Sbjct: 974 IAPKTDGEPEIEVLKNL 990 >gi|254825169|ref|ZP_05230170.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] gi|255519746|ref|ZP_05386983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes FSL J1-175] gi|293594412|gb|EFG02173.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] Length = 1157 Score = 193 bits (489), Expect = 2e-46, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 279/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 97 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 214 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNGINV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 265 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 312 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N + ++ L+ + L + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 492 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGKET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 612 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 672 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 732 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|78043948|ref|YP_361000.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901] gi|123575607|sp|Q3AA34|ADDB_CARHZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|77996063|gb|ABB14962.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901] Length = 1090 Score = 193 bits (489), Expect = 2e-46, Method: Composition-based stats. Identities = 119/939 (12%), Positives = 238/939 (25%), Gaps = 170/939 (18%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L + A+ ++L + K E+L +E W+L LK + Sbjct: 105 LQILQKAADNPGFIEDLLKLFKEFRRYRVKPENLEKASSE--IENWMLQQK-LKDVYLLY 161 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 L + + A + I G P ++ T+ Sbjct: 162 KLYLEKFGEEYTSEGLLEKFLEYAPKSKFLAGAKVFIDGFYTFTPLELEVIKTLLKTCAE 221 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 V + + I +Y ++LL Sbjct: 222 VTVTLPTEYDPGIFNRLYSEALNLGIKVKELKLEKIERYRASELL--------------- 266 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-FSDVALIEADNEREEAISI 374 +P+ +++LI A N EE Sbjct: 267 ------------------------HLAQNYYPLLPDPYSGSLENLSLIAAANPLEEMEKA 302 Query: 375 AIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A +R LI D +K +G+ + + G+ +L Sbjct: 303 ARIIRYLAKFKGYKLSDILVLIPEDGYYISNIKTVFNEYGLPVYVDKGLAFDHHGLYFLL 362 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + + A +K L E + Sbjct: 363 KG----VLGEFNREAAINCLKSGLLNLTADEVFALENY---------------------- 396 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 +L R + W+ S + + ++++ Sbjct: 397 -LLSRGLDGEKLVLKEAWEDPNSS--------YWESWEKGFGEIISFSQILPLINTYREF 447 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 S K + + + R++ + E + ++L ++I E + N + + + Sbjct: 448 SQSLKQLL-----LKIGVPRRISDENGERFWQAFTNLLTEIEEVFGAERLNPTTFAEELL 502 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + ++K + + G+ +I+ G EG +P A + ++ Sbjct: 503 AYLAKLSLKTIPKGLDQVRAGGSKRYWTGEARAVIILGAVEGKFPSPPAAGLIFTEEERA 562 Query: 671 -------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRL--- 719 +L+ ++ H F R + + + L Sbjct: 563 KLKKVGLELSPLIRQRLKEDNFHVFLALTRARERVYVSYPRVSLTGESFTPALLVDWLKK 622 Query: 720 --LVLGGTDFFDNLKKRGQCYLDWTRK-----------------------LDYTTKQPHY 754 L + + Q + L Sbjct: 623 AFPNLKSEEGSYGNETTPQALTRLLSREMVKVKKNGELPFIAQGAFNALLLSKPELITKI 682 Query: 755 KRPKPFPP----------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 R P +T S S ++ + P + + ++K + F P+ Sbjct: 683 ARAFATNPGKIKLNAGFKEFLPSKTLSVSRLETYYSCPLKYFLKYLIKAEEREIF--TPE 740 Query: 805 RTDRGTLFHNIITELIKKRINKN------TPEINHLM---------KQIIDSHFEKENLP 849 T+ G L H + E+IK K E + ++ + Sbjct: 741 ATEIGALLHGAVAEIIKTVREKGQKLSTLLAEDLKTLVYQAFTKAQQEYGEKFLATYRGR 800 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---------MAIESIGIHLTG 900 ++ ++ LF I + E + I + L G Sbjct: 801 YFLNRLYLMLFKAI-EALAYFEG--FTKFTPFGEEIAFGEKERLKSPVFEVNGEKYTLAG 857 Query: 901 FADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID+ ++ + I DYKTG + I+ QL + Sbjct: 858 KIDRIDVYENNGKTYLRIIDYKTGSISISLDEVVGGINLQLLTYLLVASENKELFGENLV 917 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A FY R F+ + + S +EL E+ KN Sbjct: 918 PAGAFYFR----FQNPMLDEKAEGLSMEELKEEVYKNFR 952 >gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae] Length = 1076 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 113/1037 (10%), Positives = 262/1037 (25%), Gaps = 141/1037 (13%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGD 83 + +V ++P V T++A Q+L + + + I L + G Sbjct: 46 MAARVVWLVASGLVDPD---RVLGLTFTRKAAQQLSKRIRDRLEQLAGIDNLRDLDPTGA 102 Query: 84 VV------------EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + + + L+ Y L PV RL+ L I + + L Sbjct: 103 LATKLEAIAPTVSTYDSYAGRLISEYGLLLPVEPSSRLISQTELFQIAHSIVSAHTGALN 162 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG------------- 178 + + S L ++ ++ D+ Sbjct: 163 TSNSPNTVTST---------LISLVSEMDNHMVSPTDIEEESAAFLAMIEDVEATSKRAP 213 Query: 179 -------MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGT 226 + + L + L + + + R AE + Sbjct: 214 SKEVYKWRDTQVLRNELLPLVQQLKTHLADNHLMTFGEQMSLAARLAAENPQVGASQRNR 273 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I++ + A L+ ++ G V D W T + ++ Sbjct: 274 YQIIMLDEYQDTGHAQRVLLKSLFA---GTAVTAVGDPMQSIYGWRGATAANLERFLTDF 330 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 + P K L + ++ ++ Sbjct: 331 GSNGSP---------------ATKKELTVSFRNPPEVLDLANRVSRELLGVPEDPRRPVQ 375 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----SALITADRNLARRV 402 P V L + EE +A L + +++ +A++ R + + Sbjct: 376 PLEPGPAALNGIVRLGFFPSMDEERSYVADHLAQAYEQHDGDHPFTAAVLVRKRKHSAAI 435 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 LEL + G+ ++I L + L ++ + + D A ++ P G + Sbjct: 436 ALELQQRGVPVEIVGLAGLLGIPEVADLVAIATLLVRPYDTQAAMRILAGPSVGLGMADL 495 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV- 521 + R L+ L T ++ + + E Sbjct: 496 MALSDRAYNLSGRDRRATTELSRDPLERLKQIIADTTPSDQDSIVGLAEAVADLDERLDS 555 Query: 522 ----LLVDHILQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPN 574 + + L + + S+ D + V E + Sbjct: 556 SDGPRYSAKGSERLRTLAARLRYLRTNSLSNSLPDLFADIERVFGIRTEVLQREDPRSDG 615 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + + ++++ + +G + + IL Sbjct: 616 ATGTAHLDRFAEVVQDFSRIPGANLSLLLDYLSLAESEENGLEPGEVQVTADRVQILTVH 675 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----------------NLKTAE 678 +++ L + + + + + + + + S L + T + Sbjct: 676 KAKGLEWQHVAVLHADANTYVAKASTWLTNASAVPSALRGDAKGDEDLVGAPVFEIDTPD 735 Query: 679 KYIGQ-------------------AAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQ 717 A + + + + P + +L Sbjct: 736 TAAELAKAGKAHIADFKQVAAEENARLFYVAITRAEQQVLVTASADPSKKRPVLPYEYLT 795 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKRPKPFPPLEAQ 766 L D + +RG+ P + +P + Sbjct: 796 MLRNDF-PDSVEEWHERGEAEDYVPPAPQEAVFPPNYIVVGAEDVFAAMQKQPDLISDDD 854 Query: 767 PRTYSFSEIKQLINDPYAVYARRIL-----KLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 E+ LI + + A + +L + + + Sbjct: 855 LFERWEKEVSALIEEHEQLSAPVVAVNIGVELTATDIVNLAKNPENFAQRRRRPVPFKPN 914 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHI-DIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + T L + E P I + + ++ +FL+ E + Sbjct: 915 SYAKRGTAFHEWLENRFGAEALLDETELPGIGEELDDSDLDRLKEAFLDSEWADR---TP 971 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 V P +++I + G D + G + D+KTG P ++ + QL++ Sbjct: 972 EHVEHPFEVSI--GRHIVRGRMDAVFKNSDGRWIVVDWKTGQPPTDNHEKESVAMQLAVY 1029 Query: 941 AAALKAGSFSQIDCRKV 957 A +D Sbjct: 1030 RLAWARLQGIDVDRVDA 1046 >gi|332653420|ref|ZP_08419165.1| putative ATP-dependent nuclease [Ruminococcaceae bacterium D16] gi|332518566|gb|EGJ48169.1| putative ATP-dependent nuclease [Ruminococcaceae bacterium D16] Length = 1117 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 123/996 (12%), Positives = 262/996 (26%), Gaps = 149/996 (14%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 L P + + RLL + + + +L ++ P Sbjct: 62 SFSRLANRVFLAAGGVGEPELDSGGRLLLMYQAVKAVSQEL-------------TVYARP 108 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + +NL +D +++ + + L E G L + + + L Sbjct: 109 SRRPAFLENLLATVDELKSCCVQPQLLLQAGEEVEGPE-GDKLRDLGLICGAY-QALTAR 166 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 A P + L R + + + G T P +++ + + V Sbjct: 167 TALDP---RDRLTRTAEKLSTCPWAEDMDLWLDGFTDFTPQQGEVLAQLMAQAHQITVTL 223 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D I P A +L L +R + +S+ Sbjct: 224 TCDHLEEDEGGTGIF---------------SPARRTAAMLLRLAKERGISCEVETLSSNC 268 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + ++K S C V L A R E A +R Sbjct: 269 SSKVSALNKVEQELFGSQ-----------GEPVPCEGAVELHRALTPRSEVEWAASRIRT 317 Query: 381 SLDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + E + + D + + R+ + + SA + +++T+ L Sbjct: 318 LVREEGLRYRDIEVTARDFGTYQPLIESVFPRYQVPVFASAMTDILEKPILTLVTAALET 377 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + + +K L ++ L + + Sbjct: 378 VAGGYRYDDVFRYLKTGLTDLPEEDRDLLENYVLKWNLRGSRWTQTKPWT---------- 427 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS----- 551 H + + EEDK L L Q PL + N N T +I+ Sbjct: 428 ------MHPRGYGFPMMEEDKVLLERLDRARRQVAEPLELLRKNTNKTGEGQAIALYSFL 481 Query: 552 ---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + + + E L + + + + + + E+ + Sbjct: 482 ENIGLPERLEERVAALRQREQPALAE-EYRQLWEIVCGGLEQCAQLLGETPMELEEFAAL 540 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 ++ V + T + L L G ++ P+ + LS Sbjct: 541 FRLVLSQYDVGTIPVSLDRVTAGETTRQTGQHGKVLFLLGADDASIPQVSTPAGLLSDDD 600 Query: 669 QS-----DLNLKTAEKYIGQAAHDFEMANGTR---HLIYTRSLRENNIPTIASRWLQR-- 718 +S L L + + R LI + + +L Sbjct: 601 RSLLASYGLELNQTARDLLYREMTTVYLTCARPTQKLIVSWPGQSGAGEERRPCFLVERL 660 Query: 719 ---------------------------LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 L G + + Y +LD + Sbjct: 661 RLLFSDLTVEREEDLYGRFRLQAPLPALEQAGRSQSAHDALLALPEYAPLVERLDRAARW 720 Query: 752 PHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + +P S S + + + ++ + R L+ + + GT Sbjct: 721 ERGRLSRPAVERLYGHRVPMSASRMDKYKSCHFSYFMRYGLQAEPRKP--AGFTAPEYGT 778 Query: 811 LFHNIITELIK------------------KRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 H ++ ++K +R ++ +KQ + Sbjct: 779 FVHYVLEHVLKDDAFQQTTLPGWEDEQDQERRDRVAELTRQAVKQYVREELGGLEQQSER 838 Query: 853 DIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPA---------KMAIESIGIHLTGF 901 + + +++ + S I + ++ + + + +TGF Sbjct: 839 FQYLFRRLLRSVQAVVDNVTQEIWASKFRPISFELGFGSGKDLPPVELTVGDVTLSITGF 898 Query: 902 ADRID-LLKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 DR+D K G + + DYKTG + Q+ L L+ + + V Sbjct: 899 VDRVDGWEKDGRLYLRVVDYKTGRKSFDLTEVWNGLGLQMLLYLFTLEDRG-EKFYGKPV 957 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 + L + I + + + +K L Sbjct: 958 KGAGVLYLPARDAIIKGSRSMSDDAWRKQLDKELTR 993 >gi|307267169|ref|ZP_07548677.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii Rt8.B1] gi|306917820|gb|EFN48086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii Rt8.B1] Length = 1153 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 126/952 (13%), Positives = 263/952 (27%), Gaps = 150/952 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K ++++I ++ E E L + + + + + E L N Sbjct: 117 GFIKKVSEVITELKRFEVTPEKLLEITETIDNLGLREKLKDISLIYSKFEESL-HQNYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L E+ + I G TG P R++ + + V +D Sbjct: 176 QEDELTLLAEKL-EYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNVTLCMDTSH 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + +T T + + + +I E L E + S Sbjct: 235 NSYEIDTTDLFYTTKKTEDKLLE---------ICQRNNISYEKPVYLNGEIPERFRESEE 285 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 +S + + D+++ +A N E A + + + Sbjct: 286 LSFIEKHLFSYPYKVYLKE----------TEDISIFKAVNVYSEVEETARDIIRLVRDEG 335 Query: 387 ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + T D + +K +++GI I I + +TSL + K Sbjct: 336 FRYSDIVVATRDLNRYHKLIKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K + L + K L R Sbjct: 396 YESVFRYLKTGFTDLEKEDINLIENYVLANGIKGDKWKEEVWNYRLN----YRFDRLSIE 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCI------TPLVTYKTNKNSTCGNLSISDWTKL 556 R++E +++A L D + T I + Sbjct: 452 EDEKEIIERVNEIKRKIATSLQDFYKKFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEK 511 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 E + + + + +++E K ++ I++ D Sbjct: 512 FKE--------EKEYDTANQYAQVWDIVVDVLDQLVEVMGEEKVTVEQFAKILSIGFDEY 563 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670 + + + + N L + G+N+G++P + L+ + Sbjct: 564 QIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPAALFEEGILTDGDREILASHN 623 Query: 671 -DLNLKTAEKYIGQAAHDFEMANG-------------------TRHLIYTR--------- 701 +L+ T K + + +I +R Sbjct: 624 VELDRDTKTKIFEEQFLVYTALTSTSKFLRISYPIADHEGKSLRPSIIISRLKKIFPKIK 683 Query: 702 ----------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDN 730 + N + S WL ++ + Sbjct: 684 QFSNVVEMDTAEENLNRVSTPSPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKP 743 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 R L +T +++ L +S S +++ P+A + + Sbjct: 744 KLTRALEGLYYTNQVEKVPAHK-------VKKLYGDEMYFSVSRLEKYAACPFAYFVQYG 796 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSHF 843 LK F +P D GT HN++ K + + + I+D Sbjct: 797 LKAKERKIFSFEPP--DLGTFMHNVLDRFSKALEEEGLTWQDIDREWCDEAVAIIVDDMI 854 Query: 844 EK---ENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MA 890 +K L + ++ + ++ E +SS + + + Sbjct: 855 QKIPGYILNSSPRYKYLAERLKRVLSNAVWVVSEHIKRSSFVPLDHEVAFGDNQKYPPIK 914 Query: 891 I---ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 I I+L G DR+D+ ++ I DYK+G ++ QL + A Sbjct: 915 IVLSNGEEINLIGRIDRVDIFEKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDA 974 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + + A +FY ++ D I K S +EL + K L Sbjct: 975 ILESAINGNTNLNPAGIFYFKID-----DPIIKADKDISDEELQMQIFKKLR 1021 >gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Mycobacterium marinum M] gi|183174707|gb|ACC39817.1| ATP-dependent DNA helicase [Mycobacterium marinum M] Length = 1057 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 119/1059 (11%), Positives = 266/1059 (25%), Gaps = 126/1059 (11%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPII 78 + LV+ SV + + R RS G+ + P++ Sbjct: 32 SALLVQAAIAHIAAGADPESVLLLTGSGRMGMWARSSLTTALLRSHTTGTGRAAVREPLV 91 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPL 136 +S+ + + P RLL A I R L ++D + Sbjct: 92 RSVHSYAYAVLRRAAERTGDAPP------RLLTSAEQDAIIRELLAGDLEDGPSARSAWP 145 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + A L +++ +L L W A F + + Sbjct: 146 RHLLPALTTAGFATELRNLLARCAERGVDPMELERLGRRSGRPEWAAAGRFARQYEQ--- 202 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 V A + G + GS A+ + Sbjct: 203 -----------VMLLRAAVGTATPQATAPALGAAELVGSALEAFASDPELLAAERARLRF 251 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 +++ P A + + + + Sbjct: 252 LLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLLGGPLDGGPAVT 311 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + ++++ + + V L + AI+ A+ Sbjct: 312 LTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVRLAATAHAEAAAIADAL 371 Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSL 433 +D + + ++ + +A R+ L G+ + G L+ L ++ Sbjct: 372 RRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTV 431 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L A + + L+ P+ + R + ++ D DL Sbjct: 432 LAATAEGLNADQALALITGPIGRVDPVTLRQLRRTLRRAV----AGRSPEDFGDL----- 482 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 +AT + + ++ L ++ ++ + Sbjct: 483 -LVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHR 541 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L L + + E L + + + S + ++ + L Sbjct: 542 SGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSG--LLEHVAALQ 599 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-- 671 + + ++ + +L + +D +++ GL +G+WP + L+ D Sbjct: 600 LPRVSEEPVAQNEQVRVLSAHAALGHEWDLVVIAGLQDGLWPNTIPRGGVLATQRLLDEL 659 Query: 672 ------LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI----ASRWLQRLLV 721 + + + M R L+ T + + S + + Sbjct: 660 DGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQ 719 Query: 722 LGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------------- 763 D L + Sbjct: 720 WANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGV 779 Query: 764 ----------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 T + S ++ L + P A R + Sbjct: 780 AGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLR-- 837 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G++ H +I E + ++ + + + E Sbjct: 838 ----ATIGSVLHALIAE-----PGASEEQLLAELAR-VWKLLPFEADW--FSSNELARHR 885 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFVDIT 916 + +F+E + +S + ++ V I ++ I L G DR++ +G + I Sbjct: 886 AMIQAFVEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIV 945 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 D KT P + + QL++ A+ G A L Y Sbjct: 946 DIKTAKTPVSKDDAQQNA-QLAMYQLAVAEGMVEAGAEPGGARLVY-------PGKSAAA 997 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 + D L+ + +V FI+ Sbjct: 998 GAAQRDQDPLTPAARDQWRNLVRQAAEAAAGPHFIARRN 1036 >gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] gi|118570113|gb|ABL04864.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] Length = 1057 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 119/1059 (11%), Positives = 265/1059 (25%), Gaps = 126/1059 (11%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--------GKKSTILPII 78 + LV+ SV + + R RS G+ + P++ Sbjct: 32 SALLVQAAIAHIAAGADPESVLLLTGSGRMGMRARSSLTTALLRSHTTGTGRAAVREPLV 91 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL--YPESPL 136 +S+ + + P RLL A I R L ++D + Sbjct: 92 RSVHSYAYAVLRRAAERTGDAPP------RLLTSAEQDAIIRELLAGDLEDGPSAGSAWP 145 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + A L +++ +L L W A F + + Sbjct: 146 RHLLPALTTAGFATELRNLLARCAERGVDPMELERLGRRSGRPEWAAAGRFARQYEQ--- 202 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 V A + G + GS A+ + Sbjct: 203 -----------VMLLRAAVGTATPQATAPALGVAELVGSALEAFASDPELLAAERARLRF 251 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 +++ P A + + + + Sbjct: 252 LLVDDAQQLDPQAARLVEVLAAGAEFALIAGDPNQAVFGFRGGEPAGLLGGPLDGGPAVT 311 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + ++++ + + V L + AI+ A+ Sbjct: 312 LTMSHRCAPAVARAVSGIARRLPGGSAGRHIDGTGTEDGSVTVRLAATAHAEAAAIADAL 371 Query: 377 ALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSL 433 +D + + ++ + +A R+ L G+ + G L+ L ++ Sbjct: 372 RRAHLVDGVPWSQMAVIVRSVPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTV 431 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L A + + L+ P+ + R + ++ D DL Sbjct: 432 LAATAEGLNADQALALITGPIGRVDPVRLRQLRRTLRRAV----AGRSPEDFGDL----- 482 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 +AT + + ++ L ++ ++ + Sbjct: 483 -LVATLSEDGRPAVGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHR 541 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L L + + E L + + + S + ++ + L Sbjct: 542 SGLQNRWLAAIDRGGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSG--LLEHVAALQ 599 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-- 671 + + ++ + +L + +D +++ GL +G WP + L+ D Sbjct: 600 LPRVSEEPVAQNEQVGVLSAHAALGHEWDLVVIAGLQDGSWPNTIPRGGVLATQRLLDEL 659 Query: 672 ------LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI----ASRWLQRLLV 721 + + + M R L+ T + + S + + Sbjct: 660 DGVSGNASARAPLLAEERRLLLAAMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQ 719 Query: 722 LGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------------- 763 D L + Sbjct: 720 WANGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGV 779 Query: 764 ----------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 T + S ++ L + P A R + Sbjct: 780 AGADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLR-- 837 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G++ H +I E + ++ + + + E Sbjct: 838 ----ATIGSVLHALIAE-----PGASEEQLLAELAR-VWKLLPFEADW--FSSNELARHR 885 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAI-----ESIGIHLTGFADRIDLLKSGFVDIT 916 + +F+E + +S + ++ V I + + I L G DR++ +G + I Sbjct: 886 AMIQAFVEWRGQTRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIL 945 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 D KT P + + QL++ A+ G A L Y Sbjct: 946 DIKTAKTPVSKDDAQQNA-QLAMYQLAVAEGMVEAGAEPGGARLVY-------PGKSAAA 997 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 + D L+ + +V FI+ Sbjct: 998 GAAQRDQDPLTPAARDQWRNLVRQAAEAAAGPHFIARRN 1036 >gi|253996792|ref|YP_003048856.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylotenera mobilis JLW8] gi|253983471|gb|ACT48329.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylotenera mobilis JLW8] Length = 897 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 99/769 (12%), Positives = 224/769 (29%), Gaps = 68/769 (8%) Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + + + S Q + I + + + Sbjct: 131 LWQQAFQARCGELNALESVRYLDWQLSQLANVGSGLPCRIAFAGFDQTAPQEKRLREILI 190 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 T+ + + A + ++ + L E Sbjct: 191 ARGVQVEDYVTTANEPAQAQHVCLEHDDAECRAAVAWAAQYLAAQPDAVIAIVTPRLGEV 250 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFM 444 + + A + D V+ L + S G PL+ LL + + Sbjct: 251 RSQLADLLDDVLYPESVRPSLAALPRRYNFSLGTPLAQQPVVQAALHLLRLVTAYQLAYA 310 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ P E +A L + D + Sbjct: 311 DVSAMLLSPFWSASQQEADARALLDARMREKLPAQFTLASFIAFAQKQHDEGLNLQQLLQ 370 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + A + W ++ T L+++ Sbjct: 371 DLNAVVAAVPSKLAHA------------------------------AQWGEVLDTLLEHM 400 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 R + +L ++ +L + +A + + + ++ + +P+ E+ Sbjct: 401 RWPGERTISSLEYQAINAWQKALQQLAQLDVLGRRISANQAVAYLQQICTNQVFQPETEQ 460 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + ILG +E D + +N+ +WP NP L +Q L A+ I Sbjct: 461 TPAIQILGIMEGLSAPVDAIWCMHMNDHIWPPPARPNPLLPAFIQRTAGLPNADDSIQAT 520 Query: 685 AH---DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + + + ++ S AS + + L Sbjct: 521 FAATIHHRLLHSAQQITFSSSRTSGESQLRASPLMHDIPTLDTDIPLAET---------L 571 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHF 799 +L + + P+ + S +K P + + L + Sbjct: 572 AEQLSASAHETLMHMDDHMAPIVEEGDHVSGGTGLLKAQAICPAWAFYQYRLGAKALKTP 631 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-----LMKQIIDSHFEK-----ENLP 849 D RG+L H+++ KR + +++ +KQ + E + Sbjct: 632 TSGLDNMMRGSLVHDVLERFWNKRHFADLRDMSADDFILALKQAVSLTLEDFATETDVAS 691 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 P I + + +L+ E++ + + I + + I I + L DR+ L+ Sbjct: 692 PAILELEHERLFNLVGDWLQFEKERGVAFKMIGCEVSKLVQICGIEVTL--KIDRVHELE 749 Query: 910 SGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAG--SFSQI--DCRKVANLFYI 963 +G ++ DYKTG PK + ++ +PQL + A+ + + I KVA+ + Sbjct: 750 NGGLEFIDYKTGQTPKTKNWGEDRITEPQLPIYASFYAENTQAVTGIYFGMVKVADHAFS 809 Query: 964 RLKQ-----KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + + + + L + ++ +I L+ GE Sbjct: 810 GVGEVNFETEQAKRKPAFTQNFVDWPHLLQHWKASIEDIALELKAGEAA 858 >gi|315283381|ref|ZP_07871589.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120] gi|313612971|gb|EFR86905.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120] Length = 1157 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 118/960 (12%), Positives = 275/960 (28%), Gaps = 136/960 (14%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 97 AALDQKDELKIFSKATSRKGFYSELANLFKEMKQEEVSIEDMVN-SASNLSTSVNSKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + + L + + ++ + + + I+I G T ++ Sbjct: 156 ISLIYQKYEQLLADKFLENEDYLRLLAEKIVESDYLN--QTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S++ Y+L L I+ Sbjct: 214 ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTDAY------YALLDLAKLSGIQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E K ++ ++ + S++ + +A+N Sbjct: 265 EQDKFFLANKRAKTDSLEFLANAWGHNKFMAFKGE-------------PSNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I I ++ Sbjct: 312 RAEIEGIAREIRQLTLSGYRYRDMAILTRNLGDYDILCETVMESYDIPIFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSY 483 + S L+AI + I VK L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITENSSALRRKSDILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + + R + +P + + + + + PL T + N Sbjct: 432 WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHTQSI-----INEMRNMILAPLSTLENNLRK 486 Query: 544 TCGNLSISDWT----------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + + Q ++ E+ ++S+L + +E Sbjct: 487 ANTGMEFALALYHYLEQVKAVERLESWRQR-AEEQGYLELAREHEQAWSSISALLDEFVE 545 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + I + +II +D + + ++LL+ + G+N+GV Sbjct: 546 VLGKETLDLISFTEIIATGLDALEFSLLPPSLDQVVLADMENAKLLDMKVIFAIGMNDGV 605 Query: 654 WPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE 705 P LS + L +A+ IG+ + L + + Sbjct: 606 MPLRQKDKGILSDQDRDALRAEDSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAAD 665 Query: 706 NNI-----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--- 745 S +L +L + + ++ + T +L Sbjct: 666 EEGKVLSESNYLRKIKGQFKELNESVYLTDPSLLSDEEQSNYIRSKQATLGLLTSQLQMY 725 Query: 746 ------------------DYTTKQPHYKRPKPFPPLEAQPRTY---------------SF 772 + + K+ E + + S Sbjct: 726 KRGYPLSNVWWDAYNSYFEDAKESRMAKQVLSSLYYENKTKPLQEITAKNLFGETIHASV 785 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-- 830 S +++ + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 786 SRMEKFFSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGN 843 Query: 831 -INHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIE 879 +Q+ ++ +I + +E+ S+ Sbjct: 844 LTEEECRQMAKQAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFR 903 Query: 880 KIFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-K 925 + + + + + + L G DRID+ + + I DYK+ + Sbjct: 904 PVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLA 963 Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 + Q+ + + I + A + Y + ++ + S + Sbjct: 964 LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAISKE 1023 >gi|154502321|ref|ZP_02039381.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149] gi|153796946|gb|EDN79366.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149] Length = 1116 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 112/923 (12%), Positives = 260/923 (28%), Gaps = 134/923 (14%) Query: 151 NLADIIDIIETEEKKWEDL----HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + +I +E+L L E + + +++ + + + L E + Sbjct: 120 EVKSVISEFTQYGVGFEELDVLMENLDEESFLYY---KLSDIRMIYEGFEQFLAEKYIT- 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ I + G TG P RL+ + + VL ++ Sbjct: 176 -KEELLDVLSQMVAKSEILKNSVIALDGFTGFTPVQNRLLGELMSICK--EVLITVEMDG 232 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + S L ++ I+ D L + Sbjct: 233 REDAFRYTHPYQL------FALSKQMVTGLVQIAGERKIEIADPIYLYDKPVYR------ 280 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 F +++ +++ A + EA A +R + E Sbjct: 281 ----FRSNPELGFLESELFRYSRKQYPDETDHLSVYAAGSPDMEAKLTAQKIRRLVREKG 336 Query: 387 ---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + A+I +D ++ T + I + + + + S+L+ + + Sbjct: 337 YHYRDIAVICSDMGTYADHLERACTEYQIPVFMDYKKSILLNAFVEYVRSVLSMVEQDFS 396 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ ++ +F E N + L+ + + Sbjct: 397 YESVFRFLRTGFTEFTRDEIDRLE--------------NYVVAVGLRGYKKWQAVWARKT 442 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + + + V + ++ + + + + + + ++ Sbjct: 443 SSADEEELAVLNGLRVRFVEMTQSLVFVLKQRKKTVRDICEAVYRFFVENQIQQKLKVME 502 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 N ++ + + + + LF K E + E+ +++ ++ V Sbjct: 503 NCFAEKKELALAKEYAQIYRIVLELFDKFAELLGDEGISLKEYCELLDAGLEEAKVGVIP 562 Query: 623 EKSSTLFILGTLESRL-LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------SDLNLK 675 + I +RL N L G N+ + P N + L+ + Sbjct: 563 PGMDQVVIGDVQRTRLKSNLKALFFVGANDTLLPGNMGQGGLLTERDREWFQKEKQALSP 622 Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWL----------------- 716 A++ M L + S ++ T+ +L Sbjct: 623 GAKEKTYIQKFYLYMNLTKPEEFLHISYSKVSSDGKTLRPAYLVWDLKKLFPKLVVTEEE 682 Query: 717 ---------------------QRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYT--TKQ 751 R LG + + L R R LD K+ Sbjct: 683 ALLMTQRELTLGEGLEFVIRGVRDRYLGVDESWKELYTWYRQNEGQKVDRILDAGFFKKK 742 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 P + L + + +S + +++ YA + L L + + + D G + Sbjct: 743 PDALTGEEAAELYGEKKQFSVTRMERFSACAYAHFLTYGLHLSDRE--RYEFEAMDLGNI 800 Query: 812 FHNIITELIKKRINKNTP-------EINHLMKQIIDSHFEKEN----LPPHIDIIWRHLF 860 H + +K K P + + ++++ ++ + + Sbjct: 801 AHQSMERFARKAQEKRMPWPKLEEVQRDAMIEESVEESIKDYGNTVLYSTARNEYMIVRI 860 Query: 861 HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD---I 915 ++ + + + E + +G DRID + V + Sbjct: 861 KQLIRRSVWALTRQMEKGDFEPSGYEMNFG----------SGKIDRIDTCEDEDVVYVKV 910 Query: 916 TDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFYIRLKQKFKID 972 TDYKTG + + QL + A + + A +FY R+K Sbjct: 911 TDYKTGMKSFDIVALYHGLQMQLPVYLNAALELEERRAPGKTVEPAGIFYYRIKD----- 965 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 ++ L EK LK L Sbjct: 966 --PIVDREKDDHALEEKILKELR 986 >gi|299138775|ref|ZP_07031953.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8] gi|298599411|gb|EFI55571.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8] Length = 898 Score = 192 bits (487), Expect = 3e-46, Method: Composition-based stats. Identities = 104/851 (12%), Positives = 253/851 (29%), Gaps = 79/851 (9%) Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL-DCHIPTAIWNTI 274 R + ++ G+ AT ++A+ A L + + T Sbjct: 74 RLLLNEAQEHDLWREVVTGTREGDEATLGSSDSLADMARQAWNLAHAYNATERLRAFATT 133 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + T + T Q + R+ ++ + + Sbjct: 134 HDARTFAGWAETFARGCEQRGYLSRAALETVLRQHIEAGTLTAPTHVTLAGFGDWVPART 193 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALIT 393 + D + +++ + + + A+++AD+E++E +++A +R +++ + ++ Sbjct: 194 ELLDAMRSVFVQHAMDVPLQLGAQRAIVQADDEQDELLALARWIRNFVEQRPSARVGVLL 253 Query: 394 ADRNLARRVKLELTRFG--------------INIDISAGIPLSTTLHSSILTSLLNAIFK 439 D R L R + S+G PLS+ + L Sbjct: 254 PDMEKDRAELETLFREILAPELQQIGIDLSSTPYEFSSGKPLSSLPMIAAALDLARWTQG 313 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + ++ L+ P + ++ +D DL+ + + Sbjct: 314 PLELGKVSALLLSPYLGTSGGQNQSAQ----------------FDAYDLRQA--KLLRPE 355 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + + S LA + PL + + +DW + Sbjct: 356 IDLPSLLYLAQQSSRGTAPLA---------WLQPLNAFFKRNENRGTPRGFADWAEFLRG 406 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + R L F+ L + + + + R T+ Sbjct: 407 LAKAANWPGERPLTGDEFQATIAWDHLLDQMATLDFRGRRVSFSTALRTLERQ-ANATLF 465 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--- 676 + + ++ + + FD ++ + WP NP L +Q+ L + Sbjct: 466 APPSNDAPVQVMTPANALGMTFDAVLFARATDANWPPVERSNPLLGWGLQASLGMPGTSQ 525 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + + + +++T + + S + L + + R Sbjct: 526 PRATERAQYALDRLLSSSSDVLFTYARENADGDQRLSPAIAELD-------WQQVAARDL 578 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 PPL + ++ + +A L + Sbjct: 579 NPASPAALQVTEEIVEDI---ASLPPLPSSNVRGGARVLQLQAACGFRAFAEIRLGATEL 635 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKEN--- 847 D + G+L H ++ ++ +++ L+ + ID +K+ Sbjct: 636 EASDAGFDARENGSLLHGAMSRFWEEVQSQSALQAMSRDARAQLLGRCIDQALDKDLNIQ 695 Query: 848 --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + + ++ +L+ E + ++ + I + + L DR+ Sbjct: 696 GRWDEAYVALQKERLQRVLLQWLDKEMERGP-FTVQYIEHDELIDIGPLDLKL--RIDRL 752 Query: 906 DLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV---ANL 960 D+++ G V + DYKT + PK ++ +PQL L A AG + KV ++ Sbjct: 753 DIVE-GGVFLVDYKTSYSSDPKNWLGERPDEPQLPLYALLPGAGELKGLAFAKVRPGRDM 811 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 ++ + + T + E+ L + G+ + + Sbjct: 812 KWLGYQDAEGLIPGTPARTVLDMQSQVEEWRTTLTTLAESFAGGDATVHPKDYPM--TCV 869 Query: 1021 QSEYDHLARVA 1031 L R+ Sbjct: 870 HCAQRLLCRLD 880 >gi|297531124|ref|YP_003672399.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3] gi|297254376|gb|ADI27822.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3] Length = 1172 Score = 192 bits (487), Expect = 3e-46, Method: Composition-based stats. Identities = 125/963 (12%), Positives = 262/963 (27%), Gaps = 136/963 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-------KYGMWWLLAADFL 188 L L A+ + L ++I + +L + Sbjct: 112 LKLFGRAADKHGFIEQLNEMITECKRYCLTPGELRRHAEAFEDGPDQPGRRLLADKLSDV 171 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + + + L + + L+ I I G P ++ Sbjct: 172 ALVYEELEKSL--IGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQ 229 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H V +D + T+ Q L + + I Sbjct: 230 LLRHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI--- 279 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + R++V ++ + V L EA N R Sbjct: 280 EEPIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRR 327 Query: 369 EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424 E ++A + + + + ALI R VK FGI + P+ Sbjct: 328 AEIEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHH 387 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 ++ + L + + A+ VK L + + A + LE L Sbjct: 388 PLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGD 447 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + R + + Q+ + +++ + + + L Sbjct: 448 KWTNNERWAYLR---YQALDGLNVPQTNEERQFEDMLNEWREALAPPLRRLERRLRRAED 504 Query: 544 TCGNL-SISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 G ++ + + + + R + E+ + L + +E Sbjct: 505 GRGFCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGT 564 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 E++ II +D + + SRL++ + G N+GV P Sbjct: 565 ESLPLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAK 624 Query: 658 TAKNPFLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NI 708 ++ ++ V + +L + A Q +D + +R L T L + Sbjct: 625 VKEDGLMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGK 684 Query: 709 PTIASRWLQRLLVLGGTDFFD------------------NLKKRGQCYL----------- 739 + S +++L L + Q YL Sbjct: 685 ALMPSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNY 744 Query: 740 -----------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIK 776 DW ++ + Y L + S S ++ Sbjct: 745 GIDPLWWDVYNTFIGHQDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRME 804 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINK 826 Q PYA +A L+L F+ + D G LFH I ++ ++ Sbjct: 805 QFQKCPYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRP 862 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFV 883 + ++ + I +++ L + + + E S I + Sbjct: 863 DCERLSAEAIERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGL 922 Query: 884 NIPA---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETA 929 + + + + L G DR+D +S + I DYK+ Sbjct: 923 ELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEV 982 Query: 930 QKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + Q+ + + + A + Y + D + A +L E Sbjct: 983 YYGLALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLE 1042 Query: 989 KSL 991 Sbjct: 1043 PFR 1045 >gi|169826778|ref|YP_001696936.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41] gi|251764607|sp|B1HN89|ADDB_LYSSC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|168991266|gb|ACA38806.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41] Length = 1169 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 118/968 (12%), Positives = 246/968 (25%), Gaps = 138/968 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191 SL A + + ++ L LK + L + Sbjct: 107 FSLFRQAAGKRGFTEEIETLLKEFSRYSVNSSVLAEVKESLKAIDAPNTLQAKTNDLYVV 166 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + ERL S ++ + ++ + I I G T L+ + Sbjct: 167 LQALEERLGTTYVDSEG--YYPILTEQLKYAETMKQATIYIDGFTAFTVRELELVRELLK 224 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 V+ ++ I E + T+ L + + I E Sbjct: 225 VTKHVTVVL---------PFDHIDEAFDEQALFHEAALTN--QRLHDIANEEGIDVEPPL 273 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + +F +P+ +K DV + EA N R E Sbjct: 274 HFYYTQRFQSEDLQHVEANFANM--------------VPHTKKTSGDVMVFEASNRRAEV 319 Query: 372 ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427 +IA + E + L+ L + ++ I I + + Sbjct: 320 HAIAREITKLTREYGYRYQDIVLLYRQAELYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486 + S L + + + VK L E + LE L Sbjct: 380 ELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTC 545 + + + ++ V + R + + E + L+ + L T K+ Sbjct: 440 EEPRWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKSLQDKLSIASTGKDIAT 499 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ + R E+ ++ + + + + Sbjct: 500 ALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWNEWINVLDQFVYMFGEQEMSVE 559 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 E I+ D + + +RL N + G+N+GV+P Sbjct: 560 EAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVAFVLGMNDGVYPTRMEYEGL 619 Query: 664 LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715 LS + + T+ + Q F A T L T + + S Sbjct: 620 LSDTEREWFSQIGYELAPTSSNRLLQENFLFYRAASTPSNKLYLTYPTADEEGKALLSSL 679 Query: 716 LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 LL + + + + R+ +++ Sbjct: 680 YIKKFIGNDKIAGLLSGVQAERVVMDPIELLDESALPYLRHPRTALAHLMVQLRQAEHSR 739 Query: 750 KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776 + + S S I+ Sbjct: 740 ELAPEWLALQKFYQQDPYWALIFDRVHYPITHKNEAEPLETYITQELYGQKLTSSVSRIE 799 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833 + P++ + L+L+ + + G LFH + + ++ I Sbjct: 800 KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRLQLSWIRLTKQ 857 Query: 834 LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883 +KQ+ E+ + +I + + S + I + Sbjct: 858 QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAI 917 Query: 884 NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927 + + I L G DRID + ++ I DYK+ Sbjct: 918 EASFGPGQHEQLPPLEIDLTSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSARDLDLN 977 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + Q+ S + + A + Y+ + + D L Sbjct: 978 EVYYGLSLQVLTYLDVAMENSTYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEEDRL 1037 Query: 987 SEKSLKNL 994 + +K L Sbjct: 1038 KQYKMKGL 1045 >gi|241895872|ref|ZP_04783168.1| ATP-dependent deoxyribonuclease, subunit B [Weissella paramesenteroides ATCC 33313] gi|241870915|gb|EER74666.1| ATP-dependent deoxyribonuclease, subunit B [Weissella paramesenteroides ATCC 33313] Length = 1188 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 116/970 (11%), Positives = 253/970 (26%), Gaps = 143/970 (14%) Query: 158 IIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 ++ W+D+ + ++ + L + + L + +AL Sbjct: 136 ELKQSGLSWDDVTDIADKLTNQETLQMKLYDLATIGQSLEDELAQRGQYLSSDLLLALKV 195 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 A + I + L+ + + G + D Sbjct: 196 YLATEKTDISHHYFFINDYSQMTSPERGLVEALITYAGGVTIALPADD------------ 243 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + + Y L L K + R M Sbjct: 244 -GSASLTESAISENDLFYRPKNLGRQLRDAAVTHKIPVIANTIEAQRKMSSGML----AV 298 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALIT 393 D + I + + + + +E +A +R + + L+T Sbjct: 299 EDFWIKYAQQGIIRDSYDADDAIEIWQTHTRYQEVEQMARLIRQEVAAGKHRYRDYLLMT 358 Query: 394 ADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 D + R+ I I + P+S + L LL+ + L+K Sbjct: 359 RDLGQYENIMPAVFARYEIPIFMDLDRPMSAHPLVAFLDKLLHLAPA-YTMTDVMGLLKT 417 Query: 453 PLAKFGFPEK-YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 L A E L N + D DR A ++ + Sbjct: 418 ELLIPDGVLLADYREALAETENYVLAKNIAGWQWTDKTPWQYDRQALTSDDEVTRERVAS 477 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDE 568 + + + + + L T + + K + N +++ Sbjct: 478 KDAQLAMIHDQISQTVAPFLHHLQQAPTAREMARELYNFITQIGIQKRLINWRDN-AIEQ 536 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 E+ + S+ ++ D+ T D + Sbjct: 537 GDLWSAQQPEQVWRVFISILDDFVQVFDSEVMTLEVLQDVFTAAFDSAKYAGIPATMDQV 596 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EK 679 I + + ++T+I+ G P T L ++ L E+ Sbjct: 597 HISESGIVQRTGYETVIVFGATNHNLPAVTRIKAILHDGDRAILQPALPDNVFLKETSEQ 656 Query: 680 YIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLL----------------- 720 + Q + A + LI+T + + + S ++ R+ Sbjct: 657 QMAQESLLMYRAMMVADQRLIWTYATSDGDGSQQPSTYVTRIQKQFQLPLVQFDALPDPM 716 Query: 721 ------------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-------- 754 ++ GQ W + K Y Sbjct: 717 SHHVDDYVGTPTSTIAQIIIANRQAKQRGTVDGQLSAAWRNLIQQVQKIAPYQLQHLLGS 776 Query: 755 ---------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 +P L S S ++ +PY + + L+L + Sbjct: 777 LHYQNEPEKLQPVLVNTLFGHDLKASISRLESYSRNPYEFFLQYGLRLQERQVLQ--LTP 834 Query: 806 TDRGTLFHNIITELI------KKRINKNTPEINHLMKQ-IIDSHFEKENL-------PPH 851 ++GTL H ++ +L ++ + T + ++Q I+ ++ Sbjct: 835 AEKGTLMHAMLEQLFQTLVTKQQVLGALTDDQLRHLEQDILQGLLTSDDPTYDIFNSSSR 894 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKMA----------IESIGIHLT 899 + + + L ++ + + + I V + + + + Sbjct: 895 MRFLTQQLAIQVHETMISMKRGQLLDGGVHTIGVEAGFGLPQSQLKPVEYDMPFGRVKVR 954 Query: 900 GFADR---IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLE-AAALKAGSFSQIDC 954 G DR ++ F+ I DYK+ A ++ QL A L + Sbjct: 955 GKVDRYDLVETNAGNFLTIVDYKSSKRVFDYSKAYAGLELQLMTYWTAMLMNKDV--LPA 1012 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 ++ + L+ + S ++L+ +L+ L Q EQ R Sbjct: 1013 GEMGGALFWTLQNPW-----------ISMNDLTGDTLQQLQSAADK-QAIEQG-----RY 1055 Query: 1015 SEKSNIQSEY 1024 +Y Sbjct: 1056 RGVLRTNDDY 1065 >gi|147678000|ref|YP_001212215.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI] gi|251764609|sp|A5D1P4|ADDB_PELTS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|146274097|dbj|BAF59846.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI] Length = 1157 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 134/1049 (12%), Positives = 278/1049 (26%), Gaps = 144/1049 (13%) Query: 55 RAIQ-ELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111 RA +R E + IL P + +E A LS + V + +RL Sbjct: 16 RACLEAIRKELLARPYGPPLILLVPEQATFQ--IEYALAATPGLSGFIRARVLSFRRLA- 72 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPAN-----------AIWLAKNLADIIDIIE 160 R++ I +L L + A LA + ++ Sbjct: 73 -YRVLREVGGAARAHIGELGKRMVLRRLLEQRRSELRVLGRSSGRPGFADTLARTLGEMK 131 Query: 161 TEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 T ++L L+ + + L + L + + L+ Sbjct: 132 TYCIGPDELARAAFDLREKGGAALLADKLEDLAKLCFDLEDYLA--GRFTDPDDYLNLLA 189 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 E + + + G +G P R+++ +A + + D ++ Sbjct: 190 DCLELSAEVRGTEVWVDGFSGFTPQEYRVLAALARTASRVNITLCADP-------AALSG 242 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF-LPPD 335 K + T+ + L + + ++R + + S + F P Sbjct: 243 KIDETSLFFPVRETYDRLLKMALQERIPLERPLILGGNTARFKSPAISHLEKYFFVRPAP 302 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395 + ++ N + V A I R + L+ Sbjct: 303 PCLNCSEGVVLAAAANPKAEAEGV-----------AREITALCRDRGYRYRDIVILLRDV 351 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + A + GI + I P+ ++ S L A+ + F + +K L Sbjct: 352 DSYAGLISSIFADHGIPVFIDQKRPVMHHPMVELVRSALEAVTEDWAFDPVFRYLKTDLV 411 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 E L +RG++ + L N +++ Sbjct: 412 PLSREEVDLLENYVLAHG--IRGSRWTDGRPWEYRRELTLEEDPGLNGSESVELEKVNRI 469 Query: 516 DKELAVLLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + L++ + + T + L + + + + E + Sbjct: 470 RHQATADLLEFCRSFMQAKNVREMSTALFNLLTGLKVPEQLESWSRQAEKEGRLEAAREH 529 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 +L ++L +++E E+ +I ++ + + + Sbjct: 530 SL----VWSGFTALLDQVVEALGDEVLEPGEYAAVIDAGLESLRLGLIPPGLDQVLVASL 585 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAH 686 SR + G+N+GV P T S + + L E K+ + Sbjct: 586 ERSRNPEMRAAFVMGVNDGVLPARTFDQGIFSDLERERLKAAGLELAPGGRRKFFEEQYL 645 Query: 687 DFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----- 739 + + + + L + + S + R+ L L Sbjct: 646 VYIALTRSSERIYLSYPLADGEGRALMPSPIVARVKELLPDVEERVWPVEPNAALLDDLE 705 Query: 740 -------------DWTRKLDYTTKQPHYK------------------------------- 755 R+ + Sbjct: 706 FVTGPRRTLSYLASQMREFKAGRRIDPLWWDVYSWFAAGEMREHCKRVLSGLFHSNREDR 765 Query: 756 -RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P L +P S S +++ P+A + LKL F D D G FH Sbjct: 766 LPPAVSMALYGRPLRASVSGLEKFRACPFAHFLSYGLKLKERAIF--KLDAPDLGRFFHA 823 Query: 815 IITELIKKRINKNTP----------EINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKI 863 + + + E+ + ++ E L + + Sbjct: 824 ALKLFGDRVREQGLDWGQLDREQCQEMAGEVVDLLAPRLSSEILLSTARRRYLTGKLRRT 883 Query: 864 SHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHL--------TGFADRIDLLKSG 911 + E +S + + + + + L +G DRI+ S Sbjct: 884 VQRAALVLAEHSRRSKFRPVGLELSFGPDGDLPAPVFTLADGSEMAVSGRIDRIEAAPSD 943 Query: 912 F---VDITDYKTGDNPKK-ETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLK 966 + I D+K+G K + QL AL+ + Y R+ Sbjct: 944 EGVYLRIIDFKSGKVTVKLTDIYHGLKLQLLAYLDVALEHARTLTGGNGLPGAVLYFRI- 1002 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLI 995 + D +E+ + LK L Sbjct: 1003 ---DDPLVNTDGPVPPGEEVEREILKKLR 1028 >gi|317470348|ref|ZP_07929739.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp. 3_2_56FAA] gi|316902152|gb|EFV24075.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp. 3_2_56FAA] Length = 1117 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 91/917 (9%), Positives = 235/917 (25%), Gaps = 120/917 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNAS 205 + + E L + L + + + + + + + Sbjct: 117 GFIDEMKSFFAETYQYDVSLEKLKEAVKSFENTDSLTLKMKDIVLVLEKFEDYMKDRYLV 176 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + ++ + K I I G TG P +++ + + + +D Sbjct: 177 --SEQLLDVLAQKITESEKLKGATIYIDGFTGFTPIQNKVLKKLLPYAKKIVAAFTIDEK 234 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + L ++ + L + Sbjct: 235 RAGGPYRDYELFAMPKKEI---------SQLKEMAVRQGVPILPDVILHPNAAGSKELRH 285 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + F P + D+ + N +EE+ I + + + Sbjct: 286 LEQNLFRYPFHV--------------YRGKTKDIRVCCLKNPKEESRYILGCIEHLVRKE 331 Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 K ++T D + GI I L + S L I Sbjct: 332 GYRYKDLVVLTGDMETYQPELEKCFEDSGIPCFIDGNRALRNNPCVETILSALKMIQMDF 391 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + + +K + E L + N + + Q Sbjct: 392 SYEMVFRYLKSGFSALEPEETDLLENFVIASGIRGYARWNRPFKSRAFTKEEMKQINQSR 451 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 T + E ++ + +++ + +T L + Sbjct: 452 ETFM-KETGPFKEGIRKRGITVLERLTHLHGFFLTLDIQGQMERKKEEFEAAGDLAMA-- 508 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 +++ + ++ ++ E + + E+ ++ + TV Sbjct: 509 -------------KTYDQIYGEVLNIMDQMAEILGEEELSFDEFCAVLETGLSEMTVGVI 555 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLK 675 + + +R+ L G+NEGV PK + ++ + +L Sbjct: 556 PPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTDSQREELLKAGISLAP 615 Query: 676 TAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDFFDNLK 732 A + +A L T + +++ + S + R+ L D Sbjct: 616 GAANQAYMEQYYLYLAMSKPDEKLYLTYASMDSSGESKAPSYLIGRIEKLFPGLKKDLDL 675 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770 + Y + + K + KP + A Sbjct: 676 QETPVYSVSEARERFVEKLQEFGEEKPDQEMAALYEVLNERKLVSPYLDAYFYSNEEKNL 735 Query: 771 ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 S + +++ +A + + L+L + D G +FH Sbjct: 736 DRHLTTLLYGKELENSVTRVEKFSGCAFAHFLQYGLRLRER--LVHEILPMDMGQVFHRT 793 Query: 816 ITELIKKRINKNTPEIN--HLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHS- 866 + + ++ + + +++ +++ + + +++ Sbjct: 794 LQFVGQEGSWDWEDDRERDRFVDSMVERALDEDPDKKEIFESSSRNQYTKERIRRMAKRA 853 Query: 867 -FLEHEEKIQSSIEKIFVNIPAKMAI----------ESIGIHLTGFADRIDLLKSGF--- 912 + ++ + + + + TG DR+D + Sbjct: 854 VWAVEQQIKRGEFTPYEYELGFSADDGLSCANLSLKDGTKMKFTGVIDRVDCYEDEENLY 913 Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFYIRLKQKF 969 + I DYK+G+ + QL + A+ + ++ A +FY + Sbjct: 914 LKIIDYKSGNMQFDFTKILNGLQVQLVVYMNAILELEGKKYPEKRMVPAGMFYFHVDDPV 973 Query: 970 KIDCITNDKKKYSADEL 986 + + L Sbjct: 974 IAPKTDREPEIEVLKNL 990 >gi|126652434|ref|ZP_01724606.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905] gi|126590705|gb|EAZ84820.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905] Length = 1169 Score = 192 bits (486), Expect = 4e-46, Method: Composition-based stats. Identities = 117/968 (12%), Positives = 246/968 (25%), Gaps = 138/968 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191 SL A + + ++ L LK + L + Sbjct: 107 FSLFRQAAGKRGFTEEIETLLKEFSRYSVNSSVLAEVTESLKAIDAPNTLQAKTNDLHVV 166 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + ERL S ++ + ++ + I I G T L+ + Sbjct: 167 LQALEERLGTTYVDSEG--YYPILTEQLKYAETMKQATIYIDGFTAFTVRELELVRELLK 224 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 V+ ++ I E + T+ L + + I E Sbjct: 225 VTKQVTVVL---------PFDHIDEAFDEQALFHEAALTN--QRLHDIANEEGIDVEAPL 273 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 N +P +K DV + EA N R E Sbjct: 274 HFYYT--------------QRFQSEDLQHVEANFGNMVPQTKKTSGDVMVFEASNRRAEV 319 Query: 372 ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427 +IA + E+ + L+ L + ++ I I + + Sbjct: 320 HAIAREITKLTREDGYRYQDIVLLYRQAELYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486 + S L + + + VK L E + LE L Sbjct: 380 ELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439 Query: 487 DLKSLVLDRIATQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + + ++ V + + E + + + + + L T K+ Sbjct: 440 EEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKEFQDKLSIAPTGKDVAT 499 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ + R E+ ++ + + + + Sbjct: 500 ALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWNEWINVLDQFVYMFGEQEMSVE 559 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 E I+ D + + +RL N + G+N+GV+P Sbjct: 560 EAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVGFVLGMNDGVYPTRMEYEGL 619 Query: 664 LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715 LS + + T+ + Q F A T L T + + S Sbjct: 620 LSDTEREWFSQIGYELAPTSSNRLLQENFLFYRAATTPSDKLYLTYPTADEEGKALLSSL 679 Query: 716 LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 LL + + + + R+ +++ Sbjct: 680 YIKKFIGNDQTAGLLSGIQAERVVMDPIELLDGNALPYLRHPRTALAHLMVQLRQAEHSR 739 Query: 750 KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776 + + S S I+ Sbjct: 740 ELAPEWLALQKFYQQDPYWALIFDRVHYPITHKNEAQPLETYITQELYGKKLTSSVSRIE 799 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833 + P++ + L+L+ + + G LFH + + ++ I Sbjct: 800 KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRLQLSWIRLTKQ 857 Query: 834 LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883 +KQ+ E+ + +I + + S + I + Sbjct: 858 QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAI 917 Query: 884 NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927 + + I L G DRID + ++ I DYK+ Sbjct: 918 EASFGPGQHEQLPPLEIDLTSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSARDLDLN 977 Query: 928 TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + Q+ A++ S+ + A + Y+ + + D L Sbjct: 978 EVYYGLSLQVLTYLDVAMENSSYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEEDRL 1037 Query: 987 SEKSLKNL 994 + +K L Sbjct: 1038 KQYKMKGL 1045 >gi|332637523|ref|ZP_08416386.1| ATP-dependent helicase/deoxyribonuclease subunit B [Weissella cibaria KACC 11862] Length = 1182 Score = 192 bits (486), Expect = 4e-46, Method: Composition-based stats. Identities = 102/946 (10%), Positives = 240/946 (25%), Gaps = 120/946 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNAS 205 A I ++ W+++ + + + L + + + L N Sbjct: 125 GFISQFASQILELKQAGLSWQEVRDMADALTQQGTLQMKLHDLALIGEALDQELATRNQY 184 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 AL A + I G + ++ + G + D Sbjct: 185 LSSQLLAALRVYLATEKTDVSHHYYFINGYSQMTTPERGVVEALIERAGGVTIALPADD- 243 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + ++ + Y +L L D + S+ R + Sbjct: 244 ------------GSASVTAESLSENDLFYRPKRLAQQLRQFATDHQVAVTASSVTMQRPV 291 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-- 383 + + + + K D+A+ +A +E +A +R + Sbjct: 292 SETITTVESF---WIAYEQEGVKPNGQTPTPKDLAIWQATTRYQEIEQMARMIRQEVASG 348 Query: 384 -ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + L+T D + R+ I + + P++ + L L Sbjct: 349 KRRYRDFMLMTRDLGQYENMLPAVFARYQIPVFMDLDRPMAAHPLVAFLDKLFRLAPA-Y 407 Query: 442 DFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + L+K L A E L N + D + DR Sbjct: 408 TIADVMGLLKTELLIPEDVTVAEYREALAETENYVLAKNTPGWRWTDKQPWQFDRNVADS 467 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 ++ + + + + + + + L + + Sbjct: 468 DDEVLREHVAEKDAQLALIHDQISTVVAPFLADLAQAPDAREMARRLYLFLTEIGMQQRL 527 Query: 561 LQN--VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 L + + E+ +T + + E +++ D Sbjct: 528 LAWRDEAIAQGDLWTAQQPEQVWRTFIGVLDDFVTVFDHTPMTIAELQELLKAAFDSAKY 587 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + + + + T+I+ G P T L + L + E Sbjct: 588 TGIPATMDQVRVSESGIVQRQGYHTVIVFGATSVNLPATTRTKALLHDGDREILQDRLPE 647 Query: 679 KYIGQAA-----------HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL-------- 719 + M LI+ + + S ++ RL Sbjct: 648 HAFLRETSEQQMAQESLLMYSAMMTAADRLIWLYATSDGEGSQQPSTYVTRLMKQFNVPV 707 Query: 720 --------------------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 L Q ++ Sbjct: 708 RHFAALPDPNTMRIGDYVGTVDSTLAHLVSVNRQAANQQPAGTLSSAWQTLQQQVSQMAP 767 Query: 748 TTKQP----HYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFI 796 R +P L + S S ++ +P+ + + L+L Sbjct: 768 DKTARVMGGLTYRNEPQQILASLMSQLFSNDLKVSISRLENYAKNPFEFFLQYGLRLKER 827 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKN--------------TPEINHLMKQIIDSH 842 + ++GTL H I+ +L + I ++ I + + + D+ Sbjct: 828 QVLQ--LTPAEKGTLMHTILEQLFAELIRQDKTLSELTDSELENLERNILNGLLRSGDAT 885 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK--IFVNIPAKM----------A 890 F+ + + + + L ++ + L + + V + Sbjct: 886 FDIFSSSARMTFLTQRLAAQVHDTVLNMKRGQLVDGGVHTLGVEAGFGLPQSKLKPVQYE 945 Query: 891 IESIGIHLTGFADR--IDLLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 + + + G DR + +G I DYK+G A ++ QL A+ A Sbjct: 946 LPLGKVTVRGKVDRYDLVETPTGNFLTIVDYKSGKRTFDYTQAFAGLELQLMTYWTAMLA 1005 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + + + ++ + L+ + ++ + Sbjct: 1006 NA-TVLPPSEMGGAVFWSLQNPWIKVKDIAGDTLAELQTQADVAAA 1050 >gi|46908501|ref|YP_014890.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes serotype 4b str. F2365] gi|81565412|sp|Q71X98|ADDB_LISMF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|46881773|gb|AAT05067.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes serotype 4b str. F2365] Length = 1157 Score = 191 bits (485), Expect = 5e-46, Method: Composition-based stats. Identities = 124/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L L + + LA++ ++ EE ED+ Sbjct: 97 AALDQRDKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + I + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISIIYQKYEELLA--DKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L I Sbjct: 214 ALMRKCDKVTVSLALNV---PEIKHGLDEYSMFKASTEAY------YALLELAKLNSINV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ + ++++ +A+N Sbjct: 265 EEDKFFLENKRAKTESLAFLANAWGHNKFMAFKEE-------------PHNLSVHQANNR 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E +A +R + A++T + + + + + I I I +S Sbjct: 312 RAEIEGVAREIRQLTLNGYRYQDMAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA-KNALELVALRGNKNSY 483 + S L+AI + I VK + + R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNK 431 Query: 484 DIMDLK-SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + +I N ++ L+ + L + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDGEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ +S+L + +E Sbjct: 492 EFALALYHFLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGKET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + +++II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI 711 N LS + L +A+ IG+ + L + + + Sbjct: 612 DNGILSDQDRDALRAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 712 -----------------ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 S +L +L + ++ + T +L + Sbjct: 672 SESNYLRKIKGQFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPL 731 Query: 755 ------------------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + K L + S S +++ Sbjct: 732 SSVWWDAYNSYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHFAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 RQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIHLT----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 + + + ++ G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIVKELQKNSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|308177922|ref|YP_003917328.1| ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] gi|307745385|emb|CBT76357.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] Length = 1070 Score = 191 bits (484), Expect = 6e-46, Method: Composition-based stats. Identities = 134/1035 (12%), Positives = 271/1035 (26%), Gaps = 133/1035 (12%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 L++ L S+ I PT+ +R E +++ P++++ + Sbjct: 40 HLLIDTAVAHLDAGLDPQSLLIIGPTRLTAASIRDELSRR-AQRTFTEPVVRTWSSYAFD 98 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-YPESPLSLPISPANAI 146 L P + RLL + + L L + Sbjct: 99 LIRR--ARVEGLLPQLERAPRLLSGPEQDTLIGHLLEGHSAGLTEGPQWPTELELAVETR 156 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K + + D + + D+ L + W AA F + L A Sbjct: 157 GFRKEIREFFDRVSELGLEPADIADLGQQAKRPEWHAAALFYQEYRDLLD--LGSAEAFD 214 Query: 207 PVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 P G + E H + I++ + + RL+S + ++ Sbjct: 215 PAGLITRAAQILEENQGFLHEEQDRMALILVDDLQEATLSQHRLLSLLGKDRA---MVAF 271 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + + N ++T + S +L L + + + + + + Sbjct: 272 AAPDSVVQGFRGARTDELHRFAQNYAHTT--EASFMELTGGLRMSPQITEAWKRIVSRVP 329 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + + ++ +TS+ + +N E IA + Sbjct: 330 LAAGLRGRTIEALNTSEHELCQA-----------------LVFENSTLEERFIAQRIVHL 372 Query: 382 LDENKK---KSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAI 437 + A++ + + R L GI + A IPL L LL+ Sbjct: 373 NLYENRSLADIAIVVRNGSQVRSFSRFLEGQGIGVQVPPAEIPLKDEGAVRPLLDLLDLA 432 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 F + + L+++G R L +L L A Sbjct: 433 FSDSLTDDPLLMQNLLLSRYGMSTALEIRRIRQLLRQQEAEAGGRRSSQELLETCLREPA 492 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 RL L L T L Sbjct: 493 LADKLGKPGFGLKRLLSMYGALQEELNSGTATPETALWAMWEASGRAKAWR--------- 543 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L + ++ + I+ + + ++ Sbjct: 544 EEALGTGTAARRADHDLDAVLSLFQAAERFVDQLPGASVKQFID-----HILHQDLPMDS 598 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + T+ +L T + + + + GL EG WP + L +D Sbjct: 599 LATRAAGGQTVTVLTTAAAAGKQWPVVFIPGLQEGSWPNLRLRGELLGSNALADAAEHGI 658 Query: 678 EKYIGQAAHDFEMANGTRHL-----IYTRSLRE------NNIPTIASRWLQRLLVLGGTD 726 + + L +R+ + +N + S +L + Sbjct: 659 DFLATRTPTHLVRQIRNDELRSFSNAVSRAQDQLICTAVDNEDSQPSSFLDLVEPPCPEG 718 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP------------------------ 762 R + +L T ++ P Sbjct: 719 REPTAVPRIRSLPALVAELRSTAEKAKAASLGAVPAPADVEAHSLYQDAVHVLGRLAHAE 778 Query: 763 ------------------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 E QPR S S+++ L+ P + + Sbjct: 779 QPVRGAHPSSWWGLSPVTTTEPVIPEDQPRRVSPSKVETLVKSPLNWFVQSAGGTAAHDF 838 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 GTL H+I E + E +++Q EK Sbjct: 839 ------AASLGTLIHSIAEE----HPEASGSEYERILEQRWPE-LEKLENWEGQR--DFD 885 Query: 859 LFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVD 914 + + F + Q E + +P ++ + + I L G DR++ +G V Sbjct: 886 RANGMLRKFAAYCVTMRQEGRELVAREMPFQVEVPAADGSHIQLRGIIDRVEADANGKVR 945 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-----CRKVANLFYIRLKQKF 969 + D KTG + + L QL + A++ G+ + + + A + + Sbjct: 946 VVDLKTGSSAPTKE-ATLEHLQLGVYQTAIQLGALQEHEETAGLPDEPAGASLVYVGTNT 1004 Query: 970 KIDCITNDKKKYSAD 984 K + D Sbjct: 1005 KSASVREQPSIGDED 1019 >gi|145589487|ref|YP_001156084.1| hypothetical protein Pnuc_1306 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047893|gb|ABP34520.1| DNA helicase/exodeoxyribonuclease V, subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 994 Score = 191 bits (484), Expect = 6e-46, Method: Composition-based stats. Identities = 156/1080 (14%), Positives = 308/1080 (28%), Gaps = 145/1080 (13%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 ++P + I P++ +E+ + N + N R + + T + +R Sbjct: 11 QQQPYSWAITPNAGALKELANGIWNCAVQTNQRP-----------LVVLSTAGPLMGVRR 59 Query: 63 EFI----EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 LP + S D +E ++ S+++R L Sbjct: 60 ALEVYRPADLPNHLAFLPQVISFQDWLE-----AAPGAWKFPKKQSDLERWL-------- 106 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 + ++ S A LA+ + D + Sbjct: 107 ---GVYSTLRKHPDLQAWFKAESETGAWGLAQAIVKACDTLSKA--------------VS 149 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 + + + + + N V + +A Sbjct: 150 PHLQ---KQIHVFMQQYESDQDQQNKIGEVWGREVQTLLDATIQEAYRG----------- 195 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 V N + + + + ++ + + H Q Sbjct: 196 -----MARKVVDQEANVLLTFWRYTASVSDPAFRNQFAIAAHLHALAQAQAVH-QARPLI 249 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI-----Q 353 ++ D D + + ++ ++ + I +K Sbjct: 250 WVETADPTPIDQEIIADLLHQYAQLAPAIEVKMDWSAVGLWPEAIQGGDKSTQAVQNVHH 309 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI 413 L+ A E A + A + L + K AL+ DR +ARR + L R G + Sbjct: 310 AQIEGWRLVSAKRFEELAWTAAKTIEQHLIDGKTNLALVAQDRLVARRARALLARLGPAL 369 Query: 414 DISA--GIPLSTTLHSSILTSLLNAIFKLNDFMA---IATLVKHPLAKFGFPEKYLSRAK 468 +I+ G LSTT ++ L S L I D + + +++P Sbjct: 370 NIADETGWKLSTTRAAAALNSWLELIQSPKDGPSVKVLLEFLQNPFLDIEKI------LN 423 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + + +M K+ + S + L+ + Sbjct: 424 REKDFCIGLIAELEDILMASKAESGWTTFYLAIERAQQYAVKTASAIPSSALLELLQFVR 483 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + K + N L + T L+ + + F Sbjct: 484 ERHHEWSKLKVDCNKAYKLLQANLQATGMATSLEKDSAGKQ-----------LLEVLKSF 532 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-SSTLFILGTLESRLLNFDTLILG 647 EW+ +I +++G + + + + L IL +RL FD ++L Sbjct: 533 DLHRPDHQLTVMRLNEWLSLIKTVVEGASYQEEGGDARANLSILPLSSARLREFDAIVLV 592 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE 705 G +E P + F S + L T E Q A D ++ + +S + Sbjct: 593 GCDEQQLPAYSEPPLFFSDALNQLLKTSTIEMQFVQQARDLSQLLVSCSQVDLLWQSKSK 652 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 N P S W+QRL + + ++ +P+ E Sbjct: 653 NGEPLRPSAWIQRLQ-------------SKVDWHALSPQIQKRVFEPNPIDMAVAHFEED 699 Query: 766 QPRTYS--FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 P S S K L + PY Y R +L L I + D + G H ++ Sbjct: 700 LPMPLSMSPSAYKALRDCPYRYYVRSLLGLRKIKSVDEGFDASLAGQTLHQVLKSFYHSL 759 Query: 824 I-------------NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 + + + + F + + K SF++ Sbjct: 760 KTEEHKNPNLKTQDEERHEWMEARLNMESEQEFAPLIEGDARVMGALRDWQKQIPSFIDW 819 Query: 871 EEKI-QSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGF--VDITDYKT 920 + + Q+ + + + I + GFADR D+ + DYK Sbjct: 820 QLQREQAGWQYFDGELKVGFDLPFADIDGNFKTIRIEGFADRFDIHIDDSKLASVIDYKN 879 Query: 921 GDNPKKETAQKLI--DPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCIT 975 + + + + DPQL + A AA ++ ++ R+V ++ LK + Sbjct: 880 QRFERVKQRAEHLLDDPQLLIYARAANESQENHKLLGRQVKQAEWVALKADLSKEAQKAA 939 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 ++ E+ + + E V L + Q F E E + R W Sbjct: 940 RSQEVQEMPEMMMQFSAQITEDVQGLWSKKPMQAF-----APEGVCQYCEARGICRKGFW 994 >gi|304385835|ref|ZP_07368179.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus acidilactici DSM 20284] gi|304328339|gb|EFL95561.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus acidilactici DSM 20284] Length = 1187 Score = 191 bits (484), Expect = 6e-46, Method: Composition-based stats. Identities = 119/1068 (11%), Positives = 292/1068 (27%), Gaps = 169/1068 (15%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTK---RAIQELRSEFIEIT 68 S + ++ + R VP ++ +L + E + Sbjct: 9 PASVDHLDAVAETIIELQQQQKQRKIYY----------LVPNHIKFQSEIQLLQKLREKS 58 Query: 69 GK-KSTILP---IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 I S+ + + Y P ++N + L R+I+ +++L Sbjct: 59 DSAGPVFAQKDIQILSISRLAWFFLRNSSIYQY---PRLTNSSTSMLLYRIIVEHQDELL 115 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL----HALKNEKYGM- 179 L + + L + + + + E+L L + Sbjct: 116 -------------LFHNIDAQLGLIQEITSQLAEFKQGNVSPENLSQIIDQLAENEDPQL 162 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 + L I + E + + AL A+ M +I+G + Sbjct: 163 DLMAKLHDLNIIYTAYDEAI-QQKFVDSSDILRALTDQLAK--MDLHAQSFVISGFSNFT 219 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 L+ T+ ++ + + KL Sbjct: 220 AEELNLIQTLIKANATVVI----------------DLVMERNPLNEKLSENSLFFENEKL 263 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 ++ + + + + + L + N + + V Sbjct: 264 FFRINEWARENRIQVVSPRVVTKKRVNDDLRKLERYWVASTQGQLG----QNGHEQNNSV 319 Query: 360 ALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK-LELTRFGINID 414 ++E ++ E +A A+R + N +++T + + +F I I Sbjct: 320 EVLEFNSRYAEVEHVATAIRQMMTKDDRLNFSDFSVLTRHLSDYDTIIKPIFDQFDIPIF 379 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK----YLSRAKNA 470 + + ++ +L + + + + L+K L + ++ Sbjct: 380 YDMQVAMKNHPLLELINALFDVQKRHFRYEDVMRLLKTGLLRPENDADPDGKDFVKSVQI 439 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--RLSEEDKELAVLLVDHIL 528 E LR + R + R E K+ V V+ Sbjct: 440 TENYVLRQGIYGSKWLQKAPWQYQRFNDVDMEQQTDEEREINRRINEIKDYVVKTVNPFF 499 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + L + + + D + E+ +T ++ Sbjct: 500 NQLAVAENGAEAAKALYQFLIRNHVDQRLLAWRDQWIEDGNLAKAA-EPEQTWETFVTML 558 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + ++ ++ +I ++ + T + I + ++++ + + G Sbjct: 559 DEFVDILGDQPFDSNNFIGLLNAGFENATYSQIPSTLDQVLISESGMVQMMDRKVVFIIG 618 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EKYIGQAAH--DFEMANGTRHL 697 + P+ N FLS+ ++ ++ + A E+ + Q + G++ L Sbjct: 619 ATDRAMPEQIQDNDFLSQEGKAQVSDQLADDQFLKMSNERQMRQEPYLNYLTFMIGSQRL 678 Query: 698 IYTRSLRE-NNIPTIASRWLQRLLVLGGTDFF---------------------------- 728 I+T R + S +++R+ + Sbjct: 679 IFTYPKRGNDGTDFKLSPYVERIKAYFEIEVQCLPSRPAVDQPLIQPFIGSKRSTLSHLV 738 Query: 729 -------DNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQ 766 ++ + + L+ +R P L Sbjct: 739 QYARSMKESKQPADVRWNLIYSILEAGRWHDLTERLMGSLSYKNVPRKLKPDIVTQLYGD 798 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S S++++ + Y+ + + LKL D D G FH + L+K Sbjct: 799 KIYASVSKLEEFFRNEYSYFLKYGLKLQERET--ADLSPADTGQYFHAAMDNLVKVITQA 856 Query: 827 NT---PEINHLMKQIIDSHFEKENLPPHIDII--------WRHLFHKISHSFLE--HEEK 873 + +KQ+ E D R+ + + + ++ Sbjct: 857 DLNFNEVNQTQIKQVTKRVLENMRQDSQFDQFNSTYRMGYLRNQLDRTVETMVTAIFKQL 916 Query: 874 IQSSIEKIFVNIPAK------------MAIES-IGIHLTGFADRIDLLK-SGF--VDITD 917 Q+ + I + +++ G DRID + G + + D Sbjct: 917 AQTRMRPIASEQMFGQIGLKEGLPALNFKVNGKQEVNVRGKIDRIDKINIEGQPYLGVVD 976 Query: 918 YKTGDNP-KKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 YK+ A + Q+ L ++ + ++++ Y Sbjct: 977 YKSSTRKFDFADAYYGLAMQMLLYLDVVQQNRQRIDPHEQARLSSALY 1024 >gi|305679610|ref|ZP_07402420.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC 14266] gi|305660230|gb|EFM49727.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC 14266] Length = 1095 Score = 190 bits (483), Expect = 8e-46, Method: Composition-based stats. Identities = 131/1060 (12%), Positives = 288/1060 (27%), Gaps = 147/1060 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE---------------EKFT 90 V T++A Q+L + G+ + I P I +L + F Sbjct: 64 QVLGLTFTRKAAQQLGKRINDRLGQLAGI-PDIAALDPSGRLANRLRSAGPTTSTYDAFA 122 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L+ + L PV R++ L I + + +L + + L Sbjct: 123 GKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGELSMRHTTGHVVDT--LLTLTA 180 Query: 151 NLADII---DIIETEEKKWEDLHALKNEKYGMW---------WLLAA----DFLKIASKY 194 L + + ++ E + L W + L + +K Sbjct: 181 ELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKILGWQETQFHRIELLPLVTK- 239 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV 249 +RL + N + R E+ + +++ + A L+ ++ Sbjct: 240 LKDRLKDENLVTFGEQMSLAARLAVENPSVGKVLRNRYKVVMLDEYQDTSHAQRMLLRSL 299 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G V D W T + N ++ PQ + Sbjct: 300 FA---GGAVTAVGDPMQSIYGWRGATAANLNRFVTDFAID--PQ------------EPAV 342 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 L + + + ++ D+ L + Sbjct: 343 KNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLSSPPSAVAGDIQLGYFPTIAD 402 Query: 370 EAISIAIALRMSLDENKK----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 E +A L + +A++ + E R GI +I L Sbjct: 403 EREFVADTLAELYNNRDTAKPFTAAVLVRQNAHTGPIAKEFQRRGIPYEIVGINGLLDVP 462 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + + ++ + + D A ++ P G + + A EL + + D Sbjct: 463 EVADMVAVATMLIRPTDSAAALRILGGPAVGLGVRDIQALA-RRAGELSGRATSGKATDS 521 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNST 544 +D + + IA + D + + + L + + + + Sbjct: 522 VDPAVKLGEEIAEVLAADAENIVGLTDAIADLGEPEKYSEEGYRRLGRLSSQLRRLRQTV 581 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S+ D + R+ P L L L ++ + + Sbjct: 582 AAGSSLPDLFAEIERVMGIRTEVLSRENPRLDGAVGTIHLDKLHQEVANFATIPNTTLSQ 641 Query: 605 WIDIITRL---IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 +D T G + ++ + IL +++ L ++T+ + N + K A Sbjct: 642 LLDYFTEARCQESGLELGEVQVRNDRVQILTVHKAKGLEWNTVCVLHANNRDYDKTRAST 701 Query: 662 PFLSRVM----------------------------QSDLNLKTAEKYIGQ--------AA 685 + M ++ L + A Sbjct: 702 WLTNPAMVPSTLRGDAAESGDTVGSPVLDTSWLENRAQLEAECAAHIEEFRQSLSEESTR 761 Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIA---SRWLQ-----------RLLVLGGTDFFDNL 731 + + + ++ S +L D Sbjct: 762 LFYVAVTRAAQRLIVTASALDDNERDTEPCSNFLLIKRNASTDSIVAWHDPAEAAATDTS 821 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + + T TK ++ ND + ++ + + Sbjct: 822 DEPSEVQQSPTGMFPKPTKTVDLLTGADLVRKAIAQQSVGDPIAFNQDNDLFQLWEKDVT 881 Query: 792 KLDF----------IPHFKKDPDRTD----------RGTLFHNIITELIKKRINKNTPEI 831 L + TD + + + T Sbjct: 882 ALIEEYQRLQSDIVEVELSPELTATDIVALKQNPEQFARRQRRPVPFKPNRYAKRGTEFH 941 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + L ++ E+ P +D ++ F+ + +FV P +++ Sbjct: 942 SWLEQRFGAPTLLDESELPGMDEEITPGQLQELKDKFVA---GQFADRTPMFVEQPFEVS 998 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I+ GI + G D + +SG I D+KTG P + + L+ QL++ A Sbjct: 999 ID--GIVIRGRMDAVFRDESG-WHIVDWKTGQLPSRADMRYLM-MQLAVYRIAWAQ--LQ 1052 Query: 951 QIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 ID ++ A+ +Y+R + D + ++++ L+ + Sbjct: 1053 GIDPDEIHASFYYVRYDKLSSADNLPSEREIAETLRLAAQ 1092 >gi|261418925|ref|YP_003252607.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61] gi|319765742|ref|YP_004131243.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52] gi|261375382|gb|ACX78125.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61] gi|317110608|gb|ADU93100.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52] Length = 1172 Score = 190 bits (483), Expect = 9e-46, Method: Composition-based stats. Identities = 128/960 (13%), Positives = 256/960 (26%), Gaps = 130/960 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----- 190 L L A+ + L ++I + +L L Sbjct: 112 LKLFGRAADKHGFIEQLNEMIAECKRYCLTPGELRRHAEAFEDGPSQPGRRLLADKLSDV 171 Query: 191 --ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + L + + L+ I I G P ++ Sbjct: 172 ALVYEELERSL--IGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQ 229 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H V +D + T+ Q L + + I Sbjct: 230 LLLHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI--- 279 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + R++V ++ + V L EA N R Sbjct: 280 EEPIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRR 327 Query: 369 EEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTT 424 E ++A + + + + ALI R VK FGI + P+ Sbjct: 328 AEIEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHH 387 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 ++ + L + + A+ VK L + + A + LE L Sbjct: 388 PLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGD 447 Query: 484 DIMDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + R A N + + + E L + + L + + Sbjct: 448 KWTNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRG 507 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + ++ + E E+ + L + +E Sbjct: 508 FCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAESL 567 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 E++ II +D + + SRL++ + G N+GV P + Sbjct: 568 PLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKE 627 Query: 661 NPFLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NIPTI 711 + ++ V + +L + A Q +D + +R L T L + + Sbjct: 628 DGLMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALM 687 Query: 712 ASRWLQRLLVLGGTDFFD------------------NLKKRGQCYL-------------- 739 S +++L L + Q YL Sbjct: 688 PSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNYGID 747 Query: 740 --------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLI 779 DW ++ + Y L + S S ++Q Sbjct: 748 PLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRMEQFQ 807 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTP 829 PYA +A L+L F+ + D G LFH I ++ ++ + Sbjct: 808 KCPYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRPDCE 865 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIP 886 ++ + I +++ L + + + E S I + + Sbjct: 866 RLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGLELS 925 Query: 887 A---------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKL 932 + + + L G DR+D +S + I DYK+ Sbjct: 926 FGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYG 985 Query: 933 IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + Q+ + + + A + Y + D + A +L E Sbjct: 986 LALQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLEPFR 1045 >gi|317153566|ref|YP_004121614.1| hypothetical protein Daes_1856 [Desulfovibrio aespoeensis Aspo-2] gi|316943817|gb|ADU62868.1| hypothetical protein Daes_1856 [Desulfovibrio aespoeensis Aspo-2] Length = 966 Score = 190 bits (483), Expect = 9e-46, Method: Composition-based stats. Identities = 156/1070 (14%), Positives = 313/1070 (29%), Gaps = 167/1070 (15%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 +V I + F + L + +T+ P R + L++ + Sbjct: 3 HVTLIPWQADFIPALGRLL-------------AGRDDFSDLTVLFPHNRPRRYLKAFLRD 49 Query: 67 ITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 T + LP + S+ D A L + P V R L+L ++ L Sbjct: 50 HTALPRPVFLPRMVSIADF-----VAGLRRDLSDQPVV--QARQLDLVEMLRTVVADLRR 102 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + L L + E + W + A Sbjct: 103 DGRGL-----------------------------------LARLPEMDREAFLPWGIRLA 127 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + T+ V A + + + + G T Sbjct: 128 RLADDILRQDTDPDDLAYMDGEVSPYAAALLEQLSAIHHAYVTRLFARGWTTPGLDWRFA 187 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 +A D + A + ++ + Sbjct: 188 TRNIAQVAG-----HLADTPMVAAGFYALSGAEDTLFRRLWED----------------- 225 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD---VALI 362 L V + + + + + + ++ IP + + Sbjct: 226 -----DILHPVIHSDPALATGEEPHWSTAEHTAWLHRWRVKAVIPPGEDVPLSGPVIRFC 280 Query: 363 EADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 E + + ++A +R ++ +A+I D V L + +IS G P Sbjct: 281 EGFDRHSQLAAMADDMREAMAAGSGLDDTAVILPDEGALMPVLHHLPE--DDPNISMGYP 338 Query: 421 LSTTLHSSILTSLLNAIFKL-----NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L T + ++ ++L + + L++HP + PE R + A Sbjct: 339 LERTALARLVETILTLQENRLGDGRYHWRDVVALIRHPYLRLLGPEHKPLRTLFQVWEAA 398 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 +R + D + + D I + + + L ++ H L P+ Sbjct: 399 IRRGERHIDPLAWEPPYADEILDSVDQS-----------VAEPLRRAVLHHCLTAFEPVA 447 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + ++ G ++ L + L + L L T S + Sbjct: 448 SLDDLGDALAG---LAAMLHAHGERLWHTYLVDAECLFRL-------TTSVVPQLRGAEA 497 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 S + + ++ +I E V + E + L +LG LE+RLL+F L + E P Sbjct: 498 SPLPLSQPVLFSMLRSMIGQERVSFEPEPLAGLQVLGVLETRLLHFRRLFILDAVEERLP 557 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLREN----NIPT 710 +P L ++ L L A + + ++F G R + + + Sbjct: 558 GTNPFDPLLPDPLRRLLGLPDARQRDHVSGYNFHRLLMGAREAVVYYQSGIQPGLLDQKS 617 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----- 765 + SR++++LL L + G + T P EA Sbjct: 618 VRSRFVEQLLWE-REKREGRLTEPGDPRIRIVTFPAGTVPTGPAPIPATQAVREALLRTL 676 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + R S S + + +N P Y + + + ++ DR++ G+L H+++ E + I Sbjct: 677 ETRGLSPSSLDRYLNCPKLFYYASLSGVRPVDEIAEEGDRSEFGSLIHDVLREFLTPHIG 736 Query: 826 KNTP---EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 T + + + + L + + R L + Q Sbjct: 737 VGTDLGSLDPAPLVALYEERLKTSELFRQLPVDTRMALLMTGRHRLRAFVESQEPATLTG 796 Query: 883 VNIPAKMAIESIGIHL--TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP----- 935 + + +E+ G+ + TGF DRI+ G + I DYKTG + DP Sbjct: 797 LEQRLETTLETDGMTIGFTGFLDRIERRSEG-IMILDYKTGGVTVPKKTFWGDDPLWARV 855 Query: 936 -----------------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 QL + + I+L + +I+ Sbjct: 856 AHYDPAAPDPLLLTDLSASLRSVQLPAYLYLYSR-----VHGEIPHDAGLIKLAEDGRIE 910 Query: 973 CITNDKKKYS-ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + K E+ E+ + +L+ + G F + Sbjct: 911 RLFGPKWPDDHRSEIVEEMIPHLLATLVRHMTGAAEFPAQPGRQCDWCAF 960 >gi|299535965|ref|ZP_07049284.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1] gi|298728570|gb|EFI69126.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1] Length = 1169 Score = 190 bits (483), Expect = 9e-46, Method: Composition-based stats. Identities = 115/968 (11%), Positives = 250/968 (25%), Gaps = 138/968 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191 SL A + + ++ L LK A+ L + Sbjct: 107 FSLFRQAAGKRGFTEEIETLLREFSRYSVNSSVLAEVTESLKAIDAPNTLQAKANDLHVV 166 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + ERL S ++ ++ + I I G T L+ + Sbjct: 167 LQALEERLGTTYVDSEG--YYPILTEHLKYAETMKRATIYIDGFTAFTVRELELVRELLK 224 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 V D + ++ L + I E Sbjct: 225 VTKQVTVALPFDHIDEAYDEQALFHEAALTN-----------QRLHDIAKEEGIDVELPL 273 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 R + +D+ P +K DV ++EA N R E Sbjct: 274 HFY-----KTQRFHSKDLQHVEAKFADLE---------PQTKKTSGDVTVLEASNRRAEV 319 Query: 372 ISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427 +IA + E+ + L+ +L + ++ I I + + Sbjct: 320 HAIAREITKLTREDGFRYQDIVLLYRQADLYDPLITSIFQQYEIPIFTNTKKTMLHHPLI 379 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIM 486 + S L + + + VK L E + LE L Sbjct: 380 ELSRSALEVMTSNWKYEPVFRGVKTDLFFPLQAELTIWRERADRLENYCLAQGIYGERWF 439 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTC 545 + + + ++ V + R + + E + L+ + L + K ++ Sbjct: 440 EEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQPLKLLQDKLDSAKNGRDIAT 499 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLP--NLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ + R E+ ++ + + + + Sbjct: 500 ALFELIESLQVYDKLQAMKDRELERGDALAASEHEQAWNEWIAVLDQFVYMFGEQEMSVE 559 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + I+ D + + +RL N + G+N+GV+P Sbjct: 560 QAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVAFVIGMNDGVYPTRMEYEGL 619 Query: 664 LSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRW 715 LS + + + T+ + Q F A T L T + + + Sbjct: 620 LSDIEREWFSQIGYELAPTSTNRLLQENFLFYRAITTPSNKLYMTYPTADEEGKALLASL 679 Query: 716 LQ--------------------------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 LL + + + + R+ +++ Sbjct: 680 YMKKIIGNDKKAGLLSGVSIERVVIDPIELLDGDVLPYLRHPRTALAHLMVQLRQAEHSR 739 Query: 750 KQPHYKRPKPFPPLEAQPRTY---------------------------------SFSEIK 776 + + S S I+ Sbjct: 740 ELAPEWLALQRFYKQDPYWALIFDRVLYPITHKNEAEPLETYITQELYGQKLTSSVSRIE 799 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---H 833 + P++ + L+L+ + + G LFH + + ++ + I Sbjct: 800 KYFRCPFSHFTTYGLRLEER--AEYRLETFAMGDLFHEALKWITEETHRQQLSWIRLTTK 857 Query: 834 LMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFV 883 +KQ+ E+ + +I + + S + I + Sbjct: 858 QIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTMTALTQHANVSHFKPIAI 917 Query: 884 NIPAKM----AIESIGIHL--------TGFADRID---LLKSGFVDITDYKTGDNP-KKE 927 + + I L G DR+D + ++ I DYK+ Sbjct: 918 EASFGPGQHEQLPPLEIDLTGGKKMFMRGRIDRVDSATIDDRSYLRIVDYKSSARDLDLN 977 Query: 928 TAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + Q+ A++ S+ + A + Y+ + + D L Sbjct: 978 EVYYGLSLQVLTYLDVAMENSSYWLAGEAEPAGVLYVHVHNPMLKLDKDLTDSEIEEDRL 1037 Query: 987 SEKSLKNL 994 + +K L Sbjct: 1038 KQYKMKGL 1045 >gi|56419216|ref|YP_146534.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus HTA426] gi|81347987|sp|Q5L264|ADDB_GEOKA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|56379058|dbj|BAD74966.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus HTA426] Length = 1167 Score = 190 bits (483), Expect = 9e-46, Method: Composition-based stats. Identities = 133/958 (13%), Positives = 263/958 (27%), Gaps = 126/958 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIA 191 L L A+ + L ++I + +L A ++ L AD L Sbjct: 107 LKLFGRAADKHGFIEQLNEMITECKRYCLTPGELRRHAKAFEDGPDQPGRRLLADKLSDV 166 Query: 192 SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + E L + L+ I I G P ++ + Sbjct: 167 ALVYEELERSLIGHYLDSEDYLRLLAEHIPRSSYLRDADIYIDGFHHFAPQEYMIIEQLL 226 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H V +D + T+ Q L + + I + Sbjct: 227 RHCRRVTVCLTIDRPYD-------DGMPDELHLFYLPAQTYRQLRELALSNDIAI---EE 276 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + + R++V ++ + V L EA N R E Sbjct: 277 PIVLSANRRHEDRALVHLEA------------QFHRRPLLPYGAKTDAVHLYEASNRRAE 324 Query: 371 AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426 ++A + + + + ALI R VK FGI + P+ Sbjct: 325 IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFGIPYFMDEKEPMHHHPL 384 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485 ++ + L + + A+ VK L + + A + LE L Sbjct: 385 IELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAADKLENYVLAYGIKGDKW 444 Query: 486 MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + R A N + + + E L + + L + + Sbjct: 445 TNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLRRLERRLRRAEDGRGFC 504 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + ++ + E E+ + L + +E Sbjct: 505 MALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGTESLPL 564 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 E++ II +D + + SRL++ + G N+GV P ++ Sbjct: 565 AEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFVIGANDGVIPAKVKEDG 624 Query: 663 FLSRVMQ---SDLNLKTAEKYIGQAAHD-----FEMANGTRHLIYTRSLREN-NIPTIAS 713 ++ V + +L + A Q +D + +R L T L + + S Sbjct: 625 LMAEVEREQLRELGVALAPGGREQLFYDPFFVYLALVCPSRRLYVTYPLADGEGKALMPS 684 Query: 714 RWLQRLLVLGGTDFFD------------------NLKKRGQCYL---------------- 739 +++L L + Q YL Sbjct: 685 PLIKQLTELFPHAPVHLCGNDPFDAPAEKAEAFVTAPRATQTYLISQLRAWKRNYGIDPL 744 Query: 740 ------------DWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLIND 781 DW ++ + Y L + S S ++Q Sbjct: 745 WWDVYNTFIGHRDWKEQVRHAVSALFYTNGATPLKKQWSQRLYGKKIQASVSRMEQFQKC 804 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEI 831 PYA +A L+L F+ + D G LFH I ++ ++ + + Sbjct: 805 PYAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRLREQHLDWRELSRPDCERL 862 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA- 887 + + I +++ L + + + E S I + + Sbjct: 863 SAEAVERIAPLIQQQVLSSSHRYEYMKRKLKHVVARTTHVLSEHARASGFVPIGLELSFG 922 Query: 888 --------KMAIESIGI-HLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLID 934 + + + L G DR+D +S + I DYK+ + Sbjct: 923 PNGDLPPLRFRLPDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLA 982 Query: 935 PQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q+ + + + A + Y + D + A +L E Sbjct: 983 LQMLTYLDIVLTYAEQLVGQPALPAGVLYFHIHNPIVQAKQWVDDEVEMAKKLLEPFR 1040 >gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] Length = 1018 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 118/1080 (10%), Positives = 294/1080 (27%), Gaps = 191/1080 (17%) Query: 36 YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95 + +P + +++A E+ G+ S I + + + Sbjct: 44 DEGFSPD---RILALTFSEKAAGEMEERIENRIGESSGI--TVSTFHSYCNDLLK----- 93 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 ++L ++ RL+ + D + +++P P L +L + Sbjct: 94 EFSLYAGINQGTRLIS-----QEHSHVWGINNIDSFGFENIAIPNRP---YDLITSLLEG 145 Query: 156 IDIIETEEKKWEDLHALKN---EKYGMWWLL----AADFLKIASKYWTERLVELNASSPV 208 + + ++L ++ L ++ E + N Sbjct: 146 VSQLHDHLVGPQELQEYVKRKLDENIDEQERDDLLKLADLARFYSHYQEYKRDHNFMDYD 205 Query: 209 GYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + R + ++ +++ + A L++ +A+ N V D Sbjct: 206 DMISMVCRLLESNEVVRNQIRNRYDYVLVDEFQDTNYAQLYLINLIADGTNLTCV---AD 262 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + L+ + + R Sbjct: 263 DDQCIYRFRGAYLSNIKQLQD-----------YYASLEKIPLDRNY-------------- 297 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 S+ N + + + + + +++ ++ EA +A ++ ++ Sbjct: 298 -RSSSQIVQLSQQLIATNPEREDKTLHSHNGDGEKIKVVKTPDDTSEANWVADEIQRLIE 356 Query: 384 EN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 E + ++T R ++ L I ++ + L + ++ + Sbjct: 357 EENIAPDEIFVLTRKRADGKKYSDALKGKMIPVEYVGNLQLKNYPIVQEALAYMHIVADP 416 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + + R + +D+ + ++ + Sbjct: 417 FNNGIAFA------------------------RILAREGVSEHDLQKINTMAKKLSRETE 452 Query: 501 NNTHVPHWQSRLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + +D + LV IL + L+ Y+ N + + Sbjct: 453 LEGDGIYSVLQHYLDDVPIIQKALVKSILTRLNELIDYRKNHLPSDTVKYLLSEKTDLYK 512 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETV 618 + +L+S+ + + A A+E+++++ L G+ Sbjct: 513 -----SQLLADTFTSRRNIHILNSLTSMVEDLELVDGGSEFARAVEYLELVFNLDIGDE- 566 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-LSRVMQSDLNLKTA 677 + + +T+ ++ +S+ + + L + P K F + R ++ + Sbjct: 567 --ETSEENTVKVMTIHQSKGKEAKVVFVCDLADRHLPLRFTKKQFRVPRELEKGVQRDVE 624 Query: 678 E---KYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--ASRWLQRLLVL--------- 722 + + + R L T + S ++ +L Sbjct: 625 DKILHLEEERRLAYVAMTRAREKLYLTFPEKYAGNKRGVKPSEFVTQLDYESNPLIEYIE 684 Query: 723 ------------------------------GGTDFFDNLKKRGQCYLDWTRKLDYTT--- 749 G + D Sbjct: 685 TDRLQDTETVVTESPLKKKQDEYLRLMNMYAGQGQMKQALESLVVLTQLKEIEDKGNLAV 744 Query: 750 --------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 ++ + PPL +S S+++Q + P +L + Sbjct: 745 FNIEDFLKTTPRDIEELEALVNEEMPPLVDSDMRFSASKVRQYMECPLKFKYSNVLNIPI 804 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 GT H++ +L + + L +I+D ++ Sbjct: 805 PQK-----TFFQTGTDVHSVFEQLSR-YRMQGKSIDMELANRILDETWDGSVFDSQTHEQ 858 Query: 856 -WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 ++ + E E+ + I V + ++ G DRID G Sbjct: 859 QELDRVRQMLEYWFEFEKSNVNET--IAVEEKFNLKLDGAQF--GGVIDRIDQTPEGEYI 914 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDC 973 + DYKT +P + + D QL+L A++ + V A L Y+ + Sbjct: 915 VIDYKTSKSPLSKN-KMPEDVQLALYCQAVR----ERYGKYPVKAGLMYVNPNIRDLRLM 969 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 N + S L + EIV ++ + F + +Y + EW Sbjct: 970 DVNQSQINS-------VLDGVREIVADIKAED--FEIREEPN---CYFCDYKGIC---EW 1014 >gi|306835515|ref|ZP_07468529.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49726] gi|304568572|gb|EFM44123.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49726] Length = 1059 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 123/993 (12%), Positives = 261/993 (26%), Gaps = 134/993 (13%) Query: 46 SVTIYVPTKRAIQEL----RSEFIEITGKKSTI--LPIIKSLGDVV-----EEKFTADLL 94 V T++A Q+L R + I++ + P ++L ++ + + +L+ Sbjct: 67 EVLGLTFTRKAAQQLEQRIRRQLIQLRDSGLIVPGSPAAEALNNIAPTVATYDSYAGELV 126 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 Y L PV R++ A I + + + L E L L Sbjct: 127 REYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITEV---------LLK 177 Query: 155 IIDIIETEEKKWEDLHALKNE----------------KYGMWWLLAA--DFLKI----AS 192 I ++ K +D+ + +Y L++ Sbjct: 178 ITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQYVPLI 237 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247 + E + R EH +++ + A L+ Sbjct: 238 EELKRTQAEQQVITFGEQMSVAARLAQEHPAVGKQQAQRYRVVMLDEYQDTSYAQRVLLR 297 Query: 248 TV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ V D W T ++ + + +L Sbjct: 298 SLFGGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQADGTPAPKDQLTTSWRNP 357 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 S + + ++ K ++ L + Sbjct: 358 -----------------SGALELANSVAAGVFGGGPRPVDELHAAPHKGEGEIELGYFAS 400 Query: 367 EREEAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 E EE IA LR + + + ++A++ + L + +I+ L Sbjct: 401 EDEEHEFIAQKLRQQWDAREGDGFRAAVLVRTNRQTAAIAAALDAVDVPNEINGLGGLLW 460 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L +L + + D A + P+ G + A+ A + Sbjct: 461 QPEIQDLVALATMLVRPEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWE 520 Query: 484 DIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + MD L++ + A + T E + + + L +T Sbjct: 521 EGMDPEEYLRAQLAQLTAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRT 580 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 S + +D + + + G T F+ I+ Sbjct: 581 YSLSKPLSDLFADIEAIFNIRTEVLARGSAG----------GATHLDKFADIVAGFHGDS 630 Query: 600 A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI------------- 645 ++++++ DG + + + I+ +++ L ++ + Sbjct: 631 LYALLDYLELAREHEDGLGLGEVPASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQA 690 Query: 646 ---------LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + G N+ + A +AA F +A Sbjct: 691 ETFLSKIEKVPGDNDYIEVSPDAVTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTE 750 Query: 697 LIYT-----RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWT 742 T + R +L+RL + + + L Sbjct: 751 STLTVTGSGTNNRTGKAKKGPYEYLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPA 810 Query: 743 RKLD----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL-----KL 793 + D + ++ LI + ++ + +L Sbjct: 811 LEADPDSLAGADAVLAAMEDLPELSHGETFELWEQDVGALIEEYKSLQQPVVDVELPSEL 870 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 D + + T L ++ E P ID Sbjct: 871 TASDMVALGSDPLQFARRQRRPVPFKPNSYAKRGTAFHAWLEERFGSPALLGEEELPGID 930 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 ++ SFL E + + FV P ++ I S + G D + L Sbjct: 931 EPEDFDLEELKESFLNSEWAQR---QPDFVEAPFEITIGSA--VVRGRMDAVFRLADDTW 985 Query: 914 DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + D+KTG PK + QL++ A A + Sbjct: 986 MVVDWKTGRPPKGTAMEAAKI-QLAVYAEAWRR 1017 >gi|50954628|ref|YP_061916.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951110|gb|AAT88811.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1043 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 118/1025 (11%), Positives = 257/1025 (25%), Gaps = 109/1025 (10%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + ++ AL L + + L + R L Sbjct: 45 APGTGKTTALVEALAERVLGRGYAPGEVLALSASRAAATALRDRLALRL---------GV 95 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDL 130 T P+ ++ + + + P + + ++ +A L+ + Sbjct: 96 PTPGPLARTATSLAFQLARERARRTGEEPPRLLTGGEQDRIIAELLA------GQLEDGT 149 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P P L + L ++I L L W AA F+ Sbjct: 150 GPLWPDVLGPEVRSLRGFRTELRELIARCAERGVSPARLSELGTITGREGWRAAAGFIAE 209 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + + + + + AT L+ +A Sbjct: 210 YQSVLDSY--RGRFVDAAELIASAVAIVRDGSPLDCLRAVFVDDLQEATVATVALLRALA 267 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + G ++ D + + + + + + R + Sbjct: 268 S--RGVAIIAFGDPDVASTAFRGAEATALGQLGARLGVP---------------VTRFVL 310 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + + +++ R + +V +I A + E Sbjct: 311 ATAHRQTPVLRELTARMTERIGTAAAGVQRVASAGRGEPERTGGTRPEVVIISAVSTPSE 370 Query: 371 AISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLH 426 A +A LR + A++ + L + S AG L Sbjct: 371 AARLARRLRERRLLDGVPWGEMAVVVRSGAHIPGLARALAVAEVPTKTSIAGRALRDVFA 430 Query: 427 SSIL--TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L + + A L+ P R E +A GN+ + D Sbjct: 431 ARQLITLAGIEVGALELTPERAAELLLGPFGGLDSISLRRLRLALRQEELASDGNRAADD 490 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + P + + A L + + T T + Sbjct: 491 L-------------LVEALADPARLATIDSSPARRAARLAETLRSGREKAATGSTIEELL 537 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S + + + + +L T + F + Sbjct: 538 WHAWERSGLARRWMEQSERSGIVADEANRHLDGVVALFTAARRFVERFPERPASDFV--- 594 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++++ + +T+ + + + + + F+ + + L E VWP + L Sbjct: 595 -VELLGADVPEDTLAAQTA-GDAVLVCTSSATIGREFEVVAVARLQESVWPNLRLRGSLL 652 Query: 665 SRVMQSDLNLKTAEKYIGQAA---------HDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + Q A ++ ++ T ++ ++ P+ R Sbjct: 653 HPQELGSALDGRKTETEDQRAQVLGDELRMFALAVSRARGQVLLTATVNDDEQPSPFLRL 712 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-------------------------- 749 L D L RG R + Sbjct: 713 AGELAAPDTEDSIHPLSLRGMVGRLRRRLVTTGAPEAAAALARLADAGVEGADPADWYGL 772 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 +P + P S S + P A + + G Sbjct: 773 AEPTTEEPLVDLTDPEAGVRLSPSRLGTFEKSPLAWFVEEMAASPSSLT-------AGIG 825 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 T+ H ++ E + ++ + FE + R L +S + Sbjct: 826 TVVHAVMEEASATGEFGVDALWAGIEQRWAELAFESPWVEERERRRTRGLVGGVSDYLRD 885 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKET 928 E ++ + ++ + + G DR++ G V + D KTG P Sbjct: 886 FE---RAGGRLLGSEGEFELRLGRA--RIGGKIDRVEATPDGTVVLVDLKTGRTVPSAAE 940 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL AL+ G+ + R + + + + + E E Sbjct: 941 TASHA--QLGAYQLALEHGAIEEAGERPPGGAKLLFVAKGVRGKPYRELVQDRVDAEGLE 998 Query: 989 KSLKN 993 + + Sbjct: 999 RLKQR 1003 >gi|326202080|ref|ZP_08191950.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM 2782] gi|325987875|gb|EGD48701.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM 2782] Length = 1148 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 112/935 (11%), Positives = 248/935 (26%), Gaps = 133/935 (14%) Query: 147 WLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L+ +I ++ + + L L + Y + +K+ + L Sbjct: 117 GFVNTLSTLITELKRYNVRADSFDEVLEGLTEDNYLLH---KLKEIKLIYSEFDNMLESR 173 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + ++ L+ ++ + +K I I G G P ++S + + Sbjct: 174 YRDT--DDELTLLASKLDSTEMYSKAEIWIDGFAGFTPQEVEVISKLIQQTENVYITMCT 231 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + S K + + + +++ Sbjct: 232 DVLFDEMQSGSTDVFAAVKKSC------------KKFVSIAEASDVKILPPVGLNSANLP 279 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA-IALRMS 381 R + + Q+ +D+ L E+ N E A +R Sbjct: 280 RFKESRELQSQEANYFAYPYRV-------YQQPTTDIELFESVNIYAEIEECARDIIRQC 332 Query: 382 LDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 D K + T + + ++ I I + ++ ++ S+L Sbjct: 333 RDNDMQFKDITVATRNLTGYENLIEVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFT 392 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + + A+ +K L L + + Sbjct: 393 ENWSYEAVFRYLKSGLTGIEDTRIDLLENYVLACGIRGSRWTQEAEWNTSIEF-RPDDKQ 451 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 N + + E +E + + T + T + + + + + Sbjct: 452 SPENDEMLLQVNVTRNEVREPLLRFRNRTKGRRTA-EDFCTGIYEYLVEIGVEERIRDYI 510 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + +++ L +F +++E ++ ++ + + Sbjct: 511 DSFTQNG----QLRLAGEYQQVWNILMDVFDQVVEVMGDETFGIEKFANVFKIGLAEYKI 566 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------D 671 + I R L + G N+GV+P LS + + Sbjct: 567 SSIPASLDQVLIGSIEHLRSHEIKALYILGTNDGVFPSAGISEGVLSDKDRDVLNKKGIE 626 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLL--------- 720 L T K + + ++ L + S + R+ Sbjct: 627 LASDTKSKAFDELYLIYRTLTMPKNFLRISWPIADHEGRTMRPSTIISRMRKIFPNITEK 686 Query: 721 -VLGGTDFFDNLK------------------------KRGQCYLDWTRKLDYTTKQ---- 751 + +N + G + + + Sbjct: 687 NNILKPAGVNNNIDLIASPVPSFNQLVSILRQKNEGIEPGHMWKELFAWFSAQEEWKQKC 746 Query: 752 -----PHYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHF 799 R P +A+ R + S +++ + P+A Y + L Sbjct: 747 DAMINALKYRNIAVPVDKAKIRELYGKNPYFTVSRLEKYTSCPFAFYVQYGLGARERK-- 804 Query: 800 KKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK-----EN 847 D GT H +I K + + + +I+D Sbjct: 805 IYRLSPPDVGTFMHAVIERFSKMVDENNYSWREIDRQWCSDEVSKIVDELLASMKNTILG 864 Query: 848 LPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIESIG- 895 + ++ +L E +SS E + + + ++S Sbjct: 865 GSKRFKAL-AVRLKRVVTRAVWLIAEHIRRSSFEPVGYEVEFGEGGAYPPIVIELDSGEK 923 Query: 896 IHLTGFADRIDLL--KSGF-VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 I L G DRID L +G + I DYK+G + K + QL AL S + Sbjct: 924 IKLVGRIDRIDTLSTDNGKYLRIVDYKSGDKDFKLSDVYYGLQMQLITYLDALWESSENS 983 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + + Y R+ D + S +E+ Sbjct: 984 GEKALPGGILYFRVD-----DPMIKGTGSSSPEEI 1013 >gi|145294938|ref|YP_001137759.1| hypothetical protein cgR_0884 [Corynebacterium glutamicum R] gi|140844858|dbj|BAF53857.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1016 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 123/1056 (11%), Positives = 283/1056 (26%), Gaps = 171/1056 (16%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83 ++ +V+ +S+ + +K A LR E E + + P+++S+ Sbjct: 53 VSSAVVDTVLERIRQGWEPSSMLVVATSKEAASRLRQEISESVAQMDYVSEGPLVRSVHS 112 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 V L ++ ++ + L+ D Sbjct: 113 VAFALIRDASDDDVRL---ITGAEQDAVIRELLRGHA--------DDGRGGWPQEQREGL 161 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + A+ L D + ++L L W+ A +FL+ + + + Sbjct: 162 RMVGFARQLRDFLLRAVERGVGPDELVELGERFERANWVAAGEFLRE----YKQVMKLSG 217 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 A S + A + I + P +A L+S P + + D Sbjct: 218 AHSFSAS-ELVTEALRGPEPSVKYRGVFIDDAQHLDPKSAELVSRF--FPEAELAVVAGD 274 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + S + Sbjct: 275 PQQSVFRFRGANPDFLTKLSVD-------------------------------------- 296 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + ++ + + + LI+ + E IA+ +R + Sbjct: 297 -HEVVLKGRRKASTSIVVAETESAHADLLADTVRRAHLIDGRSWSE----IAVIVRSA-- 349 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442 + ++ L G+ + IS + L+ + + L A+ + + Sbjct: 350 -------------GMIAPIRRTLLAAGVPVHISPTDVVLAEQRIVAAMILGLRALTESLN 396 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + L+ P+ L R L ++ I L+SL+ + A Sbjct: 397 AIELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLEESDAEM--- 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 L++ + L + + L + + + S +D + Sbjct: 452 ------LGFLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISL 505 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + +L + + + + + I + + + + Sbjct: 506 RGGASGSQADRDLDAMMALFDAAGDYVERYPSAGVRSF----ILHISEQELPTGMRERRG 561 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK------- 675 + +L + + +I+ + EG WP L + DL + Sbjct: 562 AIPEAVEVLTAHATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDLMDEGIDPDII 621 Query: 676 ---TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL---------LV 721 +AE+ + + + + ++ +++ SR+L+ L Sbjct: 622 ISRSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEE 681 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756 + + R +L P R Sbjct: 682 ASAIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWT 741 Query: 757 ----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P L + S S I+QL+N P R + ++ P +GTL Sbjct: 742 NLRTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDR------LDSEEETPIAMLKGTLV 795 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + + +++ ++ + N+P F +I + Sbjct: 796 HAFAEAVAGGV------DAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLK 849 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 ++ ++ + + I+ + + G DR++ KSG + + D+KTG Sbjct: 850 TSRADFTEVGTEMDVSVTIDD-SVSIRGRMDRLERNKSGELVVVDFKTGKTQIAAK-DMG 907 Query: 933 IDPQLSLEAAALKAGSF---------SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 PQL AL G V + + + Sbjct: 908 DHPQLFAYQLALSKGVLHGDKISDPNPGETPDPVGGGLLVY--PATDTKAVGQRMQDPKT 965 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 E + L + L+ + + + + Sbjct: 966 QEDLDDFAAMLPGLAEHLRGPNL--FARVNPTCSTC 999 >gi|313622691|gb|EFR93053.1| ATP-dependent nuclease subunit B [Listeria innocua FSL J1-023] Length = 1157 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 121/951 (12%), Positives = 277/951 (29%), Gaps = 134/951 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 LA + ++ EE ++L + + + + E L Sbjct: 116 GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + + III G T ++ + + V L+ Sbjct: 173 ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 I + E S S+ ++L ++ I+ E K L Sbjct: 231 -PEIHKGLEEFSMFKASTEAY------FALLEMAKLNKIQVEPEKTLIENKRANSDSLAF 283 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384 ++ ++ NK + + +D+ + +A+N R E +A +R Sbjct: 284 LANAW-------------GGNKYSSYEGGVNDLTIHQANNRRAEMEGVAREIRQLTLNGY 330 Query: 385 NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + A++T + + + + F I I I ++ + S ++AI + Sbjct: 331 RYRDIAILTRNISDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390 Query: 444 MAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 I VK + R + LE L + + + + R + Sbjct: 391 EPIFQAVKTEFFFDVAENTTIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554 +P ++E+ ++ + + PL T + N + + + Sbjct: 451 NVLP-----QTDEELATQSVINEMRKLIVEPLSTLENNITNAKTGIEFAMALYHYLEQVK 505 Query: 555 -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + V + E+ ++S L + +E + + + +IIT + Sbjct: 506 AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDINSFSEIITTGL 565 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D + + ++LLN + G+N+GV P LS + L Sbjct: 566 DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625 Query: 674 L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711 + +A+ IG+ + L + + + Sbjct: 626 VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFK 685 Query: 712 ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747 S +L +L + ++ + T +L + Sbjct: 686 NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFEN 745 Query: 748 TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792 + + K+ E + S S +++ + + +A+ LK Sbjct: 746 SEESEAAKQVLSSLYYENNTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842 L+ D G +FH + + + ++ L + Sbjct: 806 LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863 Query: 843 FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897 + E L ++ +I + +E+ S+ I + + + + + Sbjct: 864 IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923 Query: 898 --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 L G DRID + + I DYK+ + + Q+ + Sbjct: 924 LQSDSELLLQGRIDRIDAAEQDNRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983 Query: 946 AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + I + A + Y + ++ + + + +K LI Sbjct: 984 TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034 >gi|77164501|ref|YP_343026.1| hypothetical protein Noc_0987 [Nitrosococcus oceani ATCC 19707] gi|76882815|gb|ABA57496.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosococcus oceani ATCC 19707] Length = 911 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 112/712 (15%), Positives = 208/712 (29%), Gaps = 80/712 (11%) Query: 360 ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLEL------------ 406 + + EE A R L+ +K +I + R + Sbjct: 225 RRVALADTIEEITVAARWARHRLEHSPGEKIGVIVPELEFLRVQVARIFDDILHPEAVLP 284 Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 R ++S PL+ +L + + ++ P E Sbjct: 285 GRGRIERAYNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSH 344 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 L + + + + + EED Sbjct: 345 RAL--------------------LDAYLRKTREERVSLERLWKAAITAREEDA------N 378 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 L +K +S S W + LQ + R L + ++ Sbjct: 379 HRCPALGERLQQFKVEVDSLPARQPPSGWAQSFTCWLQLLGWPGERPLDSEEYQAVSAWH 438 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 S+ S I L+ +P+ + ++G LE+ FD Sbjct: 439 KSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLFQPENPIVP-VQVMGVLEAAGEQFDAA 497 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTR 701 + GL++G+WP NP L +Q L +AE+ + E +I + Sbjct: 498 WMLGLHDGIWPTAPRPNPLLPIELQRHYRLPHASAERELAYTRVVTERLLASAPVVIVSH 557 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 RE + S + L + + + + ++ T + + P Sbjct: 558 PRREGDRDLRPSPLIAELASVLPE------RLQLASVESYVNEIQQTGRMETLVDAQGPP 611 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 +K P+ +A L + + D+G L H + L + Sbjct: 612 LEAGAQVGGGTGLLKAQAACPFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYLWE 671 Query: 822 KRINKNTPEI--NHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEE----- 872 K N++T + +I ++ I+ F I LE Sbjct: 672 KLQNQHTLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLE 731 Query: 873 --KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETA 929 K + + + G+ L ADRID L+SG I DYKTG + P+ Sbjct: 732 RDKQRPPFAVLHQERSQ--PLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFG 789 Query: 930 QKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-----KKK 980 ++ +PQL L A L A F+Q+ + + Y+ + ++ Sbjct: 790 ERPEEPQLPLYCIAHEAPLAAVLFAQVRRGE---MKYLGVTKEEGSMPEVAVFTRVAGGL 846 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 S +EL + + L + + + + S L R+ E Sbjct: 847 DSWEELLARWFQVLHALAVEVVE---GYAAVAPRDANSCDYCALPGLCRIKE 895 >gi|16801432|ref|NP_471700.1| hypothetical protein lin2369 [Listeria innocua Clip11262] gi|81525574|sp|Q929A8|ADDB_LISIN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|16414892|emb|CAC97596.1| addB [Listeria innocua Clip11262] Length = 1157 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 120/951 (12%), Positives = 278/951 (29%), Gaps = 134/951 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 LA + ++ EE ++L + + + + E L Sbjct: 116 GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + + III G T ++ + + V L+ Sbjct: 173 ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 I + + S S+ ++L ++ I+ E K L Sbjct: 231 -PEIHKGLEDFSMFKASTEAY------FALLEMAKLNKIQVEPEKILLENKRANSDSLAF 283 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384 ++ ++ +NK + + +D+ + +A+N R E +A +R Sbjct: 284 LANAW-------------GDNKYSSYEGGANDLTIHQANNRRAEMEGVAREIRQLALNGY 330 Query: 385 NKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + A++T + + + + F I I I ++ + S ++AI + Sbjct: 331 RYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390 Query: 444 MAIATLVKHPLAKF-GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 I VK + R + LE L + + + + R + Sbjct: 391 EPIFQAVKTEFFFDVAENATIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554 +P ++E+ ++ + + PL T + N + + Sbjct: 451 NVLP-----QTDEELATQSVINEMRNLIVEPLSTLENNITKAKTGIEFAMALYHYLEQVK 505 Query: 555 -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + V + E+ ++S L + +E + + + +IIT + Sbjct: 506 AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDVNSFSEIITTGL 565 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D + + ++LLN + G+N+GV P LS + L Sbjct: 566 DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625 Query: 674 L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711 + +A+ IG+ + L + + + Sbjct: 626 VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFK 685 Query: 712 ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747 S +L +L + ++ + T +L + Sbjct: 686 NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFED 745 Query: 748 TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792 + + K+ E + + S S +++ + + +A+ LK Sbjct: 746 SKESEAAKQVLSSLYYENKTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842 L+ D G +FH + + + ++ L + Sbjct: 806 LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863 Query: 843 FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897 + E L ++ +I + +E+ S+ I + + + + + Sbjct: 864 IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923 Query: 898 --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 L G DRID + + I DYK+ + + Q+ + Sbjct: 924 LQSDSELLLQGRIDRIDAAEQDDRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983 Query: 946 AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + I + A + Y + ++ + + + +K LI Sbjct: 984 TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034 >gi|254434433|ref|ZP_05047941.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27] gi|207090766|gb|EDZ68037.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27] Length = 904 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 112/712 (15%), Positives = 208/712 (29%), Gaps = 80/712 (11%) Query: 360 ALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLEL------------ 406 + + EE A R L+ +K +I + R + Sbjct: 218 RRVALADTIEEITVAARWARHRLEHSPGEKIGVIVPELEFLRVQVARIFDDILHPEAVLP 277 Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 R ++S PL+ +L + + ++ P E Sbjct: 278 GRGRIERAYNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSH 337 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 L + + + + + EED Sbjct: 338 RAL--------------------LDAYLRKTREERVSLERLWKAAITAREEDA------N 371 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 L +K +S S W + LQ + R L + ++ Sbjct: 372 HRCPALGERLQQFKVEVDSLPARQPPSGWAQSFTCWLQLLGWPGERPLDSEEYQAVSAWH 431 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 S+ S I L+ +P+ + ++G LE+ FD Sbjct: 432 KSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLFQPENPIVP-VQVMGVLEAAGEQFDAA 490 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTR 701 + GL++G+WP NP L +Q L +AE+ + E +I + Sbjct: 491 WMLGLHDGIWPTAPRPNPLLPIELQRHYRLPHASAERELAYTRVVTERLLASAPVVIVSH 550 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 RE + S + L + + + + ++ T + + P Sbjct: 551 PRREGDRDLRPSPLIAELASVLPE------RLQLASVESYVNEIQQTGRMETLVDAQGPP 604 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 +K P+ +A L + + D+G L H + L + Sbjct: 605 LEAGAQVGGGTGLLKAQAACPFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYLWE 664 Query: 822 KRINKNTPEI--NHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEE----- 872 K N++T + +I ++ I+ F I LE Sbjct: 665 KLQNQHTLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLE 724 Query: 873 --KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETA 929 K + + + G+ L ADRID L+SG I DYKTG + P+ Sbjct: 725 RDKQRPPFAVLHQERSQ--PLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFG 782 Query: 930 QKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-----KKK 980 ++ +PQL L A L A F+Q+ + + Y+ + ++ Sbjct: 783 ERPEEPQLPLYCIAHEAPLAAVLFAQVRRGE---MKYLGVTKEEGSMPEVAVFTRVAGGL 839 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 S +EL + + L + + + + S L R+ E Sbjct: 840 DSWEELLARWFQVLHALAVEVVE---GYAAVAPRDANSCDYCALPGLCRIKE 888 >gi|159039659|ref|YP_001538912.1| UvrD/REP helicase [Salinispora arenicola CNS-205] gi|157918494|gb|ABV99921.1| UvrD/REP helicase [Salinispora arenicola CNS-205] Length = 1096 Score = 190 bits (481), Expect = 2e-45, Method: Composition-based stats. Identities = 120/1048 (11%), Positives = 250/1048 (23%), Gaps = 135/1048 (12%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVE 86 LVE + V + ++R LR + P++++ Sbjct: 36 LVEAVAARVAEGVDPERVLVLTFSRRQAASLRQRIEARIAGDGHRVLREPLVRTFPAYAF 95 Query: 87 EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 ++ ++ L + L+ + + D P Sbjct: 96 GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDLVGEE-----PDNDPVGWPEDLRPALRT 150 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203 A L D++ +L L W AA FL+ R V Sbjct: 151 RAFAAQLRDLLMRAAERGIGPVELARLGERLGRADWPAAARFLREYVAVLALRDVGNRGS 210 Query: 204 -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 A P + + + + + + PA L++TVA + Sbjct: 211 IAYDPAELVRSATGMLLDDPALLAAERRRLAHVYVDEYADTDPAQQDLLATVAGDGKALV 270 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 VL D T + ++ + ++ ++ Sbjct: 271 VLA--DPDSSTYAFRGADPGGVVTFPHRFRTASGAPAAQVVFTTSYRAAPRLLEAHARLA 328 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + G P + + EA +A A Sbjct: 329 RRLRG-------------------PATHRRLRPLPTAATGTAEVRTFRSAASEAAWLAHA 369 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTS 432 LR + + A + R L R + +PL + L Sbjct: 370 LRAAHLLDGVPWAEMAVLVRSTARQLPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPLLL 429 Query: 433 LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 LL D A L+ PL R + L ++AL + Sbjct: 430 LLRCALAPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRVMALAAGDRRPSGELITE 487 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-NSTCGNLS 549 + D + ++ + L + + + Sbjct: 488 ALRDPAELAGIDRRWAEPAQTVAGLLAVARETAARPGVTAEEVLWAVWRASGLAELWSAA 547 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 ++ +L ++ F+ + + ++ Sbjct: 548 LARTPATAGEGDVARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARVE----VFLDHVL 603 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + + +T+ P ++ + +L ++ L +D + + G+ EGVWP + L Sbjct: 604 GQDLPADTLAPTADRGDAVRLLTAHAAKGLEWDVVAVAGVQEGVWPDLRLRGSLLGSERL 663 Query: 670 SDL-------------------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 D+ L E+ + A + + ++ ++ Sbjct: 664 VDVLAGRSAGAGPRASVVGQTSALLDEERRLFHVAVTRARRRLLVSAVASATVGGDDHDE 723 Query: 711 IASRWLQRL-------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 SR+L L + R +L Sbjct: 724 QPSRFLHELGVADPPPAAAAGPDGDAASDEARTAPLPLSRPPRALTLASLVAELRAAVTD 783 Query: 752 PHYKRPKPFPPL---------------------------------EAQPRTYSFSEIKQL 778 P + + +P + S ++ Sbjct: 784 PASPALRRRAAAAELARLAAEGVAGAHPSDWWGLRPLSDDRPLVADGEPVRVTPSGMESA 843 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + R G L H + + L+ + Sbjct: 844 LRCSLRWLLERHGGSAPAGA------AQGVGNLVHAA-----AMLAESASSDRRALLDYV 892 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 E + R + L + I ++ + L Sbjct: 893 ASRFDAIELAARWMVGPERARAEAMVDKLLRWLATNPRRLLAIEHEFAVRLNDPRHPVDL 952 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G DR+++ G + + D KTG + A PQL AA++AG+F++ + Sbjct: 953 VGRVDRLEVDADGRLVVVDLKTGKSTAVTAADLAEHPQLGAYQAAVEAGAFAEFGA-ESG 1011 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADEL 986 ++L K + Sbjct: 1012 GAALVQLGTAAKDAREQSQPPAGEGPAA 1039 >gi|317497578|ref|ZP_07955896.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 5_1_63FAA] gi|316895137|gb|EFV17301.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 5_1_63FAA] Length = 1126 Score = 190 bits (481), Expect = 2e-45, Method: Composition-based stats. Identities = 104/921 (11%), Positives = 242/921 (26%), Gaps = 125/921 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L + + EDL + + + + + + + + + E Sbjct: 125 GFIDELKSFFAEVYQYDVSMEDLKKITDGMKEEGLRSKMEDILLVMENFEDYIKERYLI- 183 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ + E K + G TG P +++ + V LD Sbjct: 184 -SEQLLDVLAQKVERSEKLKNATFYLDGFTGFTPIQRKVLEKLLKIGENVYVGLTLDGRY 242 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-EDVKRLGNVSNEMYGRSM 325 + + + + Y L KL D+ + + R + Sbjct: 243 VRSQYREYELFAMSKKEK---------YELIKLAQDAGTPVMPDIICWPDERDSKELRHL 293 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 +I + D+ + N R+E+ ++A + + E Sbjct: 294 ---------------EQNIERYPYEIYKDEPEDIKIRCFMNPRQESRTVANEIERFVREE 338 Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 K ++TAD + + I + L L S+L I K Sbjct: 339 GYRYKDIVVLTADLDSYQNELEKSFDDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQKDF 398 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + + +K + F E + N L S ++ Sbjct: 399 SYDMVFRYLKSGFSNFTMEEADFLENYVLACGIRGFARWNRPFASKLFS--------DED 450 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + R EE L L L+ + + ++ Sbjct: 451 VGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGKMVKKQEMFEASG 510 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + + + + L ++ E K + +++ ++ ++ + Sbjct: 511 DLIAAAT--------YAKVYEQVIDLLEQMAEILGEEKFSYDDFLSVLESGLEEMQIGVI 562 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKT 676 + I +R L G+NEGV P ++ + L L Sbjct: 563 PPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAANGGGGVVNDHQREVLETYGINLAP 622 Query: 677 AEKYIGQAAHDFEMANGTR---HLIYTRSLRE-NNIPTIASRWLQRLLVL-------GGT 725 K + ++ L + + + S +++R+ + Sbjct: 623 GIKQSAYMEQFYLYLTVSKPTDRLYLSYRMMDAAGNNNRPSYFIERIQRIFPKLKVTMQE 682 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 + R + L P+ ++ Sbjct: 683 EEVQTGYTREEALDQMILCLQEMEFDERDDDPEKMKWMQTLYHALKELEPVGDYVDARFY 742 Query: 771 ----------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 S + +++ ++ + + L+L + TD Sbjct: 743 TNQALPLSKELIHDLYGDTISGSVTRMEKFAGCAFSHFMQYGLRLRKR--LVHEILPTDM 800 Query: 809 GTLFHNIITELIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRHLFHK 862 G +FH + + K+ K + + ++Q + ++ H + + Sbjct: 801 GKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQAVTDIQKELFESSHRNEYVLERMKR 860 Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAI---ESIGIHLTGFADRIDLLKS 910 IS + + + I M + + +G DR+D ++ Sbjct: 861 ISKRAVWAMEQHIKRGDFTPEEYEIAFGEENHLDSMTFALEDGEKMFFSGVVDRMDSIED 920 Query: 911 GF---VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965 + I DYK+G + QL + A ++ A +FY + Sbjct: 921 DENKYLKIIDYKSGKQKFDFAKIFHGLQMQLIIYMNAMMELYEKKTGKRVYPAGMFYFHM 980 Query: 966 KQKFKIDCITNDKKKYSADEL 986 N+ + +L Sbjct: 981 DDPIVNVEHENEAEDKILKDL 1001 >gi|227502912|ref|ZP_03932961.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] gi|227076334|gb|EEI14297.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] Length = 1059 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 132/1016 (12%), Positives = 265/1016 (26%), Gaps = 180/1016 (17%) Query: 46 SVTIYVPTKRAIQEL----RSEFIEITGKKSTI--LPIIKSLGDVV-----EEKFTADLL 94 V T++A Q+L R + I++ + P ++L ++ + + +L+ Sbjct: 67 EVLGLTFTRKAAQQLEQRIRRQLIQLRDSGLIVPGSPAAEALNNIAPTVATYDSYAGELV 126 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 Y L PV R++ A I + + + L E L L Sbjct: 127 REYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITEV---------LLK 177 Query: 155 IIDIIETEEKKWEDLHALKNE----------------KYGMWWLLAA--DFLKI----AS 192 I ++ K +D+ + +Y L++ Sbjct: 178 ITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQYVPLI 237 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247 + E + R EH +++ + A L+ Sbjct: 238 EELKRTQAEQQVITFGEQMSVAARLAQEHPAVGKQQAQRYRVVMLDEYQDTSYAQRVLLR 297 Query: 248 TV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ++ V D W T ++ + + +L Sbjct: 298 SLFGGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQADGTPAPKDQLTTSWRNP 357 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 S + + ++ K ++ L + Sbjct: 358 -----------------SGALELANSVAAGVFGGGPRPVDELHAAPHKGEGEIELGYFAS 400 Query: 367 EREEAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 E EE IA L+ + + + ++A++ + L + +I+ L Sbjct: 401 EDEEHEFIAQKLKQQWDAREGDGFRAAVLVRTNRQTAAIAAALDAVDVPNEINGLGGLLW 460 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L +L + + D A + P+ G + A+ A + Sbjct: 461 QPEIQDLVALATMLVRPEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWE 520 Query: 484 DIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + MD L++ + A + T E + + + L +T Sbjct: 521 EGMDPEEYLRAQLAQLTAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRT 580 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 S + +D + + + G T F+ I+ Sbjct: 581 YSLSKPLSDLFADIEAIFNIRTEVLARGSAG----------GATHLDKFADIVAGFHGDS 630 Query: 600 A-NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL------------ 646 ++++++ DG + + + I+ +++ L ++ + + Sbjct: 631 LYALLDYLELAREHEDGLELGEVPASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQA 690 Query: 647 ----------GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 G N+ + A +AA F +A Sbjct: 691 ETFLSKIEKVPGDNDYIEVSPDAVTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTE 750 Query: 697 LIYT-----RSLRENNIPTIASRWLQRLL--------------------VLGGTDFFDNL 731 T + R +L+RL Sbjct: 751 STLTVTGSGTNNRTGKAKKGPYEYLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPA 810 Query: 732 KKRGQCYLDWTRKL---------------------DYTTKQPHYKRPKPFPPLEAQPRTY 770 + L + D YK + P Sbjct: 811 LEADPDSLAGADAVLAAMEDLPELSHGETFELWEQDAGALIEEYKSLQQPVVDVELPSEL 870 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + S++ L +DP ARR + RGT FH + E E Sbjct: 871 TASDMVALGSDPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEERFGSPALLGEEE 925 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + P ID ++ SFL E + + FV P ++ Sbjct: 926 L------------------PGIDEPEDFDLEELKESFLNSEWAQR---QPDFVEAPFEIT 964 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 I S + G D + L + D+KTG PK + QL++ A A + Sbjct: 965 IGSA--VVRGRMDAVFRLADDTWMVVDWKTGRPPKGTAMEAAKI-QLAVYAEAWRR 1017 >gi|270289912|ref|ZP_06196138.1| ATP-dependent helicase/deoxyribonuclease subunit B [Pediococcus acidilactici 7_4] gi|270281449|gb|EFA27281.1| ATP-dependent helicase/deoxyribonuclease subunit B [Pediococcus acidilactici 7_4] Length = 1187 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 119/1068 (11%), Positives = 291/1068 (27%), Gaps = 169/1068 (15%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTK---RAIQELRSEFIEIT 68 S + ++ + R VP ++ +L + E + Sbjct: 9 PASVDHLDAVAETIIELQQQQKQRKIYY----------LVPNHIKFQSEIQLLQKLREKS 58 Query: 69 GK-KSTILP---IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 I S+ + + Y P ++N + L R+I+ +++L Sbjct: 59 DSAGPVFAQKDIQILSISRLAWFFLRNSSIYQY---PRLTNSSTSMLLYRIIVEHQDELL 115 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL----HALKNEKYGM- 179 L + + L + + + + E+L L + Sbjct: 116 -------------LFHNIDAQLGLIQEITSQLAEFKQGNVSPENLSQIIDQLAENEDPQL 162 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 + L I + E + + AL A+ M +I+G + Sbjct: 163 DLMAKLHDLNIIYTAYDEAI-QQKFVDSSDILRALTDQLAK--MDLHAQSFVISGFSNFT 219 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 L+ T+ ++ + + KL Sbjct: 220 AEELNLIQTLIKANATVVI----------------DLVMERNPLNEKLSENSLFFENEKL 263 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 ++ + + + + L + N + + V Sbjct: 264 FFKINEWARENGIQVVSPRVVTKKRVNDDLRKLERYWVASTQGQLGL----NGHEQNNSV 319 Query: 360 ALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK-LELTRFGINID 414 ++E ++ E +A A+R + N +++T + + +F I I Sbjct: 320 EVLEFNSRYAEVEHVATAIRQMMTKDDRLNFSDFSVLTRHLSDYDTIIKPIFDQFDIPIF 379 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK----YLSRAKNA 470 + + ++ +L + + + + L+K L + ++ Sbjct: 380 YDMQVAMKNHPLLELINALFDVQKRHFRYEDVMRLLKTGLLRPENDADPDGKDFVKSVQI 439 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS--RLSEEDKELAVLLVDHIL 528 E LR + R + R E K+ V V+ Sbjct: 440 TENYVLRQGIYGSKWLQKAPWQYQRFNDVDMEQQTDEEREINRRINEIKDYVVKTVNPFF 499 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + L + + + D + E+ +T ++ Sbjct: 500 NQLAVAENGAEAAKALYQFLMRNHVDQRLLAWRDQWIEDGNLAKAA-EPEQTWETFVTML 558 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + ++ ++ +I ++ + T + I + ++++ + + G Sbjct: 559 DEFVDILGDQPFDSNNFIGLLNAGFENATYSQIPSTLDQVLISESGMVQMMDRKVVFIIG 618 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTA---------EKYIGQAAH--DFEMANGTRHL 697 + P+ N FLS+ ++ ++ + A E+ + Q + G++ L Sbjct: 619 ATDRAMPEQIQDNDFLSQEGKAQVSDQLADDQFLKMSNERQMRQEPYLNYLTFMIGSQRL 678 Query: 698 IYTRSLRE-NNIPTIASRWLQRLLVLGGTDFF---------------------------- 728 I+T R + S +++R+ + Sbjct: 679 IFTYPKRGNDGTDFKLSPYVERIKAYFEIEVQCLPSRPAVDQPLIQPFIGSKRSTLSHLV 738 Query: 729 -------DNLKKRGQCYLDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQ 766 ++ + + L+ +R P L Sbjct: 739 QYARSMKESKQPADVRWNLIYSILEAGRWHDLTERLMGSLSYKNVPRKLKPDIVTQLYGD 798 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S S++++ + Y+ + + LKL D D G FH + L+K Sbjct: 799 KIYASVSKLEEFFRNEYSYFLKYGLKLQERET--ADLSPADTGQYFHAAMDNLVKVITQA 856 Query: 827 NT---PEINHLMKQIIDSHFEKENLPPHIDII--------WRHLFHKISHSFLE--HEEK 873 + +KQ+ E D R+ + + + ++ Sbjct: 857 DLNFNEVNQTQIKQVTKRVLENMRQDSQFDQFNSTYRMGYLRNQLDRTVETMVTAIFKQL 916 Query: 874 IQSSIEKIFVNIPAK------------MAIES-IGIHLTGFADRIDLLK-SGF--VDITD 917 Q+ + I + +++ G DRID + G + + D Sbjct: 917 AQTRMRPIASEQMFGQIGLKEGLPALNFKVNGKQEVNVRGKIDRIDKINIEGQPYLGVVD 976 Query: 918 YKTGDNP-KKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 YK+ A + Q+ L ++ + ++++ Y Sbjct: 977 YKSSTRKFDFADAYYGLAMQMLLYLDVVQQNRQRIDPHEQARLSSALY 1024 >gi|313617558|gb|EFR89884.1| ATP-dependent nuclease subunit B [Listeria innocua FSL S4-378] Length = 1157 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 120/951 (12%), Positives = 278/951 (29%), Gaps = 134/951 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 LA + ++ EE ++L + + + + E L Sbjct: 116 GFYSELAKLFKEMKQEEISVDELEK-SAANLSTSVSSKVHDISLIYQKYEELLA--GKFL 172 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + + III G T ++ + + V L+ Sbjct: 173 ENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIEKLMQKCDKVTVSLTLNV-- 230 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 I + + S S+ ++L ++ I+ E K L Sbjct: 231 -PEIHKGLEDFSMFKASTEAY------FALLEMAKLNKIQVEPEKILLENKRANSDSLAF 283 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--E 384 ++ ++ +NK + + +D+ + +A+N R E +A +R Sbjct: 284 LANAW-------------GDNKYSSYEGGANDLTIHQANNRRAEMEGVAREIRQLALNGY 330 Query: 385 NKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + A++T + + + + F I I I ++ + S ++AI + Sbjct: 331 RYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKRAMAKHPFIEFIRSSIDAILFNWKY 390 Query: 444 MAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 I VK + R + LE L + + + + R + Sbjct: 391 EPIFQAVKTEFFFDVAGNATIMRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST 450 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT-------- 554 +P ++E+ ++ + + PL T + N + + Sbjct: 451 NVLP-----QTDEELATQSVINEMRNLIVEPLSTLENNITKAKTGIEFAMALYHYLEQVK 505 Query: 555 -KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + V + E+ ++S L + +E + + + +IIT + Sbjct: 506 AVEHLESWRQVAEENGYLELAREHEQAWSSISELLDEFVEVLGEEELDVNSFSEIITTGL 565 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D + + ++LLN + G+N+GV P LS + L Sbjct: 566 DALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDGVMPLRQKDKGILSDQDRDSLR 625 Query: 674 L------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTI-------------- 711 + +A+ IG+ + L + + + Sbjct: 626 VENSNLKPSAKNNIGEEDLLAYKIMSLPSDKLFLSYPAADEEGKVLSXXXYLRKIKGQFK 685 Query: 712 ---ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---------------------DY 747 S +L +L + ++ + T +L + Sbjct: 686 NLNESVYLTDPSLLNDKEQSSYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFED 745 Query: 748 TTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARRILK 792 + + K+ E + + S S +++ + + +A+ LK Sbjct: 746 SKESEAAKQVLSSLYYENKTKPLQETTAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLK 805 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842 L+ D G +FH + + + ++ L + Sbjct: 806 LEER--AHYKLQAVDMGEIFHGAMEWISAELKRTNRDWGNLTEEECRQMAKLAMTFLAPK 863 Query: 843 FEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-- 897 + E L ++ +I + +E+ S+ I + + + + + Sbjct: 864 IQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIP 923 Query: 898 --------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 L G DRID + + I DYK+ + + Q+ + Sbjct: 924 LQSNSELLLQGRIDRIDAAEQDDRTFLRIIDYKSSSHDLALTEVYYGLALQMLTYLDIVV 983 Query: 946 AGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + I + A + Y + ++ + + + +K LI Sbjct: 984 TNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIARELQKSSKMKGLI 1034 >gi|254514375|ref|ZP_05126436.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219676618|gb|EED32983.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 885 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 99/738 (13%), Positives = 227/738 (30%), Gaps = 69/738 (9%) Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 ++S+ LPP + ++ + + ++ E A R L++ Sbjct: 184 ALLSQDDLPPLHQALCEASTSWQRVTLPVQTARHQPIRSFNDPAAELQMAAHWCRQKLEQ 243 Query: 385 --NKKKSALITADRNLARRVKLELTR---------FGINIDISAGIPLSTTLHSSILTSL 433 + + +++ R++ L + + ++ S G L + Sbjct: 244 DPQGRYAVVLSDMHADRDRLEYYLRKEFACLTKNYASLPVNFSTGFTLDRVPLVRDALRI 303 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 + ++++ + K R + D+ ++ Sbjct: 304 FEFGLPEVTVENVISILQSRFIRPLSYRKDKRERCIRRLRELARERIPQRVMRDVLDDLI 363 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 D+ ++ TN S W Sbjct: 364 DKGMGAA-----------------------------PWDAVLQLDTNGRWQRRARPPSQW 394 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L + L +L +++ + +L + E + + L+ Sbjct: 395 LEPFRAILAAWGWSQGAALDSLEYQQALQWQEALDAFATLDLFTGALTFAEAVQSLRELL 454 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + +P+ E + + +LG LE+ L FD + + G++ WP NP+L +Q + Sbjct: 455 SEQQFQPRTEDQA-VQVLGPLETTGLRFDAIWITGMSADRWPAAAQPNPYLPHSLQREQG 513 Query: 674 LKTAEKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 + A+ + A + G + + + + + S + + ++ + Sbjct: 514 MPHADAGWERRWAKARWDQWVAGAGEIQTSYLSQRDGAEALPSPLIAVVPGCVESEDWAM 573 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 ++ W + +P P E + S ++Q P+ +A Sbjct: 574 DRR-------WLAQASTAAFDAVDLKPVPLTEDERAYQGVGASVLEQQSACPFQAFAATR 626 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE---- 844 L+ P ++RGTL H + +L + + ++ I+ + Sbjct: 627 LQAMQTPTLAAGLLPSERGTLLHRALYDLWGSLGDSAGLALIADEALRAAIERAVDYAQG 686 Query: 845 ------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + + + + R + +L E + P + + + L Sbjct: 687 GLLKERLDVVGGDLLSLERQRLDVVLRRWLALERERSDDFAVTGREEPREHQL--GELRL 744 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID L G I DYK+G K ++ PQL L A + K Sbjct: 745 RLRIDRIDQLHDGAKLIIDYKSGAIGSVNKWFEERPSRPQLPLYALLTPPAAGIAYASLK 804 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADEL--SEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 + + ++ I I + +K S +E+ + +TLL + S + Sbjct: 805 PGAEGFRGVGEREFIKGIDSAEKHLSDNEVGGMTALRAHWTRELTLLADEFVAGHSAVDP 864 Query: 1015 SEKSNIQSEYDHLARVAE 1032 + ++ + L R+ E Sbjct: 865 TVEACRYCQRFSLCRLGE 882 >gi|94987516|ref|YP_595449.1| endonuclease [Lawsonia intracellularis PHE/MN1-00] gi|94731765|emb|CAJ55128.1| RecB family exonuclease [Lawsonia intracellularis PHE/MN1-00] Length = 979 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 94/714 (13%), Positives = 208/714 (29%), Gaps = 105/714 (14%) Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL---NAIF 438 ++ + +A++ + + L N +IS G PL+ +L +L ++ Sbjct: 304 HEDIQTSTAIVLTNSKSLLPILHHLP--HKNCNISLGYPLNKSLLFRLLENIFKIRELQQ 361 Query: 439 KLND--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + ++ L++HP +F + + + + + D+ V Sbjct: 362 EDGTIYWKSLLHLIRHPYLRFLKIDGFELYSLLHKLEQWIVNGQKYIDLNMFFREVEY-- 419 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + +LL I + +T T +D+ + Sbjct: 420 ----------EQPHKKYDFSESECLLLKQLIKVTVENCITIDTLAK-------FADFLSI 462 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L + ++ P + + + + ++ LI E Sbjct: 463 LCDFLLQFGYESWQRFPLDAECLFRLVHKVIPALKDNRMAHTVLSWDLLQSMVVALIHDE 522 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 V + + + L +LG LE+RLL+F + L + + P N ++ L ++ L L Sbjct: 523 RVPFEADPITGLQVLGMLETRLLHFSKVFLIDVTDDQLPGNPIRSSLLPDSLRKILGLPN 582 Query: 677 AEKYIGQAAHDFEMANG-TRHLIYTRSL-----RENNIPTIASRWLQRLLVLGGTDFFDN 730 A A+ F + + SR+++ +L + Sbjct: 583 AHDRDVLTAYTFYRLLAGAKEVYLYWQEGIEVSNSFEGKKQKSRFVEEILWE-EEQSIGS 641 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKP--------FPPLEAQPRTYSFSEIKQLINDP 782 G L+ P +R + S +++ + P Sbjct: 642 QITPGDYILNIA----KPEVSPPLRRRRHIIKTPAIQRQLNSILSHPVSATQLDTYLMCP 697 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQII 839 Y R+ + + +D D G L H ++ + K N ++ + Sbjct: 698 LRFYFERVAMVRPVEVVNEDDDPASVGQLLHKVLKVFFMDYVGKECIKEDLSNERLRMLF 757 Query: 840 DSHFEKEN-----LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNIPA--KMAI 891 P ++ K+ FL Q I++ + I Sbjct: 758 KEELLSSGLINSLPPESSMMLSLSGPEKLV-RFL----SRQPDKTKIIYLEKYFQATLQI 812 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----------KKETAQKLIDP------ 935 L G DR+D + V I DYKTG + + D Sbjct: 813 NGNTRVLEGILDRVDKRGNEGVIIFDYKTGRIKNNSDKLWQDESIWSNLESFDLTSCIEH 872 Query: 936 ------------------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 QL + ++ + +I L + + D Sbjct: 873 PEKADELLFTLSEKISTIQLLYYIYLYR-----DATGEEIQDAAFISLGEDGAEYWLMRD 927 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE-KSNIQSEYDHLARV 1030 +++ + L++ + + +R E + +++L +V Sbjct: 928 LAANIKEDIILNKIPKLLKFLLYHME----YRLEIRPHEGRHCNWCSWNNLCKV 977 Score = 85.7 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 72/270 (26%), Gaps = 29/270 (10%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSE 63 + P I F + ++ T L + R + L + Sbjct: 2 QGPPFLIIPWERDFLECLSSIIIKETDG-----------HLDKAAVIFMHDRPRRYLTAY 50 Query: 64 FIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 F + K ILP I ++ ++ L +L + ++ L + Sbjct: 51 FQQHPELSKPCILPYILTIQEL---LSCLYLEQHTSLCYEAGLLDQVDLLFSCVEQLSAL 107 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 + L + LA + + T+ K DL + + Sbjct: 108 NVSLFNLLSKGGEVG-------FFPWGLQLASVFEECFTQGLKPRDLLY-TEGEVAPFGT 159 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGS 238 L + ++L + ++P L + + I +AG + Sbjct: 160 ALLASLGQIFLLYKQKLEQEGMTTPALKAYVLAEQIRQSTFDLPSFLKQKSIFLAGFSTL 219 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + GA + +D + Sbjct: 220 TGTENIIFRYLWE--KGAKICLHVDSSLAD 247 >gi|289435608|ref|YP_003465480.1| hypothetical protein lse_2247 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171852|emb|CBH28398.1| addB [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1157 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 124/967 (12%), Positives = 288/967 (29%), Gaps = 139/967 (14%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE DL + Sbjct: 97 AALDQKEKLKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + L+ + + III G ++ Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIE 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + E S S+ YSL + +I Sbjct: 214 KLMQKCDKLTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E++K L ++ + + Q +++ + +A+N+ Sbjct: 265 EEIKLLLENKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNK 311 Query: 368 REEAISIAIALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I I ++ Sbjct: 312 RAEIEGIAREIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-FPEKYLSRAKNALELVALRGNKNSY 483 + S L+AI + I VK + R + LE L + Sbjct: 372 PFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAENAADMRRKSDILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + + R + ++E+ + ++ + + +TPL T + N Sbjct: 432 WKWEKEGDWIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVTPLSTLEINLAK 486 Query: 544 TCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + ++ + + + E+ ++++L + +E Sbjct: 487 AKTGIELALALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEV 546 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 +++II +D + + ++LL+ + G+N+GV Sbjct: 547 LGEESLELSSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVM 606 Query: 655 PKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN 706 P LS + L +A+ IG+ + L + + + Sbjct: 607 PLRQKDKGILSDQDRESLREQNSSLKPSAKNNIGEEDLLAYKIVSLPSDKLFLSYPVADE 666 Query: 707 NIPT--------------------------------IASRWLQRLLVLGGTD-FFDNLKK 733 SR+++ G + K Sbjct: 667 EGKVLSESNYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYK 726 Query: 734 RGQC-----YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFS 773 RG + + D + + + L + S S Sbjct: 727 RGYPLSNVWWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVS 786 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP---- 829 +++ + + +A+ LKL+ HF+ D G +FH + + ++ N Sbjct: 787 RMEKFFSCEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISEELKRNNLDWGNL 844 Query: 830 ------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEK 880 E+ L + + + E L ++ +I + +E+ S+ Sbjct: 845 TVEECKELAKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRP 904 Query: 881 IFVNIPAKMAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KK 926 + + + + + + L G DRID+ + + I DYK+ + Sbjct: 905 VGLEVDFGLKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLAL 964 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + Q+ + + I + A + Y + + +K+ + +E Sbjct: 965 TEVYYGLALQMLTYLDIVVTNAQKMIGKSAEPAGVLYFHM-----HNQFVQAEKELTEEE 1019 Query: 986 LSEKSLK 992 L+++ K Sbjct: 1020 LAKEIQK 1026 >gi|325963969|ref|YP_004241875.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] gi|323470056|gb|ADX73741.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] Length = 1115 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 135/1096 (12%), Positives = 280/1096 (25%), Gaps = 152/1096 (13%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + ++ A ++ + + + I P++ + LR F + Sbjct: 84 APGTGKTTVLVEAAVSRVFRDGVDPE--------RMLILAPSRLSADALRDRFTARLDRS 135 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + P ++ + P+S+ RLL LI + L Sbjct: 136 LSTTP-ARTWASYAFDVIRRAKAEGI---LPLSSAPRLLSGPEQDLIIKELLEGHRLPGL 191 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + + + D I + EDL L ++ W+ AA Sbjct: 192 ELPWPEDVEGALETRGFRQEVRQLFDRIIESGRTPEDLVRLGHQCGRPDWIAAAALYAEY 251 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 R+ E A P G A + + + I++ + PA L+ Sbjct: 252 RDVLDLRMPE--AFDPAGIITAARQIFQDAPGFLAAERDRLQVILVDDIQEANPAVFELL 309 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 A+ G + + ++ L Sbjct: 310 ---ADVAGGKDCYVAFSPDTVVQGFRGARPDLVAELPRLLSPNS--PVVERPLRYAHRHA 364 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 E + ++ + R + ++ V + Sbjct: 365 PELAEAWLGLAGRISQR---------------AGGQLARRLDKLDGEQPSGAVEAHLVQS 409 Query: 367 EREEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDIS-AGIPLS 422 E +A + + + A+I + + + L+ GI + + A + Sbjct: 410 AVHELRYVAQRILDQHINHGRDLAQLAVIVRNGSQVSEFQRYLSGQGIAVRVPVAESAVR 469 Query: 423 TTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + L A +L+ + E R E + G + Sbjct: 470 DEVAVRPLLDAFAIALDPDLLTPEAAVSLLTSRIGGATSIELRRLRQSLRREELLGGGGR 529 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 S A P S L E + Sbjct: 530 TS-------------DALLVEALLEPGALSTLGIEGRAARRTARMIQAGRTAAAEPGANA 576 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ + + + R +L + + + Sbjct: 577 ESVLWALWNSTGLDRAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAG---- 632 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ + + +T+ + + + +L + + +I+ GL EGVWP + Sbjct: 633 PEQFLEYLLNQELPMDTLAARAQVDDAVELLTPASAAGREWPVVIIPGLQEGVWPNTRLR 692 Query: 661 NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 L + +Q D + + + + R L+ ++ ++ Sbjct: 693 GELLGSTLYSDAVEHGAAYALQRDPLSRLRDIRYDELRSFSTAVSRARELLVCTAVSSDD 752 Query: 708 IPTIASRWLQRLLVLGGTDFFDN--LKKRGQCYLDWTRKLDYTTKQP------------- 752 S +L + L +R +L + Sbjct: 753 --DQPSSFLDYVAPLPPDQDGRPFTAVERPMTLRALVAELRQHAQLDGKETPQAEEAARV 810 Query: 753 ----HYKRPKPFPPLEAQPRTY------------------SFSEIKQLINDPYAVYARRI 790 P S S+++ + P + + Sbjct: 811 LAHLAAAEPPVAGAHPQSWWGLLPLTSSEAVVPPAGTVFVSPSKVETVQKSPLDWFVQAA 870 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 GTL H I EL + PE + + + K+N Sbjct: 871 GGEAATDF------ARSLGTLVHAIAQEL----PEASGPEYVAELVRRWPALGMKDNWEG 920 Query: 851 HIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGI--------HLTGF 901 + + ++ + V ++A+ I + L G Sbjct: 921 ---RLDFQRAEAMVRKLAQYVLLMRSEGRSLVGVEQDFEVALGRIPVDGAGDREAVLRGQ 977 Query: 902 ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFS---QIDCRK- 956 DR++L G + I D KTG P K + PQL AA+ AG F + Sbjct: 978 VDRLELDSEGRLVIVDLKTGKRQPSKGELSRH--PQLGAYQAAVLAGGFGSGMDLPAAPL 1035 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 +L K I ++ + E ++++ + G F + S+ Sbjct: 1036 PGGAVLAQLGTGAKNPAI----QQQDPIDPQENWAMDMVKEAAAVMGGSA-FEARHDPSK 1090 Query: 1017 KSNIQSEYDHLARVAE 1032 S+ H R+ E Sbjct: 1091 SSHGG----HGCRLPE 1102 >gi|300114628|ref|YP_003761203.1| putative DNA repair protein [Nitrosococcus watsonii C-113] gi|299540565|gb|ADJ28882.1| putative DNA repair protein [Nitrosococcus watsonii C-113] Length = 912 Score = 189 bits (479), Expect = 3e-45, Method: Composition-based stats. Identities = 109/680 (16%), Positives = 198/680 (29%), Gaps = 64/680 (9%) Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + L+ + + A I D V R ++S PL+ + +L Sbjct: 257 IIVPELEFLRAQVARIFDDVFHPEAVLPGRGRMERAYNLSLAQPLADSPLVHTALLILEL 316 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ P E L + + Sbjct: 317 SKGELSMAEVGALLRSPFVGAAEQEFSHRAL--------------------LDAYLRKTR 356 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + EED L +K +S S W + Sbjct: 357 EETVSLERLWKAAITAREEDAA-----HHGYPVLGEGLQQFKAEVDSLPARQPPSGWVQS 411 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 LQ + R L + ++ S S I RL+ Sbjct: 412 FTRWLQMLGWPGERPLDSEEYQAVSAWHKSTQSFSSLDRVVPSLKKNAAIGKFRRLLMET 471 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK- 675 +P+ + ++G LE+ FD L GL++G+WP NP L +Q L Sbjct: 472 LFQPENPIVP-VQVMGVLEAAGEQFDAAWLLGLHDGIWPMAPRPNPLLPIDLQRRHRLPH 530 Query: 676 -TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 +AE+ + E +I + RE + S + L + Sbjct: 531 ASAERELAYTRVVTERLLASAPMVIVSHPCREGDKDLRPSPLIAEL------APVPPERL 584 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 + + ++ T + + P +K P+ +A L Sbjct: 585 QLASVDAYVNEIQRTGRMETLVDAQGPPLEAGTQVAGGTGLLKAQAACPFRAFAEYRLGA 644 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI--NHLMKQIIDSHFEKENLPPH 851 + + D+G L H + L +K N++T ++ ++ ++ Sbjct: 645 KRLEEPSVGLEALDQGILIHVALQYLWEKLQNQHTLLSCNAEELQALVAKAAKQAIATQT 704 Query: 852 IDIIWR--HLFHKISHSFLEHEE-------KIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 F I LE K + + + G+ L A Sbjct: 705 AVRPQTFTERFTAIEQERLEQLLLEWLERDKQRPPFAVLHQEKSQ--PLNLGGLSLDTRA 762 Query: 903 DRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKV 957 DRID L+SG I DYKTG + P+ ++ +PQL L L A F+Q+ + Sbjct: 763 DRIDQLESGERVIVDYKTGRSNPRHWFGERPEEPQLPLYCITHKVPLAAVLFAQVRRGET 822 Query: 958 ANLFYIRLKQKFKIDCITN-----DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 Y+ + ++ S +EL + + L + + + + Sbjct: 823 K---YLGVTKEEGSIPEVAIFTRVADGLDSWEELLARWSQVLHALAAEVM---AGYAAVA 876 Query: 1013 RLSEKSNIQSEYDHLARVAE 1032 S L R+ E Sbjct: 877 PRDANSCDYCALPGLCRINE 896 >gi|86742479|ref|YP_482879.1| UvrD/REP helicase [Frankia sp. CcI3] gi|86569341|gb|ABD13150.1| UvrD/REP helicase [Frankia sp. CcI3] Length = 1103 Score = 189 bits (479), Expect = 3e-45, Method: Composition-based stats. Identities = 132/1041 (12%), Positives = 263/1041 (25%), Gaps = 118/1041 (11%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLVE S+ + ++RA ELR G + G Sbjct: 55 ATLVEAVAARIEAGADPRSILVLTFSRRAAGELRERITARLGAEGGAG---GGPGAWTFH 111 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + LL ++ P + RLL R+ + +D P P + Sbjct: 112 AWCLALLRAHERPAPPGGL-RLLSGPEQDSRLRDLIEGSREDGRPVWPE-PLVGCLRTRG 169 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 + + ++ + L L W A+F ++ + Sbjct: 170 FTEEVRALLARAREVGLEPVALAQLARRTGRPDWAALAEFYEMYLDVFGFEGAVDYTDLV 229 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + AE ++G + + + PA RL+ VA + D Sbjct: 230 HRAVVVAESAEGGAWLRGRYRHVFVDEYQDTDPAQERLLEAVAGGGGNLV--VLGDPDQS 287 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + L R S + R Sbjct: 288 IYAFRGAEVAGLLGFPARFPRLD----GEPAPIVALRRCRRMAPAPLAASRHVARR---- 339 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 +P + + + V EA S+A LR EN Sbjct: 340 ----IPAAGLPVAAIRAHRDLVGRADAGAGQVQARTFPGTGAEAESVADLLRREHLENGV 395 Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKL--- 440 A++ R++ L G+ + P++ +++L L Sbjct: 396 AWDAMAVLVRTAERIGRLRRVLAAAGVPVSADGDDLPVAQEPAAALLLLALRCAEDPAGA 455 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 A TL+ PL L AL + + Sbjct: 456 LTVDAARTLLTSPLGG--ADPAGLRALGRALRTLERDAGSEHP--------APSAELLRA 505 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVT 559 HW + + ++ + + L S S+W Sbjct: 506 AVAEPDHWLATIPDDLAGPVRRVGGLLRTAGQALRDSSGAPQDALWALWSASEWPARLRH 565 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +L + + G + A ++ + I G+ +K Sbjct: 566 ASAAGGAAGRAADRDLDAVVALFDAVTRLGQRRGPGGGV---ASLVAELTRQQIAGDVLK 622 Query: 620 PKIE--KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674 P E + + +L ++ L ++ +++ G+ +G WP ++ L + Sbjct: 623 PAGESVRRRGVRLLTAHRAKGLEWEVVVVCGVQDGTWPDLRERHSLLGAEQLDAPSRGGL 682 Query: 675 ---KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 T + + F +A R L+ T + ++ SR+L+ L V + Sbjct: 683 RPPLTRQDLLADERRLFYVALTRARRRLVVTAVNSPEDDGSLPSRFLEELGVAV--EHVP 740 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPH----------------------YKRPKPFPPLEAQP 767 R + L +P RP Sbjct: 741 GRPARPLTLVGLVATLRRLATEPDSSPVMRSAAQARLAALAAARDQAGRPLVPAAHPDTW 800 Query: 768 RTY-------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 S S + + + Sbjct: 801 WGLLDPTTSDVPVVPVAGPIRLSGSSLSSIGACSLRWFLEHEAYA-----VTPASTAQGF 855 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 G + H + E+ R + ++ + + + + Sbjct: 856 GKVVHALADEVTTGRTPADLAALDARLDTVWRQLDFDARWRSDQERAAAREALARFLDWH 915 Query: 869 EHEEKIQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 E + I + + + + L GF DR++L ++G V + D+KTG Sbjct: 916 AAERGRR----VIDAEVRFSCDLRVAGRDVQLRGFIDRLELDEAGRVHVIDFKTGRT-AV 970 Query: 927 ETAQKLIDPQLSLEAAALKAGSF-------------SQIDCRKVANLFYIRLKQKFKIDC 973 A+ PQL A++AG+ + ++L++ Sbjct: 971 APAELATHPQLGSYQLAVRAGALDDVLAAAAPDQPGADQPRAVPGGAELVQLRRDAGAAA 1030 Query: 974 ITNDKKKYSADELSEKSLKNL 994 ++ L Sbjct: 1031 AGPRLPGERPGPPEVQAQSAL 1051 >gi|225020702|ref|ZP_03709894.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC 33806] gi|224946648|gb|EEG27857.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC 33806] Length = 1095 Score = 188 bits (478), Expect = 3e-45, Method: Composition-based stats. Identities = 128/1079 (11%), Positives = 289/1079 (26%), Gaps = 148/1079 (13%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 + +V ++P V T++A Q+L + G+ + I P I +L Sbjct: 47 MAARVVWLVANGLIDPD---QVLGLTFTRKAAQQLGKRINDRLGQLAGI-PDIAALDPSG 102 Query: 86 E---------------EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + F L+ + L PV R++ L I + + +L Sbjct: 103 RLANRLRSAGPTTSTYDAFAGKLVGEFGLLLPVEPSSRIISQTELYRIAVQVVNEYEGEL 162 Query: 131 YPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMW------- 180 + + L L + + ++ E + L Sbjct: 163 SMRHTTGHVVDT--LLTLTAELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKI 220 Query: 181 --WLLAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGP 229 W + L + +K +RL + N + R E+ + Sbjct: 221 LGWQETQFHRIELLPLVTK-LKDRLKDENLVTFGEQMSLAARLAVENPSVGKVLRNRYKV 279 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 +++ + A L+ ++ G V D W T + N ++ Sbjct: 280 VMLDEYQDTSHAQRMLLRSLFA---GGAVTAVGDPMQSIYGWRGATAANLNRFVTDFAID 336 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 PQ + L + + + ++ Sbjct: 337 --PQ------------EPAVKNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLS 382 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLE 405 D+ L +E +A L + +A++ + E Sbjct: 383 SPPSAVAGDIQLGYFPTIADERQFVADTLAELYNNRDTAKPFTAAVLVRQNAHTGPIAKE 442 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 R GI +I L + + ++ + + D A ++ P G + Sbjct: 443 FQRRGIPYEIVGINGLLDVPEVADMVAVAIMLIRPTDSAAALRILGGPAVGLGVRDIQAL 502 Query: 466 RAKNALELVALRGNKNSYDIMD---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + K + + L+ + + +A N E ++ + Sbjct: 503 ARRAGELSGRASSGKTTDSVDPAVKLEEEIAEVLAADAENIVGLTDAIADLGEPEKYSEE 562 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + L + + + + + V E+ +L Sbjct: 563 GYRRLGRLSSQLRRLRQTVAAGSSLPDLFAEIERVMGIRTEVLSRENPRLDGAVGTIHLD 622 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 L + + + +++ R G + +S + IL +++ L ++ Sbjct: 623 KLHQEVANFATIPNTTLSQLLDYFTEARRQESGLELGEVQVRSDRVQILTVHKAKGLEWN 682 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVM----------------------------QSDLNL 674 T+ + N + K A + M ++ L Sbjct: 683 TVCVLHANNRDYDKTRASTWLTNPAMVPSTLRGDAAESGDTVGSPVLDTSWLENRAQLEA 742 Query: 675 KTAEKYIGQ--------AAHDFEMANGTRHLIYTRSLRENNIPT---IASRWLQRLLVLG 723 + A + + + ++ S +L Sbjct: 743 ECAAHIEEFRQSLSEESTRLFYVAVTRAAQRLIVTASALDDNERDIEPCSNFLLMKRNAS 802 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL--IND 781 D + + P PKP ++ + D Sbjct: 803 TDSIVAWHDPAEAAAADTSDGPSEVQQSPIGMFPKPTKTVDLLTGADLVRKAIAQQSAGD 862 Query: 782 PYAVYARRIL-----------------------------KLDFIPHFKKDPDRTDRGTLF 812 P A L +L + Sbjct: 863 PIAFNQDNDLFQLWEKDVTALIEEYQRLQSDIVEVELSPELTATDIVALKQNPEQFARRQ 922 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHE 871 + + + T + L ++ E+ P +D ++ F+ Sbjct: 923 RRPVPFKPNRYAKRGTEFHSWLEQRFGAPTLLDESELPGMDEEITPGQLQELKDKFVA-- 980 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + +FV P +++I+ GI + G D + +SG I D+KTG P + + Sbjct: 981 -GQFADRTPMFVEQPFEVSID--GIVIRGRMDAVFRDESG-WHIVDWKTGQLPSRADMRY 1036 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 L+ QL++ A ID ++ A+ +Y+R + D + ++++ L+ + Sbjct: 1037 LM-MQLAVYRIAWAQ--LQGIDPDEIHASFYYVRYDKLSSADNLPSEREIAETLRLAAQ 1092 >gi|138894262|ref|YP_001124715.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus thermodenitrificans NG80-2] gi|196248139|ref|ZP_03146841.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16] gi|134265775|gb|ABO65970.1| ATP-dependent deoxyribonuclease, subunit B [Geobacillus thermodenitrificans NG80-2] gi|196212923|gb|EDY07680.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16] Length = 1172 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 120/957 (12%), Positives = 248/957 (25%), Gaps = 125/957 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191 L L A+ + L ++I + ++L L++ L AD L Sbjct: 112 LKLFGRAADKSGFVEQLHEMIAECKRYCLTPDELRRHAGVLESGSGQPGRRLLADKLSDV 171 Query: 192 SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + E L + L+ I I G P ++ + Sbjct: 172 ALVYEELERSLLGHYLDSEDYLRLLVEHIPRSSYLHGADIYIDGFHHFSPQEYMVIEQLL 231 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + V D + + + + + L L + + + Sbjct: 232 HRCRRVTVCLTADRPYDVGMPDELDLF-------------YLPAQTYRQLRELALANDIM 278 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 V + + + + L EA N R E Sbjct: 279 IESPVVLSVNRR---------HQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAE 329 Query: 371 AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426 ++A + + + + ALI R VK F I + P+ Sbjct: 330 IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFDIPYFMDEKEPMHYHPL 389 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485 ++ + L + + A+ VK L + A + LE L Sbjct: 390 IELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAADKLENYVLAHGVKGEKW 449 Query: 486 MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + R A N + + ++ E L + + L + Sbjct: 450 TSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLRRLERRLRRAADGRGLC 509 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + ++ Q E E+ + L + +E Sbjct: 510 TALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAEPLPL 569 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 E+ II +D + + SRL++ + G+N+GV P Sbjct: 570 AEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFIIGVNDGVIPAKVKDEG 629 Query: 663 FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN-NIPTIAS 713 ++ V + L + + +A +R L T L + + S Sbjct: 630 LVAEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPSRRLYVTYPLADGEGKALMPS 689 Query: 714 RWLQRL----------------------------------------------LVLGGTDF 727 +++L G Sbjct: 690 PLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQTYLISQLRAWKRNYGIDPL 749 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP-----RTYSFSEIKQLINDP 782 + ++ + +W +++ Y ++ S S ++Q P Sbjct: 750 WWDVYNVLISHPEWRARVEQAVSGLFYTNQAVLKREWSRRLYGKKIQASVSRMEQFQKCP 809 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------IN 832 YA +A L+L F+ + D G LFH I ++ + ++ ++ Sbjct: 810 YAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRVREQHLDWKQLSRSECERLS 867 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA-- 887 + I +++ L + + + E S + + Sbjct: 868 AEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLSEHARASGFAPVGFELSFGP 927 Query: 888 KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDP 935 + + L G DR+D +S + I DYK+ + Sbjct: 928 GGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLAL 987 Query: 936 QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q+ + + + A + Y + D + A +L E Sbjct: 988 QMFTYLDIVLTYAEQLVGEPALPAGVLYFHIHNPIIQAKQWLDNEMEVARKLLEPFR 1044 >gi|19552001|ref|NP_600003.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389664|ref|YP_225066.1| helicase, UVRD/REP family [Corynebacterium glutamicum ATCC 13032] gi|21323541|dbj|BAB98168.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41324999|emb|CAF19480.1| HELICASE, UVRD/REP FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 1016 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 124/1056 (11%), Positives = 283/1056 (26%), Gaps = 171/1056 (16%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83 ++ +V+ +S+ + +K A LR E E + + P+++S+ Sbjct: 53 VSSAVVDTVLERIRQGWEPSSMLVVATSKEAASRLRQEISESVAQMDYVSEGPLVRSVHS 112 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 V L ++ ++ + L+ D Sbjct: 113 VAFALIRDASDDDVRL---ITGAEQDAVIRELLRGHA--------DDGRGGWPQEQREGL 161 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + A+ L D + ++L L W+ A +FL+ + + + Sbjct: 162 RMVGFARQLRDFLLRAVERGVGPDELVELGERFERANWVAAGEFLRE----YKQVMKLSG 217 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 A S + A + I + P +A L+S A+V D Sbjct: 218 AHSFSAS-ELVTEALRGPEPSVKYRGVFIDDAQHLDPKSAELVSRFFPEAELAVV--AGD 274 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + S + Sbjct: 275 PQQSVFRFRGANPDFLTKLSVD-------------------------------------- 296 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + ++ + + + LI+ + E IA+ +R + Sbjct: 297 -HEVVLKGRRKASTSIVVAETESAHADLLADTVRRAHLIDGRSWSE----IAVIVRSA-- 349 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442 + + L G+ + IS + L+ + + L A+ + + Sbjct: 350 -------------GMIAPIWRTLLAAGVPVHISPTDVVLAEQRIVAAMILGLRALTESLN 396 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + L+ P+ L R L ++ I L+SL+ + A Sbjct: 397 AIELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLAESDAEM--- 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 L++ + L + + L + + + S +D + Sbjct: 452 ------LGFLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISL 505 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + +L + + + + + I + + + + Sbjct: 506 RGGASGSQADRDLDAMMALFDAAGDYVERYPSAGVRSF----ILHISEQELPTGMRERRG 561 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK------- 675 + +L + + +I+ + EG WP L + DL + Sbjct: 562 AIPEAVEVLTAHATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDLVDEGIDPDII 621 Query: 676 ---TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRL---------LV 721 +AE+ + + + + ++ +++ SR+L+ L Sbjct: 622 ISRSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEE 681 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756 + + R +L P R Sbjct: 682 ASAIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWT 741 Query: 757 ----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P L + S S I+QL+N P R + ++ P +GTL Sbjct: 742 NLRTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDR------LDSEEETPIAMLKGTLV 795 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + + +++ ++ + N+P F +I + Sbjct: 796 HAFAEAVAGGV------DAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLK 849 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 ++ ++ + + I+ + + G DR++ KSG + + D+KTG Sbjct: 850 TSRADFTEVGTEMDVSVTIDD-SVSIRGRMDRLERNKSGELVVVDFKTGKTQIAAK-DMG 907 Query: 933 IDPQLSLEAAALKAGSF---------SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 PQL AL G V + + + Sbjct: 908 DHPQLFAYQLALSKGVLHGDKISDPNPGETPDPVGGGLLVY--PATDTKAVGQRMQDPKT 965 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 E + L + L+ ++ + + + Sbjct: 966 QEDLDDFAAMLPGLAEHLRGPNL--LARVNPTCSTC 999 >gi|82701855|ref|YP_411421.1| hypothetical protein Nmul_A0722 [Nitrosospira multiformis ATCC 25196] gi|82409920|gb|ABB74029.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosospira multiformis ATCC 25196] Length = 930 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 139/943 (14%), Positives = 270/943 (28%), Gaps = 107/943 (11%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 LA L D I+ + W A + S + + S+ Sbjct: 35 RLAITLRREFDRIQ-------------AAQGISAWAAA--DILPVSAFIERIYEDALYST 79 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + E + A S+ +ARL + +LP + Sbjct: 80 HASHLPQLLTSAQEQFLWEEVVVQSAAPLLLSVAESARLAREAWRLAHEWQLLPRFGKFV 139 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL-----GNVSNEMY 321 + S + L L+ L G S Sbjct: 140 LNEDCRAFSAWSHRYKNVTRKARQIDHARLCTLVTGLCGSPGIAIPQRLICYGFDSVTPQ 199 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 +++ + +M TD ++ V +E D +E A+ R Sbjct: 200 WAALLAKLEEAGCEVDEMTRTDPAAHRFEVPYSPNRTVHRVECDVSNDEIYQAAVWARAR 259 Query: 382 LDEN--------------KKKSALITADRNLARRVKLELT--RFGINIDISAGIPLSTTL 425 ++++ + S + + V+ L + +IS G+ LS+ Sbjct: 260 IEKDSTARVGIVVPPLSEYRSSLVRIFSSVMDPDVRQALPGVPRHMPFNISLGVALSSYP 319 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 +L I +F + L++ P E Sbjct: 320 LVHTAFLVLELIQGEIEFERASLLLRSPFLAGAETEMLPRAR------------------ 361 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L + + R + R E+ LLV + C T+ Sbjct: 362 --LDAKLRKRAEPVITLERLLVLVKR---ENNANCPLLVKLLWDCEKFCKKMSTDVQR-- 414 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S + LQ V R + ++ K L + I + + Sbjct: 415 ----PSTLARAISDILQLVGFPGERAPDSSEYQTLKKWQDVLAGLALLDNVTIGMSYRQA 470 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 I + + +P+ + ILG E+ + FD L + GL++ WP NPFL Sbjct: 471 ISHLRGVAADTLFQPETPDVP-IQILGVFEAGGMMFDHLWVMGLSDEAWPLQPRPNPFLP 529 Query: 666 RVMQSDLNLK---TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI---PTIASRWLQRL 719 +Q L A + ++ +I + + + S + + Sbjct: 530 IELQRAERLPLGSPAATLELASRFTEGWLAASKEVILSHARHSGSSDTRELAPSPLIAHI 589 Query: 720 LVLGGTD-FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + + + R+L+ +P + IK Sbjct: 590 ATSDIRLFGLLPDYVKHRDLIHQGRRLERIKDEP--APGIVSGKGGEGRARGGVAVIKDQ 647 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL--MK 836 P+ A L + + D +RGTL H ++ ++ ++ NK+ + ++ Sbjct: 648 AACPFRALALHRLHAEGLKTPHPGLDAGERGTLVHEMLAQVWERIKNKSALDALAEDELR 707 Query: 837 QIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ S + L + + + +++ +LE E K + Sbjct: 708 TLLTSAAGEVIARMSARHSHTLSERLARVEQRRLVRLAREWLEEERKR-GDFTVVSTEAR 766 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAA-A 943 + I G+ L DR+D L G + DYKT P ++ +PQL L A Sbjct: 767 KSIEI--GGLALDTRLDRVDELADGRRIVIDYKT-RAPSVNAMLGERPDEPQLPLYLVAA 823 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-------KKKYSADELSEKSLKNLIE 996 + + + Y L + + + S + L + L+ Sbjct: 824 EVNAAAIAFAQVRAGEMRYTALARDNDLLPDVKGFAQSRHIDRYDSWEALVAAWFEALVS 883 Query: 997 IVTLLQNGEQPFISHLRLSEKS--NIQSEYDHLARVAEWREEY 1037 +VT NG S + + + L R+ E Sbjct: 884 VVTDFSNG----HSQVDPKKYPQTCRTCDVQPLCRIYERAATD 922 >gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] Length = 1059 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 115/1041 (11%), Positives = 271/1041 (26%), Gaps = 167/1041 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLGDVVE------------EKFTA 91 V T++A Q+L + S ++P G+V E + + Sbjct: 67 QVLGLTFTRKAAQQLEQRIRRQLIKLRDSGLIP---PGGEVAEALENIAPKVATYDSYAG 123 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 +L+ Y L PV R++ A + + + + L + L+ + +++ Sbjct: 124 ELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQLEDDRALATITET--LLKFSQD 181 Query: 152 LADIIDI---IETEEKKW-EDLHALKNEK--YGMWWLLAADFLK---------IASKYWT 196 + + + I + + D+ L + + +++ + Sbjct: 182 IDNGLKDTSHIAEHARDFRADIDNLDKSQKNGPEYSKALLGYIQTQERRVQYVPLLEALK 241 Query: 197 ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E + R +H +++ + A L+ ++ Sbjct: 242 KEQSERQVITFGEQMAVAARVARDHPVVGKQQSQRYKVVMLDEYQDTSYAQRVLLRSLFG 301 Query: 252 HPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 V D W T ++ + + +L Sbjct: 302 GDQEDLSVTAVGDPMQAIYGWRGATSENLTAFVEDFPVAPGTSAPKDQLTTSWRNP---- 357 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S + + + ++ K ++ L ++E E Sbjct: 358 -------------SGALDLANSVAEGVFEGVERPVDELSAAPHKGEGEIQLAYFESEVRE 404 Query: 371 AISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +A L+ ++ + +A++ + + L + G+ +I L Sbjct: 405 REFVAEYLKEQWEKREGDTFSAAVLVRKNRHSAPIAAALDKAGVPNEIIGLGGLLWQPEI 464 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L ++ + + D A L+ P+ G + ++ A MD Sbjct: 465 QDLVAIATMLVRPEDLPAAVRLLAGPICGLGISDIQALASRQRNLAGAREERLRWEPGMD 524 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + ++ + L + L + Sbjct: 525 PEDYLRAQLEDVTAEEPDQRV------GLADALADLGERDRYTPQGLARMEEVSAKLRHL 578 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWI 606 + S L L R G T F+ I+ +++ Sbjct: 579 RTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALLDYF 638 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI--------------------- 645 + DG + + + I+ +++ L ++ + Sbjct: 639 ALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLSRID 698 Query: 646 -LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---- 700 + G ++ + A+ + + + ++A F +A T Sbjct: 699 KVPGDDDYIEVPEDAQKRSHFQNACEEFKKADSAIKAEESARLFYVALTRTESTLTVTGS 758 Query: 701 -RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + +L+RL + ++ + + Sbjct: 759 GTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDFGESAQFPALQASPEAVAG 818 Query: 751 QPHYKRPKPFPPLEAQ------------------------------PRTYSFSEIKQLIN 780 P ++ P + S++ L Sbjct: 819 ADLVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVALRA 878 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 DP ARR + RGT FH + + E+ Sbjct: 879 DPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEDRFGSPALLGEEEL--------- 924 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 P ID ++ +FL E + + V P ++ I + G Sbjct: 925 ---------PGIDEPEDFDLEELKEAFLNSEW---AERQPEHVEAPFEITIGES--VVRG 970 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 D + L+ G + D+KTG P+ E QL++ A A + I + Sbjct: 971 RMDAVFRLEDGTWMVVDWKTGRPPQGEAMDAAKI-QLAVYAEAWRR-----IHGGEKIRA 1024 Query: 961 FYIRLKQKFKIDCITNDKKKY 981 + + + + + + Sbjct: 1025 AFYYVHDGYTFEPARLPRGEE 1045 >gi|116747927|ref|YP_844614.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans MPOB] gi|116696991|gb|ABK16179.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans MPOB] Length = 908 Score = 188 bits (477), Expect = 5e-45, Method: Composition-based stats. Identities = 120/812 (14%), Positives = 230/812 (28%), Gaps = 83/812 (10%) Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 + G+D + + + A L + L + + Sbjct: 113 LRYGIDPGEGDPANRLVEWRRGVWKEYRDALRALLLFHPASLPERLG---SFLSLNPDAV 169 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + + +P Q A++ AD E+E + Sbjct: 170 PSKTVIAGFEFAGYWEKKLFSRLADTHGALALPLPQVKAKPRAVVYADREQEVFGLLGDL 229 Query: 378 LRMSLDENKKKSALITADRNLARRVK---------LELTRFGINIDISAGIPLSTTLHSS 428 +R + + + A++ DR + +L ++ AG L++ Sbjct: 230 IRGAGEGRLHELAVVLLDRGTYAPILSQHLKDLLGAQLEGENAAYNLLAGDVLTSQSLWR 289 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L+ + +L++ P + R + L Sbjct: 290 AALLPLDFCLGGESGTQLFSLLRSPYYGYFGARGRALA-------QWDRVWREQGIEKGL 342 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 +L+ + R E E L D G Sbjct: 343 TALLGSLGGRE-------DVLPRRGAELTEGLGALTDR-------------------GTR 376 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + S+W+ + + + E + N + L+ L A E+ Sbjct: 377 AASEWSAGLRSFWKQM---EFPVIANERDRIAWQRLTGLLDGFDAELGDSSMRAAEFAAW 433 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 +T + V+P + + + ++G LE R L F L + G GV P+ PFLS Sbjct: 434 LTAAGEKAPVQPSGFEDAGIQVIGELELRGLAFKRLFVPGFLSGVIPQPARSLPFLSVRE 493 Query: 669 QSDLNLKTAEKYIGQAAHDFEMA-NGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD 726 + + TAE AAH F R + +R L E P + S + Sbjct: 494 RRLVLGGTAESQFEFAAHLFGQVQAAARETVVSRPLLGEGGEPCLPSPFWPASEETMAPV 553 Query: 727 FFDNLKKRGQCYLDW--------TRKLDYTTKQPHYKRPKPFPPLEAQPRTY------SF 772 W ++ P + S Sbjct: 554 IPWRHDLPVMQRARWVRDGIEGIAAAMERKEPAGKTHAGGESAPDLYRAERLRFPSEVSV 613 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPE 830 SE++ L+ + R IL L+ +P + D RG H ++ ++ Sbjct: 614 SELELLLACAGRFFLRVILGLEALPVPTRGLDAAVRGRKIHALLAGFGRRLRGIPGGHER 673 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----------ISHSFLEHEEKIQS-SIE 879 + +++D K+ WR + + +L E Sbjct: 674 EPEALCRLLDEMVRKDIEEQARVAHWRVELARLLGGAEGAPGLLKEWLALECSRFGEGWR 733 Query: 880 KIFVNIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQL 937 + + + + G DR+DL DYKTG P + + PQL Sbjct: 734 WTAFEPSFDNLKLRDCPVGIKGRLDRLDLHSELGCICWDYKTGAAPGMKEVLEDFKAPQL 793 Query: 938 SLEAAALKAGSFSQIDCRKVA-NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 + A++ G I R+V YI L+ K++ + + L E Sbjct: 794 PVYLLAVRKGLVPAIGDRRVTLAAGYIALQSVRKLNHCLVIGADERMESFLSQWESVLAE 853 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + ++ L + + + +Y+ L Sbjct: 854 ---KIDAARRGQLAPLWVLQPCEERCDYECLC 882 >gi|307571853|emb|CAR85032.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes L99] Length = 1163 Score = 188 bits (477), Expect = 5e-45, Method: Composition-based stats. Identities = 122/967 (12%), Positives = 278/967 (28%), Gaps = 128/967 (13%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 103 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVQ-SATNLSTSVNNKVHD 161 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + Y L A+ I+I G T ++ Sbjct: 162 ISLIYQKYEELLADKFLENE-DYLRLLAEKIADSDYLNR-TEIVIDGFTSFSKQELTVIG 219 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L + Sbjct: 220 ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 271 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 317 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + + A++T + + + + + I I ++ Sbjct: 318 RAEIEGIAREIRQLVLNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 377 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 378 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 437 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKN 542 + + + R + +P + + + I+ + L + K Sbjct: 438 WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSI--INEMRSLIVNPLATLELNLRKAKT 495 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-----NLWFEEEGKTLSSLFSKIIETGSC 597 L++ + + + + + E+ ++S+L + +E Sbjct: 496 GMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGE 555 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 556 ETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLR 615 Query: 658 TAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI- 708 S + L +A+ IG+ + L + + Sbjct: 616 QKDKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGK 675 Query: 709 ----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------ 746 S +L +L + ++ + T +L Sbjct: 676 VLSESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGY 735 Query: 747 --YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIK 776 + Y + L + S S ++ Sbjct: 736 TLSSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRME 795 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829 + + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 796 KFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEE 853 Query: 830 ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883 ++ L + + E L ++ +I + +E+ S+ + + Sbjct: 854 ECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGL 913 Query: 884 NIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929 + + + + L G DRID+ + + I DYK+ + Sbjct: 914 EVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEV 973 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + Q+ + + I + A + Y + ++ + + + Sbjct: 974 YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKS 1033 Query: 989 KSLKNLI 995 +K LI Sbjct: 1034 SKMKGLI 1040 >gi|217963571|ref|YP_002349249.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23] gi|251764606|sp|B8DF43|ADDB_LISMH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|217332841|gb|ACK38635.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23] Length = 1157 Score = 188 bits (477), Expect = 5e-45, Method: Composition-based stats. Identities = 122/967 (12%), Positives = 278/967 (28%), Gaps = 128/967 (13%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVQ-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + Y L A+ I+I G T ++ Sbjct: 156 ISLIYQKYEELLADKFLENE-DYLRLLAEKIADSDYLNR-TEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTVSLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLVLNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKN 542 + + + R + +P + + + I+ + L + K Sbjct: 432 WKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSI--INEMRSLIVNPLATLELNLRKAKT 489 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLP-----NLWFEEEGKTLSSLFSKIIETGSC 597 L++ + + + + + E+ ++S+L + +E Sbjct: 490 GMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGE 549 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 550 ETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLR 609 Query: 658 TAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI- 708 S + L +A+ IG+ + L + + Sbjct: 610 QKDKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGK 669 Query: 709 ----------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------ 746 S +L +L + ++ + T +L Sbjct: 670 VLSESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGY 729 Query: 747 --YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIK 776 + Y + L + S S ++ Sbjct: 730 TLSSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRME 789 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829 + + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 790 KFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEE 847 Query: 830 ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883 ++ L + + E L ++ +I + +E+ S+ + + Sbjct: 848 ECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGL 907 Query: 884 NIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929 + + + + L G DRID+ + + I DYK+ + Sbjct: 908 EVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEV 967 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + Q+ + + I + A + Y + ++ + + + Sbjct: 968 YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKS 1027 Query: 989 KSLKNLI 995 +K LI Sbjct: 1028 SKMKGLI 1034 >gi|251764595|sp|A4IKW6|ADDB_GEOTN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB Length = 1167 Score = 188 bits (476), Expect = 5e-45, Method: Composition-based stats. Identities = 120/957 (12%), Positives = 248/957 (25%), Gaps = 125/957 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKYGMWWLLAADFLKIA 191 L L A+ + L ++I + ++L L++ L AD L Sbjct: 107 LKLFGRAADKSGFVEQLHEMIAECKRYCLTPDELRRHAGVLESGSGQPGRRLLADKLSDV 166 Query: 192 SKYWTERLVEL-NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + E L + L+ I I G P ++ + Sbjct: 167 ALVYEELERSLLGHYLDSEDYLRLLVEHIPRSSYLHGADIYIDGFHHFSPQEYMVIEQLL 226 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + V D + + + + + L L + + + Sbjct: 227 HRCRRVTVCLTADRPYDVGMPDELDLF-------------YLPAQTYRQLRELALANDIM 273 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 V + + + + L EA N R E Sbjct: 274 IESPVVLSVNRR---------HQDKALAHLEEQFHRRPLLPYEAETDAICLYEAANRRAE 324 Query: 371 AISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLH 426 ++A + + + + ALI R VK F I + P+ Sbjct: 325 IEAVAREIIRLVRDEGARYRDIALIIRQTEAYRDLVKTVFFDFDIPYFMDEKEPMHYHPL 384 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDI 485 ++ + L + + A+ VK L + A + LE L Sbjct: 385 IELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAADKLENYVLAHGVKGEKW 444 Query: 486 MDLKSLVLDR-IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + R A N + + ++ E L + + L + Sbjct: 445 TSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLRRLERRLRRAADGRGLC 504 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + ++ Q E E+ + L + +E Sbjct: 505 TALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVDLLDQYVEMLGAEPLPL 564 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 E+ II +D + + SRL++ + G+N+GV P Sbjct: 565 AEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFIIGVNDGVIPAKVKDEG 624 Query: 663 FLSRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN-NIPTIAS 713 ++ V + L + + +A +R L T L + + S Sbjct: 625 LVAEVEREQLRELGVALAPGGREQLFYDPFFVYLALACPSRRLYVTYPLADGEGKALMPS 684 Query: 714 RWLQRL----------------------------------------------LVLGGTDF 727 +++L G Sbjct: 685 PLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQTYLISQLRAWKRNYGIDPL 744 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP-----RTYSFSEIKQLINDP 782 + ++ + +W +++ Y ++ S S ++Q P Sbjct: 745 WWDVYNVLISHPEWRARVEQAVSGLFYTNQAVLKREWSRRLYGKKIQASVSRMEQFQKCP 804 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------IN 832 YA +A L+L F+ + D G LFH I ++ + ++ ++ Sbjct: 805 YAHFASHGLRLKERNVFR--LEAPDVGQLFHAAIKQIADRVREQHLDWKQLSRSECERLS 862 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSF--LEHEEKIQSSIEKIFVNIPA-- 887 + I +++ L + + + E S + + Sbjct: 863 AEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLSEHARASGFAPVGFELSFGP 922 Query: 888 KMAIESIGIHLT--------GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDP 935 + + L G DR+D +S + I DYK+ + Sbjct: 923 GGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIIDYKSSAKTLDLTEVYYGLAL 982 Query: 936 QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q+ + + + A + Y + D + A +L E Sbjct: 983 QMFTYLDIVLTYAEQLVGEPALPAGVLYFHIHNPIIQAKQWLDNEMEVARKLLEPFR 1039 >gi|223936290|ref|ZP_03628203.1| ATP-dependentnuclease subunitB [bacterium Ellin514] gi|223895152|gb|EEF61600.1| ATP-dependentnuclease subunitB [bacterium Ellin514] Length = 1129 Score = 188 bits (476), Expect = 5e-45, Method: Composition-based stats. Identities = 113/975 (11%), Positives = 250/975 (25%), Gaps = 131/975 (13%) Query: 84 VVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + E+ + S PP + RL+ L L+ R++L L + Sbjct: 66 LSFERLAFFVFNSLQKPPPQMLDEEGRLMVLRSLLARKRDEL-------------KLFRA 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLV 200 A A++L+ ++ ++ + E LH L + + L + + + L Sbjct: 113 SARLAGFAQHLSRVLRELQHHQLTPESLHELAEQVHAVEGLSYKLHDLGTMLRDYLDWLQ 172 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + E G + + G T P L++ + H A + Sbjct: 173 AHHLQDGDNLLTFATEVLREPHAPLNFGEMWVDGFTDLSPQELDLLAQIIPHVPQATLTF 232 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 LD I + S Q A + ++ + + Sbjct: 233 CLDQVPTERI------SWLSNWSVPRRTYDRCQKRFA------GLPNVELSKELLARHMN 280 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S + + +I N EA A + Sbjct: 281 RSRFLNNSPLHHLEQHWAEPKPFVDAATAARPYSLRESLRVITCTNPEAEATLAAREVLR 340 Query: 381 SLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + + L+ N + R+ I + +S + + + L + Sbjct: 341 FVRSGGRFREVTILVRKLDNYHEALANTFKRYDIPYFLDRREAVSHHPLAELTRNALRTV 400 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 +K L E + ++ I D L Sbjct: 401 AFSWSRDDWFAALKTGLVPAEDTEIDRLENEALARGWKGSTWQHPILIHDNPELTEWAEN 460 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 ++ + + + + + + Sbjct: 461 LRRKIVPPFKNLAVNMGQQSNRP---------------SGRHLAAALRDFWQSLKVDETL 505 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 +L + +++ + EW+ I+ + Sbjct: 506 QEWSDAEIAGSDSQLAPPIHLTVWEQMNAWLENVELAFPTETLPLREWLPILEAGLANLN 565 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672 V + I SR + ++ G+NEGV+P ++ L+ + +L Sbjct: 566 VGVIPPALDQVLIGAIDRSRNPDIRLALVLGMNEGVFPAPPEQSVLLTDADREELKKKDV 625 Query: 673 --NLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGGTDFF 728 T ++ + + + R + S P S +L +L L + Sbjct: 626 ELGASTRQQIGHERYYGYVACTRARQRVVLTSAIFDAAGKPLNPSPFLSQLKQLFPSLET 685 Query: 729 DNLK---------------------------------KRGQCYLDWTRKLDY-----TTK 750 + + + TT Sbjct: 686 ETFPKSLDWRKSEHANELIVPLLRNQVQSPISKVQGVSALNKFPALAALRERLKHFSTTP 745 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 P+ L S S ++Q P+ + L+ + F+ D D+G Sbjct: 746 TEESLSPELAERLYGPALRTSVSRMEQFAACPFKFFVHSGLRAEERKKFE--LDIRDQGN 803 Query: 811 LFHNIITELI-------KKRINKNTPEINHLMKQII--------DSHFEKENLPPHIDII 855 H ++ K+ + + E +K I D + + Sbjct: 804 FQHEVLASFHEQLKTENKRWRDISPQEARERIKSIALTMMVSYRDGLLQVSEETRFTARV 863 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--------KMAIE-SIGIHLTGFADRID 906 + + + + + V +P ++ + + L G DRID Sbjct: 864 LTESLQDFVETLVGWMGQQYA-FDPKAVELPFGEDLFPAWELELGKDHKLLLHGRIDRID 922 Query: 907 -----LLKSGFV-DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS----QIDCR 955 + + DYK+ + + QL+ L+ + Sbjct: 923 ICRESEDAEEALCVVVDYKSSQKQLDPLLMEHGLQLQLAAYLNVLRHWPDPRPIFGVQRL 982 Query: 956 KVANLFYIRLKQKFK 970 + +FY+ L+ ++ Sbjct: 983 IPSGVFYVNLRGRYD 997 >gi|333030117|ref|ZP_08458178.1| hypothetical protein Bcop_0989 [Bacteroides coprosuis DSM 18011] gi|332740714|gb|EGJ71196.1| hypothetical protein Bcop_0989 [Bacteroides coprosuis DSM 18011] Length = 955 Score = 188 bits (476), Expect = 5e-45, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 56/482 (11%) Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + +I +++ + E + + ++G LE+R L+F L++ +NEG Sbjct: 481 DSGELPIKISTLKHLIDKVLSSANIPFHGEPAIGMQVMGVLETRNLDFKNLVMLSVNEGQ 540 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTI 711 PK+ +++ F+ ++ + T E A+ F ++ + + Sbjct: 541 LPKSVSESSFIPYNLRKAFGMTTIEHKNAVYAYYFYRLIQRAENITLIYNTASDGLNKGE 600 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP---HYKRPKPFPPLEAQPR 768 SR++ +LLV + G T + +R P + Sbjct: 601 ISRFMLQLLVEWPHSIERKHIEAGHALTTTPDIQFDKTPEVFQKLKERYDISLPNHEKAI 660 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826 S S + ++ Y R I L + D G++FH + K ++ Sbjct: 661 -LSPSALNTYLDCKLKFYYRYIAGLKAPNEVSDEIDAALFGSIFHRAAETIYKDLADRQG 719 Query: 827 --------NTPEINHLMKQIIDSHFEK------ENLPPHIDIIWR---HLFHKISHSFLE 869 +I +++ ID+ F+K E P + I + L+ Sbjct: 720 WIKKEDIQALLKIKPRIQEHIDNAFKKLFFKIDETQKPEYNGIQLVNSRVICSYIEQLLK 779 Query: 870 HEEKIQSSIEKIF----VNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKT-GD 922 H+ + + + + V ++ S I + G DR+D LK G + I DYKT G Sbjct: 780 HDLE-YAPFQIVGMEKTVEEQMTVSTPSGQYSIKIGGNIDRLD-LKEGILRIVDYKTGGT 837 Query: 923 NPKKETAQKLIDP---------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 + +L +P Q L A+ + Q+ +L YI Sbjct: 838 AKTPQDISQLFEPAIDRPNYVFQTFLYASIVSNKVKYQVAP----SLLYIHRAAAEDYSP 893 Query: 974 ITNDKKKY-------SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + + + + ++ E++ L + F ++ ++ Sbjct: 894 VIQMGQPRKEKIAITNFKMVEDEFKNKRQELIKDLFERDICFTQTEFP--ETCQYCDFKG 951 Query: 1027 LA 1028 L Sbjct: 952 LC 953 Score = 92.3 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 51/440 (11%), Positives = 112/440 (25%), Gaps = 78/440 (17%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L+ V I P KRA + + P S+ ++++ + L Sbjct: 20 LSRVAIVFPNKRASLFFNEYLALESQ-QPIWSPSYHSISELLQSLSDIQIGDDIKL---- 74 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + L + + + + + L D I+ Sbjct: 75 -----ISLLYNVFEKHTE----------------SKETLDDFYFWGELLLSDFDDIDKNR 113 Query: 164 KKWE-------DLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215 E DL L ++ AA +++ +E + L Sbjct: 114 VDAENLFTNLKDLKDLVDTYEFLDEEQEAA-----IQQFFDNFSLEK--------RTILK 160 Query: 216 RAEAEHLMKGTKGPIIIAG--STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 K I L L D ++ Sbjct: 161 DRFISLWDKLGNIYTSFKEELFKEKIAYEGMLYRHNIEQ------LDTNDLQYDHYVFVG 214 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + + + + G + + P Sbjct: 215 FNVLNKVESLFFEKLRDADRALFYW-------DYDQFYTSYKGFTHEAGVFINRNLDLFP 267 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALIT 393 S ++ + + I + E +A + + +L E +K +A++ Sbjct: 268 NQLSPECFNELNKP---------KKITYISSSTETAQARFLPQWIENNLGEKEKVTAVVL 318 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL-------NDFMAI 446 + L V + N++I+ G PL+ T S++ +L+ + ++ +I Sbjct: 319 CNEALLLPVLHSIPSKVQNLNITMGFPLAQTPICSLIKALMELQNQGYNAKQGYYNYQSI 378 Query: 447 ATLVKHPLAKFGFPEKYLSR 466 ++KHP + Sbjct: 379 LAVLKHPYTRQLSTTAKDLE 398 >gi|255282637|ref|ZP_05347192.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469] gi|255266930|gb|EET60135.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469] Length = 1162 Score = 188 bits (476), Expect = 5e-45, Method: Composition-based stats. Identities = 125/1053 (11%), Positives = 283/1053 (26%), Gaps = 152/1053 (14%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 + VP + +Q R + + + I S + F + + + Sbjct: 35 LVIVPEQFTMQTQRE-LVRLHPDGGLLNIDILSFQRLAHRIFEEVGADKRTV---LEELG 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + L L R +++L + +L L S I + + E Sbjct: 91 KTLLLRRAASRVQDELKVLKGNLKKMGYLQQMKSM-------------ISELTQYDIDSE 137 Query: 168 DLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 + L + + +++ + + E L + + A Sbjct: 138 KMERLLQQAEQKPSLFYKLKDIRLLYESFQEELE--GKYITAEETLEALCQVARQSAILK 195 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + I G TG P +L+ + + V + E + Sbjct: 196 GCVVAIDGFTGFTPVQNKLLRELFSLAEQVYVTVTIRAQEEFYRIRGEHELFYLSKKTIR 255 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN-----------EMYGRSMVISKSFLPPD 335 + + Q + ++L + ++ + + R + + + Sbjct: 256 SLAHTAQEAGCEILPPVVMEWKTLPRFTKSPELGFLEAYLFGGGKAQWTEPAEEPVRSAN 315 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALI 392 T P ++L A N +EA A +R L + + + ++ Sbjct: 316 PHTAEETARSGEAEPECASSGCAISLHTAANPVQEAHFAARTIRALLRQGYRYQDIAVIV 375 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + + + + I + + + + L ++L+ I + ++ ++ Sbjct: 376 GDLPSYSSYIPQVFGEYKIAYFMDSTRTVFSNPLVEFLRAVLDMIQQDFTCASVFRYLRT 435 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 L + + + L + L Sbjct: 436 GLCRIDAQKLDMLENYV---------------------LAAGVRGFSRWREPFTRAVDFL 474 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNST-----CGNLSISDWTKLTVTCLQNVCLD 567 EE L L I++ + PLV+ +T G ++ + Sbjct: 475 DEEQLALCEELRSLIMEPLLPLVSCMRQARTTAREKTEGLHTLLCHYNIQQQLADMEKQF 534 Query: 568 EHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 L E G + +F K+ E E+ +++ + V+ + Sbjct: 535 RADGQAELEKEFAGIYAMVIGIFDKLAELLREEALTLQEYTELLEAGFEEARVRLIPPSA 594 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEK 679 + + SRL + LI GLN+G P A LS + + L T + Sbjct: 595 DRVQVGDLERSRLTDIKVLIFLGLNDGWVPATGAGGGLLSDMERETLMESRVELAPTTRQ 654 Query: 680 YIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQR------------------- 718 + L + S + + ++ R Sbjct: 655 NSYIQRFYLYLNLTKPRERLYLSCSKATADGSLLRPSYVMRTIGRLFPGLSVHDEDVCES 714 Query: 719 -----------LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 L L + ++ +L+ + Sbjct: 715 FSSRVETPQNALAYLLEGFWSIRERQPSGEWLELYNWYRRKEDTKKQVQRLVEAAFLTFD 774 Query: 768 RTY----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + S S +++ + +A + + L+L + D G + Sbjct: 775 ESGIGRKAARELYGEVLVNSVSRLEKFASCAFAHFLQYGLRLQERE--EYVFRPVDMGRV 832 Query: 812 FHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLF 860 FH+ I +K + + I+ + + + Sbjct: 833 FHSAIELYSRKVEESGYDWFRIPEEVRDRFIEEAVNEVSAAYGQQILHDSARNEAMIGRM 892 Query: 861 HKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGI----------HLTGFADRIDLL 908 +I + H + + A E + L G DRID+ Sbjct: 893 KRIMRRTVWALHRQIQSGHFYPANFEVSFSQAEELEAVNIALSPEEKMRLQGRIDRIDVC 952 Query: 909 K-SGFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK--VANLFY 962 + V + DYK+G+ + QL + A ++ A +FY Sbjct: 953 EKEEQVYVKVIDYKSGNTSFDLVALYYGLQLQLVVYLNAAMELEKKVHPEKEIVPAGIFY 1012 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + D + ++ + +E+++K L+ L Sbjct: 1013 YHM-----QDPLVETDEELTPEEINKKLLRQLR 1040 >gi|167765656|ref|ZP_02437709.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1] gi|167712631|gb|EDS23210.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1] gi|291559892|emb|CBL38692.1| ATP-dependent nuclease, subunit B [butyrate-producing bacterium SSC/2] Length = 1126 Score = 187 bits (475), Expect = 6e-45, Method: Composition-based stats. Identities = 107/921 (11%), Positives = 248/921 (26%), Gaps = 125/921 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L + + EDL + + + + + + + + + E Sbjct: 125 GFIDELKSFFAEVYQYDVSMEDLKKITDGMKEEGLRSKMEDILLVMENFEDYIKERYLI- 183 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ + E K + G TG P +++ + V LD Sbjct: 184 -SEQLLDVLAQKVEQSEKLKNATFYLDGFTGFTPIQRKVLEKLLKIGKNVYVGLTLDGRY 242 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-EDVKRLGNVSNEMYGRSM 325 + + + + Y L KL D+ + + R + Sbjct: 243 VRSQYREYELFAMSKKEK---------YELIKLAQDAGTPVMPDIICWPDERDSKELRHL 293 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 +I + D+ + N R+E+ ++A + + E Sbjct: 294 ---------------EQNIERYPYEIYKDEPEDIKIRCFMNPRQESRTVANEIERFVREE 338 Query: 386 K---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 K ++TAD + + I + L L S+L I K Sbjct: 339 GYRYKDIVVLTADLDSYQNELEKSFDDLHIPYFVDVNRKLLNNPCIETLLSVLKMIQKDF 398 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + + +K + F E + N L S ++ Sbjct: 399 SYDMVFRYLKSGFSNFTMEEADFLENYVLACGIRGFARWNRPFASKLFS--------DED 450 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + R EE L L L+ + + ++ Sbjct: 451 VGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYEFLETLDVEGKMVKKQEMFEASG 510 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + + + + L ++ E K + +++ ++ ++ + Sbjct: 511 DLIAAAT--------YAKVYEQVIDLLEQMAEILGEEKLSYDDFLSVLESGLEEMQIGVI 562 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKT 676 + I +R L G+NEGV P ++ + L L Sbjct: 563 PPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIPAANGGGGVVNDHQREVLETYGINLAP 622 Query: 677 AEKYIGQAAHDFEMANGTR---HLIYTRSLRE-NNIPTIASRWLQRLLVLGG-------- 724 K + ++ L + + + S +++R+ + Sbjct: 623 GIKQSAYMEQFYLYLTVSKPTDRLYLSYRMMDAAGNNNRPSYFIERIQRIFPKLKVTMQE 682 Query: 725 ---------TDFFDNL-----------KKRGQCYLDWTRKLDYTTK-------------- 750 + D + + + W + L + K Sbjct: 683 EEVQTGYTKEEALDQMILCLQEMEFDERDDDPEKMKWMQTLYHALKELEPVGDYVDARFY 742 Query: 751 --QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 Q + L + S + +++ ++ + + L+L + TD Sbjct: 743 TNQALPLSKELIHDLYGDTISGSVTRMEKFAGCAFSHFMQYGLRLRKR--LVHEILPTDM 800 Query: 809 GTLFHNIITELIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRHLFHK 862 G +FH + + K+ K + + ++Q + ++ H + + Sbjct: 801 GKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQAVTDIQKELFESSHRNEYVLERMKR 860 Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAI---ESIGIHLTGFADRIDLLKS 910 IS + + + I M + + +G DR+D ++ Sbjct: 861 ISKRAVWAMEQHIKRGDFTPEEYEIAFGEENHLDSMTFALEDGEKMFFSGVVDRMDSIED 920 Query: 911 GF---VDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRL 965 + I DYK+G + QL + A ++ A +FY + Sbjct: 921 DENKYLKIIDYKSGKQKFDFAKIFHGLQMQLIIYMNAMMELYEKKTGKRVYPAGMFYFHM 980 Query: 966 KQKFKIDCITNDKKKYSADEL 986 N+ + +L Sbjct: 981 DDPIVNVEHENEAEDKILKDL 1001 >gi|260589314|ref|ZP_05855227.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583] gi|260540395|gb|EEX20964.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583] Length = 1144 Score = 187 bits (475), Expect = 7e-45, Method: Composition-based stats. Identities = 138/1005 (13%), Positives = 272/1005 (27%), Gaps = 143/1005 (14%) Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + S + T L + + + L R+ + +L + + + +S Sbjct: 64 VLSFERLAFRVLTEMGESQRTL---LEETGKSMVLRRVAQEKKKELKILGAKMDKQGYVS 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWT 196 S + + E EDL L++ +K + + Sbjct: 121 QMKSMVS-------------ELRQYEISTEDLEDVLEDLSSSPELYYKLQDIKTLYQGFF 167 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + L E + + M A K +++ G TG P +L+ T+ Sbjct: 168 DYL-EGSFITQEEVLD-AMGRVAPQSKKLKDSVLVLDGYTGFTPIQLQLLETLLEICEEV 225 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V + S SL ++ I ++ Sbjct: 226 YVTVT--------VAAGEDPYKMGSPHELFYLSRQTVASLLRIAKDKKISWKEYW----- 272 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 E G K P + K P Q V + EA N E A Sbjct: 273 IPEGRGEYQGRFKDNPPMAFLEKNVFRYRRKKYPKQQDA---VQIYEAQNPASEMEMTAG 329 Query: 377 ALRMSLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 +R + + A+IT D A R+ I I + L + Sbjct: 330 EIRRLVRTKGYRYRDFAVITGDMQVYAPAAARAFARYEIPCFIDEKHSVFLNPFVEYLRA 389 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 ++ I + + +I +++ L E I Sbjct: 390 AVDMIVENFSYESIFRMLRCGLNDISTEEADRLENYVIAM-----------GIRGFSRWQ 438 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + + + + P ++ + L + TP + +T + ++ + Sbjct: 439 QEWVRSYR--GENPEECVQIDKIRASLVEKWEPFYKKMKTPDASVRTYTEALYQYITANK 496 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + +N E + + + + +L K++E K E+ +I+ Sbjct: 497 IQEKLKEFTRNF-EAEGNLSLVKEYSQIYEIVMNLLDKLVEILGDKKVRIREFKEILEAG 555 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + V S + + +RL + + G+NEG PK LS + + +L Sbjct: 556 LSEAKVGIIPPTSDQVLVGDMERTRLKDIKIVFFVGVNEGKIPKEQQAGKLLSDLNREEL 615 Query: 673 NLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLRENNIPTIASR-WLQRLL 720 E+ + A + + IY R ++ S +L + Sbjct: 616 KGSLKERGLSLAPTAKENLYTQKFYLYLNLTKPSERIYLSYSRLSSSGEAMSPSFLVAQI 675 Query: 721 VLGGTDFFDNLKKRG------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---- 770 D + ++ + + Sbjct: 676 QKLFPDAVREWDVPLFAESKYGALDRLSEEMRKQDRTSPVFEELMSWFTSQKEYGELVNR 735 Query: 771 -----------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 S S ++Q + + L L + Sbjct: 736 LIDAAYYVNPQESISKGVAEALYGTELSNSASRLEQFAKCACSHFLSYGLMLRER--VRY 793 Query: 802 DPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKEN----LPP 850 + D GTL HN + +K + E + L + + EK L Sbjct: 794 EFSMADMGTLLHNSLDLFARKVREQGKSWVDLEDEERDTLAEDCVTEVVEKSGETILLSS 853 Query: 851 HIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA-------KMAIE---SIGIHL 898 + + ++ + ++ Q + + +HL Sbjct: 854 ARNAYTINRVKRMVKRSVWALQKQLKQGEFYPALTEWAFGEKDNIDSLNFDLESGQKLHL 913 Query: 899 TGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFS 950 G DRID+ + V + DYK+G + QL+L A L+ F Sbjct: 914 KGRIDRIDVCQDKENHLYVKVIDYKSGTTQLDLIKLYYGLQIQLALYLNAALELEKKRFP 973 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A +FY D I N + + + E+ LK L Sbjct: 974 DKF-VQPAGVFYYN-----TKDPILNKEDVKNPENPQEEILKKLK 1012 >gi|315503767|ref|YP_004082654.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315410386|gb|ADU08503.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1250 Score = 187 bits (475), Expect = 7e-45, Method: Composition-based stats. Identities = 129/1073 (12%), Positives = 265/1073 (24%), Gaps = 148/1073 (13%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVE 86 LVE + + + +R ELR G + P++++ Sbjct: 156 LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGHRVIREPLVRTFPAYAF 215 Query: 87 EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 ++ ++ L + L+ + + D P Sbjct: 216 GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEEPGDD-----PVGWPEDLRPALRT 270 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203 A+ L D++ +L L + W AA FL+ R V Sbjct: 271 RAFAQQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVSNRGS 330 Query: 204 -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 A P A + + + + + PA L++ VA G Sbjct: 331 VAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADTDPAQLDLLAVVAG--GGRS 388 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 ++ D T + ++ + L E L + Sbjct: 389 LVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLTTSYRAGPE----LLAAT 444 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + R P V ++ + E+ +A A Sbjct: 445 ARLARRLR---------------GPAGHRRLHPLPGVPAGTVEVLTFRSATSESAWLAHA 489 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTS 432 LR + + + + R L R + +PL + L Sbjct: 490 LREAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLL 549 Query: 433 LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 LL + D A L+ PL R + L +AL L Sbjct: 550 LLRCALEPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRALALAAGDRRPSGELLVE 607 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + D ++ L S Sbjct: 608 ALRDPAELATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWR--ESGLAERWA 665 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 T+ ++ R + L ++ + + + ++ Sbjct: 666 GAITRGRAATGEHETAQRWRAEAADRDLDAVLVLFDAAARFTDRLPGAR-TEVFLDHVLG 724 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + +T+ ++ + +L ++ L +D + + G+ EGVWP + L Sbjct: 725 QELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLV 784 Query: 671 DLNLKTAE-------------KYIGQAAHDFEMANGTRHLIY------TRSLRENNIPTI 711 D+ A+ + + F +A + ++ ++ Sbjct: 785 DVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQ 844 Query: 712 ASRWLQRLLVL-----------------------------------------------GG 724 SR+L L G Sbjct: 845 PSRFLHELAAADPPATGGGGTAPTGPAPNGPNPNGPNPTGNGPTRTATRGGIVDGPVPHG 904 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI----- 779 + + R L + + P R + E+ +L Sbjct: 905 DEHPQDGPPAALPVTLPPRGLTLSALVAELRTAVTDPATPITRRHAAAGELARLAAAGVP 964 Query: 780 -NDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKNTPEIN--- 832 P + R L D + +P + + + L+++ Sbjct: 965 GAHPDDWWGLRGLSDDRPLVDEGEPVRVTPSAMESALRCSLRWLLERHGGSGPASAAQGV 1024 Query: 833 ------------------HLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + + + + F+ E + R + L Sbjct: 1025 GNLVHAAAMLAEDASVDREALLEYVAARFDAIELAARWMAGPERQRAEAMVDKLLRWLAG 1084 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 + I ++ S + LTG DR+++ G + + D KTG + + Sbjct: 1085 NPRRLLAIEHEFAVRLDDPSRPVELTGRVDRLEVDDEGRLVVIDLKTGKSTAVTEREVAE 1144 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 PQL AA++AG F++ + ++L + E Sbjct: 1145 HPQLGAYQAAVEAGGFAEFG-EEPGGAALVQLGTGARDAKEQTQAAAGEGPEA 1196 >gi|225388059|ref|ZP_03757783.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM 15981] gi|225045882|gb|EEG56128.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM 15981] Length = 1216 Score = 187 bits (475), Expect = 7e-45, Method: Composition-based stats. Identities = 130/990 (13%), Positives = 264/990 (26%), Gaps = 169/990 (17%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L I + +DL L+ E L + + + + + + + Sbjct: 125 GFINQLKSQISELCQYGITPQDLELLQGETENPLLKQKLGDLGLIFQEFKDYIADHYIT- 183 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ E I + G TG P R++ + LD Sbjct: 184 -AEEILDILCRELPRSEMLKNSVIFLDGYTGFTPVQYRIVE--------LFITHALDVVC 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + S H LA + ++ ++ L R Sbjct: 235 AVTVDYGADPYRESGIQNLFYMSKHTVCRLAAMAKAGGVELKEDVILD---RRPAWR--- 288 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 F D ++ + V L EE + + + E Sbjct: 289 ----FAQSPALDFLEQNLYRYNGRAWKGEQDQVKLFCGQTPEEEVRYVKSRIESLVREQG 344 Query: 387 ---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + A+ T D R + + GI + + ++ ++L A+ + Sbjct: 345 LRYRDMAVATGDLAAYGREITRQFDQAGIPFFMDDKKSILENPMVELIRAVLEAV-RDFS 403 Query: 443 FMAIATLVKHPLAKFGFP---------------------EKYLSRA----KNALELVALR 477 + + +K L A + L Sbjct: 404 YENVFRYLKTGLVYDRAEGTADEAQPVWENAAGADSGGEAIDWEEASDGELADVLLGETG 463 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE----------LAVLLVDHI 527 G + + +++ DR+ + W+ S+ + + I Sbjct: 464 GGADRRYSREEAAVMTDRLENYVRALGINGWKRWDSQWEAQFKGAENLNLQELNAFRQWI 523 Query: 528 LQCITPL-------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFE 578 L + PL T + + L + + R NL + Sbjct: 524 LAPLRPLREAMSKDATVASVTQALRNYLESMELREKLEEYQAYFAARGLRGDENLAREYG 583 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + LF ++ KA + I+ V + + +RL Sbjct: 584 QVYDRVEELFERLTGLLGDEKAERKSYAQILDAGFGEIQVGVIPATIDQVMVGDITRTRL 643 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMA 691 L G+N+GV P+ L + +L E Q + + M Sbjct: 644 DGVQVLFFVGVNDGVVPQRKNGGSLLGDRDREFFKAHRLELAPTAREDGCMQKFYLYLML 703 Query: 692 NG-TRHLIYTRSLRE-NNIPTIASRWLQRL------------------------------ 719 + +R L+ T + R + S L + Sbjct: 704 SKPSRRLVITYAGRSADGKSLRPSVLLGEVYKLFPGLTAEDGSTVKWPVQTPRDGKETLI 763 Query: 720 -----------LVLGGTDFFDNLKKR-----------GQCYLDWTRKLDYTTKQPHYKR- 756 D+ +R + Y + + L + +R Sbjct: 764 QGLKTYRDLKEPDAADGALEDSQWERKFLELYRWFFGQEDYREEVKLLVQAAFYSYEERG 823 Query: 757 --PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 L + S + ++Q + YA + R L+L + + + D G LFH Sbjct: 824 IGRAAARALYGKILQGSVTRLEQYASCAYAHFLRYGLELMERR--EYELEAVDMGNLFHQ 881 Query: 815 IITELI-------KKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKI 863 I + N L+K+ + + ++ Sbjct: 882 SIDRCFQVMKAQGRDWRNLTEEGRQGLVKESVSQVVADYGNTIMMSTARYAYLAGRVERM 941 Query: 864 SHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLKSG 911 + + E+ + E + M I + L G DR+DL + G Sbjct: 942 TDRTIWALAEQVKRGDFEPAGFEVSFSAVDNLKAMRIALSPDEELQLRGRIDRMDLCEDG 1001 Query: 912 FVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRL 965 I DYK+G + QL + A + ++V A +FY + Sbjct: 1002 GTLYVKIIDYKSGGTSFDLAALYYGLQLQLVVYLDAALEMEERKNPGKEVVPAGIFYYNI 1061 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLI 995 D + K+ + +E+ ++ L+ L Sbjct: 1062 -----QDPLVEKKEAMTPEEIEQQILRQLR 1086 >gi|121535717|ref|ZP_01667520.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] gi|121305682|gb|EAX46621.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] Length = 1160 Score = 187 bits (474), Expect = 8e-45, Method: Composition-based stats. Identities = 123/981 (12%), Positives = 250/981 (25%), Gaps = 144/981 (14%) Query: 53 TKRAIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110 T R + +R + +L P + E + A LS + V +RL Sbjct: 15 TSRCLDAIRERLRQAPDGPPLLLIVPEQATFQ--AERELAATPGLSGFVRAHVMGFRRLA 72 Query: 111 --ELAR-------LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 LA + +L L L A A LA +I +T Sbjct: 73 YRVLAETGGGAAPHLTDLGKRLVLRRLLTERRDELKLLGQAAAQRTFADTLASLIWEFKT 132 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + + A L + K + + L + + L+ A+ Sbjct: 133 YGIAPDKVAAASERLGATPLAAKLHDLALLYKAFEDFL--QGRYTDPEDCLRLLAAKIPA 190 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + G P ++ + + V LD P A + + Sbjct: 191 ATLTRGAEVWVDGFEWFTPQEYGVLEALLSAAKDVTVTLCLDE--PDAPHHADETALFHR 248 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + SL L + + ++ + Sbjct: 249 SWKTR-------QSLRARAARLGVSCRE--------------EVLTAVRRFQAPILAYVE 287 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSALITADRN 397 + + P + + + EA N R E IA + R + + L+ Sbjct: 288 RYANDARPPAWRGDKQGLTIAEAANRRTEVEGIARDMIRLCRDEGYRWRDMAVLLRDMDG 347 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 V+ L + I P + ++ S L + + + + +K L Sbjct: 348 YIDLVETVLADYDIPFFSDRQRPAVHHPLAELIRSALEVVTERWAYEPVFRCLKTDLFPL 407 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 E L + +RG++ + D L + + + R++ Sbjct: 408 SRDEIDLLENY--VLEFGIRGSRWTKDEPWTFVRRLSLDEDAEPDERQQAYLDRINAIRC 465 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 A L+ Q +T T + + G L+ D Sbjct: 466 RAAKPLI-RFEQALTQAETVREMTAALYGLLADLDVPATLEKWA-AAASTARDPEQEREH 523 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + ++ L +I++T + ++ ++ ++G T + + L Sbjct: 524 RQIWHSIVDLLDQIVDTCGEQPMSLTDYAAVVNEGLEGLTFNIIPPGLDHVTV-TPLTRA 582 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEM 690 L + L G+N+GV P+ + LS +++L E + + Sbjct: 583 RLAAKVVYLPGVNDGVLPERGREEGLLSDRERAELASLGLELGPTREADVFAEQFVVYTA 642 Query: 691 ANGTR-HLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC----------- 737 L + L + S ++RL L G + L Sbjct: 643 LTRASDRLWVSFPLADAEGKALAPSLIIRRLKELSGIEALKPLPVEPPPGAEDEYIVHPR 702 Query: 738 --------------------------------YLDWTRKLDYTT--------KQPHYKRP 757 D L +Q Sbjct: 703 RSLAALAAGLRPALAGQPVGTLWRDLYNWAVARPDLAADLRRAVAGLFHRNQEQALPPEL 762 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 S + + P+ +AR L L D G FH + Sbjct: 763 AQRLYRRQGKLRGSVTRFEGFQACPFQHFARYGLALKER--AVAQLKAPDFGQFFHAALR 820 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH------------------- 858 + + + T + ++ D E+ + Sbjct: 821 QFGLRIEKELTADNQRRWQRWGDVQDEEIGPLCEAIVQELAPKLQNEILLSSAQYRSITR 880 Query: 859 LFHKISHSFLEHEEK--IQSSIEKIFVNIPAK----------MAIESIGI-HLTGFADRI 905 + + + +S + + + + + + L G DR+ Sbjct: 881 RLQRTLQRTVTRLVRLDRRSRFKPVALEQAFGRDGAALPALVLTLRDGTVLELVGQIDRL 940 Query: 906 DLLKSGFVD---ITDYKTGDN 923 D+ + + DYK G Sbjct: 941 DMAEHQGRRLLAVIDYKAGGA 961 >gi|313636694|gb|EFS02364.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL S4-171] Length = 1056 Score = 187 bits (474), Expect = 9e-45, Method: Composition-based stats. Identities = 124/962 (12%), Positives = 285/962 (29%), Gaps = 134/962 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L + + LA++ ++ EE DL + + + + + Sbjct: 4 LKVFSRATSRKGFYSELANLFKEMKQEEVSIIDLEE-SAKMLPTSVNNKVHDISLIYQKY 62 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L + L+ + + III G ++ + + Sbjct: 63 EELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIEKLMQKCDK 120 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + L+ I + E S S+ YSL + +I E++K L Sbjct: 121 LTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPVEEIKLLLE 171 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 ++ + + Q +++ + +A+N+R E IA Sbjct: 172 NKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNKRAEIEGIA 218 Query: 376 IALRMSLDENKK--KSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 +R + A++T + + + + + I I I ++ + S Sbjct: 219 REIRELTSNGYRYKDIAILTRNLGDYDVLCETVMEDYNIPIFIDKKRAMAKHPFIEFIRS 278 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 L+AI + I VK + R + LE L + + K Sbjct: 279 SLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMRRKSDILENYVLENGVQNKWKWEKKGD 338 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + R + ++E+ + ++ + + + PL T +TN + ++ Sbjct: 339 WIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVIPLSTLETNLAKAKTGIELA 393 Query: 552 DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + + E+ ++++L + +E Sbjct: 394 LALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEVLGEESLEL 453 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +++II +D + + ++LL+ + G+N+GV P Sbjct: 454 SSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVMPLRQKDKG 513 Query: 663 FLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPT---- 710 LS + L +A+ IG+ + L + + + Sbjct: 514 ILSDQDRESLREQNSSLKPSAKNNIGEEDLLAYKIVSLPSDKLFLSYPVADEEGKMLSES 573 Query: 711 ----------------------------IASRWLQRLLVLGGTD-FFDNLKKRGQC---- 737 SR+++ G + KRG Sbjct: 574 NYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSNV 633 Query: 738 -YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + + D + + + L + S S +++ + Sbjct: 634 WWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVSRMEKFFSC 693 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EI 831 + +A+ LKL+ HF+ D G +FH + + ++ N E+ Sbjct: 694 EFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWITEELKRNNLDWGILTVGECKEL 751 Query: 832 NHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK 888 L + + + E L ++ +I + +E+ S+ + + + Sbjct: 752 AKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFG 811 Query: 889 MAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KKETAQKLID 934 + + + L G DRID+ + + I DYK+ + + Sbjct: 812 LKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLALTEVYYGLA 871 Query: 935 PQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 Q+ + + I + A + Y + +F +++ + + +K Sbjct: 872 LQMLTYLDIVVTNAQKMIGKSAEPAGVLYFHMHNQFVQAEKELTEEEIAKEIQKASKMKG 931 Query: 994 LI 995 LI Sbjct: 932 LI 933 >gi|171779649|ref|ZP_02920605.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281751|gb|EDT47185.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1080 Score = 187 bits (474), Expect = 9e-45, Method: Composition-based stats. Identities = 119/969 (12%), Positives = 272/969 (28%), Gaps = 147/969 (15%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + ++ L + K L D+ ++T DL L + L Sbjct: 95 SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLKEL-------HSAEKQEDL 147 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247 + L+ + + + HL + + +I G T L+S Sbjct: 148 VKIFLAVNDILLANQYDNQSKIAFFTKQVASGHLDDALENVVLVIDGFTRFSAEEEDLVS 207 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + I+ A ++T ++ + L + Sbjct: 208 LLEEKCAQVIIGTYSSQKAYKATFSTGNVYQASLD-------------FLRSLAAKFQTQ 254 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + S E + + + ++ TSD+ T + N+ Sbjct: 255 PEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTHDDKEHYAIWDVI----------NQ 304 Query: 368 REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 +EE +A A+R L + + ++ D + R ++ I +S Sbjct: 305 KEEVEHVAKAIRHKLHQGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDH 364 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + L+K L + Sbjct: 365 PLVHFIDSLERVKRYRFRMEDVVNLLKTGLYGSFTQDDLDL------------------- 405 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + ++ ++ + EE + + I+ PL+T + Sbjct: 406 ---FEQYLIYADIKGQSKFAKEFTIAYKGEEHLAYINGMREQIM---APLLTLFKAQKQL 459 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRK--------LPNLWFEEEGKTLSSLFSKIIETGS 596 S + +T L+ + L E+ + E+ +T + + + Sbjct: 460 G-----SSLLEKLMTFLRAISLPENLERTVATFSENEQEKHEQVWRTFTGILEQFQTIFG 514 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 K + E++ ++ + + + + + G+ + +PK Sbjct: 515 QEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNKFVFALGMTQSHFPK 574 Query: 657 NTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRE 705 +S ++ +N TA+ ++ + F + T L+ + Sbjct: 575 IAQNRSLISDEERAKVNETTADNQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIA 634 Query: 706 NNIPTIASRWLQRLL-----------------------------------VLGGTDFFDN 730 N S +L L L + + Sbjct: 635 NESEDKESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKAFLSRVIEVNRLAIEEDREL 694 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEI 775 K+ + R L + P +P S S + Sbjct: 695 SKEEQTFWSVAVRYLRKKLANEGVELPLIKDNMQTKPVSAEVIETHFPSDEPINLSSSAV 754 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 N+ Y + + +L L + PD + GT H + ++K ++ + + Sbjct: 755 TTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDASDQAFDDKLNRA 812 Query: 836 KQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 Q + F+ + I+ S + + I+ P ++ + + Sbjct: 813 IQTTNAEDAFKFVYEEDEESRYSLTVLEDIARSTATILRQD-AQIQVENEEEPFELMLAN 871 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + G DR+D L G + + DYK+ N + ++PQL AL+ Sbjct: 872 A-VRIRGIIDRVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKIKS- 929 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 + K+ Y+ + + + + +++ E K L L E+ ++S+ Sbjct: 930 ESDKIFGAMYLHM-----QEPKVDLSSVATTEKILENLSKELRYR-GLFLEDEKGYLSNG 983 Query: 1013 RLSEKSNIQ 1021 ++ Sbjct: 984 NYHLNDSVY 992 >gi|238926788|ref|ZP_04658548.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC 43531] gi|238885320|gb|EEQ48958.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC 43531] Length = 1198 Score = 187 bits (474), Expect = 1e-44, Method: Composition-based stats. Identities = 115/1001 (11%), Positives = 263/1001 (26%), Gaps = 150/1001 (14%) Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 L P +S+I R + L ++L +L + ++ + L Sbjct: 80 LETGGEHLPRISDIGRRILLKDILLQHSRELSVFQRSVHKR-------------GFTEVL 126 Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTERLVELNASSPVGY 210 I ++ + + L + G L+A L R+ + Sbjct: 127 GHTIAELKRDRLSSDHLRQAADVSTGEHARLSAKLTELATIMDELAARME--GRLTDHTD 184 Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD-CHIPTA 269 ++ + A+ + + G P + + + V +D T Sbjct: 185 RMERLAAQLIDAPFLRGAELWVDGFDFFNPQELAVFRALFRVVDTVHVSLTMDGRDDGTH 244 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 ++ + E + +Y T + ++ Sbjct: 245 VFTNLPENIYDTGLFARSYQTMHL---------------LQQIFTEEQPSAEIGIRLMPV 289 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 L + ++EA N R E + A + +N Sbjct: 290 QHRARTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILRLARDNGYRY 349 Query: 387 KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 ++ A++ D +L + GI + P + + +L ++ ++ + Sbjct: 350 REIAVLVRDVDLYGDLLSLAFADCGIPFYLDVKRPSAHHPLAELLRAVAQMTWRGWAYET 409 Query: 446 IATLVKH---PLAKFGFPE------KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++ PL E A + LE L S Sbjct: 410 VFRALRTGFFPLLGTEEDEDAPPLCADWQEAVDRLENYCLAYGIRSESQWTATEPWDFVQ 469 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL--SISDWT 554 + + +++ L I + ++ L + ST ++ D+ Sbjct: 470 RR-VTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRRHESTARVRTKALYDFL 528 Query: 555 KLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 E R + + +LF +++E ++ ++ +++ Sbjct: 529 DELCVPQTLRLWSETADREGRLADAAAHRQIWSSCMALFDQLVEVRGDDPLSSRDYEELL 588 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + +D ++ + + ++ + + + G N G+ P+ + S Sbjct: 589 SDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVIGANAGIMPRAGTTSGVFSDTEL 648 Query: 670 SDLNLKT--------------AEKYIGQAAHDFEMAN--GTRHLIYTRSLRE-NNIPTIA 712 + + + +L + +L + Sbjct: 649 LFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFTEARDYLWVSYALSSVDGSTLAP 708 Query: 713 SRWLQRLL-----------VLGGTDFFDNLKKRGQCYLDWTRKLDY-------------- 747 S + RL L G D L + T L Sbjct: 709 SPLIARLRRISSSFFSIPLALAGRDDPLLLSAPYPAFSHLTAALREKKERGEMPAMWGDV 768 Query: 748 ------------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + + + S + ++ P+ Sbjct: 769 YNWMLQDAVMQPLLRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLETFRQCPF 828 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINHLMKQIID 840 +A L+L + + D GTL H I+ E ++ + + I+ Sbjct: 829 RHFAMYGLRLQQRD--RYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALAEAPEKIE 886 Query: 841 SHFEKENLPPH-----IDIIWRHLFHKI---SHSFLEHE--EKIQSSIEKIFVNIPAKMA 890 ++ H +RH +I + ++H SS I Sbjct: 887 ELLQELIPQVHSTVLMSRASYRHRIERIRCTAQQTIQHLTSWAAASSFHPYGFEISFGRR 946 Query: 891 -----------IESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNP-KKETAQKLIDPQL 937 + + + L G DR+D++ + DYKTG + + QL Sbjct: 947 NDGVRLADFPLADGMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPEIRHGLKMQL 1006 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 L ++ S A + Y +K + D+ Sbjct: 1007 LLYLFVVR--SILDTGEVFPAGMLYAPVKNPIVPCNVRLDE 1045 >gi|187251692|ref|YP_001876174.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium minutum Pei191] gi|186971852|gb|ACC98837.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium minutum Pei191] Length = 994 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 127/1084 (11%), Positives = 291/1084 (26%), Gaps = 197/1084 (18%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 L G L E NP L V + P+ R + L+ E G + + Sbjct: 9 GALEGALKEVVAGIKQNP--LEKVLVLTPSSRLSRYLQIFLTENYGSTAN-------ISF 59 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + +A + + + L A+ + + K L +S S Sbjct: 60 MKFSALSAKIDAEFTAP-----NTKKLLSAQHLQNFILKNIVGENGLVKRVYISALKSTL 114 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-L 202 + A + + E A ++ + L + + L Sbjct: 115 RDMADALIVPATLKEHAAEG-------AFGAKEDNEYMSA----LADTYERYQRALSSVP 163 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S Y +++ + +I G + + V + + Sbjct: 164 GMRSYKEYFESVVENIPASKFLSSFKAVIFYGFYDFTGTQLEIFNAVRQNYKTIMFF--- 220 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + T + ++ + L + +E V+ Sbjct: 221 -PYRKTQAYKFTSKFFESNI--------------------LGMSKETVE----------- 248 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 P D L N + + + ++ +I A E + A + Sbjct: 249 --------LEPAPGVLGAAEDALFNHLISGEAENKNIRIISASGVNGELFAAAKTILELT 300 Query: 383 DENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + N + AL + + I ++ S L + +LLN Sbjct: 301 ENNGYKFSEIALCARVLEPYKNNLINIFEQNKIPLNTSLEFGLLSHPLGIFCFNLLNLAH 360 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + +++K + L L Sbjct: 361 NGFYREDVLSVIKSQYFAVK------------------------NNWRALAQNSLV---- 392 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + W++ ++++D + + T L + + + V Sbjct: 393 ---ERGLEQWENLINKKDPAYDSSFLSFLTNLGTQLGFFNKPYPWDVLSKHAVKILEDFV 449 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + E + + + FS + E+ E+++ + + ++V Sbjct: 450 D-ANILTEGEKTVFNTI---VDTIIQINQFSLVRESAKE-----KEFLEELNEALKEQSV 500 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------ 672 + + R +F +IL G+NE V+P+ ++P L + L Sbjct: 501 GKVQNSELGVTAGDVMGLRGQHFKVVILLGVNEKVFPQIVREDPLLRDKFRRTLRDVQGF 560 Query: 673 --NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGG----- 724 K + + F +++ L + + + S +L + G Sbjct: 561 WIGQKLDRFEEEKLFYYFTLSSAREKLFLSFQRSDEEGKAVVPSLYLTEVCRAAGIELEK 620 Query: 725 ---------------------------------TDFFDNLKKRGQCYLDWTRKLDYTTK- 750 +N+K G + + Sbjct: 621 NITNISRRELEKYFQTPQEFLNSKEMLTKIFSFPSVEENIKAAGFDWDALASYYNAAKAM 680 Query: 751 --------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF--K 800 + +S S ++ L P + + L LD + Sbjct: 681 SARSSLGAYDGIVNYGDEIFSSLSKKGFSASALQNLAECPMRFFFIKALGLDEEADILKR 740 Query: 801 KDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIID-----SHFEKENLPPHIDI 854 +GT++H I+ + + + +++I+ +++ L P + Sbjct: 741 DAIASNIKGTIYHKILQRVYTEIDREISMDSALAALEKIMALEMSFERYKEFGLYPVVWQ 800 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGF 912 + F++ + + + A K I L G+ DRID Sbjct: 801 VITEKMAAALQEFVKKDVESMEGFAPVMFEAAAAAKHDFAGEEIKLHGYIDRIDRRG-KE 859 Query: 913 VDITDYKTGDNPKKET----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 I DYKT + Q + L + + + + ++ ++ Sbjct: 860 YRIIDYKTSQR-SVKDLKKVIFNKKYLQPVIY-WILA-SALKEFEEMNNTSFSFLNIEDG 916 Query: 969 FKIDCITNDKKKYSAD-ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 + ++ SA+ +L + N I+++T + FI+ E + + ++ Sbjct: 917 Y------FRRELTSAEFDLIKDKFDNFIKLLTGFIKHGKFFINE---GENNCKYCTFANV 967 Query: 1028 ARVA 1031 R Sbjct: 968 CRKG 971 >gi|242373133|ref|ZP_04818707.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis M23864:W1] gi|242349084|gb|EES40685.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis M23864:W1] Length = 1155 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 280/989 (28%), Gaps = 145/989 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191 ES L L S + ++ LA+ I + + L +E + + + Sbjct: 104 ESELKLYRSQSRYYGFSEKLAEQIQDFKKYSVTPDHLEQFISEHQLQTRTQHKLEDISLI 163 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 ++ R+ + + ++ + I I G R++ + Sbjct: 164 YRHLEARMSGE-FITTEDSLEQFIDQMSQS-EWLKRAEIFIDGFHNFSTLEYRMIEALVQ 221 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H VL D + ++ + TH L + L+I+ + Sbjct: 222 HAKKVTVLLTTDGNQDQ----------FSLFRKPSEVLTH----LEDIASHLNIELNKTQ 267 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 E + S T + + ++E+ + REE Sbjct: 268 FNHRYRFENKDLKHLESDFDALQMTPQGH---------------SNAIEILESSSMREEV 312 Query: 372 ISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + + ++ + A++ D + A + I +I +S Sbjct: 313 NELARRILRDVRDHQLRFQDIAILYRDESYAYLFDSIFPLYDIPFNIDTKKSMSHHPIME 372 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++ SL+ I + A+ L K + + LE AL +D Sbjct: 373 MIRSLIEVIQSNWNINAMLRLFKTDILTSQLKNSSYL--IDLLENFALERGVYGKRWLDE 430 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQ---CITPLVTYKTNKNST 544 +++ +H + R + EE L ++D +L ++ T + + Sbjct: 431 DIFNVEQFNKMGRKSHALTPEERETYEEVIRLKNHVIDKVLYFEKAMSEATTVRDFATAF 490 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + +T + ++ + ++ + + Sbjct: 491 YESMEYFELPNQLMTERDEL-DVAGAHQQAEEIDQIWNGFIQILDDLVTVFDTQDMSLKQ 549 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++++ ++ + + I +++ N + + G+N+G P+ + + + Sbjct: 550 FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYMVGMNDGSLPQPVSSSSLI 609 Query: 665 SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNI-PTIASR 714 + + T++ A M + + ++ SL N+ S Sbjct: 610 TDEEKKYFEQNADIELSPTSDILQMDEAFVCYIAMTRARQKVTFSYSLMGNSGDEKEISP 669 Query: 715 WLQRLLVLGGTDFFDNLKKRGQ-------------------CYLDWTRKLDYTTKQPHYK 755 +L ++ + N+ + + W + D + Sbjct: 670 FLSQIKDMYHHLEITNIHQEHEEQPISLMQHVHQTKIELFDALRAWLDQEDVDIRWLDAY 729 Query: 756 RPKPFPPLEAQ-----------------------------PRTYSFSEIKQLINDPYAVY 786 + + S S + P+ Y Sbjct: 730 QVIRDDERLNRGLDYLITSLTYDNETIQLNESLTQQLYGKTINASVSRFEGYQQCPFKHY 789 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 A L+L+ K + D G +FH+++ + + ++ + + E Sbjct: 790 ASHGLRLNER--TKYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIRALTEEALEMI 847 Query: 847 NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888 +++ I + L + S + Sbjct: 848 LPKVQFNLLNSSAYYKYLSRRIGSIVETTLSALKYQTGFSKFVPQRFETGFRKSPKNKEE 907 Query: 889 ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNP---KKETAQKLIDPQ 936 + I I++ G DRID I DYK+ + + Q Sbjct: 908 LVAQPLHTKQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSTSSATLDLTKVYYGLQMQ 967 Query: 937 LSLEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991 + + + + I K L Y + + + K + + ++ EL + Sbjct: 968 MMTYMDIVLQNQERLGLTDI--VKPGGLLYFHVHEPRIKFENWSKIDEEKLDKELIKSFK 1025 Query: 992 -KNL----IEIVTLLQNGEQP-FISHLRL 1014 L E++ + + +P F S + Sbjct: 1026 MSGLLNSDEEVIDAIDSRMEPSFTSDIVP 1054 >gi|165924170|ref|ZP_02220002.1| conserved hypothetical protein [Coxiella burnetii RSA 334] gi|165916385|gb|EDR34989.1| conserved hypothetical protein [Coxiella burnetii RSA 334] Length = 680 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 213/696 (30%), Gaps = 76/696 (10%) Query: 362 IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416 + N E ++A E +K + D R L L + +IS Sbjct: 34 VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 93 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ + I L D M + T+ + + Sbjct: 94 VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 140 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534 L + + ++ + P + + + L + Sbjct: 141 -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 186 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L S W + L + R L + +++ + + L Sbjct: 187 ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 240 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ W Sbjct: 241 TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 300 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711 P + NPFL +Q + A +I + L+E +I Sbjct: 301 PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 360 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 S ++ + D + + L + + E +P + Sbjct: 361 TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 414 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 415 SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 474 Query: 831 -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 475 SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 533 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941 + I + L DRID I DYKTG + +L QL L A Sbjct: 534 TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 587 Query: 942 AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + +++++ +K+ I +KF + +EL + L + Sbjct: 588 YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 646 Query: 999 TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 +G+ + + S+ L R+ E Sbjct: 647 VDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 678 >gi|194290035|ref|YP_002005942.1| helicase, c_term recb family exonuclease [Cupriavidus taiwanensis LMG 19424] gi|193223870|emb|CAQ69879.1| Putative helicase, C_term RecB family exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 957 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 156/1046 (14%), Positives = 300/1046 (28%), Gaps = 123/1046 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P F + A F P A V + + + + Sbjct: 8 PGPDFLEQAATA------AWYFLDRCGAPEAGAHVVVPTAAQIPGGRQALDAAARAAGRP 61 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 +LP + +LG + + L P S RLL + + + + Sbjct: 62 RLLPRVLTLGHWLLD-------LPPEGAPVRSPAARLLAVQQAV-----------RGQDW 103 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 + A L++ L I D + + + L L Sbjct: 104 LRRAFGAQNETAAWGLSQTLLAICDELSARWLEDAAIRDDDEIDGDDRAGLLQGALARTY 163 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + L E +A +A + G +PA R + ++ Sbjct: 164 SH----LSERFLGEEARIVLAFWQALS--------------GPDDPLPARRRALRELSQQ 205 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 G ++ P + + + L Sbjct: 206 LRGPVIWIAPTPPTP------------------------LEAAFLRDAAELVPVLRVGYD 241 Query: 313 LGNVSNEMYGRSMVISKSFLPPD--TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + G + + D +P + V +I +E Sbjct: 242 WSGQDDGDAGWYHALLALWPEARIAGDDESAVQAAPPAMPALPPRRPSVRVIGCARFEDE 301 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A + A L L+ +++ AL+ DR +ARR + L R G + G LSTT ++ L Sbjct: 302 AAAAAAQLVQWLNAGRRQVALVAHDRVVARRARALLARAGAPVRDETGWKLSTTRAAAAL 361 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + + + D A+ L+K P P+ A AL +R + L+ Sbjct: 362 MRWFDLLLRDGDTAALLDLLKSPFC---LPDVAARGAAIALLEHQVRREGITGGWARLRQ 418 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L H P + + + ++ IT L + Sbjct: 419 LFA----------HAPASTLQDAGDGEDADQAPRRAAHGLITVLADEAARWPRGFAQHPL 468 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + W + L + + + + ETG + E+ +++ Sbjct: 469 ATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPRDETGGHATLSQGEFRAMLS 528 Query: 611 RLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L++ K + IL +R+ F+ +++ G ++ P + A+ F S M+ Sbjct: 529 ALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAAELMFFSNQMR 588 Query: 670 SDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDF 727 +L+L+ E Q A D + ++ T P S W++RL Sbjct: 589 RELDLEDREARFAQQARDLAEVLLNNDDVVLTWQRYGSRGEPHHVSGWIERLA------- 641 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + G + T P P P +S L PY +A Sbjct: 642 -ACCARAGVSIEGAATPQAHETFADVRGMPAPAAEPALVPVRWSAQAYNMLRRCPYQFFA 700 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIID 840 R+L L + + ++ D G H ++ K+ + + + +I D Sbjct: 701 GRMLGLAGLETVSDELEKRDIGETLHRVLLTYHKELHARRERGETLSDDQRLARLGEISD 760 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAKMAIE---SIGI 896 F I + + ++ S++ + ++ I A + + + Sbjct: 761 EVFGALMAEDGNAIAYYRRWREVLPSYVAWQSAREAEGWFWRGGEIDAGIDLPMPDGQPL 820 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAAALKAGSFSQIDC 954 LTG DR+D G + DYKT + + A+ D QL Sbjct: 821 RLTGRIDRLDQGPGGAHAVLDYKTQSATRLKRKLAEVEEDCQLPFYGLL----------R 870 Query: 955 RKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 A ++ L + + + + + + V L+ G + L Sbjct: 871 ADAAAGSWVSLEGAREGAPAAQREVGLPDFEAAVTWLERQMRDDVMRLRQG-----ARLP 925 Query: 1014 LSEK--SNIQSEYDHLARVAEWREEY 1037 + + L R W Sbjct: 926 AFGDASACVYCTARGLCRKGFWDSTA 951 >gi|284802714|ref|YP_003414579.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578] gi|284995856|ref|YP_003417624.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923] gi|284058276|gb|ADB69217.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578] gi|284061323|gb|ADB72262.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923] Length = 1163 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 103 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 161 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 162 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 219 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 220 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 271 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 317 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 318 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 377 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 378 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 437 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 438 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 497 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 498 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 557 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 558 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 617 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 618 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 677 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 678 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 737 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 738 SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 797 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 798 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 855 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 856 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 915 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 916 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 975 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 976 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1035 Query: 991 LKNLI 995 +K LI Sbjct: 1036 MKGLI 1040 >gi|220929197|ref|YP_002506106.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10] gi|251764557|sp|B8I2Y3|ADDB_CLOCE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|219999525|gb|ACL76126.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10] Length = 1149 Score = 187 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 109/921 (11%), Positives = 240/921 (26%), Gaps = 135/921 (14%) Query: 147 WLAKNLADIIDIIETEEKKWED----LHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L+ +I ++ + E L L ++ Y +K+ + LV+ Sbjct: 117 GFVNTLSTLITELKRYNVRAESFDEVLQGLADDNYLSH---KLKEIKLIYSEFDSMLVDR 173 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + ++ L+ ++ E K I I G G P ++S + + Sbjct: 174 YRDT--DDELTLLSSKLEGTEIYAKSEIWIDGFAGFTPQEVEVISKLIQQAENVHITMCT 231 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + S S Y + L V Sbjct: 232 DILFDDVQADLTDVFAAVKKSCKKFVSIAESYGVKIL--------------PPVCLNTPN 277 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 L ++ + ++P D+ L E+ N E A + Sbjct: 278 LPRFKDSRELQSLETNYCSYSYRAYQLP-----TQDIELFESVNIYTEIEECARDIIKQC 332 Query: 383 DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 +N K + T + + ++ I I + ++ ++ S+L Sbjct: 333 RDNGMQFKDITVATRNLTGYENLIGVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFT 392 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + + ++ +K L + + + D Sbjct: 393 ENWSYESVFRYLKSGLTGIDNTKIDILENYVLACGIRGSRWTQEADWNTSIEF-RPDDGQ 451 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDH---ILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + N + ++ E +E + + I ++ + Sbjct: 452 KPENDEMLLNINKTRNEIREPLIRFRNRTKGRRTAGDFCAGIYEYLVEIGVEQRIRNYIE 511 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 Q +++ L +F + +E + ++ ++ + Sbjct: 512 KFTQSGQLRLAG--------EYQQVWNILMDVFDQAVEVMADETFGLEKFANVFKIGLAE 563 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + + + R L + G N+GV+P LS + L+ + Sbjct: 564 YKISSIPASLDQVLVGSIEHIRSHEIKALYILGTNDGVFPSAGMSEGVLSDADREVLDKR 623 Query: 676 TAE-------KYIGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVL---- 722 E + + + ++ L + S + R+ + Sbjct: 624 GIELASDTKTRAFDEQYLIYRTLTTPKNYLRLSWPIADHEGRTMRPSTIISRMRKIFPKV 683 Query: 723 ----------GGTDFFDNLKKRGQCYLDWTRKLDYTTK---------------------- 750 D + + L + Sbjct: 684 TEKSNIVKPSADKQHIDLIASPIPAFNQLVCALRQKNEGIEQGEIWREIFAWFSGQDEWK 743 Query: 751 -------QPHYKRPKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFI 796 R P +++ R + S +++ + P+A Y + L Sbjct: 744 QKCDAMINALKYRNIAAPVDKSKIRELYGKSPYFTVSRLEKYTSCPFAFYVQYGLGARER 803 Query: 797 PHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---- 845 D GT H +I K + + + +I+D + Sbjct: 804 K--IYRMSPPDVGTFMHAVIERFSKMVDENNYSWREFDRQWCSEQVSKIVDELLDSMKNT 861 Query: 846 -ENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK---------MAIES 893 + ++ +L E +SS E + + + ++S Sbjct: 862 ILGGSKRFKAL-AVRLKRVVTRAVWLITEHIRRSSFEPVGYEVDFGDGGAYPPMVIELDS 920 Query: 894 IG-IHLTGFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948 I L G DRID ++G + I DYK+G+ K + QL AL S Sbjct: 921 GEKIRLVGRIDRIDALRAENGTYLRIVDYKSGEKDFKLSDVYYGLQMQLITYLDALWEYS 980 Query: 949 FSQIDCR-KVANLFYIRLKQK 968 + + Y R+ Sbjct: 981 DKSNGEKIIPGGILYFRIDDP 1001 >gi|16804307|ref|NP_465792.1| hypothetical protein lmo2268 [Listeria monocytogenes EGD-e] gi|224500934|ref|ZP_03669241.1| hypothetical protein LmonFR_00185 [Listeria monocytogenes FSL R2-561] gi|81507825|sp|Q8Y510|ADDB_LISMO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|16411738|emb|CAD00346.1| addB [Listeria monocytogenes EGD-e] Length = 1157 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQQALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|229918201|ref|YP_002886847.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b] gi|229469630|gb|ACQ71402.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b] Length = 1145 Score = 186 bits (472), Expect = 2e-44, Method: Composition-based stats. Identities = 106/961 (11%), Positives = 251/961 (26%), Gaps = 138/961 (14%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 + + L E L+L N + L +I +++ + E L L Sbjct: 85 QFLDQTGTHLLLRRVVEMSEERLTLFRRTMNQFGFYEELNQLISMLKRGLVEPEHLLRL- 143 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 + L L I + + + + E + Y +++ E T + + Sbjct: 144 -SEQAQHRALKLQDLSIIYEGFLK-MTEGKSLHAEDYFNVMLQIIPE--TDLTDVHVYVD 199 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G ++ +A + ++L I S + + Sbjct: 200 GFNEFSEQELAVLVALAEKVDVDVLLT-------------IDPVSLYRLNPLFGPTQRTL 246 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNI 352 +LL ++ R + + S + Sbjct: 247 MRFKELL---------------AERQIPSRDELYDTVYRYTHPSLRYLEATFDQLTAEPY 291 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTR 408 + + L A + E + + E + AL++ + L + Sbjct: 292 TGSENRIDLHAAVDRTVEVEAAVREVIRLTREEGYRYRDIALVSRSLDEYGDLESQALQK 351 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 G+ + P+ +L + + + ++ +K L + + Sbjct: 352 MGLPYFLDERQPMLDHPLVELLKATIEIALRGYREESVFRALKTELV--VLDPVHRRTSV 409 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + LE + Y D L + + + E +++ Sbjct: 410 DRLEAFVIERGIKHYHWHDEWQLRRRSGEEARLTSEELD----IEVELNRSRERVIETFD 465 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKL--TVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 ++ L KT + T + + + +T ++ ++E L + + Sbjct: 466 PLLSDLKQAKTMQAYTHAMYAFLERVGVSDCLTHWRDEAIEEAELLEAREHTQVWDAVLH 525 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 L ++ + ++ ++ +D L I + RL++ + L Sbjct: 526 LLEQLEAAAPEETLSTDLFLQMMDTGLDSLRYALIPPSLDQLTITDYVRGRLIDKKVVFL 585 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANG-TRHLI 698 G NE P T ++ L+ T + + + ++ + L Sbjct: 586 LGANEDQIPLVTTQSKLLTDQDLDFMHENGLRAGKATEHLFDDETYYLYKAVTAPSERLY 645 Query: 699 YTRSL-RENNIPTIASRWL----------------------------------------- 716 + +L +R++ Sbjct: 646 ISYALVDRTGKAVQPARFIADLKARLHQNVIKTHFAEAGEHRPRDQFAFLTNVNQTAAVT 705 Query: 717 -QRLLVLGGTDFFDNLK----------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 L L ++ G+ L + P + L Sbjct: 706 ALELQRLSRHYPIQDMWFAVYNELLKHPDGRERLQLLTSALFYQNIPESLDDRVAKSLYT 765 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI----- 820 S S ++ P+ +A L+L + D G L+H I + Sbjct: 766 PSIRASVSRLETFQACPFKHFASYGLRLKERR--LYRLEAPDIGNLYHRTIEHMSQTVKM 823 Query: 821 --KKRINKNTPEINHLMKQIIDSHFEKENLPP-----HIDIIWRHLFHKISHSFLEH--E 871 K+ + E +HL +Q + E + + + E E Sbjct: 824 DGKEWRDVTPDECSHLAEQAV-ELVTPEIQHAILMSSNRYAYLKKKLTDVVSKTAEVLIE 882 Query: 872 EKIQSSIEKIFVNIPA-KMAIESIGIHLT--------GFADRID---LLKSGFVDITDYK 919 + + + + + L+ G DR+D + +V I DYK Sbjct: 883 QSKRDGFDPEAFELAFGSGQFPPVSFTLSNGATCELVGRIDRVDTAMVHDQLYVRIVDYK 942 Query: 920 TGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 + + Q+ + ++ + A Y + + + + Sbjct: 943 SSKREVDFAEIYYGLAMQMLIYLKVLIEQAEVWTKENVAPAAALYFHVHRPLVPPASSEE 1002 Query: 978 K 978 + Sbjct: 1003 E 1003 >gi|254282614|ref|ZP_04957582.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] gi|219678817|gb|EED35166.1| conserved hypothetical protein [gamma proteobacterium NOR51-B] Length = 815 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 108/858 (12%), Positives = 238/858 (27%), Gaps = 95/858 (11%) Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-- 274 + +I + + + + + VL + + + Sbjct: 1 MLTALEERLLWQEVIERDMAATGFSLLQPTAAASEAMRCRDVLLRHEVPVDDFSVRRLFG 60 Query: 275 --TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 ++ +T + Q LA D L + + SN + Sbjct: 61 WDSDCQRFLTWLEHFDTALIQSHLATQADCLRACADVG---SSESNPGETVDLFHCYDLQ 117 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392 P + + + P Q + L + E +A K + ++ Sbjct: 118 PLVIAALDRQVQARSISPTEQPETALPPLTTFPTRQAELAEVARWAADRHRAGKGTTVIV 177 Query: 393 TADRNLARRVKLELTRFGI----------NIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 AD R + R ++ S G+PLS T L L + D Sbjct: 178 LADMASDRALLEYALRAEFDCLDARYNELPVNFSLGMPLSATPMYRSLLCALRLMLTSVD 237 Query: 443 FMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + L P E L + + + L Sbjct: 238 RSDLLFLFTSPFLPLACRSEESPQLLVIQQLFALGKPNLECTDIRHYLAK---------- 287 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + ++D + + V + +W L Sbjct: 288 -------------HDPTSPLISIIDRQREELRGRVQLG-----------LGEWHSLFRRM 323 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L++ L +L F++ + + + E ++++ +++ +P Sbjct: 324 LEHWGWPARDGLDSLEFQQFDRLDNVFDDFESLASVRPEVALSEALNLLESVLNDTVFQP 383 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 K E ++ + +LG E+ L FD G P F+ +Q+ + TA+ Sbjct: 384 KTEATA-IQVLGPREATGLTFDAFWFCGARSTAVPGVPRLLGFIPAALQNQYHFPTADYA 442 Query: 681 IGQAA--HDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + E+ + S + L+ Q Sbjct: 443 SMLQKSEVTLQGFRAASIEFYASWYQFEDGVEQYPSPVFPSCSTPQDIPDYWLLRTSAQR 502 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 L+ P E + +++ P+ + RR + + Sbjct: 503 AEIPIDILEDDYGIP--------IDAEDGTSVGGSAILREQAECPFKAWVRRRIAVSAPE 554 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQIIDSHFEKENLPPH 851 + +RG L H ++ E+ + IN++ + +L++ ++D F + Sbjct: 555 PEQLGLSPIERGNLLHAVLYEVWGRIINRDQLLALSMDGLENLVRGVLDQIFGEHIHQDV 614 Query: 852 IDIIWRHLFH-------KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + ++ +L E + + ++ + + L DR Sbjct: 615 RRRVGAACLELEALCTYRVVLDWLLLERSRNGDFQVVSREDSRRLDLGGLTFSL--RVDR 672 Query: 905 IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 ID L SG + + DYK+G ++ DPQL A + K +L + Sbjct: 673 IDRLASGEMLMIDYKSGGVGSASYWFGERPSDPQLPAYALSQDRVQGIAWARLKAGDLKF 732 Query: 963 IRLKQK---------FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 I L + K + + ++ E L + G + + Sbjct: 733 IALGGELGLNAEKPLSKQLAALGLPPETTWSQVLEGWRDALTNLAAEFGEG----YAAVD 788 Query: 1014 LSEKSNIQSEYDHLARVA 1031 ++ + + R+ Sbjct: 789 PQPRACDFCDLQGVCRIR 806 >gi|326389379|ref|ZP_08210947.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW 200] gi|325994742|gb|EGD53166.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW 200] Length = 1153 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 126/952 (13%), Positives = 266/952 (27%), Gaps = 150/952 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K ++++I ++ E E L + + + + + E L N Sbjct: 117 GFIKKVSEVITELKRFEVTPEKLLEITETIDNLGLREKLKDISLIYSKFEESL-HQNYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + E+ + I G TG P R++ + + + +D Sbjct: 176 QEDELTLLAE-KIEYSSQFEGAEFWIDGFTGFTPKQYRVIEKLLKKASRVNITLCMDTSN 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 +A +T T + + + +I E L + + S Sbjct: 235 ISAEIDTTDLFYTTKKTESKLLE---------ICQRNNISYEKPVNLNIGIPQRFKESEE 285 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 +S + + D+++ +A N E A + + + Sbjct: 286 LSFIEKHLFSYPYKVYLKE----------TEDISIFKAVNVYSEVEETARDIIRLVRDEG 335 Query: 387 ---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + T D + +K +++GI I I + +TSL + K Sbjct: 336 FRYSDIVVATRDLNRYHKLIKAIFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWS 395 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K + L + K L R Sbjct: 396 YESVFRYLKTGFTDLEKEDINLIENYVLANGIKGDKWKEEVWNYRLN----YRFDRLSIE 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCI------TPLVTYKTNKNSTCGNLSISDWTKL 556 R++E +++A L D + T I + Sbjct: 452 EDEKEIIERVNEIKRKIATPLQDFYKKFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEK 511 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 E + + + + +++E K A ++ I++ D Sbjct: 512 FKE--------EKEYDTANQYAQVWDIVVDVLDQLVEVMGEEKVTAEQFAKILSIGFDEY 563 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670 + + + + N L + G+N+G++P + + L+ + Sbjct: 564 QIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVNDGIFPASLFEEGILTDGDREILASHN 623 Query: 671 -DLNLKTAEKYIGQAAHDFEMANG-------------------TRHLIYTR--------- 701 +L+ T K + + +I +R Sbjct: 624 VELDRDTKTKIFEEQFLVYTALTSTSKFLKISYPIADHEGKSMRPSIIISRLKKIFPKIK 683 Query: 702 ----------SLRENNIPTIASR---------------------WLQRLLVLGGTDFFDN 730 + N + S WL ++ + Sbjct: 684 QFSNVVEMDTAEENLNRVSTPSPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKP 743 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 R L +T ++ L +S S +++ P+A + + Sbjct: 744 KLTRALEGLYYTNQVKKVPAHK-------VKKLYGDEMYFSVSRLEKYAACPFAYFVQYG 796 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSHF 843 LK F +P D GT HN++ K + + + I+D Sbjct: 797 LKAKERKIFSFEPP--DLGTFMHNVLDRFSKALEEEGLTWQDIDREWCDEAVAIIVDDMI 854 Query: 844 EK---ENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MA 890 +K L + ++ + ++ E +SS + + + Sbjct: 855 QKIPGYILNSSPRYKYLAERLKRVLSNAVWVVSEHIKRSSFVPLDHEVAFGDNQKYPPIK 914 Query: 891 I---ESIGIHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 I I+L G DR+D+ ++ I DYK+G ++ QL + A Sbjct: 915 IVLSNGEEINLIGRIDRVDIFEKEDEAYIRIIDYKSGNKTLDLSDVFYGLELQLLIYLDA 974 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + + A +FY ++ D I K S +EL + K L Sbjct: 975 ILESAINGNTNLNPAGIFYFKID-----DPIIKADKDISDEELQMQIFKKLR 1021 >gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] Length = 1062 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 118/1046 (11%), Positives = 261/1046 (24%), Gaps = 124/1046 (11%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 T+VE + + + ++RA ELR ++ P+ ++ Sbjct: 55 TIVEAVAARIDGGVDPEQILVLTFSRRAAAELRDRVAARVA-RTIREPLARTFHSYAYGV 113 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 LL P RLL A + L + + Sbjct: 114 LRRAALLRGEAPP------RLLTAAEQDALVAELLRGDLAGEGAVRWPESLLPALTTAGF 167 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF---LKIASKYWTERLVELNAS 205 L +++ E L A E WL AA F + + + T + + Sbjct: 168 RGELRELLLRATERGVDAELLAAWSRETGNEAWLHAAAFQEQYEAVTAFSTAGGGDASGY 227 Query: 206 SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 P A + + + + + + PA L+ +A + Sbjct: 228 DPAELVRAAIAELEDDPALLRAERERARWLFVDEYQDTDPAQVELLQLLAGGGGDLV--V 285 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + + + L + R L +VS + Sbjct: 286 VGDPDQAVYTFRGAEPRGIVEFPERFRTVS----GRPAPRLSLGVCRRSGPALLDVSRRV 341 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + + EA +A LR Sbjct: 342 AE---------------ALPGPWEHRRLAAVEGAEEGAAEVHVFGSASVEAAYVADTLRR 386 Query: 381 SLDENKKKS---ALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNA 436 + + A++ ++ LT G+ +++ + +PL+ + L + L A Sbjct: 387 AHLVDGVPWSGMAVVVRTALAIGPLRRALTSAGVPVEVGTDDLPLAAQPAVAPLLAALGA 446 Query: 437 IFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 + + P L + + V + + D + + + Sbjct: 447 LLPRPGAEPGTLALDEPGAEALLTSALGGATVLDLRRLRRAVRIAQARRGVDADERGAPL 506 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + + +P +R A + D + L + ++ S Sbjct: 507 ATALTDEGLLEELPDAVAR-------PARRVADVLAAGRVALARDGSAEDVLWAMWQRSG 559 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 +L ++ F + + + + + Sbjct: 560 LAGRWARASAAGGAAGAVADRDLDAVVALFDAAAGFVDRLPSATVGAFV----EHLSAQE 615 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD- 671 + G + + + +L S+ L +D + + G+ EG+WP + L + + Sbjct: 616 LPGVGGAGRESATDAVRLLTAHASKGLEWDVVCVAGVQEGIWPDLRDRGTLLGTEVLVER 675 Query: 672 ------LNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLL 720 L + + + F +A +L + ASR+L ++ Sbjct: 676 VAGIDGAVLDRRVQMLAEERRLFYVACTRARRRLVVTAVEGALDGPDAGATASRFLDLVV 735 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------------------- 758 R +L P + + Sbjct: 736 PPPDDGRPLTPLPRSLTLPALVAELRRAVSDPQTEPARRSAAAAVLRRLADEGVPGASPA 795 Query: 759 -----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 + + S I+ P + Sbjct: 796 DWWGLAPLSDDAPLVPDGEAVRVRPSAIETFQRCPLKWVLGAVGAEASPDAT------RT 849 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 G+ H + ++ + P + + F Sbjct: 850 VGSAVHAVAQQVAEGLPAAGAPAALAEELD----QLDLGPGWADQRQRIAAR--DMLDRF 903 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 L + E + + + + G DR++ +G + + D KTG + Sbjct: 904 LRWHAA--NGRELLAAEADFDVTVGRA--RIRGQVDRLERDGAGRLVVIDLKTGRS-AAR 958 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 QL+ A+ AG+F + +++ K D A Sbjct: 959 DIDTHG--QLAAYQVAVAAGAFGEHGEA-PGGAALLQVGSGSKAKEQAQDP--LPAGVPV 1013 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLR 1013 ++ E+V + +G +R Sbjct: 1014 GETWAG--ELVAQVGDGMGAGTFEVR 1037 >gi|254831296|ref|ZP_05235951.1| hypothetical protein Lmon1_08057 [Listeria monocytogenes 10403S] Length = 1157 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESTMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDGAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|254826844|ref|ZP_05231531.1| addB [Listeria monocytogenes FSL N3-165] gi|258599222|gb|EEW12547.1| addB [Listeria monocytogenes FSL N3-165] Length = 1157 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESTMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLKEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDGAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|291525356|emb|CBK90943.1| ATP-dependent nuclease, subunit B [Eubacterium rectale DSM 17629] Length = 1156 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 123/1053 (11%), Positives = 294/1053 (27%), Gaps = 175/1053 (16%) Query: 48 TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + VP T+R + ++++ K+ + + S + F + + + Sbjct: 35 LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + L L +L +KL I ++L +S + ++ + Sbjct: 86 -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131 Query: 162 EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 E+L + + + + + + + + + + + ++ AE Sbjct: 132 YNISPEELGRYIASGMLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I TG P +L+ + V +DC I+ + + Sbjct: 190 ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 K L + + ++ Y + SF Sbjct: 248 DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 + + + +K + + + ++E IA + + + A++T D N Sbjct: 290 EQQLFRKRRCSFKKAPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349 Query: 398 LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + V+ ++ I I A + + S+ + + A+ ++ ++ Sbjct: 350 IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFSE 409 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 E + + + + K+ D Sbjct: 410 LLDSEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569 EL ++I++ + P+ ++K ST + ++ + + LD Sbjct: 449 IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + + K + LF K + +A E+ I+ +D V T+ Sbjct: 509 DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683 I +RL N + G+N+G+ PK + +S+ + L A + Sbjct: 569 IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628 Query: 684 AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734 + +R L + + S + L + + + L Sbjct: 629 QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765 L + +A Sbjct: 689 SSRQSALDYLLSNEVDDRWCEIAAAVMLYDASVSDAGDGNEVDDKEFTQKNSVERLINAR 748 Query: 766 -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + S + +Q YA + L+L + Sbjct: 749 FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806 Query: 807 DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856 D G ++H + KK ++T + L + I+ ++ D Sbjct: 807 DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866 Query: 857 -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRID-L 907 + +F + + + + S +++ + + + G DR D Sbjct: 867 SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924 Query: 908 LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962 G + + DYK+G QL++ A+ + + + Y Sbjct: 925 TDEGRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + S +E+++ LK L Sbjct: 985 YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017 >gi|304436812|ref|ZP_07396778.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370184|gb|EFM23843.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1198 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 115/1008 (11%), Positives = 267/1008 (26%), Gaps = 146/1008 (14%) Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 L P +S+I R + L ++L +L + ++ Sbjct: 71 FRRLARQVLLETGGEHLPRISDIGRRILLKDILLQHSRELSVFQRSVHKR---------- 120 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L I ++ + + L + G L+A ++A+ Sbjct: 121 ---GFTEVLGHTIAELKRDRLSSDHLRQAADVSTGEHARLSAKLTELATIMDELAARMEG 177 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + ++ + A+ + + G P + + + V +D Sbjct: 178 RLTDHTDRMERLAAQLIDAPFLRGAELWVDGFDFFNPQELAVFRALFRVVDTVHVSLTMD 237 Query: 264 -CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 T ++ + E + +Y T + Sbjct: 238 GRDDGTHVFTNLPENIYDTGLFARSYQTMHL---------------LQQIFTEEQPSAQI 282 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 ++ L + ++EA N R E + A + Sbjct: 283 GIRLMPVQHRARTEGLRLLEAQLFGHGHITPAKDDSIRIVEAANPRLEVETAAADILRLA 342 Query: 383 DENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 +N ++ A++ D +L + GI + P + + +L ++ + Sbjct: 343 RDNGYRYREIAVLMRDVDLYGDLLSLAFADCGIPFYLDVKRPSAHHPLAELLRAVAQMTW 402 Query: 439 KLNDFMAIATLVKH---PLAKFGFPE------KYLSRAKNALELVALRGNKNSYDIMDLK 489 + + + ++ PL E A + LE L S Sbjct: 403 RGWAYETVFRALRTGFFPLLGTEEDEDAPPLCADWQEAVDRLENYCLAYGIRSESQWTAT 462 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL- 548 + + +++ L I + ++ L + ST Sbjct: 463 EPWDFVQRR-VTEHELHLDEEEERLREEQWLDHLRRRIAEPLSLLTGHLRRHESTARART 521 Query: 549 -SISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 ++ D+ E R + + +LF +++E ++ Sbjct: 522 KALYDFLDELCVPQTLRLWSETADREGRLADAAAHRQIWSSCMALFDQLVEVRGDDPLSS 581 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ ++++ +D ++ + + ++ + + + G N G+ P+ + Sbjct: 582 RDYEELLSDGLDAMSIALIPPGLDHVTVASFDQNSIAGARAVFVIGANAGIMPRAGTTSG 641 Query: 663 FLSRVM----------------QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE- 705 S + +T + ++ + +L + +L Sbjct: 642 VFSDTELLFIGESLQTAGADSGHTVFGGRTQQSFLERYQLYRGFTEARDYLWVSYALSSV 701 Query: 706 NNIPTIASRWLQRLL-----------VLGGTDFFDNLKKRGQCYLDWTRKLDY------- 747 + S + RL L G D L T L Sbjct: 702 DGSTLAPSPLIARLRRISSSFFSIPLALAGRDDPLLLSAPYPALSHLTAALREKKERGEM 761 Query: 748 -------------------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 + + + S + ++ Sbjct: 762 PAMWGDVYNWMLQDAVMQPLLRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLE 821 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINH 833 P+ +A L+L + + D GTL H I+ E ++ + Sbjct: 822 TFRQCPFRHFAMYGLRLQQRD--RYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALA 879 Query: 834 LMKQIIDSHFEKENLPPH-----IDIIWRHLFHKI---SHSFLEHE--EKIQSSIEKIFV 883 + I+ ++ H +RH +I + ++H SS Sbjct: 880 EAPEKIEELLQELIPQVHSTVLMSRASYRHRIERIRCTAQQTIQHLTSWAAASSFHPYGF 939 Query: 884 NIPAKMA-----------IESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNP-KKETAQ 930 I + + + L G DR+D++ + DYKTG + Sbjct: 940 EISFGRRNDGVRLADFPLADGMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPEIR 999 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + QL L ++ S A + Y +K + D+ Sbjct: 1000 HGLKMQLLLYLFVVR--SILDTGEAFPAGMLYAPVKNPIVPCNVRLDE 1045 >gi|315658705|ref|ZP_07911575.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis M23590] gi|315496336|gb|EFU84661.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis M23590] Length = 1155 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 114/930 (12%), Positives = 248/930 (26%), Gaps = 139/930 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194 L L S A ++ LA+ I + EDL +L + + + + Sbjct: 107 LKLYHSQAKYYGFSEKLAEQIQDFKKYVVTPEDLQSLVTQHSLPTRMQHKLEDIALIYNA 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + ++ ++ + I I G ++ + + Sbjct: 167 FERQIA--GRYITSEDKLKQFINVMPQSQWLKRAEIYIDGFHNFSSLEYDIIKHLVKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 VL D S S L ++ L+I Sbjct: 225 KVTVLLTTD--------GNTDPFSLFRKPSEVLQH------LEEIAAELNITLNRKHFNQ 270 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + + + + + ++EA + REE + Sbjct: 271 QHRFTNHDLVHLEQEFDALQINPIQQQ---------------GHIQILEAASIREEVNEV 315 Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + E + A++ D + A + L +F I I ++ ++ Sbjct: 316 ARQIIKATREQHLRYQDIAILYRDESYAYLLASILPQFDIPFHIDIKKSMTHHPIMEMVR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ + A+ L K + + + LE L D Sbjct: 376 SLIEVVRTNWSTDAMLRLFKTDILTYQIKNSSYL--IDLLENFVLERGITGKRWFDESRF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH----ILQCITPLVTYKTNKNSTCGN 547 ++ H + + + E V H Q + T + + Sbjct: 434 QIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVVHKILYFEQAMNDAHTVIDYATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + D HR ++ + + ++ + + + + Sbjct: 494 MEYFELPNQLMTIRDTLEAD-HRYEEAEEIDQIWNGIIQILDDLVTVFGTTEMSLQRFNE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ ++ + + I +++ N + + G+N+GV P+ A +S Sbjct: 553 VLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKAKVFMVGMNDGVIPQPIASTSLISDE 612 Query: 668 MQSDLNLKTAEK--------YIGQAAHDFEMANGT-RHLIYTRSLRENNI-PTIASRWLQ 717 + +T + + +A + + + ++ SL N+ S +L Sbjct: 613 EKKFFETQTHIELSPTSDVLQMDEAFVCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLS 672 Query: 718 RLLVL----------------------GGTDFFDNLKKRGQCYLD--------------- 740 ++ L G +L + + +LD Sbjct: 673 QIKQLYTNMQIDNLNYVHAQQPLLLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVM 732 Query: 741 ------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L Y P S S + P+ YA Sbjct: 733 RDDAQLNDGLDYLLTSLTYDNHTVQLSDPLAQQLYGKAIN-ASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 L+L+ K D G +FH+++ + + +KQ+ E+ Sbjct: 792 HGLRLNER--TKYQLQNFDLGDIFHSVLKYISDRVNGDFKHLNAKTIKQLTSEALEEILP 849 Query: 849 PPHIDII--------WRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------- 888 +++ I + L + S + + Sbjct: 850 KVQFNLLNSTAYYRYLSQRIGAIIETTLGALKYQSSYSKFKPQRFETGFRRKPHQDDLMA 909 Query: 889 ---MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSL 939 + I I++ G DRID I DYK+ K + + Q+ Sbjct: 910 ESLQTTQGIPINIRGQIDRIDTYTEDDQSYVNIIDYKSSKESAKLDLKKVYYGLQMQMMT 969 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL 965 + + S K L Y + Sbjct: 970 YMDIVLQNHERLGLSDT--VKPGGLLYFHV 997 >gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] Length = 1059 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 114/1041 (10%), Positives = 269/1041 (25%), Gaps = 167/1041 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEIT--GKKSTILPIIKSLGDVVE------------EKFTA 91 V T++A Q+L + S ++P G+V E + + Sbjct: 67 QVLGLTFTRKAAQQLEQRIRRQLIKLRDSGLIP---PGGEVAEALENIAPKVATYDSYAG 123 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 +L+ Y L PV R++ A + + + + L + L+ + +++ Sbjct: 124 ELVREYGLLVPVEPTARIITEAERYSLAYDVVRNYTGQLEDDRALATITET--LLKFSQD 181 Query: 152 LADIIDI---IETEEKKW-EDLHALKNEK--YGMWWLLAADFLK---------IASKYWT 196 + + + I + + D+ L + + +++ + Sbjct: 182 IDNGLKDTSHIAEHARDFRADIDNLDKSQKNGPEYSQKLLEYIHTQERRVQYVPLLEALK 241 Query: 197 ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E + R +H +++ + A L+ ++ Sbjct: 242 KEQSERQVITFGEQMAVAARVARDHPVVGKQQSQRYKVVMLDEYQDTSYAQRVLLRSLFG 301 Query: 252 HPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 V D W T ++ + + +L Sbjct: 302 GDQEDLSVTAVGDPMQAIYGWRGATSENLTAFVEDFPVAPGTPAPKDQLTISWRNP---- 357 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S + + + ++ K ++ L D+E E Sbjct: 358 -------------SGALDLANSVAEGVFEGVERPVDELSAAPHKGEGEIQLAYFDSEARE 404 Query: 371 AISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +A L+ D+ + +A++ + + L + G+ +I L Sbjct: 405 REFVAEYLKDQWDKREGDTFSAAVLVRINRHSAPIAAALDKAGVPNEIIGLGGLLWQPEI 464 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L ++ + + D A ++ P+ G + ++ A MD Sbjct: 465 QDLVAIATMLVRPEDLPAAVRVLAGPICGLGISDIQALASRLRNLAGAREERLRWEPGMD 524 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + ++ + L + L + Sbjct: 525 PEEYLRAQLEDVTAEEPDQRV------GLADALADLGERDRYTPQGLARMEEVSAKLRHL 578 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWI 606 + S L L R G T F+ I+ +++ Sbjct: 579 RTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALLDYF 638 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT-----AKN 661 + DG + + + I+ +++ L ++ + + + + + Sbjct: 639 ALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLSRID 698 Query: 662 PFLSRVMQSDLNLKTAEK-----------------YIGQAAHDFEMANGTRHLIYT---- 700 ++ ++ ++A F +A T Sbjct: 699 KVPGDDDYIEVPEDAEKRSDFHNACEEFKKADSAIKAEESARLFYVALTRTESTLTVTGS 758 Query: 701 -RSLRENNIPTIASRWLQRL---------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + +L+RL + ++ + + Sbjct: 759 GTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDYGESAQFPALQASPEAVAG 818 Query: 751 QPHYKRPKPFPPLEAQ------------------------------PRTYSFSEIKQLIN 780 P ++ P + S++ L Sbjct: 819 ADMVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVALRA 878 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 DP ARR + RGT FH + + E+ Sbjct: 879 DPLQF-ARRQRRPVPFKPNSY----AKRGTAFHAWLEDRFGSPALLGEEEL--------- 924 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 P ID ++ +FL E + + V P ++ I + G Sbjct: 925 ---------PGIDEPEDFDLEELKEAFLNSEW---AERQPEHVEAPFEITIGEA--VVRG 970 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 D + L+ G + D+KTG P+ E QL++ A A + I + Sbjct: 971 RMDAVFRLEDGTWMVVDWKTGRPPQGEAMDAAKI-QLAVYAEAWRR-----IHGGEKIRA 1024 Query: 961 FYIRLKQKFKIDCITNDKKKY 981 + + + + + + Sbjct: 1025 AFYYVHDGYTFEPARLPRGEE 1045 >gi|319891942|ref|YP_004148817.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317161638|gb|ADV05181.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius HKU10-03] Length = 1154 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 111/993 (11%), Positives = 272/993 (27%), Gaps = 145/993 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKI 190 ++ L L S + + + + I E E + + + + + + Sbjct: 102 AQTELKLYRSQVGYMGFSTKVREQIQDFEKYAVTPEMVSDMATDAHLEPRTRHKLHDIGL 161 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + R+ ++ + + I I G +L+ + Sbjct: 162 IYEKLQARMSSEYITAEAMMNRLV--TLIPQSKWLKQAEIYIDGFHNFSTQEYQLIEALV 219 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + K + L E Sbjct: 220 KHVKSVTFALTTNGDQDA------------------------LSMFRKPSESLRHFEEMA 255 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 R+G R ++ + + + + ++EA REE Sbjct: 256 HRVGQPL----ERLYFYTQHRFKAPSLTTLEQQFDALQPESHHTADEGIRILEAPTTREE 311 Query: 371 AISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +A A+ + E + A++ D + + L ++ I +I ++ Sbjct: 312 VNEVARAILRDVREKQYRYQDIAILYRDPSYVYLLDAILPQYDIPYNIDVKKSMTHHPIM 371 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 +L +L+ + F + L+K + P+ + LE A+ + +D Sbjct: 372 EMLRALIEVLQTEWQFEPLMRLLKTNVLTQMMPDSAYL--VDLLENFAIERGIHGKRWLD 429 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + L++ + P +EE+ ++D + L+ ++ Sbjct: 430 PQYFELNQFRKMGIRPNDPL-----TEEETATFERVIDLKTKVFNQLLNFEEKLAQGSNA 484 Query: 548 LSIS----------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + + +T + + + ++ L + ++ Sbjct: 485 KAFATYFYEAMEGFELPNQLMTQRDMLDE-QGQHEAAEEIDQIWNGLIRVLDDVVTVFGD 543 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 +++++ ++ + + I +++ N + + G+N+GV P+ Sbjct: 544 RDMTLTRFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQA 603 Query: 658 TAKNPFLSRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-N 707 + +S + T++ A F M T + ++ SL + Sbjct: 604 INGSGLISDNEKKAFETYAGVQLSPTSDILQMDEAFVCYFAMTRATETVTFSYSLMDASG 663 Query: 708 IPTIASRWLQRL----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 S +L + L + ++ + + Sbjct: 664 AEREKSPFLNDIRQMFRNLDIIQLTHQHARDTLSLIEHPHQTKVHLFEAFKTWLDEGLIS 723 Query: 764 EAQPRTYSFSEIKQLIND------------------------------------------ 781 + TY+ +ND Sbjct: 724 DTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGKAIHASVSRFEGYQ 783 Query: 782 --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 P+ Y L+L+ K D GT+FH+++ + +K + + Q+ Sbjct: 784 NCPFKHYTSHGLRLNER--TKYQLQNFDLGTIFHDVLKYIAEKVEGRFNQLTELQIAQLT 841 Query: 840 DSHFEKENLPPHIDII--------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK- 888 + E +++ I + + + S + I + Sbjct: 842 NDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTSHSQFKPIAFEKSFRK 901 Query: 889 -------------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKKET---A 929 + + I++ G DRID ++ I DYK+ + Sbjct: 902 SPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIIDYKSSSSSASLDLVKV 961 Query: 930 QKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + Q+ ++ K Y+ + Q +D + DE Sbjct: 962 YYGLQMQMMTYMDIALQNKERLGLVEEVKPGGFLYMYVHQFRDEKRAWSDIEVAKLDEAF 1021 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 KS + L ++ + + + L KS+I Sbjct: 1022 LKSYQ-LQGLLNNDVDVLEAYDERLTAGFKSDI 1053 >gi|47097166|ref|ZP_00234732.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a F6854] gi|254899031|ref|ZP_05258955.1| hypothetical protein LmonJ_04444 [Listeria monocytogenes J0161] gi|254937155|ref|ZP_05268852.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|47014471|gb|EAL05438.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a F6854] gi|258609759|gb|EEW22367.1| ATP-dependent nuclease [Listeria monocytogenes F6900] Length = 1157 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + +LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSDLANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISVLLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|212218646|ref|YP_002305433.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154] gi|212012908|gb|ACJ20288.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154] Length = 872 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 214/696 (30%), Gaps = 76/696 (10%) Query: 362 IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416 + N E ++A E +K + D R L L + +IS Sbjct: 226 VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 285 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ + I L D M + T+ + + Sbjct: 286 VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 332 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534 L + + ++ + P + + + L + Sbjct: 333 -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 378 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L S W + L + R L + +++ + + L Sbjct: 379 ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 432 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ W Sbjct: 433 TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 492 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711 P + NPFL +Q + A +I + L+E +I Sbjct: 493 PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 552 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 S ++ + D + + L + + E +P + Sbjct: 553 TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 606 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 607 SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 666 Query: 831 -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 667 SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 725 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941 + I + L DRID I DYKTG + +L QL L A Sbjct: 726 TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 779 Query: 942 AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + +++++ +K+ I +KF + +EL + L + Sbjct: 780 YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 838 Query: 999 TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 +G+ + + S+ + L R+ E Sbjct: 839 VDFSSGK----ADVDPLDSKTVCKVCHLNSLCRIGE 870 >gi|291527057|emb|CBK92643.1| ATP-dependent nuclease, subunit B [Eubacterium rectale M104/1] Length = 1156 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 123/1053 (11%), Positives = 294/1053 (27%), Gaps = 175/1053 (16%) Query: 48 TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + VP T+R + ++++ K+ + + S + F + + + Sbjct: 35 LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + L L +L +KL I ++L +S + ++ + Sbjct: 86 -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131 Query: 162 EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 E+L + + + + + + + + + + + + ++ AE Sbjct: 132 YNISPEELGRYIASGRLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I TG P +L+ + V +DC I+ + + Sbjct: 190 ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 K L + + ++ Y + SF Sbjct: 248 DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 + + +K + + + ++E IA + + + A++T D N Sbjct: 290 EQQFFRKRRCSFKKVPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349 Query: 398 LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + V+ ++ I I A + + S+ + + A+ ++ ++ Sbjct: 350 IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFSE 409 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 E + + + + K+ D Sbjct: 410 LLDSEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569 EL ++I++ + P+ ++K ST + ++ + + LD Sbjct: 449 IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + + K + LF K + +A E+ I+ +D V T+ Sbjct: 509 DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683 I +RL N + G+N+G+ PK + +S+ + L A + Sbjct: 569 IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628 Query: 684 AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734 + +R L + + S + L + + + L Sbjct: 629 QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765 L + +A Sbjct: 689 SSRQSALDYLLSNEVDDRWCEIAAAVMLYDASVSDAGDGNEVDDKEFTQKNSVERLINAR 748 Query: 766 -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + S + +Q YA + L+L + Sbjct: 749 FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806 Query: 807 DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856 D G ++H + KK ++T + L + I+ ++ D Sbjct: 807 DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866 Query: 857 -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRID-L 907 + +F + + + + S +++ + + + G DR D Sbjct: 867 SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924 Query: 908 LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962 G + + DYK+G QL++ A+ + + + Y Sbjct: 925 TDEGRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + S +E+++ LK L Sbjct: 985 YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017 >gi|117924279|ref|YP_864896.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp. MC-1] gi|117608035|gb|ABK43490.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp. MC-1] Length = 916 Score = 185 bits (469), Expect = 4e-44, Method: Composition-based stats. Identities = 94/704 (13%), Positives = 202/704 (28%), Gaps = 80/704 (11%) Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL--------------ELTRF 409 ++ +E +++A +R L+ + ++ + + Sbjct: 241 FADQEQELLAMARWVRQQLEAGVRNIGVVAPNLPEIKSGLARTLAAVLTPGFDRPHSPPQ 300 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + ++IS+G L+ T + LL+ + + A A L++ P G + A Sbjct: 301 PLPVNISSGSALAHTPVVADALLLLHFLQEPLLPAAWAALLRSPYFSGGEKGRDSRGAL- 359 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + L + R+ + ++ EL L Sbjct: 360 -------EAKLRALGCFSLNVTQMCRLLETHKRSENSWYERINRLAQLELDKAL------ 406 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + W L+ + + + + L + Sbjct: 407 -------------------PLGRWAARVSRWLELMGWPGTDRALDSREYQAVSAWRDLLT 447 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + A E + + + + + ++G LES FD L L + Sbjct: 448 QWAALEHTAPALPWESALGLLQGMALRRDFQPDGGEAPVRVMGVLESAGERFDALWLLDM 507 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMAN-GTRHLIYTRSLREN 706 + WP NPFL +Q + +AE+ + A + + ++ + + Sbjct: 508 RDEQWPPAPMPNPFLPLALQRQWGMPRASAERELTFARQITQRLRQAAKTVVVSWCRSDG 567 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + + S L + + P PP Sbjct: 568 DRDFLISPLWSDLP---LAPVTASPPDYPLDAQLIAAAGRWQAYDGAASIPLTCPPQSV- 623 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + +K + P+ +A L+ + D RGTL H ++ + K ++ Sbjct: 624 -LPGGAALVKNQASCPFKAFALHRLQAKGLEVTVPGADDRRRGTLAHVMLEKFWKTVQSE 682 Query: 827 NTPEINHLMKQIIDSHFEKENLPP------HIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + ++ + + ++ +++ E Sbjct: 683 ANLRQARIAQRQQWVAQAVAAALQKWTVQGDFAGLEQQRLQQLMARWIDVELARAPGFVV 742 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSL 939 P K+AI + L DR+D L G + DYK+G K ++ DPQL L Sbjct: 743 EVAEDPQKLAIAGATLEL--RLDRLDRLADGRHLLIDYKSGQPTTKDWQGPRMSDPQLPL 800 Query: 940 EAAALKAGSFSQIDCRKVANLF-------YIRLKQKFKI-------DCITNDKKKYSADE 985 A + A+L +I + ++ ++ + + + S Sbjct: 801 YTLLSHAQGALHVAGLAFASLKANKGDKPWIGMGEEAELLPGLKAWKPVGEESQAQSWPA 860 Query: 986 LSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + + L E+V G +K + L R Sbjct: 861 QLSEWRQWLTELVEAFMAGSA--AVDPHEGDKGCGYCDLSPLCR 902 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 53/608 (8%), Positives = 137/608 (22%), Gaps = 47/608 (7%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTIL---PIIKSLGDVVEEKFTADLLLSYNLNP 101 A + +R + LR E + I P + + G +E + + + + Sbjct: 30 AGAVVVTVNRRLARWLRHRHGEAKMAQGLIAWATPDLLAWGSWLERCWR-QAVATAAVQG 88 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + RL+ + LIW + SP A L + Sbjct: 89 KARELPRLMNGEQERLIWSAVVRQSEVGQSLLSPHGAAEGARQAWVL----------LAQ 138 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 E L + L+ + + +RL L+ A Sbjct: 139 WGVTQELLRQQPEPE-------TQVLLQWI-EAYQQRLQREGLLDAQQLSSQLLSRAACW 190 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA------------ 269 +I+AG P + +A + + P + Sbjct: 191 Q---PPRQLIVAGFDDVSPQMQHFLQVLAGEHGVMVNQWLPEPLQPHSMQRWGFADQEQE 247 Query: 270 -------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + + NI L L + Sbjct: 248 LLAMARWVRQQLEAGVRNIGVVAPNLPEIKSGLARTLAAVLTPGFDRPHSPPQPLPVNIS 307 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 ++ + + D + + + R+ ++ LR Sbjct: 308 SGSALAHTPVVADALLLLHFLQEPLLPAAWAALLRSPYFSGGEKGRDSRGALEAKLRALG 367 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + + + R R + L ++ ++ L + Sbjct: 368 CFSLNVTQMCRLLETHKRSENSWYERINRLAQLELDKALPLGRWAARVSRWLELMGWPGT 427 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 A+ + ++ + + ++ + M L+ Sbjct: 428 DRALDSREYQAVSAWRDLLTQWAALEHTAPALPWESALGLLQGMALRRDFQPDGGEAPVR 487 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQC--ITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + L + + P + + S Sbjct: 488 VMGVLESAGERFDALWLLDMRDEQWPPAPMPNPFLPLALQRQWGMPRASAERELTFARQI 547 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 Q + + + + + + + A+ ++ + +LI Sbjct: 548 TQRLRQAAKTVVVSWCRSDGDRDFLISPLWSDLPLAPVTASPPDYP-LDAQLIAAAGRWQ 606 Query: 621 KIEKSSTL 628 + ++++ Sbjct: 607 AYDGAASI 614 >gi|315304459|ref|ZP_07874742.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596] gi|313627173|gb|EFR96023.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596] Length = 1157 Score = 185 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 127/967 (13%), Positives = 283/967 (29%), Gaps = 139/967 (14%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE DL Sbjct: 97 AALDKKEELKVFSRATSRKGFYSELANLFKEMKQEEISINDLEESART-LPTSVTNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + L+ + III G ++ Sbjct: 156 ISLIYQKYEELLT--GKFLENEDYLRLLAEKITESDYLNDTEIIIDGFNSFSKQELTVIE 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + + E S TS+ +L ++ +I Sbjct: 214 RLMQKCDKVTVSLTLNV---PNIQDGLEEYSMFKTSTEIYL------ALLEIAKLNNIDI 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K L ++ ++ + +++++ +A+N Sbjct: 265 EEGKLLTENKRAKAASLAFLTNTWGQNKFAAFEGE-------------ATNLSIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + K A++T + + + + + I I I ++ Sbjct: 312 RAEIEGIAREIRKLTLNGYSYKDIAILTRNLGDYDVLAETVMEAYDIPIFIDKKREMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-YLSRAKNALELVALRGNKNSY 483 + S L+AI + I VK E + R + LE L + Sbjct: 372 PFVEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDIMEEAADMRRKSDILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + R + +P ++E+ ++ + + + PL T + N + Sbjct: 432 WKWQKEGDWIYRKIRGLSTNVLPQ-----TDEELSTQNVINEMRNRIVIPLSTLEMNLSK 486 Query: 544 TCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + + V D E+ ++S+L + +E Sbjct: 487 ASTGQEFALALYHYIEQVQAVEHLESWRRVAEDNGYLELAREHEQAWNSISALLDEFVEV 546 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + +I+I+ +D + + ++LL + G+N+GV Sbjct: 547 LGEESLDLTSFIEIVVTGLDALEFSLLPPALDQVVLSDMENAKLLEMKVIFAIGMNDGVM 606 Query: 655 PKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLREN 706 P LS + L +A+ IG+ + L + + Sbjct: 607 PLRQKDKGILSDQDRDFLREQNSNLKASAKNNIGEEDLLAYKIVSLPSDKLFLSYPAADE 666 Query: 707 NIPTIASR-----------------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL---- 745 + +L +L + ++ R T +L Sbjct: 667 EGKVLTESNYLRKIKGQFKNLSEAVYLTDPSLLNEEEQSSYIRSRQAVLGILTSQLQMYK 726 Query: 746 ----------------------DYTTKQP----------HYKRPKPFPPLEAQPRTYSFS 773 T KQ + L + S S Sbjct: 727 RGYPVSNVWWDAYNSYFDDKEESRTAKQVFSSLYYENKTAPLQETTAKGLFGENIHASVS 786 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--- 830 +++ + + +A+ LKL+ HF+ D G +FH + + + N Sbjct: 787 RMEKFFSCEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISAELKRNNMDWGSL 844 Query: 831 -------INHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEK 880 + L + + E L ++ +I + +E+ S+ Sbjct: 845 NIEECKHLAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRP 904 Query: 881 IFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KK 926 + + + + + + L G DRID+ + + I DYK+ + Sbjct: 905 VGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDVAEQDNRTFLRIIDYKSSAHDLAL 964 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + Q+ + + + + A + Y + + K+ + D+ Sbjct: 965 TEVYYGLALQMLTYLDIVVMNAQKMLGKNAEPAGVLYFHM-----HNQFVQSDKELTEDQ 1019 Query: 986 LSEKSLK 992 L+++ K Sbjct: 1020 LAKEVQK 1026 >gi|289551203|ref|YP_003472107.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis HKU09-01] gi|289180735|gb|ADC87980.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis HKU09-01] Length = 1155 Score = 185 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 110/929 (11%), Positives = 244/929 (26%), Gaps = 137/929 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKY 194 L L S A ++ LA+ I + EDL +L + + + + Sbjct: 107 LKLYHSQAKYYGFSEKLAEQIQDFKKYVVTPEDLQSLVTQHSLPTRMQHKLEDIALIYNA 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + ++ ++ + I I G ++ + + Sbjct: 167 FERQIA--GRYITSEDKLKQFINVMPQSQWLKRAEIYIDGFHNFSSLEYDIIKHLVKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 VL D S S L ++ L+I Sbjct: 225 KVTVLLTTD--------GNTDPFSLFRKPSEVLQH------LEEIAAELNITLNRKHFNQ 270 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + + + + + ++EA + REE + Sbjct: 271 QHRFTNHDLVHLEQEFDALQINPIQQQ---------------GHIQILEAASIREEVNEV 315 Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + E + A++ D + A + L +F I I ++ ++ Sbjct: 316 ARQIIKATREQHLRYQDIAILYRDESYAYLLASVLPQFDIPFHIDIKKSMTHHPIMEMVR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ + A+ L K + + + LE L D Sbjct: 376 SLIEVMRTNWSTDAMLRLFKTDILTYQIKNSSYL--IDLLENFVLERGITGKRWFDESRF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH----ILQCITPLVTYKTNKNSTCGN 547 ++ H + + + E V H Q + T + + Sbjct: 434 QIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVVHKILYFEQAMNDAHTVIDYATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + D HR ++ + + ++ + + + + Sbjct: 494 MEYFELPNQLMTIRDTLEAD-HRYEEAEEIDQIWNGIIQILDDLVTVFGTTEMSLQRFNE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ ++ + + I +++ N + + G+N+GV P+ A +S Sbjct: 553 VLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKAKVFMVGMNDGVIPQPIASTSLISDE 612 Query: 668 MQSDLNLKTAEK--------YIGQAAHDFEMANGT-RHLIYTRSLRENNI-PTIASRWLQ 717 + +T + + +A + + + ++ SL N+ S +L Sbjct: 613 EKKFFETQTHIELSPTSDVLQMDEAFVCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLS 672 Query: 718 RLLVL------------GGTDFFDNLKKRGQCYLDWTRKL-----DYTTKQPHYKRPKPF 760 ++ L ++ Q + L D + Sbjct: 673 QIKQLYTNMQIDNLNYVHAQQPLLLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVM 732 Query: 761 PPLEAQPRTY-------------------------------SFSEIKQLINDPYAVYARR 789 S S + P+ YA Sbjct: 733 RDDAQLNDGLDYLLTSLTYDNHTVQLSDQLAQQLYGKAINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 L+L+ K D G +FH+++ + + +KQ+ E+ Sbjct: 793 GLRLNER--TKYQLQNFDLGDIFHSVLKYISDRVNGDFKHLNAKTIKQLTSEALEEILPK 850 Query: 850 PHIDII--------WRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK----------- 888 +++ I + L + S + + Sbjct: 851 VQFNLLNSTAYYRYLSQRIGAIIETTLGALKYQSSYSKFKPQRFETGFRRKPHEDELMAE 910 Query: 889 --MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSLE 940 + I I++ G DRID I DYK+ K + + Q+ Sbjct: 911 SLQTTQGIPINIRGQIDRIDTYTEDDQSYVNIIDYKSSKESAKLDLKKVYYGLQMQMMTY 970 Query: 941 AAAL----KAGSFSQIDCRKVANLFYIRL 965 + + S K L Y + Sbjct: 971 MDIVLQNHERLGLSDT--VKPGGLLYFHV 997 >gi|323464967|gb|ADX77120.1| exonuclease RexB [Staphylococcus pseudintermedius ED99] Length = 1154 Score = 185 bits (468), Expect = 5e-44, Method: Composition-based stats. Identities = 112/993 (11%), Positives = 273/993 (27%), Gaps = 145/993 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKI 190 ++ L L S + + + + I E E + + + + + + Sbjct: 102 AQTELKLYRSQVGYMGFSTKVREQIQDFEKYAVTPEMVSDMATDAHLEPRTRHKLHDIGL 161 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + R+ ++ + + I I G +L+ + Sbjct: 162 IYEKLQARMSSEYITAEAMMDRLV--TLIPQSKWLKQAEIYIDGFHNFSTQEYQLIEALV 219 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + + K + L E Sbjct: 220 KHVKSVTLALTTNGDQDA------------------------LSMFRKPSESLRHFEEMA 255 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 R+G R ++ + + + + + ++EA REE Sbjct: 256 HRVGQPL----ERLYFHTQYRFKAPSLTVLEQQFDALQPESHHTADEGIRILEAPTTREE 311 Query: 371 AISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +A A+ + E + A++ D + + L ++ I +I ++ Sbjct: 312 VNEVARAILRDVREKQYRYQDIAILYRDPSYVYLLDAILPQYDIPYNIDVKKSMTHHPIM 371 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 +L +L+ + F + L+K + P+ + LE A+ +D Sbjct: 372 EMLRALIEVLRTEWQFEPLMRLLKTNVLTQMMPDSAYL--VHLLENFAIERGIYGKRWLD 429 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + L++ + P +EE+ ++D + L+ ++ Sbjct: 430 PQYFELNQFRKMGIQPNDPL-----TEEEAATFERVIDLKTKVFNQLLNFEEKLAQGSNA 484 Query: 548 LSIS----------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + + +T + + + ++ L + ++ Sbjct: 485 KAFATYFYEAMEGFELPNQLMTQRDMLDE-QGQHEAAEEIDQIWNGLIRVLDDVVTVFGD 543 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 +++++ ++ + + I +++ N + + G+N+GV P+ Sbjct: 544 RDMTLTRFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQA 603 Query: 658 TAKNPFLSRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-N 707 + +S + T++ A F M T + ++ SL + Sbjct: 604 INGSGLISDNEKKAFETFAGVQLSPTSDILQMDEAFVCYFAMTRATETVTFSYSLMDASG 663 Query: 708 IPTIASRWLQRL----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 S +L + L + ++ + + Sbjct: 664 AEREKSPFLNDVRQMFRNLDIIQLTHQHARDTLSLIEHPHQTKVHLFEAFKTWLDEGLIS 723 Query: 764 EAQPRTYSFSEIKQLIND------------------------------------------ 781 + TY+ +ND Sbjct: 724 DTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGKAIHASVSRFEGYQ 783 Query: 782 --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 P+ Y L+L+ K D GT+FH+++ + +K + + Q+ Sbjct: 784 NCPFKHYTSHGLRLNER--TKYQLQNFDLGTIFHDVLKYIAEKVEGRFNQLTELQIAQLT 841 Query: 840 DSHFEKENLPPHIDII--------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK- 888 + E +++ I + + + S + I + Sbjct: 842 NDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTSHSQFKPIAFEKSFRK 901 Query: 889 -------------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKKET---A 929 + + I++ G DRID ++ I DYK+ + Sbjct: 902 SPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIIDYKSSSSSASLDLVKV 961 Query: 930 QKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + Q+ ++ K Y+ + Q ND + DE Sbjct: 962 YYGLQMQMMTYMDIALQNKERLGLVEEVKPGGFLYMYVHQFRDEKRAWNDIEAAKLDEAF 1021 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 KS + L ++ + + + L KS+I Sbjct: 1022 LKSYQ-LQGLLNNDVDVLEAYDERLTAGFKSDI 1053 >gi|116671303|ref|YP_832236.1| UvrD/REP helicase [Arthrobacter sp. FB24] gi|116611412|gb|ABK04136.1| UvrD/REP helicase [Arthrobacter sp. FB24] Length = 1150 Score = 185 bits (468), Expect = 5e-44, Method: Composition-based stats. Identities = 131/1123 (11%), Positives = 285/1123 (25%), Gaps = 165/1123 (14%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + +I A + D L+P + + P++ A LR F + Sbjct: 78 APGTGKSTVLIEAAV-----RRAERDGLDPERM---LVLAPSRLAADSLRDRFTARLNRS 129 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + P ++ + P + LI + L Sbjct: 130 LSTTP-ARTWASYAFDLIRRAKAEGILPLPRPPRLL---SGPEQDLIIKELLEGHTLPGL 185 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + + + + D I + DL AL + W+ AA Sbjct: 186 ELPWPDDLGAALETRGFRQEVRQLFDRIIESGRTPADLVALAQQCNRPDWIAAAALYAEY 245 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 R+ E A P G A + + + I++ + PA L+ Sbjct: 246 RDVLDLRMPE--AFDPAGIITAARQIFQDAPEFLAAERERLQLILVDDIQEANPAVFELL 303 Query: 247 STVANHPNGAIVLP---------GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + +A + + G + + + + S + Sbjct: 304 ADIAAGKDAYVAFSPDTVVQGFRGARPDLTAELPHLLAPADATGRSPRDAAAPGT-ALER 362 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L + +V+ + R+ S L + Sbjct: 363 PLWRTHRHTPAVAQAWLSVAGRISQRAGSQSARRLESAEPPSNRPESGAVP------ACG 416 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINID 414 V + +E +A + + +++ A+I + +++ L GI + Sbjct: 417 GVEGHILPSPVQELRYVAQRILDAHLNDRRELGDIAVIVRNGGQLNQLQRHLAGHGIPVR 476 Query: 415 IS-AGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + A + + L A L+ + E R Sbjct: 477 VPVAESAVRDEVAVRPLLDAYAVALDPAVLTPEAAVALLTSRIGGATSIELRRLRQSLRR 536 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 E + G + S ++ L +AT +R+ E +E A Sbjct: 537 EEILGGGGRTSDALLVESLLEPGALATTGIEGRSARRVARMIEAGREAARA--------- 587 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 N+ ++ + T L + L + Sbjct: 588 -------PGANAETVLWALWNSTGLAARWTDAALAGGAAGARADRDLDAMMALFHTAERY 640 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + ++++ + +T+ + + + ++ + + +I+ GL E Sbjct: 641 VDQLPGSGPD-QFLEYLLSQELPMDTLAARAQLEDAVELMTPASAAGREWPVVIIAGLQE 699 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ-------------AAHDFEMANGTRHLI 698 GVWP + L + +D + + + R L+ Sbjct: 700 GVWPNTRLRGELLGSTLFADAVEHGVDHALQLGPISRLREIRYDELRSFSTAVSRARELL 759 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTD--FFDNLKKRGQCYLDWTRKLDYTTKQP---- 752 ++ + S +L + L +R +L + Sbjct: 760 ICTAVSSEDE--QPSSFLDYVAPLHPGQDRRTFTPVERPMTLRALVAELRQHAQLDGRFA 817 Query: 753 -------------HYKRPKPFPPLEAQPRTY------------------SFSEIKQLIND 781 P S S+++ + Sbjct: 818 AESVEAARVLARLAAAEPSVPGAHPDSWWGLAALSSEERIVPPGGTVFVSPSKVESVQKS 877 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P + + + GTL H I +L + + +++ Sbjct: 878 PLDWFIQAVGGEAATDF------ARSLGTLVHAIAQDLPDASGS-------EYLVELVRR 924 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIES------- 893 + + ++ + V ++ + Sbjct: 925 WPALGMKDNWEGKLDFQRAEGMVRKLAQYVLVMRSEGRSLVGVERDFEVKLPDIVDIPQP 984 Query: 894 --------------IGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLS 938 L G DR+++ G + I D KTG P K + PQL Sbjct: 985 ETLVPAATDAEPEVRSAVLRGQVDRLEIDAEGRLVIVDLKTGKRQPSKADLARH--PQLG 1042 Query: 939 LEAAALKAGSFSQIDCRK---------VANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 AA+ AG F++ + +L K I + +D Sbjct: 1043 AYQAAVVAGGFTEPGTAEGDLQSGDSQPGGAVLAQLGTSSKSPGIQVQEPLDGSDN---N 1099 Query: 990 SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 +++ L +G F + ++ + H R+ E Sbjct: 1100 WALDMVNDAARLMSGSV-FEARHDPAKSGHGG----HGCRLPE 1137 >gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] Length = 1004 Score = 185 bits (468), Expect = 5e-44, Method: Composition-based stats. Identities = 151/1086 (13%), Positives = 302/1086 (27%), Gaps = 201/1086 (18%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 ++ ++ R + P + +++A E+ + T I + Sbjct: 36 VITEKILHMIRENGAKPE---EILALTFSEKAAAEMAERLEKETDISRL---TIATFHSF 89 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 E ++L + +S L+ ++LI W K D E + P Sbjct: 90 CLEVLEDNVLDTG-----ISFNSGLISRTSQLI--WGMKSIDSFGFEAVEIGNNGPSVI- 141 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--------AADFLKIA--SK 193 +++ D I E ED+ EK +D LK+ + Sbjct: 142 ------ESIIDGISRFRDELISAEDIEEYLEEKNAQETSADEDIYLGKLSDLLKVYREYE 195 Query: 194 YWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + R L+ + + L R + + I++ + A L+ + + Sbjct: 196 NYKRREELLDFDDMIHETVRLFRNKPDIRRQYENRFRYILVDEFQDTNYAQLELIKLLTS 255 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + D + E + + + + Sbjct: 256 GH----LCIVGDDDQSIYRFRGACEGNVDEFAGHFKDH---------------------- 289 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + K + + + V + E NE EA Sbjct: 290 ----KKVVLEENYRNTGKILRVARQLIECADGSCTKNLRSNRGEGEPVIVAECSNENTEA 345 Query: 372 ISIAIALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A + + E + A++ R+ + L I + + Sbjct: 346 GYVADEIESLMGEGFLPGEIAILCRKRSECGKFHKILDSRNIPCEFTGDAEFFAIPVIKD 405 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 S L A+ L+R + + + ++ Sbjct: 406 AVSYLKAVANPA-----------------ESAIPLNRMMRQAGVSETAILEINTGAKQIR 448 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 V R E+ D I + ++ + Sbjct: 449 -------REGGKGDGVLEAMKRCGTEE--------DPDTIVIREVAENVDALSAARHKKT 493 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + + V + + + L E S + E G + + ++ Sbjct: 494 LPALVREIVLRTGKLYSKDREGVAALNRLYEIALEFSRINPSGEIGDLLDH-----LSLL 548 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L + S + I+ +S+ F + + L E +P N PF V Sbjct: 549 RDL--SGDFGVNEKTGSGVRIMTVHQSKGKEFSAVFVTDLAERRFPLNYRSKPFRVPVDL 606 Query: 670 SDLNLKTAEKYIGQ----AAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVL 722 S ++ + + L TR++R EN + S +L + L Sbjct: 607 SKSIRPGDDEKELYKQEERRLLYVAMTRAKEKLYLTRAIRYGENKNDSKPSVFLTEIDYL 666 Query: 723 ------------------------GGTD----------------FFDNLKKRGQC----Y 738 GG + + R Sbjct: 667 NNTDISIVSTDGGKNGKDNLISATGGPAEDPFSEENKLMKEAVAAIADKRYRSAVGKILA 726 Query: 739 LDWTRKLDY------------TTKQPHYKRPKPFPP-LEAQPRTYSFSEIKQLINDPYAV 785 L++ R LD ++P R KP P S S +K + P Sbjct: 727 LEYVRSLDEGKEFDNREFLNIPFEKPAVPRRKPEPLIKPGDGTRLSASALKLYDDCPLRF 786 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 +IL++ GT H II L K ++ TP + + +++ + Sbjct: 787 KFEKILRI-PTEPRTY----FSLGTTAHLIIEHLTKMKMGGETPSMEKA-EDLLERFWSP 840 Query: 846 ENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + R +++LE E + + + ++ + G+ DR Sbjct: 841 DAYSSQKHEREDRTRLIAHLNNYLEWEM--NNPNIPVETEMEFEIRVLGTPFT--GYIDR 896 Query: 905 IDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ++ +SG + DYKT P K A++ D QL+L A +K + KV+ LFY Sbjct: 897 LERTESGGYAVVDYKTSKTPMSKNDAKE--DIQLNLYALCVKEK--TGSLPEKVS-LFY- 950 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQS 1022 L + +D I + + + E +E + + G+ P S + + Sbjct: 951 -LDKGKMVDYIPDYESISAFLENAEPV-------IDRIFAGDFEPKESR------NCLYC 996 Query: 1023 EYDHLA 1028 +Y L Sbjct: 997 DYRILC 1002 >gi|163815443|ref|ZP_02206816.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759] gi|158449080|gb|EDP26075.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759] Length = 1258 Score = 185 bits (468), Expect = 5e-44, Method: Composition-based stats. Identities = 108/917 (11%), Positives = 238/917 (25%), Gaps = 135/917 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-LLAADFLKIASKYWTERLVELNA 204 + + ++ + E++ + +++ + + E + Sbjct: 125 MGFVDEMKSMMSELFQYAVDREEIDMAMEQMDSESSTYRKLHDIRLIYEKFEEH-NANDQ 183 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 L+ A E +K + G TG P +L++ + +H +D Sbjct: 184 YIVAEQLSQLLAANVEKSQFISKSHMYFDGFTGFTPVQMKLVTQLMSHAASVTFAFDIDP 243 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + + L K K + + N + Sbjct: 244 D----------------RIGLAKPKEYELFRLTKETIAAICKAAADVHVDILDNVVMCGQ 287 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 I F +I I + L+ D R+EA+ +A +R + E Sbjct: 288 GEIPYRFRDDPCLAAFERNIFRYPHQKINGAADSIKLVRTDRARDEALYVASQIRKLVRE 347 Query: 385 NK---KKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 K A++ D ++A + + + I + I L S + + L + Sbjct: 348 KGYRYKDIAVVAGDLHDVAGYYRQAMDEYRIPVFIDENTALRGDPCSDTVRAFLAVMSDN 407 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 F ++ L+K E + R + + Sbjct: 408 FSFNSVFRLLKSG-----MTEVAYMDVERMENYALKRNLRGYKSW-----------LKEI 451 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTK 555 + + + + +++ + + + P T L + Sbjct: 452 TDKNNSDYAQEMDSIRRQIVSIFGEDCIDVYKPSSPNSKDTVTNYTKELYNFLDELHVCE 511 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + E + + + +LF K++ K E+ ++ I Sbjct: 512 KLEERRKRLYE-EKLFDEGDAYGQIFDKIVALFDKVVTILGDEKMTVKEYAGVLEAGISD 570 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673 + + + SRL + L G+NEG+ PK K LS + +L Sbjct: 571 MEIGIVPPTIDRVVVGDMTRSRLNHVKALFFTGVNEGIIPKPAKKGKILSNGDRQNLEKC 630 Query: 674 ---LKTAEKYIGQ--AAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 L ++K + + I R + E+ S + R+ + Sbjct: 631 GVTLAPSDKTNAYIEQFYIYTSLTKPSDNLYIVFRKMGEDMNAVGPSYLVDRIRNIFPDI 690 Query: 727 FFDNLKKRGQ------------------------------------------CYLDWTRK 744 ++ Q +L + Sbjct: 691 EIEDYDLDSQIPETVNGALRYLVSRYDEVGSDGTLQAVKRLIEQQGGNTEYATWLGAMQS 750 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + P+ L T S S++++ + + + L L + Sbjct: 751 GYDYVNETKTLSPETVRLLYGTELTESVSKLEKYAECQFKYFLQYGLGLMDRET--YQLN 808 Query: 805 RTDRGTLFHNIITELIKKRINK----NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 + G + H+ + ++ + K + + + Sbjct: 809 AANVGIILHSSMQKMFEYIKTKCGNNWADITETELADRAVEFVDASADDEAAEYFEDSSR 868 Query: 861 HKISHSFLEHEEKIQS----------SIEKIFVNIPAKMA-IESI------------GIH 897 FLE + + + + + Sbjct: 869 AAYVKKFLEDIAVRTAKTLRTFVLCGDMHPENFERYFDTSKLGDGIENYIFKLPNGMTMS 928 Query: 898 LTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAA---LKAGSFS 950 L G DR+D + G V I DYK+ K+ + QL A L+ + Sbjct: 929 LKGVIDRVDEYVSDGDVYFKIIDYKSSDQKIDKDRVLAGLQMQLVTYGAIAYELEKRRMN 988 Query: 951 QID----CRKVANLFYI 963 ++ V L Y Sbjct: 989 ELGRSSEQVHVGGLLYY 1005 >gi|153209588|ref|ZP_01947448.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] gi|120575307|gb|EAX31931.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177'] Length = 862 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 214/696 (30%), Gaps = 76/696 (10%) Query: 362 IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416 + N E ++A E +K + D R L L + +IS Sbjct: 216 VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 275 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ + I L D M + T+ + + Sbjct: 276 VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 322 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534 L + + ++ + P + + + L + Sbjct: 323 -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 368 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L S W + L + R L + +++ + + L Sbjct: 369 ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 422 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ W Sbjct: 423 TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 482 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711 P + NPFL +Q + A +I + L+E +I Sbjct: 483 PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSTPLQEGDIQLS 542 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 S ++ + D + + L + + E +P + Sbjct: 543 TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 596 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 597 SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 656 Query: 831 -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 657 SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 715 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941 + I + L DRID I DYKTG + +L QL L A Sbjct: 716 TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 769 Query: 942 AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + +++++ +K+ I +KF + +EL + L + Sbjct: 770 YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 828 Query: 999 TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 +G+ + + S+ + L R+ E Sbjct: 829 VDFSSGK----ADVDPLDSKTVCKVCHLNSLCRIGE 860 >gi|111225392|ref|YP_716186.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a] gi|111152924|emb|CAJ64672.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a] Length = 1170 Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats. Identities = 131/996 (13%), Positives = 264/996 (26%), Gaps = 106/996 (10%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD---- 83 TLVE S+ + ++RA ELR G + G Sbjct: 72 ATLVEAVAARIEAGADPRSILVLTFSRRAAGELRERITARLGPGGSASRGGPGSGGGPGA 131 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + LL +++ P RLL R + +D P P L + Sbjct: 132 WTFHAWCLALLRAHDRPAPHGGF-RLLSGPERDSRLRELIEGSREDGRPVWPPQLARALG 190 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + + ++ + L L W A+F ++ + Sbjct: 191 -TRGFTEEVRALLARAREVGLEPVGLAQLARRTDRPDWAALAEFYEMYLDVFGFEGALDY 249 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 A + AEA ++ + + + PA RL+ VA +V D Sbjct: 250 ADLVHRAVVVAEGAEAGEALRARYRHVFVDEYQDTDPAQERLLRAVAGGGRDLVVF--GD 307 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + P + L R S + R Sbjct: 308 PDQSIYAFRGAEVAGLLDFPQRFGT---PGRGGGAPIVALRTGRRMAPAPLLASRHVARR 364 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 +P + + I V + + EA ++A LR Sbjct: 365 --------IPAAGLPVAEIRAHRDLIGRTDLGAGRVQVRTYPSAGAEAEAVADLLRREHL 416 Query: 384 ENKKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFK 439 EN A++ + R++ LT G+ + + P++ +++L L Sbjct: 417 ENATPWPAMAVLVRTADRIARLRRVLTAAGVPVSVDGDDLPVAQEPAAALLLLALRCADN 476 Query: 440 L---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE-----------LVALRGNKNSYDI 485 A TL+ PL R Sbjct: 477 PAGALTADAARTLLTSPLGGADPAGLRELGRALRAFDRDAGAGDRDAGAGDRDAGGGDRD 536 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNST 544 + ++ W R+++ A + D ++ L + + + Sbjct: 537 AGARQPAASAELVRQAVADPDRWLVRVADPVARPARRVGDLLVVARRALREPAGSPEQAL 596 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S S W + V +L + L +++ + A Sbjct: 597 WALWSASGWQQALVAASAAGGAAGRAADRDL---DAVVALFDAVARLAQRRGPGTGAASL 653 Query: 605 WIDIITRLIDGETVKPKI--EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ + I + + P + + +L ++ L +D + + G+ +G+WP ++ Sbjct: 654 VDELGRQQIAADAIAPVGEDARRRGVRLLTAHRAKGLEWDVVAVCGVQDGIWPDLRERHS 713 Query: 663 FLSRVMQSDLNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASR 714 L T + + F +A R L+ T ++ ++ SR Sbjct: 714 LLGAEQLDAPARGGLRPPLTRQDLLADERRLFYVALTRARRRLLVTAVNSPDDDGSLPSR 773 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------ 756 L L V R + L +P Sbjct: 774 LLDELGVAVEN--ISGRPARPLTLVGLVATLRRLATEPTSSPALRAAARRRLAALAAARD 831 Query: 757 -------PKPFPPLEAQPRTYSFSEIKQLIN----------------DPYAVYARRILKL 793 P P + S++ + + Sbjct: 832 DAHRPLVPAAHPTTWWGLLDVTDSDVPVVAPGAPLRLSGSSLSSIGTCSLRWFLEH---- 887 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 G + H + E+ R + ++ + + + + Sbjct: 888 -EAHAVTVASTAQGFGKVVHALADEVTTGRTPADLAALDARLDTVWRHLDYEARWRSDQE 946 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSG 911 ++ E + + + ++ + + L GF DR++L +G Sbjct: 947 RAAAREALARFLAWHAGERGRR----VVDAEVRFTCRLHVAGREVMLRGFIDRLELDDAG 1002 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 V + D+KTG + A+ PQL A++ G Sbjct: 1003 RVHVIDFKTGRSAPGR-AELATHPQLGSYQLAVRTG 1037 >gi|238923930|ref|YP_002937446.1| AddB [Eubacterium rectale ATCC 33656] gi|238875605|gb|ACR75312.1| AddB [Eubacterium rectale ATCC 33656] Length = 1156 Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats. Identities = 122/1053 (11%), Positives = 291/1053 (27%), Gaps = 175/1053 (16%) Query: 48 TIYVP------TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + VP T+R + ++++ K+ + + S + F + + + Sbjct: 35 LVIVPEQFTMQTQR-------QLVDLSENKAIMNIDVLSFKRLAYRVFDELGITNLTV-- 85 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + L L +L +KL I ++L +S + ++ + Sbjct: 86 -LEETGKNLVLRKLAAQEADKLGVIGRNLNRIGYIS-------------EVKSLLSELVQ 131 Query: 162 EEKKWEDL-HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 E+L + + + + + + + + + + + ++ AE Sbjct: 132 YNISPEELGRYIASGMLSDTLSDKLKDVLVLYEAFEKFMQDKYIT--AEEILNVLSNVAE 189 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I TG P +L+ + V +DC I+ + + Sbjct: 190 ESAILRNSVIAFDEFTGFTPIQNQLIKKLFVISKKIYVTLTIDC--REDIFKSRGMQELF 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 K L + + ++ Y + SF Sbjct: 248 DMPK----------RTVKSLTEMAAFYGIEVEEPIILDKNYRLAENEELSF--------M 289 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 + + + +K + + + ++E IA + + + A++T D N Sbjct: 290 EQQLFRKRRSSFKKAPKHIHIDCLRDPKQELTKIARRINELVRNENLRYRDIAIVTGDVN 349 Query: 398 LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + V+ ++ I I A + + S+ + + A+ ++ + Sbjct: 350 IYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFTE 409 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 E + + + + K+ D Sbjct: 410 LSASEIDVLENYVLAC-----------GVRGKSAWDKKWVRLPKHKAGY----------D 448 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-----DWTKLTVTCL--QNVCLDEH 569 EL ++I++ + P+ ++K ST + ++ + + LD Sbjct: 449 IELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAG 508 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + + K + LF K + +A E+ I+ +D V T+ Sbjct: 509 DQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVT 568 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQ 683 I +RL N + G+N+G+ PK + +S+ + L A + Sbjct: 569 IGDIERTRLTNIKVMFFAGVNDGIVPKAAGRGGIISQYEREALKELDIELAPGAREQAFI 628 Query: 684 AAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGT------DFFDNLKKR 734 + +R L + + S + L + + + L Sbjct: 629 QRFYLYLNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDI 688 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA----------------------------- 765 L + +A Sbjct: 689 SSRQSALDYLLSNEVDDRWCEIAAAVMFYDASVSDAGDGNEVDDKAFTQKNSVERLINAR 748 Query: 766 -------------------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + S + +Q YA + L+L + Sbjct: 749 FEHYSKDPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTERE--ESGFTSL 806 Query: 807 DRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHIDIIW--- 856 D G ++H + KK ++T + L + I+ ++ D Sbjct: 807 DMGNIYHEALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQH 866 Query: 857 -----RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRIDLL 908 + +F + + + + S +++ + + + G DR D Sbjct: 867 SISHMKAVFKQTV--WALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTY 924 Query: 909 KSGFVD---ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFY 962 + DYK+G QL++ A+ + + + Y Sbjct: 925 TDEDRLFVKVLDYKSGNTVFDLVKLYYGTQLQLAVYMDAVMEQKKEALKQVSVEPGGMLY 984 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + S +E+++ LK L Sbjct: 985 YHIDDPVIDLKDVTPGTELSEEEINQMILKKLK 1017 >gi|117928983|ref|YP_873534.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] gi|117649446|gb|ABK53548.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] Length = 1095 Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats. Identities = 117/1001 (11%), Positives = 248/1001 (24%), Gaps = 120/1001 (11%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L +V + +R+ ELR +++ P+ ++ AD + P Sbjct: 68 ALENVLVLTGQRRSAAELRRRIALRL-GRTSREPLARTFHSYAFGVLCADAIQRGEPPP- 125 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 RLL A +I R L + P A+ L + + Sbjct: 126 -----RLLTSAEQDVIIRELLRGDLDRGATGWPER-LRPALPTRGFARELREFLQQAVQR 179 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +D+ L + W+ F + S+ L + P +A EH Sbjct: 180 GLTPDDVARLGRQAGRDDWVAIGRFAREYSQV--TALRDAAGYDPAELILAATALLQEHP 237 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + +++ + PA RL+ + + GA ++ D + Sbjct: 238 QLLESCRVRHALVVVDEYEETDPAQRRLLRAITS---GAALVIAADPDQSVYGFRGADPL 294 Query: 278 STNITSSNTTYSTHPQYSLAKLLDF----LDIKREDVKRLGNVSNEMYGRSMVISKS--- 330 S+ L + L R +RL V + + Sbjct: 295 GVREFLSDFADQRPRVVVLGRAYRGGPALLAAVRRLAERLPVVVPPGVSAAAYRGLAVGA 354 Query: 331 --------------FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + ++ + V + +A IA Sbjct: 355 EAGAVRALAGAGAGVAGAGAAAADGDGSVDVRAGAGADGDGSVDVRAFATPGAQAAYIAY 414 Query: 377 ALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLHSSILTS 432 LR + A++ ++ LT G+ + + P+ L Sbjct: 415 HLRHAHLVEGLGWTAMAVLVRSAAQIPPLRRALTAAGVPVRVPEQSSPIVDVPIVRHLLL 474 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L + RA + + Sbjct: 475 ALRIAAGQPLLDVERAPTAAASLAEELVAGPIGRADPLQLRRLRIALRRLDRAAGGERSS 534 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 +A N+ + ++ + +T T + + + Sbjct: 535 AVVLAQVLNDPRDLEVIDEQAAAPALRVARAIEAGRRAVTEPAA--TAETVLWEIWNATG 592 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + +L +S + + A+ ++ + Sbjct: 593 LATELYAQALSGGAVGAAADRDLDAVMALFAAASRYVDRLPRAGA----ALFADYLLGQE 648 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-------- 664 I +T+ + + + +L ++ +D ++L G+ EGVWP + L Sbjct: 649 IPTDTLAARAPEPDGVDLLTAHAAKSREWDVVVLAGVQEGVWPDLRRRGSLLGLRDFLDV 708 Query: 665 -----------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 + + + + A+ R + ++ + I S Sbjct: 709 LDGRIADAADRGPGGSIRTLEERSAALAEERRLCYLAASRARRKLIVTAVSGDQE--IPS 766 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--------------------- 752 R+L + L + RG L + Sbjct: 767 RFLDDIDPLDADERPLTRPPRGLDLPSLLGDLRRAAETADDAVARRAAGHLAQLAAAGIP 826 Query: 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + +P S S ++ P + Sbjct: 827 GAAPDGWYGLPAPSTDQPLRRDDEPVPVSPSRLELFTRCPLRWLLESCGG------RGRS 880 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 GT H L + D+ + + Sbjct: 881 SASQVVGTAVHRAAATFSVDVA----QLRERLDAALADTDLGTGWFAAAQRDRAAAMVER 936 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 ++ ++ + V ++ + LTG DR++ G + + D KTG Sbjct: 937 LAAWMA------RNPRRLLAVERDFQVTVGRA--LLTGRVDRLEQDDDGRLYVVDLKTGR 988 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ++ A PQL A+ G+F + A L ++ Sbjct: 989 RAVRK-ADLAEHPQLGAYQVAVVEGAFDEGRTPAGAALLFL 1028 >gi|317052676|ref|YP_004113792.1| putative DNA repair protein [Desulfurispirillum indicum S5] gi|316947760|gb|ADU67236.1| putative DNA repair protein [Desulfurispirillum indicum S5] Length = 915 Score = 184 bits (467), Expect = 7e-44, Method: Composition-based stats. Identities = 98/791 (12%), Positives = 228/791 (28%), Gaps = 70/791 (8%) Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 A T + + + + + +++ + + + L + ++ Sbjct: 160 QAFLRWATIFESTLKENRWIDQARLPHLVERMIRKVALPQPSRLFLMGFDELSPVQIRLL 219 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER------EEAISIAIALRMS 381 T ++ S+ A + A IAI + Sbjct: 220 EAVMARGCTVIQVIAQDHCALGGHVAMADSESEYWSAAHWALARLQVNPAARIAIVIPQ- 278 Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL- 440 L++ + + + + +R +I+AG L++ I LL+ + + Sbjct: 279 LEQVRHQVESVFDAVFYPQWDFSPESRLRTAYNITAGRTLASVPMVDIALLLLDRLHRNV 338 Query: 441 -NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 I+ ++ P E + L + + Sbjct: 339 ELTQAEISGILLSPFLPGYGEEFNHRVLLDL-------------------QLRQRQQVSL 379 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 T + SR + L + + + W++ Sbjct: 380 PLATVIRLAASRHCPRLVKFLRELGAGMQELRSR-------------KARPGQWSERLSQ 426 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L R+L + ++ + L++ + + + +I+ + + Sbjct: 427 LLTRAGWPGDRRLNSDEYQALEAWNTMLYTFSHCDPIVAELPLGDALKLISTMAHQTIHQ 486 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---T 676 P + + ++G LE+ +FD + + GL++ WP NP + +Q L Sbjct: 487 PHSYGEAPVQVMGMLEAGGAHFDAMWIMGLHDEAWPAEPRPNPLIPGAVQRLHQLPRSSP 546 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 ++ +A +I++ E + S + L L+ Sbjct: 547 RREWEYASALTHRFLESADEVIFSYPASEGDRHLRPSPLITGRRELS----LRELRLEEA 602 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 +L T + S +K P+ IL Sbjct: 603 TATSPLGQLLATASLQTLEDTHAHGLPADTLLRGGASVLKDQALCPFRGIGLHILGATAP 662 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFEKENLP----- 849 + RG L H+ + ++ K + + +Q I+ + Sbjct: 663 CGALAGVNPMVRGILLHSALEDIWNKLESSRGLQKMEARKRRQFIEDSLGRAIQRLQHEL 722 Query: 850 -----PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 P + + + + +LE+E+ + +++ + + L DR Sbjct: 723 NITIAPALAQMEVQMQAQWIDDWLEYEKTR-PPFTVASLERYHHISLGGLQLKL--KVDR 779 Query: 905 IDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-- 961 ID L++G + DYKTG + ++ DPQL L A L+ S + + Sbjct: 780 IDQLENGQHVLIDYKTGQASARDWEGERPADPQLPLYAVTLQDTSIGAVAYALINREACH 839 Query: 962 YIRLKQKFKIDCITND-KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 + L + + + S + + L + + +G + + + S Sbjct: 840 FRGLAMEEGMLPELGALPDQQSWQTMLQNWKAALENLAGEITSG---YGAISPRDDTSCR 896 Query: 1021 QSEYDHLARVA 1031 L R+ Sbjct: 897 YCPLPLLCRID 907 >gi|209364041|ref|YP_001424667.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway 5J108-111] gi|207081974|gb|ABS76477.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway 5J108-111] Length = 872 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 212/696 (30%), Gaps = 76/696 (10%) Query: 362 IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416 + N E ++A E +K + D R L L + +IS Sbjct: 226 VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 285 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ + I L D M + T+ + + Sbjct: 286 VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 332 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534 L + + ++ + P + + + L + Sbjct: 333 -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 378 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L S W + L + R L + +++ + + L Sbjct: 379 ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 432 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ W Sbjct: 433 TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 492 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711 P + NPFL +Q + A +I + L+E +I Sbjct: 493 PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQLS 552 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 S ++ + D + + L + + E +P + Sbjct: 553 TSPLIRHFPEINNEDL------QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 606 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 607 SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 666 Query: 831 -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 667 SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 725 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941 + I + L DRID I DYKTG + +L QL L A Sbjct: 726 TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 779 Query: 942 AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + +++++ +K+ I +KF + +EL + L + Sbjct: 780 YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 838 Query: 999 TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 +G+ + S+ L R+ E Sbjct: 839 VDFSSGKAG----VDPLDSKTVCKVCHLHSLCRIGE 870 >gi|154498366|ref|ZP_02036744.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC 29799] gi|150272677|gb|EDM99855.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC 29799] Length = 1118 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 110/928 (11%), Positives = 245/928 (26%), Gaps = 122/928 (13%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + L L + P+ L +D +++ + L E Sbjct: 82 LDAGGRLLLMYAALQAVAGELKVYGRPSRKPEFLSGLIATVDELKSCCVTPKHLWTAGEE 141 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 G D L + + L A+ P L + + + G Sbjct: 142 ADGPEGDKLLD-LSLIYGAYEA-LTARRAADPRDRVTRLAEGLEKSGWAKGMD-VYLDGF 198 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 T P ++ + N V D I + H S Sbjct: 199 TDFTPQETLVIKALLKQANSVTVALTCDSLDDERDSAGI-----------FAPARHTARS 247 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L +L + + +++ P+ + + + Sbjct: 248 LLRLARENGVPART--------------EIQENRAKEGPEELAFLEAHLFDAPETPWAEK 293 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRVKLELTRFGI 411 + ++L +A + E A + + E + A+ ++ R+G+ Sbjct: 294 PAHISLFKAGSPYAEVEYTAGEILRLVQEEGYRFRDIAVTARSMEGYGELIETIFARYGV 353 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + ++ + +++TS L A+ + + +K L ++ L Sbjct: 354 PVFLAKMSDILQKPILALITSALAAVAGDYQYDDLFRYLKTGLTGVSEEDRDLLENYALK 413 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + D H + + ED+ L L Q I Sbjct: 414 WDLRGSRWTQKGDWT----------------MHPKGYGLPVRPEDEALLARLNAVRRQVI 457 Query: 532 TPLVTYKTNKNSTC-----GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTL 584 PL + N + T + + L + + R P L + + L Sbjct: 458 APLEELRKNPDHTGLGHTKALYAFLERIGLPERLEERTAALQERGEPALAQEYSQLWDIL 517 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + + A E+ + + ++ V + + + Sbjct: 518 CNALEQCAQIVGDTPMEADEFARLFSLVLSQYDVGAIPVSLDRVTAGEMPRLAHKHCKAV 577 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHDFEMANGTRH 696 L G ++G P+ L+ +S L T + A Sbjct: 578 FLLGADDGAIPQAAPSPGLLNDDDRSLLASYGLELAPTLTEKLNRELTIVYETCALAGER 637 Query: 697 LIYTRSLRENNIPTIASRWL---QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 L + + + +L R L + + L+ + P Sbjct: 638 LSVSWAAMGSGGEEQRPAFLIPRLRGLFPALRPVTEAELEGAFRLSAPRPALELAGRYPE 697 Query: 754 YKRPKPFPPLEAQ---------------------------PRTYSFSEIKQLINDPYAVY 786 + P A S S + + + ++ + Sbjct: 698 AAQALRAMPEYAPLVERMEQAAGLTRGKLSRAAVDALYGSRVPMSASRMDKYKSCHFSYF 757 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMK 836 + LK + K + GT H ++ + + ++ + +++ Sbjct: 758 MQYGLKAEPRK--KAGFQAPEYGTFVHYVLEHVFQSEEWRDENGGVDGDKLDALTDEIVE 815 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPA------- 887 + I K + + + EE S + I + Sbjct: 816 RYIKEELGGLAEETPRFRYLFQRLLKPVRAVVRNVAEELSASDFKPIAFELGFGSGKDLP 875 Query: 888 --KMAIESIGIHLTGFADRID-LLKSGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEA 941 ++ ++ + I ++GF DR+D +K G + + DYKTG + Q+ L Sbjct: 876 PVELEVDGVTISISGFVDRVDGWVKDGRLNLRVVDYKTGRKSFDLTDVWNGMGLQMLLYL 935 Query: 942 AALKAGSFSQIDCRK--VANLFYIRLKQ 967 L+ + A + Y+ + Sbjct: 936 FTLQKEGRDLFGGHEIDPAGVLYLPARD 963 >gi|331092165|ref|ZP_08340995.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 2_1_46FAA] gi|330401937|gb|EGG81511.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium 2_1_46FAA] Length = 1110 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 107/923 (11%), Positives = 251/923 (27%), Gaps = 145/923 (15%) Query: 150 KNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + ++ + L + + + G ++ + + ++ L + ++ Sbjct: 120 GEMKSVLSEFAQYNIDVDTLDKMADSVEEGTYFQWKLKDIAKVYEGFSRYLSDKYITNEE 179 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + ++ I G TG P ++M + + +V +D Sbjct: 180 --LLDVLCHVIGKSDILKDSVIAFDGFTGFTPVQDKVMKELLHVCKKVVVTVTID----- 232 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 N THP Y L L L G + R ++ Sbjct: 233 -------------ERENPYTFTHP-YQLFALSKRLVT--------GLTALAKEERVEIVE 270 Query: 329 KSFLPPDTSDMRNTDILENKIP---------NIQKCFSDVALIEADNEREEAISIAIALR 379 LP + + + + + ++L A ++E + +R Sbjct: 271 PVCLPQNPAYRFRENPPLAFLEKHLFRYTTDSFSGEQESLSLHCAKMPKDETAFVMQEIR 330 Query: 380 MSLDENK---KKSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTSLLN 435 + + A+I + ++ + I I + + + SLL Sbjct: 331 HLVRIKGYRYRDIAIIAGNIATYADYMEKMAEVYTIPIFMDYKRSVLLNSFVEYIRSLLA 390 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + ++ ++ L F + + I K Sbjct: 391 MAEQNLTYESVFRFLRTGLTGFSREDIDILENYVIAM-----------GIKGYKKWNEKW 439 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + T T + + E + V ++ ++ + T T + + + + Sbjct: 440 VRTY---TGLSEEELEKVNEIRSEFVKMIQDVMSVLKKRRKTVTEITLTLHSFFMQEKLQ 496 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + + + + + + + +F K IE E+ ++ + Sbjct: 497 EKLVKYEETFQENNEPALAKEYAQIYRIVIEIFDKFIELLGDEYLPLKEYCALLDAGFEE 556 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL- 674 V + + +RL L G N+ P N A N LS + Sbjct: 557 AKVGVIPPGIDEVIVGDMERTRLKEVKVLFFVGANDVFIPGNQAGNGLLSEQDRKIFEAR 616 Query: 675 -----KTAEKYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD 726 ++ I M + + + S + + +LQ L L Sbjct: 617 KIPLAPNGKEKIYIQKFYLYMNLTKPSEKVYVSYSKVSGDGKGIRPAYFLQDLKRLYPML 676 Query: 727 FFDNLKKR---------------------------GQCYL----------DWTRKLDYTT 749 + +++ +L DW +D Sbjct: 677 HVNEEEEKKFTELELTKKAGITYIISGLQRRREEITDEWLELYTSYRKDEDWEGIIDNLI 736 Query: 750 KQPHYKRPKPFPPLEAQP------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + YK P+ + S + +++ +A + L+L + Sbjct: 737 EAGFYKMPEDRLSKQMAEKLYGEKIEGSVTRLERFAACAFAHFLSYGLRLKERK--EYRF 794 Query: 804 DRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEKEN----LPPHI 852 + D G +FH I + L+++ +++ Sbjct: 795 EAVDLGNIFHRAIEIFSRNLVKSGYTWTTLPKEVAEELIEESVETSITDYGNTVLYSSAR 854 Query: 853 DIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LL 908 + ++ + ++ + + G DRID Sbjct: 855 NEYMITRIKRMMKRTVWALAKQLEKGDFVPSGYEVSFG----------KGKIDRIDIYET 904 Query: 909 KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIR 964 + + DYKTG + + QL++ + +KV A LFY + Sbjct: 905 EDRVYVKVIDYKTGTKTFSLASLYHGLQLQLAMYMNMAVELERRKQPEKKVVPAGLFYYQ 964 Query: 965 LKQKFKIDCITNDKKKYSADELS 987 +K D I + ++ +E Sbjct: 965 MK-----DPIIDKVEEDKWEETV 982 >gi|95929584|ref|ZP_01312326.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] gi|95134281|gb|EAT15938.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684] Length = 881 Score = 184 bits (466), Expect = 9e-44, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 218/701 (31%), Gaps = 87/701 (12%) Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARR-----VKLELTRFGIN-------ID 414 E EE ++ A R L++ A++ + + EL+R + Sbjct: 219 ESEELLAAARWARQCLEQQVGIVAVVVPELERLQGEVQTIFSRELSRSAYPDRVPMDTFN 278 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 +S G PL+ + +LL DF ++ L++ P G E Sbjct: 279 MSLGYPLADQGMVAAALTLLQLQDS-LDFDQLSYLLRCPWFAGGIDEWQQRAL------- 330 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 A V RL + + +L L Sbjct: 331 ----------------FERQLRADNVLRLSVSDLLYRLRHQPQAPRGMLH---------L 365 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 V ++ +DW + + LQ + L + ++ + + + Sbjct: 366 VEQLQRWQGEHDKIAPADWVEHLNSFLQQIGWPGDASLDSRGYQVFAAWQDKVLTPVARL 425 Query: 595 GSC-IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 G + + + RL +PK + L I+G LE+ L FD L L G E V Sbjct: 426 GVVSATMTPGQLVSWVCRLSREILFQPKAQDH-RLQIIGLLETAGLTFDALWLCGAGEQV 484 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPT 710 +P + NPFL +Q + ++ A E + ++ + + + P Sbjct: 485 FPGGLSFNPFLPVALQKQSQMPHSDLFHEADYARLLLERLQHAAQQMVISYAQNKEERPC 544 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 S +L +L + G + + + P +P + Sbjct: 545 RCSPYLSQLPW------QQCQETDGVDWNGVS-----LEAIDDCRAPSLSSAQLEEPLSG 593 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNT 828 +K+ P+ + + + + + RG L H ++ ++ + Sbjct: 594 GTGLLKEQAQCPFKAFIHYRVGVRALDVPQPGLTSRRRGDLLHRVLQQVWQCLGSHAGLL 653 Query: 829 PEINHLMKQIIDSHF-------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++++I + + + + +L+ E + + + Sbjct: 654 DYDDTALRELIAEQVVAVLDGTRFAGHERALLAVEKQRLESLVLEWLDVERQREPFNVQS 713 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQLSLE 940 + ++ + L DRID+ G + + DYKTG + + L++PQL + Sbjct: 714 VEE---RQQLQVGPLRLNTIPDRIDMTADGRMIVLDYKTGQISVGDLVGEVLLEPQLPVY 770 Query: 941 AAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITN--------DKKKYSADELSEKS 990 A G + I +V + + + ++ + + EL + Sbjct: 771 ALHGVQGDVAAISFAQVRHGRCAFKGVSAEDEVLPGVRSVERSRGVKEGIANWTELIDHW 830 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 ++ + +G+ + K + L R+ Sbjct: 831 RQHAQCTAQAVVDGDATVTP---IHAKVCQFCDLKGLCRID 868 >gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104] gi|118167866|gb|ABK68763.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104] Length = 1042 Score = 184 bits (466), Expect = 9e-44, Method: Composition-based stats. Identities = 114/1022 (11%), Positives = 257/1022 (25%), Gaps = 135/1022 (13%) Query: 59 ELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117 L + + G + P+++++ + P RL+ A Sbjct: 68 ALTTALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPP------RLVTSAEQDA 121 Query: 118 IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 I R L + D + + + A L +++ + L L Sbjct: 122 IIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRR 181 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 W+ A F + + V A + A G + G+ Sbjct: 182 CRRPEWVAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 227 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 A + +++ P A + + + Sbjct: 228 ALEAFAVDAELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFG 287 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQK 354 + + + R +I Sbjct: 288 FR------GGDPGSLLDGAAPAVTLTTSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGP 341 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFG 410 VA+ A + EA +IA ALR + + + + ++ + R+ L G Sbjct: 342 GEGSVAVRLAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAG 401 Query: 411 INIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + + A PL+ L ++L A D L+ P+ + R Sbjct: 402 VPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR--- 458 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 L + D +L L A + + Sbjct: 459 -RNLQRANAGRPPGDFAELLVEALTGTAP-------------PPGALFRALRRVRAVLDA 504 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + S + ++ + + +L ++ + Sbjct: 505 AGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV 564 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 A+ ++ + L + + + +L + +D +++ GL Sbjct: 565 -----SRTSGASLRGLVEHVAALQLPGAGPVPVATAEQVSVLSAHAALGREWDFVVIAGL 619 Query: 650 NEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 +G+WP + L S L E+ + AA Sbjct: 620 QDGLWPNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARQRLLVTA 679 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL-------------------------K 732 + + + ++ + S + + G D Sbjct: 680 VDSDTDGSDHEAALPSPFCYEIAQWAGEDVETAALQPVSAPRVLSAAALVGRLRGVVCAP 739 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS---------------FSEIKQ 777 LD + P P S S ++ Sbjct: 740 DGAVDELDRRCAATQLARLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQT 799 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L + P A R D + G++ H +I + +++ E+ + + Sbjct: 800 LTDCPLRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDR 848 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESI 894 + +F + + ++ ++ V + + + Sbjct: 849 AWRHLPFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGR 905 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQID 953 + L G DR++ +G + I D KTG P + + QL+L A+ G + Sbjct: 906 EVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGG 964 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISH 1011 + + + + + ++ D L+ + E + + FI+ Sbjct: 965 DAEPGGARLVYVGKAAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIAR 1019 Query: 1012 LR 1013 Sbjct: 1020 RN 1021 >gi|166032802|ref|ZP_02235631.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC 27755] gi|166027159|gb|EDR45916.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC 27755] Length = 1134 Score = 183 bits (465), Expect = 9e-44, Method: Composition-based stats. Identities = 113/931 (12%), Positives = 251/931 (26%), Gaps = 134/931 (14%) Query: 151 NLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + ++ + + E+L + + + D L++ + + L + + Sbjct: 121 EVKSVLSEFDQYDIGEEELRQMKAVAGENSRLYYKLQD-LEVLYIGFKKYLEDRFVT--K 177 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + + + I++ G TG P RL+ + IV +D Sbjct: 178 EELLDALCRVVKGSDILKESTIVLDGFTGFTPVQNRLLGELLEVCREVIVTVTMDDRENP 237 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ H SL ++ + E+ L + + + Sbjct: 238 YVYKH--------PYQLFALGKHTVTSLIQIAAERKVSVEEALCLYERPLYRFCDNSAME 289 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 ++ V + A N REEA+ A +R + Sbjct: 290 FLERNIF----------RYSKECYKEKQGAVRIHVARNPREEAMKAAGRVRNLVRTKGYR 339 Query: 387 -KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + +I ++ + + I + + + + SLLN + + Sbjct: 340 YRDIGVIVSNMEVYGDDLGQAFDIYEIPVFMDHKRSILLNSFVEYIRSLLNMVKDNFSYE 399 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ L+ F + E + I K I K Sbjct: 400 SVFRFLRTNLSGFTYGEVDELENY-----------VIALGIRGYKKWQESWIRRPKYLEE 448 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + V VD ++ + + + + +L + Sbjct: 449 ENLEILNHNRV---RLVEKVDTLVYVLRQRSKTVKDVTMALYEFMVREELQLKLQRQSEA 505 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + + + + L LF K +E E++ ++ ++ V Sbjct: 506 FQEAGELALAKEYSQVYRILIELFDKFVELLGDENVTMDEYLKLLDAGLEEARVGVIPPG 565 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAE 678 + + +RL + LI G N+ P ++ L+ + + Sbjct: 566 IDQVVVGDMQRTRLKDIKALIFVGANDTFLPGALIRSGLLTERDRDKFATGKIHLSPGGK 625 Query: 679 KYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + + M + L S + S +Q + L ++ +K+ Sbjct: 626 EKAYEQKFYLYMNLTKPSETLDIYYSKVSADGKSIRPSYLIQEMQRLFSGLEIEDEEKQA 685 Query: 736 QCYLDWTRKL--------------DYTTKQPHYKRPKPFPPLEAQPRTY----------- 770 +WT KL Q Y K P + + Sbjct: 686 FSAQEWTPKLGMQKVIRGFQDGNAMDQEWQELYSWYKRQPQWQYRVEELMKSGFYTRPAD 745 Query: 771 -----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S + I++ +A + L+L + D G + H Sbjct: 746 GLTKEVAKQLYGEHFQDSITRIERFSACAFAHFLTYGLRLRERQT--YEFQPLDLGNVCH 803 Query: 814 NIITELIKKRINK---NTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHK 862 + + +K + T ++ ID E + + Sbjct: 804 SALEYYSRKLKEEHLSWTEIEEEKRQEYIDDSVEHAISDYGNSVLYSSARNEYMIERMKR 863 Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD-ITD 917 + + ++ + + + G DR+DL K + D Sbjct: 864 LLTRTIWALTKQLEAGDFVPVAYEMRFE----------NGKIDRVDLCKDKDKVYVKVLD 913 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKI--- 971 YKTG + QL + A + +V A +FY RL Sbjct: 914 YKTGSKAFDVVALYHGLQLQLMVYMDAAVKMTQKHYPDSEVIPAGVFYYRLNDPLVEKKV 973 Query: 972 --------DCITNDKKKYSADELSEKSLKNL 994 + + K L +++L++L Sbjct: 974 VGEEEEIWQKVLKELKVDGVMNLKDETLEHL 1004 >gi|254912828|ref|ZP_05262840.1| ATP-dependent nuclease [Listeria monocytogenes J2818] gi|293590825|gb|EFF99159.1| ATP-dependent nuclease [Listeria monocytogenes J2818] Length = 1157 Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats. Identities = 123/965 (12%), Positives = 276/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + +LA++ ++ EE ED+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSDLANLFKEMKQEEVSIEDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLAEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNCKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISVLLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|153855192|ref|ZP_01996376.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814] gi|149752361|gb|EDM62292.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814] Length = 1112 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 117/919 (12%), Positives = 245/919 (26%), Gaps = 128/919 (13%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERLVELNASSPV 208 + +I + E+L + + L +++ + + L E + Sbjct: 121 EVKSVISEFTQYDIGEEELDDM-IDSLDEESRLYYKLKDIRLLYDGFQDYLRERYIT--K 177 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + ++ E +++ G TG P RL+ + + G + +D Sbjct: 178 EELLDVLSREVRESELLKNSTVVLDGFTGFTPVQNRLILELMKYCKGVWITVIMDERENP 237 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + HP + + E Sbjct: 238 YSYR------------------HPYQLFGLSKQMVTTLISLAREEHIAVEEPVCLYGYPV 279 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---EN 385 K F +I +K ++ + A N EEA+++A +R + Sbjct: 280 KRFEKNKELAFLERNIFRYGAGTYEKEVKNLGIHVARNPGEEAMAVAEEIRKLIRKERYR 339 Query: 386 KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 ++ +I +D N+ +GI + + + L SLLN K + Sbjct: 340 YREIGVIVSDMNVYGDYLEQAFETYGIPVFMDHKRSILLNSFVEYLRSLLNMAEKNFSYE 399 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ LA F + E LE + Y + + + ++ Sbjct: 400 SVFRFLRTNLAGFSYEEVD------ELENYVIGLGIRGYKDWQNRWIRRMKGMEEEELER 453 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + H++ ++ E+ L +L + + + + Sbjct: 454 LNHYRVQMVEKVDNLMFVLKQKRKTVKDITLAVYEFMVQENIQERLKKTEEEFHEAGELA 513 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + + + + LF K + E+ ++ ++ V Sbjct: 514 LA--------KEYSQIYRIIIELFDKFVALLGEEPVGLSEYCKLLDAGLEEARVGVIPPS 565 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA------- 677 + +RL + L G N+ P + LS + Sbjct: 566 VDQVVAGDMQRTRLKDIRALFFVGANDCFLPGALLRTGLLSERDREKFRQADHALSAGGK 625 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL---------------- 719 EK Q + + + + + S +Q L Sbjct: 626 EKAYVQKFYLYMNLTKPSEKLKVYYSKVSADGKALRPSYLIQELLRLYPDVKVRDEDEKE 685 Query: 720 ------------LVLGGTDFFDNLKKRGQCY-------LDWTRKLDYTTKQPHYKRPK-- 758 L NL Q W K+D +Y+RP+ Sbjct: 686 LVQKELTEKTGVKYLIRGLQEKNLDVTWQELYTWYQKDPKWKEKVDELLTAWYYRRPEDP 745 Query: 759 ----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 L + S + +++ + A + L+L + D G + H+ Sbjct: 746 LSESVAKQLYGENFEGSITRMERYASCACAHFLAYGLRLKERS--VYEFKAVDLGNVCHS 803 Query: 815 IITELIKKR--INKNTPEINHLMKQIIDSHFEKEN--------LPPHIDIIWRHLFHKIS 864 + KK T K++ID E + ++ Sbjct: 804 ALELFSKKASEAGGWTILTEEQRKELIDECVEAAITDYGNSVLYSSARNEQLIVRMKQML 863 Query: 865 HS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL--LKSGFVD-ITDYK 919 + + + G DR+D+ + + DYK Sbjct: 864 ERTVWALTNQLKAGDFVPEAYELRF----------FGGKIDRVDVCETEEQVYVKVMDYK 913 Query: 920 TG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITN 976 TG + QL + A + ++V A +FY R++ Sbjct: 914 TGSKAFDIIALYHGLQLQLMIYMDAAIEFQKKRHPEKEVVPAGVFYYRIQN-------PI 966 Query: 977 DKKKYSADELSEKSLKNLI 995 K +E + LK L Sbjct: 967 VDKTKDKEEAEQAVLKQLK 985 >gi|220913224|ref|YP_002488533.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] gi|219860102|gb|ACL40444.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] Length = 1115 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 124/1046 (11%), Positives = 260/1046 (24%), Gaps = 138/1046 (13%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + ++ + + + + I PT+ A LR F + Sbjct: 89 APGTGKTTVLVESAVERVHRDGLDPAG--------ILILAPTRLAADFLRDRFTARLDRS 140 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + P ++ + P++ RLL LI + L Sbjct: 141 LSTTP-ARTWASYAFDLIRRAKAEGI---IPLARPPRLLSGPEQDLIIKELLEGHRLPGL 196 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + + + + D I + DL L W+ AA Sbjct: 197 ELPWPADLGGALETRGFRQEVRQLFDRIIESGRTPADLAELGKACGRQDWIAAAALYSEY 256 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 R+ E A P G A + + + I++ + PA L+ Sbjct: 257 RDVLDLRMPE--AFDPAGIITAARQIFQDAPEFLAAERQRLQLILVDDIQEANPAVYELL 314 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 A+ G L + + L + Sbjct: 315 ---ADIAAGKDCLVTSSPDTVVQGFRGARPDLVAELPRLLSPDATVLER--PLWHAHRLA 369 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + V+ + R+ + V + Sbjct: 370 PAVAEAWLGVAGRISQRA----------------GGQLSRRLEQTAGDAPGRVEAHLVPS 413 Query: 367 EREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDIS-AGIPLS 422 E +A + + A+I + ++ L+ GI + + A + Sbjct: 414 AVHELRYVAQRILDQHIGQGRSLTDVAVIVRNGGQVSELQRYLSGQGIPVRVPVAESAVR 473 Query: 423 TTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + L A +L+ + E R E + G + Sbjct: 474 DEVAVRPLLDAYAIALDTALLTPEAAVSLLTSRIGGATPLELRRLRQSLRREELTAGGGR 533 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 S ++ L + + +R+ + ++ A Sbjct: 534 GSDSLLVEALLEPGALGSLGIEGRAARRTARMIQSGRQAARQ----------------PG 577 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 N+ ++ T L+ + + L + ++ Sbjct: 578 ANAESVLWALWSATGLSAAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAGP 637 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 ++ + + +T+ + + + I+ + + +++ GL EGVWP + Sbjct: 638 E-QFLEYLLNQELPMDTLAARAQVDDAVEIMTPASAAGRQWPVVLIAGLQEGVWPNTRLR 696 Query: 661 NPFL-------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 L S +Q D + + + + L+ ++ + Sbjct: 697 GELLGSTLYADAVEHGTSYALQRDPLSRLRDIRYDELRSFSTAVSRAEELLICTAVASED 756 Query: 708 IPTIASRWLQRLLVLGGTDFFDN--LKKRGQCYLDWTRKLDY------------------ 747 S +L L + +R +L Sbjct: 757 --DQPSSFLDYAAPLAPGEDARGFTAVERPMTLRALVAELRQHAQLEGAQAQEAARVLAG 814 Query: 748 -TTKQPHYKRPKPFPPLEAQPRT-------------YSFSEIKQLINDPYAVYARRILKL 793 +P P QP T S S+++ + P + + Sbjct: 815 LAAAEPPVPGAHPDSWWGIQPLTSTDAVVPPGSTVFVSPSKVESVQKSPLDWFVQAAGGE 874 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 GTL H I ++ + + E+ ++ Sbjct: 875 AATDF------ARSLGTLVHAIAQDMPEASGQEYVAELARR-----WPQLGMKDNWEG-- 921 Query: 854 IIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIE--------SIGIHLTGFADR 904 + + ++ S + V +A+ L G DR Sbjct: 922 RLDHQRAEAMVRKLAQYVLVMRGSGRSLLGVEQDFDVALGEVLLDDASPREAVLRGQVDR 981 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF---SQIDCRKVANLF 961 +++ G + I D KTG +T + PQL AA+ AG F S Sbjct: 982 LEIDGEGRLVIVDLKTGKRQPGKT-ELASHPQLGAYQAAVLAGGFGDGSDTGQTLPGGAV 1040 Query: 962 YIRLKQKFKIDCITNDKKKYSADELS 987 +L K + + D + Sbjct: 1041 LAQLGTTAKSPAVQEQEPLDPQDNWA 1066 >gi|224499010|ref|ZP_03667359.1| hypothetical protein LmonF1_04633 [Listeria monocytogenes Finland 1988] Length = 1157 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 122/965 (12%), Positives = 275/965 (28%), Gaps = 124/965 (12%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA++ ++ EE D+ Sbjct: 97 AALDQKDKLKIFSRATSRKGFYSELANLFKEMKQEEVSIGDMVK-SATNLSTSVNNKVHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + + L+ + + I+I G T ++ Sbjct: 156 ISLIYQKYEELLA--DKFLENEDYLRLLTEKIADSDYLNQTEIVIDGFTSFSKQELTVIG 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + L+ I + + E S S+ Y+L +L + Sbjct: 214 ELMRKCDKVTISLTLNV---PEIQHGLDEYSMFKASTEAY------YALLELAKLNGTQV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E+ K ++ ++ +N ++ + +A+N Sbjct: 265 EENKFFLENKRAKTESLAFLANTWGHNKFMSFKNE-------------PQNLKIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + + I I ++ Sbjct: 312 RAEIEGIAREIRQLALNGYRYRDIAILTRNLGDYDVLCETVMEAYNIPTFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L+AI + I VK + L R + LE L + Sbjct: 372 PFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNRRKADILENYVLENGIQNK 431 Query: 484 DIMDLKSLVLDRIATQKNNTHVP--HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + R + +P + + E+ L+V+ + L KT Sbjct: 432 WKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLIVNPLSTLELNLRKAKTGM 491 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIK 599 + E + L E+ ++S+L + +E Sbjct: 492 EFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAWSSISALLDEFVEVLGEET 551 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + +II +D + + ++LL+ + G+N+GV P Sbjct: 552 LDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQK 611 Query: 660 KNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI--- 708 S + L +A+ IG+ + L + + Sbjct: 612 DKGIFSDQDRDALRAEDSKLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 709 --------------PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-------- 746 S +L +L + ++ + T +L Sbjct: 672 SESNYLRKIKGQFNELNESVYLTDPSLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYTL 731 Query: 747 YTTKQPHY----------------------------KRPKPFPPLEAQPRTYSFSEIKQL 778 + Y + L + S S +++ Sbjct: 732 SSVWWDAYNSYFENEKESIMAKQVLSSLYYENKTKPLQETTAKNLFGETIHASVSRMEKF 791 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------- 829 + + YA+ LKL+ HF+ D G +FH + + + N Sbjct: 792 FSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELKRNNLDWGNLTEEEC 849 Query: 830 -EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++ L + + E L ++ +I + +E+ S+ + + + Sbjct: 850 KQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEV 909 Query: 886 PAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQK 931 + + + L G DRID+ + + I DYK+ + Sbjct: 910 DFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDYKSSSHDLALTEVYY 969 Query: 932 LIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + + I + A + Y + ++ + + + Sbjct: 970 GLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKSSK 1029 Query: 991 LKNLI 995 +K LI Sbjct: 1030 MKGLI 1034 >gi|329924036|ref|ZP_08279299.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5] gi|328940875|gb|EGG37183.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5] Length = 1176 Score = 183 bits (463), Expect = 2e-43, Method: Composition-based stats. Identities = 109/1032 (10%), Positives = 264/1032 (25%), Gaps = 137/1032 (13%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + + + S + + +S + + L +++ + + Sbjct: 50 ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLLYKILRRRKEE 106 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177 L L+++ ++ E L + + Sbjct: 107 LHMFGASGEQH-------------GFVGKLSELYTEMKRYCIDASCVEEQLGQMVSGSGN 153 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 + + + + + ++L E I I G G Sbjct: 154 SPMLRRKLEDIVTVFRDFELEISRFY-MDEEDTLVSLAEGVTESEYIKRAD-IWIDGFHG 211 Query: 238 SIPATARLMSTVANHPNGAIVLPGLD-CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P R++ + H + LD + + + + + L Sbjct: 212 FTPQEYRVLREIIAHAKRVTIALTLDKPYKNGTVPHELDLFHPTAVTYIK---------L 262 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 ++D + ++ E +V SM+ D + + + Sbjct: 263 KGIIDEIGLEAEHRILHPDVLPRFQESSMLAHLERGYDRKRRWAEPDEGPDTASSPNRGR 322 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412 + L A + R E + E + + + + + +G+ Sbjct: 323 KGLLLHAASHRRAEIEGALREMLRLAQEEGARYREMAVFVRNMGDYEHLMGPLFREYGVP 382 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + S L+ I + + + VK L + LE Sbjct: 383 YFLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLT-REDMDRLE 441 Query: 473 LVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L D + + + + E +++ + + Sbjct: 442 NHVLASGIQGTRWTDGRPWKGIPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKR 501 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + L + L LD R + + L + Sbjct: 502 MKKAASAMDQSTAVYRLLEECAVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLGLLDQ 560 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 I+E K + + ++ + + + I +R L G+N Sbjct: 561 IVEMMGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIN 620 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--------EMANGTRHLIYTR- 701 +GV P + L+ + L + E + + + ++ L + Sbjct: 621 DGVLPAQFQDDGILTEPERVRLEDRGLELAPSISRRLLDERFLIYNALTSASKQLWVSYP 680 Query: 702 SLRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH------ 753 + + P + S ++ L ++ + GQ L+ K Sbjct: 681 AADDEGKPLLPSEVVRHLKMMFQLEEELLFPRPHAGQSALEQGGYAVRPDKTLAYLAGRL 740 Query: 754 --------------------YKRPKPFPPLEAQPRTYS---------------------- 771 ++P P L + S Sbjct: 741 RDWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETSRQLYGTKLR 800 Query: 772 --FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKK 822 S +++ + P++ +A LKL D G LFH + + Sbjct: 801 TSVSRMERFVACPFSHFASHGLKLK--DRQLYRLQAPDIGQLFHAALSSMAVKFQSQHRS 858 Query: 823 RINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQS 876 + E + +D + E L + I + E+ + Sbjct: 859 WGDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRG 918 Query: 877 SIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDN 923 E I + + + + + + G DR+D+ + + + DYK+ Sbjct: 919 KFEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVIDYKSSQK 978 Query: 924 P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKY 981 + + Q+ L + + + A Y + D + Sbjct: 979 DLRLHEVYYGLSLQMLTYLDVLLTFAEEWLGEQALPAGTLYFHV-----HDPVLQSANGM 1033 Query: 982 SADELSEKSLKN 993 + ++ +E+ LK Sbjct: 1034 TPEQAAEELLKR 1045 >gi|317132411|ref|YP_004091725.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3] gi|315470390|gb|ADU26994.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3] Length = 1128 Score = 183 bits (463), Expect = 2e-43, Method: Composition-based stats. Identities = 109/999 (10%), Positives = 258/999 (25%), Gaps = 130/999 (13%) Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 E+ ++ G + + + S + + F + + R+L ++ Sbjct: 42 EMERALLQTVGPAACLHVEVLSFSRMAQRVFGLCGGAAG---RAIDGCGRVLVMSMAAKQ 98 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 + L + A++ AK + + + ++ + L A + Sbjct: 99 VADLLQVYHRQ-------------ADSPAFAKAMVEAVAELKYCGVAPDMLAAAGGQMDD 145 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 L + + + L + G + E ++I G Sbjct: 146 DALAGKLADLSLLLQTYDALCSRLFSDDLDGIARLAEKLEDCLF--FEGKTVVIDAFKGF 203 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 R++ + + V D + L Sbjct: 204 TAPQKRVLGHILRQSDDVYVTLCADRLEDAEQGLGLFSPVQKTAGE-----------LLH 252 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L L++ LG + + S Sbjct: 253 LARKLEVAVAKPVLLGPPRR-------------FAAPEIAALEERVFRPEAAPFNGEASA 299 Query: 359 VALIEADNEREEAISIAI---ALRMSLDENKKKSALITADRNLARRVK-LELTRFGINID 414 + ++ A N EE +A L + + + +I+ L + ++GI + Sbjct: 300 LRIVSAGNLYEEVQFVAREIARLVQTGEARYDEMVVISRGLPLYNGILDPVCNKYGIPLF 359 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + A +S + ++ L + A+ +K LA E + Sbjct: 360 LDARRDVSAHPLMAFVSGALELLAGNFRQEAVLRYLKTGLAGLSTVEIAQLENYLYTWNL 419 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 R + + + R+ E + LA L Sbjct: 420 QGRTAWQTEWTDHPDGFGSTAQPDDARLRTLNALRLRVMEPVETLAAALEQ--------- 470 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L+ + + ++L + + + L + ++ Sbjct: 471 ADGAGQAQALYAFLTGMQVERQMAEACARFAQNGEQELED-EYRQVWDKLIGMLEQMAAV 529 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 E + ++ I + + R + + + GL +GV+ Sbjct: 530 LGERAVTVPELLRMLRLAIGATELAHIPPTLDQVTAGDAERIRAGDAAYVFVIGLADGVF 589 Query: 655 PKNTAKNPFLSRVMQSDLNL-----KTAEKYIGQAAHDFEMA--NGTRHLIYTRSLRENN 707 PK + + + L AE+ + + A +R L + Sbjct: 590 PKTGSGGILTDSEREQLIRLGLELSPPAEERLVEERFIAYQAFACASRALYLCCPRSDTK 649 Query: 708 IPT-IASRWLQRLLVLGGTD-----------------------------------FFDNL 731 +S +L ++ L Sbjct: 650 GKVIQSSPYLAQVQALFPHAMRCDASCGPLDAIWSGQSAFEQLASRFRERDGFSAALRAC 709 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRP--KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + R L+ ++ + L + S S ++ + + R Sbjct: 710 FESRPEDAIRLRALERAAEKRPARLTDHAAARALFGERMHISPSRLEAYGQCRFLYFCRY 769 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL---------MKQIID 840 + +P + + + GTL H ++ L++ E++ + D Sbjct: 770 --GMKALPRRRAELAAPEVGTLVHFVLEHLLQAHPGGQLAELSRAQLEEETGLLLTDFAD 827 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAI------- 891 + P + ++ QS + +P + Sbjct: 828 GYLGGLENKPERFKHLFLRLRETVLRLIDRLAAEFSQSRFVPVDFELPIGIDGEVPPTVL 887 Query: 892 ---ESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNPKK-ETAQKLIDPQLSLEAAAL 944 + I + G DR+D+LK+G + + DYKTG + ++ Q+ + L Sbjct: 888 PLQDGGAIAVEGKVDRVDILKNGDRAYLRVVDYKTGSKSFQFADVLYGLNLQMFIYLFTL 947 Query: 945 KAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKY 981 + + R+ A + Y +Q ++ Sbjct: 948 CDQAAERYGVRELLPAGVLYFPARQPDVETPHGAAPEEV 986 >gi|308069948|ref|YP_003871553.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681] gi|305859227|gb|ADM71015.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681] Length = 1189 Score = 183 bits (463), Expect = 2e-43, Method: Composition-based stats. Identities = 101/969 (10%), Positives = 260/969 (26%), Gaps = 129/969 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHAL-KNEKYGMWWLLAADFLKI 190 LSL + + L + ++ E L + + + + Sbjct: 109 LSLFKDSGDQLGFVDRLNTLFTELKQYGNDTRPVPEQLERMNAAGESTPILRGKLKDISL 168 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + L ++ + L I + G P +++ + Sbjct: 169 IYEDFERELTLKYIDGEDTLRMLAEQIAESSL--VRGADIWMDGYRRFTPHEYKVVEQLM 226 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + V + + + + + +T+ L + D L I+ + Sbjct: 227 LHASSLTVALTCNRSY------ESGQLPHELDLFHPSAATY--VKLKGMADELMIETQTQ 278 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----FSDVALIEAD 365 + R + + +RN + L + +++ + L A Sbjct: 279 LLRPDPLPRFKERPALAYLEANFEHRTGLRNQEQLRMRQQKLREQWTEEQPEGIKLYAAA 338 Query: 366 NEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 N R E +R + + + + + V+ ++ + + + + Sbjct: 339 NRRAELEGAVREMRRLARDEGARYREMALFVRHIEDYEPWVEPIFKQYEVPVFLDQRRSV 398 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + L+ + + + + VK L + LE L Sbjct: 399 LHHPLVELIRASLDIVQRRWRYEDVFRAVKTDLLLPLDGRVS-REEMDRLENYVLACGIQ 457 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTY 537 D + + + + + + + EL ++ + + T Sbjct: 458 GSRWTDGRPWQAVPSLSLELEEQERNRRRDETLDLMELCRDVIVTPLRAFEKRVGKARTA 517 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + L ++ + + + + + L +I+E Sbjct: 518 LEKCEAVYLLLEDAEIGHKLDAFIHQ-AEEAGKPEQAKEHRQVWDAVLELLDQIVEMMGD 576 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + + ++ + + + + T +R+ + G+NEGV P Sbjct: 577 ERLDTSLFAGVLETGLAEFRMGLVPPALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPAV 636 Query: 658 TAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGT-RHLIYTRSLRENNI- 708 ++ L+ ++ LN + E + + + + + L + ++ + Sbjct: 637 FHEDGVLNEQERTALNERGVELAPDMTRRLLDERFLAYTALTSAGKSLWMSYAVTDEEGK 696 Query: 709 ---PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF----- 760 P+ R ++ L G + + ++ + Sbjct: 697 SLLPSELVRHVRHLFPSLDERPLAGYPLPGDAWTTQWEYASHPSEALPQLIAQLRHWRRG 756 Query: 761 -----PPLEAQPR----------------------------------------TYSFSEI 775 P E S S + Sbjct: 757 GDILSPWWEVYNWYASQQGREKDKLRQLLTSLFYENHAEMQKETSRRLYGSKLRTSVSRM 816 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------- 827 ++ + P++ +A L+L D G LFH ++ E+ N+N Sbjct: 817 ERFVACPFSHFASHGLRLKERQM--YRLKAPDIGQLFHAVLGEMAINLRNRNVSWGSLST 874 Query: 828 ---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIF 882 E ++++ + + I + E + S E I Sbjct: 875 EECRQEAESTVERLAPRLQGEILMSSKRYGYILRKLKDIVSRASLILGEHARRGSFEPIG 934 Query: 883 VNIPA--KMAIESIGIHL--------TGFADRIDLLKSGF----VDITDYKTGDNP-KKE 927 + + + + L G DR+D+ G + + DYK+ K Sbjct: 935 LELDFGPGQQLPPLSFRLDNGVVMEIVGRIDRVDV-AEGEKGLLLRVIDYKSSQKDFKLH 993 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + Q+ L + + A Y + + + SA++ Sbjct: 994 EVYYGLSLQMLTYLDVLLNAAEGWLGETAYPAGTLYFHV-----HNPMLQSPNGLSAEQA 1048 Query: 987 SEKSLKNLI 995 ++ LK Sbjct: 1049 RQELLKRFK 1057 >gi|284048670|ref|YP_003399009.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus fermentans DSM 20731] gi|283952891|gb|ADB47694.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus fermentans DSM 20731] Length = 1003 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 122/962 (12%), Positives = 250/962 (25%), Gaps = 151/962 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNAS 205 +L + D + + L D L ++ + Sbjct: 105 GFRDSLLGLFDEFSRNGLDPDTYQRILMNWNREGALRNKDMDLAKLYLVYSTLVSGQKLE 164 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + E + + P RL+ + + L D Sbjct: 165 DLSQSYARAAKVLEEGGSVPWQQC-FFSEFYQLDPVQLRLLKALGRCCPVEMGL-FYDPK 222 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 P T + P + L L + + Sbjct: 223 RPELSQVTEKIYGDLLGDGFQPVPEEPVKDKPEDLAALAREWK----------------- 265 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + L E ++ +E +++ L + Sbjct: 266 ----------------------PGAKCGLAADHIHLGEGASQEQEIRLALTSIKERLQDG 303 Query: 385 -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 ++ ++ + + ++GI + L + LT LL A + D Sbjct: 304 VQPEEILVLVRKLQDYQGLVRSFAQYGIPCRLPLPADLKSQPLPDFLTKLLAAAGEKWDL 363 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 L + PL L R N + S +A + Sbjct: 364 SLWQALFRCPLM--------------ELLFQTDRENLDFLYTQAYFSSAGAFLAHVRRKE 409 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 V LVD + Q TP W +L + Sbjct: 410 LVSAGFW-----------DLVDFLQQDHTPEAWRDGLTEWLDRWQLARTWGQLHKEGKVD 458 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + + + +L + + E S + + + + ++ Sbjct: 459 LDQVKLLAGTEDFVRKTLDSLVKTWEQCGEEKSALGLD--KIRTFWKDSLAQASLPLTPG 516 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----- 678 + + + E + F + + G+ EG++P ++ S +++LN E Sbjct: 517 EPRGIPVREAGEIQGAAFPYVYILGVREGMFPAVKRESWLYSDQERAELNALGLELSLTA 576 Query: 679 KYIGQAAHDF--EMANGTRHLIYTRSLRENNI---------------------------- 708 + + + F A +R L + E Sbjct: 577 RALDTDRYFFGSAAALASRELHLSWYSDEEGGASPYITGLDHFYAPDSLPVTVYEADPDR 636 Query: 709 ---PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 P + + L LG + L G + D T+ ++P P + Sbjct: 637 CASPALLTNCLAEQEWLGPREKETLLAAVGTDFSDRTQSARRRWEEPDSPWNGTVPGVVK 696 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 +P S S + + P+A R+ KL + P G L H + + + Sbjct: 697 KPLHLSASSLDAFLQCPFAALVSRVWKLVPWEEQEPWPAPDVVGNLLHQTLAAFLGNHLQ 756 Query: 826 KNTPE-----INHLMKQIIDSHFEKENLP---------PHIDIIWRHLFHKISHSFLEHE 871 + ++Q+ F++ + HI + L++E Sbjct: 757 TGLEAKDREILEQELEQVYQGIFDRFHQEGKIPDSPLLDHIRERYGKELRTWLRGELDYE 816 Query: 872 EKIQSSIEKIFVNIPA----------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 + Q ++ V ++ + +G DRID + DYKTG Sbjct: 817 ARDQLGLKPWKVEWSFGREHSPWPALTRTVDGKKVWFSGQIDRIDSNG-KTWSLLDYKTG 875 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID--------- 972 P + + QL L AL ++D + Y++L + Sbjct: 876 QPPTGQDILQGRAVQLPLYLEALAVLG--EVDPEAILGGGYVQLCSGERKGGIWDKAVKD 933 Query: 973 --CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + + E + + + + V ++ G+ P R S L R+ Sbjct: 934 AFPWMQKARPPEKKQALEAAQQAMDQAVREIREGKFP----ARPSGTCPGWCPARDLCRI 989 Query: 1031 AE 1032 E Sbjct: 990 GE 991 >gi|222150841|ref|YP_002559994.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus JCSC5402] gi|222119963|dbj|BAH17298.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus JCSC5402] Length = 1118 Score = 182 bits (461), Expect = 3e-43, Method: Composition-based stats. Identities = 125/1001 (12%), Positives = 289/1001 (28%), Gaps = 147/1001 (14%) Query: 58 QELRSEFIEITGKKS------TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL- 110 E+ + I P + +E+ + D ++ ++ + + RL Sbjct: 16 HEIIERIKSQLKGQPLGDPIIMIAPRQSTFQ--IEQALSHDAMIKGSMRTAIYSFDRLFW 73 Query: 111 --------ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + I ++ + L S + ++ +A +I ++ Sbjct: 74 RLESEEGSTKLQHISNSGVEMLTYQILNEHKDELKRFQSTSAYFGFSQKMAAVISELKKY 133 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-NASSPVGYQIALMRAEAEH 221 D++ L ++ + D L + +T ++ + + E Sbjct: 134 NVTPSDVYTLLGKEMD---VRTKDKLHDIYEVYTALEEKMSGQYMQTEDMLVALCKMIET 190 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 I I G ++ ++A H + +D P ++ TE +I Sbjct: 191 SKTIRNADIYIDGFYNFTTVEYMVIQSLAQHAKSLTIALTIDQTDPV-LFRKTTETLNHI 249 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + +L +D + + L +M+ + S Sbjct: 250 KTYLHE------RALTYHVDNMHVSYRFNDEL----------NMLENSFSREVSISH--- 290 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLA 399 + L + + EA IA + + E K ++ D + Sbjct: 291 --------------TEHIHLSQHASVPAEAAHIAHKIMDLVRKGERFKDIVVLYRDESYV 336 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 +++ + I + ++ SLL+A + +K L F Sbjct: 337 KQLIDVCRKHQIPYHTDYKELMIHHKAIELIRSLLDAFKTNMRMEHLFRALKTGLIAHEF 396 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + + LE V + D++ + L + ++ + Sbjct: 397 KREEDLLLIDMLENVMIERGMYYDDLIHKRKLFY-------------DEKDVYEQDQWDA 443 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLS------ISDWTKLTVTCLQNVCLDEHRKLP 573 + +D++L I P N S S +S + +++ D + Sbjct: 444 LLQYIDYLLSVIEPFKERIVNAQSGRAFASAIYSFMLSISLPEYLMQHKDMAKDNGEQYI 503 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 L F++ L+ + + + + DII + + IL Sbjct: 504 ALTFDQILTGLNQVLDDFVLIMDEVTLDYKVMCDIIDVGFLALEYNAPPQGLDQIQILNL 563 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------DLNLKTAEKYIGQAAHD 687 +++ N + + G+N+ + P+ ++ ++ + D+ L + Q Sbjct: 564 DLAKVENKKYVFVCGVNDDILPRPMKEDALITDQEKRMMQEIGDIQLAPTTDVLIQDEWF 623 Query: 688 --FEMANGTRH-LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------ 737 + +H + + SL N SR+L RL + D Sbjct: 624 VFYNAVTHAQHSVYISYSLMNMNQEAMRPSRYLARLERQLHLEVQDMTLDMNPEDCITTY 683 Query: 738 ---YLDWTRKLDYTTKQPHYKRPKPFPPLEA------------------------QPRTY 770 ++ T + P E Sbjct: 684 HAGIKHAVSHIEDDTWSDVVAVYETDPQFEHVFKLRHYRNQSEMLAEHEVSRLYGDTIKA 743 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S S + + +A L+L G +FH+ + L +K ++ Sbjct: 744 SVSRFETFNQCAFKHFANHGLRLKERLP--YQFQSFQLGNIFHDALRHLSEKFKDQVLQV 801 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIW---------RHLFHKISHSFLEHEEKIQ-SSIEK 880 ++ ID + + H ++++ + + + +F + + + S+ + Sbjct: 802 DAAVIASEIDDYLKASLPSVHYEVLYSKHYYQYIVKQIRTILLSTFTAIQRQTKYSNFKM 861 Query: 881 IFVNIPA--KMAIESI--------GIHLTGFADRIDLLKS---GFVDITDYKTGDNP-KK 926 A+++ I +TG DRID+L S +V I DYK+ Sbjct: 862 ARFETKFGKGGALDTQIYRFGKNKKIEITGQIDRIDILPSPEKDYVRIIDYKSRQTDLDL 921 Query: 927 ETAQKLIDPQLSLEA-AALKAGSFSQID-CRKVANLFYIRL 965 + + Q+ L + + A + Y + Sbjct: 922 KQVYYGLQMQMLTYMDVVLSNTARLGLKSDVIPAGMLYFHV 962 >gi|224476067|ref|YP_002633673.1| putative ATP-dependent nuclease subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|251764615|sp|B9DIT7|ADDB_STACT RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|222420674|emb|CAL27488.1| putative ATP-dependent nuclease subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 1155 Score = 182 bits (461), Expect = 3e-43, Method: Composition-based stats. Identities = 120/967 (12%), Positives = 265/967 (27%), Gaps = 139/967 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIA 191 S L+L S + L++ I + E L +E + + Sbjct: 105 RSELNLYQSQTKYYGFSAKLSEQIQDFKKYAVSPEQLEQFISENPLQTRTQDKLHDIALV 164 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 ++ ERL + SS + + + +K + I I G +++ +A Sbjct: 165 YRHLEERLADNFVSSEDTLYKFIEKMDESKWLK--RAEIYIDGFHNFSTLEYQIIEKLAQ 222 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITS-SNTTYSTHPQYSLAKLLDFLDIKREDV 310 +L L + ++ + S+ +T + ++L + + D+ Sbjct: 223 CAKSVSIL--LTTNGDKDPFSLFRKTSSTLTHIEEIAQRQNIDFNLRRFTKQERFENRDL 280 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 L ++ F + ++ ++E N REE Sbjct: 281 SHL----------EHSFNEVFF------------------DKAAAEGNINILETSNVREE 312 Query: 371 AISIA-IALRMSLDEN--KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +IA +R + +EN + A++ D A ++ F I +I ++ Sbjct: 313 VNAIARDIIRKAREENIRFQDVAVLYRDETYAHLMESVFPEFDIPFNIDTKKSMTHHPVM 372 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ SLL I F + L K + F + + LE L +D Sbjct: 373 EMIRSLLEVIESKWSFEPLMRLFKTQVLTKKFKDNRYL--TDILENYVLERGIYGQRWLD 430 Query: 488 LKSLVLDRIATQKNNTHV-PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 K +++ + +L ++D IL+ L T + Sbjct: 431 DKYFKIEQFNLMGLKRQPMTEETEADYQRVIDLKNYVIDKILRFEKALAEADTAETYAAA 490 Query: 547 NLSISD---WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + +T + L ++ + + Sbjct: 491 FYEAFEQFNLPSQLMTERDELDLAGE-HQQAEELDQVWNGFIQTLDDLATVFGNREMTQK 549 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 ++++ ++ + + I +++ N + + G+N+G P+ + + Sbjct: 550 RFLELFDVGLEQLEFVMIPQTLDQVSIGSMDLAKVDNKKHIYMLGMNDGTMPQAISNSGL 609 Query: 664 LSRVMQSDLN-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIAS 713 +S + TA+ A M + H+ ++ SL NN S Sbjct: 610 ISDDEKKYFQEETQLELSPTADVLQMDEAFVCYIAMTRASTHVTFSYSLMGLNNDDKEVS 669 Query: 714 RWLQRLLVL------------GGTDFFDNLKKRGQCYLDWTRKLD-------YTTKQPHY 754 ++Q + L + ++ Q + +L Sbjct: 670 PFIQNIRDLYTNLDVLNVQYAAQHNPLTVMEHPHQTKIALFEELQSWLNHELTAETWLEA 729 Query: 755 KRPKPFPPLEAQ-----------------------------PRTYSFSEIKQLINDPYAV 785 + ++ S S + P+ Sbjct: 730 YQAMLHNERLSRGLQYLTSALTFDNKTIQLNQSLSKALYGDKINASVSRFEGYQQCPFKH 789 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 Y L+L+ K + D G +FH+++ + K + ++++ E Sbjct: 790 YTSHGLRLNER--TKYKLENFDLGDIFHSVLKYIADKIHGDFRNLTDASIRKLTQEALEN 847 Query: 846 ENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK------- 888 I S L + + + Sbjct: 848 ILPEVQYNLLNSSAYYRYMSVRIGAIVQSTLTALKYQGTFSKFRPQAFEKSFRKNPKSNE 907 Query: 889 -------MAIESIGIHLTGFADRIDL--LKSGFVD-ITDYKT---GDNPKKETAQKLIDP 935 + I I++ G DRID K I DYK+ + Sbjct: 908 QLAAESLYTSQGISINIRGQIDRIDTFNSKDRSFVNIIDYKSSGYSGTLDLTKVYYGLQM 967 Query: 936 QLSLEA-AALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCI-TNDKKKYSADELSEKSLK 992 Q+ L+ + + L Y + + + +EL + Sbjct: 968 QMMTYMDVVLQNKERLNLAETTEPGGLLYFHVHEPRVNFANWAEMDEDKRQEELLKSFK- 1026 Query: 993 NLIEIVT 999 L ++ Sbjct: 1027 -LNGLIN 1032 >gi|227810115|ref|ZP_03989028.1| predicted protein [Acidaminococcus sp. D21] gi|226904695|gb|EEH90613.1| predicted protein [Acidaminococcus sp. D21] Length = 1037 Score = 182 bits (461), Expect = 3e-43, Method: Composition-based stats. Identities = 107/999 (10%), Positives = 260/999 (26%), Gaps = 173/999 (17%) Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 + I+ L + L + A+ ++ ++ +ET ED Sbjct: 109 ARIASEAIEYLVGKELLPYFRTLADKKGFCDSVVQLLTELETCHVTGEDFKNAVLSWNRE 168 Query: 180 WWL--LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 + + + + E + G A + + + + Sbjct: 169 EKRGGEKDKEIALILSAYEALMNERHLCDLNGLYDAALDVLQDPGAILPWEKLYFSEFNE 228 Query: 238 SIPATARLMSTVANHPNGA--IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 L+ + + + + + A + + Sbjct: 229 LTGLQMALVKALGKRVSISFGLFYDESRPDLSEATRKLEEDLLGDGYEK----------- 277 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 I D+ K Sbjct: 278 -------------------------------IIAPKKVSRPEDLAYFAETFPKATGDAVA 306 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINI 413 + L EA + E + ++ L + L+ + N + + + +G+ Sbjct: 307 AQHIYLGEASSVDSEIKMVLTDVKKKLKSGVAPHEILLLVRNLNDYQGLGRYMEEYGLLS 366 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNAL 471 ++ L+ LT L A +D M + L+K L + F + Sbjct: 367 TLADVTDLAGQPLPLFLTKLWEAALTKDDTMPLLALMKTTLMQELFHVDRIAVGHLVEES 426 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED--KELAVLLVDHILQ 529 + + S + + W+ L E +L + Sbjct: 427 YIETPGFLLERISHLSGVSDLKPLFEALQTPKTCTQWRDYLDERLTEWDLVRTFGRLHQE 486 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 L K S + D + + + L +++E Sbjct: 487 GKVTLSEVKIMAQSEDFVRAFFDRLEALFEAVGSKDLSVGLGDIFSYWKEA--------- 537 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + G T+ + ++ + + + + + + G+ Sbjct: 538 -----------------------LIGTTITLTPSHEEGIRVMEASDIQGVPYPYVYILGV 574 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMA--NGTRHLIYTRS 702 +G++P + ++ S +++L L T+ + + + F A + + + Sbjct: 575 RDGLFPAISRESWLYSDEERTELAALDIPLGTSARRLARDRFFFASAVSLAEKEVHLSWF 634 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-----------CYLDWTRKLDYTTKQ 751 + AS +++RL + YL L Sbjct: 635 ADDEGG---ASYYIERLRHFFTPHALPFVTYHSDVHDCYSEPQMVRYLMEAENLGEKEAT 691 Query: 752 PHYKRPKPF---------------------PPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + + S S++ + P+ + Sbjct: 692 YLADHVDAKILLRAQDEKNRFAPKSLYNGYLGPQEETLHLSASQLDGFLTCPFMYLFTHV 751 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---------PEINHLMKQIIDS 841 KLD P G L H ++ + + + + E++ + Sbjct: 752 WKLDVKEAKTAFPTPDVVGNLIHLTLSRFMGRHLGEALFTKELEMLWQELSEAYQAAYTE 811 Query: 842 HFEKENLPPHID--------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------ 887 ++P W + ++ +++EEK + + V Sbjct: 812 MERNGDIPRSRYSDHIRKSYEEWLKRWLRME---VDYEEKSPTGVTVCAVEKAFGRKGAA 868 Query: 888 ----KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + ++ ++L+G DRID +SG I DYKTG P + QL L Sbjct: 869 WPPYDLTVDGKKVYLSGQIDRIDRSESG-YLIMDYKTGGRPTTARMDEGKAVQLPLYIKV 927 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKI-----------DCITNDKKKYSADELSEKSLK 992 L+ + +++ Y ++ ++ + +++ + S Sbjct: 928 LERNL--GLIDQQIFGAIYGDIRTGRRVGGMWSSVGKAAKEAPKSVRGKDMEDVLKISEN 985 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 + V +++G+ F + + K + R+ Sbjct: 986 VIAAAVRRMRSGD--FAAEP-YNGKCPDYCPARDICRIK 1021 >gi|314918022|gb|EFS81853.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1] Length = 916 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 114/927 (12%), Positives = 231/927 (24%), Gaps = 116/927 (12%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ V + T+ + Q LR+ + G + + P + ++ + + Sbjct: 46 RLSEVLVLAQTRPSAQALRTALVRRLGG-AHLDPQVMTVHALARRIVASPSKRLLTAP-- 102 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++ + L+ + A A ++ + + E Sbjct: 103 ----EQEFRMRELLAA-----------RDMSDWPEELRTCAGTAQFASDVRVMASRLRQE 147 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 +DL W + FL A + +IAL R A+ Sbjct: 148 GCDPQDLTEAGTASGVPEWRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVE 207 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 ++ +I T P+ RL++ +A ++ D + + Sbjct: 208 VRSRIKLLICDDLTECDPSQVRLLAQIARCHVPCVLTA--DPDQTIYGFRGAVAE----- 260 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L + +D + + + +S ++ Sbjct: 261 ---------------RLDEVIDEFPDVSVHHLTTNYRNSQHIAEVVESLRTGMPVMPSSS 305 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLA 399 + + VA + A + IA LR + + + A++T Sbjct: 306 RLRRRANHSTSTEAGTVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGEL 365 Query: 400 RRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLN-----DFMAIATLVKHP 453 + L GI + S LS + + + L L +ATL+ +P Sbjct: 366 DVIATILAAEGIPVLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANP 425 Query: 454 LAKFGFPEKYLSRAKNALELVALRGN--------------KNSYDIMDLKSLVLDRIATQ 499 LA + L + D S D + Sbjct: 426 LAGIDRSVIHRLETWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAE 485 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + ++ + + L + T + S W + Sbjct: 486 LDTVCEVYSVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRS 545 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 +R L L + + + I I+ I + + Sbjct: 546 RAVAGDSTANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVR-------QEQIPADRAR 598 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA-- 677 E + ++ + FD + + GL EG WP + S L A Sbjct: 599 ESDEDRDGVNVVTAHRIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPG 658 Query: 678 --EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW------------------LQ 717 E + + RH + S+ S L Sbjct: 659 WSENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLT 718 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWT-------------RKLDYTTKQPHYKRPKPFPPLE 764 L+ D + G R + +++ P Sbjct: 719 ELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADM 778 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 A S S I +L+ P + R + G+L H I Sbjct: 779 AGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASI-----GSLVHRIC---AGNMD 830 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + PE ++ E F + + V Sbjct: 831 QWSLPEALAELEAAWPEI---ELSAEWQRSAELADAKAAVQRFDGWLQLRNRQLIGTEVR 887 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSG 911 + + + S + G DR++ G Sbjct: 888 VDGTITVPSGTARVRGSIDRLERDAEG 914 >gi|315645968|ref|ZP_07899089.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453] gi|315278729|gb|EFU42043.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453] Length = 1176 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 114/1032 (11%), Positives = 259/1032 (25%), Gaps = 137/1032 (13%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + + + S + + +S + + + +++ + + Sbjct: 50 ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLMYKILRRRKEE 106 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177 L + L+++ ++ E L + + Sbjct: 107 LQLFGASGEQ-------------LGFVGKLSELYTEMKRYCIDASCVEEQLSQMMSGSGN 153 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 + + + + + L + +L A+ I I G G Sbjct: 154 SPMLRRKLEDIVTVFRDFELEISRLY-TDEEDTLASLAEGVADSEYIKRAD-IWIDGFHG 211 Query: 238 SIPATARLMSTVANHPNGAIVLPGLD-CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P R++ + +H N + LD ++ A+ + + + L Sbjct: 212 FTPQEYRVLGELIHHANHVTIALTLDKPYMDGAVPHELDLFHPTAVTYIK---------L 262 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + D L + E V ++ N Sbjct: 263 KGIADELGMDAEHHMLHPEVPPRFQDSPVLAHLERGYDRKKRWTGAYGDGNHEDKENGRR 322 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGIN 412 + L A + R E + E + + + + V + I Sbjct: 323 EGLLLHAASHRRAEIEGALREMLRLAQEEGARFREMAVFVRNMGDYEHLVGPLFKEYDIP 382 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + S L+ I + + + VK L + LE Sbjct: 383 YFLDQKRSELHHPLVEFIRSALDIIGRRWRYEDVFRCVKTDLL-LPLDGSLNREDMDRLE 441 Query: 473 LVALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L + Y D + + N + + E + + + + Sbjct: 442 NHVLASGIHGYRWTDGRPWKGIPSLSLEDGENEVLNLDGMQAIEYARRVIAEPLHAFEKR 501 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + T + L D + L LD R + + L + Sbjct: 502 MKKAATAMDQSTAVYRLLEECDVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLDLLDQ 560 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 I+E K + + ++ + + + I +R L G+N Sbjct: 561 IVEMMGAEKLSTELFTGVLDTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIN 620 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH-LIYTR- 701 +GV P + L+ + L + E + + + + L + Sbjct: 621 DGVLPAQFQDDGILTEPERLHLEDRGLELAPSISRRLLDERFLIYNALTSASEQLWVSYP 680 Query: 702 SLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---- 755 + + + S ++ L ++ GQ + R K Y Sbjct: 681 AADDEGKTLLPSEVIRHLKLMFQIDETPLYPRPHAGQSVPEQERYAARPDKTLAYLTGRL 740 Query: 756 ------RPKPFPPLEAQPR----------------------------------------T 769 P Sbjct: 741 RDWRNGEDIPHIWWHMYNWFAQKPEFRPRLESMLSSLSYRNEAQPLKEETSRQLYGTKLR 800 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKK 822 S S +++ + P++ +A LKL D G LFH + + Sbjct: 801 TSVSRMERFVACPFSHFASHGLKLRERQ--LYRLQAPDIGQLFHAALSSMAVKFQSEHRS 858 Query: 823 RINKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQS 876 + + E + +D + E L + I + E+ + Sbjct: 859 WGDLSADECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRG 918 Query: 877 SIEKIFVNIPAKM--AIESIGIHL--------TGFADRIDLLKSGF---VDITDYKTGDN 923 E I + + + + L G DR+D+ + + + DYK+ Sbjct: 919 KFEPIGLELDFGPGKPLPPLTFELLNGVKMEVVGRIDRVDMARGEHGIMLRVIDYKSSQK 978 Query: 924 P-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKY 981 + + Q+ L + + + A Y + D + Sbjct: 979 DLRLHEVYYGLSLQMLTYLDVLLTFAEDWLGEQALPAGTLYFHV-----HDPVLQSANGM 1033 Query: 982 SADELSEKSLKN 993 + ++ +E+ LK Sbjct: 1034 TPEQAAEELLKR 1045 >gi|310643060|ref|YP_003947818.1| ATP-dependent nuclease subunit b [Paenibacillus polymyxa SC2] gi|309248010|gb|ADO57577.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa SC2] Length = 1188 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 103/970 (10%), Positives = 251/970 (25%), Gaps = 132/970 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHAL-KNEKYGMWWLLAADFLKI 190 LSL + + L + ++ E L + + + + Sbjct: 109 LSLFKDSGDQLGFVDRLNTLFTELKQYGNDARSVPEQLERMHAAGESAPILRGKLKDIGL 168 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + L + ++ + I + G P +++ + Sbjct: 169 IYEDFERELTLKYID--GEDTLRMLTEQIAQSSLIRGADIWMDGYRRFTPHEYKVVEQLM 226 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 H + V + + + + + +T+ L + D L I+ + Sbjct: 227 LHASSLTVALTCNRSY------ESGQLPHELDLFHPSAATY--VKLKGMADELMIETQTQ 278 Query: 311 KRLGNVSNEMYGRSMVISKS----FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + R + + + + + + + L A N Sbjct: 279 LLRPDPMPRFKERPALAYLEANFEHRTGLWNQEQRMRLQQLREQWADTQPEGIKLYAAAN 338 Query: 367 EREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 R E +R E + + + + V+ ++ + + + + Sbjct: 339 RRAELEGAVREMRRLAREEGARYREMALFVRHIEDYEPWVEPIFKQYQVPVFLDQRRSIL 398 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 ++ + L+ + + + + VK L + LE L Sbjct: 399 HHPLVELIRASLDIVQRRWRYEDVFRAVKTDLLLPLDGRVS-REQMDRLENYVLACGIQG 457 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 D + + + ++R +E +L L D I+ + Sbjct: 458 SRWTDGRPW---QAVPSLSLELEEQERNRQRDETLDLMELCRDVIVTPLHAFEKRMGKAR 514 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHR------KLPNLWFEEEGKTLSSLFSKIIETGS 596 + + H+ + + L +I+E Sbjct: 515 TALEKCEAVYLLLEDAEIGHKLDAFIHQAEESGNPEQAKEHRQVWDAVLELLDQIVEMMG 574 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + + ++ + + + + T +R+ + G+NEGV P Sbjct: 575 DERLDTALFAGVLETGLAEFRMGLVPPALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPA 634 Query: 657 NTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRS-LRENN 707 ++ L+ ++ LN + + A + + L + + E Sbjct: 635 VFHEDGVLNEQERTALNEQGVDLAPDMTRRLLDERFLAYTALTSAGKSLWMSYAVTDEEG 694 Query: 708 IPTIAS---RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---- 760 P + S R +++LL G + + ++ + Sbjct: 695 KPLLPSELVRHVRQLLPGLDERPLAGYPLPGDAWTTQWEYASHPSEALPQLIAQLRHWRR 754 Query: 761 ------PPLEAQPR----------------------------------------TYSFSE 774 P E S S Sbjct: 755 GGDILSPWWEVYNWYASQQGREKDKLRQLLTSLFYENHAEMQKETSRRLYGSKLRTSVSR 814 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------- 827 +++ + P++ +A L+L D G LFH + E+ +N Sbjct: 815 MERFVACPFSHFASHGLRLKERQM--YRLKAPDIGQLFHAALGEMAINLRERNVSWGSLS 872 Query: 828 ----TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKI 881 E ++++ + + I + E + S E I Sbjct: 873 TEECRQEAESTVERLAPRLQGEILMSSKRYGYILRKLKDIVSRASLILGEHARRGSFEPI 932 Query: 882 FVNIPA--KMAIESIGIHL--------TGFADRIDLLKSGF----VDITDYKTGDNP-KK 926 + + + + L G DR+D+ G + + DYK+ K Sbjct: 933 GLELDFGPGQLLPPLSFRLDNGVVMEIVGRIDRVDV-AEGEKGLLLRVIDYKSSQKDLKL 991 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + Q+ L + + A Y + + + SA++ Sbjct: 992 HEVYYGLSLQMLTYLDVLLNAAEEWLGETAYPAGTLYFHV-----HNPMLQSPNGLSAEQ 1046 Query: 986 LSEKSLKNLI 995 ++ LK Sbjct: 1047 ARQELLKRFK 1056 >gi|258652354|ref|YP_003201510.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] gi|258555579|gb|ACV78521.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] Length = 1099 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 129/1013 (12%), Positives = 251/1013 (24%), Gaps = 148/1013 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+ +V + + + ++RA EL S + + Sbjct: 68 PGTGKTATLVEAVAERIMVRGVPPE--------QILVLTFSRRAAAELTSRITQRL-SVT 118 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 T P++++L S P L A +L D Sbjct: 119 TREPMVRTLHGYAFAVLRRQAARSGESIP-------RLLAAGESDHVVRELLAGHLDGEG 171 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 + A L +++ L + W AA F + Sbjct: 172 GGWPEALRPALGSPTFAAELRELLLRTAERGIGPSRLAEWGRRRRRPEWQAAARFAREYQ 231 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATAR 244 R P Q L RA L + + PA AR Sbjct: 232 DVADLRQGTAGLG-PALDQAELTRAALALLADDAVLAHEQGLVRRLFVDEYQDVDPAQAR 290 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ +++ + +V+ D + + + T S + L Sbjct: 291 LIDRLSSGADELVVV--GDPDQSIYAFRGSQPGAMRRITVEKTVSLDVSHRL-------- 340 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + + + + + ++V + Sbjct: 341 --------------------RPAVLTATRRVAAALPGGWPHRDLTSAGEPRPAEVVVRTF 380 Query: 365 DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIP 420 EA +A LR + + + L+ + V+ L G+ P Sbjct: 381 STAASEAAFLADELRRAHLRGGLAWSRMAVLVRSPAADLPVVRRALAVAGVPCATGLVDP 440 Query: 421 LSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 S + LL+ + L+ P R + + A G Sbjct: 441 GSDDPVVRSILRLLDCALEPARLTGERAIDLMTAPGFGMDTDAVRRLRRRLRVAHPANSG 500 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 A + ED V+ +L+ + + Sbjct: 501 PT----------------ADLVAAALLGAPLPEDLPEDLSAPVIAARTLLESVRSVAEDP 544 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + + R +L + + Sbjct: 545 DPRVPLWRAWQGLGLADALLAASLRGGRAGFRADRSLDAVLGLFDAAGELVARLPYAGVR 604 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 E D L P + +L ++ L +D + L G++EG WP Sbjct: 605 AF-LAEVSDRRIGLDPAGARGPGGPGGHGVALLSAHSAKGLEWDMVCLAGVSEGRWPVLR 663 Query: 659 AKNPFLSRVMQSDLNL---------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 + L D + + F +A + + Sbjct: 664 RRQSLLGLDELLDAEDGVASGNIDGPGGGDALNEERRLFYVAATRTRGRLV-ATSVADQD 722 Query: 710 TIASRWLQRLLVLGG-----TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP------- 757 T+ SR+L L + D ++R D L P P Sbjct: 723 TVPSRFLTELAGPAELPHGWPEQPDGSRRRRLQLTDLVADLRRAVTDPTTPEPTATAAAR 782 Query: 758 --------------------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 P + P T S S ++ L P R Sbjct: 783 QLARLAAAGVDGAHPRDWFGLAGLSTSAAPVADGAPVTLSPSTVEALTRCPLRAVLERRG 842 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + + G + H ++ L + + + NLPP Sbjct: 843 ARSGTSQQQIE------GIVMHALVDGLARGVPRADLVAEMERFLA------GRTNLPPW 890 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-------SIGIHLTGFADR 904 + R + + ++ + + + + + G ADR Sbjct: 891 LIARTRRALELMLTAAQTWMAELPADRRPVATEAQLSTWLPQSDEAGRGRPVKVNGRADR 950 Query: 905 IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 ID G + I D+KTG P + ++ + QL++ AL+ G+ + + + Sbjct: 951 IDQAPDGSMIIVDFKTGASVPSRAAVEQ--NAQLAVYQLALRLGAGADLATPE 1001 >gi|258406097|ref|YP_003198839.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692] gi|257798324|gb|ACV69261.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692] Length = 913 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 120/882 (13%), Positives = 240/882 (27%), Gaps = 93/882 (10%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L + + + + L E ++ AG+ A + Sbjct: 69 LSRSYQTIWSDPASPDVPRLLTPAQELAVWEDAVQQSPEGRRLLNAGAAARSAREAWQLW 128 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 AI W S +L LL Sbjct: 129 QEYCLNEEAIQAEAGPDTEAFLGWAAA--FRDRCRKRQWLDSGRLPRALRGLLAQGKGDI 186 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + L + ++ + ++ S VA + + Sbjct: 187 PEEVTLAGFDLVSPMQQELVQTLSEAGCPVWVLQPQEVQ----------SRVACVPCADA 236 Query: 368 REEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGIN------------- 412 R+E A R L+E+ + ++ + + V L Sbjct: 237 RQEMDDAARWARELLEESASIRIGIVVPNLQAVREDVLEALEAVLEPERLLPWGGDTPSC 296 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 I++S G P++ T LL L++ G E Sbjct: 297 INVSLGGPVAETAVGRCALGLLRLGRTTFKTEDFGALLRSRHWAGGESEWAARA------ 350 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 +L++ V Q T + +R E D Sbjct: 351 --------------ELEAAVYAVGEPQWTRTLAEFFLARHGETDCPETAR---------- 386 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L + + S S W + L++V P+ ++ L Sbjct: 387 ALHRFWARLDDLPRKQSWSQWAETFGEVLRSVGWPGASGQPSASYQAVEAWQECLEGLEQ 446 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 A E + + +L +P+ + +LG LE+ FD L + GL + Sbjct: 447 FDQVLEPAGYGEALQRLEQLARETLFQPESGHHP-VQVLGLLEAAGSRFDALWVMGLTDE 505 Query: 653 VWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIP 709 VWP +P L +Q ++ A++ + A ++++ R+ + Sbjct: 506 VWPPAARPHPLLPHALQIHSDMPHCAAQRELRFARQVTHRLSTAAPEVVFSLPQRDGDRE 565 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S L + + +L + +E Sbjct: 566 LQPSPLLADHPRIARDELL------PTTVPSLWEQLGQAAEPHWELDEGAPALVEGTRLR 619 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKR 823 +K P+ + R L+ + + +RG L H + ++ Sbjct: 620 GGTGTLKAQALCPFQAFGRFRLQAAAVRPPEPGITALERGNLVHKALETFWAEMQTRERL 679 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPP------HIDIIWRHLFHKISHSFLEHEEKIQSS 877 + I ++ E+ + ++ + E + Sbjct: 680 QGASAETIAATARKGAQKGVEQLAERRPMTLTGRHRELEEDRLTRLLEQWAARELERTPF 739 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 V ++ G L DR+D L G + + DYKTG+ A +L++PQ Sbjct: 740 AV---VEREHRVEASFAGARLRIVCDRVDRLDDGRLAVVDYKTGEIRVSDWFAPRLLEPQ 796 Query: 937 LSLEAAALK-AGSFSQIDCRKVANLFYIRLKQKFKI-------DCITNDKKKYSADELSE 988 L L A + + + K +L Y + ++ + + + + + EL E Sbjct: 797 LPLYALLAETEVAGIFVARIKTGHLEYAGVVGDDQVHLRCRACESMKANAEGLTWQELLE 856 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 L ++V+ GE ++S + L R+ Sbjct: 857 VWRGLLTQLVSEYMRGECAVA--PVEEKRSCRFCDLRSLCRL 896 >gi|212212386|ref|YP_002303322.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212] gi|212010796|gb|ACJ18177.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212] Length = 862 Score = 182 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 105/696 (15%), Positives = 213/696 (30%), Gaps = 76/696 (10%) Query: 362 IEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NIDIS 416 + N E ++A E +K + D R L L + +IS Sbjct: 216 VNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNIS 275 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L+ + I L D M + T+ + + Sbjct: 276 VAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC------------- 322 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCITPL 534 L + + ++ + P + + + L + Sbjct: 323 -----------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL--- 368 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + L S W + L + R L + +++ + + L Sbjct: 369 ------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAALD 422 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ W Sbjct: 423 TFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDKKW 482 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTI 711 P + NPFL +Q + A +I + L+E +I Sbjct: 483 PPVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQLS 542 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 S ++ + D + + L + + E +P + Sbjct: 543 TSPLIRHFPEINNEDL------QLPVWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGG 596 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE- 830 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 597 SGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNS 656 Query: 831 -INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 657 SSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQRE 715 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE-A 941 + I + L DRID I DYKTG + +L QL L A Sbjct: 716 TKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLYCA 769 Query: 942 AALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + +++++ +K+ I +KF + +EL + L + Sbjct: 770 YAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYHLA 828 Query: 999 TLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 +G+ + + S+ L R+ E Sbjct: 829 VDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860 >gi|288905007|ref|YP_003430229.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus gallolyticus UCN34] gi|288731733|emb|CBI13294.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus gallolyticus UCN34] Length = 1080 Score = 181 bits (459), Expect = 5e-43, Method: Composition-based stats. Identities = 116/962 (12%), Positives = 263/962 (27%), Gaps = 131/962 (13%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + ++ L + K L D+ ++T DL L + L Sbjct: 95 SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTEL-------HSAEKQEDL 147 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGSIPATARLMS 247 + L+ + + EA HL + ++I G T L+ Sbjct: 148 VKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVR 207 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + I+ + + + Q SL L L K Sbjct: 208 LLEEKCAQVII----GTYSSQKAYRAA-----------FSTGNVYQASL-DFLRGLAAKF 251 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + S ++F D + + A+ + N+ Sbjct: 252 HVQ-------PQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQ 304 Query: 368 REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 +EE +A A+R L + + ++ D + R ++ I +S Sbjct: 305 KEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDH 364 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + L+K L GN D Sbjct: 365 PLVHFIDSLERVKRYRFRTEDVVNLLKTGL----------------------YGNFKQED 402 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ ++ ++ + + I+ + L + + S+ Sbjct: 403 LDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSS 462 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + + + + E+ +T + + ++ K + + Sbjct: 463 LLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDD 522 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +I + + + + + G+ + +PK + + Sbjct: 523 CLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQAHFPKIAQNSSLI 582 Query: 665 SRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRENNIPTIAS 713 S ++ +N T + ++ + F + T L+ + N S Sbjct: 583 SDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDTES 642 Query: 714 RWLQRLL-----------------------------------VLGGTDFFDNLKKRGQCY 738 +L L L + + K+ + Sbjct: 643 SYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFW 702 Query: 739 LDWTRKLDYTTKQPHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDPY 783 R L + P +P + S S + N+ Y Sbjct: 703 SVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEARFPSDEPISLSSSAVTTFYNNQY 762 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDS 841 + + +L L + PD + GT H + ++K N + Q ++ Sbjct: 763 KYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDDSNHSFDSKLDKAIQTTNLED 820 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 F+ + I+ S + I+ ++ I + + G Sbjct: 821 DFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQVESEEETFELMIA-NSVRIRGI 878 Query: 902 ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DR+D L G + I DYK+ N + + PQL AL+ + + Sbjct: 879 IDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLS-ESEHIFGA 937 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ +++ +K + E + + L E+ ++++ R ++ Sbjct: 938 MYLHMQEPKVDLSSVATTEKILENLAKELTYRGL------FLEDEKAYLANGRYHLNDSL 991 Query: 1021 QS 1022 S Sbjct: 992 YS 993 >gi|320107767|ref|YP_004183357.1| putative DNA repair protein [Terriglobus saanensis SP1PR4] gi|319926288|gb|ADV83363.1| putative DNA repair protein [Terriglobus saanensis SP1PR4] Length = 927 Score = 181 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 113/908 (12%), Positives = 258/908 (28%), Gaps = 100/908 (11%) Query: 174 NEKYGMWWLL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 E+ W + + W + L+E + + A R ++ T Sbjct: 52 REEGRSGWQAPQILTWDGWVADQWRKMLIE-GVTDCILLNRAQERRVWMRAIEATADSGS 110 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + ST ++ A + + + N + Sbjct: 111 LL-STRAMGEMASDTTRLLSQWNAHEAFTTFQTGVSGP-----DVALFGRWLKTFERICD 164 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 Q ++ L + +V + Sbjct: 165 EQRWVSGSLAASRLASTVRGGGFSVPVVEILLVGFDRVLPSQGVVIEAMEERGASVDHAE 224 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF- 409 K ++L ++REE ++ A ++ L A++ D + R + R Sbjct: 225 QPKQAESLSLATCADDREELLACASWVKDLLACEGSGTIAVVVPDLDETREEIDRVFRER 284 Query: 410 ------------GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + S G LS T LL + + ++ +V+ P Sbjct: 285 IAPWSYEMGSESAPPFEFSLGDALSKTTMVRDALLLLRWLHGPIELEQVSQIVRSPFLGN 344 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + + LR K ++L+ I + + T Sbjct: 345 EADVSE----RARFDAQVLRRRKRLSLELELREAAKMLIFVKGDATPHTS---------- 390 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + + + + SDW+ L L+ R + F Sbjct: 391 ------LQSLSTALMQAQKLAQPRLKKAMGW--SDWSDLVREVLETAGWPGPRSADSREF 442 Query: 578 EEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRL--IDGETVKPKIEKSSTLFILGT 633 + L + +++ + + A + + ++++ L + ET+ + + + I+G Sbjct: 443 Q-----LRKRWDDLLDELAGMDALGERVTYEEMLSTLRSMAEETLFAPQSRGARIQIMGP 497 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEM 690 +E+ +F + ++ WP+ ++ +P L +Q + + A + + + Sbjct: 498 MEAAGSHFQGVWFLHADDMRWPRKSSTSPLLPWTLQKEAGMPGAAPAMDFAFARSVTERL 557 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 A+ ++++ ++ S + L L +D + Sbjct: 558 ASSAAEVVFSYAVTRAAGTMRPSPAVMALGGLNAWG------------RAVVDTVDTAVE 605 Query: 751 Q-PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 + P P L + + + +A L +RG Sbjct: 606 VMEEVEDSTPLPALTGERLRGGAQIFELQAACSFRAFAEARLFSAQPDEVDPGMSAPERG 665 Query: 810 TLFHNIITELIKKRINKNTPEINH--------------LMKQIIDSHFE--KENLPPHID 853 H + + ++ + E ++ I E + Sbjct: 666 NATHEALEKFWRRTKTQAELERLSTEIDPVSGRTKRDVVLDTCIAEALEVSDSSWERAYI 725 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-- 911 I H++ +LE E K E + + + +HL DR+D + Sbjct: 726 SIQHQRLHELLSRWLEIERKRPVPFEVRYTEHEVEETM-IGDLHLRLRVDRVDEIAGENG 784 Query: 912 -FVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAG-----SFSQIDCRKVANLFYIR 964 + DYKTG +P + + PQL L A A + G F+ + + +L+ Sbjct: 785 PEFVLIDYKTGRCSPSEWLGDRPDKPQLPLYAIAGELGNVGGIGFASLRPAE-KDLWLRG 843 Query: 965 LKQKFKIDCITNDKK-KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + + + + D+ ++ + L+E+ G+ K+ Sbjct: 844 MTRTPDVFPPLRKRSADLDFDQQIQEWQETLLELADSFAAGDAAVGPKKYP--KTCEHCG 901 Query: 1024 YDHLARVA 1031 L R+ Sbjct: 902 QRLLCRLD 909 >gi|238916497|ref|YP_002930014.1| hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750] gi|238871857|gb|ACR71567.1| Hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750] Length = 1109 Score = 181 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 113/903 (12%), Positives = 247/903 (27%), Gaps = 102/903 (11%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALK-----NEKYGMWWLLAADFLKIASKYWTERLVE 201 + +I + + K + + + + D + + + ++ Sbjct: 117 GFVSEMKSVISEMLQYDIKPDVMQDAAGAAYSDSEGSAALQYKLDDIVLVYNAF-AEYID 175 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 N + L E + I+ G TG P LM+ + + V Sbjct: 176 KNYITKEEILDKLCSKVTES-ERIKNCEIVFDGFTGFTPVQYNLMTILLSMCPKIYVSLT 234 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 +D E + L K+ D +K + + + Sbjct: 235 IDASERENSVRGREELFFMSKDCVS--------KLYKICDEEHVKVLEPVYIAGKAVPGK 286 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + ++ F + D ++ N + ++ + E +EE A + Sbjct: 287 NVIVNVNSRFKNSEELDFLEQNLFRNNSGRFNQKTDNIVIYEGAVAKEELTFAAGEIIRL 346 Query: 382 LDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + A++TAD + ++ L + I + ++ + + L I Sbjct: 347 TRLCGYRYNEIAIVTADMDGYGKLAANILKQNDIPYFLDYKRHVTDNPFIAAINGALGII 406 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + +I ++ ++ + L + RG + I + V + Sbjct: 407 ENNYSYDSILGFLRTGMSGMEREDIDLLDNYCVAVGIRGRGKWHEPWIRKFRGTVNNT-- 464 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 D E L I + PL +K S +++D K Sbjct: 465 ------------------DLEKLNSLRTMITDMLDPLEEVLKSKES-----NVADMVKAL 501 Query: 558 VTCLQNVCLDE------HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 L +++ + + + K + + K+ K E+ I+ Sbjct: 502 YEFLVREDMEQKVSVLNDSEYTGDEYVQLYKKVIEVLDKMYALLGSEKVGIKEFNKILAS 561 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + + + + I +RL N + G+N+G PK LS + Sbjct: 562 GFQEIKIGLIPQTNDCVVIGDIERTRLDNIKVMFFVGINDGNVPKKADSRSVLSESDREY 621 Query: 672 LNL------KTAEKYIGQAAHDFEMAN--GTRHLIYTRS-LRENNIPTIASRWLQRLLVL 722 L + + + L + + + S ++ + + Sbjct: 622 LEDKGIVMSASVREKAFTQRFYLYLIMTKSAEKLYMSYAVKNSEGAALMPSYIIRSMRKM 681 Query: 723 GGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + K Q + T+ L S + + Sbjct: 682 FSHCLKLSYKDTAQQNSYVTIPQAANSFDNTEIAANVDEDIIDSLTGGRLVGSVTSFENF 741 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLM 835 P Y R + L F + G + H +I E+ + + Sbjct: 742 AECPLRYYLRYGVDLKEREEF--TFSPVNFGVVLHAVIREVCDEIKKNGESYYLISDEKR 799 Query: 836 KQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 ++++ + ++ + E+ Sbjct: 800 REMVKRSVAAITDIYQNSILKDSSRNSFMIKRMEDLADRTVWAMGEQLKCGDFVPFVFEH 859 Query: 886 PAKMAIESIGIH--LTGFADRIDLLKSGF---VDITDYKTGDNPKKET-----AQKLIDP 935 M + ++G DR+D+ ++G V I DYKTG + ID Sbjct: 860 KFNMEVGDGDRKQLMSGTIDRVDICENGTDVYVRIIDYKTGK----KDFNIVKTYYGIDI 915 Query: 936 QLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 QL + A +++ K A +FY + SA+E+ +K Sbjct: 916 QLMVYMEAAMK-LVAKMRPGKNVIPAGVFYYNISDPIVSATT------ESAEEIEDKIKG 968 Query: 993 NLI 995 L Sbjct: 969 ELR 971 >gi|77919307|ref|YP_357122.1| hypothetical protein Pcar_1709 [Pelobacter carbinolicus DSM 2380] gi|77545390|gb|ABA88952.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pelobacter carbinolicus DSM 2380] Length = 896 Score = 181 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 98/715 (13%), Positives = 217/715 (30%), Gaps = 90/715 (12%) Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL-------------TR 408 + + +E A +R L+ ++ ++ D + + Sbjct: 217 VAYADVEQEVRCCARWVRHLLEGKAERIGVVVLDMTAYQSRLQRIFREELSPGALLPGAD 276 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 ++S G PL + LL+ + +++ L++ P E++ Sbjct: 277 AEKAFNLSLGTPLLNEGMVTTAFELLSL-GRTVSLDSLSYLLRSPFVWGHLSEQHARAVL 335 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + + + + + + D Sbjct: 336 DR------------------------ELRNLRMGQLPLKQAMVHARRGFKKKLGCCDLFS 371 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + + + + W + T L+ + R + ++ L Sbjct: 372 RQLEMIDSLLKDAQ----PRLPGAWARHFATLLETCQWSKDRPFNSREYQVFTAWKELLA 427 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 E + ++ RL +P+ + + +LG LE+ + FD L + G Sbjct: 428 GMACLDAVSAPMKRGEALRLLRRLAADAVFQPEGSEG-RVQVLGALEAAGMQFDALWVLG 486 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AHDFEM--ANGTRHLIYTRSLRE 705 +E V+P +PF+ +Q L + A+ AH N L+ + Sbjct: 487 AHEDVFPAPARPHPFIPVALQRRLEMPHADAARELDFAHKVAQRLLNAAPQLVVSWPEGL 546 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 + S + +L + ++ +L+ P Sbjct: 547 DGRERQPSPLIHQLPPIV--PVLAESRQPAALIQAVAGRLEQ------IADSSGPPIEAG 598 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + +K P+ +AR L + D DRG+L H ++ K N Sbjct: 599 SRISGGTGILKDQALCPFRAFARHRLGARALATASLGFDGLDRGSLVHRVLEWFWKDIGN 658 Query: 826 K------NTPEINHLMKQIIDSHFEKENLPPHI------DIIWRHLFHKISHSFLEHEEK 873 ++ + L+ + ID E+ + + + +L E K Sbjct: 659 WQSLTALDSAALQQLLVKYIDQALEELEAERRVPFSKSQKHLESSRLLALLGEWLAIEAK 718 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKL 932 + + + + L DRID L G I DYKTG + + + Sbjct: 719 R-PTFTVDTLEAWHREKF--GPLTLQTRIDRIDRLADGSQVIIDYKTGLASVRDWLGARP 775 Query: 933 IDPQLSLEAAA-----LKAGSFSQIDCRKVANLFYIRLKQKFKIDC----------ITND 977 ++PQL L L A +F+++ +I + + + + + Sbjct: 776 VEPQLPLYTLGRTGSDLSAVAFAKVRRGDSG---FIGIGRDDDLIPGIAATDGHRQLEAE 832 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + ++L + L ++ +G+ I S+K+ + + L R++E Sbjct: 833 TDIATWEDLLLFWRRTLQQLGRDFCDGQA--IVDPINSQKACDRCDLQPLCRISE 885 >gi|315640912|ref|ZP_07896008.1| exonuclease RexB [Enterococcus italicus DSM 15952] gi|315483330|gb|EFU73830.1| exonuclease RexB [Enterococcus italicus DSM 15952] Length = 1183 Score = 181 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 104/960 (10%), Positives = 261/960 (27%), Gaps = 139/960 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWWLLAADFLKIA 191 ++ L L + + + L + + E LH + + L Sbjct: 109 QADLQLFRGEISKLGFVQQLVSLYAEFQQGGVSVEALHLMGEKDNASAEIEEKLHELSQI 168 Query: 192 SKYWTERLVELN--ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + ++L+E + P+ + ++ ++ + +K II G + P L++T+ Sbjct: 169 FGRYEQQLLEKEVSLAQPLIELTNYLVSKLINVSEFSKTMFIITGFSSFKPDEKGLIATL 228 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 I L + T+ + + + I ++ Sbjct: 229 MQLGQVKIDLLLDHPALNTSPLDLFFDAQKTYDYFLNFAKD----------QSIPILFDN 278 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + S+ + ++ + + + +AD+ + Sbjct: 279 KVVANDQSDNRFVVEQFFRQTQNGQTFI-------------KDKAVDDYLHVWQADSIQT 325 Query: 370 EAISIAIALRMSL--------DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIP 420 E +A+ +R + ++ K L A+ + R + I + ++ Sbjct: 326 EMHQVALEIRRIVAGETELGKEKTYKDIQLFLAEEDKYRPYLASIFAEYEIPVYVNEKKK 385 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL----------AKFGFPEKYLSRAKNA 470 + L ++++ I L + L F + + + Sbjct: 386 MVQHPLVQFLETIVDLDRYYYRLTDIIRLYRTELYVPHYVKEAYPDFSRQQIQFQQLIDV 445 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E +AL N + + K + ++ S + + ++ + L Sbjct: 446 TENIALAQNFHGKRWISAKDWQVYSFDAEQEMPVETTDLSLKTNKLRQAFRRDIHGFLIK 505 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I T+ L + + + E+ L + F + Sbjct: 506 IKQAETFAEATRMLYDFLLKNGVDQQLLAWRNEAVQAGELDQAR-NHEQTWSALMATFDE 564 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + +++ + T + + +R D + + G Sbjct: 565 FVHLFGDTPFDWSVYTNLLIHSLTNVTFGKIPTSIDQVQVNRIDLARPAQADVVFVLGAT 624 Query: 651 EGVWPKNTAK--------NPFLSRVMQSDLNLKTAEKYIGQAAH--DFEMANGTRHLIYT 700 E P+ +L+ + + + ++ + + H + G + + Sbjct: 625 ETALPRKQENQTLLDSNEREWLNEQLLGERLMDPVKENLRKEPHVGYSLLLAGAKRTYLS 684 Query: 701 RSLRENNIPTI-ASRWLQRLLVL-----------------------------GGTDFFDN 730 + S ++QRLL + Sbjct: 685 YPASSETEQFVKPSPYIQRLLDWQMVTATKKASLKKEIVPTEVVGTYRGLIRRISQIERQ 744 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-------------------S 771 K+ R+L Q + + + + S Sbjct: 745 SKQEKLPLPTVWRQLKQKVLQSPLREVAEMVFMSSDFQNIPVSLTKEQAEKLYGSSLYSS 804 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRI 824 S ++ N Y + + L+L G FH+ + + Sbjct: 805 VSRLETYHNCEYRYFVQYGLRLKERD--IYGLTSAVTGEFFHDALDRFLSLLIRDQLSLT 862 Query: 825 NKNTPEINHLMKQIIDSHFEKE----NLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSI 878 N L+++++ S F + H + ++ E+ +S Sbjct: 863 NLTEEMRQSLVEEVLKSIFGDARYQILASSSRMMFLYHQLSQTIQRVSWVIQEQAKRSKF 922 Query: 879 EKIFVNIPA------------KMAIESIG-IHLTGFADRIDL--LKSGFVD-ITDYKTGD 922 + ++ + + G +H+ G DRID + + DYK+ Sbjct: 923 SPAQTEVLFGQIAAKKGISGLEIPLNNGGKLHVRGKIDRIDHVYVGDQAYIGVVDYKSSA 982 Query: 923 NP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + A + QL A + A + K A FY+ ++ + D++ Sbjct: 983 HDFSITDAYYGLAMQLLTYLDVALMDAAELIGQETAKPAGAFYLHVQDPILKEEENLDQQ 1042 >gi|169831438|ref|YP_001717420.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] gi|251764586|sp|B1I494|ADDB_DESAP RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|169638282|gb|ACA59788.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] Length = 1165 Score = 181 bits (458), Expect = 7e-43, Method: Composition-based stats. Identities = 122/1014 (12%), Positives = 255/1014 (25%), Gaps = 143/1014 (14%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + P V ++ + + LAR++ RN+L + Sbjct: 67 SFRRLAWRVFSEVGGAARPHVGDVGKRMMLARILARRRNELRLFGR-------------A 113 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKN----EKYGMWWLLAADFLKIASKYWTER 198 A + LA ++ ++T E L + L++ + Sbjct: 114 AGQYGFSGTLAGVLSELKTYLVTPEALEQAVRMLPGTAETDSLQAKLEDLRLLYTDFERE 173 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 L + L+ A + + G G P ++ + V Sbjct: 174 LA--GKYIDPDDYLTLLAARLGESPTLRAAEVWVDGFAGFTPQEYAVLEALLKAAARVNV 231 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 LD + + LA+L ++ E L Sbjct: 232 ALCLDP-----------RSGRREDLELFQVTRDTRARLAELARKNGVELERPVELAGPPA 280 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 F + ++ L+ A + R E A + Sbjct: 281 R-----------FRANPALAHLEREFFRRPTKKFAGPPENLRLVAAASRRAEVEGAAREI 329 Query: 379 RMSLDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 E + +L+ + + V +GI I P+ ++ S L Sbjct: 330 LRLSRERGWRWRDVSLVVRNLADYHELVATVFADYGIPCFIDRKRPVRHHPLVELIRSAL 389 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + + + +K L + L + + D +S L+ Sbjct: 390 ETVTENWTYDPVFRYLKTDLVPVSRGDVDLLENYVLAHGIKGAKWADPEDWHYRRSDALN 449 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 R P + R E + + ++ D Sbjct: 450 RPVPNGTGAPAPSDRDRYLREKVNRIRR--RAARHLLDFQRRVQAAGTVRELTAALYDLL 507 Query: 555 KLT-----VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + E R + + L +++ET E+ I+ Sbjct: 508 SDLDVPGRIEEWSREAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYGRIL 567 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 +DG + + + SR + + G++EGV P + + Sbjct: 568 DSGMDGLQLALIPPALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRHGGTGLFTDRER 627 Query: 670 S-------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLL 720 ++ T K + + H L + L + S + RL Sbjct: 628 EVLLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADEEGGALAPSSVIPRLR 687 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTK------------------------------ 750 L + L + T Sbjct: 688 ELFPGLREETLALEPEGTAPGADLPYVTAPGRTLGFLVTRLRDWKSGVTVDPVWWSVFNW 747 Query: 751 ----------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + P+ P L S S +++ P+A +AR Sbjct: 748 FAAHAGWRERCAPVLAGLFYENREPRLDPELTPELYGSRLVVSVSRLEEFRGCPFAHFAR 807 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------INHLMKQI 838 L+L + D G FH + + + + + Sbjct: 808 YALRLKERDVCR--LAAPDIGLFFHAALKTFEDRLREAGMEWDALESADCTRLASAVVEE 865 Query: 839 IDSHFEKENLPPHIDIIWRH-LFHKISHSF--LEHEEKIQSSIEKIFVNIPAK------- 888 + + E L + + ++ + S + + V + Sbjct: 866 LAPQLQSEVLLSSPRLRFLTGKLERVVERTAGVMAAHARHSRFQPVAVEVAFGPGRDVPG 925 Query: 889 --MAIESIG-IHLTGFADRIDL---LKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA 941 + G + L G DR+D+ + ++ + DYK G + + ++ QL + Sbjct: 926 PAYPLPGGGSVELAGRIDRVDVAHTDNAAYLRVIDYKAGPRSLALDDVYYGLNLQLLVYL 985 Query: 942 AA-LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 A L+ + + A FY R++ + + L L+ L Sbjct: 986 EAGLREAAALAGRECRPAGAFYFRVQNPLLKGGTPVPPAEVAPRLLKAFRLQGL 1039 >gi|71906107|ref|YP_283694.1| hypothetical protein Daro_0467 [Dechloromonas aromatica RCB] gi|71845728|gb|AAZ45224.1| conserved hypothetical protein [Dechloromonas aromatica RCB] Length = 912 Score = 181 bits (458), Expect = 7e-43, Method: Composition-based stats. Identities = 131/881 (14%), Positives = 246/881 (27%), Gaps = 77/881 (8%) Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 L + + + W L + S + + A +E L+ Sbjct: 12 RLAQTLRGELPAEQAVWRTRQALTLGQWLATLADEALLSGIADLPVALDAFSERLL---W 68 Query: 228 GPIIIAGSTGSIPATARL-MSTVANHPNGAIVLPGLDCHIPTAIWNT------ITEKSTN 280 +I A T + P M+ A + L + Sbjct: 69 EKVIAAALTEAAPLFDIQGMAASAAEAQALCRVWKLKPGGGELSDEAKLFIGWQADFDKR 128 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 ++ + Q L +L+ V L +++ + + Sbjct: 129 CRAAGWIDAAGLQRQLIELIAAGHFALPSVIILAGFDRYTPLEQDLMAALAVRGVIVESS 188 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLA 399 +E + + E ++ R L + ++ D Sbjct: 189 PDFPVEGSAQ---------ERLACADVEAECHAVVAWAREQLVARPDCRLGIVAPDLAGV 239 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 R L L LH +++ + + +F L PL + G Sbjct: 240 RDRLEFL--------------LDDVLHPALIRPDAAEVPRCFNFSLGRALADLPLIRVGL 285 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 L + +E L G + ++ R +L Sbjct: 286 DLLALGSGRAKVEQGRLSGLLLAGGWSAAEAEADGRARLDAALRRDL-PYFTTLPALIKL 344 Query: 520 AVLLVD----HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 A L + Q I L + + L W+ + CL+ R L + Sbjct: 345 AGRLAENEPPLCPQTIAALEAFVETAGAATRKLLPGQWSGVFRNCLKAAGWPGDRPLSSH 404 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 F+ L E + +++L +P+ + +LG LE Sbjct: 405 EFQARQAFGEVLDGFGRLDALLGPLAFAEAVRRLSQLCRQRLFQPETRGRPAIQVLGVLE 464 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---AHDFEMAN 692 S L FD L + G+N+ WP NP L M + A + +++ Sbjct: 465 SAGLGFDALWVMGMNDDQWPPPPRPNPLLPAEMLRAVGAAHASAEVELDFARRVHVRLSH 524 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + ++ + E N S + + + G + R + + Sbjct: 525 SAPVVTFSYARAEGNRVLRPSPLIAGIPLAGEKNAELETLARQMAGVA-------VSSVD 577 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P E + + ++ P Y + L + + + D RGTL Sbjct: 578 QIDDALAPPVAEGEKVSGGSWVLRAQAICPAWAYYQYRLGGEAMEEPVEGLDPAARGTLV 637 Query: 813 HNIITELIKKRINKNTPEI--NHLMKQIIDSHFEKEN----------LPPHIDIIWRHLF 860 H + + + +Q I K LP + Sbjct: 638 HEALEAFWTAIASFDALVALDEAAREQAISEAVGKALQHFELDRRTTLPARFRELEAARL 697 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 K+ +L+ E + E + PA++ IE GI + DRID L G I DYKT Sbjct: 698 AKLLDLWLQVEARRGLPFEVVACEQPAEVEIE--GIKVKMVVDRIDRLADGRQIIIDYKT 755 Query: 921 GDN--PKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQ------- 967 G K Q++ +PQL + AA + A F+++ K K Sbjct: 756 GAAIDTKNWAEQRITEPQLPIYAALVNDEVTAVVFAKVLLDKPGFAGVADEKDILPGVQG 815 Query: 968 -KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 I + + + + L + ++ G+ Sbjct: 816 IGDDKQKIFDPAEFPDWIAVITHWRERLHAVAKEVKAGQAG 856 >gi|253574627|ref|ZP_04851967.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786 str. D14] gi|251845673|gb|EES73681.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786 str. D14] Length = 1180 Score = 181 bits (458), Expect = 7e-43, Method: Composition-based stats. Identities = 114/964 (11%), Positives = 234/964 (24%), Gaps = 139/964 (14%) Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHA----LKNEKY-GMWWLLAADFLKIASKYWTE 197 + + L +A + ++ + L L+ + L + + E Sbjct: 114 GDQLGLIDRIAGLYTEMKKYNVDFSALREHYQLLEQTEGESPLLKDKMHDLSLLFAEYDE 173 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 L L + + + A I I G P + + Sbjct: 174 ELSRLYIDN--EDHVVKLAQGASKSAYLRGAEIWIDGFHTFTPQEYTAILALLKTAASVT 231 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 V LD P + KL + +V + Sbjct: 232 VSLTLDRVYS-----------NGNLPHELNLFYTPASAFVKLSRLAAEEGIEVLPAELLE 280 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + R +S K Q ++L A + R E A Sbjct: 281 ARPFPRFR---ESETLSYLESAYERRSPWPKSEPPQDLEQALSLHRAASRRAEVEGAARE 337 Query: 378 LRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 + E + + L+ + + + +GI + + + + Sbjct: 338 MVRLAREEGVRWRDMALLVRNLGDYEELLAPTMEAYGIPYFLDQKASMLYHPMIEFIRAA 397 Query: 434 LNAIFKLNDFMAIATL--------VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L+ + + + + L + + ++ + Sbjct: 398 LDVVLGFWRYEDVFRCVKSEFLLPLDGSLTREHMDVLENYALASGIQGYRWFDGRPWKSA 457 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L D+ A R I + + Sbjct: 458 PSLSLEQEDQTAASVKAMEQLQLLERCRAAVAGPLSAFEKEIRKA----KNAADMCAAVF 513 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 L + + + E + + + + + +I+E + Sbjct: 514 HLLERVEAAQRLDVLAHRMVR-EGKPRQAMEHRQLWSAVLDVLDQIVEMMGDEPLELELF 572 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 ++ + V + I T +R L L G+NEG+ P N + LS Sbjct: 573 AGVLETGLKELKVSLVPPSLDQVLIGSTERTRSGQVKHLFLLGINEGIMPANLQEEGVLS 632 Query: 666 RVMQSDLNLKTAEKYIGQAA-------HDFEMANGTRH-LIYTRSLRENNI----PTIAS 713 + L E G A +E +G L + + P+ Sbjct: 633 EQERERLAELGLELAPGLARKLLDERFLIYEALSGASRSLWLSYPAADGEGGALLPSEVI 692 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLD--------------------------------- 740 R ++R+ D Sbjct: 693 RHVKRIFPGLTERPLLLTPGPASRSADPMASQLEFVSRPGPALNALIGQLRLWKAGESIS 752 Query: 741 --WTRKLD----YTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLI 779 W R L+ + R P L + S S ++Q Sbjct: 753 PLWWRVLEWYKTRPEWESKAARLLTSLDYRNRVRGLTPATSRRLYGKRLRTSVSRMEQFS 812 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-------KKRINKNTPEIN 832 P+A +A LKL D G LFH ++++ + + E Sbjct: 813 ACPFAHFASHGLKLKERQ--LYRLQAPDIGQLFHAALSQMAITFKAQNRSWGSLTPEEAI 870 Query: 833 HLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIP 886 +D + E L + I + E+ + S E + + Sbjct: 871 QAANSAVDELAPKLQGEILLSSKRYGYISRKLKAIVGRASLILGEQARRGSFEPVGQELD 930 Query: 887 A--KMAIESIGIHL--------TGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKL 932 + + L G DR+D+ + + + DYK+ K Sbjct: 931 FGPGRPLPPLTFELPNGCVMEIVGRIDRVDMAEGEQGLLLRVIDYKSSQTDLKLHEVYYG 990 Query: 933 IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + Q+ L + + + + A Y + + + SA++ ++ L Sbjct: 991 LSLQMLTYLDVLLSSAEAWLGQPALPAGTLYFHV-----HNPLLQSSNGMSAEQAQQELL 1045 Query: 992 KNLI 995 K Sbjct: 1046 KRFK 1049 >gi|149178400|ref|ZP_01856990.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM 8797] gi|148842717|gb|EDL57090.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM 8797] Length = 1125 Score = 180 bits (457), Expect = 8e-43, Method: Composition-based stats. Identities = 127/1080 (11%), Positives = 311/1080 (28%), Gaps = 172/1080 (15%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 PT R+ +++ + + P + + E + L I + Sbjct: 43 LSPTVRSRRQVLDQLL-SPEMPVCFAPHVFTFEAFAETILQSLDQPVQTLP----EISKR 97 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 L ++ DL + S A ++ I ++ EE E Sbjct: 98 YLLRSIVD-----------DLVAAGQIQYFSSIAGTTGFLDLISHFISELKREEIWPEQF 146 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTK 227 + L + + L E+ G + A E G Sbjct: 147 SEACGRLKTDSRQKDQE-LALIYDRYQVALHEMRRYDSEGRFWSARTALQEGMWGPFGQF 205 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 I++ G ++ +A + ++ L+ ++ + + + + Sbjct: 206 DLIVLDGFADFTHTQYEILELLAARTSRLLISLPLENNLRRQDLFAKSVVARQVLENRLP 265 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + H + + S + Sbjct: 266 GTIH--------------------------------CVACERDAPASSRSQICEALFDNP 293 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLE 405 + + ++ +R E +A+ ++ L + ++ +L+ + E Sbjct: 294 RGIKPSPSAEQIKVLAVAGQRNELEVLAVEIKQLLLQGVPPEEISLVFRSTLEYGDLIHE 353 Query: 406 -LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L+ GI + S + + L F ++ +++ +PE Sbjct: 354 TLSAAGIPYFLGQEQEFSRFPVIRAIFTFLQIELDNWSFDSLMSILDSNYFSPDWPEYKS 413 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLV-LDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 A L + +S L +L R A + + + + + E A L Sbjct: 414 GTAVRCLSRILRELKIDSGKTDILNALEKEYRKANELCTRYPDQPKRQAILLEMESAYHL 473 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL------QNVCLDEHRKLPNLWF 577 + L + +S+++ L + + + Sbjct: 474 AKRLSSETQKLRGKELFVTWIEILISLANEFGLPKAWSSEEPGTEALDQRDQLVWERFQK 533 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + + + ++ L++ +T+ + E++ + +L + R Sbjct: 534 LLFHAVAEVDQIEQFHQREAAPLDLLTFRSLLLDLLEQQTLALQTEETGRVQVLDASQLR 593 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMAN 692 L+ L++GGL+E +P++ ++ S + +LN LK + F Sbjct: 594 NLSVPYLLVGGLSEASFPRSHREDCLYSEKDRGELNEYGLSLKRHANQQQEEMLLFYEVM 653 Query: 693 GT--RHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFF---------------DNLKKR 734 + LI + ++ P AS +L L+ L + R Sbjct: 654 TRFSKRLILSYPAISSTGQPLFASPYLTALMDLFEPGALSVRQVGELNPLPRREQAMSAR 713 Query: 735 GQCYLDWTRK-----------LDYTTKQPHY----------------------------- 754 L L+ Q Sbjct: 714 DLRILAIDELKRDQPGLFLQILEEPGFQATARNILSAVEMAVARFEQEGFTEYEGIMVSA 773 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + Q +S ++++ + P+ + + +L ++ + + RG H+ Sbjct: 774 ATRQAIHERFPQDYEFSTTQLELYLACPFQFFVQNVLGIEVPEPPELRTNFLQRGIHVHS 833 Query: 815 IITELIKKRINKN-------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I+T L ++ ++ ++ L ++++ ++ + + + +I + Sbjct: 834 ILTRLYEQLGSEGDNTQLYEADQVEPLFLELLEKRVSDSDVESKLQQVLLSIEKQILKDW 893 Query: 868 L------------EHEEKIQSSIEKIFVNIPAK---------------MAIESI--GIHL 898 EE + + +P + + + + Sbjct: 894 GGLFAEQSVTYGQLFEELWDTVPAIVGREVPFGKVPGEPDPSQRQYQHLTLGTGTRETRV 953 Query: 899 TGFADRIDL---LKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 G DRID+ + +I DYKTG P + QL+L A + D Sbjct: 954 RGQIDRIDVGTINGQKYFNIIDYKTGRSVPSSTEIRTGKKLQLALYLIAARRLGMIDADA 1013 Query: 955 RKVANLFYIRLKQKFKIDCI----TNDKKKYSADEL--SEKSLKNLI-EIVTLLQNGEQP 1007 + +L Y ++++ + + + S ++L E +L+ L+ + +++G P Sbjct: 1014 -EPFHLGYWKIQESGFVMPLHSARKRMIEPISPEDLEVLEVTLEGLVPHLAAFIRSGFFP 1072 >gi|293115646|ref|ZP_06604557.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus DSM 2876] gi|292809251|gb|EFF68456.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus DSM 2876] Length = 1105 Score = 180 bits (457), Expect = 8e-43, Method: Composition-based stats. Identities = 109/910 (11%), Positives = 239/910 (26%), Gaps = 110/910 (12%) Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + +I ++ + L + + + + + + + Sbjct: 119 AGRRQGFVSEMKSMISELKQYGITPDMLKEIAVSAGSDRLRDKLEDISLIYSEFENYIRD 178 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + V + L+ ++ ++ G TG P RL+ +A IV Sbjct: 179 RFVT--VEDKPELLYRFIDNSDLLKGSTVVFDGFTGFTPVQYRLIEKIALQAENIIVTVT 236 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + Y + L + ++V+ + Sbjct: 237 IS-------------SPAINNINTDMGMDELFYMSKDTIRKLGVIADNVRIPFLMQRIES 283 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 S F + +I D+ + E N +EE A A+ Sbjct: 284 DHSKY---RFRNSPALNFLEENIFRYNGSTFGGSTEDIHISEHLNGKEEIQYAAAAILKE 340 Query: 382 LDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + +I D++ GI + L + ++ I Sbjct: 341 VRTHGYRFNDIGVILGDKDNFANETARIFKESGIPFFMDNKRSLIGNPMVEYIRGIIALI 400 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + + A+ ++K+ L F + ++ I + Sbjct: 401 KERFSYEAVFRVLKNGLCGFERDKV-----------NIFEDYILAFGINGFDRYCEKFVR 449 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 K+ + E+ I + + + + + + Sbjct: 450 AYKSKEMGLDVIN-------EVREDFCCLISEFYSDMTKGTKASDYVNAVYDFME-KENL 501 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 ++ + + + F + + +L +I + E+ +I+ + Sbjct: 502 YEEMKMLADNTEDEDKAEEFRKSYGHVVTLLERIYDMLGDEPMTVKEFAEIMDAGFEEIK 561 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674 V + + + SR+ N L + G NEG+ PK + LS + L+ Sbjct: 562 VGIIPPSNDCVMVGDLERSRIDNIKVLFVLGANEGIIPKTGDNHGILSEDERMTLSDMQI 621 Query: 675 ---KTAEKYIGQAAHDFEMANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVL------ 722 T ++ + + L + ++ SR + + + Sbjct: 622 VLSPTPKEKVFMQNFYLYLNFTRPENTLYLSYGRYNDDGKEIRPSRVIGIISDMYDIKPY 681 Query: 723 --GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------------------------- 755 TDF N + D+ + DY + Sbjct: 682 HPDITDFLTNRQNSFHLVSDYAKIKDYDADKNLAAVISYFVNDDVYGNIIKKIIDSFNEN 741 Query: 756 ------RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 + L ++ T S S I+ ++ + L + + D G Sbjct: 742 VMSDNLTKEAAKMLYSENLTASVSRIETYAGCAFSHFLTYGLGIGERQ--EHKITNIDIG 799 Query: 810 TLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKENLP--------PHIDIIWRH 858 +FH + + + + K ++ F+K + + Sbjct: 800 DIFHKTLEYMGCTLMENGLNFGSLSDEERKDFVNVAFDKITADYKYSFFKESAANEFLKM 859 Query: 859 LFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---V 913 I + + E+ S I G+ + G DRID+ + Sbjct: 860 RLSDIVNRTVWAMGEQINAGSFIPAAFEHNFIRNIN--GMTVNGKIDRIDIASENGSNYI 917 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 I DYK+G+N KE QL + A +FY LK Sbjct: 918 KIIDYKSGENTISKEEILTGEKLQLLIYLDEALKEYEKDSVKAVPAAVFYNTLKDPVTDK 977 Query: 973 CITNDKKKYS 982 S Sbjct: 978 KDALQDFIPS 987 >gi|298372051|ref|ZP_06982041.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274955|gb|EFI16506.1| conserved hypothetical protein [Bacteroidetes oral taxon 274 str. F0058] Length = 961 Score = 180 bits (457), Expect = 9e-43, Method: Composition-based stats. Identities = 129/1073 (12%), Positives = 294/1073 (27%), Gaps = 179/1073 (16%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F + ++ + L+ V + P R+ T K P Sbjct: 3 FLDLVAKDIIARFGND-----------LSEVVMVFPNTRSRIFFDEYIANATD-KPLFSP 50 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + + + + + L + L ++ + + + + Sbjct: 51 RYEDFDSLFRQASSLREADNLML---------ISILYKIYVKHFYRNREETETFDEFFFF 101 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWW-LLAADFLKIASK 193 L D I+ + L+ E+ + L + + + ++ Sbjct: 102 GET------------LLRDFDEIDKYLIDAKKLYRNIADLEQLSDDFEHLTQEQVNLLNR 149 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 ++ + + I+ + ++ Sbjct: 150 FFADIKTNP---------TRIKDNFISVWS------ILADVYSDF----KAELTAKGLAY 190 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 NG I WN I+ S N + KL++ L + + Sbjct: 191 NGMIYRDV------IEKWN-ISAPSYNKANYVFVGFNVLSVCEEKLMENLR--PQSLYYW 241 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + K + + NI+K ++++I E +A Sbjct: 242 DYDEYFFDNPFVEAGKFIKKNME---KFPPAAVFETHNIEK-PKNISIISTSTEVAQASY 297 Query: 374 IAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 I + + +A++ + + I+++ G PL+ T + Sbjct: 298 IPTFIDSLKKKEWLAPDTAIVFCNEQTLLPAMRFIPTNVDKINVTMGFPLNQTPVYDFII 357 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 LLN K + L ++ +L+ L Sbjct: 358 RLLNLQQKGIKNGKF-------------------HHTHVLSIINHYYTSLIVGDTELQDL 398 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 I + + L E + +++++L+ + + + ++ +++ Sbjct: 399 KDKIIDNRLFLSTAEELNIPLIFRRIETSEDMINYLLEIVQAVGIKAKDADADFARINLL 458 Query: 552 -DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + L + + + I +I Sbjct: 459 NEAIFRVFRILNRISDLTSQGY-------------------------LDIKLPTLISLIK 493 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 R++ E+V E + L ++G LE+R L+FD LI+ LNEG+ PK + F+ + ++ Sbjct: 494 RILSAESVPFHGEPARGLQLMGMLETRNLDFDNLIIMSLNEGIMPKAEQQASFIPQFIRR 553 Query: 671 DLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGTDFF 728 + + E A+ F ++ + S N + + SR+L +++ Sbjct: 554 SVGMSCLEHQDAIFAYYFYRLLQRADNVALSYSTASNGIVKSEMSRFLMQIITELPNHEK 613 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP--LEAQPRTYSFSEIKQLINDPYAVY 786 + K P S + I I+ P Y Sbjct: 614 IRRISIQSDVSPTVNQPIVIEKTPSVMERIINKFSITGKSNIQLSPTAINSFIDCPLQFY 673 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN-------------- 832 R I + + D GT+ H I + + Sbjct: 674 LRYIEGVKEPDELTDELDNKILGTVIHRTIEIIYRHLGGIAPLIAEKNRNSFTPFEVSRA 733 Query: 833 ---------HLMKQIIDSHFEKE--------NLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 L+ ++++ F E +L +I+ + L + Sbjct: 734 KIEQYAGNHKLIDELLEKAFSVEFFGRPTPRSLYNGEHLIYFGVARNFIRKILLFDAAN- 792 Query: 876 SSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ 926 + + + I I + + G+ DR+ +K + + DYK K Sbjct: 793 APFVIHKMEGYERHTISLANGISVDIGGYVDRM-RIKDNTLFVDDYKVSTAENKLGTLSG 851 Query: 927 ------ETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYI-RLKQKFKIDCITNDK 978 + K I Q + V L Y+ R+K I + Sbjct: 852 LFEENAKKHPKHI-LQAFYYGLIMS----KNYPTNDIVPLLLYLPRIKSDIPYIKIGTGQ 906 Query: 979 KKYSADEL---SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ + + L + + + +PF + S +S ++ ++ Sbjct: 907 NAIGINDFRLIASEFEAMLCSKIEEIFDPTKPFEA--NTSTESCQWCDFKNIC 957 >gi|225375923|ref|ZP_03753144.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM 16841] gi|225212244|gb|EEG94598.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM 16841] Length = 1143 Score = 180 bits (457), Expect = 9e-43, Method: Composition-based stats. Identities = 117/992 (11%), Positives = 272/992 (27%), Gaps = 147/992 (14%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 R++ L + LS+ N + + +I + E L Sbjct: 84 RVLEETGKNLVLRKLAGEQKKNLSVLGGNLNRMGYISEVKSLISELTQYNVSPEKLDTFL 143 Query: 174 NEKYGMW-WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 + L + + ++E L +S + AE +++K I+ Sbjct: 144 ETEDVGETLRLKMQDISVMYHSFSEYLQGQYITSEEVLSLLCDAAEDSNIIKD--SVIVF 201 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 TG P +L+ + IV +D E + + + Sbjct: 202 DEFTGFTPIQNQLLRKLLVLSERIIVSVTMDAGEDFYHCRGEQELFSMSKKTVSV----- 256 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 L K+ + L + E+ L + N + + ++ Sbjct: 257 ---LMKMAEELHVTVEEPVVLSDGKNHR----------YKNAPSLYFMEQNLFRPYYHKW 303 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVK-LELTR 408 ++ ++ ++ N REE +A + + E K A++T D +L Sbjct: 304 RQKEDELRIVSLKNPREELHFVAREITKFVREKQYCYKDIAVVTGDVSLYDNYVDEIFAA 363 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 + I + + + ++L + + ++ ++ L + L Sbjct: 364 YDIPYFLDQTRTILFHPFIEFIRAVLEVVELDFSYESVFRFLRCGLTDITEQQIDLLENY 423 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + + R +E+ + + I Sbjct: 424 VLAKGIRGRKKWEKQWTFVFDDT---------------------EKENLTEMNEVREKIY 462 Query: 529 QCITPLVTYKTNKNSTCGNLS-ISDWTKLTV-----TCLQNVCLDEHRKLPNLWFEEEGK 582 PL T + + + + + + + ++ + + K Sbjct: 463 GFFAPLSEAFTQGKTVRDETTVLYELIEKLEIEQKLKQKELEFERQGNQVKAKEYAQIYK 522 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + LF K+++ E+ DI+ + V + + I +RL + Sbjct: 523 IVMDLFDKVVDFLGDEVLPVKEYADILDAGFEAARVGVIPPGNDKVTIGDIERTRLNHIK 582 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------KTAEKYIGQAAHDFEMANGTRH 696 L G+N+GV PK +S+ + + A + + + Sbjct: 583 ILFFIGVNDGVVPKAGNAGGIISQFEREKMVACHLELAPGAREKVFIQRFYLYLNVTKPS 642 Query: 697 --LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR------------------- 734 L T S + S ++ LL + + +++ Sbjct: 643 DFLYVTFSKVNADGKALRRSYFVGTLLKMFPEKTVEEIEETTSADCIMTPKSSMAFFLEG 702 Query: 735 ----------------------------GQCYLDWTRKLDYTTKQPHYKRP---KPFPPL 763 + T KL T + H P L Sbjct: 703 LQDDDRASDFSQVEKRKLWNALSKFYLTDSEWKPETEKLLKTAYEVHSDEPISHAVTQAL 762 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S + +++ YA Y L+L + D G ++H+ + ++ Sbjct: 763 YGTVLENSVTRLERFAACAYAHYLNYGLRLKERQLLE--FASVDMGNIYHDALEHFSRRV 820 Query: 824 I-------NKNTPEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEH 870 N +++ ++ ++ + + + Sbjct: 821 EKSEYTWFNIPEDVQETFIEESMNDAIAGCKNAGAFENVRNRYLTGRMRQTIKRTVWALT 880 Query: 871 EEKIQSSIEKIFVNIPAKM--AIESIGIHLT--------GFADRID--LLKSGFVD-ITD 917 + + + +++I L+ G DR+D I D Sbjct: 881 TQIQKGKFVPSDFEVSFSRADKLDAIRFQLSDEEKMNLLGRIDRVDTYETSDKVYVKIID 940 Query: 918 YKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC--RKVANLFYIRLKQKFKIDCI 974 YK+G+ + QL + A + + A +FY ++ +D + Sbjct: 941 YKSGNTSFSLVNLYHGLQLQLVVYMNAALELEEKRHPGKKAEPAGIFYYHIQNPI-VDGL 999 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 N+ + + + E+ L +V + E Sbjct: 1000 GNETEAEIRNSVLEQLK--LNGLVN--DDPEI 1027 >gi|29654532|ref|NP_820224.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493] gi|29541799|gb|AAO90738.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493] Length = 862 Score = 180 bits (457), Expect = 9e-43, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 214/698 (30%), Gaps = 76/698 (10%) Query: 360 ALIEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NID 414 + N E ++A E +K + D R L L + + Sbjct: 214 RRVNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFN 273 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 IS L+ + I L D M + T+ + + Sbjct: 274 ISVAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC----------- 322 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCIT 532 L + + ++ + P + + + L + Sbjct: 323 -------------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL- 368 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 + L S W + L + R L + +++ + + L Sbjct: 369 --------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAA 420 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ Sbjct: 421 LDTFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDK 480 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIP 709 WP+ + NPFL +Q + A +I + L+E +I Sbjct: 481 KWPRVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQ 540 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S ++ + D + + L + + E +P + Sbjct: 541 LSTSPLIRHFPEINNEDL------QLTAWQPLKAHLFKIKMLETIEDAQAPALQENEPMS 594 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 595 GGSGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTL 654 Query: 830 E--INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 655 NSSSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQ 713 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE 940 + I + L DRID I DYKTG + +L QL L Sbjct: 714 RETKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLY 767 Query: 941 -AAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 A A + +++++ +K+ I +KF + +EL + L Sbjct: 768 CAYAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYH 826 Query: 997 IVTLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 + +G+ + + S+ L R+ E Sbjct: 827 LAVDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860 >gi|152965139|ref|YP_001360923.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151359656|gb|ABS02659.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1098 Score = 180 bits (457), Expect = 9e-43, Method: Composition-based stats. Identities = 125/1048 (11%), Positives = 264/1048 (25%), Gaps = 100/1048 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L + D L P V + P++R+ LR + + +++T P ++ Sbjct: 39 LRELVATRVERDGLAPD---RVLVLAPSRRSADLLRDD-LSRRLRRTTGQPAARTPQSYA 94 Query: 86 EEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLY------------- 131 P +S ++ LA L+ D Sbjct: 95 FGLLRLVHARDGAPPPRLISGAEQDAILAELLRGHLAVTSPEGPDAAELPELDPAGASTA 154 Query: 132 ------PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 P P +P + L D++ DL L W AA Sbjct: 155 TGGLRVPGWPSDVPRASWGLRSFRNELRDLLMRAVERGLGPADLADLGRAHARPEWCAAA 214 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIP 240 D L+ L +A P G + A + + + + Sbjct: 215 DLLEEYLAV--NALGRADAYDPAGVVDEAVAALRAEPELLAAERARWDLVAVDDAHDLSE 272 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 A RL+ VA G ++ D T + ++ + P+ + Sbjct: 273 AALRLLEVVAG---GRDLVLATDPDSVTQGFRGADARTAAELADRFG----PRPGVGATT 325 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L L VS + R + + P + V Sbjct: 326 VVLGTDHRQRPLLHAVSRAVSTRIGALGGA-----------PQRAARPAPEVAVERGRVE 374 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS- 416 + + +EA +A LR + A++ ++ L G+ + + Sbjct: 375 VAVLASATQEASWVAQRLRRRHLLDGVPWSQMAVVVRSAGHTAALRRSLAAAGVPLAVPL 434 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIA--TLVKHPLAKFGFPEKYLSRAKNALELV 474 A +P+ L S L + A LV PL R + Sbjct: 435 AEVPVRDEPAVRPLLSALTVVLDPAALDDAAARELVTSPLGGADVVALRRLRQSLRRSEL 494 Query: 475 ALRGNKNSY----DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 A G + S + + L++ + Sbjct: 495 AAGGGRTSDAVLTSALAGALAAPATDLAAATGDLALLGADDPALGPAVRVALVLQAGRRA 554 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFS 589 + + + S + E + + L Sbjct: 555 LAAAAAGTSAETVLWHLWDASGLAARWQRAALAGAVVEGADAGRADRDLDAVLALFEAAG 614 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + ++ + +T+ + + + + + +D +++ G+ Sbjct: 615 RFEDRFPGAGSARRFLDQLMAAEVPSDTLADRAPDAGAVTLTTPQGAVGREWDLVVVAGV 674 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---- 705 EGVWP + L D+ G E H+ TR+ E Sbjct: 675 QEGVWPDLRLRGSVLGAQALVDVLQGRDPDGPGARRAVLEDELRLFHVAVTRAREELVVT 734 Query: 706 --NNIPTIASRWL--------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + S +L R + R +L P Sbjct: 735 AVRDEDERPSAFLDVVADAAGLRTRADEEEEPGLATVPRAVSLPALVARLRQVVCAPDAV 794 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------------ 803 A + + + + + ++ Sbjct: 795 ETPQRRAAAAARLAELAAAGVAGADPSEWYGVQELTDDGALRGPGEEVPVSPSRVESFER 854 Query: 804 ---------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-ID 853 G I L+ + ++ +++ +D + LP + Sbjct: 855 CGLRWLLESSGARPGDSTGQAIGNLVHRIASEAPEADAFELRRRLDLLWPTLGLPDGWVA 914 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 R ++ E+ ++ V + + ++ + G DR++ G Sbjct: 915 ETARARALRMVDKLAEYHRDARAEGR-TLVGVELDVDVQVGRARVRGRVDRLERDAEGRA 973 Query: 914 DITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + D KTG P + ++ PQL + A + G+F + ++ Sbjct: 974 VVVDLKTGKVQPSRAEVER--SPQLGVYQLAAQEGAFPAPPTGPTGTGGAVLVQLGGTQK 1031 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTL 1000 ++ ++ +L+ Sbjct: 1032 KAPVQHQRALDEDDDPGWAADLLARAAE 1059 >gi|322373658|ref|ZP_08048194.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150] gi|321278700|gb|EFX55769.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150] Length = 1106 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 136/965 (14%), Positives = 274/965 (28%), Gaps = 137/965 (14%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + L + L D+ ++ DL L + + L Sbjct: 95 SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTILDLQYLDQAE-------KQEDL 147 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247 + L+ + + + + HL K + +I G T L++ Sbjct: 148 VKIFSAAQDLLLAGDFDNQSKLSVFFEEINSGHLDKALSHTVLVIDGFTRFSAEEEALIA 207 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + ++ A + ++ L L + Sbjct: 208 LLNEKCHQIVIGTYASQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVTP 255 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + V N + R + +S T D + TD + + + E N+ Sbjct: 256 DYVTT-DKEGNPSFARISHLLESRHDFSTIDEQLTDQDK----------EALQVWEVVNQ 304 Query: 368 REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 REE +A ++R L + K+ L+ + + +V +F I +S+ Sbjct: 305 REEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSH 364 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + LVK L E N D Sbjct: 365 PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQEDLDL----------FEYYVNFAD 414 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 I + D A ++ D + L +++ + L+ + K S+ Sbjct: 415 IKGRHKFLSDFTANSRDKY------------DLDRINALRSQLVEPLDKLLNSRKQKGSS 462 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + V + + E+ K + L +I + + Sbjct: 463 LLKKLVAFLETVQVPSQMAALTAKASEAEKEQNEQVWKAFTQLLEQIETIFGDESLSVDD 522 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ I+ + + + + + + + G+ + +PK L Sbjct: 523 FLSILRSGMLACDYRTVPATVDVVNVKKYDLVQPHSAPYVFALGMTQSHFPKVGQNKSLL 582 Query: 665 SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713 S +S +N T E Q H M+ + L+ ++ N S Sbjct: 583 SDEERSRINEATDEHRSLDIVTQSNNQRGHFVAMSLFNAASEQLVLSQPQILNETLDDMS 642 Query: 714 RWLQRLLVLGG---------------------------------------TDFFDNLKKR 734 +L+ LL LG Sbjct: 643 VYLKELLDLGISLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSQLDADLDKETQTFWSV 702 Query: 735 GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 YL +D T + +P S S + N+ Y Sbjct: 703 AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLY 762 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843 + R +L L+ + PD GT H + ++ +N + + F Sbjct: 763 FLRYVLGLEELESIH--PDARHHGTYLHRVFERVMGDSSLENFDDKLEKAIAQTNQEQPF 820 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 E + R + I+ S + ++ + + I +TG D Sbjct: 821 ELLYTEDQESRLSRQILEDIARSTASVLR-DNAFVKVEREEAKFDLLLA-NSIKITGIID 878 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960 R+D L G + + DYK+G N QK + PQL AL+ ++D ++ Sbjct: 879 RVDRLTDGALGVVDYKSGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDANQLFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ ++ + ++ D+L+ + K L L E ++ + + Sbjct: 935 MYLHMQDP------QLNLAQFGLDKLAAHAHKELT-YKGLFVASETEHLAGGNYDLQKTV 987 Query: 1021 QSEYD 1025 YD Sbjct: 988 --TYD 990 >gi|94970648|ref|YP_592696.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus Koribacter versatilis Ellin345] gi|94552698|gb|ABF42622.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus Koribacter versatilis Ellin345] Length = 906 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 94/757 (12%), Positives = 207/757 (27%), Gaps = 95/757 (12%) Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 R ++ + +L + + + +A + +E + A+ R Sbjct: 183 DRFTPAQEALWRALRNAGCEVTVLAPESESNKDHARGLA---CADPSDEIRTSALWARKK 239 Query: 382 LDENK--KKSALITADRNLARRVKLELTRFGIN-------------IDISAGIPLSTTLH 426 L+EN + ++ L +IS G PLS Sbjct: 240 LEENPSARVGVIVPRLEGLRETFATIFEDVLHPENRLLTRTATARAFEISLGRPLSEHPM 299 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +L + + L++ G E + Sbjct: 300 VRAALRILRLATSSLNAEEFSALLRSRYIAGGTNEASARALVD----------------F 343 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +L+ + + + + + + + ++ K + G Sbjct: 344 ELRRKLRATVTLAQVLSGKAEEKVVGAPKMAKMLRAF---------------FAKPAKTG 388 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 L+ ++W L+ + +L EE + Sbjct: 389 KLTHTEWAAEAQRILRIMGWPGDEGEFSLNSEEFQVSKKWEELLKDFCALDQALPLKTAS 448 Query: 607 DIITRLIDGETVKPKIEKSS--TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +++ L ++ + I+G L + FD L GL++ WP+ NPF+ Sbjct: 449 EMLRELERAAAEATFAAENEAAPVQIVGPLAASGETFDALWFCGLSDETWPQKGHPNPFI 508 Query: 665 SRVMQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 +Q + + + R ++ S L + Sbjct: 509 PFALQKSAGAPNTSAEWNLRDGERRTARLLQSANECVLSWPQRNDDGELRPSPLLAGVP- 567 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + R L L+ + + + + ++ Sbjct: 568 --PATDLEIADVRDWNSLQKGALLERYDDEKAPAIA------NEELKRRGTTVLQWQSGC 619 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE----------- 830 P+ +A+ L + + + +RG + + + ++ + Sbjct: 620 PFRAFAQTRLAAEKLEESPLGANAIERGNIVDTALRFVWEELRESSNLNGGIPTMTLEFV 679 Query: 831 INHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 I +++ + F +E+ I R K+ H +L+ E K Sbjct: 680 IAGAIERALLEEFPSGEESWLVRHREIERERLSKLVHDWLDVERKRHPFHSVR---SQVN 736 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEAAA-- 943 + ++ + L G DR+D G + DYKT + +PQL + A Sbjct: 737 VTVKLGELELKGRIDRLDQTVDGEYVVIDYKTTRKDLATSLWEMPRPQEPQLPIYAVGQQ 796 Query: 944 -----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND-KKKYSADELSEKSLKNLIEI 997 + +F+Q+ K Y L + +I + + K E L ++ Sbjct: 797 LESHEVAGVAFAQVRAGKPK---YSGLATRKEIFGDSKNLAKFGEFAETLATWQPELEKL 853 Query: 998 VTLLQNGEQPFISHLRLS--EKSNIQSEYDHLARVAE 1032 L G + + L R+AE Sbjct: 854 AGELLAGHAEVDPKVPPGVTNTTCRHCHLGSLCRIAE 890 >gi|160872018|ref|ZP_02062150.1| conserved hypothetical protein [Rickettsiella grylli] gi|159120817|gb|EDP46155.1| conserved hypothetical protein [Rickettsiella grylli] Length = 889 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 99/729 (13%), Positives = 212/729 (29%), Gaps = 111/729 (15%) Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405 +P+ + + +AL + ++ +I + ++ + T Sbjct: 214 RISLPDKETEYQTMALWAYQSFQQSKKNIGCLIPHLVERRTHLLTIFTDIFTECAP--HS 271 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 + +I+AG PL +L+ F ++ +L++ P E+ Sbjct: 272 IDP--PPFNIAAGNPLLEFGLIQTALLILDLKAIN-TFSSLHSLLRSPYIGGFQREQSPR 328 Query: 466 RAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + + L R + N + + + K + + Sbjct: 329 ASLDIFLRGAENRLSLNQLITISEEQTCFILSRSLKTLLGLIKKYTCHFLAKP------- 381 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 S W+ V L R ++ L Sbjct: 382 --------------------------SFWSAYFVKKLHAFSWPGDRPFIREEYQ-----L 410 Query: 585 SSLFSKIIETGSCI-----KANAIEWIDIITRLIDGETVKPKIEKS-STLFILGTLESRL 638 +S+++ + + + + + + I + K + +LG L++ Sbjct: 411 LDCWSELLTAFAGLDFILGEISHDTALRHLRCHIANTLFQMKTLHDDPPIQVLGLLDAAG 470 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-----G 693 + FD L + G ++ WP NPF+ +Q + + M Sbjct: 471 MYFDELWVMGFDDKTWPAPAKPNPFIPYALQR--GQPIPSSSSEREYYFAAMLTKNLTAH 528 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + LI++ + + + S ++Q L + D Y +K+ + + + Sbjct: 529 AKKLIFSTAKQHLDETLRPSVFIQSLPEIKLNDL------HLPPYSTMAKKIMESQEWEY 582 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD--FIPHFKKDPDRTDRGTL 811 Y + ++ P+ +AR LK D +RG L Sbjct: 583 YSDECIALTEDNFISG--TQLLQSQAACPFQAFARWRLKARTHPFFPQNNGLDARERGIL 640 Query: 812 FHNIITELIKKRINKNT------PEINHLMKQIIDSHF------EKENLPPHIDIIWRHL 859 FH ++ + K N+ T +N + I++ + + R Sbjct: 641 FHRVLEQFWNKIKNQETLLSLTQHALNQHIHDAINTCLKIWSKKRPIIFKTYFATLERQR 700 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + + ++ E++ + + + L+ DRID L I DYK Sbjct: 701 LSSLLSTLIDLEKQR-PHFSETQHEKKQHLKL--GPFILSLRIDRIDKLDGNDAMIIDYK 757 Query: 920 TGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYI--------------- 963 T K + + D PQL L D + V + Sbjct: 758 TSRPQKIDWLDERCDYPQLPLYCL---------SDPKTVRSFSVWYCHRNRITLKGLSEE 808 Query: 964 --RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 LK + + + +L + +L ++ Q G H + + Q Sbjct: 809 ETSLKPLTPLKKLKTSHALHHWSDLLKHWQLSLEKLALEFQQGVN--HIHPKRGATTCRQ 866 Query: 1022 SEYDHLARV 1030 + L RV Sbjct: 867 CDLQLLCRV 875 >gi|261405599|ref|YP_003241840.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10] gi|261282062|gb|ACX64033.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10] Length = 1176 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 111/1031 (10%), Positives = 262/1031 (25%), Gaps = 135/1031 (13%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + G + + + S + + +S + + L +++ + + Sbjct: 50 ALVNAGGIRGMMRAQVLSFRRLAYRVMQETGGAA---KVAISEEGKRMLLYKILRRRKEE 106 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKY- 177 L L+++ ++ E L + + Sbjct: 107 LHMFGASGEQH-------------GFVGKLSELYTEMKRYCIDASCVEEQLGQMVSGSGN 153 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 + + + + + +L E I I G G Sbjct: 154 SPMLRRKLEDIVTVFRDFEVEISRFY-MDEEDTLASLAEGVTESEYIKRAD-IWIDGFHG 211 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 P R++ + H + LD + + T T+ L Sbjct: 212 FTPQEYRVLQEIIVHAKRVTIALTLDKPYRN------GTVPHELDLFHPTAVTYI--KLK 263 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++D + ++ E +V M+ D + + + Sbjct: 264 GIIDEIGLEAEHRILHPDVLPRFQESPMLAHLERGYDRKKRWAEPDEGPDTASSPNRGRK 323 Query: 358 DVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINI 413 + L A + R E + E + + + + + +G+ Sbjct: 324 GLLLHAASHRRAEIEGALREMLRLAQEEGARYREMAVFVRNMGDYEHLMGPLFREYGVPY 383 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 + + S L+ I + + + VK L + LE Sbjct: 384 FLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLT-REDMDRLEN 442 Query: 474 VALRGNKNSYDIMDLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 L D + V + + E +++ + + + Sbjct: 443 HVLASGIQGTRWTDGRPWKGVPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKRM 502 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + + L + L LD R + + L +I Sbjct: 503 KKAASATDQSTAVYRLLEECAVPEKL-ELLSRAALDAGRPEEAREHRQVWGAVLGLLDQI 561 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 +E K + + ++ + + + I +R L G+N+ Sbjct: 562 VEMMGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGIND 621 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF--------EMANGTRHLIYTR-S 702 GV P + L+ + L + E + + + ++ L + + Sbjct: 622 GVLPAQFQDDGILTEPERVHLEDRGLELAPSISRRLLDERFLIYNALTSASKQLWVSYPA 681 Query: 703 LRENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH------- 753 + P + S ++ L ++ + GQ L+ K Sbjct: 682 ADDEGKPLLPSEVVRHLKLMFQLEEEPLFPRPHAGQSALEQEGYAVRPDKTLAYLAGRLR 741 Query: 754 -------------------YKRPKPFPPLEAQPRTYS----------------------- 771 ++P P L + S Sbjct: 742 DWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETSRQLYGTKLRT 801 Query: 772 -FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-------TELIKKR 823 S +++ + P++ +A LKL D G LFH + + Sbjct: 802 SVSRMERFVACPFSHFASHGLKLRERQ--LYRLQAPDIGQLFHAALSSMAVKFQSQHRSW 859 Query: 824 INKNTPEINHLMKQIIDSH---FEKENLPPHIDIIWRHL-FHKISHS--FLEHEEKIQSS 877 + E + +D + E L + I + E+ + Sbjct: 860 GDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVILGEQARRGK 919 Query: 878 IEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLKSGF---VDITDYKTGDNP 924 E I + + + + + + G DR+D+ + + + DYK+ Sbjct: 920 FEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVIDYKSSQKD 979 Query: 925 -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYS 982 + + Q+ L + + + A Y + D + + Sbjct: 980 LRLHEVYYGLSLQMLTYLDVLLTFAEEWLGEQALPAGTLYFHV-----HDPVLQSANGMT 1034 Query: 983 ADELSEKSLKN 993 ++ +E+ LK Sbjct: 1035 PEQAAEELLKR 1045 >gi|171463386|ref|YP_001797499.1| inactivated superfamily I helicase-like protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192924|gb|ACB43885.1| inactivated superfamily I helicase-like protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 991 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 167/1084 (15%), Positives = 310/1084 (28%), Gaps = 156/1084 (14%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 K+P + I P+S ++ + + + N R + + T + +R+ Sbjct: 11 QKQPQAWAITPNSQALAQLARGVWDCAVQTNQRP-----------LVVLSTAGPLIGVRA 59 Query: 63 EFIE----ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 + LP + S D +E ++ S+++R L + + Sbjct: 60 ILEQNRPKDLLSSIAFLPQVISFTDWLE-----AAPGAWKFPKKQSDLERWLGVYATLRK 114 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 +N + + A LA+ + D L Sbjct: 115 HKNLQA-----------WFKAETESGAWGLAQAIVKACD-------------TLSTAVSS 150 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 F++ L Q +L ST + Sbjct: 151 QVQKQILGFIQKNQ----AETSNLGELCLSEAQASL-------------------DSTVA 187 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 + V + + + +T++ + + P Sbjct: 188 KVYSGMACKIVDQETKVLLEFWRYTASVSDPAFRNQFAIATHLEAIKSANPARPLI---- 243 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 ++ D D + +G + NE + VI D + E+ + + Sbjct: 244 WVETADPTPIDQEIIGALLNEYAQYAPVIEVKMDWHDVGLWSESIGAEDGDQARTQALEN 303 Query: 359 V--------ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 V LI A E A + A + L K AL+ DR +ARR + L+R G Sbjct: 304 VKRTQNKGWRLIAAKRFEELAWAAAKTIEQHLINGKTNLALVAQDRLVARRARALLSRLG 363 Query: 411 INID--ISAGIPLSTTLHSSILTSLLNAIFKLND---FMAIATLVKHPLAKFGFPEKYLS 465 ++ G LSTT ++ L S L I D + +++P Sbjct: 364 PALNIRDETGWKLSTTRAAAALNSWLELIKAPKDGPSAKTLLEFLQNPFL---------- 413 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L + R + L+ + W++ + + Sbjct: 414 ----DLGKILNRDAEACIG------LIAGLEDILVGSKAESGWKTFHIAIEGAQVNAAKN 463 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 T L L V L +L + GK L Sbjct: 464 ASAMPGTVLFELLQFARERHHEWLTLQVDCNKAYQLLQVNLQATGMAQSLEKDSAGKQLL 523 Query: 586 SLFSKIIETGSCI---KANAIEWIDIITRLIDGETVKPKI-EKSSTLFILGTLESRLLNF 641 + + + EW+ ++ +I+G + + E +TL IL +R+ +F Sbjct: 524 EVLKTFDLSKTQYQQTSVRLSEWLSLLKTVIEGASYQEAGKEAKATLSILPLSSTRMRDF 583 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYT 700 + +++ G +E P + F S + L T Q + D + Sbjct: 584 EAVVVVGCDEQQLPAYSEPPLFFSDALNQLLKTSTIAMQFVQQSRDLSQLLVSCPSVDLL 643 Query: 701 R-SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 S N P S W+QRL + K+ P Sbjct: 644 WQSKSNNGEPLRPSAWIQRLQNQVEWEAIPVQLKK-----------RAFEATPMVMTVAH 692 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 F P + S S K L + PY Y R +L L F + D + G H ++ Sbjct: 693 FEEDLPMPLSMSPSAYKALRDCPYRYYVRSLLSLRKNKEFDEGFDASLAGQTLHKLLKRF 752 Query: 820 IKKRI-----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--------RHLFHKISHS 866 N + + ++ + +I + K S Sbjct: 753 YHALKTHELTNPSLKTDEDQRRAWMEQSLNDYSEQEFAALIEGDARVMGTLRDWQKQIPS 812 Query: 867 FLEHEEKI-QSSIEKIFVNIPAKMAIESIG-------IHLTGFADRIDLLKSGF--VDIT 916 F++ + + Q+ E + + I + G+ADR D+ + Sbjct: 813 FIDWQLQREQAGWEYFDGEVKVGFNLPFQDADGNIKMIRIEGYADRYDVNVDNSKIASVI 872 Query: 917 DYKTGDNPKKETAQKLI--DPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK--FKI 971 DYK K + + I DPQL + A AA + +++ +V ++ LK Sbjct: 873 DYKNQRFEKVKARAEHILDDPQLLIYAKAANEEQESNKLTGYQVQQAEWVALKADISKGE 932 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLL--QNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 ++ + + + E V L + Q F E E + R Sbjct: 933 QKAVRSQEVADMPAIMRQFTVQMTEDVEQLWAKKPMQAF-----APEGICQYCEARGICR 987 Query: 1030 VAEW 1033 W Sbjct: 988 KGIW 991 >gi|239815307|ref|YP_002944217.1| exonuclease-like protein [Variovorax paradoxus S110] gi|239801884|gb|ACS18951.1| exonuclease-like protein [Variovorax paradoxus S110] Length = 864 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 115/816 (14%), Positives = 214/816 (26%), Gaps = 78/816 (9%) Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 AG A A + +A + S + Sbjct: 103 AGFAAERFALAGRVVELAYQLAPLAAAALPEVRGSEWAQRAAQVADAGSESEWFRIESAL 162 Query: 293 QYSLAKLLDFLDIKREDVKRLG-NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 + + R + L + + + Sbjct: 163 IRVAVAWAANSGYATDVLLRDTVRAQVDALIVLEGFQADPLTQTLCSLWGDRAIHLSLVP 222 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 + A A + +EA A + L E + ALI DR L RR+ +L G+ Sbjct: 223 ASPAATTAAAHVAADPEDEAELAAACVLRHLAEGRAPVALIATDRALTRRIGAQLQAQGV 282 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 G LSTT ++ + S L A + +K Sbjct: 283 TAHDETGWKLSTTRAAATVMSALRACAHDAGSDQVLEWLKSG------------------ 324 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 D +L + + V W + + + + + Sbjct: 325 --------------ADGDALATQALEARLRREGVREWSAWCGQAARSEKPQDIALLPFT- 369 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK-TLSSLFSK 590 + + + + ++DW + L+ E + G L + Sbjct: 370 ---EAVEGRRMAMARSRPLADWLRALRELLEAGEQWEPLAADMAGAKVIGALWLDADAHG 426 Query: 591 IIETGSCIKANAIEWIDIITRLIDGET-VKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + E+ + +++ + V P ++ + +L + F +++ G Sbjct: 427 DDDEFPGGRHTLAEFTAWVRDVLEDASFVPPAGNEAPQVVVLPLHQLLGRAFGAVVIPGC 486 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNI 708 ++ P + S +++L L E + A + R + Sbjct: 487 DDRRLPASPEPPGNWSAAQRAELGLPARETLEAAQRSAWAAALCNPCCEVLWRQSDASGE 546 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 P S +Q L + L + P P E P Sbjct: 547 PVRPSPLVQALQL--------------DHALQMAADPRTPREVALQPTAYPTPSGELLPL 592 Query: 769 T-YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 S S + L PY +A R L L + D+ D G H + + K Sbjct: 593 RNISTSVYEDLRRCPYRFFALRQLGLRSADELDAEVDKRDFGNWLHAALGHFHEALKEKP 652 Query: 828 TPEINHL---MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 T + + + + L + + + + +L+ ++S +F Sbjct: 653 TSDAAERVAYISAAAERATREFGLSDAEFLPFAAAWPAVRDGYLQWLAGHEASGA-VFAE 711 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT-GDNPKKETAQKL-IDPQLSLEAA 942 M + L G DRID + G + DYKT KE + D QL+ AA Sbjct: 712 SEPWMEQPLGSLQLVGRLDRIDRMPDGQAFVIDYKTESAAVTKERVKDPTEDTQLAFYAA 771 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA-DELSEKSLKNLIEIVTLL 1001 + Y+ + +K A D L L + I Sbjct: 772 LVAD---------DTLRAAYVNVGEKSSGTQTVEQPVVVEARDALVAGILDDFTRIAEGA 822 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 + L R W E Sbjct: 823 ALPPLGEGA-------VCDYCAARGLCRKDFWEIEQ 851 >gi|161830979|ref|YP_001597081.1| hypothetical protein COXBURSA331_A1374 [Coxiella burnetii RSA 331] gi|161762846|gb|ABX78488.1| conserved hypothetical protein [Coxiella burnetii RSA 331] Length = 862 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 105/698 (15%), Positives = 214/698 (30%), Gaps = 76/698 (10%) Query: 360 ALIEADNEREEAISIAIAL-RMSLDENKKKSALITADRNLARRVKLELTRFGI----NID 414 + N E ++A E +K + D R L L + + Sbjct: 214 RRVNFQNSEMEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFN 273 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 IS L+ + I L D M + T+ + + Sbjct: 274 ISVAESLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVC----------- 322 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV--LLVDHILQCIT 532 L + + ++ + P + + + L + Sbjct: 323 -------------LAAQLDVKLRESAHWQANPAFILYHLHQLQPHFQSTTLTTRCQTWL- 368 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 + L S W + L + R L + +++ + + L Sbjct: 369 --------SKRSSTRLFPSAWAQQFSEELTAIGWPGQRSLDSKEYQQWKRWENLLHEYAA 420 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + + ++ +L +P ++S++ ILG LE+ FD L + GLN+ Sbjct: 421 LDTFTQQQTRKNALQLLRQLAHHTLFQPMSSQNSSIQILGLLETTGHYFDKLWIAGLNDK 480 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIP 709 WP+ + NPFL +Q + A +I + L+E +I Sbjct: 481 KWPRVASPNPFLPLSLQRRCQMPHASAKREMEYTLQLQNRLLKSAPAIILSAPLQEGDIQ 540 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S ++ + D + + L + + E +P + Sbjct: 541 LSTSPLIRHFPEINNEDL------QLTAWQPLKAHLFKIKMLETIEDAQAPALQENEPMS 594 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ P+ +A+ L+ + + +RG H + + KK + T Sbjct: 595 GGSGLLQSQSICPFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTL 654 Query: 830 E--INHLMKQIIDSHF-----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + ++ IID +++ + P + ++ ++L E+K E Sbjct: 655 NSSSDGELENIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKNWLLLEKKR-PPFEVSQ 713 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLE 940 + I + L DRID I DYKTG + +L QL L Sbjct: 714 RETKRHIKI--GPLRLEVRIDRID----NNCFIIDYKTGGQNSVDDWFGDRLKSIQLPLY 767 Query: 941 -AAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 A A + +++++ +K+ I +KF + +EL + L Sbjct: 768 CAYAAREATGIAYAEVRSQKMTFKGLISANEKFNSFSEVK-PSPLAWNELIRRWKMQLYH 826 Query: 997 IVTLLQNGEQPFISHLRL--SEKSNIQSEYDHLARVAE 1032 + +G+ + + S+ L R+ E Sbjct: 827 LAVDFSSGK----ADVDPLDSKTVCKVCHLHSLCRIGE 860 >gi|210617938|ref|ZP_03291824.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787] gi|210149077|gb|EEA80086.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787] Length = 1134 Score = 180 bits (455), Expect = 2e-42, Method: Composition-based stats. Identities = 110/904 (12%), Positives = 239/904 (26%), Gaps = 121/904 (13%) Query: 150 KNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + +I + + E L + E K +K + E L E + Sbjct: 120 GEVKSVISEFTQYDIQEETLEQMIEEVKDSSNLYYKLQDIKTIYHGFREYLREKYIT--G 177 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + ++ +++ G TG P +L+ + ++ + Sbjct: 178 EELLDVLCTVVGESKILKDSVVVLDGFTGFTPVQNKLLRELFGVCKRVVIT--VTMEQKE 235 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 ++ S +++ L ++ K +Y R + Sbjct: 236 NPFSYKHPYQLFALS-------------KQMVTSLITIAKETKTDVEEPIYLYDRPIYRF 282 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 + + + + Q C + + A N +EE A +R Sbjct: 283 RENTALAFLEAHLFRYSKEQYEKEQDC---IQVYCAKNPKEEVDFAAQKIRNLARTRGYR 339 Query: 387 -KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 ++ A+I +D N + I I + + + SLL + + + Sbjct: 340 YREIAIIASDLNTYGNQIEKIFGEYQIPIFMDHKRSILLNSFVEYVRSLLAMVEQNFSYE 399 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ ++ L F E + + I K I + Sbjct: 400 SVFRYLRTGLTGFSDEEID-----------IVENYVIALGIRGYKKWQEKWIRRARGMEE 448 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + +E + + D + T + L + K Sbjct: 449 TELERINDIKERF--LIQVEDVTMVLTKRNKTVSEVTKALYDFLVKEELQKKVKEYEIRF 506 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 D + + + + LF K +E + E+ +++ ++ V Sbjct: 507 GNDGELA-LEKEYGQVYRIVIELFDKFVELLGEEQIALKEYCELLDAGLEEAKVGVIPPS 565 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAE 678 + +R+ + + L G N+ P LS + A+ Sbjct: 566 LDQVVAGDIERTRIKDIKAVFLLGANDMYIPGKENAGGILSEHDRELFQKGGVVLAPGAK 625 Query: 679 KYIGQAAHDFEMANG--TRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR- 734 + + + L T S + + +Q L + + + Sbjct: 626 EKAFIQKFYLYLLMTKPSEQLYVTYSKVSADGKTLRPAYLIQDLRRMYKKMEIQDADCQP 685 Query: 735 -------------------------GQCY----------LDWTRKLDYTTKQPHYKRP-- 757 G + W +K++ + Y++P Sbjct: 686 DKKELTPKSGFAYLIEKLQKKHEGLGTEWQELYTWYRQNPKWRKKIEQIVEACFYEKPKD 745 Query: 758 ----KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 + L S + +++ YA + L L + D G +FH Sbjct: 746 GLTTRTAQRLYGTILENSVTRLEKFSACAYAHFLSYGLNLRERE--EYTFQAIDLGNIFH 803 Query: 814 NIITELIKKRINKN-----TPEINHLMKQIID------SHFEKENLPPHIDIIWRHLFHK 862 + I KK + PE+ + + + Sbjct: 804 SAIEHFAKKLEAEGYTWTTLPEVRREELIEESVEESIVDYGNTILYSSARNEYIIKRLKR 863 Query: 863 ISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRID--LL 908 + + ++ + I +A++ G + L G DR+D Sbjct: 864 MMRRTVWALTKQLEKGDFMPGGYEISFGGASGLSTSDIALDGHGRMRLRGKIDRVDICED 923 Query: 909 KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDC-RKVANLFYIR 964 + + DYKTG + QL L AL+ S A +FY + Sbjct: 924 EDNVYVKVIDYKTGAKAFDLGELYYGLQLQLVLYLNTALELESRKNHGKTVIPAGIFYYQ 983 Query: 965 LKQK 968 +K Sbjct: 984 MKDP 987 >gi|73663118|ref|YP_301899.1| ATP-dependent nuclease subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642146|sp|Q49WA5|ADDB_STAS1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|72495633|dbj|BAE18954.1| putative ATP-dependent nuclease subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1153 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 118/986 (11%), Positives = 269/986 (27%), Gaps = 136/986 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIA 191 +S L L S ++ L + I + + L + + + Sbjct: 104 QSELRLYQSQVKYYGFSEKLYEQIQDFKKYAVSPQQLETYIAENNLQTRTKHKLQDIALV 163 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K+ +R+ S+ Q + + +K + I I G +++ ++ Sbjct: 164 YKHLEDRINGEYVSTEDSLQRFIEMMDQSEWLK--RAEIYIDGFHNFSTLEYQIIQSLVK 221 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + ++ D ++ + TH + ++ + L+I+ + Sbjct: 222 YAKKVTIVLTTD----------GDRDLFSLFRKPSESLTHIE----EIANNLNIQLHSRQ 267 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 L R + L + + ++ I +V ++EA REE Sbjct: 268 FLDVQ------RFIHNDLKHLEQNFNALQFEPIP---------TEGNVEILEASGMREEI 312 Query: 372 ISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + E + A++ D + A ++ L ++ I +I ++ Sbjct: 313 NEVARRILRENREQGRRFQDIAILYRDESYAYLMESILPQYDIPYNIDVKSSMTHHPIME 372 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++ SL+ I F + L K + F + + LE L +D Sbjct: 373 MIRSLIEVIQTGWQFDPLMRLFKTNILTKKFKDSQYL--IDILENFVLERGIYGKRWIDD 430 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKNST 544 K +++ + R + E V + T + Sbjct: 431 KYFDIEQFRKMGLKRQPLTDEERETFERVIQLKNDVMKKVMLFEEKINNASTAIAFATAF 490 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + D +T + ++ ++ L + ++ + Sbjct: 491 YEAMEAFDLPSQLMTDRDTLDVNGE-HKKAEEIDQIWNGLIQILDDLVTVFDDQSMSKTR 549 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++++ ++ + + I +++ N + L G N+GV P+ + + Sbjct: 550 FLELFDIGLEQLEFIMIPQTLDQVSIGTMDLAKVDNKQHVYLVGANDGVLPQTVTASSLI 609 Query: 665 SRVMQSDLN-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNIPT-IASR 714 + + TA+ A M H+ ++ +L + S Sbjct: 610 TDEEKKYFQEQSSIELSPTADILQMDEAFVCYIAMTRSRAHVTFSYALMGASGDVKEPSP 669 Query: 715 WLQRLLVL------------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------ 756 +L ++ L + ++ Q + L Sbjct: 670 FLHQIQQLYTNLEVQNIHHQHQAEPLRLMEHPHQTKIALFESLKAWLDDELVAETWLDTY 729 Query: 757 ------------------------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 P L S S + P+ + Sbjct: 730 QVMRNDTRLNDGLTYLLSALTYDNQTVQLNPSLSKALYGSTINASVSRFEGYQACPFKHF 789 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 A L+L+ K + D G +FH ++ + +K + ++ + Sbjct: 790 ASHGLRLNER--TKYKLENFDLGDIFHRVLKFISEKVNGDFKNLNPKQIHKLTTEALSEI 847 Query: 847 NLPPHIDII--------WRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAK-------- 888 +++ I + L + S + Sbjct: 848 LPEVQFNLLNSTAYYRYLSQRIGAIVETTLTALKYQGSHTKFTPQRFEASFRRKPKDQSE 907 Query: 889 ------MAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGD---NPKKETAQKLIDPQ 936 + I I++ G DRID + G V+I DYK+ + Q Sbjct: 908 LLATPLQTKQGIPINIRGQIDRIDTYQQGDESFVNIIDYKSSKYSGTLDLTKVYYGLQMQ 967 Query: 937 LSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + D K L Y + + + E L Sbjct: 968 MMTYMDIVLQNKSRLGLTDMTKPGGLLYFHVHEPRIKLAWNQLSEDKRDTEFINSFK--L 1025 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNI 1020 ++ + F + L S S+I Sbjct: 1026 SGLLNSATSVLDAFDTRLEPSYNSDI 1051 >gi|330721703|gb|EGG99704.1| RecB family exonuclease [gamma proteobacterium IMCC2047] Length = 464 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 80/468 (17%), Positives = 163/468 (34%), Gaps = 44/468 (9%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++TR++ + + ++ + +LG LE LNFD + L GLN+ +WP NPF+ Sbjct: 3 LLTRVLGSTDFQAQTPQTP-IQVLGMLEGSGLNFDAVWLVGLNDHLWPAAANPNPFIPIP 61 Query: 668 MQSDLNLK--TAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 MQ + + E+ + + + + +I + SL + P AS + + Sbjct: 62 MQQQFAMPHASPERELQFSRELLRDYLHSSAQVIASYSLNNGDEPLRASSLIDDFVATTK 121 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-KRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 Y + + Y P ++ + + +K P+ Sbjct: 122 DQLNLVTDTSHPFYRELANSSESFRALEPYNDDTGPTLNIDTERVVGGSALLKDQAACPF 181 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL--MKQIIDS 841 +A L +P D RGT+ H + +L + +T ++Q + Sbjct: 182 RAFANHRLSARDLPEPSYHLDAAQRGTVLHAALEQLWLTLKDSSTLIARDATVLQQDMSD 241 Query: 842 HFEKENLPPHIDI----------IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 K P ++ +L+ E+ + + + + I Sbjct: 242 AVRKALKPLIAQRDDLFGAVYTDNEAQRLQRLLARWLQIEKSRSA-FDVVATEKALVINI 300 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + + DRID L G + + DYKTG + K ++L +PQL L + S Sbjct: 301 ADMPLRV--RVDRIDRLDDGSLMLIDYKTGFCSTSKWQGERLEEPQLPLYMVTMAGISEP 358 Query: 951 QIDCRKVANLFYIRL-----------------KQKFKIDCITNDKKKYSADELSEKSLKN 993 Q + ++ +L + R+ + I+ S +++++ L++ Sbjct: 359 QGEQDRIESLAFARINIDQQGFVGISAQEGVAAGVYSIEKSRGWDASLSWSDINQQWLQS 418 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV---AEWREEYD 1038 L + + + L + L R+ E E D Sbjct: 419 LESLANEF---KTGVATVAPLQNNTCQFCHLHSLCRIHQLNELSSEAD 463 >gi|306831078|ref|ZP_07464239.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426644|gb|EFM29755.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1082 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 123/1044 (11%), Positives = 279/1044 (26%), Gaps = 150/1044 (14%) Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + K + + EK A L L + + R ++AR + Sbjct: 19 EAVAQADAGKRVF---YIAPNSLSFEKERAVLELLPDEASFAITVTRFAQMAR-YFVLNE 74 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAK---------------NLADIIDIIETEEKKW 166 + + + + + L D+ ++T Sbjct: 75 AQAQVKESIDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTV 134 Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 DL L + L + L+ + + EA HL Sbjct: 135 LDLTEL-------HSAEKQEDLVKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATL 187 Query: 227 KGP-IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + ++I G T L+S + I+ + + Sbjct: 188 ENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVII----GTYSSQKAYRAA----------- 232 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 + Q SL L L K + S ++F D Sbjct: 233 FSTGNVYQASL-DFLRGLAAKFH-------AQPQYVESSQKSHEAFSKLSKLFEAKHDFT 284 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVK 403 + + A+ + N++EE +A A+R L + + ++ D + R Sbjct: 285 SSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQI 344 Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 ++ I +S + SL + L+K L Sbjct: 345 GKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGL-------- 396 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 GN D+ + ++ ++ ++ Sbjct: 397 --------------YGNFKQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNR 442 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + I+ + L + + S+ ++ + + + + E+ + Sbjct: 443 MREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWR 502 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 T + + ++ K + + + +I + + + + Sbjct: 503 TFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK 562 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN--- 692 + G+ + +PK + +S ++ +N T + ++ + F + Sbjct: 563 FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFN 622 Query: 693 -GTRHLIYTRSLRENNIPTIASRWLQRLL------------------------------- 720 T L+ + N S +L L Sbjct: 623 SATEELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRV 682 Query: 721 ----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP---------------FP 761 L + + K+ + R L + P Sbjct: 683 IEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAESIELPLIKDNMQTKTVSADVIEAR 742 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + + S S + N+ Y + + +L L + PD + GT H + ++K Sbjct: 743 FPSDELISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMK 800 Query: 822 KRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 N + Q ++ F+ + I+ S + I+ Sbjct: 801 DDSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQ 859 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLS 938 ++ I + + G DR+D L G + I DYK+ N + + PQL Sbjct: 860 VESEEETFELMIA-NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLV 918 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 AL+ + + Y+ +++ +K + E + + L Sbjct: 919 TYVQALRDKKGLS-ESEHIFGAMYLHMQEPKVDLSSVATTEKILENLAKELTYRGL---- 973 Query: 999 TLLQNGEQPFISHLRLSEKSNIQS 1022 E+ ++++ R ++ S Sbjct: 974 --FLEDEKAYLANGRYHLNDSLYS 995 >gi|312863156|ref|ZP_07723394.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396] gi|311100692|gb|EFQ58897.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396] Length = 1106 Score = 179 bits (453), Expect = 3e-42, Method: Composition-based stats. Identities = 135/943 (14%), Positives = 272/943 (28%), Gaps = 137/943 (14%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210 L D+ ++ DL L + + L + L+ + + Sbjct: 117 QLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLVRIISAAQDLLLAGDFDNQSKL 169 Query: 211 QIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + HL K + +I G T L++ + + + +V A Sbjct: 170 SAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYASQKAYRA 229 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + ++ L L + + V N + R + + Sbjct: 230 NFVYGNVYQASVDF------------LRTLAQTYKVTPDYVTT-DKEGNLSFARISRLLE 276 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK- 388 S T D + T+ ++ + + E N++EE +A ++R L + K+ Sbjct: 277 SRHDFSTVDEKVTEQDKH----------ALQVWEVVNQKEEVAQVAKSIRQLLADGKRYK 326 Query: 389 --SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + + +V +F I +S+ + SL + Sbjct: 327 DILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRTEDL 386 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 LVK L EL N DI + D A ++ Sbjct: 387 LNLVKSGLHGGF----------AQEELDLFEYYVNFADIKGRHKFLSDFTANSRDKY--- 433 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 D + L +L+ + L+ + K S+ + + V Sbjct: 434 ---------DLDKLNALRSQLLEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSKMAALT 484 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + + E+ K + L ++ + +++ I+ + + Sbjct: 485 AKASEAEKEQNEQVWKVFTQLLEQVETIFGKETLSVDDFLSILRSGMSACDYRTVPATVD 544 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY------ 680 + + + + + G+ + +PK LS +S +N T E Sbjct: 545 VVNVKKYDLIQPYSAPYVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVT 604 Query: 681 --IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL---- 731 Q H M+ + L+ ++ N S +L+ LL LG Sbjct: 605 QSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMSVYLKELLDLGLPLVEKGRNRFE 664 Query: 732 -----------------------------------KKRGQCYLD---------WTRKLDY 747 YL +D Sbjct: 665 AKGDQIGNYRDLLSTVIALNSSHLDVDLDKDTQTFWSVAVRYLRKRLDKDQVLIPTVIDD 724 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 T ++ +P S S + N+ Y + R +L L+ + PD Sbjct: 725 VTTTKVDEQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIH--PDARH 782 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISH 865 GT H + ++ ++N + + FE + R + I+ Sbjct: 783 HGTYLHRVFERVMGDSSSENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIAR 842 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 S + ++ + + I +TG DR+D L G + + DYK+G N Sbjct: 843 STASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIIDRVDRLTDGALGVVDYKSGKN-- 898 Query: 926 KETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 QK + PQL AL+ ++D ++ Y+ ++ Sbjct: 899 VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAMYLHMQDPQLNLAKFG------ 950 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 D+L+ ++ K L L E ++ + + YD Sbjct: 951 LDKLAAQAHKELT-YKGLFVASETEHLAGGNYDLQKTV--TYD 990 >gi|149371104|ref|ZP_01890699.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49] gi|149355890|gb|EDM44448.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49] Length = 908 Score = 179 bits (453), Expect = 3e-42, Method: Composition-based stats. Identities = 89/436 (20%), Positives = 162/436 (37%), Gaps = 41/436 (9%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + +LI T+ K + L I+G LESR+L+F +I+ +NEG P + F++ Sbjct: 475 LYKQLIGTTTLDYKGDAYDGLQIMGVLESRVLDFKNVIMTSVNEGTLPSGKSNASFITYD 534 Query: 668 MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGT 725 ++ NL EK A H + ++ + + I T SR++++L V Sbjct: 535 LKQQYNLPKYTEKDAIYAYHFYHAIQRAQNCTLLYNTHSDGINTGEKSRFIKQLEVYNLP 594 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + G D + + T K+ S S + I +P Sbjct: 595 EHNLTKSVIG-HTTDISAPVKKTVKKTDAVMDIIKKIGTRYY---SPSALTAYIRNPIDF 650 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-----KKRINKNTPEINHLMKQIID 840 Y +RILKL + ++ GT+ HN + L K+ +N + L++ + Sbjct: 651 YFQRILKLKELEEVEETVAANTMGTIVHNTLENLYTPLINKRLTAENLKALLPLIENEVK 710 Query: 841 SHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIES 893 F E + ++I + K +F++ E K ++ +I V K +E Sbjct: 711 RQFTDEYKEGDYTKGKNLIIFEVVKKFVQNFIQLELKDVAAGNEIVVQSLEEEFKETLEI 770 Query: 894 I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPK-----------KETAQKLIDPQLS 938 + + G DRID +G + I DYKTG KE + Q+ Sbjct: 771 PSINSSVIIGGKVDRIDRY-NGTLRIIDYKTGKVAASDLYVIDWDVIKEEYKYSKAFQVL 829 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS-----LKN 993 A + + + + L F I + + + + + + Sbjct: 830 TYAFICQKK--YGFTTAEAGIISFKNLNAGFLKFGIKPSPNARTVNTIIDAAVLENYKEQ 887 Query: 994 LIEIVTLLQNGEQPFI 1009 LI +++ + N E PF Sbjct: 888 LITVISEIYNPEIPFT 903 Score = 105 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 66/446 (14%), Positives = 122/446 (27%), Gaps = 95/446 (21%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 + L + Y N LA +TI +P+KRA L + + T +T P + ++ + Sbjct: 1 MQTFLEDTLDYLEDNYQSLADLTIVLPSKRAGGFLMNHLKKRTKH-TTFSPRVINIESFI 59 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 EE ++ + L L + + + K+ + E Sbjct: 60 EEVADLKIIDNTQL------------LFKSYAAYLSLKKIKEKESFEEYS---------- 97 Query: 146 IWLAKNLADIIDIIETEEKKWED-LHALKNEKYGMWW----------LLAADF---LKIA 191 A L + I+ + + L + + W +F L Sbjct: 98 -SWATTLLGDFNEIDRYLLDHDSFFNYLTSIQDVNHWYLNSEKTPLIQNYLNFWESLPEF 156 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + + L++ N ++ + I G A +M + + Sbjct: 157 YEKLKDDLLKTNTGYQGLVNRIATEEIEHYISANKQTKHIFVGFNALNKAEQVIMQELVS 216 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 N A +L D + TH +L Sbjct: 217 A-NMAEILWDTDQY-------------------FIKNKTHSVSLFMRL------------ 244 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 D N K + L+EA + Sbjct: 245 ----------------------YLKEWPLYKDKPFTTTQNNFKLPKTIHLVEASKNISQV 282 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 + L E ++A+I AD L + L ++++ G+PL+T S Sbjct: 283 KYVGNLLSNMPKEEINQTAIILADEALLIPMLHSLPENVEKVNVTMGVPLTTFPLVSFFD 342 Query: 432 SLLNA---IFKLNDFMAIATLVKHPL 454 LL F I ++ HP Sbjct: 343 ILLQFKFKQGDHIYFRDIINILSHPF 368 >gi|114566669|ref|YP_753823.1| ATP-dependent nuclease subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337604|gb|ABI68452.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1124 Score = 179 bits (453), Expect = 3e-42, Method: Composition-based stats. Identities = 115/956 (12%), Positives = 263/956 (27%), Gaps = 144/956 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 ++ ++ + + EDL E + I +++ + E Sbjct: 117 GFINQISQLMADFKQRHIRPEDLQLDAEEMPDQIIKEKLKDISIIYQHFNRYM-EGRYID 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 Y L+ EH + I G T P T +++ + + LD Sbjct: 176 SEDYMDLLIEKL-EHYTSLKNARVWIDGFTTFAPQTLKIIEKIMVMARDTTICFTLDPDT 234 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + Q + L + V + + + Sbjct: 235 WD---------IAELDLFQLPGRSFRQIRAMVRKNALQEEIIQVDPRPAEMLKSPEINHL 285 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 ++ F P + K ++ L A N E ++A + + Sbjct: 286 EAELFAYPGKT--------------FAKKPQNIELFAASNIYSEVEALAAEFLLLARQGY 331 Query: 387 K--KSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + A++ D + ++ +GI + + + ++ + L + + + Sbjct: 332 RWKDMAVVCHDLDRYGSLIRRTFRDYGIPCFMDRKRDIMSHPIIELILAALEILSRGYRY 391 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 + T +K + E + ++GNK D + L + ++ Sbjct: 392 EDVFTYLKTGFSDLTVDEVEILENYAL--EYGIKGNKWKEDFSYGDAESLIELNQKRLLF 449 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + + + + Y + T L+ + Sbjct: 450 TKPLEDLGVMLKGNNTIREMAQALFAFLERENIYSKLEKWTNDLLARGFLEEA------- 502 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + + +++E K N E+ I+ +K Sbjct: 503 -----------SESSQLWNAMIEILKQMVEIMGEQKVNLKEFKRILEAGFLSLEIKIIPT 551 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKT---A 677 + + S+ + L + G+N+G+ P + LS + L L Sbjct: 552 TVDQVLLGDIQRSKSHDIKCLYVIGVNDGILPSLGREEGILSETEKEALQEKGLDLGYER 611 Query: 678 EKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 E + A + ++ +L + S + +L ++ + Sbjct: 612 EMIWEEERFLIYSALAKPAERIYFSYALADEEGRALRPSLLIDQLRMIFPSLSLKTNLLE 671 Query: 735 GQCYL------------DWTRKLDYTTKQPHYK--------------------------- 755 + + KL + Sbjct: 672 DRQWQLQMVATPESSFKHLVEKLRLGLDGKELEDFWWDVYRWYFEQESWQCSRKLLLQGL 731 Query: 756 ----RPKPFPPLEAQ-----PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 +P+P P ++ P S S ++Q ++ P+A + R L + + Sbjct: 732 FHQNQPEPIEPQVSRRLFGTPLRSSVSRLEQFVSCPFAHFVRY--GLQPQERKNYELNSP 789 Query: 807 DRGTLFHNIITEL---IKKRINKNTPEINHLMKQIIDSHFEKENLPPH--------IDII 855 D G LFH+ + +++ + IID+ ++ Sbjct: 790 DLGLLFHDSLLHFSHKLRENNRQWLDLSKEECYAIIDTVVDEIVPSFGRGIFNSHPRYQY 849 Query: 856 WRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFAD 903 + +IS ++ E Q + + ++ +E+ + L G D Sbjct: 850 LLNRLKRISRRAVWILTEHIQQGDFKPWDYEVAFGRGGMLPAVEIDLENGEKLILEGRID 909 Query: 904 RIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKV 957 R+DLL+ V I DYK+G + QL + A + Sbjct: 910 RVDLLEFEESCYVRILDYKSGQQDFHLSEVFHGLSLQLMVYLKALMTAWEQMEKKQAV-P 968 Query: 958 ANLFYIR-----LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 A +FY + + + KI + + +IV + + Sbjct: 969 AGVFYFKIDDPMINSEEKIVEVVEKEIAKKLKLKGLVLADA--KIVRRMDREVNGY 1022 >gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398230|gb|AAS05851.1| hypothetical protein MAP_3301c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1044 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 113/1022 (11%), Positives = 256/1022 (25%), Gaps = 137/1022 (13%) Query: 59 ELRSEFIEITG-KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLIL 117 L + + G + P+++++ + P RL+ A Sbjct: 72 ALTTALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPP------RLVTSAEQDA 125 Query: 118 IWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 I R L + D + + + A L +++ + L L Sbjct: 126 IIRELLAGDLADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRR 185 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 W+ A F + + V A + A G + G+ Sbjct: 186 CRRPEWVAAGQFARQYEQ--------------VMLLRAAVGTAAPEATTPALGAAELVGA 231 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 A + +++ P A + + + Sbjct: 232 ALEAFAVDAELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGADLALIAGDPNQAVFG 291 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQK 354 + + + R +I Sbjct: 292 FR------GGDPGSLLDGAAPAVTLTRSHRCAPAVARAVSGVAGRLPGSSAGRRIEGAGP 345 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFG 410 VA+ A + EA +IA ALR + + + + ++ + R+ L G Sbjct: 346 GEGSVAVRLAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAG 405 Query: 411 INIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + + A PL+ L ++L A D L+ P+ + R Sbjct: 406 VPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR--- 462 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 L + D +L L A + + Sbjct: 463 -RNLQRANAGRPPGDFAELLVEALTGTAP-------------PPGAPFRALRRVRAVLDA 508 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + S + ++ + + +L ++ + Sbjct: 509 AGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV 568 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 A+ ++ + L + + + +L + +D +++ GL Sbjct: 569 -----SRTSGASLRGLVEHVAAL--QLPGAEPVATAEQVSVLSAHAALGREWDFVVIAGL 621 Query: 650 NEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 +G+WP + L S L E+ + AA Sbjct: 622 QDGLWPNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARQRLLVTA 681 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYK 755 + + + + + S + + G D L + Sbjct: 682 VDSDTDGSDREAALPSPFCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAP 741 Query: 756 R-----------------------PKPFPPLEAQPRTYS---------------FSEIKQ 777 P P S S ++ Sbjct: 742 DGAVDELDRRCAATQLARLAKAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQT 801 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L + P A R D + G++ H +I + +++ E+ + + Sbjct: 802 LTDCPLRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDR 850 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESI 894 + + +F + + ++ ++ V + + + Sbjct: 851 VWRHLPFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGR 907 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQID 953 + L G DR++ +G + I D KTG P + + QL+L A+ G + Sbjct: 908 EVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGG 966 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISH 1011 + + + + + ++ D L+ + E + + FI+ Sbjct: 967 DAEPGGARLVYVGKAAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIAR 1021 Query: 1012 LR 1013 Sbjct: 1022 RN 1023 >gi|323341190|ref|ZP_08081437.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644] gi|323091384|gb|EFZ34009.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644] Length = 1170 Score = 178 bits (452), Expect = 4e-42, Method: Composition-based stats. Identities = 114/1034 (11%), Positives = 284/1034 (27%), Gaps = 157/1034 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S+ + + R++ +++L + + LA + ++ Sbjct: 92 PRISSAGSNMIIYRILRDLKDEL-------------QVFSGGESQPGFITQLAKQMTELQ 138 Query: 161 TEEKKWEDLHALKNEKYGM------WWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214 ED+ + + L + + E ++ + + Sbjct: 139 NGCIMPEDVMQMAEKLPKESLGSKALLRSKLHDLALVYTRFIEMTSGRYLAN-----MEI 193 Query: 215 MRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 + ++L +I+G L+ + + +V L+ Sbjct: 194 LTELTQYLEKIDLQNSCFLISGFNQMTAREMLLVEKLIENAESVVVDLVLNHPY------ 247 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 + E + + + Q + + + VS ++ Sbjct: 248 -VDEPPKSGDLFYRAGNLYYQLYAHAHKSKSPVMLDTYAKKTRVSQDLCNLEDY------ 300 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKS 389 N+ + V + A EE A +R + K Sbjct: 301 ------WINSVAGFSAKEKATFENDSVKIYGAKTRTEEIRFAAAKIRQMVAVEGYRYKDF 354 Query: 390 ALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++T +L + V + + I + +S +L +L + + + Sbjct: 355 LILTRHLDLYKNVLEPIFAKAKVPIFVDLQKKVSDHPLVELLNALFAVKRRHYRYNDMMR 414 Query: 449 LVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+K L + R + E + L+ + K + R T Sbjct: 415 LLKTELLIPKDLKVETYRRMLDQTENLILKFGYEGSAWLKEKDWIYYRFGESDFGTRT-D 473 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNV 564 + R+++E + + + + + + + + ++ K QN+ Sbjct: 474 AEDRITKEVNVIRRYVKEILPPFFKQIDEAENGRKAAVCLVNFLVDNGVKKRLEDWRQNL 533 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + + E+ + + +E + ++++++ D + Sbjct: 534 ME-QGLLQESERPEQVWNLFCQMMDEFVENLGDLPFEEEDFLNLLQTGFDAGEYRRVPAS 592 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLNLKTAEKYI 681 + I T + + + + G + V P LS +S + L + + + Sbjct: 593 LDEVSISETGMVQPTDRKVVFMIGSTDLVMPDRIQNKSLLSDGDRSLMLENALLSENQVL 652 Query: 682 GQAAH----------DFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFD- 729 + + + T LI+T + + S +++R+ + + Sbjct: 653 DETSEKSMLSEPFLNYLAFLSPTEKLIFTYPHGNDADGGIKMSPYVERIKQHFLLEELEI 712 Query: 730 ---------------------NLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------- 758 + +++ K + + Sbjct: 713 SEFDKLSTPKGTIEDLICEIRRHADEKNSVPAFWKQVYAKMKTVDAEMTEKVMSSLRYRN 772 Query: 759 -PFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 P R S S+++ +PY + R L L F+ G+ Sbjct: 773 IPEQLTAQNARKLYGKELNTSISKLETFYKNPYEYFLRYGLGLMERDVFE--MSAASTGS 830 Query: 811 LFHNIITELIKKRINKNT---PEINHLMKQIIDS---------------------HFEKE 846 FH ++ + N + +I + E+ Sbjct: 831 YFHAVLDAFFRLLFKNNLTLKNLSSEQFNEIFEETTSLVSKDPQFMILKSSNRMGFIERL 890 Query: 847 NLPPHIDIIWRHLFHKI--SHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTG 900 +W + L E + V K + + +++ G Sbjct: 891 LNDTLSQTLWAVRNQRNYGHVRTLRTEAL----FGHVGVEEGLKGLLIKTPKGNQVNVRG 946 Query: 901 FADRIDLL---KSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID ++ + DYK+G A I QL AL+ + + + Sbjct: 947 KIDRIDETIGAGDKYLGVIDYKSGARKFNYAQAYYGIALQLLTYLDALEQNAELVLPNEQ 1006 Query: 957 --VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI----EIVTLLQNGEQPFIS 1010 +A Y+ L+ ++ + ++ + L+ ++++ L + S Sbjct: 1007 SKLAGALYLHLQNPRLKPSEVKADEQKTL--IASHGYQGLLVSDPDLLSTLDETVEEKSS 1064 Query: 1011 HLRLSEKSNIQSEY 1024 L L K Y Sbjct: 1065 SLFLPFKRLSGGTY 1078 >gi|291571373|dbj|BAI93645.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 879 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 116/900 (12%), Positives = 248/900 (27%), Gaps = 181/900 (20%) Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 L + + + L + + + P++I G Sbjct: 103 HNSRRIRDLAQVTNLYKQELFKQGYIDQDELFWQAINFQ------PKPQPLLIYGYFQPQ 156 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P ++ VA + VLP I + Sbjct: 157 PDQVEFINLVAG-EDSIWVLPTGKAEFFAKNREAIAYLESEGW----------------- 198 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + + + L+N + + ++V Sbjct: 199 -----------------------------QVNYQENNDNFSLGEQLQNCFVDKGEITNNV 229 Query: 360 ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDIS 416 N E + ++ + E + ++ L+T D + L++ + + + + Sbjct: 230 QCHIYSNLEAEVRGVLSQVKQLMIEGISAREIVLVTQDEKTYAPLLLDMAWEYQLPLRLF 289 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 IPL S + L+ I F + A L+ HPLA + A+ Sbjct: 290 YKIPLRNIRLGSWIALLIEVIENNFPFESTAKLLHHPLA-QYLTYQQWLEARQKRPHN-- 346 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 L + + + VDHI Q Sbjct: 347 -----------LAEWQELGLNLSLLK-----------FPESDTRQNWVDHIKQVFKFFDI 384 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 K + + ++ ++ V + +R+ E L Sbjct: 385 RKNSSQWSREIVAFNELEAAWVELSKPNGDRLNRQEFCQDILEIISKLKVPMQ------- 437 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + L + ++ + L G EG+ P Sbjct: 438 --------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPP 471 Query: 657 NTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIP 709 +P L L+ L+TA + F + T + + P Sbjct: 472 AIENDPVLDFYESRRLSQLGITLETAIDIAQRNELCFYELLRIPTISLTFSCAEQHYKKP 531 Query: 710 TIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 I S + RL + ++++ + YL KL + Sbjct: 532 LIPSPYATRLGLEMTPPPLLNLASIEEARRYYLQQPEKLSNDVLVNDIIKNWQVEQRRES 591 Query: 767 PRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + +S S++ L P+ +A +L L + + + Sbjct: 592 GESPDEYDGVIGVGVDYENRIFSASQLLALGQCPFKWFATYLLGLKEPSEAEAEITGSLG 651 Query: 809 GTLFHNIITEL---------IKKRINKNTPEINHLMKQIIDSH----FEKENLPPHIDII 855 G L+H + L +++ ++ E + + + F+K + Sbjct: 652 GRLYHRCLELLLTDIKNQTDLRRLERQDINEALSQAEAALKAEENVNFDKFMGWEARRLE 711 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 ++ + E+ ++S+ E I G+ +T DRID +G + + Sbjct: 712 GLNMLELNLQA----EDFLRSNAEIISCENSFNAEW--YGLKVTARVDRIDRTPTG-LLV 764 Query: 916 TDYK-TGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 DYK TG P K ++ Q I+ Q+ L A+ F ++ V LK++ + Sbjct: 765 LDYKTTGSLPLGIKDDSGQAKINIQMPLYQQAIAQN-FKEVQQVDVK---LYSLKKQRYL 820 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 D + +++ + L + G + ++ ++D + R Sbjct: 821 PAKVTDPAI--LEAFADEVKQRLQQ-------GN--YPVAPDQKQQVCQYCQFDSVCRKG 869 >gi|300857960|ref|YP_003782943.1| hypothetical protein cpfrc_00542 [Corynebacterium pseudotuberculosis FRC41] gi|300685414|gb|ADK28336.1| hypothetical protein cpfrc_00542 [Corynebacterium pseudotuberculosis FRC41] gi|302205689|gb|ADL10031.1| Putative ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|302330241|gb|ADL20435.1| Putative ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] gi|308275924|gb|ADO25823.1| Putative ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 1062 Score = 178 bits (451), Expect = 5e-42, Method: Composition-based stats. Identities = 117/954 (12%), Positives = 258/954 (27%), Gaps = 78/954 (8%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STILPIIK 79 + L+ T+ E R +++ + +K LR+ + + +++ Sbjct: 81 VSTLIMDTVAERLRRG----EDPSNILVIAASKEGATRLRTGIAARLSGESYTAAATMVR 136 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 S+ + + L ++ ++ + L+ + Sbjct: 137 SVHSLAFALLRSLSGEDLRL---ITGAEQDAVIRELLQGHNE------DSEAAQIWPQET 187 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 + A+ L D + EDL L N + W A FL+ + + + Sbjct: 188 RDALGFVGFARGLRDFLLRAVERGLSPEDLERLGNTYHRPMWKAAGAFLRE----YEQTM 243 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 A S + H+ +I+ + P +A+L+ + + I+ Sbjct: 244 ALGGAKSLSAS-ELVSTVLEYHIPDQGWRTVIVDDAQHLDPKSAQLIGELLRYAEFGII- 301 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 G D + + + + + +L + E+ + + Sbjct: 302 -GGDPEQSVFHFRGASPEFLTKYPAEHQL---MLKTTRRLPETTARIVENQGQHFEYVAD 357 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 R+ +I +R+T ++ + V + D E +A + Sbjct: 358 KIRRAHLIDGVPWDDIAVIVRSTGLIAPIRRALLAAGVPVQVDPTDIILSEQRIVASMIL 417 Query: 380 MSLDENKK------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 + + + L+ L R +++S G L Sbjct: 418 AVRAIHGELNNRELEDLLLGPIGGADSVTLRRLYRGLRKVEMSRGGS-------RRAIEL 470 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN------KNSYDIMD 487 L + L+ E + + L + + Sbjct: 471 LKILISPRPSEEQNDLIGEAEEVLSERELQILERTRRVLLRGAQPGSVEEVLWAIWHETG 530 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCG 546 L + + + + A V+ I + + + G Sbjct: 531 LANHLQAVSLRGGAAGSQADRDLDAAMALFDAAGDWVERRPTAGIVSFMRHIAEQELPTG 590 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 V L + + S + E Sbjct: 591 VRDRRQIRTQAVQLLTAHAALGQQWHTVIVAGV------QEGSWPSLGETGTLFGQEELT 644 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 D+I I+ T+ + + ++ L + + + + F+ Sbjct: 645 DLIDSGIEPNTIVMRSKDRLDEERRLFHVAKSRATHRLYITAVEDPASNDVAEPSRFIEE 704 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 + S ++ E A D + + +R ++P + + + + Sbjct: 705 LDPSFFQQQSQENEASYA--DLSVPLAPKDTGLEDYIRLLSVPAMVAELRREVRNSDSPQ 762 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK----PFPPLEAQPRTYSFSEIKQLINDP 782 ++R Q R H + P Q R+ S S I+Q + P Sbjct: 763 -----RRRDQAARQLARLASAGVPGAHPEEWWGEGGPSTDQPLQQRSISPSLIEQGLTCP 817 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 +LD + ++ P + +G+L H + + ++ E+ ++ Sbjct: 818 LRA------RLDAVIEGEETPFQMLKGSLAHAYAEAIARGVESETAKEL------TTEAF 865 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 N P + + ++ E + E + V I GI + G Sbjct: 866 LRLLNAPAWQQETEKAAWIRMIERLEEWITVSAARYELVGVETSVNTKIA-EGITIRGRI 924 Query: 903 DRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 DRI+ + G I DYKTG + QL AL G S Sbjct: 925 DRIERTQDGAYRIIDYKTGTRGLSAKEVADH--KQLMAYQLALSKGKLSDTGDV 976 >gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1] gi|300072980|gb|ADJ62379.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1] Length = 924 Score = 178 bits (451), Expect = 5e-42, Method: Composition-based stats. Identities = 153/1036 (14%), Positives = 306/1036 (29%), Gaps = 133/1036 (12%) Query: 11 IAPSSPFFREMIPALLN--GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT 68 I PS F+++ + LL+ L + + L + V + VP Q ++ Sbjct: 8 IPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFKAALSREL 67 Query: 69 GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128 ++ I P I +L ++ + + S +RL++L + Sbjct: 68 -RRPYIAPRINTLSGLLAMQPPGEDAPP-------SESERLMQLYAQLREHGWLKKMFSA 119 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + + L+ L I E+ + A L Sbjct: 120 RRNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPSAHAML 179 Query: 189 -KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + A+ W ++L+A + + M A P+I T P A ++ Sbjct: 180 SEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASL----PLIWVSPTEPEPLDAAFLA 235 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 A H IV W+ Sbjct: 236 AYAQHQPVRIVTLD---------WSRAAMAPLY--------------------------P 260 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + G + E G + + + A + Sbjct: 261 LYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSALPLLCP------------ASDL 308 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A+ A + L + K + A++ DR ARR++ L R +++ G LSTT + Sbjct: 309 ENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGWKLSTTRAA 368 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L + + + + A+ L+K P P A ++ + +I Sbjct: 369 AALAAWNDLVSARGETNALLDLLKSPFVFPADP-------GRADRVMRIEARLRRANIAG 421 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + A ++ + ++T G Sbjct: 422 DWQALQTAFADARDPDD--------------------------LQCILTLARQAARFGGR 455 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW-I 606 ++S W + + + +D L + G+ + +I ++ Sbjct: 456 KTLSQWCETQRRLCEALGMD-----AALREDGAGQQCLLMLDEIAAEQGALQDQFSFAEW 510 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + L T K + +L +RL FD +++ G + P + F S Sbjct: 511 RALLNLRLDATSYMPPIKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSN 570 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 ++ +LNL T Q D ++ ++ P S W++RL + Sbjct: 571 AVRRELNLATRATRQRQQLRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQ 630 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L++ ++L P P P + P T S S + PY Sbjct: 631 QGAAPLQR--LELPPPVQQLRA----LPSSMPAPSAP-DLLPPTLSASGFGSFLACPYQF 683 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQIIDSHF 843 +A+R+L++ + + P++ D G+ H I+ + + + P L+ Q + F Sbjct: 684 FAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVF 743 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTG 900 ++E + + + K+ ++L + ++ + + + GI L G Sbjct: 744 QREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDGGIELYG 803 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 DR+D + G + DYKT ++ D QL+ + + Sbjct: 804 RLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQLAFYGLLA---------GGVIEH 854 Query: 960 LFYIR--LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017 Y+ L K L ++ + + E Sbjct: 855 AHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAALPANG-------IES 907 Query: 1018 SNIQSEYDHLARVAEW 1033 E L R W Sbjct: 908 VCQYCEMRGLCRKGAW 923 >gi|167038395|ref|YP_001665973.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038871|ref|YP_001661856.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp. X514] gi|300913541|ref|ZP_07130858.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561] gi|307723444|ref|YP_003903195.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513] gi|320116799|ref|YP_004186958.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|251764631|sp|B0KDB8|ADDB_THEP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764632|sp|B0K212|ADDB_THEPX RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|166853111|gb|ABY91520.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp. X514] gi|166857229|gb|ABY95637.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890226|gb|EFK85371.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561] gi|307580505|gb|ADN53904.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513] gi|319929890|gb|ADV80575.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1149 Score = 178 bits (451), Expect = 5e-42, Method: Composition-based stats. Identities = 122/940 (12%), Positives = 273/940 (29%), Gaps = 129/940 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K ++++I + E E L L + + E L + Sbjct: 117 GFIKKISEVITEFKRFEVTPEKLMDTAESIQKEGLREKLRELSLIYGKFDELLHQKYID- 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + E+ + I G TG P +++ + A V L Sbjct: 176 -EEDALTLLAEKLEYSEQFKGAEFWIDGFTGFTPKQYKVLEKL--LKKAARVSVTLTMDT 232 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + T + + L K+ +I E L + + ++ Sbjct: 233 SKDSIDNTDLFYTTKKTEDK---------LLKICYENNISYEKPVDLNEGVPKRFEKNEE 283 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 ++ + + K +++L +A N E A + + + Sbjct: 284 MAFLEKHLFSYPYKI----------YSKDTKNISLFKAVNVYSEVEETAREIIRLVRDEN 333 Query: 385 -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + D + + +K + +GI I + + +TSL K Sbjct: 334 LRYSDIVVTARDLKRYHKLIKTIFSHYGIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWS 393 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K + + +G K + LD++ ++ Sbjct: 394 YESVFRHLKTGFTNLNKEDISFLENYVLANGI--KGGKWKEEWKYSFRNRLDKLFDDQDE 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + E + + I + + + Sbjct: 452 KEALEKVNTIKNGISEPLNKFYKDFSNA-NTVREACEILYNFLVERDIPQRIENLIREFK 510 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 E + + + + +++E K N + I+ + + Sbjct: 511 ENKEFEIANQYS----QIWDIVVDVLDQMVEVMGEEKINIDLFSKILDIGFEAYQIGSIP 566 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675 + + + N L + G N+G++P ++ + L+ + +L+ Sbjct: 567 PALDEVLVTSVDRMKSHNAKALFVIGANDGIFPASSFEEGILTDEDRQILTSYEVELDRD 626 Query: 676 TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA-----SRW------LQRLLVLG 723 T K + + T L + + ++ ++ SR+ + + + Sbjct: 627 TKAKVFEEQFLVYTALTSTSKFLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVI 686 Query: 724 GTDFFDNLKKRGQC------------------------YLD----------WTRKLDYTT 749 D + R +LD W ++++ Sbjct: 687 EMDTDEENLHRVSSPDPTFNEMIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVL 746 Query: 750 K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + Q L +S S +++ P+A + + LK Sbjct: 747 EGFNYSNQVRVIPSAKIKRLYKDEINFSVSRLEKYAACPFAYFVQYGLKAKERK--IYSF 804 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-----------KENLPPHI 852 D D G HN++ E+ K ++ L ++ D + L Sbjct: 805 DPPDLGIFMHNVLNEVSKALEKEDKTW-EDLDREYCDEVVNIVVDNMLKGVSEHILKSSP 863 Query: 853 DIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLT 899 + ++ + ++ E +SS + + I I+L Sbjct: 864 RYEYLSKRLTRVLSNAVWVISEHIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLI 923 Query: 900 GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 G DR+D+ + G + I DYK+G K E ++ QL + A+ + + Sbjct: 924 GRIDRVDVFEKGEESYIRIIDYKSGNKELKLEDVFYGLELQLLIYLDAILESADKENTDI 983 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 K A +FY R+ D I K + +EL ++ LK L Sbjct: 984 KPAGIFYFRID-----DPIVKADKDITDEELQKEILKKLR 1018 >gi|256751133|ref|ZP_05492015.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus CCSD1] gi|256750039|gb|EEU63061.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus CCSD1] Length = 1149 Score = 178 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 122/940 (12%), Positives = 273/940 (29%), Gaps = 129/940 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 K ++++I + E E L L + + E L + Sbjct: 117 GFIKKISEVITEFKRFEVTPEKLMDTAESIQKEGLREKLRELSLIYGKFDELLHQKYID- 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + L+ + E+ + I G TG P +++ + A V L Sbjct: 176 -EEDALTLLAEKLEYSEQFKGAEFWIDGFTGFTPKQYKVLEKL--LKKAARVSVTLTMDT 232 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + T + + L K+ +I E L + + ++ Sbjct: 233 SKDSIDNTDLFYTTKKTEDK---------LLKICYENNISYEKPVDLNEGVPKRFEKNEE 283 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 ++ + + K +++L +A N E A + + + Sbjct: 284 MAFLEKHLFSYPYKI----------YSKDTKNISLFKAVNVYSEVEETAREIIRLVRDEN 333 Query: 385 -NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + D + + +K + +GI I + + +TSL K Sbjct: 334 LRYSDIVVTARDLKRYHKLIKTIFSHYGIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWS 393 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K + + +G K + LD++ ++ Sbjct: 394 YESVFRHLKTGFTNLDKEDISFLENYVLANGI--KGGKWKEEWKYSFRNRLDKLFDDQDE 451 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + E + + I + + + Sbjct: 452 KEALEKVNTIKNGISEPLNKFYKDFSNA-NTVREACEILYNFLVERDIPQRIENLIREFK 510 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 E + + + + +++E K N + I+ + + Sbjct: 511 ENKEFEIANQYS----QIWDIVVDVLDQMVEVMGEEKINIDLFSKILDIGFEAYQIGSIP 566 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675 + + + N L + G N+G++P ++ + L+ + +L+ Sbjct: 567 PALDEVLVTSVDRMKSHNAKALFVIGANDGIFPASSFEEGILTDEDRQILTSYEVELDRD 626 Query: 676 TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA-----SRW------LQRLLVLG 723 T K + + T L + + ++ ++ SR+ + + + Sbjct: 627 TKAKVFEEQFLVYTALTSTSKFLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVI 686 Query: 724 GTDFFDNLKKRGQC------------------------YLD----------WTRKLDYTT 749 D + R +LD W ++++ Sbjct: 687 EMDTDEENLHRVSSPDPTFNEMIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVL 746 Query: 750 K------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + Q L +S S +++ P+A + + LK Sbjct: 747 EGFNYSNQVRVIPSAKIKRLYKDEINFSVSRLEKYAACPFAYFVQYGLKAKERK--IYSF 804 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-----------KENLPPHI 852 D D G HN++ E+ K ++ L ++ D + L Sbjct: 805 DPPDLGIFMHNVLNEVSKALEKEDKTW-EDLDREYCDEVVNIVVDNMLKGVSEHILKSSP 863 Query: 853 DIIWRH-LFHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAI---ESIGIHLT 899 + ++ + ++ E +SS + + I I+L Sbjct: 864 RYEYLSKRLTRVLSNAVWVISEHIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLI 923 Query: 900 GFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 G DR+D+ + G + I DYK+G K E ++ QL + A+ + + Sbjct: 924 GRIDRVDVFEKGEESYIRIIDYKSGNKELKLEDVFYGLELQLLIYLDAILESADKENTDI 983 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 K A +FY R+ D I K + +EL ++ LK L Sbjct: 984 KPAGIFYFRID-----DPIVKADKDITDEELQKEILKKLR 1018 >gi|257459107|ref|ZP_05624226.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257443492|gb|EEV18616.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 970 Score = 178 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 132/1024 (12%), Positives = 265/1024 (25%), Gaps = 132/1024 (12%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 + + LR+ +G + P I +L + E+ L+ I R L + + Sbjct: 14 SSRALRAALQNESGG--VLAPRI-TLAEFYEKALFVPDLV------ACGEIDRALFMKQA 64 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + + L P + + L + TE + AL Sbjct: 65 VSESKR----------AGERLKFPNELYEFMRNREYLFGFFKELATERVS---IDALDLS 111 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 W+ + L+ + + L E + AL +L + I I G Sbjct: 112 DTYAWYAEHFEILRKLAGAYARILREHGFYDEITL-PALYELNESYLRGFERIEINIDG- 169 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 + A +VL + + + E Y + Sbjct: 170 -NPSAFEFEVFKRAAEL--SEVVLSFRATTLNSKPVRAVEELCGISLELGFAYRVNLSTG 226 Query: 296 LAKLLDFL---------DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 + L + ++ I+ + D L Sbjct: 227 EISSRELLSVGGAVVCRGFELRSLQASYVFEKISSFVRAGIAPESIAVILPDESFAGTLR 286 Query: 347 NKIPNIQKCFSDVALIEADNEREE--------AISIAIALRMSLDENK--KKSALITAD- 395 I + ++ + I+ L+ + A + D Sbjct: 287 LYDERIARARGSHRMLNFAMGEKLKDNLFYVTLEKISQCLKEARTPKFGVDYRAFKSPDG 346 Query: 396 ---RNLARRVKLELTRFGINIDISAGIPLSTTLHS----------SILTSLLNAIFKLND 442 V+ L D SA + + + L + F+ + Sbjct: 347 GFLDAEDSAVQQNLALGNFASDNSASQNFAQQNSAFDCEIFSNSKTDLNFMSAREFENTE 406 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY-----------DIMDLKSL 491 I + A + + E + ++ L+ Sbjct: 407 NFEILREISAERANSAEEQSFSLDLAEFQEPLECAQQRDYSVSAKRQEPSRKQQGSLRYS 466 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + + D Q P + Sbjct: 467 MQLEHIELEEEDGYSKSPKQRDRFRRSKIREGADEYPQRSNPQELDLFFASVGVDEALFG 526 Query: 552 DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 ++ + + + L +E+ K L ++ + Sbjct: 527 EFACDFAKQVSFEHFEALITKLACLPKISDALL--QEKLKEPLYLIKILLRKFKDENLSL 584 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ID+ L++ +K + + ++G LESR L FD +I+ N+ + PK ++ Sbjct: 585 GNLIDLF--LLEISRIKLDDVRGGKVTVMGLLESRGLQFDGVIIPDFNDDLVPKRSSGEM 642 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLV 721 FL+ +++ L + ++ + + SR+L+ Sbjct: 643 FLNSALRARAGLISHADRENLQRFYYDGLLRGAKKSAICYLQSVEK---LPSRFLKSF-- 697 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + + + + YL K + P + SFS + + Sbjct: 698 ----EVQQDAEFSQEDYLRLFG--REEFKPALCGQEDPVARHDFFAEELSFSRLDTFLEC 751 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 Y R + L K D G + H L ++ + I Sbjct: 752 KRKYYYRYVFGLK--EGLKFGEDNALLGKILHTSFQRLYER---AGMKFSMEKFRSIYSQ 806 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + + + K++ HE+ + K ++ G+ L+G Sbjct: 807 LAREAGIARFDVELELKAVEKLARLLEGHEQ----IWSFSGSEVSLKGELD--GVRLSGR 860 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 DRID K+G I DYK G K+ +K QL+ A L Sbjct: 861 IDRIDEDKAGRKFIIDYKRGSA--KKHMEK---FQLTFYRALLAQEC----------ECA 905 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y+ LK E + L I + E F + +S Sbjct: 906 YLSLKDCAFAAPGDKTPS-------LENLRETLSSIGKEFAS-EVAFT--RTEAVQSCEY 955 Query: 1022 SEYD 1025 +Y Sbjct: 956 CDYK 959 >gi|70726985|ref|YP_253899.1| hypothetical protein SH1984 [Staphylococcus haemolyticus JCSC1435] gi|123659796|sp|Q4L4Y2|ADDB_STAHJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|68447709|dbj|BAE05293.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 1162 Score = 178 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 112/956 (11%), Positives = 261/956 (27%), Gaps = 138/956 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 ++ L++ I + E LH L++ + + + +Y+ ER+ Sbjct: 117 YGFSEKLSEQIQDFKKYSVTPEHLHTFLQDNDLKTRTRHKLEDISLIYQYFEERINGE-F 175 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 + + ++ + + I G +++ + VL D Sbjct: 176 ITSEDSLNHFIDILSQS-EWIKRAEVYIDGFHNFSTLEYQIIKALVQSAKKVTVLLTTD- 233 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 E ++ + TH L ++ L+I + Sbjct: 234 ---------GNEDPFSLFRKPSEVLTH----LKEIAKDLNI---------------ELQQ 265 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + + + ++ + N + ++E+ + REE +A + + Sbjct: 266 QFFKQQYRFNNKDLIQLEQQFDALQINPIAYDGSINILESSSIREEVNEVARQIIKDTRD 325 Query: 385 ---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + A++ D A L ++ I +I ++ ++ SLL I Sbjct: 326 KQYRYQDIAILYRDEAYAYLFDSVLPQYDIPFNIDTKRSMTHHPIMEMVRSLLEVIQTNW 385 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + + L+K + F + + LE + +D K +D Sbjct: 386 NISPMMRLIKTNILTNHFKDSAYL--IDLLENFVVERGVYGKRWLDEKLFSIDNFTKMGR 443 Query: 502 NTHVPHWQSRLSEEDKELA-VLLVDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 H + R E ++D I + + + + + D K Sbjct: 444 KEHKLTTEEREDFEQVVHLKNDIIDKILTFEKAMNEAENVRGFATAFYETMEAFDLPKYL 503 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 +T + +D R ++ L + ++ + ++++ ++ Sbjct: 504 MTHRDQLDVDG-RHEEAEEIDQIWNGLIQILDDLVTVFDNEEMTLKRFLEVFDIGLEQLE 562 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674 + + I +++ N + + G+N+G P+ + + ++ + Sbjct: 563 FVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGAMPQPVSSSSLITDEEKKVFEQQAQ 622 Query: 675 ----KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGTDF 727 T++ A M G+ + ++ SL S ++ ++ L Sbjct: 623 VELSPTSDILQMDEAFVCYIAMTRGSEQVTFSYSLMGAQGEDKEKSPFIDQIQGLFNGLE 682 Query: 728 FDNLKKRGQCYL-------------------DWTRKLDYTTKQPHYKRPKPFPPL----- 763 N+ + W + Sbjct: 683 VMNIHYQHNAQPLSLMEHPHQTKVVLFESLKAWLEAEMVADVWVDAYQVMRDNDKLNNGL 742 Query: 764 ------------------------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 S S + + P+ YA L+L+ Sbjct: 743 EYLLTALTYDNETVKLDEPLAASLYGSTINASVSRFEGYNDCPFKHYANHGLRLNER--T 800 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-----DI 854 K + D G +FH + + K N + + E + Sbjct: 801 KYKLENFDLGNIFHTALKYISDKVDGDFKNLDNKKIHALTVEALENVLPQVQFNLMDSNA 860 Query: 855 IWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MAIESIG 895 +R I S L+ + + + + + I Sbjct: 861 YYRYVSKRIGVIVESTLKALRYQNKNTKFKPQRFEAGFRKTPNNSEELIAQPLITKQGIP 920 Query: 896 IHLTGFADRIDLL--KSGFVD-ITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGS- 948 +++ G DRID I DYK+ + K + Q+ + Sbjct: 921 VNIRGQIDRIDAYTKDDKSYINIIDYKSSNPSAKLDLKKVYYGKQMQMMTYMDIALQNAQ 980 Query: 949 -FSQIDCRKVANLFYIRLKQKFK--IDCITNDKKKYSADELSEKSLKN--LIEIVT 999 + K L Y + + D + + D+L + LK L +V Sbjct: 981 RLGLSNEIKPGGLLYFHVHDERLSFKDWGELEDDALTQDKLEQAFLKEYKLRGLVN 1036 >gi|325953681|ref|YP_004237341.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922] gi|323436299|gb|ADX66763.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922] Length = 896 Score = 178 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 134/1032 (12%), Positives = 283/1032 (27%), Gaps = 185/1032 (17%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F +++ LL + L T+ +P KR + + F + T + +LP Sbjct: 4 FIDKVVDELL------------KDTEKLLQTTLVLPGKRPMLFFKKAFQQKTSQ--VVLP 49 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + S+ + V E L +S + L L Sbjct: 50 KMISIEEFVSEMANVQL---------ISGLSLWFFAYNSYEKVFPDLETFDDFLKW---- 96 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWW--LLAADF---LK 189 P + + L +L D D E + L+ + +F +K Sbjct: 97 -APTTLKDFDDLDASLVDT-DHFFEYMVSIERIKNWGLEIGEADKHTLIQRHLEFNERVK 154 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + + L+ + + + + + AG A ++ + Sbjct: 155 LFYNQFRKDLLTEKKAYYGLANRLAAEQINQAINSPIE--YVFAGFNALTKAEEAILFGL 212 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + A + D + PQ L K + Sbjct: 213 -ENEQKAKIFWDADEYYLQ-----------------------PQQESGAFLRRHKKKTKK 248 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 N + + Sbjct: 249 QWSWTF-----------------------------------NDFASPKQIQVTGISKNVA 273 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A + LR +E K +ALI AD L + + +I+IS GIPL + Sbjct: 274 QAKYVNELLRHKTEEELKNTALILADEMLLPALLNAMPNNVKHINISMGIPLKNIPLAHF 333 Query: 430 LTSLLNAIFKL--------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 S+L F I ++++P K + + L + NK Sbjct: 334 FKSILELHMNREKLGNSTAFYFKNILDILENPSLKI-----FHCKNDEQLIAIIHSQNKV 388 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + L+ ++ L+ I + I L Sbjct: 389 FSSVKFLQDFLI-------------DSIFSPLFSRPNNLNDLLSIIEKFIADLFVNPKID 435 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 N ++ + + F L + + Sbjct: 436 NDLMREYLF-----YFQQIFTSLRTEIATLKASTSFRTLYLLYQKLLQSETLSFIGEPLD 490 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++ + ++ + + + LG + + +D GLN Sbjct: 491 GLQVMGLLETRLINFDHLIMTSVNDGILPLGRQNNTFIPYDIRKEKGLNTFTENDAIYAY 550 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLL 720 F A + + + + + SR+L+++ Sbjct: 551 HF---------------------YRLLSRA---KTVHFLYNTDSDAMGSGEKSRFLEQIA 586 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 + N K + + + P + A+ S + + I Sbjct: 587 YESSHEVVINYAKPHFEIIPKNKLV-----IPKTPKTMEKLIDWAENIGISPTLLSTYIR 641 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE---------I 831 +P Y R IL D ++ G + H + L + +N E + Sbjct: 642 NPIEFYERVILSNDETEEAEETISAKTLGKIVHGTLETLYQDYLNIALHEKDFEEIKNKV 701 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKIFVNIP--A 887 + +++ + +++ L +++ +++ KI L+ ++ ++ + +F+ Sbjct: 702 DEVLEANLKKEYKEGELDRGENLLIKNVARKIVEGVLQRDKKIAQENELVILFLEKKYNF 761 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLID-------PQ 936 M I + + GF DRID + +G I DYKTG + +++ + Q Sbjct: 762 LMDIGDRKVKVKGFIDRIDSV-NGTKRIIDYKTGKIDNLNLASDKIEEVFEMDNKAKYLQ 820 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L A Q + +++ L ++ ++ E SL Sbjct: 821 LITYAHLYYNEIQQQEEEIQLSIYPIKFLNKEPIYLHYNKSTMITY--KIVEDSLTYFQN 878 Query: 997 IVTLLQNGEQPF 1008 ++ + N E PF Sbjct: 879 LIREILNPEIPF 890 >gi|269796046|ref|YP_003315501.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269098231|gb|ACZ22667.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542] Length = 1124 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 116/1031 (11%), Positives = 262/1031 (25%), Gaps = 116/1031 (11%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104 SV + T+R LR G + ++++ TA + P V+ Sbjct: 72 SVLVLGATRRGAGHLRDTLAARLGL-TVRGAVVRTAPSAAFTVLTARAQAAGEPAPTLVT 130 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++ L L L+ + P ++P + L D++ Sbjct: 131 GPEQDLVLGELLAGHAAGEGVDV-----GWPATVPAETLELRGFREELRDLLMRAAERGL 185 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---SSPVGYQIALMRAEAEH 221 EDL L W+ A + R + +A P G R Sbjct: 186 GPEDLVTLGRRHSRPEWVAAGRLYEEYLAVMALRGLTPDAGERYDPAGIVDEAARTLETW 245 Query: 222 LM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + +++ + ATARL +A +GA ++ D + T Sbjct: 246 EADDRPRWDLVVVDDYQEATAATARLCHVLAG--DGARLVLLADPDTSAQAFRGATPALV 303 Query: 280 NITSSNTTYSTHPQ-------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS-F 331 S+ + ++ L + L L +V + + Sbjct: 304 GRASAGSPPTSRSLDLDAGSTGELGAQVHTLGTVWRHGAVLRDVVRSVTQEIGSVGAVEH 363 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KK 388 + V + E +A LR + Sbjct: 364 RRAPARSLDAAAAAAEASDGTDSTDGTVETAVLPSPALEEAHVAKTLRAEHLVRGTAWSQ 423 Query: 389 SALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSS-ILTSLLNAIFKLNDFMAI 446 A++ + R++ L G+ + + +PL +L +L + Sbjct: 424 MAVVARSGSELVRLRRALGGAGVPVAVVGTDVPLRDEPAVRPLLRALRASATGDLAPEVA 483 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ PL R E +A G + + + Sbjct: 484 VELLTSPLGGIDAVGLRRLRRALRGEELAGGGGR----------TSDALLVEALGDPARV 533 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 +++ + + + +D + + N Sbjct: 534 VTLPSDVVRAPRRVARVLEAGRTALEAPGA--NAQTVLWALWAAADVAETWRSIAVNGGP 591 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 R +L + F + + + + + ++ + +T+ S Sbjct: 592 GAARADRDLDAVMAVFRAAETFVERVPQATAVAF----ADHVESQDLPADTLAKGAAASD 647 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----------NLK 675 T+ +L + ++ +++ G+ +G WP ++ L D+ Sbjct: 648 TVQLLTPAGAAGGEWEVVVVAGVQDGTWPDLRLRDSMLGSQALVDVLSGRSQDATSTGRD 707 Query: 676 TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + F +A + ++R+ + L G ++ Sbjct: 708 ARRAVLADELRAFAVAVSRASRRLVVTAVRDVDSEPSVFVDLVSPDDDGSDTEPPDVFAA 767 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI--------------- 779 L A + S + Sbjct: 768 PLDLRGVVSTLRTELAAALSMDGAAGSAGSAGSAGSAGSAGSEGAARTAAPASTARAASV 827 Query: 780 --------------NDPYAVYARRILKLDFIPHFKKDP---------------------- 803 DP + Y L + Sbjct: 828 AGLLARLAGAGVGEADPTSWYGSAELSTPAALRAPDETVPVSPSKVEQVHRCALRWALES 887 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI-IWRHLFHK 862 G+ + L+ + + + +D + + +P R Sbjct: 888 AGGTAGSALSQSVGNLVHDIARELPAAGHAELAAELDRRWHELGMPDGWPATQTRRRADA 947 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + ++ +I + V ++ + L G DR++ V +TD KTG Sbjct: 948 MVRRLADYYTEISGE---VLVEESFEVQVGRA--VLRGSVDRLERSGEDGVRVTDLKTGR 1002 Query: 923 -NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKK 980 P A + QL A+++G+F ++ + + + + + Sbjct: 1003 GIPSVAEAAT--NAQLGAYQLAVESGAFPELGPGVRSVGAQLVFVGDGARGATRRTQEAL 1060 Query: 981 YSADELSEKSL 991 + ++ ++L Sbjct: 1061 ETGEDSWARTL 1071 >gi|228477218|ref|ZP_04061856.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126] gi|228251237|gb|EEK10408.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126] Length = 1130 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 134/965 (13%), Positives = 275/965 (28%), Gaps = 137/965 (14%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + L + L D+ ++ DL L + + L Sbjct: 119 SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDL 171 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247 + L+ + + + HL K + +I G T L++ Sbjct: 172 LRIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFTAEEEALVA 231 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + ++ A + ++ L L + Sbjct: 232 LLNDKCHQIVIGTYASQKAYRANFVYGNVYQASVDF------------LRTLAQTYKVTP 279 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + V N + R + +S T D + TD + + + E N+ Sbjct: 280 DYVTT-DKEGNPSFARISRLLESRHDFSTVDEQLTDQDK----------QALQVWEVVNQ 328 Query: 368 REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +EE +A ++R L + K+ L+ + + +V +F I +S+ Sbjct: 329 KEEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSH 388 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + LVK L E N D Sbjct: 389 PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDL----------FEYYVNFAD 438 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 I + D A ++ D + L +++ + L+ + K S+ Sbjct: 439 IKGRHKFLSDFTANSRDKY------------DLDQLNTLRSQLVEPLDKLLNSRKQKGSS 486 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + V + + E+ K + L ++ + + Sbjct: 487 LLKKLVVFLEAVQVPSQMASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDD 546 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ I+ + + + + + + + G+ + +PK L Sbjct: 547 FLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLL 606 Query: 665 SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713 S +S +N T E Q H M+ + L+ ++ N S Sbjct: 607 SDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMS 666 Query: 714 RWLQRLLVLGGTDFFDNL---------------------------------------KKR 734 +L+ LL LG Sbjct: 667 VYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSV 726 Query: 735 GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 YL +D T + +P S S + N+ Y Sbjct: 727 AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLY 786 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843 + R +L L+ + PD GT H + ++ ++N + + F Sbjct: 787 FLRYVLGLEELESIH--PDARHHGTYLHRVFERVMGDSSSENFDDKLEKAIAQTNQEQPF 844 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 E + R + I+ S + ++ + + I +TG D Sbjct: 845 ELLYTEDQESRLSRQILEDIARSTASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIID 902 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960 R+D L G + + DYK+G N QK + PQL AL+ ++D ++ Sbjct: 903 RVDRLTDGALGVVDYKSGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGA 958 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ ++ + ++ D+L+ ++ K L L E ++ + + Sbjct: 959 MYLHMQDP------QLNLAQFGLDKLAAQAHKELT-YKGLFVASETEHLAGGNYDLQKTV 1011 Query: 1021 QSEYD 1025 YD Sbjct: 1012 --TYD 1014 >gi|319793173|ref|YP_004154813.1| exonuclease-like protein [Variovorax paradoxus EPS] gi|315595636|gb|ADU36702.1| exonuclease-like protein [Variovorax paradoxus EPS] Length = 851 Score = 177 bits (449), Expect = 8e-42, Method: Composition-based stats. Identities = 98/707 (13%), Positives = 193/707 (27%), Gaps = 75/707 (10%) Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398 + L + + A A + +EA A + L E + ALI DR L Sbjct: 210 LWGDHALHLSLVPANTSVAPAASHVAADPEDEAELAAACVLRHLAEGRAPVALIATDRAL 269 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 RR+ +L GI G LSTT ++ L S L A + +K Sbjct: 270 TRRISAQLKAQGIVTHDETGWKLSTTRAAATLMSALRACAHDAASDQVLEWLKSG----- 324 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 D +L + + + + W + S + Sbjct: 325 ---------------------------ADGDALAVQALEVRLRREGLRDWSAWCSLVARS 357 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 V + + + S + +++W + L+ + Sbjct: 358 EKPNDVALLPYT----EAIEARRASMMKSRPVAEWLRALRELLEGSGQWTPLADDMAGGK 413 Query: 579 E-EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET-VKPKIEKSSTLFILGTLES 636 L + + + E+ + +++ + V P +++ + +L + Sbjct: 414 VIAALWLDADSHGDADEFPGGRHTLAEFTAWVRDVLEDASFVPPTGDQAPRVIVLPLYQL 473 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 F +++ G ++ P + S + +L L + E + A Sbjct: 474 LGRAFGAVVIPGCDDRRLPASPEPPGNWSAAQRLELGLPSRETLEAAQRSAWAAALHNPW 533 Query: 697 LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + P S +Q L + + + + T + Sbjct: 534 CELVWRQSDASGEPVRPSPLVQALQLDHVLQPTVDPRPARDVTVQPTAVPTPSGALLPL- 592 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S S + L PY +A R L L + D+ D G H + Sbjct: 593 ------------QNISTSVYEDLRRCPYRFFALRQLGLRSADELDVEVDKRDFGNWLHAV 640 Query: 816 ITELIKKR---INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 + + ++ E +++ + L + + + + +L Sbjct: 641 LGHFHEALIETPTQDAHERVAFIEEAAQRATREYGLSDAEFLPFAAAWPAVRDGYLVWLA 700 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--Q 930 + +FV G+ L G DR+D G + DYKT + Sbjct: 701 GHEVGGA-VFVESEPWKEQPLGGLRLVGRLDRVDRTSDGQAFVIDYKTESASVTKERVKD 759 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA-DELSEK 989 D QL+ AA + Y+ + +K A D L Sbjct: 760 PTEDTQLAFYAALVAD---------DTLRAAYVNVGEKSSGTQTVEQPAVVEARDALVAG 810 Query: 990 SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 + + I + L R W Sbjct: 811 IMSDFTRIAEGAALPPLGEGA-------VCDYCAARGLCRKDFWEVS 850 >gi|297571781|ref|YP_003697555.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932128|gb|ADH92936.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 1044 Score = 177 bits (449), Expect = 8e-42, Method: Composition-based stats. Identities = 109/1018 (10%), Positives = 266/1018 (26%), Gaps = 141/1018 (13%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADL-LLSYNLNP 101 + + + P +RA ELR+ + G + T ++S+ +A + Sbjct: 57 SRIAVLSPDRRAATELRNTLVTDMGVLGEGT---RVQSIAAFAFGIVSAYAQAVGRREPE 113 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 +S + + +I + + ++ A+ D+I Sbjct: 114 LLSGPDQDALIKDIIDV-------STRYYPSGMLGTINPDVASLEAFRSEYRDLITRAAE 166 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW----------TERLVELNASSPVGYQ 211 L + W++ A+ ++ +R + Sbjct: 167 LGITSSQLAQYGEQADNPSWVIGAELMEKYEDALAVQAAVGHQNPDRTDHSRIVTQAAAF 226 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 I AE + T + + A L+ + + NG V+ D + Sbjct: 227 IQQWGGHAELSLCPTWDWVFVDDLANCTLALRSLLRVLQD--NGTCVVVCGDPDAGVQSY 284 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 + + T + + S R+ Sbjct: 285 RGGIHQLQALIEQPRTAGGLGARRYVLAHRYRGGGQLAPYISKVTSGIHVSRAA------ 338 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---K 388 + + FS + A EE +A +R +E+ Sbjct: 339 ----------QQRSADYTYAPECAFSGHTFVSAH---EEIAYLAQRMRHIHNESGVAYAD 385 Query: 389 SALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLND----F 443 A+ T R+ ++ L GI + + PL S L ++ + + Sbjct: 386 MAVFTRSRSGHENLRHALMDHGIPVQPLPSVTPLRFQGAVSDLLLMIKTACGMGEEAEIA 445 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 AI TL+ P + + + G + L+ NN Sbjct: 446 EAIRTLLVGPFFGYTAAHIAALNRQMHGWEIFYGGKRQG------DRLLAAMFEEGPNNP 499 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + E V + + + D + Sbjct: 500 AADIPEFNKIRSVAERIRRAVQ-------------SEQRAERVLWEAWDGLGKAEEWREE 546 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 V + + L + ++ + + + + +++ Sbjct: 547 VLAGGVQADIADANLDAVIQLFRVAQRLADRDPANALIGDLIRVLEEQDVPEDSIARTSA 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-------LNLK- 675 + + ++ ++ + + +N+G+WP +NP Sbjct: 607 GAEGISVVSPTAGIGRSWGYVFISQVNDGIWPNLRLRNPLTRVPELVSIVVGSELAGAPV 666 Query: 676 -----TAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWL--QRLLVLGGTDF 727 AE + + T ++NIP+ WL L Sbjct: 667 QGIQQVAEVLDDELRMLLFCMTRATDGVEITCVESDDNIPSRFVPWLFSDDSGALLTHHS 726 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------- 768 + ++ R+ + + A+ Sbjct: 727 HAAVTLDSATFIGQLRQAQRQGHDRIAASARDYLQKMAEHDIAGMGQKLWVDDLEYTKRE 786 Query: 769 -------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 S S ++ ++ P + GTL H I E Sbjct: 787 SEDVETIRISPSAVENMLTCPLRGVLD-----SANGQSLGNASLAHVGTLVHQIAEE--- 838 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++ + + F+ + R + + ++ + ++ ++ Sbjct: 839 --TEEPDLDMMRARLDELWAVFDFGTDLADQQLYERAV--GMVTKLHQYLTENPATEQR- 893 Query: 882 FVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 + A++ + G+ ++G DR+ D+ S V + D+KTG + ++ PQL Sbjct: 894 --ELYARVERD--GLVVSGKIDRLEFSDMDPS-AVRVVDFKTGKSSPRKE-DADRVPQLL 947 Query: 939 LEAAALKAGSF----SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + ++ G + + + + + ++ E ++++ + Sbjct: 948 IYQWLVEQGGVIMPEGGQTPTRSLGARLVHIGK--ETQGYGLTEQSELDAERTKEAEQ 1003 >gi|314933178|ref|ZP_07840543.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87] gi|313653328|gb|EFS17085.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87] Length = 1155 Score = 177 bits (448), Expect = 9e-42, Method: Composition-based stats. Identities = 119/960 (12%), Positives = 275/960 (28%), Gaps = 139/960 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191 ++ L L S + ++ LA+ I + + L+ E + + + Sbjct: 104 DTELKLYRSQSKYYGFSEKLAEQIQDFKKYSVTPDHLNQFIKEHQLQTRTQHKLEDITLI 163 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K R+ ++ + + + + I I G R++ + Sbjct: 164 YKELESRMSGEFITTENSLERFIDQMSKSEW--LRRAEIFIDGFYNFSTLEYRMIEALVQ 221 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H VL D ++ + TH + +L L+ + Sbjct: 222 HAKSVTVLLTTDGDQDP----------FSLFRKPSEVLTHLEDIANQLNIQLNKTLFHQR 271 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + M+ S + P S + V ++E+ N REE Sbjct: 272 FRFKNDDLMHLESDFDALQMTPLSHS-------------------NHVEILESSNIREEV 312 Query: 372 ISIAIALRMSLDEN---KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + + +N + A++ D + A + + I +I +S Sbjct: 313 NELARRIIRDVRDNQLRFQDIAILYRDESYAYLFDSIFSLYDIPFNIDTKKSMSHHPIME 372 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++ SL+ I + ++ L K + F + LE AL +D Sbjct: 373 MIRSLIEVIQSNWNINSMLRLFKTDVLTAQFKHSSYL--IDLLENFALERGVYDKRWLDE 430 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQ---CITPLVTYKTNKNST 544 + +D+ +H Q + + EE L ++D +L ++ T + + Sbjct: 431 EVFHVDQFNKMGRKSHALTPQEKETYEEVIRLKNNVIDKVLYFEKAMSEAHTVRDFATAF 490 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + +T + + ++ L + ++ + + Sbjct: 491 YESMEYFELPNQLMTERDEL-DVAGKHQQAEEIDQIWNGLIQILDDLVTVFDTQEMTLKQ 549 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++++ ++ + + I +++ N + + G+N+G P+ + + + Sbjct: 550 FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYMVGMNDGSLPQPVSSSSLI 609 Query: 665 SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLREN-NIPTIASR 714 + + T++ A M + ++ SL N S Sbjct: 610 TDEEKKYFEQNAQIELSPTSDILQMDEAFVCYIAMTRACEKVTFSYSLMGNSGEEKEISP 669 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYL----------------DWTRKLDYTTKQPHYKRPK 758 +L ++ L N++++ + R LD+ + Sbjct: 670 FLSQIKDLYHNLDIVNIQRQHEEQPIGLMQHVHQTKIELFDTLRRWLDHEDVDIRWLDAY 729 Query: 759 PFPPLEAQPRT--------------------------------YSFSEIKQLINDPYAVY 786 + + S S + P+ Y Sbjct: 730 QVIRDDERLNEGLDYLITSLTYDNETVQLNETLTKQLYGKTINASVSRFEGYQQCPFKHY 789 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 A L+L+ K + D G +FH+++ + + ++ + + E Sbjct: 790 ASHGLRLNERS--KYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIRALTEEALELI 847 Query: 847 NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888 +++ I + L + S + Sbjct: 848 LPKVQFNLLNSTAYYKYLSRRIGSIVETTLNALKYQTGFSKFVPQRFETGFRKSPKNRDE 907 Query: 889 ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYK--TGDNP-KKETAQKLIDPQ 936 + I I++ G DRID I DYK TG + Q Sbjct: 908 LVAKPLHTRQGIPINIRGQIDRIDTYTKDDHSYVNIIDYKSSTGSATLDLTKVYYGLQMQ 967 Query: 937 LSLEAAALKAG----SFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991 + + + I K L Y + + + K D + ++ EL + Sbjct: 968 MMTYMDIVLQNKDRLGLTDI--VKPGGLLYFHVHEPRIKFDNWSKIDEEKLNKELIKSFK 1025 >gi|150024265|ref|YP_001295091.1| hypothetical protein FP0155 [Flavobacterium psychrophilum JIP02/86] gi|149770806|emb|CAL42271.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 922 Score = 177 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 149/402 (37%), Gaps = 35/402 (8%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 I ++ID V + E S L I+G LESR+L+F+T+I+ LNEG +P N F+ Sbjct: 492 IYKQVIDLAEVSFEGEPLSGLQIMGVLESRVLDFETVIITSLNEGKFPAGKTVNSFIPYD 551 Query: 668 MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ +L L T EK H + + +++ + + SR++ +L V Sbjct: 552 VKRELGLPTYKEKDAIYTYHFYHLLQRAKNIYLLYNTESDGLDGGEKSRFITQLEVEKQP 611 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + T P K A + +S S + I +P Sbjct: 612 KHNLTHEIIQPVVPNIAS---KTIVIPKAKSAMIRLKEIATGKGFSPSALTTYIRNPIQF 668 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR---------INKNTPEINHLMK 836 Y +RIL + +++ GT+ H + L K +NK N + Sbjct: 669 YFQRILSIRESEEVEENIALNTLGTIIHQTLEALYKPIINKFLTTDDLNKMLAVANDEVL 728 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIES 893 + +++ + +++ + + +FL E+K + + + + P + +E Sbjct: 729 KQFKEIYKEGEVKKGKNLLAFEVAKRNVFNFLIEEKKQIENGDVVKILALETPLERILED 788 Query: 894 I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-----------TAQKLIDPQLS 938 I + G DRI++ + + I DYKTG K + QL Sbjct: 789 NSLPFPIKIAGNVDRIEIR-NNKIRIIDYKTGKVEKNSVQLKDWNGLTLDIKNDKIIQLL 847 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 A + + + + + +K F I K+ Sbjct: 848 CYAFMYEKQA--NGLEIEAGIISFKNMKGGFLPFGIKQGKEI 887 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 60/456 (13%), Positives = 123/456 (26%), Gaps = 99/456 (21%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP 76 F ++ LL+ +L+ TI +P KRA L F + T P Sbjct: 6 FLENLVSKLLSEKKT-----------ILSETTIILPNKRAKIFLLEAFKKKLPH-FTFAP 53 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 I S+ D ++E + S L L E + L K + + Sbjct: 54 EITSIEDFIQEIANIRSIDSIEL---------LFEFYTVYLSVTAKEKQQTFEQFSNWGK 104 Query: 137 SLPISPA--NAIWLAK----NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 +L + L + I++I+ + ED L + Y +W L + Sbjct: 105 TLLQDFNEIDRYLLDPKHVFSYLQDIEVIKRWGIEIEDKTTL-IDNYLEFW----KLLPL 159 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + L + E + I+ AG A +++ + Sbjct: 160 YYDTFYTHLKNKEIGYQGLIYREAVTNLEEFITAFKNKKIVFAGFNALNQAEEKIVQQLI 219 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + A + +D + L ++R Sbjct: 220 -AKDIASIYWDIDAVFLNDYSHDAG---------------------------LFVRRFKS 251 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 +N S S+ ++ +I + Sbjct: 252 SWSHYKTNPFEWVSTNFSE--------------------------DKNIQIIGTAKAIGQ 285 Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 A ++ + + +N K AL+ D N+ + L +++I+ G Sbjct: 286 AKIVSGIINKQISDNPNASLDKVALVLGDENMLIPMLHSLPASVGSLNITMGYSSKNNPI 345 Query: 427 SSILTSLLNAIFKL---------NDFMAIATLVKHP 453 ++ L + + ++ +P Sbjct: 346 QLLIAKLFKMHNNALNRSESSYVFYYKDVLDVLSNP 381 >gi|300779590|ref|ZP_07089446.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC 33030] gi|300533700|gb|EFK54759.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC 33030] Length = 1100 Score = 177 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 129/1081 (11%), Positives = 263/1081 (24%), Gaps = 181/1081 (16%) Query: 46 SVTIYVPTKRAIQEL-------------RSEFIEITGKKSTILPIIKSLGDVV--EEKFT 90 V T++A EL + + + ++ + V + F Sbjct: 65 EVLGLTFTRKAAHELGRRIRTRLEKLAANEQLVRHLDPSGGLAETLEVIAPTVSTYDAFA 124 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 DL+ Y L PV RL+ A L I + + + L + +S Sbjct: 125 GDLIREYGLLVPVEPDARLITDAELHSIAWDVVSNHGGALLDGVDANPGVSTVV-----D 179 Query: 151 NLADIIDIIETEEKKWEDLHALKNE-------------------KYGMW--WLLAADFLK 189 L ++ + + + + W Sbjct: 180 TLLRLVANMGNDLMPPSRVREEAEAFIDNVAALPRGRAKEQYAKEVRGWIDKQRLRAAYT 239 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATAR 244 ++ + L E + + + H +G +++ + A Sbjct: 240 DLAEELSRELRERGVVTFNEQMSVAAQLASNHPSVGESQRGRFRVVMLDEYQDTSHAQRV 299 Query: 245 LMSTV--------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ ++ A HP+ V D W T + + + Sbjct: 300 LLRSLFGENRDDLARHPHPLTVTAVGDPMQAIYGWRGATAANLQAFVDDFPLADGASAPK 359 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 A+L + ++ S +E PN Sbjct: 360 AQLTTSWR---------------NPPEVLALANSVSSAVLGAPGPQRAVEPLNPNPASDP 404 Query: 357 SDVALIEADNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLELTRFGI 411 +V + EE ++A L + SA++ + + L GI Sbjct: 405 GNVEVGFYGPVDEEIAAVADMLAADFHEQLAEHGDVSSAVLVRKNKQSALIAEALEERGI 464 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 +I L T + ++ + D A ++ P G + + Sbjct: 465 PYEIVGLAGLLTVPEVADAVAVAKMLVHPQDSAAALRILAGPACGLGLKDITALSRRAVN 524 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE------DKELAVLLVD 525 +++ + L R Q T + E + L + Sbjct: 525 LAGGRAHDQDDSAVAGLGPDADPRERLQAQLTDLIREAENAVGENERSVGLADAVADLGE 584 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 L + + S +L V + R + G Sbjct: 585 PERYTEEGLARLQVLSSQLRALRMRSLGKRLPDLFDDIVSIFGIRTEVLSRPSDTGTVHL 644 Query: 586 SLFSKIIETGSCIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 F++ + + + ++++ T DG + IL +++ L + T+ Sbjct: 645 DKFAETVASYPGADLEGFLNYLELATEHEDGLAPGTVANTGDRVQILTAHKAKGLEWRTV 704 Query: 645 ILGGLNEGVWPKNTAK-------------NPFLSRVMQSDLNLK--------TAEKYIGQ 683 + + + +SD TAE Sbjct: 705 AVAHADAATYGGTAETFLGYVATVPDDSYTALAEADTRSDFQKLTNQYKKDKTAELAEES 764 Query: 684 AAHDFEMANGTRHLIYTRSLR---ENNIPTIASRWLQRLLVLGG---------TDFFDNL 731 A + + + P + TD ++ Sbjct: 765 ARLFYVAVTRAERRLLVTASGISPTRKKPVEPYSHFLPFRDMAEVLSWWDGTVTDELTDI 824 Query: 732 KKR---GQCYLDWTRKLDYTTKQPHYKRPKP---------------------------FP 761 ++R Y +D + + P Sbjct: 825 REREGFWPHYSAEPAAVDAAERVNAALKDLPQLTAGELYGLWERDVTALIEEHEATMSPS 884 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 P + S+I L +P ARR + RGT FH I Sbjct: 885 VPVIMPAMLTASDIVALRANPEQF-ARRARRPVPFKPNSY----AKRGTAFHEWIEGFFG 939 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 R + E+ N P +D E + Sbjct: 940 ARPLLDDDEL-------------PGNTEPDVDATTLARLK------ASFEASHWAQRAPA 980 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLL------KSGFVDITDYKTGDNPKKETAQKLIDP 935 + P ++ + S + G D + G I D+KTG P+ + Sbjct: 981 HIEHPFEIDLGSASV--RGRIDAVYRDAPTPEAPHGSWTIVDWKTGAKPQATEMRAAK-L 1037 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL++ A K + + N + ++ ++ + L + + L Sbjct: 1038 QLAVYREAWKRIAGDGL----PVNAVFFYVRTGEDFAPHDLPERGELEELLQTAAARGLE 1093 Query: 996 E 996 Sbjct: 1094 S 1094 >gi|320529154|ref|ZP_08030246.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis F0399] gi|320138784|gb|EFW30674.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis F0399] Length = 1181 Score = 177 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 113/994 (11%), Positives = 256/994 (25%), Gaps = 146/994 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E+ + L G L P +S+I + L +++ Sbjct: 52 ALAEVLTSGAGFL-QAYVFG-FRRFARQVLLETGGAHLPRISDIGMRILLKDILIKRAGD 109 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + ++ + L I ++ + L A + Sbjct: 110 LSAFARSVHKR-------------GFTETLGSTIAELKRYRIHPDILRAAADRSSTGRLP 156 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L I + R+ + ++ + + I + G P Sbjct: 157 QKLADLSIVMEELAARME--GRYTDQTDRMERLAWQLGTASFLRDAEIWVDGFDFFNPQE 214 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + + V ++ T+ + + T T + + Sbjct: 215 LAVFRALFHAAGALHVTLTME--------GRCTDGAVRVNLPENTRETGLFSRGYRAMRD 266 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L+ ++ + S + ++ L + + L + L+ Sbjct: 267 LEQILAEIDPQASASIRLMEEQRRTAQLSLAAIETRLFGHGQLSP------CGDGALRLV 320 Query: 363 EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAG 418 EA N R E + A + E ++ A+ D + +GI + A Sbjct: 321 EAANPRLEMEAAAADILRLTREQGYRYREIAVFVRDMPCYAELLTLTFADYGIPCYLDAK 380 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----------KFGFPEKYLSRAK 468 P + + +L + ++ D+ + ++ + P A Sbjct: 381 RPSTHHPLAELLRAAARTAWRGWDYETMFRALRTGFFPVLGASEEETQVLAPSGDWQEAV 440 Query: 469 NALE-LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + LE G + + R A + +R++EE+ AV Sbjct: 441 DRLENYCLAYGIRTQRQWTATEDWDFARRAIAADAYESEDNAARIAEEEAIDAVRRRIAA 500 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWT-----KLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + ++ + + + E R + Sbjct: 501 PLALLKERLSRAQGTARTRTQALYELLMELDVPRVLETWRTAADAEGRLADAAAHRQIWT 560 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + +LF +++ETG + +A ++ +I+ +D + + I ++ L Sbjct: 561 SCMNLFDQMVETGGDEEISAHDYEEILGDGLDALDIALIPPGLDHVTIASFDQNSLAGIR 620 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---------------TAEKYIGQAAHD 687 + + G N G P+ A+ LS + +N E+ + Sbjct: 621 AVYIVGANAGTMPRAGAQQGVLSDAERLSMNEMFHALHEGVAPEIFGGGREQSFLERYRL 680 Query: 688 FEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + R L + + + S + RL L F + Sbjct: 681 YRGFTAAREYLWVSYALAGSDGSALSPSPLIARLRRL-EPSFLSIPLATVEREDALVLAA 739 Query: 746 DYT--------------------------------------------------TKQPHYK 755 + Sbjct: 740 PRPALSALSSALLGQKERGDMRPLWWDVYNWMRDDEEMRPSLRLMVGGLFAHLRETEIPP 799 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S + ++ P++ +A+ L L + D GTL H I Sbjct: 800 AVAVRLFAPHRRIAGSTTRLEAFRACPFSHFAKYGLALRERE--VYEFQNNDFGTLLHGI 857 Query: 816 IT---ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--------RHLFHKIS 864 + E ++ + ++ ID + ++ + + Sbjct: 858 LRGYGEWVRATHRNDWSAAAQEGEEKIDELLAQIVPQVRSAVLLSRASYRHRVERIRRTA 917 Query: 865 HSFLEHE--EKIQSSIEKIFVNIPA---------KMAIESI-GIHLTGFADRIDLLKSGF 912 + S + + + + L G DR D+ + G Sbjct: 918 RQVIRRLTAWAAASEFRPQGFEVGFGGHDGVRIAEFPLAGRMTLSLRGQIDRYDVSEDGA 977 Query: 913 VDIT-DYKTGDNP-KKETAQKLIDPQLSLEAAAL 944 I DYKTG + + + QL L + Sbjct: 978 YYIVLDYKTGTVSLELPEIRHGLKMQLLLYLYVV 1011 >gi|313632208|gb|EFR99277.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL N1-067] Length = 1056 Score = 177 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 119/963 (12%), Positives = 279/963 (28%), Gaps = 136/963 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L + + LA++ ++ EE DL + + + + + Sbjct: 4 LKVFSRATSRKGFYSELANLFKEMKQEEVSITDLEE-SAKMLPTSVNNKVHDISLIYQKY 62 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L + L+ + + III G ++ + + Sbjct: 63 EELLA--GKFLENEDYLKLLADKIAESDYLNQTEIIIDGFNSFSKQELTVIEKLMQKCDK 120 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + L+ I + E S S+ YSL + +I E++K L Sbjct: 121 LTISLTLNV---PEIERGLEEFSMFRASTEAY------YSLLETAKLNNIPVEEIKLLLE 171 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 ++ + + Q +++ + +A+N+R E IA Sbjct: 172 NKRAKTPPLEFLANVWGQNKF-------------ASFQGETTNLNIHQANNKRAEIEGIA 218 Query: 376 IALRMSLDENKK--KSALITADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTS 432 +R + A++T + + L + I I I ++ + S Sbjct: 219 REIRGLTSNGYRYKDIAILTRNLGDYDVLCETLMEDYNIPIFIDKKRAMAKHPFIEFIRS 278 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSL 491 L+AI + I VK + + R + LE L + + K Sbjct: 279 SLDAIQFNWKYEPIFQAVKTEFFFDSAADVADMRRKSDILENYVLENGIQNKWKWEKKGD 338 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + R + ++E+ + ++ + + + PL T +TN + ++ Sbjct: 339 WIYR-----KIRGLSINVLPQTDEELNIQNMINEMKNRIVIPLSTLETNLAKAKTGIELA 393 Query: 552 DWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + + E+ ++++L + +E Sbjct: 394 LALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAWTSITALLDEFVEVLGEESLEL 453 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI-------LGGLNEGVWP 655 +++II +D + + ++LL+ + + L + Sbjct: 454 SSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDMKVIFAIGMNDGVMPLRQKDKG 513 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEK--YIGQAAHDFEMANGTRHLIYTRSLRENNIPT--- 710 + ++ R S L A+ + L + + + Sbjct: 514 ILSDQDRESLREQNSSLKASAKNNIGEEDLLAYKIVSLP-SDKLFLSYPVADEEGKVLSE 572 Query: 711 -----------------------------IASRWLQRLLVLGGTD-FFDNLKKRGQC--- 737 SR+++ G + KRG Sbjct: 573 SNYLRKIKGQFKNLNEEIYLTDPSLLSDEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSN 632 Query: 738 --YLDWTRKLDYTTK---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 + + D + + + L + S S +++ + Sbjct: 633 VWWDAYNSYFDDKKESKNAKQVLSSLYYENKTEALQEATAKGLFGEDIHASVSRMEKFFS 692 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------E 830 + +A+ LKL+ HF+ D G +FH + + ++ N E Sbjct: 693 CEFQHFAQYGLKLEERAHFQ--LQAVDMGEIFHAAMEWISEELKRNNLDWGNLTVEECKE 750 Query: 831 INHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA 887 + L + + + E L ++ +I + +E+ S+ + + + Sbjct: 751 LAKLAMKFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDF 810 Query: 888 KMAIESIGIH----------LTGFADRIDLL-KSGF--VDITDYKTGDNP-KKETAQKLI 933 + + + L G DRID+ + + I DYK+ + + Sbjct: 811 GLKGDIPPLKIPLQSNRELLLQGRIDRIDVAEEDNRTFLRIIDYKSSSHDLALTEVYYGL 870 Query: 934 DPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 Q+ + + I + A + Y + +F +++ + + +K Sbjct: 871 ALQMLTYLDIVVTNARKMIGKSAEPAGVLYFHMHNQFVQAEKELTEEEIAKEIQKASKMK 930 Query: 993 NLI 995 LI Sbjct: 931 GLI 933 >gi|28379195|ref|NP_786087.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum WCFS1] gi|81630834|sp|Q88U40|ADDB_LACPL RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|28272033|emb|CAD64938.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum WCFS1] Length = 1201 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 110/1003 (10%), Positives = 278/1003 (27%), Gaps = 165/1003 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + L R++ ++L ++ LA I+ ++ Sbjct: 92 PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T + ED+ L L I K + + P + L Sbjct: 139 TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + GT + +AG +++T+ GA V L + N Sbjct: 198 QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 T + + + + + + ++ + + + + + + + Sbjct: 251 GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391 + ++V L D+ + E + +R + D + + + Sbjct: 307 YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355 Query: 392 ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 +T + + + I + ++ ++ +L + + + + ++ Sbjct: 356 MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415 Query: 451 KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 K L + +A + E L+ + + + ++ T+ + Sbjct: 416 KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563 + +S + + + + + + K + ++ S + ++ Sbjct: 475 TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 LD E+ +T + + + +++ ++ +G + Sbjct: 535 QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----KTAEK 679 + I + + + + + G + V P N LS V + +L L + Sbjct: 595 TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQLTLSSLDGDH 654 Query: 680 YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725 Y+ +A + RHL ++ L+++ + R +QR L Sbjct: 655 YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714 Query: 726 -----------------------------------------DFFDNLKKRGQCYLDWTRK 744 + + ++ ++ Sbjct: 715 TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774 Query: 745 LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L + R P L S S++++ + YA + + Sbjct: 775 LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841 LKL F+ G FH ++ LIK + P ++ + Sbjct: 835 YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892 Query: 842 HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887 ++ + + +F + S+ E I Sbjct: 893 ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEILFGNVGKEHG 952 Query: 888 ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938 I++ +H+ G DR+D + I DYK+ + + A + Q+ Sbjct: 953 LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012 Query: 939 LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977 A+ + K+A Y+ ++ Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055 >gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 1064 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 123/1031 (11%), Positives = 261/1031 (25%), Gaps = 109/1031 (10%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLV R + + + + PT+ LR + ++T + +SL + Sbjct: 64 TLVARVRRLVESGVDPDDILVLTPTRPGATALRDPLA-LAVGRATSGALARSLASFAFQL 122 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + N P + +++ + + P L S Sbjct: 123 VRGAEVRRGNEPPQLLTGGDED---QIVKDLLDGDAADESEGISRWPEWLGPSIRATRGF 179 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK-YWTERLVELNASSP 207 +L + +DL AL ++ W A F + R +A+ Sbjct: 180 RGDLRAFLAECTNLGLSPDDLSALASQHGVEVWESLASFTREYRHIRRRMRGAHRDAADL 239 Query: 208 VGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 +R I++ + L+ G V+ D Sbjct: 240 AREAVGILDDALRDRDVLGRFAALRCILVDDAQELTSGGVDLLRACRTLGIG--VVAFGD 297 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + T ++ + L L ++ + R Sbjct: 298 PDVGSGAFRGATPENFARLARELGD-----------LAALRRVHRGTPEQADLVRSVAAR 346 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + P V + EEA +IA LR Sbjct: 347 VGAAGVVAHR--------------RAPEGAASTGSVRTFLLRSPAEEADAIARLLRERHV 392 Query: 384 ENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439 + A+I D ++ EL + S G+ L L +L+ Sbjct: 393 LDGIAWGQCAVIAHDSRQVAALEAELAAREVPARSSGPGVALGAQRPVRDLVALVELGAT 452 Query: 440 L---NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 ++ + L R + L +R Sbjct: 453 DPSEWTPESVTDALLGTFGG--LDPIELRRLRTVLRHEEMREGGT-----------RSAG 499 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + P + + + A L + + + T S ++ Sbjct: 500 EVLASGLRHPLEFATIDSREARRAARLGETLAALRAQAEQHATAHELLWTAWERSGLSRS 559 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + + +L + F++ G A ++ I E Sbjct: 560 WREASRGHGPLAEQANRDLDAIVALFQAAKRFTEREPDG-----EAAVFLRAILDSDVAE 614 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672 + + +L + FDT+I+ G+ +GVWP + L +D Sbjct: 615 DRIEQPAVVDAVRVLTPAAAAGTAFDTVIVAGVQDGVWPNTRLRGGLLETWRLADAVQFP 674 Query: 673 -----NLKTAEKYI--GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 + + + + + ++ +++ S + L Sbjct: 675 DLPAAGMLDRRRAAMHDELRLFVRAISRAGERLIVTAVDDDDTG--PSVLFEMLPTPEAA 732 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP----------------KPFPPLEAQPRT 769 + + R+ + P R Sbjct: 733 SAIPEHPLSLRGLVARHRRTLTVPRVPAPDRRHAAGQLALLATAGVAGAAPEQWYGVAAP 792 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIP--------HFKKDPDRTDRGTLFHNIITELIK 821 S + ++ L + V R+ L+ + GT+ H + Sbjct: 793 SSTAPLRDLAKEDVRVSPSRLHALEECELNWVIADLGGDRSGTTAGIGTIIHAALETAAS 852 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + + +++ +E F + I Sbjct: 853 ASEDDLWAVVEERWGELVFDAAWRERAERTRARDLVRRLATYLRRF------DDAGGRLI 906 Query: 882 FVNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 ++ I G ++G DR++L SG V I D KTG N + A+ +PQ Sbjct: 907 GAERHFEVPIPVDDAGEHGAVVSGDIDRVELTPSGRVVIVDLKTGKNEPQTDAKVADNPQ 966 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L+ A +G+ + + L+ + E + ++ + Sbjct: 967 LAAYQLAFASGAIENTEGLAPGGAKLLVLRPTAATKDYAEPLQPPFDGEARDAFVERVQR 1026 Query: 997 IVTLLQNGEQP 1007 V +++ G Sbjct: 1027 AVGVMRGGSFA 1037 >gi|292670882|ref|ZP_06604308.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC 43541] gi|292647503|gb|EFF65475.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC 43541] Length = 1182 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 115/993 (11%), Positives = 255/993 (25%), Gaps = 144/993 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + + L G L +S+I R + L ++L + Sbjct: 52 ALAQTLTHSAGFL-QAYVFG-FRRLARQVLLETGGAHLSRISDIGRRILLKDILLKHEKE 109 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY--GMW 180 L + + + L I ++ + L ++ Sbjct: 110 LSVFARSVGKR-------------GFTETLGHTIAELKRYRLSTDVLRTAADDDAHTQGR 156 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 L + + R+ + ++ + A+ + I + G P Sbjct: 157 LSKKLRELALIMDDLSARME--GRLTDQTDRMERLAAQLKDAPFLRGAEIWVDGFDFFNP 214 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + + + + +D + + S SL KLL Sbjct: 215 QEMAVFVELFHTADTVHISLTMD-GQREGGRVRVNLPENTRDTGLFARSYQTMQSLTKLL 273 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 +D + + S L + + + Sbjct: 274 VEMD-------------PAAVPEIHLTEEQQRAQKPSLAAIEGHLFGHVRLAPIADNALK 320 Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDIS 416 L+EA N R EA ++A + E ++ A++ D + + GI + Sbjct: 321 LVEAANPRLEAEAVASDILRLAREEGYRYREIAVLVRDMDTYADLLLPAFADCGIPCHLD 380 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--------KYLSRAK 468 A P + + +L + ++ + + ++ A Sbjct: 381 AKRPSTHHPLAELLRAAAQTAWRGWGYDTVFRALRTGFFPVVTEPTDDGGFSCGDWQEAV 440 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + LE L +S + T + + + ++ + I Sbjct: 441 DRLENYCLAFGIHSENQWTATEDWDFVRRTIPEDARETEQ-NAMRIAEEIALDDIRRRIA 499 Query: 529 QCITPLVTYKTNKNSTCGNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 ++ L + + + + E R + Sbjct: 500 APLSLLTQNLRREGCLAQERAHALYKFLTKLEAPQKLEMWSAEADAEGRLADAAAHRQIW 559 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + +L +++E +A ++ +++ +D + + I ++ L Sbjct: 560 ASCMTLLEQLVEVSGDENLSARDFEELLQDGLDALEIALIPPGLDHVTIAAFDQNSLAGI 619 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-----------AEKYIGQAAHDFEM 690 + G N G P+ + LS + + E+ + + Sbjct: 620 RAAYIIGANAGTMPRAGVQQGVLSDADRLSIRESLAHTNHTIFGGGHEQSFLERYQLYRG 679 Query: 691 ANGTRH-LIYTRSLRE-NNIPTIASRWLQRLL---------------------------- 720 R L + +L + S + RL Sbjct: 680 FTEAREYLWVSYALSSADGAALAPSPLITRLRVICPTVLSIPLAMVERTDDLVLSAPHPV 739 Query: 721 VLGGTDFFDNLKKRGQCYLDW--------------------TRKLDYTTKQPHYKRPKPF 760 + K+RG W R L + ++ Sbjct: 740 LSLLAGALLGQKERGIMLPLWSDVYNWMRSNAVMHPLLRLMVRGLVSSPREEEQLSLATA 799 Query: 761 PPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 L A+ S + ++ P+ +A L L + D GTL H I+ Sbjct: 800 KQLFARDGRISGSTTRLETFRQCPFRHFAMYGLGLKERD--VYEFQSNDFGTLLHEILHG 857 Query: 819 LIKKRINK-------NTPEINHLMKQIIDSHFEKENLPPHI-DIIWRHLFHKI---SHSF 867 + K P+ + +++ + I +RH +I + Sbjct: 858 YGEWVRTKHANDWCAAEPDSAAKIDELMHEVIPRIRSSVLISRASYRHRIERIRRTAQQV 917 Query: 868 LEHE--EKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLL-KSGFV 913 + H SS + I ++ + L G DR D+ + Sbjct: 918 IRHLTSWAKASSFHPLGFEISFGRDMDDVRLEEFQLAGGATLSLRGQIDRFDVTKARDYY 977 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 + DYKTG + + QL L ++ Sbjct: 978 LVLDYKTGGTSLLLPEIRHGLKMQLLLYLFVIR 1010 >gi|199598403|ref|ZP_03211822.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus HN001] gi|258508492|ref|YP_003171243.1| ATP-dependent nuclease subunit B [Lactobacillus rhamnosus GG] gi|199590722|gb|EDY98809.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus HN001] gi|257148419|emb|CAR87392.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus GG] gi|259649802|dbj|BAI41964.1| ATP-dependent exonuclease subunit B [Lactobacillus rhamnosus GG] Length = 1179 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 113/995 (11%), Positives = 248/995 (24%), Gaps = 134/995 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191 ++ L++ A LAD + + EDL A L I Sbjct: 111 QADLTIYAGEAQHTGFVTQLADQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E+ + ++ ++ +A T I + + + L+ T+ Sbjct: 171 LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + LD PT + + + + L + + + + Sbjct: 227 TAAEVTIGLVLDRPYPTTP---------PVAPNLFLPAGRLYHRLYQKAKTMRVPIRLDQ 277 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + +S S + +E + V L A + +E Sbjct: 278 F---------AQPRHLSLGMRRV-ASWWQANTNIEPQPTPPANVADQVRLATATDPYQEL 327 Query: 372 ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ ++ + L A + F I P+ Sbjct: 328 RHVAQSIYQAVRNGARYRDFVILARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ SL + I L+ L A + L+ +R Sbjct: 388 LIESLFAIQDHDYQYQDIMRLLHTELLLPQEMTVADYRDAVDTLDNHLVRTGIAGKKRWT 447 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY---KTNKNST 544 + ++ + + + L+ + + S Sbjct: 448 QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 L+ + + E+ T ++L + K N + Sbjct: 508 YHWLTKTGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +++ T + I T RL + + G P + L Sbjct: 567 FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHIFVIGATSTAMPDVPNDDGVL 626 Query: 665 SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683 + + L + + Q Sbjct: 627 NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738 A+ F+ HL+ T+ S R + + D + + Sbjct: 687 ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746 Query: 739 LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783 L T +R P+ L + S S ++ + + Sbjct: 747 QSVLSALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-------NTPEINHLMK 836 + + L L P F+ D G+LFH ++ + ++ + I + Sbjct: 807 EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTHLRDQQQNLADVDPAAIMTAVP 864 Query: 837 QIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887 ++ ++ E L + + ++ L +++ +S + + Sbjct: 865 PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924 Query: 888 ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933 + G +++ G DR+D+ + I DYK+G A I Sbjct: 925 GDTKGLPGLSWPLPHGGRVNVRGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987 Q+ A+ + A Y L+ + L Sbjct: 985 ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + L V + E S + S Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076 >gi|254557327|ref|YP_003063744.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1] gi|254046254|gb|ACT63047.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1] Length = 1201 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 108/1003 (10%), Positives = 278/1003 (27%), Gaps = 165/1003 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + L R++ ++L ++ LA I+ ++ Sbjct: 92 PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T + ED+ L L I K + + P + L Sbjct: 139 TANLQPEDVVQLAANAQVGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRH 197 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + GT + +AG +++T+ GA V L + N Sbjct: 198 QDLHGTHVYVELAGFAQLPAQEQGIITTM--LEQGADVTISLMLD-----HKVVDRAPEN 250 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 T + + + + + + ++ + + + + + + + Sbjct: 251 GTLFYQSGRLYYRLYQYARIRRIPVSQD----IYADTPRVAPGLVALDDFWRGQPQAATG 306 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391 + + ++V L D+ + E + +R + D + + + Sbjct: 307 HEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHANPADDYHYRDFLI 355 Query: 392 ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 +T + + + I + ++ ++ +L + + + + ++ Sbjct: 356 MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415 Query: 451 KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 K L + +A + E L+ + + + ++ T+ + Sbjct: 416 KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563 + +S + + + + + + K + ++ S + ++ Sbjct: 475 TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 LD E+ +T + + + +++ ++ +G + Sbjct: 535 QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679 + I + + + + + G + V P N LS +Q L+ + Sbjct: 595 TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654 Query: 680 YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725 Y+ +A + RHL ++ L+++ + R +QR L Sbjct: 655 YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714 Query: 726 -----------------------------------------DFFDNLKKRGQCYLDWTRK 744 + + ++ ++ Sbjct: 715 TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774 Query: 745 LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L + R P L S S++++ + YA + + Sbjct: 775 LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841 LKL F+ G FH ++ LIK + P ++ + Sbjct: 835 YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892 Query: 842 HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887 ++ + + +F + S+ E + Sbjct: 893 ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952 Query: 888 ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938 I++ +H+ G DR+D + I DYK+ + + A + Q+ Sbjct: 953 LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012 Query: 939 LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977 A+ + K+A Y+ ++ Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055 >gi|306833180|ref|ZP_07466310.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338] gi|304424754|gb|EFM27890.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338] Length = 1080 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 117/962 (12%), Positives = 261/962 (27%), Gaps = 131/962 (13%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + ++ L + K L D+ ++T +L L + L Sbjct: 95 SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLAEL-------HSAEKQEDL 147 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP-IIIAGSTGSIPATARLMS 247 + L+ + + EA HL + ++I G T L+S Sbjct: 148 VKIFLAVNDILLANQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVS 207 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + I+ + + + Q SL L L K Sbjct: 208 LLEEKCAQVII----GTYSSQKAYRAA-----------FSTGNIYQASL-DFLRGLAAKF 251 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + S ++F D + + A+ + N+ Sbjct: 252 H-------AQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQ 304 Query: 368 REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 +EE +A A+R L + + ++ D + R ++ I +S Sbjct: 305 KEEVEHVAKAIRHKLYQGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDH 364 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + L+K L GN D Sbjct: 365 PLVHFIDSLERVKRYRFRTEDVVNLLKTGL----------------------YGNFKQED 402 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ ++ ++ + + I+ + L + + S+ Sbjct: 403 LDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSS 462 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + + + + E+ +T + + ++ K + + Sbjct: 463 LLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDD 522 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +I + + + + + G+ + +PK + + Sbjct: 523 CLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQAHFPKIAQNSSLI 582 Query: 665 SRVMQSDLNLKTAE--KYIGQAAH-----DFEMAN----GTRHLIYTRSLRENNIPTIAS 713 S ++ +N T + ++ + F + T L+ + N S Sbjct: 583 SDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDTES 642 Query: 714 RWLQRLLVLGGTDFFD----------------NLKKRGQC-------------------Y 738 +L L G L R + Sbjct: 643 SYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFW 702 Query: 739 LDWTRKLDYTTKQPHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDPY 783 R L + P +P S S + N+ Y Sbjct: 703 SVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQY 762 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDS 841 + + +L L + PD + GT H + ++K N + Q ++ Sbjct: 763 KYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDDSNHSFDSKLDKAIQTTNLED 820 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 F+ + I+ S + I+ ++ I + + G Sbjct: 821 DFKFVYEEDEESRYSLTVLEDIARSTATILRDD-AQIQVESEEETFELMIA-NSVRIRGI 878 Query: 902 ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DR+D L G + I DYK+ N + + PQL AL+ + + Sbjct: 879 IDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLS-ESEHIFGA 937 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ +++ +K + E + + L E+ ++++ R ++ Sbjct: 938 MYLHMQEPKVDLSSVATTEKILENLAKELTYRGL------FLEDEKAYLANGRYHLNDSL 991 Query: 1021 QS 1022 S Sbjct: 992 YS 993 >gi|258539703|ref|YP_003174202.1| ATP-dependent nuclease subunit B [Lactobacillus rhamnosus Lc 705] gi|257151379|emb|CAR90351.1| ATP-dependent nuclease, subunit B [Lactobacillus rhamnosus Lc 705] Length = 1179 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 112/995 (11%), Positives = 242/995 (24%), Gaps = 134/995 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191 ++ L++ A LA + + EDL A L I Sbjct: 111 QADLTIYAGEAQHTGFVTQLAGQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E+ + ++ ++ +A T I + + + L+ T+ Sbjct: 171 LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + LD PTA + + + + L + + I + Sbjct: 227 TAAEVTIGLVLDRPYPTAP---------PVAPNLFLPAGRLYHRLYQKAKTMRIPIRLDR 277 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + +S S + +E + V L A + +E Sbjct: 278 F---------AQPRHLSLGMRQV-ASWWQANTNIEPQPAPTANVADHVHLATATDPYQEL 327 Query: 372 ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ ++ + + A + F I P+ Sbjct: 328 RHVAQSIYQAVRNGARYRDFVIIARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ SL + I L+ L G A + L+ +R Sbjct: 388 LIESLFAIQDHDYQYQDIMRLLHTELLLPQGMAVADFRDAVDTLDNHLVRTGIAGKRRWT 447 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + ++ + + + L+ + + KT + Sbjct: 448 QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507 Query: 548 LSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + E+ T ++L + K N + Sbjct: 508 YHWLTKIGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +++ T + I T RL + + G P + L Sbjct: 567 FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHVFVIGATSTAMPDVPNDDGVL 626 Query: 665 SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683 + + L + + Q Sbjct: 627 NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738 A+ F+ HL+ T+ S R + + D + + Sbjct: 687 ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746 Query: 739 LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783 L T +R P+ L + S S ++ + + Sbjct: 747 QSVLSALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIID 840 + + L L P F+ D G+LFH ++ + + ++ + + Sbjct: 807 EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTQLRDQQQNLADVEPAAIMAAVP 864 Query: 841 SHFEKENLPPH--------IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887 + P ++ L +++ +S + + Sbjct: 865 PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924 Query: 888 ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933 + G +++ G DR+D+ + I DYK+G A I Sbjct: 925 GDTKGLPGLSWPLPHGGRVNVHGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987 Q+ A+ + A Y L+ + L Sbjct: 985 ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + L V + E S + S Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076 >gi|229552294|ref|ZP_04441019.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus rhamnosus LMS2-1] gi|229314366|gb|EEN80339.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus rhamnosus LMS2-1] Length = 1179 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 112/995 (11%), Positives = 242/995 (24%), Gaps = 134/995 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIA 191 ++ L++ A LA + + EDL A L I Sbjct: 111 QADLTIYAGEAQHTGFVTQLAGQLSELMIGRITAEDLANTVAALTPGDRHRAKLRDLGII 170 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E+ + ++ ++ +A T I + + + L+ T+ Sbjct: 171 LDQYEA---EIGPYATTASLLSGLQ-QAMRTHDLTHTFIYLNHFNVFSASESALVETMLE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + LD PTA + + + + L + + I + Sbjct: 227 TAAEVTIGLVLDRPYPTAP---------PVAPNLFLPAGRLYHRLYQKAKTMRIPIRLDR 277 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + +S S + +E + V L A + +E Sbjct: 278 F---------AQPRHLSLGMRQV-ASWWQANTNIEPQPAPTANVADHVHLATATDPYQEL 327 Query: 372 ISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ ++ + + A + F I P+ Sbjct: 328 RHVAQSIYQAVRNGARYRDFVIIARRLDPYATIIPAIFAEFQIPQFTDLQRPMKDHPLVV 387 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ SL + I L+ L G A + L+ +R Sbjct: 388 LIESLFAIQDHDYQYQDIMRLLHTELLLPQGMAVADFRDAVDTLDNHLVRTGIAGKRRWT 447 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + ++ + + + L+ + + KT + Sbjct: 448 QTEPWRYFQRNPAADETEMDPEADKTAQINAIKTLVAQTVPALLKQWQAAKTGLEAARSL 507 Query: 548 LSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + E+ T ++L + K N + Sbjct: 508 YHWLTKIGVVDQLNAWREAASAAGELARSRA-HEQAWTTFTALLDDYVTILGNAKFNREQ 566 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +++ T + I T RL + + G P + L Sbjct: 567 FHELLAAGFASATYTQIPATLDAVVISETGLVRLAKAKHVFVIGATSTAMPDVPNDDGVL 626 Query: 665 SRVMQSDLNLKTAEKY-----------------------------------------IGQ 683 + + L + + Q Sbjct: 627 NSEERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASETLTLSYPMQNPQENSENQ 686 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIAS-----RWLQRLLVLGGTDFFDNLKKRGQCY 738 A+ F+ HL+ T+ S R + + D + + Sbjct: 687 ASPYFQQLKRALHLVPETWAPVTLATTVKSVLGSPRAMLSDFIRAAGDAQQQKQPLSLAW 746 Query: 739 LDWTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783 L T +R P+ L + S S ++ + + Sbjct: 747 QSVLNALKQTDLANLAQRLAGSLTYQNDPGRLDPQLAVQLYGRDMNVSVSRLETYYLNHF 806 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIID 840 + + L L P F+ D G+LFH ++ + + ++ + + Sbjct: 807 EYFLKYGLLLQPRPEFE--LSPADTGSLFHAVLDRYLTQLRDQQQNLADVEPAAIMAAVP 864 Query: 841 SHFEKENLPPH--------IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA--- 887 + P ++ L +++ +S + + Sbjct: 865 PMVAEIAKQPGYEILGSTYRMTYLTKRLSRLLIQVLLNMRQQQQRSGFRPVRTELQFGRI 924 Query: 888 ---------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYKTGDNP-KKETAQKLI 933 + G +++ G DR+D+ + I DYK+G A I Sbjct: 925 GDTKGLPGLSWPLPHGGRVNVHGKIDRLDIYREPDARRFIIVDYKSGQRRFDDSDAYYGI 984 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE------LS 987 Q+ A+ + A Y L+ + L Sbjct: 985 ALQMLTYIEAMTNVTAE--PPFVPAGALYFHLQDPKLKYTPELEPALERLKAFKYLGFLV 1042 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + L V + E S + S Sbjct: 1043 AEHGDEL-AAVDRTISPESGGRSEIAPLGFKKDGS 1076 >gi|295132149|ref|YP_003582825.1| hypothetical protein ZPR_0269 [Zunongwangia profunda SM-A87] gi|294980164|gb|ADF50629.1| conserved hypothetical protein [Zunongwangia profunda SM-A87] Length = 913 Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 72/445 (16%), Positives = 146/445 (32%), Gaps = 43/445 (9%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + ++ +++ + L ++G LESR L+F+ +I+ +NEG P + Sbjct: 472 SLTALRNFYNEIMSTQSLDFQGRPFKGLQLMGMLESRALDFENVIITSVNEGTLPSGKSN 531 Query: 661 NPFLSRVMQSDLNLKT-AEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIASRWLQR 718 N F+ ++ NL T EK H + + + + SR+L + Sbjct: 532 NSFIPYDLKKSYNLPTYREKDAVYTYHFYRLLQRATKVTLLYNTESGGLNSGEKSRFLTQ 591 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + + + +L K + +S S + Sbjct: 592 LEIEKQPNHLLKINTVSPKVPKVNNEL----KVIGKTPAMIEKLKDLANYGFSPSALTSY 647 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----PEINH 833 I +P Y + +L + ++ GT+ H+ + K + + Sbjct: 648 IRNPLDFYYQYVLGVKEEEEVEETVAYNTLGTVIHDSLEVFYKPLEGELLKEIHILDFRK 707 Query: 834 LMKQIIDSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI---- 885 + Q + + F K + + + + + +FL+ E E I + Sbjct: 708 RIDQEVSTQFYKSYTKSPILQGKNYLIFEIAKRYLSNFLDLENDRLKKGEAIRIEKIEKN 767 Query: 886 -PAKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKLIDP 935 +K+ I S+ + G DR++ +G I DYKTG + + D Sbjct: 768 LKSKINISSLDFPVYIRGKVDRVE-NCNGITRIIDYKTGKVEQSKIEIVDWENITTDYDK 826 Query: 936 -----QLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 Q+ A +K I + + + LK + S D + Sbjct: 827 YSKSFQVLAYATMMKNE--ENIPLPLEGGIISFKNLKAGLLKFAKREKPRGGSKDFSINE 884 Query: 990 -----SLKNLIEIVTLLQNGEQPFI 1009 L +++T + N PF Sbjct: 885 DTFLAYEDQLEKLITEICNPAIPFT 909 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 57/437 (13%), Positives = 116/437 (26%), Gaps = 94/437 (21%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 ++ + +P+KRA L +E ++T + P I S+ + EE Sbjct: 18 PISDLVFILPSKRAGAFLLNELSQLT-SSTIFAPKIYSIEEFTEEVSGL---------KS 67 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + N L E + +P S + A++L + I+ Sbjct: 68 IDNTTTLFEFYEVYQKL--------------TPKEELESFETFLAWAQSLIHDFNEIDRY 113 Query: 163 EKKWED-LHALKNEKYGMWWLL---------AADF---LKIASKYWTERLVELNASSPVG 209 E + L + + W F L E L E Sbjct: 114 LIDAEKFFNYLADIQDINHWSKQHRTELIENYLKFWDQLPQYYSVLKENLFEKEQGYQGL 173 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + A + K + + G A + + N A V +D Sbjct: 174 IYRSAASKVAVYASKNSNQEYVFLGFNALNSAEQVIFQELLQQ-NLAKVFWDIDNVFLKD 232 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + Y +P + Sbjct: 233 YHHEASLFIREYLKDWPFYKENPFH----------------------------------- 257 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389 +I ++ D+++ +A +A L + +K+ Sbjct: 258 -----------------PEIEEYREA-KDISITGIPKNIGQAKYLAELLANKSEAELEKT 299 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF---KLNDFMAI 446 A++ D +L + L +++I+ G PL +S+ SL + + + Sbjct: 300 AIVLGDESLLLPILNSLPPNVKDLNITMGFPLKNAPVTSLFNSLFDLHTKSGSSYYYKNV 359 Query: 447 ATLVKHPLAKFGFPEKY 463 ++ HP Sbjct: 360 IAIINHPSLHQILKPYA 376 >gi|223042890|ref|ZP_03612938.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14] gi|222443744|gb|EEE49841.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14] Length = 1155 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 121/958 (12%), Positives = 272/958 (28%), Gaps = 135/958 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIA 191 +S L L S + ++ LA+ I + + L E + + + Sbjct: 104 DSELKLYRSQSKYYGFSEKLAEQIQDFKKYSVTPDHLDQFITEHQLQTRTQHKLEDITLI 163 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K R+ ++ + + + +K + I I G R++ + Sbjct: 164 YKELESRMSGEFITTEDSLERFIDQMSKSEWLK--RAEIFIDGFYNFSTLEYRIIEALVQ 221 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H VL D + ++ + TH + +L L+ K Sbjct: 222 HAKSVTVLLTTDGNQDP----------FSLFRKPSEVLTHLEDIANQLNIHLNKTLFQQK 271 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + S + P S + V ++E+ N REE Sbjct: 272 FRFENDDLKHLESDFDALQMTPQSHS-------------------NHVEILESSNMREEV 312 Query: 372 ISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + + ++ + A++ D + A + + + I +I +S Sbjct: 313 NELARRIIRDVRDHHLRFQDIAILYRDESYAYLFESIFSLYDIPFNIDTKKSMSHHPIME 372 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++ SL+ I + A+ L K + F + LE AL +D Sbjct: 373 MIRSLIEVIQSNWNINAMLRLFKTNVLTSQFKNSSYL--IDLLENFALERGVYGKRWLDE 430 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELA-VLLVDHILQ---CITPLVTYKTNKNST 544 + +D+ +H Q + + E+ L ++D +L ++ T + + Sbjct: 431 EVFHVDQFNKMGRKSHALTPQEKETYEEVVLLKNHVIDKVLYFEKAMSDATTVRDFATAF 490 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + +T + E + ++ + ++ + + Sbjct: 491 YESMEYFELPNQLMTERDEL-DVEGKHQQAEEIDQIWNGFIQILDDLVTVFDTQEMTLKQ 549 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++++ ++ + + I +++ N + + G+N+G P+ + + + Sbjct: 550 FLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKRHIYMVGMNDGSLPQPVSSSSLI 609 Query: 665 SRVMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSLRENNI-PTIASR 714 + + T++ A M + ++ SL N+ S Sbjct: 610 TDEEKKYFEQNAQIELSPTSDILQMDEAFVCYIAMTRAREKVTFSYSLMGNSGDEKEISP 669 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYL----------------DWTRKLD-YTTKQPHYKRP 757 +L ++ L N+++ + LD Sbjct: 670 FLSQIKDLYHHLDIVNIQQEHEEQPISFMQHVHQTKIELFDALRTWLDHEDVDIRWLDAY 729 Query: 758 KPFPPLEAQPRTY-------------------------------SFSEIKQLINDPYAVY 786 + E S S + P+ Y Sbjct: 730 QVIRDDEQLNDGLDYLITSLTYDNETVQLNETLTKQLYGTTINASVSRFEGYQQCPFKHY 789 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 A L+L+ K + D G +FH+++ + + +K + + E Sbjct: 790 ASHGLRLNERS--KYELQNFDLGDIFHSVLKHISDRVEGDFKNLDRKKIKALTEEALELI 847 Query: 847 NLPPHIDII--------WRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------- 888 +++ I + L + S + Sbjct: 848 LPKVQFNLLNSTAYYKYLSRRIGSIVETTLNALKYQTGFSKFIPQRFETGFRKSPRNKDE 907 Query: 889 ------MAIESIGIHLTGFADRIDLL--KSGFVD-ITDYK--TGDNP-KKETAQKLIDPQ 936 + I I++ G DRID I DYK TG + Q Sbjct: 908 LVAQPLHTKQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSTGSATLDLTKVYYGLQMQ 967 Query: 937 LSLEAAALKAGS--FSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL 991 + + D K L Y + + + K D + + EL + Sbjct: 968 MMTYMDIVLQNKDRLELTDIVKPGGLLYFHVHEPRIKFDNWSKIDEDKLNKELIKSFK 1025 >gi|322411490|gb|EFY02398.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1074 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 129/988 (13%), Positives = 270/988 (27%), Gaps = 139/988 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P + + K L D+ ++T Sbjct: 75 SESKQALDETALAMIFYRVLMQLTPEDLP-----VYGRLKDDPAFIKQLIDLYQELKTAN 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 +L L D ++I S + A A + Sbjct: 130 LSVYELTELDTP------GKQEDLIRIISLAEELMTQQDYHQDSALMSFAKTIATGQLDE 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + + ++ + + + + S Sbjct: 184 QLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKSYQKPF---IKGNIYEAS 240 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 QY + + V + R + ++ D + + Sbjct: 241 IQFLQGLAEQYETKPI----------YSQSEKVFAPSFSRVTQLFEAHHDFSQVDWQLEE 290 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLAR 400 + D+ + ++ ++EE +A A+R L E + L+ Sbjct: 291 KDK----------EDIHIWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLLGDVDAYQL 340 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 ++ +F I + ++ + SL + I L+K L Sbjct: 341 QIGPIFDKFEIPYYLGKAESMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGSFAD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ Sbjct: 401 -------------------------SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT--VTCLQNVCLDEHRKLPNLWFE 578 LL + +PL ++ +L + V +N+ +L E Sbjct: 436 ELLNEIREAIFSPLQALFKSQKQLGTSL-LDKLMTFFKDVQLAENMKNLGQNELETEKNE 494 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E KT + + + +T K + + +I + + + I + Sbjct: 495 EVWKTFTDVLTSFYQTFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQP 554 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------NLKTAEKYIGQAAH 686 + + GL + +PK + LS ++ + + Q A Sbjct: 555 HSKPFVYAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSRKNHQTAL 614 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 615 SLLNA-ATQELVLSVPALVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYKA 673 Query: 726 -----------DFFDNLKKRG-----QCYLDWTRKL-----------DYTTKQPHYKRPK 758 ++ ++ R+L D+ +P Sbjct: 674 LLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLDDHLVTKPLASEVI 733 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 +P S + + N+ Y + + +L L PD G H + Sbjct: 734 EARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIH--PDARIHGQYLHRVFEL 791 Query: 819 LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 ++ + + F+ + L I+ S Q+ Sbjct: 792 VMTDHTAASFDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQN 851 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDP 935 + P + + I + G DRID L G + I DYK+ N + P Sbjct: 852 -MTVSRQEEPFALQVTDQ-IVVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGKFYNGLSP 909 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL AAL+ F D + Y+ L++ D+L E K L Sbjct: 910 QLVTYLAALQQQ-FGPDDLGHLFGAMYLHLQEPKLDLATVK----ALDDKLVESIYKELT 964 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + E+ ++++ ++ I S Sbjct: 965 -YKGIFLESEKEYLANGAYQTRNAIYST 991 >gi|291458761|ref|ZP_06598151.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral taxon 078 str. F0262] gi|291418678|gb|EFE92397.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral taxon 078 str. F0262] Length = 1159 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 106/972 (10%), Positives = 236/972 (24%), Gaps = 82/972 (8%) Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 L R+I + + L L + + L I + E L Sbjct: 84 LPRIIDDTGKVMLLRESSERVKDKLELYKNQLSRPGFLSELKSQISEFYQYRIRPELLED 143 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + L + + + E + E L+ E I+ Sbjct: 144 AAEKCSSSHMGAKLRELSLLYRAFLEYMEERGYMVEEELLDRLLSFLPET-KLLDGATIL 202 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 G TG P ++ + + L A++ + T Sbjct: 203 FDGFTGFTPVQLDIIEEMMKSCRSLLFSLCLGRGARGALYGEHRASELFFLTGQTAEKLR 262 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 + I L + + Sbjct: 263 LRAEKCSCPILPPIDLNRFDALTGRARNPSHPLPRFQNAPALDYLERSLYRYSAAGTEGR 322 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELT 407 + + EA ++R E +A + ++ E + A++ ++ R + Sbjct: 323 NFALDGSIEIWEAADQRMEIERLASEIERAVREEGLRYQDIAVLISEPEQYRDLIYRCFL 382 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSR 466 GI + L + + +L + + + + F ++ ++ P + Sbjct: 383 AAGIPYFLDDPGSLLDSPPAKLLRAAIEVLERAFSFDSVIRCLRALPGRTPEEENEIDLF 442 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 E + SL + + + + Sbjct: 443 ENWLRERGIRGAAAYQREWEHFDSLRRKLAGPLLRLLSEGNERGASASRRISALRGFLTE 502 Query: 527 ILQC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + L + + +L + + + + + Sbjct: 503 LRAREYISKEAERLREIGEQNRAEELLRGMDAVEELLLRFSELLGETRISRREFSELLDA 562 Query: 581 G--KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 G + + ++ + + G + ILG E L Sbjct: 563 GLSEASIRIIPATLDQVVIGDLTRSRFSSPKRFFLVGVSAGALPGSGKGTGILGDRERAL 622 Query: 639 LNFDTLILGGLNEGVWPKN----------TAKNPFLSRVMQSDLN--------------- 673 L ++ L ++ LS ++ Sbjct: 623 LRSLSIELAPDQAEDALLQRFYIYRALLNPSEKLLLSYPLRGRNGKSRKPSPLIEALRGI 682 Query: 674 -------LKTAEKYIGQAAHDFEMANGTR------HLIYTRSLRENNIPTIASRWLQRLL 720 E + + + + R Sbjct: 683 FPGLSIRSLRHEPEEIYTREELLRSLSRTLPLYLEERERKEAREDKGESASEGREAVEAP 742 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP---HYKRPKPFPPLEAQPRTYSFSEIKQ 777 G + R Y D KL + + + S + ++Q Sbjct: 743 SEGRLLSGFSALLRDPSYRDRASKLLDAAFTSYQSGKLDREIAEEIYGEILYGSITRLEQ 802 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHL- 834 YA + R L+L + D G L+H + EL ++ ++ PE++ Sbjct: 803 YNRCAYAHFLRYGLQLSERK--SNEVRALDLGNLYHLAMEELFRELSKRGQSLPELSREE 860 Query: 835 --------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVN 884 + + + + E+ + +I + + E+ + F+ Sbjct: 861 ACALSDACVLRASEQYNERMMQDSARNRYLLRRISEICRTTVWALSEQLRRGDFRPAFLE 920 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLE 940 + G L+G DR+DL ++ V + DYK+G + + QL+ Sbjct: 921 KDFHLTRP--GFRLSGRIDRVDLCETEKSIYVKVLDYKSGRTVFDLNRIYEGLQLQLATY 978 Query: 941 AAALKAGSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---- 994 ++V A +FY R+ D+ L + L Sbjct: 979 LKVALEELQRDYPGKEVLPAAMFYYRIDDPILDYVPGEDEDGGEDRRLRALRVDGLVNAD 1038 Query: 995 IEIVTLLQNGEQ 1006 E+++ L Q Sbjct: 1039 REVISHLDREFQ 1050 >gi|255323799|ref|ZP_05364925.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum SK141] gi|255298979|gb|EET78270.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum SK141] Length = 1027 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 123/1049 (11%), Positives = 271/1049 (25%), Gaps = 170/1049 (16%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 ++ R +P + + + P+K + LR E E + +++S+ + Sbjct: 45 HALDKARETGADP---SGILVIAPSKESGARLRRELSERLEDYAAQTSMVRSVHSLAFAL 101 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 RL+ A + R L +D + P + + Sbjct: 102 LRTAAEEEL----------RLITGAEQDAVIRELLTGQAEDGHGSWPAEM-RPALEYVGF 150 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ L D + DL L E W A +FL+ + +L+ S Sbjct: 151 ARQLRDFLLRSIERGLGPGDLERLGAEHGRPMWSAAGEFLREYERV---QLLSRAHSYSA 207 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + + L + II+ + P +L+ +A P +V+ G D Sbjct: 208 AELVTAVLQRPQLLREHPFHTIIVDDAQLLDPTAGKLIRDMA--PQADLVVVGGDADQSV 265 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + ++ + Sbjct: 266 FAFRGASSRFLRDFPADHDIELTEPHRTPA------------------------------ 295 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 +I + + A+ R + + R Sbjct: 296 ------------------PACISIVDSDGSLRDVVANTVRRRHLEDGVPWR--------D 329 Query: 389 SALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 A+I +++ L G+ + IS + L+ S + L A+ + + Sbjct: 330 IAVIVRSTGDIGQMRRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRALEEDLSNSELE 389 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+ P+ RG I L+ L+ + P Sbjct: 390 ELLTGPVGGADPVTLRRLIRGLRRWDSTTRG------IDSLRGLLYGEL---------PD 434 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + +L+E + + + + L + + + S ++ Sbjct: 435 FNGQLTEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGAT 494 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + +L + + + S I + + + Sbjct: 495 GSQADRDLDAMMALFDAAGDYVERRPDSSLRAF----LTHITEQELPTGVRDRRTAIPQA 550 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------- 678 + IL + +DT+I+ G EG WP + DL + Sbjct: 551 VEILTAHGAVGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPVSHVA 610 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + + F +A + E + + SR++ G +++ Sbjct: 611 SRLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQA 670 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPP----LEAQPRTYSFSEIKQLIN----------- 780 + L T+ P S + Sbjct: 671 KRALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNPESSEV 730 Query: 781 --------------------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 P ++ R + + H + L + + ++ Sbjct: 731 ERKQAARQLARLAAADIPGAHPEQWWSARSVAAEVPLHTSGSLSPSRVEALLNCPLKAVL 790 Query: 821 KKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-------------- 863 + + + ++ F +I Sbjct: 791 GNVAEDPSTEEHLLRGTLAHAFFEALGRGMDAEKAKLLVMEAFERIQDVPQWQLRFKLDE 850 Query: 864 ----SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 E + + + E V IP + + S + + G+ DR+ + G + D K Sbjct: 851 FSTLLDRAREWACQSEVNQELAGVEIPVGVRV-SEEVRIGGYMDRLLRDEEGNYLVVDLK 909 Query: 920 TGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL---FYIRLKQKFKIDCIT 975 TG + P K+ + + QL AL G+F + + + I Sbjct: 910 TGRSKPAKKEGEDHV--QLMTYQLALAHGAFDGHQVHDGEGMPRQGGVLVYPGATTKKIG 967 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + + E E+ L +V ++ Sbjct: 968 EIWQSDKSPEALEEFAALLPPLVEEMRGP 996 >gi|300768582|ref|ZP_07078481.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493889|gb|EFK29058.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1201 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 108/1003 (10%), Positives = 277/1003 (27%), Gaps = 165/1003 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + L R++ ++L ++ LA I+ ++ Sbjct: 92 PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T + ED+ L L I K + + P + L Sbjct: 139 TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + GT + +AG +++T+ GA V L + N Sbjct: 198 QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 T + + + + + + ++ + + + + + + + Sbjct: 251 GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391 + ++V L D+ + E + +R + D + + + Sbjct: 307 YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355 Query: 392 ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 +T + + + I + ++ ++ +L + + + + ++ Sbjct: 356 MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415 Query: 451 KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 K L + +A + E L+ + + + ++ T+ + Sbjct: 416 KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563 + +S + + + + + + K + ++ S + ++ Sbjct: 475 TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 LD E+ +T + + + +++ ++ +G + Sbjct: 535 QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679 + I + + + + + G + V P N LS +Q L+ + Sbjct: 595 TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654 Query: 680 YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725 Y+ +A + RHL ++ L+++ + R +QR L Sbjct: 655 YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714 Query: 726 -----------------------------------------DFFDNLKKRGQCYLDWTRK 744 + + ++ ++ Sbjct: 715 TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774 Query: 745 LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L + R P L S S++++ + YA + + Sbjct: 775 LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGHQIYTSISKLEEFYRNQYAYFLK 834 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841 LKL F+ G FH ++ LIK + P ++ + Sbjct: 835 YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892 Query: 842 HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887 ++ + + +F + S+ E + Sbjct: 893 ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952 Query: 888 ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938 I++ +H+ G DR+D + I DYK+ + + A + Q+ Sbjct: 953 LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012 Query: 939 LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977 A+ + K+A Y+ ++ Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055 >gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 991 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 112/1011 (11%), Positives = 264/1011 (26%), Gaps = 124/1011 (12%) Query: 46 SVTIYVPTKRAIQEL--RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 V T++A E+ R + + G T I + + L+ + Sbjct: 66 QVLALTFTEKAAAEMERRVDLLVPYGFTDTW---ISTFHAFGDRVLREHALVLG-----L 117 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S RLL + ++ ++ L ++ PL + + + L + + E+ Sbjct: 118 SPDFRLLTVPEQVIFFQEHLFEL--------PLDYFRPLGSPLRHVQALLQLFSRAKDED 169 Query: 164 KKWEDLHA----------LKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSPVGYQI 212 E + + + + + + + E + + Sbjct: 170 VGPEQYASYAEELVGRATAAPDDKTLAEQATREMEIARVYRQYQELMAREGKLDFGDLMV 229 Query: 213 ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + EH ++ I++ + A +++ + V+ D Sbjct: 230 RTLDLLREHPLVLQRLQERFRYILVDEFQDTNYAQFQIVKLLTASHRNVTVV--GDDDQS 287 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + + + L Sbjct: 288 IFKFRGASISNILSFRREFPDA-------------------ETIVLAENYRSTSSVLDAA 328 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 + + + + ++ ++ V + +EEA + + ++ Sbjct: 329 YRLIQHNNPDRLEYQEGVDKRLKPCNGDGPAVESVVFQTYQEEADWVVEKIEELIEAKAC 388 Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 A++ + A + L GI S L ++ S L + D + Sbjct: 389 ALGDIAILVRRNSDADPLLRALNMKGIPWSFSGAKGLYDRDEIRLVISFLRLLADPYDSL 448 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ L + + L A + L ++LD Sbjct: 449 SLFHLAGSDIYGLPAADLTLCNAHARRKHR------------SLYEVLLDLTRRPGAVPE 496 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + L L ++ + + + + + + Sbjct: 497 LSGVSTEGIAAATALLSDLHRYLDKAAREVTGRILYEF----------LMEQPGYGKRLL 546 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + R + L F ++ ++ ++ + V Sbjct: 547 HSNSSRDHQRISNLAAFFGLVQRFGEVAPQDRVAGFVP--YLTMLIEAGENPPVAEGEAA 604 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + +L +++ L F+ + L GL E +P + L + + + + Sbjct: 605 EEGVAVLTLHKAKGLEFEAVFLVGLVEKRFPSIDRREAIPLPDELIKETLPSGDFHQQEE 664 Query: 685 AHDFE--MANGTRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 F M RHL TR+ SR+L L L + + + + Sbjct: 665 RRLFYVGMTRAKRHLFLTRAKDYGTKREWKRSRFLAEALALPREEEEQPWRGTAEAVIGR 724 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + P + S +I + P IL++ + Sbjct: 725 YAPPPQVAIDLAIRADTPL--------SLSHYQIDDYLTCPLKYKYVHILRVPVLREHT- 775 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHL 859 G H + +R+ T ++ L+ FE + Sbjct: 776 ----IIYGAALHRAVQAYNTQRLTGQTMSLDDLI-----KSFEAHWVNEGFISREHEERR 826 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + + V + + +TG DR+D + G I DYK Sbjct: 827 MQEGRDALTRFHAGAAKGPLPTSVEKRFRFQLGDD--LVTGIMDRVDERE-GETVIIDYK 883 Query: 920 TGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 + ++ A + QL+L A A + D ++ L + Sbjct: 884 SSSVRDQKAADKEARESQQLALYALAYRESIGRLPDRVELHFLT------PGGVIVGQAV 937 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 KK+ D+ E+ G + + S+ + + Sbjct: 938 KKEKDLDQAVERVRAA--------ATGIRAGLFQATPSQWVCSFCAFRTIC 980 >gi|308181396|ref|YP_003925524.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046887|gb|ADN99430.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1201 Score = 175 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 108/1003 (10%), Positives = 277/1003 (27%), Gaps = 165/1003 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + L R++ ++L ++ LA I+ ++ Sbjct: 92 PRLSAAGIDMLLYRILQRHADELRLFGGEISQT-------------GFVTQLAREINELQ 138 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T + ED+ L L I K + + P + L Sbjct: 139 TANLQPEDVVQLAANAQAGDLQAKLHDLAIVYKDFVAATADKYLK-PADILVQLNAYLRR 197 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + GT + +AG +++T+ GA V L + N Sbjct: 198 QDLHGTHVYVELAGFAQLPAQEQGIVTTM--LEQGADVTISLMLD-----HKVVDRAPEN 250 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 T + + + + + + ++ + + + + + + + Sbjct: 251 GTLFYQSGRLYYRLYQYARIRQIPVSQD----IYAETPRVAPGLVALDDFWRGQPQAATG 306 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------SLDENKKKSAL 391 + ++V L D+ + E + +R + D + + + Sbjct: 307 YEEPN-----------TNVHLFRTDSRQTELAQVGRMIRAMVAKKHADPADDYHYRDFLI 355 Query: 392 ITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 +T + + + I + ++ ++ +L + + + + ++ Sbjct: 356 MTRHLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINALFDIDAQQYQYRDVMRVL 415 Query: 451 KHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 K L + +A + E L+ + + + ++ T+ + Sbjct: 416 KTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQREDWQYFQL-TEGDAGVE 474 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQN 563 + +S + + + + + + K + ++ S + ++ Sbjct: 475 TDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLVNFLTSQGVTDQLLAWRD 534 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 LD E+ +T + + + +++ ++ +G + Sbjct: 535 QALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFLALLQAGFEGASYSQIPS 594 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR----VMQSDLNLKTAEK 679 + I + + + + + G + V P N LS +Q L+ + Sbjct: 595 TLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSDVDKENLQPTLSSLDGDH 654 Query: 680 YIGQAAH----------DFEMANGTRHLIYTRSLRENNIPTIAS----RWLQRLLVLGGT 725 Y+ +A + RHL ++ L+++ + R +QR L Sbjct: 655 YLNDSAVVQLGDESCLNYLAFLSARRHLFFSAPLKDDQETDLNWSNYVRRIQRQFNLREH 714 Query: 726 -----------------------------------------DFFDNLKKRGQCYLDWTRK 744 + + ++ ++ Sbjct: 715 TYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLTTNTDRNRVGAPLQPAPVWVWLRQQ 774 Query: 745 LDYTTKQPHYKR----------------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L + R P L S S++++ + YA + + Sbjct: 775 LTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALYGYQIYTSISKLEEFYRNQYAYFLK 834 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDS 841 LKL F+ G FH ++ LIK + P ++ + Sbjct: 835 YGLKLRERDVFE--LSAASTGEFFHAVLDGLIKALRSDQIPLAQASDQQLGQYLETVTRQ 892 Query: 842 HFEKENL----PPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPA-------- 887 ++ + + +F + S+ E + Sbjct: 893 ILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQSKLSAAEPKQTEVLFGNVGKEHG 952 Query: 888 ----KMAIESI-GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLS 938 I++ +H+ G DR+D + I DYK+ + + A + Q+ Sbjct: 953 LKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVDYKSSQHKFDFQEAYYGLAMQML 1012 Query: 939 LEAAALKAGSFS----QIDCRKVANLFYIRLKQKFKIDCITND 977 A+ + K+A Y+ ++ Sbjct: 1013 TYLDAVLHNEQALVGSDQAAVKLAGALYMHIQNPTLKPKDIQG 1055 >gi|283470165|emb|CAQ49376.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ST398] Length = 1158 Score = 175 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NIEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + + ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|258648077|ref|ZP_05735546.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] gi|260851938|gb|EEX71807.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] Length = 905 Score = 175 bits (442), Expect = 5e-41, Method: Composition-based stats. Identities = 80/469 (17%), Positives = 158/469 (33%), Gaps = 43/469 (9%) Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + +I RL ++ E L ++G LE+R L+F+ ++L NEG+ Sbjct: 438 ESGMLTVTPPTLHRLIRRLAAQASIPFHGEPVVGLQLMGILETRNLDFENILLLSTNEGI 497 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTI 711 P + + F+ ++ L + A+ F RH+ +T + + Sbjct: 498 MPASGIELSFIPFAIRRAFGLPSTTHRSAVYAYYFFRLLQRARHVTFTYNATPDGLRGGE 557 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 SR++ +L ++ L ++ ++R P Q S Sbjct: 558 MSRFMMQL-LVSDRFRIRQEALNAPRLLPQPTPIEVARPADLFERLNPVR--GGQQVPLS 614 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S I + I+ P Y R+ +L D G +FH + + K K Sbjct: 615 PSSINKYIDCPLQFYYHRVARLTPHEDTDAALDNRIFGNVFHQLAEDFYKPFEGKGKIDP 674 Query: 829 ------PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 E + +I+ F K N P ++ + + L ++ + +E + Sbjct: 675 QRLAYYHEHPERLNPLIEEAFAKNNAPY--RLVDATIVRNLFRRMLAYDY-RLADLEIVR 731 Query: 883 VNIPAKMAIE------SIGIHLTGFADRIDL--LKSG--FVDITDYKTGDN-PKKETAQK 931 + +++ ++ G DR+D+ SG + + DYKTG K + Sbjct: 732 LECDVDISLPLKIDGTVRPFNVGGRIDRLDIACTPSGLRTLRVVDYKTGTKEQKANKMED 791 Query: 932 LIDP---------QLSLEAAALKAGSFSQID-CRKVANLFY-IRLKQKFKIDCIT-NDKK 979 L P Q L A A++ V+ + + I L + I ++ Sbjct: 792 LFIPKKSRPYYIFQTFLYALAVQDKVCEFTGEDLPVSTVLFHIPLINEAYDPWIPFAKER 851 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 Y L+ + IE++ + + P ++ L Sbjct: 852 VYDFGPLAADFREQSIELLQRMMD--TP-TFRQTDDLNVCAHCDFQQLC 897 >gi|227550044|ref|ZP_03980093.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077890|gb|EEI15853.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 1096 Score = 175 bits (442), Expect = 5e-41, Method: Composition-based stats. Identities = 135/1057 (12%), Positives = 272/1057 (25%), Gaps = 169/1057 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKST---ILPIIKSLGDVV------------EEKFT 90 V T++A QEL + + +L + G++ + + Sbjct: 62 EVLGLTFTRKAAQELGKRIRDRLSVLAANDALLRRLDPSGELADTLRVIAPTVATYDSYA 121 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 DL+ Y L PV RL+ A L I + L E + +S A L Sbjct: 122 GDLVREYGLLVPVEPNARLITDAELHAIAHEVVLGYRGSLVAEGGKNPSVSTVVANVLDL 181 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMW-------------WLLAADFLKIAS---KY 194 N A +++ E E L + W + + Sbjct: 182 NTAMGNSLMQPEYVAGEVHDFLAETESLPGRGDPATFTKEMAGWRDTQQLRRAYLPLVEE 241 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTV 249 +L E + R +H + +++ + A L+ ++ Sbjct: 242 LNAQLRERGLVTFNEQMSVAARLAHDHEFVGASQRQRYRVVMLDEYQDTSHAQRVLLRSL 301 Query: 250 ANHPNGA--------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 A V D W T + + T Sbjct: 302 FGQGRNADQPRRHPLTVTAVGDPMQAIYGWRGATAANLAAFVEDFPEPTG---------- 351 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 K+L + ++ + ++ P +V L Sbjct: 352 ----APAPTKQLTTSWRNPAEVLALANRVSDSLLGTGS--DRVVAALDPRPGAGAGEVEL 405 Query: 362 IEADNEREEAISIAIALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDIS 416 ++E EE +A L D + +A++ + V L G+ +I Sbjct: 406 GFFEHEDEEIDFVADNLAAQYDAARAAGEPFSAAVLVRKNKTSPEVAEALEERGVPFEIV 465 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L + ++ + + + D A ++ P G + + A A Sbjct: 466 GLAGLLDVPEVADTIAIASMLVRPGDSAAALRILAGPAVGLGLADLDALSRRAANLRGAA 525 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + D + ++ + + L + L Sbjct: 526 PAAPKPDEAADPTTHFEAQLEESVAEAQRITAGADTPAGLTDAVADLGETERYTPDGLRR 585 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 K + + + +L + + R G + + + Sbjct: 586 IKAVASKLRWLRTHALGKRLPDVFADIISVFGIRTEVLARPSSTGTVHLDRLLEEVSSYP 645 Query: 597 CIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A +++ ++ G ++ + IL +++ L +DT+ + + + Sbjct: 646 GTSLTALLDYFELTREHEGGLAPGNVPVRTDRVQILTAHKAKGLEWDTVAVIRADAETYK 705 Query: 656 KNTAK-------------NPFLSRVMQSDL-------NLKTAEKYIGQAAHDFEMA--NG 693 TA + F +++ K ++A F +A Sbjct: 706 ARTATFLTQPQLVPDEDFDAFADAENRTEFAKAAKAYVAAVRTKLAEESARLFYVAVTRS 765 Query: 694 TRHLIYTRSL--RENNIPTIASRWLQRLLVLGGT-------------------DFFDNLK 732 R LI T S + L D + + Sbjct: 766 ARKLIVTGSAVKPGRKKVAEPYEHFAAIRDLVPETSVVHWYDGSSADVDEQEDDHDNAVP 825 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE---------------------------- 764 +R + + R + P Sbjct: 826 QRTGLWPHLQVEPGDAETAELVARARESLPEYIDGELYGLWERDTSALIEEHLAAASGEV 885 Query: 765 --AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 P + S++ L D ARR + RGT FH + E Sbjct: 886 PVMMPGELTASDVVALSADSEQF-ARRARRPVPFKPNTY----AKRGTAFHEWLEEFYGA 940 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 R E+ P ++ E + F Sbjct: 941 RPLLTEDEL-------------PGVDEPEVETRTLEKLKN------NFERSHWARRTPAF 981 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 V P ++A+ + G D + + +G + D+KTG P + + QL++ Sbjct: 982 VEHPFELALGES--VVRGRMDAVFMDDNG-WTVVDWKTGTKPAPAQMKSAM-LQLAVYRE 1037 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 A + + +D R V FY+R + F + + Sbjct: 1038 AWRRIAGDGLDVRAV--FFYVRTGEDFVPSDLPGSDE 1072 >gi|314936815|ref|ZP_07844162.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp. hominis C80] gi|313655434|gb|EFS19179.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp. hominis C80] Length = 1162 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 120/950 (12%), Positives = 257/950 (27%), Gaps = 144/950 (15%) Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERL 199 S A+ ++ L++ I + L L++ + + + + Y+ ERL Sbjct: 112 SQADYYGFSEKLSEQIQDFKKYSVTPHQLDLFLEDNELQTRTRHKLEDISLIYHYFEERL 171 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + I I G +++ + + +L Sbjct: 172 --NGEFITAEDSLNYFIEIMHKSEWIKHADIYIDGFYNFSTLEYQIIKALVQNAKQVTIL 229 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D H K D L +E L N Sbjct: 230 LTTD-----------------------GNEDHF-SMFRKPSDVLIHLKEIANELHIPLN- 264 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + + ++ + N + + L+E+ N REE IA + Sbjct: 265 ----EHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEVNEIARRII 320 Query: 380 MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + A++ D A + L ++ I +I ++ ++ SLL Sbjct: 321 KDTRDKHFRYQDIAILYRDETYAYLFESILPQYDIPYNIDTKKSMTHHPIMEMIRSLLEV 380 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I + L K + F + LE + +D K +D Sbjct: 381 IQSNMGLSPMMRLFKTNILSNQFKNSSYL--IDLLENFVIERGIYGKKWLDDKLFNIDNF 438 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLL----VDHILQCITPLVTYKTNKNSTCGNLSISD 552 H + + + ED + + + + + + D Sbjct: 439 TKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILRFEKAMLHSKNVRDYATAFYETMEAFD 498 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 K + + L + ++ L + ++ + + ++++ Sbjct: 499 LPKYLMAHRDELDL-KGDHEKAEEIDQLWNGLIQILDDLVTVFEEEEMSLNRFLEVFDIG 557 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ++ + + I +++ N + + G+N+GV P+ + + ++ + L Sbjct: 558 LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVMPQPLSSSSLITDEEKRLL 617 Query: 673 N-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722 T++ A M + ++ SL S +L ++ L Sbjct: 618 EERGSVELSPTSDILQMDEAFVCYIAMTRACEQMTFSYSLMGMQGDEKEKSPFLNQIQAL 677 Query: 723 GGTDFFDNLKKRGQCYL-------------------DWTRKLDYTTKQPHY--------- 754 N+ Y W + Sbjct: 678 FSNLDIKNIHYLHHAYPLTLMEHPHQTKIHLFEALKSWLEEEAVADTWLDAYKVISENEE 737 Query: 755 --------------------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 P+ L S S + + P+ YA L+L+ Sbjct: 738 LNDSINYLSTALTYDNETIQLTPQLSEALYGTSINASVSRFEGYNDCPFQHYATYGLRLN 797 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-- 852 K + D G +FHN + + K + + N + + + + Sbjct: 798 ER--TKYQLESFDLGNIFHNALKYISDKVNGEFSQLDNQKIHALTEEALQHVLPQVQFNL 855 Query: 853 ---DIIWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MA 890 + +R I S L+ + + M Sbjct: 856 MDSNAYYRYVSKRIGVIVESTLKALRYQNENTKFRPKRFETAFRKKPRTEEELIAHPLMT 915 Query: 891 IESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSLEAAAL 944 + I IH+ G DRID K+ V+I DYK+ N + Q+ + Sbjct: 916 TQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYKSSNHSANLNLKKVYYGKQMQMMTYMDIV 975 Query: 945 KAGSFSQID---CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 S ++ K L Y + + +L+E++L Sbjct: 976 LQNS-ERLGLSSEVKPGGLLYFHIHDERLKFEK--------WGDLTEEAL 1016 >gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] gi|326949650|gb|AEA23347.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] Length = 1106 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 115/1059 (10%), Positives = 254/1059 (23%), Gaps = 139/1059 (13%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT------GKKSTILPIIKSLGD 83 L+ + +V + V ++RA ++R + + +T +++++ Sbjct: 46 LLAALAERVREGVAPENVLLLVGSRRAAADMRERLTPLLHPHGGDPESTTRELLVRTVHS 105 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE-SPLSLPISP 142 + P RLL A ++ R L I+ P+ Sbjct: 106 YAFGVLRLHAARHGDPPP------RLLAGAEQDVVVRELLAGEIEGDAPDSGWPDRLRPA 159 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A L +++ E+L AL W A F ++ + Sbjct: 160 LGLPGFAAELRELLLRAAERGLGPEELFALGERHGVDEWRAAGRFFRVYEQ--------- 210 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 V A + + A + + + Sbjct: 211 -----VVLLRGAAGRGAPQATAPALDSAELVAAALDTLAADPDLRAAEQRRVRHLFVDDA 265 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 P + T ST T+ + ++ V+ V + + Sbjct: 266 QDLDPQQLELVATLGSTASTTLLAGDADQ---AVLAFRGADPQGLRAVEAETVVLDVDHR 322 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + + V + + EA IA LR + Sbjct: 323 SRAAVRAATGRLAARLPGAGAGRVRVAAGPEDDEGQVLVRVFGSVAAEAAWIADRLRCAH 382 Query: 383 DENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTSLLNAI 437 + + + RR L R + + +PL+ L +L A Sbjct: 383 LVDGVPWSEMAVLSRSTRRSLPALRRALVAGGVPIVAPPDELPLARQPAVVPLLMVLRAA 442 Query: 438 FKLND--FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + A A L+ PL R A + + + + D Sbjct: 443 TRPEELDADAAAALLTSPLGSGDPMRMRRLRRGLLRLRAAAEPDPPAAHATGGTAALADV 502 Query: 496 IAT------------QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 A + P + L + + + + + Sbjct: 503 GAERVSSDPLLVEALRAAAAGEPDPLAALPPSETAPLRRVGALLATAAAAARDGASVEEV 562 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + +L ++ +S + Sbjct: 563 LWQVWQQTGLADRWSAASGRGGPAGAAADRDLDAVLALFDAAARYSDRLPGADVAGFTDY 622 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + + +++ P+ + +L +R + + + G+ EG WP + Sbjct: 623 ----LADQQLPTDSLAPRAPGGDAVALLTAHAARGREWRVVAVPGVQEGSWPDLRLRGSL 678 Query: 664 LSRVMQSDLNLKTAEKY----------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 L DL AE + + + H + +++ + S Sbjct: 679 LGNERLVDLLAGVAEPDGSVSRVAPLLAEERRLFYVACSRASHTLLVSAVQGEDE--QPS 736 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP-------------- 759 R+L L L R L + + +P Sbjct: 737 RFLDELDPLPAGAAETRTVHRPGRSLVLAELVGELRRAVCTPGDEPAAVARRERAAAQLA 796 Query: 760 -------------------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + + S S++++++ P R Sbjct: 797 RLAADGVPGARPDEWYGLAPVSTDAPLRVPGEVVPVSPSDVERIVACPLRWVLERHGG-- 854 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 G+L H ++ + + SH + Sbjct: 855 ----GDVGALAAVTGSLVHALVQASAAGAQPAELEDAL----RSAWSHLDAGAPWFGRRE 906 Query: 855 IWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIG------------------ 895 + + +F + + + V P ++ + G Sbjct: 907 LE--RVRAMLAAFDDWVRTSRDQGLRLVAVEQPVRLDLPVEGDLPPDGSAQPEVGRSGGP 964 Query: 896 -IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI-- 952 + L G DR+++ G + D KTG PQL++ A G+F ++ Sbjct: 965 WLQLRGRVDRLEVDSEGRPVVVDVKTGKT-AVSARAAAEHPQLAVYQLAAALGAFGRLLE 1023 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + L + + + Sbjct: 1024 KGVTPGGARLVYLADRKASGQAKEPSQPPLDAAELARWR 1062 >gi|209523273|ref|ZP_03271829.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima CS-328] gi|209496424|gb|EDZ96723.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima CS-328] Length = 883 Score = 174 bits (441), Expect = 7e-41, Method: Composition-based stats. Identities = 98/721 (13%), Positives = 211/721 (29%), Gaps = 128/721 (17%) Query: 359 VALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDI 415 V N E + ++ + + + K L+T D + L++ + + + + Sbjct: 233 VQCHIYPNLEAEIRGVLSQVKQLIIDGVSASKIVLVTQDEKTYAPLLLDIAWEYQLPLRL 292 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 IPL + L+ I F + A L+ HPLA++ K A+ Sbjct: 293 FYKIPLRNIRLGYWIALLIEVIENNFPFESTAKLLHHPLARY-LTYKQWLEAR------- 344 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R + S L + VD I Q + Sbjct: 345 -----------------QKRPNNLAEWEELGLNLSLLKFPQSDTLPNWVDRIKQVLKFFD 387 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 K + + ++ + + + +R+ E L Sbjct: 388 IRKNSSQWSREIVAFNQLETAWLELSKLDGDRLNRQEFFQDILEIITKLKVPMQ------ 441 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + + L + ++ + L G EG+ P Sbjct: 442 ---------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILP 474 Query: 656 KNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI 708 +P L L+ L+TA + F T+ L ++ + + + Sbjct: 475 AAIENDPVLDFYESRRLSQFNITLETAIDIAQRNELCFYELLRIPTKSLTFSCAEQHHKK 534 Query: 709 PTIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 P + S + RL + ++++ + YL +L + Sbjct: 535 PLLPSPYSTRLGIETTPPPLLNLASIEEARRYYLQQPYQLSNDVIVNDIIKNWQVEQRRE 594 Query: 766 QPRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 + +S S++ L P+ +A +L L + + + Sbjct: 595 SGESPDEYDGVIGIGVDYQNRIFSASQLTALGQCPFKWFATYLLCLKEPSEAEAEITGSL 654 Query: 808 RGTLFHNIITELIKKRI-------------NKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 RG L+H + L+K N+ + ++ + +F+K + Sbjct: 655 RGRLYHRCLEILLKDIKTQTDLRRLDIQDINQALSQAEAALQAEENVNFDKFIGWEARRL 714 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 ++ + E+ + ++ E I G+ + DRID +G + Sbjct: 715 EGLNMLELNLQA----EDFLLANAEIISRENYFDAEW--YGLKVIARVDRIDRTPTG-LL 767 Query: 915 ITDYK-TGDNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + DYK T +P Q+ L A+ F+++ V Y L ++ Sbjct: 768 VLDYKTTSSSPLGIKDDSGKAKINIQMPLYQQAIAQN-FNEVPEVDVK--LY-SLNKQRY 823 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + + + +E+ + L + G + ++ E+D + R Sbjct: 824 LKAKLTEPAI--LEAFAEEVKQRLQQ-------GN--YPVAPDQKQQVCQYCEFDSVCRK 872 Query: 1031 A 1031 Sbjct: 873 G 873 >gi|228474397|ref|ZP_04059132.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119] gi|228271756|gb|EEK13103.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119] Length = 1162 Score = 174 bits (441), Expect = 7e-41, Method: Composition-based stats. Identities = 123/950 (12%), Positives = 261/950 (27%), Gaps = 144/950 (15%) Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERL 199 S A+ ++ L++ I + L L++ + + + + Y+ ERL Sbjct: 112 SQADYYGFSEKLSEQIQDFKKYSVTPHQLDLFLEDNELQTRTRHKLEDISLIYHYFEERL 171 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + I I G +++ + + +L Sbjct: 172 --NGEFITAEDSLNYFIEIMHKSEWIKHADIYIDGFYNFSTLEYQIIKALVQNAKQVTIL 229 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D H K D L +E L N Sbjct: 230 LTTD-----------------------GNEDHF-SMFRKPSDVLIHLKEIANELHIPLN- 264 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + + ++ + N + + L+E+ N REE IA + Sbjct: 265 ----EHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEVNEIARRII 320 Query: 380 MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + A++ D A + L ++ I +I ++ ++ SLL Sbjct: 321 KDTRDKHFRYQDIAILYRDETYAYLFESILPQYDIPYNIDTKKSMTHHPIMEMIRSLLEV 380 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I + L K + F + LE + +D K +D Sbjct: 381 IQSNMGLSPMMRLFKTNILSNQFKNSSYL--IDLLENFVIERGIYGKKWLDDKLFNIDNF 438 Query: 497 ATQKNNTHVPHWQSRLSEEDKELA-VLLVDHILQCITPLVT---YKTNKNSTCGNLSISD 552 H + + + ED +V+ IL ++ + + + D Sbjct: 439 TKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILHFEKAMLHSKNVRDYATAFYETMEAFD 498 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 K + + L + ++ L + ++ + + ++++ Sbjct: 499 LPKYLMAHRDELDL-KGDHEKAEEIDQLWNGLIQILDDLVTVFEEEEMSLNRFLEVFDIG 557 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ++ + + I +++ N + + G+N+GV P+ + + ++ + L Sbjct: 558 LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVMPQPLSSSSLITDEEKRLL 617 Query: 673 N-------LKTAEKYIGQAAH--DFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722 T++ A M + ++ SL S +L ++ L Sbjct: 618 EERGSVELSPTSDILQMDEAFVCYIAMTRACEQMTFSYSLMGMQGDEKEKSPFLNQIQAL 677 Query: 723 GGTDFFDNLKKRGQCYL-------------------DWTRKLDYTTKQPHY--------- 754 N+ Y W + Sbjct: 678 FSNLDIKNIHYLHHAYPLTLMEHPHQTKIHLFEALKSWLEEEAVADTWLDAYKVISENEE 737 Query: 755 --------------------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 P+ L S S + + P+ YA L+L+ Sbjct: 738 LNDSINYLSTALTYDNETIQLTPQLSEALYGTSINASVSRFEGYNDCPFQHYATYGLRLN 797 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-- 852 K + D G +FHN + + K + + N + + + + Sbjct: 798 ER--TKYQLESFDLGNIFHNALKYISDKVNGEFSQLDNQKIHALTEEALQHVLPQVQFNL 855 Query: 853 ---DIIWR---HLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--------------MA 890 + +R I S L+ + + M Sbjct: 856 MDSNAYYRYVSKRIGVIVESTLKALRYQNENTKFRPKRFETAFRKKPRTEEELIAHPLMT 915 Query: 891 IESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSLEAAAL 944 + I IH+ G DRID K+ V+I DYK+ N + Q+ + Sbjct: 916 TQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYKSSNHSANLNLKKVYYGKQMQMMTYMDIV 975 Query: 945 KAGSFSQID---CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 S ++ K L Y + + +L+E++L Sbjct: 976 LQNS-ERLGLSSEVKPGGLLYFHIHDERLKFEK--------WGDLTEEAL 1016 >gi|116493559|ref|YP_805294.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus pentosaceus ATCC 25745] gi|122264977|sp|Q03D70|ADDB_PEDPA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116103709|gb|ABJ68852.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pediococcus pentosaceus ATCC 25745] Length = 1192 Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats. Identities = 110/1002 (10%), Positives = 278/1002 (27%), Gaps = 159/1002 (15%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 I S+ + + Y P V++ + L R+IL +++L Sbjct: 71 QILSISRLAWFFLRNSSIYQY---PRVTSSSSNMLLYRVILEHQDEL------------- 114 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-----EKYGMWWLLAADFLKIA 191 +L + + L + +A + + ++L + GM L I Sbjct: 115 TLFHNIDAQLGLVQKIATQLAEFKQGNVGPDELGRVAENIAENSDAGMDIKAKLHDLGII 174 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + E + L M + II+G + L+ + Sbjct: 175 YSAYEEEIQSR-FIDASDITHTLTDEL--SKMDLSGQSFIISGFSNFTAEEMSLIQALMK 231 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 ++ D + + K++ + + K Sbjct: 232 ANGNVVI----DLIMDKFP------------LYEKVSENSLFFENEKIIFKFNAWAHENK 275 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 ++ + L + + +K N V + +A++ E Sbjct: 276 VKSLEPVRLHRVRVNSDLLKLEKYWIESSEGQVGGSKQENNAC----VTIFQANSRYAEV 331 Query: 372 ISIAIALRMSLDENKK----KSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426 +A +R + ++ +++T + + + + I I + Sbjct: 332 EHVATLIRQKMAKDPSLKFSDFSVLTRHLSDYSTIIKPIFDQMELPIFYDLQIAMKDHPL 391 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL----SRAKNALELVALRGNKNS 482 ++ +L + + + L+K L + ++ + E L+ Sbjct: 392 LELINALFDIRAHHFRYEDVMRLLKTGLLFPETEDDPHGMDFFKSVHITENYVLKQGIYG 451 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + K R + + +++ + + + ++ L T T Sbjct: 452 DRWLQKKDWKYSRF-NDIDEEKQTDEEIEINQRINTVKNYVAETVVPFFNQLSTATTGVE 510 Query: 543 STCGNLSIS---DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + E R E+ +T + + ++ Sbjct: 511 AAKALYDFLIKNGIDQCLLAWRDQWIE-EGRLAKAAEPEQTWETFIQMLDEFVDILGDQP 569 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + ++ ++ +G T + + + ++++ + + G + V P+ Sbjct: 570 FDPDNFMGLLNAGFEGATYSQIPSTLDQILVSESGMVQMVDRKIVFIIGATDRVMPEQIQ 629 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----------ANGTRHLIYTRSLRENNI 708 N FL++ ++ ++ + + ++D +M G+ LI++ N+ Sbjct: 630 DNDFLNQDGKNQIDPFLDDDQFLRISNDRQMRQEPYLNYLTFMIGSDELIFSYPKSGNDG 689 Query: 709 -PTIASRWLQRLLVLGG------TDFFDNLKKRGQC----------------YLDWTRKL 745 S +++R+ G R + + R + Sbjct: 690 VELKISPYVERIGKHFGIIAQSLPSRPTTEPVRLDPPFIELFIGSNRSTLSHLIQYARAM 749 Query: 746 DYTTK---------------------------------QPHYKRPKPFPPLEAQPRTYSF 772 P +P+ L S Sbjct: 750 HEAKSEADPRWNLIYTILRQSTLGSLTDQLLSSLEYKNIPEKLKPEIVEGLYGDTIYASV 809 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---P 829 S++++ + Y+ + + LKL D G FH + +LIK +N Sbjct: 810 SKLEEFYRNEYSYFLKYGLKLQERETSD--LSPADTGQYFHAAMDKLIKMITTENLNFNE 867 Query: 830 EINHLMKQIIDSHFEKENLPPHIDI--------IWRHLFHKISHSFLE--HEEKIQSSIE 879 ++QI ++ D R + + +E ++ ++ + Sbjct: 868 VNQEQIEQIAKRLVQQMEQDQQFDQFNGTYRMGFLRKQLDRTVQAMVEAIFKQLARTRMR 927 Query: 880 KIFVNIPAKM-------------AIESIGIHLTGFADRIDLLK--SGFVD-ITDYKTG-D 922 I E I++ G DRID ++ I DYK+ Sbjct: 928 PIASEQLFGQIGSQSGLPALNFKVGEGKEINVRGKIDRIDKIEIGDKDYLGIVDYKSSNR 987 Query: 923 NPKKETAQKLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 A + Q+ + ++ ++++ Y Sbjct: 988 KFDFTDAYYGLAMQMLMYLDVVQRNKEKIDPATKAEISSALY 1029 >gi|257425015|ref|ZP_05601442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257272585|gb|EEV04708.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 55/2053] Length = 1043 Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIS 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|49483126|ref|YP_040350.1| hypothetical protein SAR0928 [Staphylococcus aureus subsp. aureus MRSA252] gi|257427681|ref|ZP_05604080.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257430316|ref|ZP_05606699.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397] gi|257433013|ref|ZP_05609373.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410] gi|257435917|ref|ZP_05611965.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus M876] gi|282903503|ref|ZP_06311394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C160] gi|282905281|ref|ZP_06313138.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260] gi|282910542|ref|ZP_06318346.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus WBG10049] gi|282913738|ref|ZP_06321527.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899] gi|282918664|ref|ZP_06326401.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C427] gi|282923654|ref|ZP_06331334.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C101] gi|283957704|ref|ZP_06375157.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus A017934/97] gi|293500780|ref|ZP_06666631.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 58-424] gi|293509731|ref|ZP_06668442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus M809] gi|293524318|ref|ZP_06671005.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015] gi|295427449|ref|ZP_06820084.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590191|ref|ZP_06948830.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus MN8] gi|81651447|sp|Q6GIC2|ADDB_STAAR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|49241255|emb|CAG39934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257275874|gb|EEV07347.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257279093|gb|EEV09704.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397] gi|257282428|gb|EEV12563.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410] gi|257285108|gb|EEV15227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus M876] gi|282314522|gb|EFB44912.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C101] gi|282317798|gb|EFB48170.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C427] gi|282322770|gb|EFB53092.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899] gi|282325934|gb|EFB56242.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus WBG10049] gi|282331688|gb|EFB61200.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260] gi|282596458|gb|EFC01419.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus C160] gi|283791155|gb|EFC29970.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus A017934/97] gi|290921281|gb|EFD98342.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015] gi|291095785|gb|EFE26046.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 58-424] gi|291467828|gb|EFF10343.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus M809] gi|295128837|gb|EFG58468.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576490|gb|EFH95205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus MN8] gi|312438671|gb|ADQ77742.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus TCH60] gi|315194498|gb|EFU24890.1| hypothetical protein CGSSa00_12265 [Staphylococcus aureus subsp. aureus CGS00] Length = 1158 Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIS 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|302670099|ref|YP_003830059.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus B316] gi|302394572|gb|ADL33477.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus B316] Length = 1179 Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats. Identities = 118/997 (11%), Positives = 275/997 (27%), Gaps = 128/997 (12%) Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + ++ + L L R+ I +KLP I +++ + + I Sbjct: 84 VLDDVGKSLILRRVADILGDKLPVIGPNMHKPGYI-------------DEVKSTISEFMQ 130 Query: 162 EEKKWEDLHALKNEKY-GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + L L+ + L++ + E + ++ ++ Sbjct: 131 YGITDDQLALLEEKSGKRGALHSKLGDLRLLYSEFHEYISNKYITTEETL--DILCKSVS 188 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + II G TG P R++ + IV +D + ++ Sbjct: 189 KSKLISNSVIIFDGFTGFTPIQYRVIKQLLKSATEVIVTVTIDAGEDVYANSYEEQELFM 248 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 ++ +Y L++ D N+ + + S D + Sbjct: 249 LSKKTIRDLEKLEYELSQEEMKSVGTLPDFATWRNMRDRSGDIRINSSPVRRLQDNKALS 308 Query: 341 NTD--ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALIT-A 394 + + + ++ + EA E + + ++ + A++ + Sbjct: 309 FLEENLFRYNAKKYEGVPQELEIFEASTPEAEVRQTMLKITDAVRSGKYAYRDIAIVCGS 368 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + + RFGI + I L LTS + + + ++ + Sbjct: 369 LDEYSELIAQTAGRFGIPVYIDQNTSLMLNPFIEYLTSAIGIAISGYKYEDVFHYMRSGM 428 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 F + + +RG D + +K + S + + Sbjct: 429 TAFSREDTDILDNYVRALG--IRGKSQWDDRFARRMPKKFMSGNKKTDDMTERELSIMEK 486 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + + + T K ++ + ++ + Sbjct: 487 LENMRVTITDELSPLFRVQKATAKEISDAILEVIDRNNSKARLDEYRDFFIQ-KGNLRKA 545 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 FE+ + +L ++I E E+ DI++ V + + + Sbjct: 546 KEFEQIYDKVIALLTQIGELIGTDVLTLQEYRDILSVGFGDIEVGTIPQDVDRIIVGDME 605 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLN-----LKTAEKYIGQAAH 686 +RL L G +G P N +S V + DL T + + Sbjct: 606 RTRLKEIKILFFLGTVDGAIPSNAGTGGIISDVDRQFLVDLGTGVELAPTPRQQMYIQRL 665 Query: 687 DFEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------- 735 M L + + + + +L L + + G Sbjct: 666 YLYMNLTKPTDKLYLSYAELDGEGKSRRPAYLVPKLKQMFPELIVQRPEDGSFDSQNAAY 725 Query: 736 -QCYLDWTRKLDYTTKQP------------------------HYKRPKPFPPLEAQPRTY 770 ++ + ++ + + + Sbjct: 726 MDSLMNAAELIRKYAIDVISDEEKSSLYALLKVLGENENTKSTLEKIEAAAFRHYENKPL 785 Query: 771 ---------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 S S ++ + YA + + L+L+ + D D +D G +FH + Sbjct: 786 AKMLALSLYGASLENSVSRLETFASCCYAHFIKYGLQLEERQ--EYDFDTSDLGNVFHEV 843 Query: 816 ITELIKK-------RINKNTPEINHLMKQIIDSHFEKENL----PPHIDIIWRHLFHKIS 864 + + + + E ++ + + ++ + H+I Sbjct: 844 LEKYTSEIMTRKIDWRELSDEESEQILGRALTECVDRYGDTILRSTSRNQHMIDRIHRIL 903 Query: 865 HSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIGI--------------HLTGFADRID 906 + + S F+ + + ++ I I L G DR+D Sbjct: 904 TRTVGILKYQISKGVFNPAFLEMDFREAGNLDEINITLSEDEKTRIIEKMRLRGRIDRVD 963 Query: 907 LLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLE---AAALKAGSFSQIDCRKVAN 959 L + + D+K+G + QL + AAA++ S A Sbjct: 964 LCEDDDHIYVKVMDFKSGKKKFNLAFLYHGLQLQLVMYMNVAAAVEKK-ISGGKEVVPAA 1022 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L Y + D + + K ++++E K L Sbjct: 1023 LLYYHVD-----DPMADGKGDMQPEDINEAIKKELRT 1054 >gi|253731574|ref|ZP_04865739.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724817|gb|EES93546.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1158 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 115/967 (11%), Positives = 271/967 (28%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFKHLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATTFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716 + T++ A M + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K ++ + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 LI +V Sbjct: 1026 LIGLVNA 1032 >gi|227550043|ref|ZP_03980092.1| helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077889|gb|EEI15852.1| helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 1018 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 135/1042 (12%), Positives = 278/1042 (26%), Gaps = 175/1042 (16%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--LPIIKSLGD 83 ++ L++ + + + +K + LR E + + P+++S+ Sbjct: 47 VSSFLIDTVVQAVESGADPRGILVISSSKESGARLRVELSDRLAASGFVIDEPMVRSVHS 106 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + L +S ++ + +L+ + Sbjct: 107 LAFALLRQRAGGDIRL---ISGAEQDAAIRQLLQGHAE--------DGRGTWPEQLRPAL 155 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + A+ L D + + + L L W A DFL + L Sbjct: 156 PMVGFARQLRDFLLRAVERQLTPDALRNLGKVHNRPIWSAAGDFLDEYQQV--MALNPAR 213 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 S +++R E E +++ + PA L+ + + +V G D Sbjct: 214 FVSASELVSSVLRGEIEQ----RWHTVVVDDAQHLAPAAGELVRRLVERASLGVV--GGD 267 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + L +V LG + Sbjct: 268 LGQSVFRFRGASP---------------------RFFANLAGLPHEVIDLGESRRAPIAQ 306 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + V + + +A +R + Sbjct: 307 AAVCDSA-------------------------------------AAQNSLVADTVRRAHL 329 Query: 384 ENK---KKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLHSSILTSLLNAIFK 439 E ++ A+I + V+ L G+ + + LS + L L A+ Sbjct: 330 EGGVAYREMAVIVRSASSIESVRRALLHAGVPVMVNPTDVVLSEQRIVAALILGLRALEG 389 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 L+ P+ R D + Sbjct: 390 ELSSAEWRELLLGPVGGTDPVTLRRLLRGLRRWEPGER--------------AEDTLRHL 435 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 +T + E + + V +L + + + ++ + + + Sbjct: 436 LRSTQPLPDFGVVLTERELSILNHVREVLDAGRAELAHGSIEDVLWAVWNATGLANHLLI 495 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + +L + + + GS + A I +++ Sbjct: 496 AALRGGATGSQADRDLDSVMALFDAAGDYVERRVGGSDV---AGFVAHISEQVLPTGVRD 552 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----- 674 + + +L + F T+I+ G+ E WP + DL Sbjct: 553 RRTATPDAVAVLTAHGAVRCEFHTVIVAGVQEMQWPSLAETGTMFGQEELVDLVDNDVDP 612 Query: 675 -----KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT--IASRWLQR--------- 718 + AE+ + + H + ++ E + SR+++ Sbjct: 613 AVPVSRKAERLAEEKRLFDVAVSRATHRVLVTAVDEPDGEEVIQPSRFVEDFCTTHDIAP 672 Query: 719 ---------------------LLVLGGTDFFDNLKK-----------RGQCYLDWTRKLD 746 + VL D L++ R Q R D Sbjct: 673 ACVTTASTSASPAAGAEEVTAVRVLARDDVIAELRRALNDSGIGEAGRRQAARQLARLAD 732 Query: 747 YTTKQPHYKR-----PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + A P S S I+ L+ P +R++ L Sbjct: 733 AGVPGADPEEWWTTTEAASHEALAVPERLSPSRIESLLACPMREVLQRMVGL-------D 785 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G++ H + + ++ +D P F Sbjct: 786 SSLHMVWGSMAHAYFEAVGRGVDETFARNAVLEARRSVDDA------PQWKVEREIAEFE 839 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 + + +S+ E++ V + I S G+ + G ADRI+ SG + I D KTG Sbjct: 840 AMLQRAHRWLQTSRSAFEQVAVEADIDVEI-SPGLRVVGRADRIERDGSGALHIVDLKTG 898 Query: 922 D-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 P K+ A+ +PQL AL G+ R A + D+ Sbjct: 899 SGVPSKDDAEA--NPQLEAYQLALSRGAIDGETVRSAAPGETPNTVGGAVLVYPKVDRDA 956 Query: 981 YSADELSEKSLKNLIEIVTLLQ 1002 + E + KS + L + L+ Sbjct: 957 AATREQTAKSEERLAQFAELIA 978 >gi|322516093|ref|ZP_08069030.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124] gi|322125508|gb|EFX96854.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124] Length = 1121 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 130/935 (13%), Positives = 267/935 (28%), Gaps = 134/935 (14%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + L + L D+ ++ DL L + + L Sbjct: 110 SHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDL 162 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMS 247 + L+ + + + HL K + +I G T L++ Sbjct: 163 VRIFSVAQDLLLAGDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVA 222 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + + ++ A + ++ L L + Sbjct: 223 LLNDKCHQIVIGTYASQKAYRANFVYGNVYQASVDF------------LRTLAQTYKVTP 270 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + V N + R + +S T D + T + + + E N+ Sbjct: 271 DYVTT-DKEGNPSFDRISRLLESRHDFSTVDEQLTAQDK----------QALQVWEVVNQ 319 Query: 368 REEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +EE +A ++R L + K+ L+ + + +V +F I +S+ Sbjct: 320 KEEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSH 379 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + LVK L E N D Sbjct: 380 PLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDL----------FEYYINFAD 429 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 I + D A ++ D +L L +++ + L+ + K S+ Sbjct: 430 IKGRHKFLSDFTANSRDKY------------DLDLLNGLRLQMVEPLDKLLNSRKQKGSS 477 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + V + + E+ K + L ++ + + Sbjct: 478 LLKKLVVFLEAVQVPSKMASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDD 537 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ I+ + + + + + + + G+ + +PK L Sbjct: 538 FLSILRSGMLACDYRTVPATIDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLL 597 Query: 665 SRVMQSDLNLKTAEKY--------IGQAAHDFEMAN---GTRHLIYTRSLRENNIPTIAS 713 S +S +N T E Q H M+ + L+ ++ N S Sbjct: 598 SDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDDMS 657 Query: 714 RWLQRLLVLGGTDFFDNL---------------------------------------KKR 734 +L+ LL LG Sbjct: 658 VYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWTV 717 Query: 735 GQCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 YL +D T + +P S S + N+ Y Sbjct: 718 AVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSASALMTFYNNQYLY 777 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843 + R +L L+ + PD GT H + ++ ++N + + F Sbjct: 778 FLRYVLGLEELESIH--PDARHHGTYLHRVFECVMGDSSSENFDDKLEKAIAQTNQEQPF 835 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 E + R + I+ S + ++ + + I +TG D Sbjct: 836 ELLYTEDQESRLSRQILEDIARSTASVLRDNAA-VKVEREEAKFDLLLA-NSIKITGIID 893 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANL 960 R+D L G + + DYK+G N QK + PQL AL+ ++D ++ Sbjct: 894 RVDRLTDGALGVVDYKSGKN--IFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGA 949 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+ ++ + ++ D+L+ ++ K L Sbjct: 950 MYLHMQDP------QLNLAQFGLDKLAAQAHKELT 978 >gi|55823611|ref|YP_142052.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus CNRZ1066] gi|81558976|sp|Q5LY79|ADDB_STRT1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|55739596|gb|AAV63237.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus CNRZ1066] Length = 1106 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%) Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + L + L D+ ++ DL L + + L Sbjct: 96 HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248 + L+ + + + HL + + +I G T L++ Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + + +V + + +S L L + + Sbjct: 209 LNDKCHQIVV----GTYTSQKAYKANFVYGNAYQASVDF--------LRTLAQTYKVIPD 256 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 V N + R + +S T D T+ ++ + + E N++ Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425 EE +A ++R L + K+ ++ + +F I +S+ Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + LVK L E +K D Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + + + K+ L+ ++ + + + Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S ++ E+ K + + ++ + ++ Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + I+ + + + + + + + G+ + +PK LS Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583 Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714 +S +N T E H M+ + L+ ++ N S Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643 Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735 +L+ LL LG Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703 Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 YL + +D T + E +P S + + N+ Y + Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 R +L+L+ + PD GT H + ++ +++ + D FE Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 R + I+ S + + + + + I +TG DR Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECE-EVKFDLLLA-NSIKITGIIDR 879 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +D L G + + DYKTG N QK + PQL AL+ ++D ++ Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+ + + + ++L+ ++ K L Sbjct: 936 YLHM------QVPQLNLSQIGLEKLAAQAHKELT 963 >gi|323443831|gb|EGB01443.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O46] Length = 1158 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 112/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D + L ++ + Sbjct: 225 SVTIILTTDGNQDQFS----------------------------LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ + ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + + ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDEEIVADSWLDAYQVI 732 Query: 759 PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789 L + S S + P+ YA Sbjct: 733 RDSDLLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|319744910|gb|EFV97243.1| exonuclease RexB [Streptococcus agalactiae ATCC 13813] Length = 1077 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 120/963 (12%), Positives = 259/963 (26%), Gaps = 138/963 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L L D+ ++T DL L + L Sbjct: 97 FEDGQLKAFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 ++ L E + + + L K I I+ G T L+ ++ Sbjct: 150 IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ I+ A + + S + + + + + Sbjct: 210 SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K + ++ + S D + + + E N+++ Sbjct: 264 SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306 Query: 370 EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + ++ D + + ++ I ++ Sbjct: 307 EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + L K + + A + + + + Sbjct: 367 VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + K L R+ T + + P +++ I L + Sbjct: 427 VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++S Q +E KT + + + K N E+ Sbjct: 475 LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + + + + + G+ + +PK +S Sbjct: 523 LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582 Query: 666 RVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASR 714 + + + F + L+ T N S Sbjct: 583 DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQELVLTIPQLLNESEDQMSP 642 Query: 715 WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741 +L L +G + K Q + Sbjct: 643 YLVELRNIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702 Query: 742 TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R L + P E P S S + N+ Y + Sbjct: 703 VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYF 762 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L+ PD GT H + L+K + ++ E + + F+ Sbjct: 763 LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + I+ + + S + ++ I+ I + G DR Sbjct: 821 SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960 ID L G + + DYK+ +K QK + PQL A + Q + Sbjct: 879 IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEIEQKPP--IFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ + + + K + D+L K+ + L L E+ F+++ + K ++ Sbjct: 935 MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988 Query: 1021 QSE 1023 SE Sbjct: 989 YSE 991 >gi|320546488|ref|ZP_08040803.1| exonuclease RexB [Streptococcus equinus ATCC 9812] gi|320448873|gb|EFW89601.1| exonuclease RexB [Streptococcus equinus ATCC 9812] Length = 1081 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 132/969 (13%), Positives = 275/969 (28%), Gaps = 147/969 (15%) Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + ++ L + K L D+ +++ DL+ L++E+ + L Sbjct: 95 SHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKSANMTVLDLNGLQSEE-------KQEDL 147 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMS 247 + L+ + + E+ HL K + ++I G T L+S Sbjct: 148 VKIFLAVNDILLANQYDTQSKIAFFAKQVESGHLDKALENVALVIDGFTRFSAEEEHLVS 207 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + A V+ G + T Q SL L L +K Sbjct: 208 LLEQKC--AQVIIGTYSSQKAY-------------KATFTAGNVYQASL-DFLRSLAMKF 251 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 S ++F D ++ A+ + N+ Sbjct: 252 -------QAQPYYVESSQASHEAFAKLSKLFEAKHDFTTAELTLTDDDKKHYAIWDVINQ 304 Query: 368 REEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 +EE +A A+R L E + ++ D + R ++ I +S Sbjct: 305 KEEVEHVAKAIRHKLYEGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKSESMSDH 364 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + SL + L+K L + Sbjct: 365 PLVHFIDSLERVKRYRFRTEDVINLLKTGLYGQFKQD----------------------- 401 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 DL I + ++ + KE + Q + PL+ + Sbjct: 402 --DLDLFEQYLIYADIKGQSKFAKEFTVNYKGKEHLAFMNQMREQIMVPLLMLFKAQKQL 459 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEH--------RKLPNLWFEEEGKTLSSLFSKIIETGS 596 S + +T L+ + L ++ ++ E+ +T + + ++ Sbjct: 460 G-----SSLLEKLMTFLRAISLPDNLEGMVATFPEIEQEKHEQVWRTFTGILNQFQTIFG 514 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 K + E + ++ + + + + + G+ + +PK Sbjct: 515 KEKLSLDECLSLVRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQSHFPK 574 Query: 657 NTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFEMA----NGTRHLIYTRSLRE 705 +S ++ +N T E ++ + F T L+ + Sbjct: 575 IAQNRSLISDEERAKVNENTDENQRFDVISRENIKKNHFAALSLFNAATEQLVLSLPQIV 634 Query: 706 NNIPTIASRWLQRLLVLG------GTDFFDNLKKRGQCYLDW------------------ 741 N S +L L G G + + Y Sbjct: 635 NESEDKESSYLAELASFGVPVVKKGRNRLSANLEDIGNYKALLSRVIEVNRLAIEEEREL 694 Query: 742 -----------TRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEI 775 R L + + P +P S S + Sbjct: 695 SKEEQTFWSVAVRYLRKKLETQGIELPLIKDNMQTKPVASEVIETRFPSDKPINLSSSAV 754 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 N+ Y + + +L L + PD + GT H + ++K N+ + Sbjct: 755 TTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRVFELVMKDESNQPFDTKLNQA 812 Query: 836 KQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 Q + F+ + I+ S K + I+ P ++ I + Sbjct: 813 IQKTNSEDEFKFVYEEDEESRYSLTVLEDIARST-ASILKNDAQIQVENEEEPFELMIAN 871 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQI 952 + + G DR+D L G + + DYK+ N + ++PQL AL+ Sbjct: 872 A-VRIRGIIDRVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKGRS- 929 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 + K+ Y+ + + + + D++ E K L L + E+ ++S+ Sbjct: 930 ESDKIFGAMYLHM-----QEPKVDLSSVATTDKILENLSKELRYR-GLFLDEEKGYLSNG 983 Query: 1013 RLSEKSNIQ 1021 ++ Sbjct: 984 NYHLNDSVY 992 >gi|253998949|ref|YP_003051012.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylovorus sp. SIP3-4] gi|253985628|gb|ACT50485.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylovorus sp. SIP3-4] Length = 925 Score = 173 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 95/636 (14%), Positives = 196/636 (30%), Gaps = 55/636 (8%) Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFMAI 446 + A + + V+ L D S G+PL+T +LL + + Sbjct: 271 RLAALLDEVLHPVTVRPGLVEADRAYDFSLGLPLNTQPVVHAALALLRIFWQQRIEQQDF 330 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + L+ +P E ++ L + ++ L + + Sbjct: 331 SVLLLNPYWSASLGEADARAQLDSRMRQWLPQTVSMMRLLRLIERLQEGETPLP------ 384 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 I Q + L + + S W L + Sbjct: 385 --------------------ISQLLQDLRAGWAVREAQPRRQLPSLWAAAFEQLLAALQW 424 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 R + + F+ + SL + N ++ + + L + +P++ Sbjct: 425 PGERSISSHEFQAQRAFSRSLQALARLDVFGDTLNGMQALQRLGELCREQIFQPEVSGDP 484 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685 + ++G LE D L + G+N+ VWP NP + +Q + A+ + A Sbjct: 485 PVQVMGMLEGAAAPLDALWVMGMNDHVWPPPPRPNPLIPATVQRAAGVPNADSAVQTAFA 544 Query: 686 --HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + ++++ +L++ AS L + V G + Q + Sbjct: 545 RILHQRLLLTAPLIVFSSALKDGERQLRASPILSDIPVFDGD------WAKAQTLAEQLA 598 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 ++ Q P E + + +K P Y + L + Sbjct: 599 HGEHAALQVLDDHMAPAV-GEGEHVSGGTGLLKAQAICPAWAYYQYRLGARELKAPVNGL 657 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHI 852 + +RGTL H ++ + R ++ + E L P Sbjct: 658 EPAERGTLVHGVLQHFWQGRDLAYLQALDTEELNAALAEAAQQALQDFAAERDETLSPAF 717 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + + K+ ++L E+ + + K+ IE + I L DRID L G Sbjct: 718 CQLEQERLIKLVSAWLAFEKTREVDFTVLDCERDTKVMIEGVEIRL--VLDRIDQLPDGR 775 Query: 913 VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQ 967 V I DYKTG P ++ +PQL + AA + + + + Sbjct: 776 VLIMDYKTGQKPDIRNWAESRITEPQLPVYAAFSLDDGEVAAVSFAMVRTEEHAFSGIAG 835 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + + + + + D + + ++ + Sbjct: 836 EEILPALMTLDDRKARDIFDAERFADWHTLLDHWRE 871 >gi|298694206|gb|ADI97428.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ED133] Length = 1158 Score = 173 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 115/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789 L + S S + P+ YA Sbjct: 733 RDSDLLNQGLDYLMSALTFDNETVKLGETLSKELYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|116628402|ref|YP_821021.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus LMD-9] gi|122267003|sp|Q03IZ7|ADDB_STRTD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116101679|gb|ABJ66825.1| DNA helicase/exodeoxyribonuclease V, subunit B [Streptococcus thermophilus LMD-9] Length = 1106 Score = 173 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 119/934 (12%), Positives = 257/934 (27%), Gaps = 134/934 (14%) Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + L + L D+ ++ DL L + + L Sbjct: 96 HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLNQ-------VEKQEDLV 148 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248 + L+ + + + HL + + +I G T L++ Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + + +V A + ++ L L + + Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 V N + R + +S T D T+ ++ + + E N++ Sbjct: 257 YVTT-DKEGNRSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425 EE +A ++R L + K+ ++ + +F I +S+ Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + LVK L E +K D Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + + + K+ L+ ++ + + + Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S ++ E+ K + + ++ + ++ Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + I+ + + + + + + + G+ + +PK LS Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583 Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714 +S +N T E H M+ + L+ ++ N S Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643 Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735 +L+ LL LG Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703 Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 YL + +D T + E +P S + + N+ Y + Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 R +L+L+ + PD GT H + ++ +++ + D FE Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 R + I+ S + ++ + + + I +TG DR Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAA-VKVEREEVKFDLLLA-NSIKITGIIDR 879 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +D L G + + DYKTG N QK + PQL AL+ ++D ++ Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+ + + + ++L+ ++ K L Sbjct: 936 YLHM------QVPQLNLAQIGLEKLAAQAHKELT 963 >gi|55821689|ref|YP_140131.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus LMG 18311] gi|81560166|sp|Q5M2T6|ADDB_STRT2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|55737674|gb|AAV61316.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus LMG 18311] Length = 1106 Score = 173 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%) Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + L + L D+ ++ DL L + + L Sbjct: 96 HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248 + L+ + + + HL + + +I G T L++ Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + + +V A + ++ L L + + Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 V N + R + +S T D T+ ++ + + E N++ Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425 EE +A ++R L + K+ ++ + +F I +S+ Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + LVK L E +K D Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + + + K+ L+ ++ + + + Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S ++ E+ K + + ++ + ++ Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLSVDDF 523 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + I+ + + + + + + + G+ + +PK LS Sbjct: 524 LSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583 Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714 +S +N T E H M+ + L+ ++ N S Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643 Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735 +L+ LL LG Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703 Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 YL + +D T + E +P S + + N+ Y + Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 R +L+L+ + PD GT H + ++ +++ + D FE Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 R + I+ S + + + + + I +TG DR Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAAVKVECE-EVKFDLLLA-NSIKITGIIDR 879 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +D L G + + DYKTG N QK + PQL AL+ ++D ++ Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+ + + + ++L+ ++ K L Sbjct: 936 YLHM------QVPQLNLSQIGLEKLAAQAHKELT 963 >gi|172056767|ref|YP_001813227.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15] gi|251764589|sp|B1YKM7|ADDB_EXIS2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|171989288|gb|ACB60210.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15] Length = 1143 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 116/1021 (11%), Positives = 271/1021 (26%), Gaps = 155/1021 (15%) Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELAR--- 114 L I+ ++ + P I + V ++ + ++ +P +S + R ++ L R Sbjct: 17 LIERVIDQLTEQP-LGPSIYFI---VPDQMSFEMERRIATDPRLSGLVRMEVMSLRRFAF 72 Query: 115 -LILIWRNKLPDIIKDLYPESPLSLPISPAN-----------AIWLAKNLADIIDIIETE 162 +I + N++ + + + L + A K L ++I + Sbjct: 73 HMIRDYGNQVIPFLDETGTQLLLRQVVEEAEEELKIFKRTKNMPGFYKGLDELIASFKRS 132 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + + L + + +TER S + E L Sbjct: 133 LVNPDMLRQISGA--SPERSPKLNDLALIYERFTER-----ISDKALHADDYFTTLIELL 185 Query: 223 MKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 K + + G +++ + + LD Sbjct: 186 PKADLSDVSVFVDGFYEFSLQEQQVLLRLMELTKDMHLSFTLDVE--------------- 230 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + Q +L++ + ++ + + M Sbjct: 231 DVYTKQSEFGVSQRCYMQLIEQMKERQIAHEDIY-----------YGQTVKFQSTGLRML 279 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADRN 397 +L P + + V + A N + E + AI L K A + Sbjct: 280 EQALLSPGYPPTDEEVTGVTVSAAVNRQVETEAAVRKAIQLVRHDGYRFKDIAFLVRHLE 339 Query: 398 LAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 ++ + I + + ++ ++L + ++ L+K L Sbjct: 340 PYADHLERAFQLYDIPYFLDQRESMVHHPIVELVHAVLEIVMTGYREESVFRLLKTELI- 398 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 P + A + LE L + R+A + + T + E Sbjct: 399 -PLPAEDPRLALDRLETFVLERGIKGSMWKKPWQ-LKRRLADEISLTDAELQEELELNEW 456 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 ++ V ++ + + T + L T Q Sbjct: 457 RQFLVEAIEPLEKRFKASKTMSEYTRALYRFLEEHHMTDRLTVWKQQALEVNELSQAR-E 515 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 ++ + + LF ++ ++ ++ ++ + + Sbjct: 516 HDQVYEAVLLLFEQLEAAAPEATLTTELFVQMVETGLESLRFSLVPPSLDQVIATDYVRG 575 Query: 637 RLLNFDTLILGGLN-------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 RL + L G N E + + + + + + + + ++ Sbjct: 576 RLQQVKVVFLLGANDGLIPLVEDQSKLLSEGDHDFLHDQGIPVGKASLDVFDDELYYLYQ 635 Query: 690 MANGTRH-LIYTRSL-RENNIPTIASRWLQRLLVLGGTDF-------------------- 727 L + +L E+ + ++++ D Sbjct: 636 GVTAPSESLHISYALVDEDGKALQPASIVKQIKHQLLQDRPVKTYFAEAGDHAPDDQLQF 695 Query: 728 --------------FDNLKKRGQCYLDWT----RKLDYTTKQPHYK----------RPKP 759 L++R W R L+ + + +P Sbjct: 696 VTSPERAAAAAAIELRRLQRRYPIQPSWFDVYNRLLENGRGRERMALFSNALFYQNQAEP 755 Query: 760 FPPLEAQP-----RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P A+ S S + Y +AR L+L + D G LFH Sbjct: 756 LPEDLARNLYGDTIKASVSRFETYNACSYKHFARYGLRLKERK--LYKFEAPDIGNLFHG 813 Query: 815 IITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKI 863 + +L ++ +++ + + + + L + + + Sbjct: 814 ALNDLSMNIKASGKRWRELDDQSCSNLAKEAVEKVTPEIQNAILMSSNRFGYIKKKLTDV 873 Query: 864 SHSFLEHE--EKIQSSIEKIFVNIPA--------KMAIESI-GIHLTGFADRIDLL--KS 910 + + +S E I + + I TG DR+D Sbjct: 874 VEQTAKMLVKQAERSEFEPDLFEISFGNAMFPPLRFTLPDGTEIEFTGRIDRVDQATIGD 933 Query: 911 G-FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQ 967 +V I DYK+ + Q+ L ++ K A Y +K Sbjct: 934 QLYVRIVDYKSSAKELDFAEIYYGLAIQMLLYLKTVVEQSEVLFNQQAKPAGALYFHVKN 993 Query: 968 K 968 Sbjct: 994 P 994 >gi|260577891|ref|ZP_05845822.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] gi|258603985|gb|EEW17231.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] Length = 1136 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 128/1082 (11%), Positives = 284/1082 (26%), Gaps = 150/1082 (13%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVVEEKFTADLLLSYNLNP 101 + + + P+K + +R+ + + ++S+ + + L P Sbjct: 97 SEIMFFAPSKESATAVRAALYQRMAGEGDYAASGTFVRSVHSWAFAFYRSVQTLRGQKQP 156 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 RL+ A + R L +D P ++ + + A A+ L D++ Sbjct: 157 ------RLITGAEHDMQIREILRGTEEDGNRYWPTNVVPALSYA-GFAQQLRDLLLRATE 209 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220 + L L E W A F + + +RL + + A + A + Sbjct: 210 RGLSAQQLQQLGVEHDRPMWEAAGRFQQEYQQV--QRLSRSESLNASELLHATLAAFEKP 267 Query: 221 ------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 + +++ + PA+ARL+ + G L D + Sbjct: 268 EGEQLVEQQREKVKLLLVDDAHNLDPASARLIESF--MVPGTRTLIAGDPDQCVFHFRGA 325 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 E + S + + S + LG + + RS Sbjct: 326 DEAFLDSYSQDPDHRVVLSASYRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGG 385 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSAL 391 T V + E E + I +R + E A+ Sbjct: 386 ST------------------GAETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAV 427 Query: 392 ITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 I RV+ L +G+ + + + L+ + +L A ++ + +++ Sbjct: 428 IVRGTGSIARVRRTLMAYGVPVKVDPTSVVLAEQPLARMLLLAAEASYRTLTVAEMHSVL 487 Query: 451 KH------PLAKFGFPEKYLSRAKNALELVA---LRGNKNSYDIMDLKSLVLDRIATQKN 501 + P+ ++A + D + T+ Sbjct: 488 EGSVGGADPVMVRRVHRAVALAIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELL 547 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-GNLSISDWTKLTVTC 560 N ++ ++ + + N T I TKL + Sbjct: 548 NHPGDPANQWITSHCGPREKEVIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHL 607 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + +L + E + ++ + + Sbjct: 608 RAQALKGGSLGAQADADLDAVMSLFDILGDFAERNPHAQME-SFVENLRAQKVPTGGRDQ 666 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 + ++ + IL + + + + G+ EG WP ++ DL + + Sbjct: 667 RGVRAGAVEILPAHAAAGRQWKVVAIAGVQEGEWPTGPTVGGLFGQLELVDLLDRGIDPS 726 Query: 679 -------KYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---- 725 I + F +A T + T + + SR++ + V Sbjct: 727 VPVARINDAIEEERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATA 786 Query: 726 ---------------------------------------DFFDNLKKRGQCYLDWTRKL- 745 D + + G R L Sbjct: 787 DEAEGAEEAETSVGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLA 846 Query: 746 ---------DYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 P + S S+++ + + Sbjct: 847 KMARAGVYGAAPEDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSE 906 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + G H I ++++ E +++I+ + P + Sbjct: 907 ------STEAMRVGIFIHAIAEQIVQ---GMELDEAQLAVREILPHVLD---GPAWKNTQ 954 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLK-S 910 + + + ++ + + + + + L+G AD + Sbjct: 955 TVERWEGGVNKLHGFIAGYRDKEFELETERTLRARVGQTPDGVEVTLSGRADLLATNPED 1014 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRLK 966 G + D+KTG + A PQLS L ++G +Q A L Y Sbjct: 1015 GLTKVIDFKTGKTAVTKNAAA-ESPQLSAYQFLLPLNERSGGSAQKYRPGGAALVY---- 1069 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + IT + +E L+EI ++L ++ Sbjct: 1070 PGTQTKTITERNQAELTEEQLSGVHDQLMEIA-----PVTAGPTYLATPNDGCRHCDFKT 1124 Query: 1027 LA 1028 + Sbjct: 1125 IC 1126 >gi|329733942|gb|EGG70264.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 21193] Length = 1158 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 113/967 (11%), Positives = 269/967 (27%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFKQLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + ++ + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMSERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716 + T++ A M + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 TQIQALFNQLEITNIPRYHEVAPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNKALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K + + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|323440878|gb|EGA98586.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O11] Length = 1158 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 115/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ + ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + + ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PF-----------------------------PPLEAQPRTYSFSEIKQLINDPYAVYARR 789 L + S S + P+ YA Sbjct: 733 RDSDLLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKYK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|68536699|ref|YP_251404.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264298|emb|CAI37786.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 1104 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 128/1082 (11%), Positives = 283/1082 (26%), Gaps = 150/1082 (13%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPI---IKSLGDVVEEKFTADLLLSYNLNP 101 + + + P+K + +R+ + + ++S+ + + L P Sbjct: 65 SEIMFFAPSKESATAVRAALYQRMAGEGDYAASGTFVRSVHSWAFAFYRSVQTLRGQKQP 124 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 RL+ A + R L +D P ++ + + A A+ L D++ Sbjct: 125 ------RLITGAEHDMQIREILRGTEEDGNRYWPTNVVPALSYA-GFAQQLRDLLLRATE 177 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220 + L L E W A F + + +RL + + A + A + Sbjct: 178 RGLSAQQLQQLGVEHDRPMWEAAGRFQQEYQQV--QRLSRSESLNASELLHATLAAFEKP 235 Query: 221 ------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 + +++ + PA+ARL+ + G L D + Sbjct: 236 EGEQLVEQQREKVKLLLVDDAHNLDPASARLIESF--MVPGTRTLIAGDPDQCVFHFRGA 293 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 E + S + + S + LG + + RS Sbjct: 294 DEAFLDSYSQDPDHRVVLSASHRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGG 353 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSAL 391 T V + E E + I +R + E A+ Sbjct: 354 ST------------------GAETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAV 395 Query: 392 ITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 I RV+ L +G+ + + + L+ +L A ++ + +++ Sbjct: 396 IVRGTGSIARVRRTLMAYGVPVKVDPTSVVLAEQPLVRMLLLAAEASYRPLTVAEMQSVL 455 Query: 451 KH------PLAKFGFPEKYLSRAKNALELVA---LRGNKNSYDIMDLKSLVLDRIATQKN 501 + P+ ++A + D + T+ Sbjct: 456 EGSVGGADPVMVRRVHRAVALAIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELL 515 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC-GNLSISDWTKLTVTC 560 N ++ ++ + + N T I TKL + Sbjct: 516 NHPEDPANQWITSHCGPREKEVIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHL 575 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + +L + E + ++ + + Sbjct: 576 RAQALKGGSLGAQADADLDAVMSLFDILGDFAERNPHAQME-SFVENLRAQKVPTGGRDQ 634 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 + ++ + IL + + + + G+ EG WP ++ DL + + Sbjct: 635 RGVRAGAVEILPAHAAAGRQWKVVAIAGVQEGEWPTGPTVGGLFGQLELVDLLDRGIDPS 694 Query: 679 -------KYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT---- 725 I + F +A T + T + + SR++ + V Sbjct: 695 VPVARINDAIEEERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATA 754 Query: 726 ---------------------------------------DFFDNLKKRGQCYLDWTRKL- 745 D + + G R L Sbjct: 755 DEAEGAEEAETSVGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLA 814 Query: 746 ---------DYTTKQPHYKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 P + S S+++ + + Sbjct: 815 KMARAGVYGAAPEDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSE 874 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + G H I ++++ E +++I+ + P + Sbjct: 875 ------STEAMRVGIFIHAIAEQIVQ---GMELDEAQLAVREILPHVLD---GPAWKNTQ 922 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLK-S 910 + + + ++ + + + + + L+G AD + Sbjct: 923 TVERWEGGVNKLHGFIAGYRDKEFELETERTLRARVGQTPDGVEVTLSGRADLLATNPED 982 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRLK 966 G + D+KTG + A PQLS L ++G +Q A L Y Sbjct: 983 GLTKVIDFKTGKTAVTKNAAA-ESPQLSAYQFLLPLNERSGGSAQKYRPGGAALVY---- 1037 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 + IT + +E L+EI ++L ++ Sbjct: 1038 PGTQTKTITERNQAELTEEQLSGVHDQLMEIA-----PVTAGPTYLATPNDGCRHCDFKT 1092 Query: 1027 LA 1028 + Sbjct: 1093 IC 1094 >gi|311739799|ref|ZP_07713633.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304872|gb|EFQ80941.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035] Length = 1035 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 118/1048 (11%), Positives = 266/1048 (25%), Gaps = 168/1048 (16%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 ++ R +P + + + P+K + LR E E + +++S+ + Sbjct: 53 HALDKARQTGADP---SGILVIAPSKESGARLRRELSERLEDYAAQTSMVRSVHSLAFAL 109 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 RL+ A + R L +D + P + + Sbjct: 110 LRTTTEEEL----------RLITGAEQDAVIRELLTGQAEDGHGSWPAEM-RPALEYVGF 158 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ L D + DL L E W A +FL+ + +L+ S Sbjct: 159 ARQLRDFLLRSIERGLGPGDLERLGAEHGRPMWSAAGEFLREYERV---QLLSRAHSYSA 215 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + + L + II+ + P +L+ +A P +V+ G D Sbjct: 216 AELVTAVLQRPQLLREHPFHTIIVDDAQLLDPTAGKLIREMA--PQANLVVVGGDADQSV 273 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + ++ + Sbjct: 274 FAFRGASSRFLRDFPADHDIELTEPHR--------------------------------- 300 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 +I + + A+ R + + R Sbjct: 301 ---------------TPSPACISIVDSDGRLRDVVANTVRRRHLEDGVPWRDIA------ 339 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++ + ++ + + L + L+ S + L A+ + + Sbjct: 340 -VIVRSTGDIGQMRRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRALEEDLSNSELEE 398 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 L+ P+ RG I L+ L+ + P + Sbjct: 399 LLTGPVGGADPVTLRRLIRGLRRWDSTTRG------IDSLRGLLYGEL---------PDF 443 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 +L+E + + + + L + + + S ++ Sbjct: 444 NGQLTEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGATG 503 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + +L + + + S I + + + + Sbjct: 504 SQADRDLDAMMALFDAAGDYVERRPDSSLRAF----LTHITEQELPTGVRDRRTAIPQAV 559 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 IL + +DT+I+ G EG WP + DL + Sbjct: 560 EILTAHGAVGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPVSHVAS 619 Query: 680 YIGQAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + + F +A + E + + SR++ G +++ + Sbjct: 620 RLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQAK 679 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPP----LEAQPRTYSFSEIKQLIN------------ 780 L T+ P S + Sbjct: 680 RALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNQESGEVE 739 Query: 781 -------------------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 P ++ R + + H + L + + ++ Sbjct: 740 RKQAARQLARLAAADIPGAHPEQWWSARSVAAEMPLHTSGSLSPSRVEALLNCPLKAVLG 799 Query: 822 KRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------------- 863 + + + ++ F +I Sbjct: 800 NVAEDPSTEEHLLRGTLAHAFFEAIGRGMDAEKAKLLVMEAFERIQDVPQWQLRFRLDEF 859 Query: 864 ---SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 E + + + E V IP + + S + + G+ DR+ G + D KT Sbjct: 860 STLLDRAREWARQSEVNQELAGVEIPVGVRV-SEEVRIGGYMDRLLRDGEGNYLVVDLKT 918 Query: 921 GDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL---FYIRLKQKFKIDCITN 976 G + P K+ + + QL AL G+F + + + I Sbjct: 919 GRSKPAKKEGEDHV--QLMTYQLALAHGAFDGHQVHDGEGMPRQGGVLVYPGATTKKIGE 976 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + + E E+ L +V ++ Sbjct: 977 IWQSDKSPEALEEFAALLPPLVEEMRGP 1004 >gi|15923956|ref|NP_371490.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15926555|ref|NP_374088.1| hypothetical protein SA0827 [Staphylococcus aureus subsp. aureus N315] gi|148267400|ref|YP_001246343.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp. aureus JH9] gi|150393453|ref|YP_001316128.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp. aureus JH1] gi|156979292|ref|YP_001441551.1| hypothetical protein SAHV_0961 [Staphylococcus aureus subsp. aureus Mu3] gi|253316127|ref|ZP_04839340.1| hypothetical protein SauraC_08282 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005756|ref|ZP_05144357.2| hypothetical protein SauraM_04785 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795299|ref|ZP_05644278.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781] gi|258406948|ref|ZP_05680101.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763] gi|258421916|ref|ZP_05684837.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719] gi|258441525|ref|ZP_05690885.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115] gi|258447224|ref|ZP_05695373.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300] gi|258449984|ref|ZP_05698082.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224] gi|258455497|ref|ZP_05703456.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937] gi|269202581|ref|YP_003281850.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98] gi|282893993|ref|ZP_06302224.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117] gi|282927189|ref|ZP_06334811.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102] gi|295405772|ref|ZP_06815581.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819] gi|296276178|ref|ZP_06858685.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus aureus subsp. aureus MR1] gi|297245363|ref|ZP_06929234.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796] gi|81705954|sp|Q7A6H5|ADDB_STAAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|81781870|sp|Q99VC4|ADDB_STAAM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764610|sp|A7X0I1|ADDB_STAA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764611|sp|A6U073|ADDB_STAA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764612|sp|A5IRE4|ADDB_STAA9 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|13700770|dbj|BAB42066.1| SA0827 [Staphylococcus aureus subsp. aureus N315] gi|14246735|dbj|BAB57128.1| similar to ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|147740469|gb|ABQ48767.1| DNA helicase/exodeoxyribonuclease V, subunit B [Staphylococcus aureus subsp. aureus JH9] gi|149945905|gb|ABR51841.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp. aureus JH1] gi|156721427|dbj|BAF77844.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789271|gb|EEV27611.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781] gi|257841487|gb|EEV65928.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763] gi|257842249|gb|EEV66677.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719] gi|257852315|gb|EEV76241.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115] gi|257853972|gb|EEV76926.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300] gi|257856904|gb|EEV79807.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224] gi|257862315|gb|EEV85084.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937] gi|262074871|gb|ACY10844.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98] gi|282590878|gb|EFB95953.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102] gi|282763479|gb|EFC03608.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117] gi|285816645|gb|ADC37132.1| ATP-dependent nuclease, subunit B [Staphylococcus aureus 04-02981] gi|294969207|gb|EFG45227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819] gi|297177666|gb|EFH36916.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796] gi|312829363|emb|CBX34205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130453|gb|EFT86440.1| hypothetical protein CGSSa03_03493 [Staphylococcus aureus subsp. aureus CGS03] gi|329728303|gb|EGG64742.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1157 Score = 172 bits (436), Expect = 3e-40, Method: Composition-based stats. Identities = 113/967 (11%), Positives = 273/967 (28%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716 + +L+ + + +A + + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K ++ + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|311111763|ref|YP_003982985.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931] gi|310943257|gb|ADP39551.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931] Length = 1172 Score = 172 bits (436), Expect = 3e-40, Method: Composition-based stats. Identities = 145/1169 (12%), Positives = 286/1169 (24%), Gaps = 210/1169 (17%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + +I A ++ F +P A + + PT+ +R E + Sbjct: 9 APGTGKTERVITAAVD------FLNAGGDP---ARLLVLTPTRAGATRVRDELARRIDRS 59 Query: 72 STILPI----IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 + P + + + L +S ++ + + ++ R + Sbjct: 60 MSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEILAGHREGKGAAV 119 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + + + + D D I EDL L W A Sbjct: 120 R------WPADLHEALGTRGFRQEIRDFFDRIAEYALTAEDLENLAQTLDRPAWHSVAQL 173 Query: 188 LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 + RL NA P L E + I+I + P+ Sbjct: 174 YTEYQQI--RRLRAPNAYDPAALIHEACAFLLANPEYLREERARFDLILIDDAQELSPSV 231 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST-------------NITSSNTTYS 289 RLM + G VL A+ + + + Sbjct: 232 YRLMRILVGREPGQ-VLATYTGDQREAVEAAFAPSARVLMTCCTETVVQGFRGARPDLAA 290 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR--------- 340 T PQ + L + + R VI+ P + Sbjct: 291 TLPQIFPELQREELKTSYCMNAPITQAWRNIARRLPVIANVPTPREPQAAPSKYEESALL 350 Query: 341 --NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395 + D + + V + ++EA +A L +SA+I Sbjct: 351 RLSDDGDLLDPRHSDELPEGVFGYLLGSPQDEANQVAQLLLEDYLYRGAAYARSAIIVRS 410 Query: 396 RNLARRVKLELTRFGIN-IDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKH- 452 R + L GI + +A +P+ L +L ++ L H Sbjct: 411 GTEVARFRRVLAASGIPTVTGAALVPVRDEPAVRPFLDALSLLVYARQQSADYLKLPDHN 470 Query: 453 -------------------PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 + EK ++ + R N S + L Sbjct: 471 EFDGSLTENISPEAVTEAGTRSADDEAEKLARQSLADVLAEENRTNPGSGAHNAITLLTS 530 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 Q R +E D +L + Sbjct: 531 RLGGASSMEVRRLRQQLRAAELRAGGHRCSDDLLLGALLNPQALPAQGIGAAVRRVARVL 590 Query: 554 TKLTVTCLQNVCLDEHRKLPNL------------------WFEEEGKTLSSLFSKIIETG 595 + E E + L ++ Sbjct: 591 AAGHKALSERGANAETVLWALWQASGLEKNWVTESAQTGPEAERAHRNLDAMIGLFEAAT 650 Query: 596 SCIKANAIEWIDII-----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + ++ + + +T+ + ++ + IL + ++ T+ + GL Sbjct: 651 RFVDQMPGSSAELFLDYIDAQDLPMDTLAARGKRYDAVEILTPALAAGRHWQTVYVCGLQ 710 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRS--- 702 +G WP T + L +D+ D A L +R+ Sbjct: 711 DGTWPNTTVRGSLLKAGELTDICDMGVAAAQQVRMSDRVRAVRHDELRMFSTAISRANER 770 Query: 703 ---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY------------ 747 ++ S + L+ T +++ R +L Sbjct: 771 LVVTAVSSTEDAPSEFFDILVPDARTAGITHVR-RPMTLRALVAELRRYAQAQDTDPTLA 829 Query: 748 ----------TTKQPHYKRPKPFP--------------------------PLEAQPRTYS 771 P+ + E S Sbjct: 830 NAAAAQLNRLAQAGVPGAAPEQWWGLLPLSTEQNAFTPHPHRDGLSTDSGDPEKLTVPVS 889 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S I+ + P + + + GTL H I E Sbjct: 890 PSRIETIHKSPLDWF------VSAARAEAQTDTSRSLGTLIHAIAEEY--------PDAD 935 Query: 832 NHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK 888 ++ ++ LP + R K+ + +I E + V + Sbjct: 936 YMTLRGQLEERLSTLALPDTWEGQQIRERAEKMVDKLAVYINEIMPGDHRELVGVEGSFR 995 Query: 889 MAIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALK 945 + + + ++G DR++ + G I D KTG P K + QL+ A++ Sbjct: 996 VLVPGDAVNAQISGRVDRLEKTEDGRYVIVDLKTGKTKPNKNQIAEHA--QLAAYQVAVE 1053 Query: 946 AGSFS-----------------------------QIDCRKVANLFYIRLKQKFKIDCITN 976 AG+ ++ RK ++L Sbjct: 1054 AGAGDAMSRDFGVEPDGLDIPAGLEHREAAPQRFEVFTRKSGGAALVQLGDGTAASSRNR 1113 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 +++ + D + L++ L G Sbjct: 1114 PQEQDALDPETGIWAVQLVQRAAELIAGA 1142 >gi|187736052|ref|YP_001878164.1| ATP-dependent nuclease subunit B-like protein [Akkermansia muciniphila ATCC BAA-835] gi|187426104|gb|ACD05383.1| ATP-dependent nuclease subunit B-like protein [Akkermansia muciniphila ATCC BAA-835] Length = 957 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 127/961 (13%), Positives = 268/961 (27%), Gaps = 187/961 (19%) Query: 9 FTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT 68 F ++ P R + LL+ + VPT+ + ++LR I+ Sbjct: 4 FFLSWDKPACRAVAERLLSLG------------NGFHRHLVLVPTRESGRQLREYLASIS 51 Query: 69 GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128 ++ P + + + + ELA +L + Sbjct: 52 RTQAIFAPQVIPADQFPRMEEKEETASAPE------------ELAGWLLALGKTPHRLYP 99 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 L+P + +P ++ + +A +L ++ + + D Sbjct: 100 RLFPRT---MPEDFSSMLEMAGSLQNLRHAMANQGVS---------CIMAHHACAGRD-- 145 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---------GPIIIAGSTGSI 239 + W + + L A + G II+A + Sbjct: 146 ----ERWKDMERLEGQCTQQLESWKLEDRTAMKAEAPPRLLNSLRETGGNIILACTAEVP 201 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P + +P IW E+ S Sbjct: 202 PPLRHALQHAER------------NGVPVQIWIHAPEEEAASFDS--------------- 234 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 G E + R + I+ + Sbjct: 235 -------------WGCPLPEEWSRRPI------------------------PIRDGQIRI 257 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A A E IA + + AL D ++ + L ++G + G Sbjct: 258 AANPARLAEETCRIIA----RTAEGGTPDIALGVCDPDMNVALDAALRQYGWGLHNPEGK 313 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 P + + +L +L A+ + + +L + L K A Sbjct: 314 PFAGSGVMDLLRNLRRALEEKGTARPVYSLARSSLLCAS------LGIKGQQGCCAALDK 367 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + + +L R+ +L + +++ L T Sbjct: 368 IQQKFLPETEEYLLSRLKEAYPGAFPSIQAILEWRNRMAEPGMLGERLMEWFPALATIYG 427 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + ++ ++ +CL + ++ S Sbjct: 428 PE---------TEAMEMFHSCLSGL-------------------------MRLQQRSTAF 453 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ + ++ + + V+ + + + L LG +E LIL GLNEG P+ Sbjct: 454 SSPETALLLLMKCLQPLRVRNRRKAHAALDSLGWMEVHFRPERNLILTGLNEGTVPEGGV 513 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRSLRENNIPTIASR 714 + F+ ++ L + + + + + +R I N P S Sbjct: 514 SDQFMPEELRETLGIDSFNRKKARDSFLLTALLHSREREGSLTILLSRTSSRNDPLTPSS 573 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLD-----------WTRKLDYTTKQPHYKRPKPFPPL 763 L R + L + + T P P Sbjct: 574 LLMRCPEAELPHRVERLFQEISDVPAPLPYQRGNWHLQPAEGWKTAADIGAMAPGYKNPW 633 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIK 821 + + +S S +K+ + P + R L ++ D + GT+ H+++ + Sbjct: 634 KEKGLAFSPSVLKRFLACPMRFWMREALHMNEEEFLPDKEDMAVNELGTMLHDVLECFCR 693 Query: 822 KRI----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF---HKISHSFLEHEEKI 874 + N + + +I++ F K+ P + + ++S ++H + + Sbjct: 694 EHAVLKDGMNAASFQNAITEILEQTFRKQYGPSPLMPLLLQKRSMEQRLSVYAVQHLQAL 753 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 Q I + G + DRID G + + DYKTG E +K +D Sbjct: 754 QEGWSCIAFEHQVE-NWILGGFPMKFRIDRIDRHADGHIRVIDYKTGAASSCE--KKHLD 810 Query: 935 P 935 P Sbjct: 811 P 811 >gi|87161934|ref|YP_493569.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194661|ref|YP_499457.1| exonuclease RexB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509166|ref|YP_001574825.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142112|ref|ZP_03566605.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452082|ref|ZP_05700098.1| exonuclease RexB [Staphylococcus aureus A5948] gi|262049317|ref|ZP_06022191.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30] gi|262052140|ref|ZP_06024348.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3] gi|282922246|ref|ZP_06329941.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765] gi|284023893|ref|ZP_06378291.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 132] gi|294847954|ref|ZP_06788701.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754] gi|304381480|ref|ZP_07364130.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|122539895|sp|Q2FZT6|ADDB_STAA8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|123486590|sp|Q2FIA9|ADDB_STAA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764614|sp|A8Z072|ADDB_STAAT RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|87127908|gb|ABD22422.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202219|gb|ABD30029.1| exonuclease RexB, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367975|gb|ABX28946.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860297|gb|EEV83129.1| exonuclease RexB [Staphylococcus aureus A5948] gi|259159959|gb|EEW44995.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3] gi|259162549|gb|EEW47117.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30] gi|269940468|emb|CBI48845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282593536|gb|EFB98530.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765] gi|294824754|gb|EFG41176.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754] gi|302750794|gb|ADL64971.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339843|gb|EFM05787.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315197319|gb|EFU27657.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|320141217|gb|EFW33064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus MRSA131] gi|320143274|gb|EFW35064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus MRSA177] gi|329313634|gb|AEB88047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus aureus subsp. aureus T0131] gi|329726228|gb|EGG62698.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus 21189] Length = 1158 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + + ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K ++ + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|283770032|ref|ZP_06342924.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus aureus subsp. aureus H19] gi|283460179|gb|EFC07269.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus aureus subsp. aureus H19] Length = 1158 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|21282577|ref|NP_645665.1| hypothetical protein MW0848 [Staphylococcus aureus subsp. aureus MW2] gi|297208399|ref|ZP_06924829.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912475|ref|ZP_07129918.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus TCH70] gi|81762666|sp|Q8NXF0|ADDB_STAAW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|21204015|dbj|BAB94713.1| MW0848 [Staphylococcus aureus subsp. aureus MW2] gi|296887138|gb|EFH26041.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886721|gb|EFK81923.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus TCH70] Length = 1158 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 114/967 (11%), Positives = 270/967 (27%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVFLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716 + T++ A M + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYIAMTRARQDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K ++ + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|268680530|ref|YP_003304961.1| hypothetical protein Sdel_1911 [Sulfurospirillum deleyianum DSM 6946] gi|268618561|gb|ACZ12926.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM 6946] Length = 780 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 82/522 (15%), Positives = 161/522 (30%), Gaps = 62/522 (11%) Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 L + ++ K + + + L + + SL S Sbjct: 300 FFQTLSALEKAMRQGEIEDTLR--VKRLKIDEEKLVTCKTVWHQKLAPQSAMDFIRSLLS 357 Query: 590 KIIETGSCIKANAIEWIDIITR-------------LIDGETVKPKIEKSSTLFILGTLES 636 + K + + L + + + ++G LE+ Sbjct: 358 EKEAQKGVFKEALFAFEHFLNHAPSLRFEQVIKLLLNRLSVLSEDDVRGGKITVMGVLET 417 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695 R + + +I+ N+ PK ++K+ FLS +++ L T + + Sbjct: 418 RGVAYKGVIVVDFNDEFVPKRSSKDLFLSSDVRAHAGLPTKRDRENLQRYFYHQLFSRAT 477 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + E + SR+L + + ++ R L Y Sbjct: 478 KVAIAYVKNET---AMPSRFLDEMGFDTQRMADEGNFAPLLWKINAPRTL--------YT 526 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + P + + S +++K L++ Y R I K D G + H + Sbjct: 527 QAFIDAPYDLKAAPLSATKLKTLLSCQRQFYFRYIAKFKEAKMPSNTIDEQSLGIVLHKV 586 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKE---NLPPHIDIIWRHLFHKISHSFLEHEE 872 + E + +N E HL +I + +KE ++ + +W F+ +E Sbjct: 587 LEE---AILTQNLLEEKHLFAKI-EELLKKESHNDVWGYFADVWLEKLRP----FICNEV 638 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQ 930 K ++ ++ G L G DRID + + + DYK+G P + + Sbjct: 639 KRFEDGFLVYK-KEFSHSVLYQGFVLEGQIDRIDRKED-RLYVIDYKSGKVPTTTEKNLE 696 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 +D QL + A +V +Y LK+ I+ + E+ Sbjct: 697 NTVDFQLLFYSLIAGALG-------EVHGAYYYDLKEGVLIE-----------EPFLEEK 738 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 L E + L + L K Y L E Sbjct: 739 KVLLEEKLRLFAKPMNGYA--LCDDIKHCRICPYVMLCGREE 778 Score = 53.8 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 56/208 (26%), Gaps = 28/208 (13%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 PT RAI+ F+E T+LP S+ + ++ + Sbjct: 4 VFPTSRAIRSFYDTFVETN----TLLPKAISIAEFEQKALLIPHRSLVD-------EDMR 52 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + L + + L + + + L + + E+ + L Sbjct: 53 VLLMQEASRFTRFEL-----------LHIDRDFFTFLKNSSYLFRFFEELAHEKVSMDAL 101 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229 + D L+ K++ L + + EA ++ Sbjct: 102 ---VIADTYAHYAEHLDVLQTLLKHYKALLNQQALYDRITLLELYTINEA-YVRSLGAVC 157 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAI 257 I + G L+ +A + Sbjct: 158 IHLEGF--LSHFEWELLEKIAAIIPLHV 183 >gi|332799907|ref|YP_004461406.1| hypothetical protein TepRe1_1971 [Tepidanaerobacter sp. Re1] gi|332697642|gb|AEE92099.1| hypothetical protein TepRe1_1971 [Tepidanaerobacter sp. Re1] Length = 822 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 80/533 (15%), Positives = 170/533 (31%), Gaps = 56/533 (10%) Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-------EEGKTLSSLFSK 590 + + + IS+W L+ E + + ++L + ++ Sbjct: 287 EEWAKDSSASKPISEWIADLENFLEVQGYPEKFCHIHDNNLAVVKRDIDAFQSLQGVLTE 346 Query: 591 IIETGSCIKANAIEWIDIITRL--IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + ET I A+ + D T L V + ++++ R L FD + + G Sbjct: 347 LNETDKMISKEAVSFTDFATVLDTHLQSCVYSYSSLKNGIWVIPPAMLRGLRFDKIYVPG 406 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNL-----KTAEKYIGQAAHDFEMANGTRHL-IYTRS 702 + EG +P++ + L +++ N T + + + F+ + ++ Sbjct: 407 MVEGEFPRDFRPDWLLKDKDRAEFNRKGYKFDTLDLLLERERESFDFLISSSQAGYFSYP 466 Query: 703 L-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + E+N + S +L+ L + + C + K Sbjct: 467 MILEDNTSLLMSIYLEELCQKSAATIENVRFESVYCGKKLENIIAQERGVI-TGNTKQRL 525 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 +S + + PY + R+L L + + + RGT+ H I+ K Sbjct: 526 KEHFCNTPFSTTALNMYGECPYKFFLARVLNLSPVEE-EDEYTAIARGTVIHKILEIFFK 584 Query: 822 KRINKNTPEINHL----MKQIIDSHFEKENLPPHIDIIWRHLFHKI-----SHSFLEHEE 872 + K + +K + D + NL K ++L Sbjct: 585 RHREKLDAAMLDEYTNDIKALADEVIKNYNLQDSFAHPLLLEIEKCGIITNIVNYLAWHI 644 Query: 873 KIQSSIEKIFVNI------PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 K F+ + + I L G DRID G + I DYK G P Sbjct: 645 KQMGDFVPAFIELGFGYKNDFSLHFAP-DIQLVGKIDRIDEDSKGRLVIFDYKVGSTPDI 703 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK------ 980 + + QL + A + + + VA +I +K+ + + D + Sbjct: 704 NKIEDGTNLQLPIYIMAAEQ-----LLKKTVAGGVFISIKKGAVDNILVKDDEDLPFISR 758 Query: 981 ---------YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + + E + V ++ + F+ + + K ++ + Sbjct: 759 RRKKGILSQQEWNHMMEAVRATIRTYVDDIREAK--FLLNPKRCPKVDVYGSF 809 >gi|91788135|ref|YP_549087.1| exonuclease-like protein [Polaromonas sp. JS666] gi|91697360|gb|ABE44189.1| RecB family exonuclease-like protein [Polaromonas sp. JS666] Length = 856 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 120/798 (15%), Positives = 226/798 (28%), Gaps = 73/798 (9%) Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 RL+ + A + + + + + + Sbjct: 126 RLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAGLDSPVLALEAAVGQIALAWAAASAY 185 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 R ++ ++ ++ + + + + +L Sbjct: 186 PSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPLPSLHA 245 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 A + +EA A + L + + ALI DR L RRV L GI + G LST Sbjct: 246 AMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETGWKLST 305 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 T ++ L LL A+ A+ +K+ G ++ A+ L LR ++ Sbjct: 306 TRAAASLMGLLRAMPWDASTDAVLDWLKN---APGVSPGEVTAAETELRKAGLRAWRDLP 362 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 ++A Q + + Sbjct: 363 ATPQPAFAATQQLALQVDALR-------------------------------------KA 385 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 ++ W + LQ+ + ++ N + + L E S Sbjct: 386 LGRTRPLASWLRDLRAALQSAGQWDALEIDNA-GQTVLEVLRLHEGAEAEFDSAPTMALA 444 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + + ++G P+ + + IL + ++L G +E P + Sbjct: 445 SFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGRPMQAVVLPGCDEIRLPVSPEPAGL 504 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + + L L + + + H+ E I S ++Q LL+ Sbjct: 505 WTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDLLWRTSEAGEHLIPSGFVQELLLAQ 564 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 L RP P S S + L PY Sbjct: 565 AGHGDSPALATDSRRL-------RPVAIQPTPRPMPTGE-ALPVTRLSASAYEDLRRCPY 616 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI---ID 840 +A R L+L + D+ D G H+++ + TPE++ I + Sbjct: 617 RFFALRQLRLQESGELDSELDKRDFGNWLHSVLRYFHEALKAAPTPELSAREAMINLAAE 676 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 + L + + ++ ++ +L ++ + A+ + + L G Sbjct: 677 RVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEE-AEAEREMPLGKLQLIG 735 Query: 901 FADRIDLLKSGFVDITDYKTG-DNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVA 958 DRID G + DYKT E + D QL+ AA + Sbjct: 736 KLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAALMHD---------DTL 786 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE-K 1017 Y+ L +K D L E L ++ I L E K Sbjct: 787 AAAYVNLGEKEATRTYAQPGIVGLRDALIESILTDMDRIAR--------GTPLPALGEGK 838 Query: 1018 SNIQSEYDHLARVAEWRE 1035 + L R W E Sbjct: 839 ACEYCAARGLCRKDFWNE 856 >gi|57651658|ref|YP_185839.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL] gi|151221049|ref|YP_001331871.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman] gi|81694860|sp|Q5HHB8|ADDB_STAAC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764613|sp|A6QFH7|ADDB_STAAE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|57285844|gb|AAW37938.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL] gi|150373849|dbj|BAF67109.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman] Length = 1158 Score = 172 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 271/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKGHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + + ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K ++ + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|91776105|ref|YP_545861.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus flagellatus KT] gi|91710092|gb|ABE50020.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus flagellatus KT] Length = 940 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 124/873 (14%), Positives = 237/873 (27%), Gaps = 96/873 (10%) Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 WL A + + + V S ++ E L G + + Sbjct: 63 WLDALFEAALLTGELDAQEVPQGVLSSAQERMLWETVIKEVLAAEVAGDLFDIKGLACMA 122 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 A + LP D + + + + L Sbjct: 123 QEANQLLLEWR-------LPAPDAGYSEETRQFLAWRREFVARCRQSGWMEAARYFDWQL 175 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D L V RL M L ++ + + Sbjct: 176 DML---ARGVGRLPGSIAFAGFDRMTPQMVRLWEILQQRHVD--VQRHDTALAEAGGAQR 230 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL------TRFGIN-- 412 L+ AD + E ++A A R + ++ + R L + Sbjct: 231 LLLADQQAECRAAVAWAKRQLAEHPGASIGIVVPELAKLRGTLARLLDDALHPSWVRPAM 290 Query: 413 ------IDISAGIPLSTTLHSSILTSLLNAI-----FKLNDFMAIATLVKHPLAKFGFPE 461 D S G PL +LL + + L++ P E Sbjct: 291 VEAPRQYDFSLGQPLHREPVVHTALALLQFFSQWRRQDKIEQQDFSHLLQQPYWSHAVTE 350 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 +A + M + LV + Sbjct: 351 ADARAQLDARM------RERLPLSMSMSRLVRFIRREAGSEKAPLV------------LA 392 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L HI + L G S W + L + ++ + + + Sbjct: 393 GLQAHISDALAIL-------QEQHGQQLPSVWADVMQRTLDALEWPGRQRSLSSFEFQAI 445 Query: 582 KTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 K + + + + + L+ + +P+ E L ++G LES Sbjct: 446 KAFDEVLQALASLDVLQQALPFSQALARLRELVQEKIHQPEAEGEVRLQVMGMLESVSQP 505 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---KYIGQAAHDFEMANGTRHL 697 L + G+N+ VWP NP L MQ + A+ + + + + + Sbjct: 506 LHGLWVMGMNDYVWPPPPRPNPLLPAAMQRQYGVPNADSAVQAAFAQVVHQRLLHSAQQV 565 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 I++ +L++ S LQ + + L Sbjct: 566 IFSSALKDGERELRPSPLLQAIP-------LADAMPELSLSLAQALAERDGKPLQWLDDH 618 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + P E + + +K P Y + L + D RGTL H ++ Sbjct: 619 QAPPVEEGEHISGGTGLLKAQAVCPAWAYFQYRLHARALKAPVNGLDAAGRGTLVHLVLE 678 Query: 818 ELIKKRINKNTPEINH-LMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHS 866 + R + ++ ++Q + + E L + ++ Sbjct: 679 RFWRGRGLHDLQAMDEMQLEQALGEAVQDGLSIYADTCGEVLSEAFVALETLRLTRLLKG 738 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 +L E + + K+ IE + I L DRID L+ G + DYKTG P Sbjct: 739 WLAFERMREQPFTVLASEQQQKVLIEGVEITL--IIDRIDQLEDGSRIVIDYKTGRKPDT 796 Query: 927 --ETAQKLIDPQLSLEAAAL--------------KAGSFSQIDCRKVANLFYIRLKQKFK 970 ++ +PQL + AA + S K+ + L Sbjct: 797 RNWAQSRITEPQLPVYAAFVLSSLDPADTAGSQGAEISAIAFAMVKLEEHGFAGLANGNV 856 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + + K + + SE+ + ++ ++ Sbjct: 857 LPAMPVLDDKKTREVFSEEMFPDWHSVLAHWRS 889 >gi|168185693|ref|ZP_02620328.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str. Eklund] gi|169296371|gb|EDS78504.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str. Eklund] Length = 1135 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 117/1012 (11%), Positives = 270/1012 (26%), Gaps = 160/1012 (15%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + S + + F ++ L +++ +L+ + ++ +++L Sbjct: 63 KVTSFERIAYDVFNEVGGATHKL---INSSGKLMLIFNIVNKLKDEL------------- 106 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYW 195 + + AN N++DII ++ + +L +L + + + + + + Sbjct: 107 KIFATAANQEGFVNNISDIITELKRYDVTPSELRVSLNLIEEDEFLKDKINDISYIFEQF 166 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L N L + + + + + P ++ + Sbjct: 167 QESL-HKNYIDSEDELTLLYKKM-DTSKMFDDAEVWVDEFSSFTPQQYKIFEKLTKKAKQ 224 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + +D + + L K+L+ I + L Sbjct: 225 VSLTLCMDYYKAIDGTDVFAPTKKTEQK------------LIKILEENGITIDKPIIL-- 270 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + F + + + D+ +I A N E +IA Sbjct: 271 --------NNNHINRFKDSSELKYLEENYFKYPYKPYSESTEDIKIIRALNPYSEVENIA 322 Query: 376 IALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431 + + A+IT D ++ + I I + ++T Sbjct: 323 KEIAKISMKNSIRYRDIAVITRDLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLIT 382 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 S++ K + A+ +K L+ E L + R +++ Sbjct: 383 SVIEIFNKSWSYEAMFRYLKTGLSNISKEEVDLLENYVLAYGIRGRKKWQYAWEYGNENI 442 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + + + + A + + + S N +I Sbjct: 443 LEQVNEIRIKVSEPLIKFASKLKGKSK-ADEICSAVYNFLC----------SIGVNETIE 491 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 W E + + + + L +++E + +++ I++ Sbjct: 492 KWVHKFKN--------EGNQALAKEYSQIWNMVIELLDQVVEVFKEEELQLKDFVKILSL 543 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + + + R + L + G+N+G++P + LS + Sbjct: 544 GFKDYKMGLIPPSLDQVLVSDVERVRTHDIKLLYIIGVNDGIFPAVSKDEGILSDSDRGS 603 Query: 672 L---NLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRSLRE 705 L ++ AE + + +I TR Sbjct: 604 LKKMGIEIAEDTKSKAFEEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVTRFKSL 663 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 S + + + R+ D K + E Sbjct: 664 FPKIAEESDNITMDSEEENIELISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSEN 723 Query: 766 QPRT---------------------------------YSFSEIKQLINDPYAVYARRILK 792 + S +++ P+ Y + LK Sbjct: 724 PKWKETVDTVFSAISYTNAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLK 783 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842 F D GT HN+I E + +K + + Sbjct: 784 AKERKIF--ALTPPDLGTFMHNVIDEFSETVDKSGIKWYEIEDKWCKDTVSEIVDRKAEE 841 Query: 843 FEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK-------MAIE 892 + ++ + E +S + I + + I+ Sbjct: 842 SAGGIFTSSARYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYPPIEIQ 901 Query: 893 ---SIGIHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA-AA 943 + L G DR+D L K + I DYK+G + + QL A Sbjct: 902 LSSGEKVKLIGRIDRVDKLDMEKKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLDAI 960 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 L + + Y+++ D I K+ S +E+ ++ +K L Sbjct: 961 LTNEELKDREEALPGGVLYLKID-----DPIIKGKRNLSEEEIQDEIMKALK 1007 >gi|293189191|ref|ZP_06607915.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] gi|292821863|gb|EFF80798.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] Length = 1078 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 117/1094 (10%), Positives = 284/1094 (25%), Gaps = 145/1094 (13%) Query: 19 REMIPALLNGTLVENFRYD-PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-TILP 76 R ++ A +G ++ + LA V + A Q + + ++ + P Sbjct: 43 RAVVDAACSGDVIARGAPSSGRSTCALA-----VFEEAAAQGRSALILAPDRTRADVLTP 97 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL-LELARLILIWRNK--LPDIIKDLYPE 133 ++LG +Y + + + LE L+ L + ++ + Sbjct: 98 RAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVTGAAQDQMLAEALESVDAP 157 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 P + L +++ L W A + + Sbjct: 158 WPEDIGPQMRAMPAFRGELRNLVARAGEAGMDASSLSEAGARFGRPEWQGAGAIVAALEE 217 Query: 194 YWTERLVELN--ASSPVGYQIALMRAEAEHLMKGT----------KGPIIIAGSTGSIPA 241 Q A +I+ P+ Sbjct: 218 GPERSPEYPRTLRVDLSRIQALAADLIAAWEQDAPKRGVQAPCPVPDVVIVDDLQDCTPS 277 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T RL+ + GA ++ D + A + +L Sbjct: 278 TLRLLRACRDA--GARIVAFSDSDVAVAGYRGGEPHLD-----------------RRLAS 318 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VA 360 L ++ ++ ++ ++S + + ++ + + Sbjct: 319 ALGVEIAELGQVYDMS-------RAVRELARQACARIAQSGSPARREAGVADDAPKGALV 371 Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417 + IA ALR + +I ++ L R G+ + Sbjct: 372 THLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVAETSRYLARGGVPVAGGG 431 Query: 418 G-IPLSTTLHSSILTSLLNAIFKLNDFM-AIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 +T + +L L+ +D A + L L + Sbjct: 432 RAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSPLVRADALAIHRLLRRLN 491 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + + + + A ++ +E+ + + + Sbjct: 492 AARAQAAEEAGGESAPIPLTAADLVSDPQTWRPAIEQAEQAGGKRARAAAMLARPLETAA 551 Query: 536 TYKTNK-----NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 S+ + + + + + L + Sbjct: 552 RLWELGMSGSVRPQERLWSLWEASGVASEWRSRAIASDDSSGWYDDQLDAVVALLRVADV 611 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + A +++ + +T+ + + +L ++ ++ ++L GL Sbjct: 612 WEQRNPAGSAVG-FASELLAGSVPIDTISRVGVRPGGVEVLTPAQAMGRHWQVVVLAGLQ 670 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNL-----------------KTAEKYIGQAAHDFEMANG 693 +G WP ++ L + +D+ + A + + + +A Sbjct: 671 DGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREELIDSTRAARRAVLDDEYRLFVAAV 730 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------CYLDW 741 TR + + S + + L GT +++ Sbjct: 731 TRSRSIVHAGAVRSEDAAPSVFFDLVAYLAGTHRENDIVPVDPVEAPLSLSGHIADLRAR 790 Query: 742 TRKLDYTT-----------------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 D + S S+ ++ Sbjct: 791 AANSDEPADAQLAATLLALMAREGIASAQPHRWLGAGGTPTSAQDYRGQIVLSPSQFERA 850 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + P + I GTL H + E + T + ++++ Sbjct: 851 LACPLRWFLTTIGADAPSNA------AASLGTLVHAVAEEHPHGTPEELTEALEARIEEL 904 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 ++D + + + + + V + ++ E G+ + Sbjct: 905 G----------YNLDTWAGRVADRHAREIVNNLASYVVG-VPGEVTVEQTVSAEVEGVTI 953 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G DR++ + G V +TD KTG + + A +PQL+ A+ A ++ ++A Sbjct: 954 RGRMDRLEQVDEG-VRVTDLKTGKSGYTK-ASVAENPQLAAYQMAMLASG-EKVAGARIA 1010 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 L + + Y L + L+ E V + + R S++ Sbjct: 1011 LLG-------------GSKPQIYDQPALQGEELERWRESVREVALSARGPYFEARPSQEV 1057 Query: 1019 NIQSEYDHLARVAE 1032 +D L E Sbjct: 1058 CRYCSFDRLCPARE 1071 >gi|258435313|ref|ZP_05689052.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299] gi|257848974|gb|EEV72957.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299] Length = 1157 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 113/967 (11%), Positives = 273/967 (28%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716 + +L+ + + +A + + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K ++ + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDENKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|22537036|ref|NP_687887.1| exonuclease RexB [Streptococcus agalactiae 2603V/R] gi|76787095|ref|YP_329618.1| exonuclease RexB [Streptococcus agalactiae A909] gi|77406402|ref|ZP_00783462.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|81454476|sp|Q8E062|ADDB_STRA5 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|123601918|sp|Q3K1I5|ADDB_STRA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|22533893|gb|AAM99759.1|AE014231_17 exonuclease RexB [Streptococcus agalactiae 2603V/R] gi|76562152|gb|ABA44736.1| exonuclease RexB [Streptococcus agalactiae A909] gi|77174993|gb|EAO77802.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1077 Score = 171 bits (433), Expect = 6e-40, Method: Composition-based stats. Identities = 119/963 (12%), Positives = 260/963 (26%), Gaps = 138/963 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++T +L L + L Sbjct: 97 FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILELKYL-------HSPEKFEDLLA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 ++ L E + + + L K I I+ G T L+ ++ Sbjct: 150 IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ I+ A + + S + + + + + Sbjct: 210 SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K + ++ + S D + + + E N+++ Sbjct: 264 SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306 Query: 370 EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + ++ D + + ++ I ++ Sbjct: 307 EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + L K + + A + + + + Sbjct: 367 VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + K L R+ T + + P +++ I L + Sbjct: 427 VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++S Q +E KT + + + K N E+ Sbjct: 475 LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + + + + + G+ + +PK +S Sbjct: 523 LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582 Query: 666 RVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASR 714 + + + F + L+ T N S Sbjct: 583 DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQELVLTIPQLLNESEDQMSP 642 Query: 715 WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741 +L L +G + K Q + Sbjct: 643 YLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702 Query: 742 TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R L + P E P S S + N+ Y + Sbjct: 703 VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L+ PD GT H + L+K + ++ E + + F+ Sbjct: 763 LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + I+ + + S + ++ I+ I + G DR Sbjct: 821 SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960 ID L G + + DYK+ +K QK + PQL A + Q + Sbjct: 879 IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ + + + K + D+L K+ + L L E+ F+++ + K ++ Sbjct: 935 MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988 Query: 1021 QSE 1023 SE Sbjct: 989 YSE 991 >gi|82750583|ref|YP_416324.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122] gi|123548858|sp|Q2YWU2|ADDB_STAAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|82656114|emb|CAI80523.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122] Length = 1158 Score = 171 bits (433), Expect = 6e-40, Method: Composition-based stats. Identities = 116/966 (12%), Positives = 272/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKCADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R +S+ + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFKQSYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ + ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNGY-HEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVVIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L NL + + W + Sbjct: 673 QIQSLFNQLEITNLPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|154509555|ref|ZP_02045197.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC 17982] gi|153799189|gb|EDN81609.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC 17982] Length = 1078 Score = 171 bits (433), Expect = 6e-40, Method: Composition-based stats. Identities = 118/1094 (10%), Positives = 283/1094 (25%), Gaps = 145/1094 (13%) Query: 19 REMIPALLNGTLVENFRYD-PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS-TILP 76 R ++ A +G ++ + LA V + A Q + + ++ + P Sbjct: 43 RAVVDAARSGDVIARGAPSSGRSTCALA-----VFEEAAAQGRSALILAPDRTRADVLTP 97 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL-LELARLILIWRNK--LPDIIKDLYPE 133 ++LG +Y + + + LE L+ L + ++ + Sbjct: 98 RAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVTGAAQDQMLAEALESVDAP 157 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 P + L +++ L W A + + Sbjct: 158 WPEDIGPQMRAMPAFRGELRNLVARAGEAGMDASSLSEAGARFGRPEWQGAGAIIAALEE 217 Query: 194 YWTERLVELN--ASSPVGYQIALMRAEAEHLMKGT----------KGPIIIAGSTGSIPA 241 Q +I+ P+ Sbjct: 218 GHERSPEYPRTLRVDLSRIQALAADLIDAWEQDAPKRGVQAPCPVPDVVIVDDLQDCTPS 277 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 T RL+ GA ++ D + A + +L Sbjct: 278 TLRLLRACRGA--GARIVAFSDSDVAVAGYRGGEPHLD-----------------RRLAS 318 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VA 360 L ++ ++ ++ ++S + + ++ + + Sbjct: 319 ALGVEIAELGQVYDMS-------RAVRELARQACARIAQSGSPARREAGVADDAPEGALV 371 Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISA 417 + IA ALR + +I ++ L R G+ + Sbjct: 372 THLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVAETSRYLARGGVPVAGGG 431 Query: 418 G-IPLSTTLHSSILTSLLNAIFKLNDFM-AIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 +T + +L L+ +D A + L L + Sbjct: 432 RAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSPLVRADALAIHRLLRRLN 491 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + + + + A ++ +E+ + + + Sbjct: 492 AARAQAAEEAGGESAPIPLTAADLVSDPQTWRPFIEQAEQAGGKRARAATMLARPLETAA 551 Query: 536 TYKTNK-----NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 S+ + + + + + L + Sbjct: 552 RLWELGMSGSVRPQERLWSLWEASGVAGEWRSRAIASDDSSGWYDDQLDAVVALLRVADV 611 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + A +++ + +T+ + + +L ++ ++ ++L GL Sbjct: 612 WEQRNPAGSAVG-FASELLAGSVPIDTISRVGVRPGGVEVLTPAQAMGRHWQVVVLAGLQ 670 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNL-----------------KTAEKYIGQAAHDFEMANG 693 +G WP ++ L + +D+ + A + + + +A Sbjct: 671 DGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREELIDSTRAARRAVLDDEYRLFVAAV 730 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------CYLDW 741 TR + + S + + L GT +++ Sbjct: 731 TRSRSIVHAGAVRSEDAAPSVFFDLVAYLAGTHRENDIVPVDPVEAPLSLSGHIADLRAR 790 Query: 742 TRKLDYTT-----------------------KQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 D + S S+ ++ Sbjct: 791 AANSDEPADAQLAATLLALMAREGIASAQPHRWLGAGGTPTSAQDYRGQIVLSPSQFERA 850 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + P + I GTL H + E + T + ++++ Sbjct: 851 LACPLRWFLTTIGADAPSNA------AASLGTLVHAVAEEHPHGTPEELTEALEARIEEL 904 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 NL + +I ++ + V + ++ E G+ + Sbjct: 905 G------YNLDTWAGRVSDRHAREIVNNLASYVV-----GVPGEVTVEQTVSSEVEGVTI 953 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G DR++ + G V +TD KTG + + A +PQL+ A+ A ++ ++A Sbjct: 954 RGRMDRLEQVDEG-VRVTDLKTGKSGYTK-ASVAENPQLAAYQMAMLASG-EKVAGARIA 1010 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 L + + Y L + L+ E V + + R S+++ Sbjct: 1011 LLG-------------GSKPQIYDQPALQGEELERWRESVREVALSARGPYFEARPSQEA 1057 Query: 1019 NIQSEYDHLARVAE 1032 +D L E Sbjct: 1058 CRYCSFDRLCPARE 1071 >gi|282916217|ref|ZP_06323979.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus D139] gi|282319657|gb|EFB50005.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus D139] Length = 1158 Score = 171 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 114/966 (11%), Positives = 272/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R ++ + + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDNKQHVYLVGMNDGTMPQLVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|251782154|ref|YP_002996456.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390783|dbj|BAH81242.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1074 Score = 171 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 129/989 (13%), Positives = 266/989 (26%), Gaps = 141/989 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P + + K L D+ ++T Sbjct: 75 SESKQALDETALAMIFYRVLMQLTPEDLP-----VYGRLKDDPAFIKQLIDLYQELKTAN 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 +L L + L E + + + E L Sbjct: 130 LSVYELTELDTP-------GKQEDLIRIISLAEELMTQQDYHQDSALMSFAKTIETGQLD 182 Query: 224 KGTKGPI-IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + + +I G + L+S + N ++ + + + + Sbjct: 183 EQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPF---IKGNIYEA 239 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 S QY + + V + R + ++ D + Sbjct: 240 SIQFLQGIAEQYKTKPI----------YSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLE 289 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADRNLA 399 + + D+ L ++ ++EE +A A+R L E + L+ Sbjct: 290 EKDK----------EDIYLWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLLGDVDAYQ 339 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 ++ +F I + P++ + SL + I L+K L Sbjct: 340 LQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFA 399 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 DL ++ Sbjct: 400 D-------------------------SDLDRFEEYLQFADIKGFTKFSRPFTINSSRHYP 434 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT--VTCLQNVCLDEHRKLPNLWF 577 LL + + L ++ +L + V +N+ +L Sbjct: 435 LELLNEVREAVFSSLQALFKSQKQLGTSL-LDKLMTFFKDVQLAENMKSLGQNELEIEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE KT + + + + K + + +I + + + I + Sbjct: 494 EEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG------------QAA 685 + + GL + +PK + LS ++ +N T Q A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTA 613 Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 LSLLNA-ATQELVLSVPAVVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYK 672 Query: 726 ------------DFFDNLKKRG-----QCYLDWTRKL-----------DYTTKQPHYKRP 757 ++ ++ R+L D+ +P Sbjct: 673 ALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLDDHLVTKPLASEV 732 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 +P S + + N+ Y + + +L L PD G H + Sbjct: 733 IEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIH--PDARIHGQYLHRVFE 790 Query: 818 ELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 ++ + + F+ D L I+ S Q Sbjct: 791 LVMTDHTAASFDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQ 850 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLID 934 + + P + + + + G DRID L G + I DYK+ N + Sbjct: 851 N-MTVSRQEEPFALHVTDQ-VVVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGKFYNGLS 908 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 PQL AAL+ D + Y+ L++ D+L E K L Sbjct: 909 PQLVTYLAALQQQLGPD-DLGHLFGAMYLHLQEPKLDLASFK----ALDDKLVESIYKEL 963 Query: 995 IEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + E+ ++++ ++ + S Sbjct: 964 T-YKGIFLESEKEYLANGAYQTRNALYST 991 >gi|116494974|ref|YP_806708.1| ATP-dependent nuclease, subunit B [Lactobacillus casei ATCC 334] gi|122263608|sp|Q038V6|ADDB_LACC3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116105124|gb|ABJ70266.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus casei ATCC 334] Length = 1179 Score = 171 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 108/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194 L++ A+ LAD + + T EDL+ A L I + Sbjct: 114 LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173 Query: 195 WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + P +L+ + + I + + L+ T+ Sbjct: 174 YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V LD P A H Y AK + K Sbjct: 228 AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + L+ + P +V L A + E Sbjct: 282 RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 ++A + ++ + + L A + F I P+ + Sbjct: 329 TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL + + L+ L A + + +R Sbjct: 389 IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + L+ D + Q + T KT + + Sbjct: 449 TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508 Query: 549 SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 T + + + + E+ T + L + N ++ Sbjct: 509 QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ T ++ I T RL + + G P + L+ Sbjct: 569 ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628 Query: 667 VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713 + L + + + + L + ++ + N AS Sbjct: 629 EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688 Query: 714 RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740 + ++L + + + Sbjct: 689 PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQG 748 Query: 741 WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L TT P ++ P L + S S ++ + + Sbjct: 749 VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834 + + L L P F+ D G+LFH ++ + + + + + L Sbjct: 809 FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887 + I + H ++ L +++ ++ + + Sbjct: 867 VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926 Query: 888 -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935 + G +++ G DR+D+ + + DYK T A I Sbjct: 927 TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 Q+ A+ A Y L+ D Sbjct: 987 QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035 >gi|301066541|ref|YP_003788564.1| ATP-dependent nuclease subunit B [Lactobacillus casei str. Zhang] gi|300438948|gb|ADK18714.1| ATP-dependent nuclease, subunit B [Lactobacillus casei str. Zhang] Length = 1179 Score = 171 bits (432), Expect = 8e-40, Method: Composition-based stats. Identities = 108/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194 L++ A+ LAD + + T EDL+ A L I + Sbjct: 114 LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173 Query: 195 WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + P +L+ + + I + + L+ T+ Sbjct: 174 YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V LD P A H Y AK + K Sbjct: 228 AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + L+ + P +V L A + E Sbjct: 282 RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 ++A + ++ + + L A + F I P+ + Sbjct: 329 TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL + + L+ L A + + +R Sbjct: 389 IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + L+ D + Q + T KT + + Sbjct: 449 TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508 Query: 549 SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 T + + + + E+ T + L + N ++ Sbjct: 509 QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ T ++ I T RL + + G P + L+ Sbjct: 569 ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628 Query: 667 VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713 + L + + + + L + ++ + N AS Sbjct: 629 EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688 Query: 714 RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740 + ++L + + + Sbjct: 689 PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748 Query: 741 WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L TT P ++ P L + S S ++ + + Sbjct: 749 VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834 + + L L P F+ D G+LFH ++ + + + + + L Sbjct: 809 FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887 + I + H ++ L +++ ++ + + Sbjct: 867 VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926 Query: 888 -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935 + G +++ G DR+D+ + + DYK T A I Sbjct: 927 TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 Q+ A+ A Y L+ D Sbjct: 987 QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035 >gi|227535022|ref|ZP_03965071.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187337|gb|EEI67404.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 1179 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 107/951 (11%), Positives = 233/951 (24%), Gaps = 129/951 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194 L++ A+ LAD + + T EDL+ A L I + Sbjct: 114 LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173 Query: 195 WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + P +L+ + + I + + L+ T+ Sbjct: 174 YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V LD P A H Y AK + K Sbjct: 228 AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + L+ + P +V L A + E Sbjct: 282 RPLSEGMKH-------------LADWWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 ++A + ++ + + L A + F I P+ + Sbjct: 329 TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL + + L+ L A + + +R Sbjct: 389 IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + L+ D + Q + T KT + + Sbjct: 449 TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508 Query: 549 SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 T + + + + E+ T + L + N ++ Sbjct: 509 QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ T ++ I T RL + + G P + L+ Sbjct: 569 ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628 Query: 667 VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713 + L + + + + L + ++ + + AS Sbjct: 629 EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQESSENQAS 688 Query: 714 RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740 + ++L + + + Sbjct: 689 PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQG 748 Query: 741 WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L TT P ++ P L + S S ++ + + Sbjct: 749 VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834 + + L L P F+ D G+LFH ++ + + + + + L Sbjct: 809 FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887 + I + H ++ L +++ ++ + + Sbjct: 867 VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926 Query: 888 -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935 + G +++ G DR+D+ + + DYK T A I Sbjct: 927 TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 Q+ A+ A Y L+ D Sbjct: 987 QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035 >gi|218288827|ref|ZP_03493078.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus acidocaldarius LAA1] gi|218240916|gb|EED08093.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus acidocaldarius LAA1] Length = 1169 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 118/1031 (11%), Positives = 279/1031 (27%), Gaps = 126/1031 (12%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-- 173 + +L E L L +L D + E L AL Sbjct: 86 LTQVGRQLLLRAAYDELEPSLGPLRRAVRNPSLYHHLLSAFDELTAHGVSPEQLAALLEL 145 Query: 174 ---NEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 A + + + + P + + A H+ Sbjct: 146 SAARSDEVEEKQRAVHRSLVGKLGDVMKLYVRYRQLAEAAGFADPALLYLDAVHA-VPHV 204 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + G PA + +ST+A ++ D + W+ + E++++ Sbjct: 205 SWLEDASLYFDGFHAFSPAERQFISTLARRAKRLVITWE-DTGLEGERWDALLEEASSPA 263 Query: 283 SSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + H + ++ + R + + + + Sbjct: 264 AWPHLSAWVDAHEERFSSESQAVAAYHLLECARDFAQVSLDQAFCRMPIGAPEGRFGASP 323 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396 ++ V + + EE ++A + + A+ Sbjct: 324 LVHLERALAGHAPEQPIRGVRVSVFGDRAEELCAVADEIAHLVQHERVRPRDIAVCVPTL 383 Query: 397 NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + R EL G+ + I A L+ +L + A D A+A L++ PL Sbjct: 384 DGIGRDLADELALRGVPVSIDAFSTLADHPVGQLLRGAIAAARTGFDLDAVAALLRCPLV 443 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 E + + ++ R A+ + + + + Sbjct: 444 PVKRREAFDLYLREHGVRGFAAWLAPEPWAFAARA---PRSASGLRDEEADEIRRHVGDA 500 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + L+ + +++ Q+V + + Sbjct: 501 LRPVVQAFAQPTLRPAEAARALWELVQAFRVKDALA----------QSVVQVGDDPMAGV 550 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 E+ +++L + I A E D++ + + +F+ Sbjct: 551 IHEQAWSGVTALLDDLATLEPEIALPAYEVADLVLESMASLRLTRIPSDVDAVFVCDFAR 610 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ--------SDLNLKTAEKYIGQAAHD 687 + + + + ++ P + L + L + ++ Sbjct: 611 ADNWSRPRVFVVAADDASLPPRVEPSGILRDDERLAFAEVFLRPLGRTSEDERRALECMP 670 Query: 688 FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLG--------GTDFFDNLKKRGQCY 738 + + L+ T + I + L L+ G G + Sbjct: 671 YRVMTRASEALVVTYAASVGGIERHLAPALSSLVERGHLSVDVARGEGVVPVHPVQAMRL 730 Query: 739 LDWT-------RKLDYTTKQPHY---------------------------KRPKPFPPLE 764 L +LD + P RP P Sbjct: 731 LADALSRVHTGARLDEVAQDPVVQDVLTHVLTGAGDVARFHRVLAGLCHRPRPWQLPADW 790 Query: 765 AQP-----RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + S S ++ Y +A+ L+L+ + + D GT H + Sbjct: 791 IRHLYGDPIRVSVSRLETHAKCSYRHFAQYALRLEPLALQPEAE--RDAGTWIHAAVQLA 848 Query: 820 IKKRINKNTPEIN---HLMKQIIDSH-------------FEKENLPPHIDIIWRHLFHKI 863 ++ ++Q + E P + ++ + Sbjct: 849 TQRLAEAYPRLAALGDEELEQALREIADQALAQAAADTKLESTLARPDV-AVYVEDRRRH 907 Query: 864 SHSFLE--HEEKIQSSIEKIFVNIPAK----MAIESIGIHLTGFADRIDLLKSGFVD--I 915 + + + + +++ + A + + L G DR+D L+ G + + Sbjct: 908 FEFVVRAIWMQLARGQMRPLWLEKEFRDVDMGAWNGLRVVLDGRIDRVDRLEQGELALCV 967 Query: 916 TDYKTGDNP-KKETAQKLIDPQLSLE-AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 DYK+ + + + QL + A A++ ++ + ++ FY+ L K Sbjct: 968 YDYKSSETSLHPSKVYQGLQLQLLMYAAMAMREAEAAEGELARMYGAFYVPLTVKRDPLD 1027 Query: 974 ITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA-- 1028 + D+ K SA+ + ++ V + P S + ++ + + Sbjct: 1028 VPPDRSKVSAELGAYRAKGFFLRDESAVVRVNEDLAPGRSPVVYGKQFRNDGAWAGNSTA 1087 Query: 1029 -RVAEWREEYD 1038 R EW+ D Sbjct: 1088 WREDEWQAVLD 1098 >gi|258424347|ref|ZP_05687227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635] gi|257845360|gb|EEV69394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635] Length = 1158 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 112/966 (11%), Positives = 273/966 (28%), Gaps = 141/966 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDALQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKELIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D N S + + ++ + L+I E Sbjct: 225 SVTIILTTD--------------GNNDQFSLFRKPSEVLQHIEEIANELNISIE------ 264 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 ++ + + + N C + ++E+ REE I Sbjct: 265 ---------RQYFNQFYRFNNQDLKHLEQEFDAFQINRVACQGHINILESATMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 ++ + H R + E +L ++D IL ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILYFEKQMSQAATVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMDRFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLT 672 Query: 718 RLLVLGGTDFFDNLKKRGQCYL------------DWTRKL-----DYTTKQPHYKRPKPF 760 ++ L N+ + + L D + Sbjct: 673 QIQALFNRLEITNIPRYHEVAPLSLMQHVKQTKIALFEALRSWLDDEIVADSWLDAYQVI 732 Query: 761 PPLEAQPRTY-------------------------------SFSEIKQLINDPYAVYARR 789 + + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVQLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT---GDNPKKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSAILDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVTL 1000 +V Sbjct: 1027 SGLVNA 1032 >gi|296130311|ref|YP_003637561.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] gi|296022126|gb|ADG75362.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] Length = 1076 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 124/1017 (12%), Positives = 264/1017 (25%), Gaps = 114/1017 (11%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104 V + ++RA +LR G+ + P++++ V A P VS Sbjct: 77 DVLVLAASRRAAADLRDRLAVRLGRTAGR-PLVQTAPAVAFAVLRARAGALGEPAPVLVS 135 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++ + LA L+ + P P S+P + A L D++ Sbjct: 136 GPEQDVALAELLAGHASGEVP-----GPAWPASVPEAALGARAFRDELRDLLMRAAERGL 190 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWT---------ERLVELNASSPVGYQIALM 215 DL AL ++ W+ AA + ERL + Sbjct: 191 TPADLAALGRREHRPAWVAAARVYEEYLDVMALAAGTPDAGERLDPAVVVDAAVAALRAW 250 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 E + + +++ S ATARL+ A+ GA +L D + + Sbjct: 251 DEEVPGVPCPRRRLVVVDDHQESTTATARLLRAFAD--GGAHLLLLGDPDVAVQTFRGAQ 308 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ T + L L V+ + R Sbjct: 309 PTLLAAAAAPTGPGASGAAHVV-----LRTVWRQTGPLREVTARITERVPTSGTVVHRRA 363 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALI 392 + D ++ + + +EA +A LR + + A++ Sbjct: 364 SVPPERADGPAPRVAVL------------PSAAQEAAWVAYRLRRAHLQGGVPWQEMAVL 411 Query: 393 TADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKL--NDFMAIATL 449 + A ++ L + G+ + + +PL L + D A L Sbjct: 412 ARTGSRATALRRALAQAGVPVRVVGSDVPLRDEPAVRPLLDAVRVALAPDELDAEVAARL 471 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 PL R E +A G ++ + Sbjct: 472 ACSPLGGLDAVGLRRVRRALRAEELAGGGGRS----------SDALLVEALAEPGRTATL 521 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + L+ V + + + Sbjct: 522 EPHVGRPVQRLATLLQAGRDAAA--VPGADVQAVLWAVWDRAGLAEPWRRSALAGGAGGE 579 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 R +L + F + + + ++D + +++ + Sbjct: 580 RADRDLDAVLALFRAAETFVERMPQAA-----PRAFVDWVMAQDLPADSLAPASRAAGVS 634 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM-------QSDLNLKTAEKYIG 682 +L + +++ + + G+ EGVWP ++ L ++ E Sbjct: 635 VLTPAGAAGGSWEVVAVVGVQEGVWPDLRLRDSLLGAQTLVDLLAGRATAGGPGEEHARA 694 Query: 683 QAAHDFE------MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 A +R ++ S +L + D D + Sbjct: 695 ARAAVLADELRAFALACSRARTLLLVTAVDDQDATPSPFLDLVQPGADDDGPDPRRTSAP 754 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--------- 787 LD + + A + DP + + Sbjct: 755 APLDLRGLVARLRGVLERAALEGRTDERAARTLARLAAHGVPGADPASWFGLPEPSSDDP 814 Query: 788 -----------------RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + L + + ++ + + + P Sbjct: 815 LWPAEVKVPVSPSRLETAQRCTLRWALEAAGGTPASSAQQSLGTLVHAIAQDHPTADLPT 874 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + + + P + R + + + + E + V P + Sbjct: 875 LRAELDRRGAE-LALGDGWPAVAA--RRKADAMLERLAAYL---RGAGEPLLVEAPFAVE 928 Query: 891 IESIGIHLTGFADRIDLL------KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 + + G DR++ SG V++ D KTG P A + QL A Sbjct: 929 TDRA--VVRGSIDRVERALVEGDGASGAVEVVDLKTGSRVPSVAQAAEHA--QLGAYQLA 984 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + AG+ + + + ++ +E + L++ V Sbjct: 985 VDAGAVPGLAPGTHSVGARLVHLAHGSGGPTQRRQEGLGPEETGPSWARELVDEVAD 1041 >gi|300741872|ref|ZP_07071893.1| helicase, UvrD/Rep family [Rothia dentocariosa M567] gi|300381057|gb|EFJ77619.1| helicase, UvrD/Rep family [Rothia dentocariosa M567] Length = 1172 Score = 170 bits (431), Expect = 9e-40, Method: Composition-based stats. Identities = 143/1168 (12%), Positives = 286/1168 (24%), Gaps = 208/1168 (17%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 AP + +I A ++ F +P A + + PT+ +R E + Sbjct: 9 APGTGKTERVITAAVD------FLNAGGDP---ARLLVLTPTRAGATRVRDELARRIDRS 59 Query: 72 STILPI----IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 + P + + + L +S ++ + + ++ R + Sbjct: 60 MSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEILAGHREGKGAAV 119 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + + + + D D I E+L L W A Sbjct: 120 R------WPADLHEALGTRGFRQEIRDFFDRIAEYALTAEELENLAQTLDRPAWHSVAQL 173 Query: 188 LKIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 + RL NA P L E + I+I + P+ Sbjct: 174 YTEYQQI--RRLRAPNAYDPAALIHEACAFLLANPEYLREERARFDLILIDDAQELSPSV 231 Query: 243 ARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKSTN----------ITSSNTTYST 290 RLM + G ++ P G A + + +T Sbjct: 232 YRLMRILVGREPGQVLAPYRGDQREALEAAFTPSARVLITCCTETVVQGFRGARPDLAAT 291 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR---------- 340 PQ + L + + R VI+ + P + Sbjct: 292 LPQIFPELQREELKTSYCMNAPITLAWRNIARRLPVIANAPTPREPQTAPSKYEESALLR 351 Query: 341 -NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 + D + + V + ++EA +A L +SA+I Sbjct: 352 LSDDGDLLDPRHSDELPEGVFGYLLGSPQDEANQVAQLLLEDYLYRGAAYARSAIIVRSG 411 Query: 397 NLARRVKLELTRFGIN-IDISAGIPLSTTLHSS-ILTSLLNAIFKLNDFMAIATLVKH-- 452 R + L GI + +A +P+ L +L ++ L H Sbjct: 412 TEVTRFRRVLAASGIPTVTGAALVPVRDEPAVRPFLDALSLLVYARQQSADYLKLPDHND 471 Query: 453 ------------------PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + EK ++ + R N S + L Sbjct: 472 FDGSLTENITSEAVTEEGTRSADDEAEKLARQSLADVLAEENRTNPGSGAHNAITLLTSR 531 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 Q R +E D +L + Sbjct: 532 LGGASSMEVRRLRQQLRAAELRAGGHRCSDDLLLGALLNPQALPAQGIGAAVRRVARVLA 591 Query: 555 KLTVTCLQNVCLDEHRKLPNL------------------WFEEEGKTLSSLFSKIIETGS 596 + E E + L ++ Sbjct: 592 AGHKALTERGANAETVLWALWQASGLEKIWVTESAQTGPEAERAHRNLDAMIGLFEAATR 651 Query: 597 CIKANAIEWIDII-----TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ + + +T+ + ++ + IL + ++ T+ + GL + Sbjct: 652 FVDQMPGSSAELFLDYIDAQDLPMDTLAARGKRYDAVEILTPALAAGRHWQTVYVCGLQD 711 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-----IYTRS---- 702 G WP T + L +D+ D A L +R+ Sbjct: 712 GTWPNTTVRGSLLKAGELTDICDMGIAAAQQVRMSDRVRAVRHDELRMFSTAISRANERL 771 Query: 703 --LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 ++ S + L+ T +++ R +L + Sbjct: 772 VVTAVSSTEDAPSEFFDILVPDARTADITHVR-RPMTLRALVAELRRYAQAQDTDPTLAN 830 Query: 761 P------------------------------------------------PLEAQPRTYSF 772 E S Sbjct: 831 AAAAQLNRLAQAGAPGAAPEQWWGLLPLSTEQNAFISHPHRDGLSTDSGDPEKLTVPVSP 890 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S I+ + P + + + GTL H I E Sbjct: 891 SRIETIHKSPLDWF------VSAARAEAQTDTSRSLGTLIHAIAEEY--------PDADY 936 Query: 833 HLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKM 889 ++ ++ LP + R K+ + +I E + V ++ Sbjct: 937 MTLRGQLEERLSTLALPDTWEGQQIRERAEKMVDKLAVYINEIMPGDHRELVGVEGAFRV 996 Query: 890 AIESIGI--HLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946 + + ++G DR++ + G I D KTG P K + QL+ A++A Sbjct: 997 LVPGDTVNAQISGRVDRLEKTEDGRYVIVDLKTGKTKPNKNQIAEHA--QLAAYQVAVEA 1054 Query: 947 GSFS-----------------------------QIDCRKVANLFYIRLKQKFKIDCITND 977 G+ ++ RK ++L Sbjct: 1055 GAGDAMSRDFGVEPDGLNIPAGLEHREVAPQRFEVFTRKSGGAALVQLGDGTAASSRNRP 1114 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGE 1005 +++ + D + L++ L G Sbjct: 1115 QEQDALDPETGIWAVQLVQRAAELIAGA 1142 >gi|313201053|ref|YP_004039711.1| DNA helicase/exodeoxyribonuclease v subunit b [Methylovorus sp. MP688] gi|312440369|gb|ADQ84475.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylovorus sp. MP688] Length = 889 Score = 170 bits (431), Expect = 9e-40, Method: Composition-based stats. Identities = 95/636 (14%), Positives = 197/636 (30%), Gaps = 55/636 (8%) Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-FKLNDFMAI 446 + A + + V+ L D S G+PL+T +LL + + Sbjct: 235 RLAALLDEVLHPVTVRPGLVEADRAYDFSLGLPLNTQPVVHAALALLRIFWQQRIEQQDF 294 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + L+ +P E ++ L + ++ L + + Sbjct: 295 SVLLLNPYWSASLGEADARAQLDSRMRQWLPQTVSMMRLLRLIERLQEGENPLP------ 348 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 I Q + L + + S W L + Sbjct: 349 --------------------IGQLLQDLRAGWAVREAQPRRQLPSLWAAEFEQLLAALQW 388 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 R + + F+ + SL + N ++ + + L + +P++ Sbjct: 389 PGERSISSHEFQAQRAFSRSLQALARLDVFGDTLNGMQALQRLGELCREQIFQPEVSGDP 448 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA- 685 + ++G LE D L + G+N+ VWP NP + +Q + A+ + A Sbjct: 449 PVQVMGMLEGAAAPLDALWVMGMNDHVWPPPPRPNPLIPATVQRAAGVPNADSAVQTAFA 508 Query: 686 --HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + ++++ +L++ AS L + V G + Q + Sbjct: 509 RILHQRLLHTAPLIVFSSALKDGERQLRASPILSDIPVFDGD------WAKAQTLAEQLA 562 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 ++ Q P E + + +K P Y + L + Sbjct: 563 HGEHAALQVLDDHMAPAV-GEGEHVSGGTGLLKAQAICPAWAYYQYRLGARELKAPVNGL 621 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID-----------SHFEKENLPPHI 852 + +RGTL H ++ + R ++ + E L P Sbjct: 622 EPAERGTLVHGVLQHFWQGRDLAYLQALDAEELHAALAEAAQQALQDFAAERDETLSPAF 681 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + + K+ ++L E+ + + K+ IE + I L DRID L G Sbjct: 682 CQLEQERLIKLVSAWLAFEKTREVDFSVLDCERDTKVMIEGVEIRL--VLDRIDQLPDGR 739 Query: 913 VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK---AGSFSQIDCRKVANLFYIRLKQ 967 V I DYKTG P ++ +PQL + AA + + + + Sbjct: 740 VLIMDYKTGQKPDIRNWAESRITEPQLPVYAAFSLDDGEVAAVSFAMVRTEEHAFSGIAG 799 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + + + + + D + + ++ + Sbjct: 800 EEILPALMTLDDRKARDIFDAERFADWHTLLDHWRE 835 >gi|254758684|ref|ZP_05210711.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Australia 94] Length = 1171 Score = 170 bits (431), Expect = 1e-39, Method: Composition-based stats. Identities = 109/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V +D N + + ++ I+ E Sbjct: 225 LMICGARVTVTLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683 +L+ + + T + + + L E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 684 AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716 A+ +D T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|332975150|gb|EGK12052.1| ATP-dependent deoxyribonuclease subunit B [Desmospora sp. 8437] Length = 1079 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 128/1009 (12%), Positives = 270/1009 (26%), Gaps = 194/1009 (19%) Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215 I ++ + L L + + + E L E + M Sbjct: 119 IGELKRAGVRPARLRRLW-GDASEE---KYREMTRVYEVYQELLREFGLLDHEEPFLIAM 174 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + + ++ +L+ + + + G W+ Sbjct: 175 ERVRKGECRLPER-VVAEHFVDLSHLQEQLLVQLVSAGVPVSLHLG---------WDARR 224 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + + T +L D + + R+ Sbjct: 225 PRLFSET--------------RRLADRM------------SRRGFHIRNPFSPSPGTGKT 258 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALI 392 + +R + + P V ++ A E E + A++ L E+ AL+ Sbjct: 259 EALLRLEEEAFHPSPETVTGQGAVEVLSAPGEAHEVEVVVAAVKQWLLESGAALSDVALV 318 Query: 393 TADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 T + L + GI D IPLS ++ S L + L+ Sbjct: 319 TNRPEEYHPLLFTSLKKAGIPCDRPETIPLSQHPLLGLVRSALALRTGKEELRP--ELLD 376 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 HP + + + L + N + + T+ + + ++ Sbjct: 377 HPCLPWSAGQGEGRIWREILREMGHPQNLVDFQQGLARIDPEQFGCTEDSLARLQNFYRW 436 Query: 512 LSEEDKEL-AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 L E E V+ + I PL + W + E Sbjct: 437 LEEIPTERSWRGWVEWMSDWIRPLDPRPRAGQVAGDPEGMELWAVEVKAWKSLCSIAEE- 495 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 N + ++ + G+ V + + + + Sbjct: 496 ---------------WAAVFTKSRLGEEACNPATFAAVLEQAARGKKVVKRPARRGGIRL 540 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-----LKTAEKYIGQAA 685 L R + + + G EG WP+ ++ + + L L AE+ Sbjct: 541 LEPNRIRGDRYRAVFMLGCTEGKWPRFFREDWLIPDRERLRLRKEGLSLPLAEELREHQL 600 Query: 686 HDFE--MANGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKK--------- 733 F A T L+++ S + S +LQ LL + G + ++ Sbjct: 601 LPFFLCAAAATEKLVFSYSSASAEGKGQLPSPYLQELLQVFGKEGVQRWERSIGDRFPLL 660 Query: 734 --------RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----------------- 768 RG TR D + E Sbjct: 661 WEDCTSLLRGAERAVATRAADGPKSDALAEAILHRLREEHPSWFDTLSARVRAEGKRRSE 720 Query: 769 -------------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 +S S + +++ + +A RIL + Sbjct: 721 GFTVFDGMLPPSSLTASLGEKLRDGVWSASVLNEVVRCRFHFFAGRILGAQSRDVGDEPL 780 Query: 804 DRTDRGTLFHNIITELIKKRINKNT-----PEINHLMKQIIDSHFEK------ENLPPHI 852 +RG L H I+ + + + + +S F + E P + Sbjct: 781 SPLERGNLMHRILCRFWDRYREQPPTSSAAESAREHLIAVTESVFSEFVREKGEIREPAL 840 Query: 853 DIIWRHLFHKISHSFLEHEEKIQ----SSIEKIFVNIPA--------------------- 887 + R ++ S L+H+ + + ++ + Sbjct: 841 LGVERKRLERLLLSILDHDLAWRENVDGEVRPRYLELSFGLAKNPALVDRREMDPASREE 900 Query: 888 --KMAIESIGI-HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 ++++ + L G DR+D + G+ + DYK+G P + + QL L L Sbjct: 901 TAELSLGNGRFLRLRGKVDRVDQDEEGYYMVYDYKSGPAPGLKEVLQGSHLQLPLYLWVL 960 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK---------------------KKYSA 983 + F + V ++ +K K ++ ++ + Sbjct: 961 QET-FGMDPGKGVGAAYFTPGTRKGKSPGDHRNRGIWRKEEAGRAGISSRIKGVLEEDAW 1019 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + + E+ L E + L+ G+ + + + RV E Sbjct: 1020 EGVLEEIRTGLAERLERLEQGDF---AVDPAGGICPDHCPHRTVCRVDE 1065 >gi|49485742|ref|YP_042963.1| hypothetical protein SAS0836 [Staphylococcus aureus subsp. aureus MSSA476] gi|81649661|sp|Q6GAW0|ADDB_STAAS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|49244185|emb|CAG42611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 1158 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 113/967 (11%), Positives = 269/967 (27%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFNQLY--RFNNQDLKHLEQEFDVLQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVFLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQSDLNL-------KTAEKYIGQAAH--DFEMANGTRHLIYTRSL-RENNIPTIASRWL 716 + T++ A M + + ++ L + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYIAMTRARQDVTFSYRLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K ++ + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|302332579|gb|ADL22772.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus JKD6159] Length = 1158 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 113/965 (11%), Positives = 271/965 (28%), Gaps = 141/965 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLESFIADKNMQTRTKNKLEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ + + + I I G ++ + + Sbjct: 167 FEQRIQKEFIT--GEDALQYFIDCMPKSEWLKCADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 N N R +S+ + + N C + ++E+ REE I Sbjct: 257 NELNISIERQ-YFKQSYRFNNQDLKHLEQEFDALQINRVACQGHINILESGTMREEINEI 315 Query: 375 AIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 A + + + + + A++ D + A L + I +I ++ ++ Sbjct: 316 ARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIR 375 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 SL+ I + L+K + + + + LE L +D + Sbjct: 376 SLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDELF 433 Query: 492 VLDRIATQKNNTHVPHWQSRLSEE----DKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 ++ + H R + E K+ + H + ++ T K + + Sbjct: 434 NVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVFDKILHFEKQMSQAETVKDFATAFYES 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + +T + L+ ++ L + ++ + +++ Sbjct: 494 MEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 553 VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612 Query: 668 MQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWLQ 717 + +L+ + + +A + + ++ ++ SL + S +L Sbjct: 613 EKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLN 672 Query: 718 RLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRPK 758 ++ L N+ + + W + Sbjct: 673 QIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVI 732 Query: 759 PFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYARR 789 + S S + P+ YA Sbjct: 733 RDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASH 792 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL- 848 LKL+ K + D G +FH+++ + ++ P ++Q+ + E+ Sbjct: 793 GLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKPLDLKKIRQLTNEALEEILPK 850 Query: 849 -------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK----------- 888 I + L + S + Sbjct: 851 VQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIA 910 Query: 889 ---MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLSL 939 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 911 QTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMT 970 Query: 940 EAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + I K L Y + + + K + + +L +K L Sbjct: 971 YMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK--L 1026 Query: 995 IEIVT 999 +V Sbjct: 1027 SGLVN 1031 >gi|239636507|ref|ZP_04677509.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603] gi|239597862|gb|EEQ80357.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603] Length = 1156 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 124/1021 (12%), Positives = 277/1021 (27%), Gaps = 151/1021 (14%) Query: 56 AIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-EL 112 + E++ + IL P + E+ F D L+ +L V + +RL + Sbjct: 18 MVNEIKDKMKRDPLGDPIILIAPTQSTFQ--FEQAFVNDEALNGSLRTEVLHFERLSHRV 75 Query: 113 ARLILIWRNKLPDIIKDLYP--------ESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + + + + + + L S A ++ LA+ I + Sbjct: 76 FQEVGGFTEQRLSKAATEMMIYHLVQQYQDDMKLYRSQAKYFGFSEKLAEQIQDFKKYSV 135 Query: 165 KWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 E + N + + + + K + R+ V + + + Sbjct: 136 LPEHIDEFLNTHHVQTRTKHKLEDISLIYKQFESRM--HGQFITVEDSLRQFIKQMDQSE 193 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + I I G ++ + H VL D + Sbjct: 194 WLKRSEIYIDGFHNFSTLEYEMIQALVKHAKKVTVLLTTDGNQDAFSL-FRKPSEVLTHL 252 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + H Q + D + D+K L + + + Sbjct: 253 EDIAQDLHIQLNKNIFTDIYRFENNDLKSLESQFDALQI--------------------- 291 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---KKKSALITADRNLAR 400 QK + + E+ + REE IA + +N + A++ D + A Sbjct: 292 -------TPQKSEGFIDIFESSSMREEINEIARQILKDTRDNQLRFQDIAILYRDASYAD 344 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + L + I +I ++ ++ SL+ I A+ L+K + F Sbjct: 345 LFESILPLYQIPFNIDTKRSMTHHPIMEMIRSLIEVIQSNWHINAMMRLLKTNVLTDQFK 404 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KEL 519 + LE A+ +D + ++ H + R + E +L Sbjct: 405 NSTHL--IDLLENFAIERGIYGKKWLDDEIFNIENFRKMGRKEHQLTQEERDTFEQVVKL 462 Query: 520 AVLLVDHILQCITPL---VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 ++D IL + T + + ++ + +T + D + Sbjct: 463 KTDVIDKILHFEQAMNEGETVRDFATAFYESMEYFELPNHLMTERDMLDNDGY-HEQAEE 521 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 ++ L + ++ + ++++ ++ + + I + Sbjct: 522 IDQIWNGLIQILDDLVTVFETENMSLSRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLA 581 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAH--D 687 ++ N + L G+N+G P+ + + +S + T++ A Sbjct: 582 KVDNKKHIFLVGMNDGSMPQPISSSSLISDDEKKLFEENAQIELSPTSDILQMDEAFVCY 641 Query: 688 FEMANGTRHLIYTRSLRENNI-PTIASRWLQRL--------------LVLGGTDFFDNLK 732 M+ T + ++ SL + S +L ++ + L Sbjct: 642 IAMSRATSKVTFSYSLMGASGDEKEMSPFLAQIKDIYQDLNAINIHQMHLAQPMSLIEHV 701 Query: 733 KRG-----QCYLDWTRKLDYTTKQPHYKRPKPFPPL------------------------ 763 + + W + + Sbjct: 702 HQTKINLFESLRAWLDEEIVADTWIDAYQVMRDDEHLNKDLDYLITSLTYDNETTQLSET 761 Query: 764 -----EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 + S S + P+ YA L+L+ K + D G +FH+++ Sbjct: 762 LAQDLYGKTINASVSRFEGYQQCPFKHYASHGLRLNER--TKYELQNFDLGDIFHSVLKY 819 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEH 870 + + +K + E I + L Sbjct: 820 ISDRINGDFKHLDQKKIKALTTEALETILPKVQFNLLNSSAYYRYLSRRIGAIVETTLNA 879 Query: 871 EEKIQS--SIEKIFVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF- 912 + + + + + I++ G DRID K Sbjct: 880 LKYQGDYTKFKPQQFETGFRKKPKSDDELIAQSLTTKQGVPINIRGQIDRIDTYTKDNQS 939 Query: 913 -VDITDYK---TGDNPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIR 964 V+I DYK + + Q+ + + I K L Y Sbjct: 940 YVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVLQNQDRLGLTDI--VKPGGLLYFH 997 Query: 965 L 965 + Sbjct: 998 V 998 >gi|295394600|ref|ZP_06804819.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC 49030] gi|294972493|gb|EFG48349.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC 49030] Length = 1041 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 120/1058 (11%), Positives = 271/1058 (25%), Gaps = 163/1058 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-VS 104 SV + P + LR+E +T +S+ A + + VS Sbjct: 53 SVLVLTPNREHADVLRNELKSPVRSSAT----ARSVHSYAFGIVAAHTATTKGVPALFVS 108 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + + LA + + + P+ S+ A L D I I + Sbjct: 109 GADQDVRLAEQLQGYFDSTVT-----GPQWTTSMTPELARTDVFRTQLRDSISEIMGHDF 163 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV---------GYQIALM 215 ++ + L + W F+ + L E + + Sbjct: 164 SYDRIVELAHTHNRPEWE-VLAFIGREYEELLTFLGEGAVDTSAVFTKAKHIVEESRVVP 222 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I+ + + + G T + + Sbjct: 223 GKAWDFAPEVLPAWILCDSVQDFPDSALGFLQALYQ--RGVCFALTCSPDSATQSFRGGS 280 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + L + + G + Sbjct: 281 GDVFAG--------------------RHRLGVHTDIALDPLDPHIRGAGAITQTVDSLMR 320 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALIT 393 S + + S V E + A IA + R + A++T Sbjct: 321 DSADPVHALGYMAPRGSAEGSSQVFSCECSSGSNAARMIASMIYDRHQDGVPFAEIAVVT 380 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + A ++ EL GI + S + A+ + + ++ P Sbjct: 381 RRASSATQLSDELAASGIPVRTS-----------------VRALASDPATLPLLRILSLP 423 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 +P + A G ++ + L+ + + + W Sbjct: 424 PESPEWPNAATACVTGAF------GGLDALTLRSLQRELTQLSGVEGPLETLMEWALETD 477 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E + +++ + + + ++ H Sbjct: 478 TELPAAVERAKRMVKAAQE--SSHELAQYAVWAVWNAAEVADEWQENALRNPAGHHSSY- 534 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 + L +L K+ E + + ++++ +++ + + + Sbjct: 535 ----LDAVIRLLALAEKLNEGATSQVTGRDFAMKVMSQKFAQDSLAH-TALNDIVTVTTP 589 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM--- 690 +FDT+I+ L EGVWP T + + LK ++ +F Sbjct: 590 AGVAHTHFDTVIVTDLQEGVWPNPTVRGTIFKTPQLMRV-LKDPATQEELSSENFSQHDF 648 Query: 691 ANGTRHLI----------YTRSL------RENNIPTIASRW--------LQRLLVLGGTD 726 R I +R+ N + S + D Sbjct: 649 LARRRETIRDEGKLFVAALSRARTRVAVVAVNGHGELPSPLFTAVKGMPWTSQYWVDEPD 708 Query: 727 FFDNL--------------------KKRGQCYLDWTRKLD-------YTTKQPHYKRPKP 759 + + + + + L + Sbjct: 709 ILPSTLSEIAGSARLQVNQALDSGDEDSAKPWAQLLKTLHSSGVSAADPNTWWLNPSSEL 768 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 +P S S+++ P + + D G L H I Sbjct: 769 PAMPSDEPVRISPSQVETYDQCPLKWFFNQN------SSQTVDTYPQAFGNLIHEIAQTY 822 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + ++ + + + F E+ + L K + Sbjct: 823 PR----GGLADMLNHFDEKFEE-FTFESEWE--RQREYADGRATVEN-LNEYLKNRGDKT 874 Query: 880 KIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQ 936 + + + + + ++G DR++ G I D+KTG+N P K + Q+ +PQ Sbjct: 875 FVAAEVVVRSDLDVPLGPARVSGRIDRLEKTSDGAAYIVDFKTGNNLPSKPSVQE--NPQ 932 Query: 937 LSLEAAALKAG---------SFSQIDCRKVANLFY-IRLKQKFKIDCITNDKKKYSADEL 986 L+ A++AG I L Y + + K ++ ++ Sbjct: 933 LATYQVAIEAGQATFINDVELIRGITECAGGELVYPRKAAGQRKPPSNVREQGPIKDTDV 992 Query: 987 SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 K++ + +V + F + S+ + + Sbjct: 993 YTKTIATIESLVRSARTHT--FTA--TPSDDACRTCAF 1026 >gi|116334820|ref|YP_796347.1| ATP-dependent nuclease, subunit B [Lactobacillus brevis ATCC 367] gi|122268501|sp|Q03NA6|ADDB_LACBA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116100167|gb|ABJ65316.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus brevis ATCC 367] Length = 1201 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 104/1002 (10%), Positives = 258/1002 (25%), Gaps = 159/1002 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + + ++I ++L ++ +S + + + A + Sbjct: 92 PRISPAGLNMLIYQIIQTHADELTIFRGEVDRPGFVSQLATQLAEFKVGQVTAADLM--- 148 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + L L I + + ++ + + + E Sbjct: 149 ------SAIEQLDTTN--TDLQAKLHDLMIIYEAFETQM--MGKFVENTDLLNQLATYLE 198 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + + G + +L++ + V LD P Sbjct: 199 QQVDLQHAHFYLEGFSQLSAQERQLVAILIQRSASVTVALNLDHGYPQK----------- 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 T + AKL L + + + + R + L + Sbjct: 248 -----LPDKTTLFFQSAKLYQQLYMVAQANRVPVLIDQQAKTARV----SADLQALDTYW 298 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396 + + L + P+ + + + +++A N E +A +R + + + ++T Sbjct: 299 QASQTLSPQ-PSAVEKPTHIQIVQAANRYVEVSRVATQIRQLVATGNYRYRDFLVLTRHL 357 Query: 397 NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + V + A I ++ +L +L + + + + ++K L Sbjct: 358 DAYQTVIDPIFQAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELL 417 Query: 456 KFGFPEKYL------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 + L +A E L+ + + Sbjct: 418 LPRDADGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRD 477 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCL 566 ++S + + + + L T ++ + ++ +T Sbjct: 478 DQISAQINRIRRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQAIA 537 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 E+ + + + ++ ++ G Sbjct: 538 AGDLTKAGQ-PEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPSTLD 596 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---------NLKTA 677 + I + + N + G P N L+ + DL Sbjct: 597 QVVISESGIVQANNRKITFIMGATADTMPDNQIPTTLLADNDRQDLSARLQQVDDGTYLR 656 Query: 678 EKYIGQAA-----HDFEMANGTRHLIYTRSL--RENNIPTIASRWLQRLLVLGG------ 724 + Q A + +G+ LI++ + S ++ R+ G Sbjct: 657 DDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVARIKDYFGLSIDIA 716 Query: 725 --------TDFFDNLKKRGQCYLDWTRK--------------------LDYTTK------ 750 + R + L T Sbjct: 717 AANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVLNLLRTDPTYGELT 776 Query: 751 -----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P P L S S++++ +PYA + + L L F Sbjct: 777 TKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYFLKYGLNLQERDVF 836 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLPPH----- 851 G FH + L+K ++ ++++ D K Sbjct: 837 --ALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAKLLDTTENPQFA 894 Query: 852 ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM---------AIE 892 I +++ + E+ ++ + + + + + Sbjct: 895 ILESSHRMGYIRQQLMKTMRQMAKTL--QEQSKRTKLRPKRTEVQFGLGDERGLAALSFD 952 Query: 893 SI---GIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 + + G DR+D +K I DYK+ ++ + A Q+ A+K Sbjct: 953 VGKRRQVTVRGRIDRLDAVQVKDKTYLGIVDYKSSEHKFSYQEAYYGRAMQMLTYLDAVK 1012 Query: 946 AGSFSQIDC-----RKVANLFYIRLKQKFKIDCITNDKKKYS 982 + +D ++A Y+ L+ + + Sbjct: 1013 QNLPTLLDAPTAKDAELAGAVYLHLQNPILKAAEVLGEDPLT 1054 >gi|30261248|ref|NP_843625.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames] gi|47526410|ref|YP_017759.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49184080|ref|YP_027332.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. Sterne] gi|65318519|ref|ZP_00391478.1| COG3857: ATP-dependent nuclease, subunit B [Bacillus anthracis str. A2012] gi|165873105|ref|ZP_02217723.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488] gi|167635422|ref|ZP_02393736.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442] gi|167640181|ref|ZP_02398447.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193] gi|170688092|ref|ZP_02879304.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465] gi|170707684|ref|ZP_02898136.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389] gi|177655490|ref|ZP_02936933.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174] gi|190566641|ref|ZP_03019558.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I] gi|227816014|ref|YP_002816023.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684] gi|229600115|ref|YP_002865671.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248] gi|254682691|ref|ZP_05146552.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CNEVA-9066] gi|254725484|ref|ZP_05187266.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A1055] gi|254734109|ref|ZP_05191822.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Western North America USA6153] gi|254740247|ref|ZP_05197939.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Kruger B] gi|254753587|ref|ZP_05205623.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Vollum] gi|81583097|sp|Q81TW2|ADDB_BACAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|30254862|gb|AAP25111.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames] gi|47501558|gb|AAT30234.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49178007|gb|AAT53383.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Sterne] gi|164711159|gb|EDR16718.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488] gi|167511782|gb|EDR87162.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193] gi|167529250|gb|EDR92003.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442] gi|170127459|gb|EDS96334.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389] gi|170667987|gb|EDT18738.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465] gi|172080089|gb|EDT65185.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174] gi|190562193|gb|EDV16161.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I] gi|227004849|gb|ACP14592.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684] gi|229264523|gb|ACQ46160.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248] Length = 1171 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 108/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683 +L+ + + T + + + L E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 684 AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716 A+ +D T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|319442810|ref|ZP_07991966.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM 44702] Length = 1151 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 137/1080 (12%), Positives = 289/1080 (26%), Gaps = 149/1080 (13%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 +P AP + ++ AL+ A V + P+K A +LR Sbjct: 85 PRDRPYAVLGAPGTGKTSLLLDALVTYLGNGG---------DPAGVMVVTPSKEAATDLR 135 Query: 62 SEFIEIT----------------GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 ++ G +T P ++S+ A L Sbjct: 136 GRLTDLLCDLAGDVDGTAAADATGYAATGTP-VRSVHSWAFALLRAVAQLREE------P 188 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + RL+ A L+ R+ L D P + + A+ L D++ E Sbjct: 189 LPRLMTGADHDLLIRSLLQGNAVDGTGSWPERI-RPALPLVGFARQLRDLLLRAEERGIG 247 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ--IALMRAEAEHLM 223 + L L E W+ A DFL+ + + S + ++ L + Sbjct: 248 PDALADLGREHDLDMWVGAGDFLRESRRVVKLSGSHALNVSELLHRVLDELENTPEGRRI 307 Query: 224 KGTKGP----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + +++ + PA+AR + + GA VL D + E Sbjct: 308 LDRQRDTVKLLLVDDAHNLDPASARFLEML--TTPGARVLVAGDSDQCVFHFRGADEDYL 365 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + + S + + L + R+ + Sbjct: 366 TGLAEDADHRIVLSRSYRLGAAAVTAVNRLGRLLPPSRTRVPVRATEAA----------- 414 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 E ++ D+ + A + E +S+A A+R + + + A++ Sbjct: 415 -TEAATEAGTEDVAGPAPDLVIRRAPSVTSERLSVADAVRRAHVTDGVDWDRIAVVVRTA 473 Query: 397 NLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 ++ L G+ + + + L+ S L L+A+ + + LV+ P+ Sbjct: 474 GEIHPLRRTLLSHGVPVKVDPTSVVLAEQPLVSSLLLALDALVRPLTVAELQQLVESPVG 533 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 L R + +L V + + + + L + + + W+ R Sbjct: 534 G--ADPVMLRRMERSLAPVLVGTGLRAMEAVGL------MVTGRADEQETEAWRRRFGPR 585 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + L + I + + + + T + +L Sbjct: 586 ELGLLDQVRAVIEAGQVVAEDGGSVEAVLWAVWQATGLSTRLQTRALRGGTLGSQADRDL 645 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTL 634 L+ + ++D + + + + + + IL Sbjct: 646 DAVMSLFDLAGDLVERTPA-----ITLETFLDGVRAQELPTGARDRRGVRPDAVEILPAH 700 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------KYIGQAA 685 + ++ +I+ G+ E WP + DL + E + + Sbjct: 701 AAAGREWEVVIVSGVQEDSWPAGPTVGGLFGQQELVDLLDRGIEPTTIVSRASSALAEER 760 Query: 686 HDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 F +A +R+ + T + ++ SR+L + +N + Sbjct: 761 RLFLLAVSRASRYTLVTAVESAGDEASVPSRFLDDITGGEEATAVENADPESEPRPHPVD 820 Query: 744 KLDYTTKQPHYKRPKPF--------PPLEAQPRTYSFSEIKQLI------NDPYAVY--- 786 + + + P P R + + L DP + Sbjct: 821 TVADSLPRVLAMEPLVAELRDAVCDPDRPGHERRAAAENLATLAEAGVYGADPAEWWGTA 880 Query: 787 --------ARRILKLDFI----------------------------PHFKKDPDRTDRGT 810 + GT Sbjct: 881 GPSSTGPAVAHRRGDSEPTLRISPTTLENLGRTTGPACDLASFLDSLRSTPTTEPMKVGT 940 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L H + ++ +I + + + P Sbjct: 941 LIHALAEGFADGLTPEDAADIVREVVPWL------VDGPAWTARPLTEGCLDAVDRLHGW 994 Query: 871 EEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 + + + V + I + + L G DR++ G + D+KTG N K Sbjct: 995 LTQRAGNGRTVEVEKKLEHMIGHTDTGLPVILAGRTDRLETTADGASTVIDFKTGKNAKT 1054 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 PQLS + A L Y R++ + E Sbjct: 1055 VKEAAG-SPQLSAYQLLVS---LEDGRRADGAMLVYPRVENAKVKVLQQGQLSEDDLAEF 1110 >gi|191638485|ref|YP_001987651.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B) [Lactobacillus casei BL23] gi|251764591|sp|B3WEJ2|ADDB_LACCB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|190712787|emb|CAQ66793.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B) [Lactobacillus casei BL23] gi|327382520|gb|AEA53996.1| Putative ATP-dependent nuclease subunit B [Lactobacillus casei LC2W] gi|327385717|gb|AEA57191.1| Putative ATP-dependent nuclease subunit B [Lactobacillus casei BD-II] Length = 1179 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 107/951 (11%), Positives = 235/951 (24%), Gaps = 129/951 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194 L++ A+ LAD + + T EDL+ A L I + Sbjct: 114 LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173 Query: 195 WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + P +L+ + + I + + L+ T+ Sbjct: 174 YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V L+ P A H Y AK + + R Sbjct: 228 AAEVTVSLVLNKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMK----VPIRLDR 277 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 G + + + + L+ + P +V L A + E Sbjct: 278 FAKPRPLSEGMNHLAD---------WWQTSTNLQPQAPAQTAQNKEVELAVATDPYHELR 328 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 ++A + ++ + + L A + F I P+ + Sbjct: 329 TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL + + L+ L A + + +R Sbjct: 389 IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + L+ D + Q + T KT + + Sbjct: 449 TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508 Query: 549 SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 T + + + + E+ T + L + N ++ Sbjct: 509 QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +++ T ++ I T RL + + G P + L+ Sbjct: 569 ELLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628 Query: 667 VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713 + L + + + + L + ++ + N AS Sbjct: 629 EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688 Query: 714 RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740 + ++L + + + Sbjct: 689 PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748 Query: 741 WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L T P ++ P L + S S ++ + + Sbjct: 749 VLASLKQTKLAPLAQKLAGSLTYQNNPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834 + + L L P F+ D G+LFH ++ + + + + + L Sbjct: 809 FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887 + I + H ++ L +++ ++ + + Sbjct: 867 VAAITKRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGQIGD 926 Query: 888 -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935 + G +++ G DR+D+ + + DYK T A I Sbjct: 927 TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 Q+ A+ A Y L+ D Sbjct: 987 QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035 >gi|229143846|ref|ZP_04272265.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24] gi|228639607|gb|EEK96018.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24] Length = 1171 Score = 170 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 122/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R A + R ++ D + + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1044 >gi|260583801|ref|ZP_05851549.1| exonuclease RexB [Granulicatella elegans ATCC 700633] gi|260158427|gb|EEW93495.1| exonuclease RexB [Granulicatella elegans ATCC 700633] Length = 1189 Score = 170 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 105/948 (11%), Positives = 248/948 (26%), Gaps = 137/948 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L+ ++ + ED + I K++ + L + Sbjct: 125 GFIERLSAVMQEFRLGGIEIEDFSGWFEQDSYEEIDQRLKEFGIIYKHYLDYLKQ----D 180 Query: 207 PVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 V + L + A+ L + ++I S ++ + G Sbjct: 181 FVQSEDLLKILAQEISLKDLSNTYVVIDQSYHLNAMELEVIDALVKSCGGVEFYTTATTD 240 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 ++ + +++LL++L I V E+ + Sbjct: 241 -----------AFKPKEKLESSLFDSNRQLVSRLLNWLMIDESKP-----VLKELNEENC 284 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS-IAIA--LRMSL 382 FL + + + LE + D+ ++ER+E +A L S Sbjct: 285 AYHPDFLELEQYWLETSGGLETSSNRTSRKIEDLQWTTYEDERQEIQETLATIKTLVDSG 344 Query: 383 DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + +++ + + + L + I + + +L ++ Sbjct: 345 KYRYQDIQILSRNLEEQQTLLQPLLETYQIPYFMDLSDTMEHHPLIQVLDAIFAIQKHFW 404 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + I L++ + K+ E+ + +D ++ + Sbjct: 405 RYHNIMNLLRSEYCFWPLNRAN-LENKHDEEVTLRDALIHYRQKLDETETIILAQGYEGK 463 Query: 502 N---------------THVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKN 542 + + L + A L + I+ + P L +T K Sbjct: 464 DWISRKTWNYQVENIDEDSLSSREVLVHQQLTQAQELREQIVSLLEPFYKKLDKVETTKE 523 Query: 543 STCGNLSISDWTKLTVTCL--QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + + +T L +N + ++ L + + Sbjct: 524 AITLLYQLLEKIGVTEAFLYWRNHAANIGDIQTARRQDQVWNEFLKLLEEYVYIFGDEPF 583 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + ++ + L G R GL++GV P+ + Sbjct: 584 DWEIFQLLLHTGFEHTHYNMAPSTLDQLTCTGIDSVRYSPKKVTFAIGLSQGVLPRMEEE 643 Query: 661 NPFLSRVMQ----------SDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 + ++ + L+ T +K + +++ L + + Sbjct: 644 SGLMTDEEREYLLSKLDSGRFLHPTTIQKQSVEPFLFYKVLTSATEKLYLSMHHTDKGAK 703 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQC-------------------------------- 737 +S +++R+L D +K+ + Sbjct: 704 LKSSSFVERILNQYEITTQDGNQKQQERFEQGEFVTIHELFTTLLQKLRQYKFSKEEDIP 763 Query: 738 --YLDWTRKLDYTTK----------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 ++ L + L S S+++ Sbjct: 764 SIWIALPHLLRQDKDFQQEYHTLVDSVFHLNIAKQLPKELAAELYGNHLYLSTSQVETFY 823 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMK 836 DP++ + + L + F+ G FH + I+K + Sbjct: 824 KDPFSHFLQYGLNVRERREFE--LTAAGSGEYFHETFDQFIRKVHELKLDIRAIDAATTE 881 Query: 837 QIIDSHFEKENLPPHIDIIWRH--------LFHKISHSFL--EHEEKIQSSIEKIFVNIP 886 +++ F+ N I+ L L + Q + + Sbjct: 882 KVLKEIFDSMNDDARFQILNATPRMNWTKVLLQDTIRQTLSAALLQLQQLQVTPWKTEVV 941 Query: 887 A------KMAIESIG---IHLTGFADRIDLLKSG---FVDITDYKTGDNP-KKETAQKLI 933 K+ I + + G DRIDLL++ + I DYK+ + I Sbjct: 942 FGAKSDKKIEIPLNDTQSLFIRGKIDRIDLLETEKGYHLGIVDYKSSAQKFDINRLRYGI 1001 Query: 934 DPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKK 980 QL + + Q Y+ + Q Sbjct: 1002 QLQLLTYLSVARNIVSDQFKKTVTPYGGLYMHVFQPSFNAKDLKSDAD 1049 >gi|25010944|ref|NP_735339.1| exonuclease RexB [Streptococcus agalactiae NEM316] gi|81457035|sp|Q8E5U0|ADDB_STRA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|23095323|emb|CAD46534.1| unknown [Streptococcus agalactiae NEM316] Length = 1077 Score = 170 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++T DL L + L Sbjct: 97 FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 ++ L E + + + L K I I+ G T L+ ++ Sbjct: 150 IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ I+ A + + S + + + + + Sbjct: 210 SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K + ++ + S D + + + E N+++ Sbjct: 264 SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306 Query: 370 EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + ++ D + + ++ I ++ Sbjct: 307 EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + L K + + A + + + + Sbjct: 367 VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + K L R+ T + + P +++ I L + Sbjct: 427 VGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++S Q +E KT + + + K N E+ Sbjct: 475 LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + + + + + G+ + +PK +S Sbjct: 523 LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582 Query: 666 RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714 + + + F + + L+ T N S Sbjct: 583 DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642 Query: 715 WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741 +L L +G + K Q + Sbjct: 643 YLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702 Query: 742 TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R L + P E P S S + N+ Y + Sbjct: 703 VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L+ PD GT H + L+K + ++ E + + F+ Sbjct: 763 LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + I+ + + S + ++ I+ I + G DR Sbjct: 821 SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960 ID L G + + DYK+ +K QK + PQL A + Q + Sbjct: 879 IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ + + + K + D+L K+ + L L E+ F+++ + K ++ Sbjct: 935 MYLHM-----QEPKQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988 Query: 1021 QSE 1023 SE Sbjct: 989 YSE 991 >gi|239631426|ref|ZP_04674457.1| ATP-dependent nuclease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525891|gb|EEQ64892.1| ATP-dependent nuclease [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1179 Score = 170 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 107/951 (11%), Positives = 232/951 (24%), Gaps = 129/951 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-ADFLKIASKY 194 L++ A+ LAD + + T EDL+ A L I + Sbjct: 114 LTIYAGEAHNTGFVTQLADQLSELVTGRITAEDLNTTVAALTPGDRHRAKLRDLGIILDH 173 Query: 195 WTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + P +L+ + + I + + L+ T+ Sbjct: 174 YEAE------IGPYATNASLLSGLQQVMRNQDLSHTFIYLNDFNVFSASETGLVETMIET 227 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V LD P A H Y AK + K Sbjct: 228 AAEVTVSLVLDKPYPAAPPVAPNLFLPAGRLY------HRLYQKAKTMKVPIRLDRFAKP 281 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + ++ + P +V L A + E Sbjct: 282 RPLSEGMKH-------------LADWWQTSTNVQPQAPAQTAQNKEVELAVATDPYHELR 328 Query: 373 SIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 ++A + ++ + + L A + F I P+ + Sbjct: 329 TVARQIYQAVRQGARYRDFLILARRLDPYAAVIPAIFEEFNIPQFTDLERPMKDHPLVVL 388 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL + + L+ L A + + +R Sbjct: 389 IESLFAIQDHDYQYQDVMRLLHTELLLPENMDIAAFRDALDTTDNHLVRTGITGKKRWTQ 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + L+ D + Q + T KT + + Sbjct: 449 TDPWRYFQRNPNADDSQLDPEADKTAQINAIKTLVADTVPQLLRQWQTAKTGREAAASLY 508 Query: 549 SISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 T + + + + E+ T + L + N ++ Sbjct: 509 QWLQTTGVIDQLNVWRQTANADGDLSRSQANEQAWDTFTQLLNDYATILGEADFNRDQFR 568 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + + T ++ I T RL + + G P + L+ Sbjct: 569 EQLAAGFASATYTQIPSTLDSVVISETGLVRLAKAKHVYVIGATNTAMPDVPNDSGVLNS 628 Query: 667 VMQSDLNLKTAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR--ENNIPTIAS 713 + L + + + + L + ++ + N AS Sbjct: 629 EERQLLAAQLPDDRFLPEQGPTTTLGDPFINYLGFMAASEKLTLSYPMQNTQENSENQAS 688 Query: 714 RWLQRLLVL---------------------------------GGTDFFDNLKKRGQCYLD 740 + ++L + + + Sbjct: 689 PYFRQLAQALQLTPATWAPAGLGTSLKAVLGSPRAMLSDFVRAAGEAQHQKLPLSRSWQG 748 Query: 741 WTRKLDYTTKQPHYKR---------------PKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 L TT P ++ P L + S S ++ + + Sbjct: 749 VLASLKQTTLAPLAQKLAGSLTYQNDPGRLDPTLAVQLYGRDMNVSVSRLETYYRNQFEY 808 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------TPEINHL 834 + + L L P F+ D G+LFH ++ + + + + + L Sbjct: 809 FLKYGLLLQPRPEFE--LSPADTGSLFHAVLDQYLTQLRDAGQTLADVTAADVAAAVPPL 866 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA----- 887 + I + H ++ L +++ ++ + + Sbjct: 867 VAAITRRPGYEILGSTHRMAYLTSRLSRLLIQVLTNMRQQQRRTGFRPMRTELQFGRIGD 926 Query: 888 -------KMAIESIG-IHLTGFADRIDLLKS---GFVDITDYK-TGDNPKKETAQKLIDP 935 + G +++ G DR+D+ + + DYK T A I Sbjct: 927 TRGLPGLSWPLPHGGRVNVRGKIDRLDVYRESDAQRFMVVDYKSTQHRFDDSDAYYGIAL 986 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 Q+ A+ A Y L+ D Sbjct: 987 QMLTYVEAMAN--VPADPPFVPAGALYFHLQDPKFKFSTDLDLDIDRLKAF 1035 >gi|332669679|ref|YP_004452687.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484] gi|332338717|gb|AEE45300.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484] Length = 1077 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 125/1030 (12%), Positives = 251/1030 (24%), Gaps = 131/1030 (12%) Query: 31 VENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT 90 +E L V + +RA +LR S P++++ V Sbjct: 62 LETVVAAVDAGLSPQDVLVVSAGRRAAADLRDRLAARLRTTSGR-PLVQTAPAVAFSVLR 120 Query: 91 ADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 + L ++ P V + L LA L+ ++ P +P Sbjct: 121 SRAALLGDVPPTLVGGADQDLLLAELLAGHAAGEGVPLR-----WPPHVPADVPTMRAFR 175 Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---SS 206 L D++ DL L W AA + R + Sbjct: 176 DELRDLLMRAAERGLTPADLADLGRRHERPEWETAARVYEEYLDVLVLRSATPDLGARLD 235 Query: 207 PVGYQIALMRAEAEHL------MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 P +A + +++ S ATARL+ + +GA +L Sbjct: 236 PAVVVEEAAQALVAWEDEVGDVPRPRWRLVVVDDHQESTSATARLLRVL--TADGARLLL 293 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + + D LG V Sbjct: 294 LADPDTAVQTFRGASPALVGRAPVAG--------------DGDGELGAATLVLGTVWRHG 339 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 V ++ + + + V + +EA +A LR Sbjct: 340 PAVREVTARVTERIGSVGAVQHRRAASALRPDPAAPPQVQAAVLPSAAQEAAFVAHTLRT 399 Query: 381 SLDENK---KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNA 436 + E+ + A++ ++ L + + + +PL L + Sbjct: 400 AHLEHGVGWDRMAVVARSGGQVTALRRALAGASVPVTVVGSDVPLREEPAVRPLLEAVRV 459 Query: 437 IFK--LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + D A A LV PL R E +A G + S + Sbjct: 460 VVGDAPLDPAAAARLVCSPLGGLDAVGLRRVRRALRAEELAAGGGRTSDVL--------- 510 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + ++ V + ++ LA +L P + S Sbjct: 511 LVEALEDVGRVASLPASVARPVARLAEVLAAGRRAAERP---GADAQTVLWSLWHASGLA 567 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + R +L + F + + + D + Sbjct: 568 EPWRRAALVGGVAGERADRDLDAVLALFRAAETFVDRMPRATAGA-----FADWLAAQDL 622 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + +L + +D +++ G+ +GVWP ++ L D+ Sbjct: 623 PSDSLAAAARRLAVPVLTPAGAAGQEWDVVVVAGVQDGVWPDLRLRDSLLGSQALVDVVA 682 Query: 675 KTAEKY---------------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL--- 716 A + + RH + ++ + + L Sbjct: 683 DRAVDGTDPGARAAQARAAVLADELRSFAVACSRARHRLVVTAVADADQQPSPFLDLVEP 742 Query: 717 ----------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 L + R Sbjct: 743 ADDETDHRRTTAPAAADLRGLVAELRGTLEHAVASGARPDPAVVRTLARLAREGVPGADP 802 Query: 755 KR--------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + + S S ++ D Sbjct: 803 AEWHGLADPTTDSPLWADDERVPVSPSRLETAQRCALRWALEAAGGT------AADSSGQ 856 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 GTL H I EL + E++ ++ + +++ Sbjct: 857 TLGTLVHAIAQELPTGTRTELAAELDRRWSELG---LGDGWPARATRRRADAMIDRLAGY 913 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-----SGF-VDITDYKT 920 Q + + V + + + G DR++ +G V + D KT Sbjct: 914 L-------QGAGAPLLVEGGFTLRTDRA--VVRGTVDRVERDPAAPDDAGTPVRVVDLKT 964 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC---RKVANLFYIRLKQKFKIDCITND 977 G + + ++PQL A+ G+F+++ A L Y+ Sbjct: 965 GSTVPSKAKAE-VNPQLGAYQLAVDGGAFAELPADARSTGAVLVYVGAGSNATERPQPAL 1023 Query: 978 KKKYSADELS 987 + + Sbjct: 1024 GGEDDGPSWA 1033 >gi|77413159|ref|ZP_00789358.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|77160777|gb|EAO71889.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1077 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++T DL L + L Sbjct: 97 FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 ++ L E + + + L K I I+ G T L+ ++ Sbjct: 150 IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ I+ A + + S + + + + + Sbjct: 210 SSRCQEIIIGAYASQKAYKANF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K + ++ + S D + + + E N+++ Sbjct: 264 SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306 Query: 370 EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + ++ D + + ++ I ++ Sbjct: 307 EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + L K + + A + + + + Sbjct: 367 VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAYISYADIKGPKKFFTDFV 426 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + K L R+ T + + P +++ I L + Sbjct: 427 VGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++S Q +E KT + + + K N E+ Sbjct: 475 LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + + + + + G+ + +PK +S Sbjct: 523 LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582 Query: 666 RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714 + + + F + + L+ T N S Sbjct: 583 DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642 Query: 715 WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741 +L L +G + K Q + Sbjct: 643 YLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEKQTFWSVA 702 Query: 742 TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R L + P E P S S + N+ Y + Sbjct: 703 VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYF 762 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L+ PD GT H + L+K + ++ E + + F+ Sbjct: 763 LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + I+ + + S + ++ I+ I + G DR Sbjct: 821 SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960 ID L G + + DYK+ +K QK + PQL A + Q + Sbjct: 879 IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ + + + K + D+L K+ + L L E+ F+++ + K ++ Sbjct: 935 MYLHM-----QEPKQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988 Query: 1021 QSE 1023 SE Sbjct: 989 YSE 991 >gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] Length = 1116 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 132/1072 (12%), Positives = 274/1072 (25%), Gaps = 166/1072 (15%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 F E A + + + LA++ P R + L + + Sbjct: 133 RAFREETAQAFVQKEIQQQDG-------DLAALLDLYPADRLARILVALIDD-------- 177 Query: 75 LPIIKSL-GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI----LIWRNKLPDIIKD 129 LP I +L G + + + LLE L + L D + Sbjct: 178 LPEILALPGGLAAPYEVSLGGEEAGKIEAEGALDALLESRDLAGPKSRAKLDALADQREA 237 Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWLLAA 185 ++ + A+ I D+++ ++ L L + W Sbjct: 238 IHQWIAAGEYSKASAALKPVSATGKIKDLVKEAKEALARLETLSLDGAGAEQARHWE--- 294 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIP 240 + L + + S + + K +++ + Sbjct: 295 NLLGRFRQALLDAAESREIYSFGYLSGRAVELLEKRPNVLFRYKSRFRYLMVDEFQDTNE 354 Query: 241 ATARLMSTVA----NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 RL+ ++ G + D + + + Sbjct: 355 EQKRLVYLLSGGSSRSLQGRNLFVVGDAKQSIYRFRGADVSVFRQVRDAIGETGGDNIVM 414 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 E L + RS V ++ P S + + K + Sbjct: 415 DDNFRSAPEIIEACNTLFDDLLGTDSRSDVTAQPLHPHQPSSRKPVFAVLKKGECTLEEC 474 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINI 413 + E +A A+R ++ A++ +L+R+ + LT GI Sbjct: 475 Q----------QAEGRYVAQAIRQLREDTGLPYGQMAILLPAIHLSRQYEEALTALGIKS 524 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 +S G SLL + A+A ++ P A + Sbjct: 525 QVSDGKGFYERQEVVDWISLLTFLLNPRKDWALAGFLRSPYAGISDRQLTDLL------- 577 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + L L + + Sbjct: 578 --------------------------------------KPWPELSLWESLRQSLEEPFVT 599 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L + T S+ + V + + L +L K Sbjct: 600 LSRKLEALHRTALFQSLPELMDAFQEAF-AVEPTLLAQRGGREKLANFRKLRALGVKGAM 658 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + ++ ++++ RL E+ + + I+ +S+ L F + L L++ Sbjct: 659 EDGDTARDFLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKGLEFPAVFLPDLSKKN 718 Query: 654 WP-----------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + N + V K + + + Sbjct: 719 HNDTLGIQFLPGQGFGVRVPDAQGNLLETSVYTRLKGEKARLERAEKQRQLYVAMTRAEK 778 Query: 697 LIYTRSLRENNIPTIASRW--------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD-- 746 +Y ++ E+ + LQR+ G ++ + Sbjct: 779 YLYLINVDESKEGSRPPDPDKEKWGQSLQRVFAPEGPHGDQMDWEKLDVAEILENQETGQ 838 Query: 747 ----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + P + S S + + P + Y + I Sbjct: 839 PGAGEAFVLDPAVYDRGRPVTVPRDLELSASALLEYDTCPRSFYYHYFRHMPGIDPETVG 898 Query: 803 -----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFEKENLPPHIDII 855 D GT H ++ L ++ + E ++ + F +E Sbjct: 899 EGSHRISAIDLGTYVHRVLELLQEEPEEEALAEALEVLDRTGAEKKVFAREG-------- 950 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTGFADRIDLLKSGF 912 K+ + + + +E G DR+ L G Sbjct: 951 -----RKLVEQYCASPLYQELKDLPAQAERDFALPLFQLEQGRAVFQGSVDRLVTLPDGR 1005 Query: 913 VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + I DYKTG P ++ QL++ A A + +KVA L+ + Sbjct: 1006 LGIVDYKTGHPPTDGEEKQGYTRQLTIYALAAE----ILYPGQKVAWARLHFLQDCSSWE 1061 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 +++ E+ LK L+E + + EQ F + ++ Y Sbjct: 1062 LKDREQE--------EEKLKALVENLLIWDKEEQ-FPAR----KEGCQWCPY 1100 >gi|228906865|ref|ZP_04070734.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200] gi|228852869|gb|EEM97654.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200] Length = 1171 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 124/1069 (11%), Positives = 291/1069 (27%), Gaps = 175/1069 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL---------GDV---VEEKFTADLLLSYNLNPPV 103 +E++ E + K+ + +P + GDV + + + L++ + V Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSGDVRGSIRAQVFSFSRLAWKVLQEV 79 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 RL + + K+ + KD LS+ A ++L +I + Sbjct: 80 GGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRYN 134 Query: 164 KKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMR 216 +++ + + L++ + L+ Y L+ Sbjct: 135 VTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGRYL-DSEDYLQLLVE 193 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + I I G P ++ + + +D N + Sbjct: 194 KLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGAKVTITLTIDEKTLAQPVNELDL 252 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + ++ I+ E L R + + L Sbjct: 253 FYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAHY 298 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALIT 393 E + + V + A N R E +A +R + + + A++ Sbjct: 299 ---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVLL 349 Query: 394 AD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 350 RNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKT 409 Query: 453 PLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----KS 490 L K R A + R ++ D + + Sbjct: 410 ELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSER 469 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNST 544 + ++I ++ P + + + + + + + + L + + Sbjct: 470 EMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEES 529 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAI 603 L +D ++ + + + S + ++ + + + Sbjct: 530 GDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQV 589 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 +I + I + + ++ +L+ + + G T + Sbjct: 590 LIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTLL 649 Query: 664 LSRVMQSDLNLKTAE---------------------------------------KYIGQA 684 + + + + +E + Sbjct: 650 EEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLS 709 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + T + + +++ +R G DF+ ++ +W +K Sbjct: 710 RSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQK 762 Query: 745 LDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 Y+ L S S ++ YA +A+ L L Sbjct: 763 SSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERDI 822 Query: 799 FKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENL 848 F D D G LFH + ++ K ++ L+ + I +++ L Sbjct: 823 F--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL 880 Query: 849 PPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--- 898 + +I S + E S + + +P M ++ + L Sbjct: 881 LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNG 940 Query: 899 -----TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS- 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 941 VKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAQ 1000 Query: 949 --FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1001 TWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|77407954|ref|ZP_00784704.1| exonuclease RexB [Streptococcus agalactiae COH1] gi|77173412|gb|EAO76531.1| exonuclease RexB [Streptococcus agalactiae COH1] Length = 1077 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 120/963 (12%), Positives = 261/963 (27%), Gaps = 138/963 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++T DL L + L Sbjct: 97 FEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYL-------HSPEKFEDLLA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 ++ L E + + + L K I I+ G T L+ ++ Sbjct: 150 IFLVVSDLLREGEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ I+ + + S + + + + + Sbjct: 210 SSRCQEIIIGAYASQKAYKTNF------TNGNIYSAGVDFLRYLATTFQTKPEFILSKWE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 K + ++ + S D + + + E N+++ Sbjct: 264 SKSGFEMISKNIEGKHDFTNSSHILDDT-----------------AKDCITIWECINQKD 306 Query: 370 EAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + ++ D + + ++ I ++ Sbjct: 307 EVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + L K + G + A + + + + Sbjct: 367 VHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQDDLDYFEAYISYADIKGPKKFFTDFV 426 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + K L R+ T + + P +++ I L + Sbjct: 427 VGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG------------IKTLNQFMFFLTQVG 474 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++S Q +E KT + + + K N E+ Sbjct: 475 LSDNLSRLVGQMSENEQEK------------HQEVWKTFTDILEQFQTIFGQEKLNLDEF 522 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + + + + + G+ + +PK +S Sbjct: 523 LSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS 582 Query: 666 RVMQS-------DLNLKTAEKYIGQAAHDFEMAN---GTRH-LIYTRSLRENNIPTIASR 714 + + + F + + L+ T N S Sbjct: 583 DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQMSP 642 Query: 715 WLQRLLVLGGT--------------------------------DFFDNLKKRGQC-YLDW 741 +L L +G + K Q + Sbjct: 643 YLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVA 702 Query: 742 TRKLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R L + P E P S S + N+ Y + Sbjct: 703 VRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYF 762 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L+ PD GT H + L+K + ++ E + + F+ Sbjct: 763 LQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQEDVFK 820 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + I+ + + S + ++ I+ I + G DR Sbjct: 821 SLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERFELMID-NTIKINGIIDR 878 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AALKAGSFSQIDCRKVANL 960 ID L G + + DYK+ +K QK + PQL A + Q + Sbjct: 879 IDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPP--IFGA 934 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 Y+ + + + K + D+L K+ + L L E+ F+++ + K ++ Sbjct: 935 MYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSEAEKEFLANGKYHLKDSL 988 Query: 1021 QSE 1023 SE Sbjct: 989 YSE 991 >gi|282600916|ref|ZP_05980119.2| putative ATP-dependent nuclease subunit B [Subdoligranulum variabile DSM 15176] gi|282570837|gb|EFB76372.1| putative ATP-dependent nuclease subunit B [Subdoligranulum variabile DSM 15176] Length = 1094 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 106/986 (10%), Positives = 257/986 (26%), Gaps = 134/986 (13%) Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 S + E + + R L + R + +++ + Sbjct: 46 YSFTSLAETLLRRYGGAAVQ---TLDEAGRALLVRRAVDSLLDQVVYYNRQ--------- 93 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + + A I+ +++ + L A L + + Sbjct: 94 ----RRSAAFCEKAAQTIEELKSAGVTPQALAAYACAPGAD--RDKLQELSLIYGAYEGL 147 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 L + A P Q + + I L++ + A V Sbjct: 148 LAQT-AMDPGDRQQLAAQYLDAAFFA--GRAVFIDEFDTFNAPKRALLAAML---PVADV 201 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 L C P + S + + L ++ + + + Sbjct: 202 TVCLCCDGPEDHEGGMGLFSGAKAVAGS---------LRRMAADAGVPVHTETLTDDPRH 252 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 ++ P + R D + I E + Sbjct: 253 ADTPVLAELNLLLADPTYTPDRTVDPDQPAIVCYGAASRQAEAKAVAAEIAARARAGM-- 310 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + + ++ E I + T + + ++L+ Sbjct: 311 -----PYHRMAVICRDAAQYLGPLRYEFRLQNIPLFCDEATTPENTAPARAVHAVLDLAR 365 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + L+K L ++ ++ + + Sbjct: 366 SGVSSRTVLRLLKTGLVNLPERQQTALENYA-----------YTWSLKAADWRAPFTRSA 414 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-TKLT 557 R EE + V L++ I + + + + L + + T Sbjct: 415 AGYADVERAEDVRTREEAEAARVFLMERIQKFLPRVKNAGAAALTKQVYLFLQSLGAEDT 474 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + L + R E + L +++ + + ++ ++ T L+ Sbjct: 475 LNALAETLRGQGRMPEADEVLREWNVVMGLLNQLAQLLGEEELPPADYAELFTLLLRTTD 534 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS-----RVMQSDL 672 + + ++ + RL D + + GL EG +PK L+ +++ Sbjct: 535 MGHIPQSLDSVILTTAGRMRLPETDAVFVVGLLEGEFPKTPGDQGLLTHADRDAMIRQGA 594 Query: 673 NLKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-------PTIASRWLQRLLVL 722 L E + + F A L + + R L ++ Sbjct: 595 ELPDCFENKVLREGVCFYKAMTAARSFLWLSWPGAAHAEDDTPASSALAPVRRLLQVPFA 654 Query: 723 GGTDFF---------------DNLKKRGQCYLDWTRKLDYTTKQPHYKR----------- 756 G + R L+ P Sbjct: 655 GPSTAELGASPAAALDILGVISQQPGREGEGEALRAALEDAEGTPQSAPGYEAVRRAREK 714 Query: 757 PKPFPPLEAQPRTY-------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 +P S + ++ P+ + + +L+ K + G Sbjct: 715 AEPAVRDTGALEKLLGPGLRVSPTRFEKYQTCPFGYFMQFVLRAAPRQ--KAELAPNISG 772 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHS- 866 TL H ++ ++++ ++ +++ + P I + ++L +I + Sbjct: 773 TLTHWVLENALRRQGAAFKDLTAEELQALVEELVAEYTQANLPGITVRMQYLIERIRRNL 832 Query: 867 -----FLEHEEKIQSSIEKIFVNIPAK--------------MAI---ESIGIHLTGFADR 904 F++ + + QS + + + + + + + G DR Sbjct: 833 VGLLGFIQRDLQ-QSGFQPVAFELRIDDRPGEDPEAPRIDPVELKDGAGHTVRIVGTVDR 891 Query: 905 IDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 +D + G + + DYKTG + + +D Q+ L L+ + ++ A + Sbjct: 892 VDAMPLGERTYLRVVDYKTGGKDFQLKEVYCGLDCQMLLYLFTLERNAGNKFPGATAAGV 951 Query: 961 FYIRLKQKFKIDCITNDKKKYSADEL 986 Y L + I + A E Sbjct: 952 EY--LLADPAPESIPRSEAGQDAAEA 975 >gi|229078428|ref|ZP_04210989.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2] gi|228704850|gb|EEL57275.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2] Length = 1166 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWKQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|206968209|ref|ZP_03229165.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134] gi|206737129|gb|EDZ54276.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134] Length = 1171 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 123/1070 (11%), Positives = 285/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L+ Y L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLV 192 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 193 EKLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + E + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 409 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIHAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINH------LMKQIIDSHFEKEN 847 F D D G LFH + +L+++ I L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECKHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|229095724|ref|ZP_04226703.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29] gi|228687557|gb|EEL41456.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29] Length = 1166 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 292/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEALKQRPRGKTILYLVPEQMTFQTQQALIESEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 N + + V + A N R E +A +R + + + A++ Sbjct: 293 YEARPNEKYYDE---------ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIM----DLK 489 L K + R + + R ++ D D++ Sbjct: 404 TELLYPLDVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIE 463 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847 F D D G LFH + + + + +N ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + Sbjct: 935 GVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|228951605|ref|ZP_04113709.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808066|gb|EEM54581.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 1166 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + E + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|218896176|ref|YP_002444587.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842] gi|251764580|sp|B7IL83|ADDB_BACC2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|218542167|gb|ACK94561.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842] Length = 1171 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 124/1070 (11%), Positives = 285/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 298 Y---------EARPNEKFNGQASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 L K + + E L + R + + + Sbjct: 409 TELLYPLDVRKETMREEMDKFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468 Query: 511 RLSEEDKELAVLLVD----HILQCITP-----------------------LVTYKTNKNS 543 R EE +V + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEVVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683 + + + + +E+ Sbjct: 649 LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINH------LMKQIIDSHFEKEN 847 F D D G LFH + +L+++ + I L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWSDLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QMWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|253732676|ref|ZP_04866841.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|253729287|gb|EES98016.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp. aureus TCH130] Length = 1158 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 113/967 (11%), Positives = 272/967 (28%), Gaps = 143/967 (14%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKY 194 L L S A ++ L + I + E L + ++ + + + + Sbjct: 107 LKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKIEDIALIYRE 166 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + +R+ N + + I I G ++ + + Sbjct: 167 FEQRI--QNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAK 224 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 ++ D H Q+S L ++ + Sbjct: 225 SVTIILTTD-------------------------GNHDQFS---LFRKPSEVLRHIEEIA 256 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAIS 373 N N R + D+++ + + + + + ++E+ REE Sbjct: 257 NELNISIERQYFKQLY--RFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINE 314 Query: 374 IAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 IA + + + + + A++ D + A L + I +I ++ ++ Sbjct: 315 IARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMI 374 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 SL+ I + L+K + + + + LE L +D + Sbjct: 375 RSLIEVIQSNWQVNPMLRLLKTDVLTASY--LKSAYLVDLLENFVLERGIYGKRWLDDEL 432 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC---ITPLVTYKTNKNSTCG 546 ++ + H R + E +L ++D IL ++ T K + Sbjct: 433 FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYE 492 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + +T + L+ ++ L + ++ + ++ Sbjct: 493 SMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILDDLVLVFGDETMSMERFL 551 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ + + I +++ N + L G+N+G P+ + ++ Sbjct: 552 EVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITD 611 Query: 667 VMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSL-RENNIPTIASRWL 716 + +L+ + + +A + + + ++ SL + S +L Sbjct: 612 EEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFL 671 Query: 717 QRLLVLGGTDFFDNLKKRG-------------------QCYLDWTRKLDYTTKQPHYKRP 757 ++ L N+ + + W + Sbjct: 672 NQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQV 731 Query: 758 KPFPPL-----------------------------EAQPRTYSFSEIKQLINDPYAVYAR 788 + S S + P+ YA Sbjct: 732 IRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYAS 791 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 LKL+ K + D G +FH+++ + ++ ++Q+ + E+ Sbjct: 792 HGLKLNER--TKYELQNFDLGDIFHSVLKYISERVNGDFKQLDLKKIRQLTNEALEEILP 849 Query: 849 --------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK---------- 888 I + L + S + Sbjct: 850 KVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELI 909 Query: 889 ----MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GDNP-KKETAQKLIDPQLS 938 + I I++ G DRID K+ V+I DYK+ G + Q+ Sbjct: 910 AQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMM 969 Query: 939 LEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + I K L Y + + + K + + +L +K Sbjct: 970 TYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDLIKKFK-- 1025 Query: 994 LIEIVTL 1000 L +V Sbjct: 1026 LSGLVNA 1032 >gi|228944849|ref|ZP_04107212.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814877|gb|EEM61135.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1171 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 111/1052 (10%), Positives = 278/1052 (26%), Gaps = 172/1052 (16%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + I+ + +I + S + + S + + L +++ + Sbjct: 48 QQALIDSEDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 104 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 + L S+ A ++L +I + +++ + + Sbjct: 105 DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 151 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + L + + L+ + + I Sbjct: 152 SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYID 209 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D N + + Sbjct: 210 GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI------ 263 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 ++ I+ E L R + + L N Sbjct: 264 ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE------ 309 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409 + V + A N R E +A +R + E + A++ + + ++ T + Sbjct: 310 ---ASVTIHTAANLRAEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDY 366 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466 I I P+S + S L I + A+ VK L K R Sbjct: 367 NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEM 426 Query: 467 ---------------AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPH 507 + + R ++ D + + + ++I ++ P Sbjct: 427 DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPV 486 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561 + + + + + + + + L + + L +D ++ + Sbjct: 487 IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVM 546 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620 + + + S + ++ + + + +I + Sbjct: 547 SLLDMFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATF 606 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 I + + ++ +L+ + + T + + + + + E Sbjct: 607 VIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKL 666 Query: 679 -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701 + + T + + Sbjct: 667 YISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSY 726 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760 +++ +R G DF+ ++ +W +K Y+ Sbjct: 727 VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 779 Query: 761 -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 L S S ++ YA +A+ L L F D D G LFH Sbjct: 780 STAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 837 Query: 816 ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864 + + + + +N ++ ++ + I +++ L + +I Sbjct: 838 LKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 897 Query: 865 --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908 S + E S + + +P M ++ + L G DR+D Sbjct: 898 FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAED 957 Query: 909 KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963 ++G + I DYK+ + Q+ + + + + A + Y Sbjct: 958 ENGTFLRIIDYKSSSKSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYF 1017 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + I K S E+ ++ LK Sbjct: 1018 HI-----HNPIVEVKGDASEAEIEKEILKKFK 1044 >gi|218902337|ref|YP_002450171.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820] gi|251764579|sp|B7JDU3|ADDB_BACC0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|218538203|gb|ACK90601.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820] Length = 1171 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 251/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETG-----------------------------------SCIKAN 601 + S + ++ + Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTL----FILGTLESRLLNFDTLILGGLNEGVWPKN 657 D ++ ++ TL F++ + +R + +E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 658 TAK-NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + R+ ++ + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVIDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|307243598|ref|ZP_07525743.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus stomatis DSM 17678] gi|306493039|gb|EFM65047.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus stomatis DSM 17678] Length = 1138 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 111/910 (12%), Positives = 266/910 (29%), Gaps = 104/910 (11%) Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 P ++ L + D + ++ + E+L + + + + + + + E Sbjct: 114 PQDSTGLVDIVKDALIELKQNKIGLEELEEMALRTDDHALKAKLEDIGLIYSSYEKLMEE 173 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + Q L+ + + + I I TG P L+ + + Sbjct: 174 DYIDTEDWIQ--LLSKKLAFYEEIREATIFIDEFTGFTPVQYDLIEDLIALSKNTYISLL 231 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 LD + ++ + H L +L D + + S ++ Sbjct: 232 LDLKSRLEVKTVFSKTHVTYLKLIEICNRH---KLKRLEDIEVVSQGYY-----SSPDLA 283 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 I+ P ++ ++ LIE +N +E +A + Sbjct: 284 YLEKNINLYRAKPFQGEV-----------------ENIDLIEFENIYKEVEYVAGKIVEL 326 Query: 382 LDENK---KKSALITADRNLARR-VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 +++ ++ + T D + V+ + +N + + T +LTS+LN Sbjct: 327 VNDKGYRYREITVATRDLDSYAYLVRAIFRDYKLNYFLDQKLEAKTNPILVLLTSILNMK 386 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + + ++ +K L + L + +RG++ D + L+ + Sbjct: 387 KENYSYNSVFNYLKSGLVGIDHEDVSLLENY--VIANGIRGSEWFKDWD--RPLIHNIED 442 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + + + E E + I+D + Sbjct: 443 DSEPDNTHINDIRKRVVEPIEKLHDQLKGKNSLRDISAHLYQFALDIGLPERINDLIEEF 502 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + + + +++E K +I ++ + G Sbjct: 503 K--------GQENHYKAKEYSQVWNIFVDVLDEMVEFLGDEKIGLERYIRLMEAELSGFE 554 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674 + + +F+ + + LIL G+NEGV+PK +S + L Sbjct: 555 LGIIPPSNDQVFVTSVDRMKNPDTKVLILMGVNEGVFPKTIGDQTLISDREKEKLGQMGI 614 Query: 675 --------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGT 725 KT ++ M + LI T + T+ S +++++ + Sbjct: 615 SFDSDVKSKTYDEVFLIYR---AMGIARKRLIITHPVSNFKGDTMKMSSLIKKIMKIFPG 671 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---------------Y 770 +N +L ++ + + Sbjct: 672 LKMENFLDSDLDTSHIYDQLVSLEEKKKVDNMIESSLNYDNRVSNLNVDQARILYGKGVF 731 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S S++++ P++ + L + D G H I+ E K + Sbjct: 732 SVSKLEKYAACPFSYFMNYGLAAKER--PINEFSPMDSGIYSHKILDEFSKSLAKIDLSW 789 Query: 831 -----------INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SS 877 ++ + + ++ S ++ +++ K Sbjct: 790 KDIDKGYIGMSVDQISQDLVKSRTGYILDSSEKYRYLYSRLNRSLVDSIDNMSKQVKKGD 849 Query: 878 IEKIFVNIPAK---------MAIES-IGIHLTGFADRIDLLKSGF---VDITDYK-TGDN 923 + + + ++ +++ G DR+D G V + DYK +G Sbjct: 850 FQPSGFELSFGFNSAYPPLNLDLDGSRKVNIIGKIDRLDTCIDGEREFVRVIDYKSSGKE 909 Query: 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + + QL + A+ + + A + Y K D S Sbjct: 910 IDLTSLYGGLQLQLFMYMNAVINA--DKTGKMEPAGVLYSNFSNKDLDMSGLADGLALSE 967 Query: 984 DELSEKSLKN 993 ++L +K LK Sbjct: 968 EDLDKKLLKE 977 >gi|229177655|ref|ZP_04305032.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W] gi|228605845|gb|EEK63289.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W] Length = 1166 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + E + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK+ + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKGLDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|296876207|ref|ZP_06900261.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC 15912] gi|296432918|gb|EFH18711.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC 15912] Length = 1088 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 123/982 (12%), Positives = 283/982 (28%), Gaps = 147/982 (14%) Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ E L I L E L + + + L + ++T + Sbjct: 72 LNQVFEEQPLDDIGLGMLFFKALSQMKEQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + DL L+ + L + +E LV+ S L + E HL + Sbjct: 132 FTDLELLEEAEKRED-------LLAIFEAVSEMLVQHRYESQSKIAFFLNQVEVGHLEEQ 184 Query: 226 TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 K I++ G T L+S + G ++ G+ + + + +S Sbjct: 185 LKDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YASEKAYRASFREGNLYQAS 240 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 L +L +++ + + S R + F + Sbjct: 241 VDF--------LLQLAKTFEVQPQYCGQAIEDSFSRITRMLEARYDFSQVEN-------- 284 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402 + + V L + + ++EE +A ++R L + + ++ D + Sbjct: 285 -----ELKEDDRTAVQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339 Query: 403 K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ I + + ++ SL + L+K L Sbjct: 340 LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + ++ + + H P +R + + E Sbjct: 393 ---------------YSDLTQEEVDAFEQYLRFAEVKGATKFHKPFTSNRQGKFNLEELN 437 Query: 522 LLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L +++ + P + L + ++ ++++ L+E Sbjct: 438 TLRQRVVEPLAPFFSQRKQKVTQLLTAFTEFLQEAQLSQNLQALIKDLALEEQE-----R 492 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 +++ K + ++ + +++ ++ + + + + Sbjct: 493 YDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687 L + GL + +PK LS + LN T E Q Sbjct: 553 EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVTSENLKKNRFV 612 Query: 688 FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737 L+ + N + S +L L + + + + Sbjct: 613 AVSLLNAATNQLVLSAPSLVNEMEDSVSPYLVELAKEPIAIEWTTKQAQASSDDIGTYRA 672 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762 L +L + Sbjct: 673 LLARVIELHQEEITSELSAEEASFWGVAVRVLRKKLAAEGIQIPQISTELKSSQLQSDTL 732 Query: 763 ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 E + T S S + + YA Y R +L L + PD G H I + Sbjct: 733 QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFEK 790 Query: 819 LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 ++K ++ + + ++ F++ R L + + + Q+ Sbjct: 791 VLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLLLDTAKTTGRVLAQ-QN 849 Query: 877 SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927 IE I + + + L G DRID L+ G + + DYK+ + Sbjct: 850 GIETIGEETLFGGSTHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ++ QL +A++ Q + + + Y+ + D + + KK + D+ Sbjct: 910 KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPVVDLKKTKTVDDAI 963 Query: 988 EKSLKNLIEIVTLLQNGEQPFI 1009 +++K+ + L + P++ Sbjct: 964 NQTMKS-QQYKGLFMAEQAPYL 984 >gi|218232937|ref|YP_002365925.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264] gi|251764581|sp|B7HGP8|ADDB_BACC4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|218160894|gb|ACK60886.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264] Length = 1171 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 409 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKVLDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|229149443|ref|ZP_04277679.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550] gi|228634085|gb|EEK90678.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550] Length = 1171 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + E + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEENYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 409 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|228932516|ref|ZP_04095397.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827206|gb|EEM72959.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 1166 Score = 168 bits (426), Expect = 4e-39, Method: Composition-based stats. Identities = 108/977 (11%), Positives = 251/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 316 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRYVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLDALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPF------------LSRVMQSDLNLKTAEKYIGQ 683 +L+ + + T + + + L E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 684 AA----------------------HDFEMA-----NGTRHLIYTRSLRENNIPTIASRWL 716 A+ +D T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|215447498|ref|ZP_03434250.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis T85] Length = 745 Score = 168 bits (426), Expect = 4e-39, Method: Composition-based stats. Identities = 96/753 (12%), Positives = 197/753 (26%), Gaps = 103/753 (13%) Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + + + + +I V + A + EA IA ALR + Sbjct: 12 RCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHL 71 Query: 384 ENKKKS---ALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFK 439 + A+I A R+ L G+ + A G PLS L ++L A Sbjct: 72 IDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATAD 131 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 D L+ P+ R R LV Sbjct: 132 GLDGDQALLLLTGPIGGVDPVSLRQLRRT------LQRARPGQTSRKFGDLLVEVLGGDA 185 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + R+ A L P +++ S + + Sbjct: 186 PPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDP-------RHTLWAAWQRSGLQRRWLA 238 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 ++ + +L ++ + A+ ++ +T L Sbjct: 239 ASEHGGAAAVQATRDLETVTALFDITDHYV-----SRTSGASLRGLVEHVTALQLPVVRP 293 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------------SRV 667 + + +L + +D +++ GL +G+WP + L ++ Sbjct: 294 EPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKD 353 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT-- 725 L E+ + A + + + + + S + + Sbjct: 354 ASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDG 413 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP------------------ 767 + L + Sbjct: 414 EPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPS 473 Query: 768 --------------------RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 T + S ++ L + P A R + + Sbjct: 474 EWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPSA 527 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 G++ H + E ++ ++ + + + H + + +F Sbjct: 528 VGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQAF 579 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGD 922 ++ + +S + K+ V + A+E I L G ADR++ +G + I D KTG Sbjct: 580 VQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGK 639 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 P + + QL++ A+ G D A L Y+ + D Sbjct: 640 TPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP---- 694 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L+ + +V L FI+ Sbjct: 695 ---LTPAARDEWRNLVRQLAAATAGPQFIARRN 724 >gi|229189330|ref|ZP_04316350.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876] gi|228594124|gb|EEK51923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876] Length = 1171 Score = 168 bits (426), Expect = 4e-39, Method: Composition-based stats. Identities = 128/1063 (12%), Positives = 286/1063 (26%), Gaps = 163/1063 (15%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L S + R Sbjct: 409 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDSWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA--- 659 + +I + I + + ++ +L+ + + G T Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 660 -KNPFLSRVMQSDLN-------LKTAEKYIGQAAHDF-----EMANGTRHLIYTRSLREN 706 + F+ M + + E+ A F M + L T + + Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDLFITNDVNDL 708 Query: 707 NIPTIASRW----------------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + S +R G DF+ ++ +W +K Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLS 768 Query: 751 QPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 Y+ L S S ++ YA +A+ L L F D Sbjct: 769 SLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLD 826 Query: 805 RTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 D G LFH + ++ K ++ L+ + I +++ L Sbjct: 827 APDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRH 886 Query: 855 IWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------T 899 + +I S + E S + + +P M ++ + L Sbjct: 887 FYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVV 946 Query: 900 GFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQI 952 G DR+D ++G + I DYK + + Q+ + + + + Sbjct: 947 GRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKG 1006 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A + Y + + I K S E+ ++ LK Sbjct: 1007 HAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|118476725|ref|YP_893876.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus thuringiensis str. Al Hakam] gi|251764578|sp|A0RAX6|ADDB_BACAH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|118415950|gb|ABK84369.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus thuringiensis str. Al Hakam] Length = 1171 Score = 168 bits (426), Expect = 4e-39, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ + + I G P ++ Sbjct: 167 QLLYDDFERALIGKYL-DSEDYLQLLVENLPQS-EYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|296501839|ref|YP_003663539.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171] gi|296322891|gb|ADH05819.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171] Length = 1171 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 122/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R A + R ++ D + + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPKVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1044 >gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812956|gb|AEB47128.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 1190 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 118/1063 (11%), Positives = 254/1063 (23%), Gaps = 143/1063 (13%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVV 85 TLVE + + + ++R +LR G++ P++++ Sbjct: 108 TLVEAVASRVAEGVDPERILVLTFSRRGAADLRHRIEARIAADGQRVLREPLVRTFPAYA 167 Query: 86 EEKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 ++ ++ L + L+ + + D P Sbjct: 168 FGLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEESGDD-----PVGWPEDLRPALR 222 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN- 203 A L D++ +L L + W AA FL+ R V Sbjct: 223 TRAFAAQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVANRG 282 Query: 204 --ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 A P A + + + + + + PA L+ TVA G Sbjct: 283 SVAYDPAELVRAATGMLRDDPELLAVERRRLAYVYVDELADTDPAQRDLLETVAG--GGL 340 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 ++ D T + ++ + L +RL Sbjct: 341 TLVAFADPDSSTYAFRGADPTGVTTFPHRFRTASGAPAAQVLLTTSYRCG----ERLLAA 396 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 S + R P + + + EA +A Sbjct: 397 SARLARRLR---------------GPAAHRRMRPVPGTPPGSMEIHTFRSATSEAAWLAH 441 Query: 377 ALRMSLD----ENKKKSALITADRNLARRVKLELTRFGIN-------------------- 412 ALR + + + L+ + ++ L G+ Sbjct: 442 ALREAHLLGGLPWARMAVLVRSTGRQLPTLRRALHAAGVPTVVHGEDLPLHLQPAVAPLL 501 Query: 413 -----------IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 +D A + L + + + +A+A + P + Sbjct: 502 LLLRCALEPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELIVEA 561 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 +E + ++ + R + W++ E A+ Sbjct: 562 LRDPAELAGVERRWAEPAQTVAGLLAVARETAARPGATAEDVLWAVWRASGLAELWSAAL 621 Query: 522 L----------------------LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 +D ++ + + + + Sbjct: 622 TRGPSVAGEGDLARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARTEVFLDHVLGQELP 681 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + L K L + + + ++ + + Sbjct: 682 ADTLAPTADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLVDVLA 741 Query: 620 PKIEKSSTLFILGTLESRLLNFD----TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + + + T+ L S LL+ + + + + A + Sbjct: 742 GRADGAGTVATLVGQTSALLDEERRLFHVAVTRARRRLLVSAVASASVGGDDHDEQPSRF 801 Query: 676 TAEKYIGQAAHDFE-----------------------------MANGTRHLIYTRSLREN 706 E G D A G+R L +R R Sbjct: 802 LYELGPGDTPTDEAPTASGDPEPLPAGIETSGTEPPGSETSTSEAGGSRTLPVSRPPRAL 861 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPL 763 +P + + L+ L RP Sbjct: 862 TLPALVAELRTALVDPAAPLARRQAAAAELARLGAAGVSGAHPDDWWGLRPLSDDRPLVD 921 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 E +P + S ++ + R G L H Sbjct: 922 EGEPVRVTPSGMESALRCSLRWLLERHGGSTPASA------AQGVGNLVHAA-----AML 970 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + + L++ + E + R + L + I Sbjct: 971 AEDARADRSALLEYVAARFDAIELAARWMVGPERARAEAMVDKLLRWLAANPRRLLAIEH 1030 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 ++ + L G DR+++ + G + + D KTG + + + PQL AA Sbjct: 1031 EFAVRLDDPHRPVDLVGRVDRLEVDEDGRLVVIDLKTGKSTTVTEREVVEHPQLGAYQAA 1090 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 ++AG+F++ + ++L + + E Sbjct: 1091 VEAGAFAEFGD-ESGGAALVQLGTGARDAREQSQPPATDGPEA 1132 >gi|228899818|ref|ZP_04064064.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222] gi|228859837|gb|EEN04251.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222] Length = 1166 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 284/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E + L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKIIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683 + + + + +E+ Sbjct: 644 LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|228913816|ref|ZP_04077441.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845755|gb|EEM90781.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1171 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 111/1052 (10%), Positives = 277/1052 (26%), Gaps = 172/1052 (16%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + I+ + +I + S + + S + + L +++ + Sbjct: 48 QQALIDSEDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 104 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 + L S+ A ++L +I + +++ + + Sbjct: 105 DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 151 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + L + + L+ + + I Sbjct: 152 SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYID 209 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D N + + Sbjct: 210 GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI------ 263 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 ++ I+ E L R + + L N Sbjct: 264 ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEMHYEARPNKKFHGE------ 309 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409 + V + A N R E +A +R + E + A++ + + ++ T + Sbjct: 310 ---ASVTIHTAANLRAEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDY 366 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466 I I P+S + S L I + A+ VK L K R Sbjct: 367 NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEM 426 Query: 467 ---------------AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPH 507 + + R ++ D + + + ++I ++ P Sbjct: 427 DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPV 486 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561 + + + + + + + + L + + L +D ++ + Sbjct: 487 IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVM 546 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620 + + S + ++ + + + +I + Sbjct: 547 SLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATF 606 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 I + + ++ +L+ + + T + + + + + E Sbjct: 607 VIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKL 666 Query: 679 -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701 + + T + + Sbjct: 667 YISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSY 726 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760 +++ +R G DF+ ++ +W +K Y+ Sbjct: 727 VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 779 Query: 761 -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 L S S ++ YA +A+ L L F D D G LFH Sbjct: 780 STAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 837 Query: 816 ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864 + + + + +N ++ ++ + I +++ L + +I Sbjct: 838 LKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 897 Query: 865 --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908 S + E S + + +P M ++ + L G DR+D Sbjct: 898 FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAED 957 Query: 909 KSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963 ++G + I DYK + + Q+ + + + + A + Y Sbjct: 958 ENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYF 1017 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + I K S E+ ++ LK Sbjct: 1018 HI-----HNPIVEVKGDASEAEIEKEILKKFK 1044 >gi|229068795|ref|ZP_04202091.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185] gi|228714303|gb|EEL66182.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185] Length = 1166 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSLSPQELEIVRQLMICGARVTITLTIDEKALAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFVIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] Length = 1103 Score = 168 bits (425), Expect = 5e-39, Method: Composition-based stats. Identities = 119/1030 (11%), Positives = 257/1030 (24%), Gaps = 178/1030 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILP-----IIKS-------------LGDVVEE 87 V T++A EL + P I + L + Sbjct: 66 RVLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRIDTNNDRHTTADTPPALSALARP 125 Query: 88 ------KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + A L+ + L RLL A + + + + +DL + +S Sbjct: 126 TISTYNSYAASLVTEHGLRIGREPGARLLTEASIWAMVSDIVDHWQEDLDTDYAVSTM-- 183 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHA------LKNEKYGMWWLLAADFLK------ 189 + LA LAD + + + + L L L Sbjct: 184 TDAVVTLAGELADHLLTVPEAATQLDHLLESLADLPLAGRSLAPSVAKLGKQLATKRRLL 243 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATAR 244 + + + +H + +++ + A + Sbjct: 244 DLVSEYHRVKRHSESMDFSDQVVLAAELARDHPFVADTERRRFAVVLLDEYQDTSYAQIQ 303 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L++ + +G V D + W + + S+A L Sbjct: 304 LLTALFG--DGHPVTAVGDPNQSIYGWRGASASGLTRFPRDFPRPNGTPASIASLSTSWR 361 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + ++S + + L V + Sbjct: 362 ND-----------------AQILSAAHRIALPLASASALPLPTLSTRPGAGTGSVTVGYY 404 Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 + ++EA IA +A++ R ++ L G+ +++ L T Sbjct: 405 LSAQDEAQGIADFFTRHFVPGMTTAAVLCRARKQFPLLEETLRNAGLPVEVVGLGGLLHT 464 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L S+L + + ++ L+ P G + + A EL + + Sbjct: 465 PEIRDLVSMLEVVHDPSRGDSLMRLLTGPRFHLGAHDIHTL-GVWARELSSRAHGYSGPP 523 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA----VLLVDHILQCITPLVTYKTN 540 L+ +R P E A + + ++ + Sbjct: 524 RGALREAADERSIVDALAQLPPRSWQGHHGETFSEAGYERLTQLSALIDALRQQTYLALP 583 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + ++ ++ + + W S+ + + Sbjct: 584 EFVDATERALGLDVEVALRAAHRHAETGTTDPSDPWGRAHLDAFRSVVTDFVHQAVHPTL 643 Query: 601 -NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + W+D G + ++ ++ L +D + + L++GV+P Sbjct: 644 GALLAWLDDARDRERGLDRPTGHLDPHAIHLITVHAAKGLEWDLVAVPALSDGVFPSTAT 703 Query: 660 KNPFLS-------------------RVMQSDLNLKTAEKYIGQAAHD------------- 687 P L+L A+ A Sbjct: 704 TTPRGPTDSGWTSHLGALPFSLRGDAPDLPHLSLADADHDAEIARRLTEFTAQCGHYQVA 763 Query: 688 ------FEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + R + R T S +L LL + G D + + G Sbjct: 764 EERRLAYVAYTRARTALLVTGAWWRTGKTATPPSPFLTELLDIDGVQIADLVTEPGDDNP 823 Query: 740 DWTRK--------------------------------------------LDYTTKQPHYK 755 L +Q Sbjct: 824 HPPDGDTAVWPQSLVDDITKRAADLVMSTRHNGRPILDHIGPVQVHGVDLAQRARQVLNV 883 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + +P P S S + +L D + + ++ ++ RGT FH Sbjct: 884 QQRPRGSSVIFPDHVSVSGLVELSADREGFLTQYQRPIP-----RQPSPQSRRGTTFHLW 938 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + + + ++++ D H L + + ++ Sbjct: 939 VEQFYGHTPLFDMDDLDNTSDS--DDHGTDRTLDELKATFEQSRWARL------------ 984 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLI 933 + + I G+ + D + G V + D+KTG P + Q+ Sbjct: 985 ---TPKELEADIDVVIA--GVVIRARIDAVFDDPDRPGGVIVVDWKTGRAPTTDADQRHR 1039 Query: 934 DPQLSLEAAA 943 + QL++ A Sbjct: 1040 NVQLAVYRLA 1049 >gi|229090183|ref|ZP_04221431.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42] gi|228693119|gb|EEL46832.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42] Length = 1171 Score = 168 bits (425), Expect = 5e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQRLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|75760178|ref|ZP_00740236.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492342|gb|EAO55500.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 1171 Score = 168 bits (425), Expect = 5e-39, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 284/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E + L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKIIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 409 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAEKYI---------------------------------------GQ 683 + + + + +E+ Sbjct: 649 LEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGQAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|229120764|ref|ZP_04250007.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201] gi|228662769|gb|EEL18366.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201] Length = 1166 Score = 168 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 316 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|30019292|ref|NP_830923.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579] gi|81435561|sp|Q81GQ0|ADDB_BACCR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|29894835|gb|AAP08124.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579] Length = 1171 Score = 168 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R A + R ++ D + + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVRATFIIGVNEGVIPVAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFISNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + ++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQHLLT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K + E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044 >gi|239617416|ref|YP_002940738.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia TBF 19.5.1] gi|239506247|gb|ACR79734.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia TBF 19.5.1] Length = 1030 Score = 168 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 107/885 (12%), Positives = 245/885 (27%), Gaps = 137/885 (15%) Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 A + + + DII+ ++ + ++ + A +E ++ ++R Sbjct: 103 DLAQSPTFVEYVFDIINDVKEND-GFDKIFAQDDE--------ITLLMRSLYSKLSDRFN 153 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++L E + I G PA + + + + Sbjct: 154 SNLIYDTFDAYLSLAELSDELHPGEFGETLFIDGFHDFSPAVKAFLEGIVPIFSKVFITA 213 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + T S + Sbjct: 214 PEDANRCELFAEARTIIDFVEEREGKIDSNG--------------------------EII 247 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 +S+ LP + T E I + +V +I A + E I+ ++ Sbjct: 248 TSEKRFLSEQHLPKNLEPFLKTFFSE---QKITQSCENVEVIVASDIFNEVEYISREIKR 304 Query: 381 SLDENKKK--SALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 ++ + A++ +D + + L +GI PL + +L Sbjct: 305 TIKSGYEPGDIAIVASDFSRYEKLFSERLDEYGIPFRSEGDEPLLESRAVKMLLLPFETA 364 Query: 438 FKLNDFMAIATLVKHPLAKFGFP---------------EKYLSRAKNALELVALRGNKNS 482 I + + + +E R + Sbjct: 365 VNGFKPEKIVAMGDFGYGGSKLDTKFFESIAIQARLIYDYPTLTLQKRVESWEERLERYK 424 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + V + + + ++ + D E ++ I Q + P + Sbjct: 425 ELVQRKIRAVEEISDEEFIEQEISGYREVILRVD-EEIEPAIERIFQVLAPFRSLSRRDC 483 Query: 543 S--TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI-- 598 S+ ++ + V E L E E L F+ ++ + Sbjct: 484 RIYREYFYEWSELIRIEERYRKLVEESEEEPFRKLEGERELLALKRFFNDVLPALEELLL 543 Query: 599 -----KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE-- 651 + + ++ + ++ + K + + I L +R G N+ Sbjct: 544 FLGKERISPADYHRYLMLILRNTSFKSSRAIENRVEIQSLLNARFSRKKIKFFVGFNDGY 603 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPT 710 + F ++ +L ++ + + + L ++ + P Sbjct: 604 YPMIRMNPLYSFTQYDEKAPKDLLLVKEKQQKLNLYLAVTRTSDRLYFSYPESTIDGEPL 663 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + S +LQ ++ G +K G+ D +L+ + K ++ Sbjct: 664 LPSAYLQDVIKSAGVTPERVGQKEGRKV-DIIPELETVMSEKELKIAVANYFNTGHWKSL 722 Query: 771 --------------------------------------SFSEIKQLINDPYAVYARRILK 792 SFS ++ P++ Y ILK Sbjct: 723 KDRFGMGDLEKVLQGFNREFTWIISNRKKIEDHIGKVFSFSRLQSYHKCPFSFYLAYILK 782 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + + + G ++HN++ + K + M++ I + Sbjct: 783 IQTPEEGLFELTPLEEGNVYHNVLKDYFSKSALDWEKSLEENMRKYIRH------DSELV 836 Query: 853 DIIWRHLFHKISHSFLE-----HEEKIQSSIEKIFVNIPAKM-------AIESIGIHLTG 900 ++ +++ K++ E + + M +E ++ G Sbjct: 837 FKFEYERLRRVIAEYIQIKESKKLPKVEGEFEPTYFELGFGMGNQKPVKVLEDA--YIRG 894 Query: 901 FADRIDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 DRID+ K G + I DYK G++ +KE QL L + A Sbjct: 895 KIDRIDVDKDTGAMYIMDYKRGNSGEKE--------QLILYSIAA 931 >gi|228957510|ref|ZP_04119262.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802102|gb|EEM48967.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 1171 Score = 168 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 290/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R A + R ++ D + + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K + E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044 >gi|229042982|ref|ZP_04190713.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676] gi|228726322|gb|EEL77548.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676] Length = 1166 Score = 168 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 119/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K + E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1039 >gi|229126549|ref|ZP_04255563.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4] gi|228656938|gb|EEL12762.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4] Length = 1171 Score = 168 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 291/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R A + R ++ D + + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVRATFIIGVNEGVIPVAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K + E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDATEAEIEKEILKKFK 1044 >gi|229183443|ref|ZP_04310668.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1] gi|228600027|gb|EEK57622.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1] Length = 1171 Score = 168 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|313902119|ref|ZP_07835530.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM 13965] gi|313467637|gb|EFR63140.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM 13965] Length = 1217 Score = 168 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 106/988 (10%), Positives = 239/988 (24%), Gaps = 133/988 (13%) Query: 45 ASVTIYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 ++ + VP T + Q L + TG+ + S + + P Sbjct: 33 PALVLLVPEQATFQMEQALLAAVRHRTGRAGFARARVASFQRLAWWVQQETGGATR---P 89 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 VS + + L L L+ ++L + A+ + + + Sbjct: 90 AVSELGKRLILRALLSREAHRLQLFHR-------------VADRPGFIDRMVTTLAELAA 136 Query: 162 EEKKWEDLHALKNEKYGM----WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 E L + + L + + + L + + PV ++ R Sbjct: 137 FGIDAEALRRQREAWLAEGREGLLAVKLHDLALLLEAYQGYLEDEGLADPVHALDSVARR 196 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + G TG P R++ + + V LD Sbjct: 197 LGD-CAWLRGARIWVDGFTGFTPGELRVLGALLAVADRVEVTLCLDPAEAAWAVRGQPPG 255 Query: 278 STNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 ++ HP + A+ L L ++ + Sbjct: 256 GPGAGATPHGSHDPDAATLFHPTWQTARQLLELARRQRVTVEPAVTLPPEGAGQRLPR-- 313 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---- 386 ++ + ++ A + R E + A + E Sbjct: 314 -FRNPALAHLERELFRFPGRRFTGAPDGITVVAAPDRRSEVAAAAREMLRLAREEGYRFR 372 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 ++ + GI + I P+ ++ + + + + A+ Sbjct: 373 DMVVIVRDLDAYHDLISAACAEHGIPLFIDRRRPVGHHPLVELVRAAVEVVAADWPYEAV 432 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALR-GNKNSYDIMDLKSLVLDRIATQKNNTHV 505 +K L + + + + + A Sbjct: 433 FRYLKTDLVPVARGAVDRLENYVLAFGIRGSLWYRGQPWRWRRRFALDEEEADDPAWQAE 492 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 +R+ EE + V KT + L D + + Sbjct: 493 LEAINRIREEATAALRNFHHRVAAARRQPVPVKTLAEAVHQLLLDLDVPGQILRWSEE-A 551 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + + L + + + +++ ++ ++G V Sbjct: 552 ERAGDLEAAQEHLQVWNGIGDLLEQAATSLPDLPLTLADFLRVLEAGMEGLRVGLIPPGL 611 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAE 678 + SR + L G + +P+ + + + +L Sbjct: 612 DQVVAGSVERSRHPSARVAFLLGATDDAFPRRIDDDAIFTDGEREELAQAGLELNPPGRI 671 Query: 679 KYIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTD----------- 726 + + + H + R L + L + I WL R L + Sbjct: 672 RALHEQYHAYVALTRARDRLWVSYPLGDEEGRAITPAWLTRRLRVLFPALAVTPAVVEGP 731 Query: 727 ----------------------------------------FFDNLKKRGQCYLDWTRKLD 746 + R + + Sbjct: 732 EGVATASQAVDQLVRMLGRQAGSPAAGEPAAAGWRILYQWAVTEPEARPRALQALQSLVH 791 Query: 747 ----YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 Q ++ P S S +++L P+ +A L L + Sbjct: 792 SNQVEPLGQDLARQLYARPRGPEWEVRTSVSRLERLAACPFQHFAAHGLGLKEREISR-- 849 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHL 859 D G ++H ++ L ++ + ++Q++ E ++ Sbjct: 850 LDAPQLGRIYHAALSLLARRVWERGLDWADLDEEALEQLVGEAVEALRPRLAEELATSTA 909 Query: 860 FHKISHSFLEH----------EEKIQSSIEKIFVNIPAKMAIESIG-----------IHL 898 + K + Q + V + + + L Sbjct: 910 YQKHLLATARRTLVKTASRLAHHARQGRFRPVAVEVDFGPESPVLPAAPWRVGPGEHLAL 969 Query: 899 TGFADRIDL--LKSGFV--DITDYKTGD 922 G DRID SG + DYK+ Sbjct: 970 RGRIDRIDAASSPSGRWFLRVIDYKSSS 997 >gi|196037563|ref|ZP_03104874.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99] gi|196031805|gb|EDX70401.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99] Length = 1171 Score = 168 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH ++ + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAVLKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|242242256|ref|ZP_04796701.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis W23144] gi|242234272|gb|EES36584.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis W23144] Length = 1156 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 137/1041 (13%), Positives = 292/1041 (28%), Gaps = 149/1041 (14%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G + E + L ++ L A L ++ + + D L L S Sbjct: 59 GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLV 200 A L++ LA+ I + E L L + + + + K R+ Sbjct: 113 QAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIDNHSMQTRTKHKLEDISLIYKQLESRMN 172 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++ Q + +K K + I G R++ + H VL Sbjct: 173 GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + ++ ++ +H + +L L+ + + Sbjct: 231 TTD----------GSHHPFSLFRKSSEVLSHLEDIANRLNINLNKTYFNTFYRYKNDDLK 280 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR- 379 + + F P + V + E+ + REE +A + Sbjct: 281 NLENGFDALQFTPKHHQ-------------------NHVEIFESSSMREEINEVARRILK 321 Query: 380 --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 D + A++ D + A + L + I +I ++ +L SLL I Sbjct: 322 DVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEVI 381 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 A+ L K + F + LE L +D +D+ + Sbjct: 382 RSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQFS 439 Query: 498 TQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISDW 553 +H L +E +L ++D +L + T K S +L + Sbjct: 440 RMGRKSHQLTEEHQALYKEVIKLKTNVIDKVLYFEQAMNEAHTVKDYATSFYESLEYFEL 499 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 +T + L + ++ L + ++ + +++D+ + Sbjct: 500 PSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIGL 558 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + + + I +++ N + + G+N+G+ P+ + + ++ + + Sbjct: 559 EQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYVE 618 Query: 674 L-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR----- 718 T++ A +A + ++ SL N+ S +L + Sbjct: 619 DNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKELF 678 Query: 719 -------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPKPFPPLEAQ 766 L L ++ Q + L + Sbjct: 679 YDLEITNLQDLHEAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAYIAIRDDDQL 738 Query: 767 PRTY-------------------------------SFSEIKQLINDPYAVYARRILKLDF 795 + S S + P+ YA L+L+ Sbjct: 739 NQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLNE 798 Query: 796 IPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----EN 847 K + D G +FH+++ + N +T I L K+ ++ K Sbjct: 799 R--TKYELQNFDLGDIFHSVLKYISDRIYGNFKNLDTKNIQSLTKEALELILPKVQFNLL 856 Query: 848 LPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK--------------MAI 891 I + L+ + S + + Sbjct: 857 NSSAYYKYLSKKIGSIVETTLKALKYQGDYSKFVPQRFETGFRKSPKNKDELVAQPLITD 916 Query: 892 ESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL- 944 + I I++ G DRID I DYK + + Q+ + Sbjct: 917 QGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVL 976 Query: 945 ---KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSEKSL-KNLIEIVT 999 + + I K L Y + + + K + + + + L+ Sbjct: 977 QNKERLGLTDI--VKPGGLLYFHVHEPRIKFKSWADIDEDQFQKDYIKNFKMSGLLNRDQ 1034 Query: 1000 LLQNGEQPFISHLRLSEKSNI 1020 + + F L S+I Sbjct: 1035 EVLD---AFDIRLEPKYNSDI 1052 >gi|229114674|ref|ZP_04244088.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3] gi|228668739|gb|EEL24167.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3] Length = 1166 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 122/1070 (11%), Positives = 293/1070 (27%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIESEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 N + + V + A N R E +A +R + + + A++ Sbjct: 293 YEARPNEKYYDE---------ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIM----DLK 489 L K + R + + R ++ D D++ Sbjct: 404 TELLYPLNVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIE 463 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847 F D D G LFH + + + + +N ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + Sbjct: 935 GVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|196036226|ref|ZP_03103625.1| ATP-dependent nuclease, subunit B [Bacillus cereus W] gi|228926279|ref|ZP_04089353.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|195991201|gb|EDX55170.1| ATP-dependent nuclease, subunit B [Bacillus cereus W] gi|228833376|gb|EEM78939.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 1171 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|225863092|ref|YP_002748470.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102] gi|225789875|gb|ACO30092.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102] Length = 1171 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|160945991|ref|ZP_02093217.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii M21/2] gi|158443722|gb|EDP20727.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii M21/2] Length = 1160 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 113/969 (11%), Positives = 249/969 (25%), Gaps = 133/969 (13%) Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 A+ ID +++ + L L + L + + + L P Sbjct: 160 AETIDELKSAGLSGQQLQELARDCGTE--SAKLGELALIFQGYESLLAGTG-MDPADRLE 216 Query: 213 ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + + I RLM + V D Sbjct: 217 LAADRLEAALARDELPDFLREREVFIDEFDTFNAPKKRLMGAMLAALPAVTVALCED--- 273 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + L +L G Sbjct: 274 --------GAPMQPGDLELFSGAKQVAAQLRQLARK----------NGAQVAAPELLRRD 315 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + P + + P A + E A + L Sbjct: 316 LRHKDAPGLAALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMRQGVRCG 375 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 K + + V+ E I + + ++ + +LL + + + Sbjct: 376 KIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGADMTEQL 435 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L K L PE S + ++ + Sbjct: 436 TVLAKTGLCDLTEPEVCALENY---------AYTWSPNAAAWRAEFTKSPRGFGDAELTE 486 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 ++ A ++ + L + N+ + ++ K Q Sbjct: 487 E-----DTQNLTRAENARKKLVTAVDTLRGKVRSANAEQISRALYFCLKELGAEGQQAVQ 541 Query: 567 DEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 E E + L ++ E+ D+ + L+ + Sbjct: 542 VEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFSLLLRSSDLGHI 601 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-----SDLNLKT 676 + + + + RL D + + GL EG +P A++ L+ + ++L Sbjct: 602 PQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCTPAESGLLTHADRDLLMAKQIDLPD 661 Query: 677 -AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQR--------------- 718 E + + F A L + + A + Sbjct: 662 CFENRVVREQVCFYKALTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLA 721 Query: 719 ------LLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPFPPLE------ 764 L VLGG L++ + + +R + PP + Sbjct: 722 ATPADGLDVLGGGWPLTELERASLTEALRAPGEGVQAPRGLALLQRMEQDPPRQVQDLPT 781 Query: 765 -----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + S S++++ Y + + +L L + + GTL H ++ Sbjct: 782 LETLLGRRLHISPSQLEKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMA 839 Query: 820 IKKRINKNTP-------------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISH 865 + + P + L ++D + + K Sbjct: 840 LDPHPGADNPCAGLRPFLELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMT 899 Query: 866 SFLEHEE--KIQSSIEKIFVNIP---AKMAIES--------IGIHLTGFADRIDL--LKS 910 S L + + QS + + + + A+ + L G DR D Sbjct: 900 SLLCYLRDEQNQSQFKPVACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDD 959 Query: 911 GF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 G V + DYKTG + +D Q+ L +L + + + A + Y L Sbjct: 960 GTRWVRVVDYKTGSKKLDLKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLY--LLA 1017 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQ 1021 + ++ + + + +++ +I + E + + + + + Sbjct: 1018 DPAPQTLPREQAARAVEYQLDGLVRDEQKIFDAMDADETGKYLPFGYRNGAPSPYQKDKR 1077 Query: 1022 SEYDHLARV 1030 ++ L+R+ Sbjct: 1078 ADSAKLSRI 1086 >gi|225019256|ref|ZP_03708448.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum DSM 5476] gi|224947887|gb|EEG29096.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum DSM 5476] Length = 1119 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 113/925 (12%), Positives = 248/925 (26%), Gaps = 125/925 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A+ + D ++ + + + + L + Sbjct: 113 GFAELMLKTADELKNSAISPASFENAVALFPEGNLRDKSREISLIYTTYDGLLNKTYR-D 171 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 P+ + + I ++ + + L Sbjct: 172 PLDDLSRAVE-KVRGTGFFEGYDIYFDEFLSFTAVQRGMIEEMMQAADLTFAL------- 223 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 W+ TT SL + L + E L Sbjct: 224 ---CWDREDGGLLFEPCRKTT------RSLLNMARRLGVGAERPVHLTE----------- 263 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLD 383 +IL N+I Q V ++ A NE E ++ L Sbjct: 264 --NRLFVHPELAHLERNILRNRIEPYQGTCEHVKVLLAPNEYGEVDAVLSEVWELVQRHG 321 Query: 384 ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 ++ ALIT D + V L ++GI + + + +SLL A D Sbjct: 322 YRFREIALITRDLESYQGVLESALRKYGIPYFMDETVSVEHDPLIRFASSLLAAADGGKD 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L +FG + + N + + V Sbjct: 382 ISPVLALLKCGLTRFGLTQISYFENYLYTWN-ITKDQLNQPFTHNPRGFVD-------RE 433 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 T + L++E + ++ + Y + L ++D V L Sbjct: 434 TEQDGQVTALADEVRAAVAEVISLLRGAEQTARGYGSALFEALHRLGVADVLNQRVERLN 493 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 E + L + + + ++ + ++ G + Sbjct: 494 ----GEEKFPEAEEQARLWDVLIDILEVLAHSTGEVRLTLRRYRELFDLSAKGYDLGSIP 549 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---- 678 + + I + + N + + G EG++P + + + + +L E Sbjct: 550 QSLDAVMIGSAERTIIGNSRAVFVFGAGEGIFPLSPQFDGVFTDSDREELKKLGVELSKP 609 Query: 679 --KYIGQAAHDFEMANGTRHLIYTRSLR---ENNIPTIASRWLQRLLVLGG--------- 724 I + + + S R P S + ++ + G Sbjct: 610 IGDRILEERFSAYKSLSSPREHLVVSARLADIAGSPLYPSEVITQITKMFGSGVVTYTAD 669 Query: 725 ---------------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + + + Y D R+LD + ++ Sbjct: 670 LGLADFCRTKESAFLQLAFHYRSRDGQAEALRRYFAQDEEYGDRLRRLDAAAQTGGFRLY 729 Query: 758 KPFPPLE--AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S ++++ + + +K K + + G + H++ Sbjct: 730 DRKNAERLFGRQLAVSPTQVENYYKCGFLFFCANGMKAYPRG--KANLNPLSLGKVTHHV 787 Query: 816 ITELIKKRI--NKNTPEINHLMKQIID---SHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 + +L+ EI ++Q++D F + + + S +E Sbjct: 788 LEQLLSTPSFYQMEYEEIAQAVEQLLDGYIDQFMGGKQDKTARFLQLYR--NTARSLVEL 845 Query: 871 EEKIQSSI-----EKIFVN---------IPAKMAI-ESIGIHLTGFADRID-LLKSGF-- 912 IQ + P + + + + L G DR+D K G Sbjct: 846 ARNIQKEFAHCRFQPAAFELEIGDKGAVQPITLPLSDGCSVKLIGEIDRVDSYQKDGKTY 905 Query: 913 VDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + + DYK+G ++ Q+ L +L ++ A + Y+ F Sbjct: 906 IRVVDYKSGAGRTFDLSEIYYGLNLQMLLYLFSLWEQGKAKFGETVPAGVLYLPAGGAFG 965 Query: 971 IDCITNDKKKYSADELSEKSLKNLI 995 IT + A++ +++ K Sbjct: 966 SFGITKREG--DAEDAAKEIQKGFR 988 >gi|42780318|ref|NP_977565.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987] gi|81410612|sp|Q73C24|ADDB_BACC1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|42736237|gb|AAS40173.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987] Length = 1171 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 108/977 (11%), Positives = 259/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + LD N + + ++ I+ E Sbjct: 225 LMICGARVTITLTLDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|255657914|ref|ZP_05403323.1| ATP-dependent nuclease subunit B [Mitsuokella multacida DSM 20544] gi|260850106|gb|EEX70113.1| ATP-dependent nuclease subunit B [Mitsuokella multacida DSM 20544] Length = 1210 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 107/998 (10%), Positives = 256/998 (25%), Gaps = 137/998 (13%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + R L L ++++ + + L + ++L+D+I + Sbjct: 88 PRISEVGRRLLLRKILVHHQKE-----------KDLQVFARAVRQRGFTESLSDVIQEFK 136 Query: 161 TEEKKWEDLHALKNEKYGMWWLLA--ADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 + + L +E LA + + + + + ++ + + Sbjct: 137 SYRLTTDVLREAADELAKGNERLAGKLQEMALLTDEFAAEM--QGKANDAEDMMNQLAEA 194 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + G P ++ + + + + + Sbjct: 195 IPEAPLIKGAEVWLDGFIFFNPQEMAVLRALI-MTAAKVHVALPMTGLAEGDGRVRLDLP 253 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N+ + + L R + M + F P Sbjct: 254 ENLQET---------ALFNRPYRTLQAIRRMAREELAYRGPMPIHLLAEQHRFAPQSILH 304 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395 ++ + Q V L+EA N R E S A + + + ++ L+ D Sbjct: 305 GMEQELFR-YGGSAQSEEQGVQLVEAANRRLEVESAAADILRLVRDEGWHYREIGLLVRD 363 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + +GI A P + ++ S + + + + + ++ Sbjct: 364 GEAYGDLVRLVFEDYGIPFFEDAKRPSIHHPLAELMRSAIEVVARDWRYETVFRCLRTGF 423 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + R + D Q + + Sbjct: 424 FPPVREDIDRLENYVLEFGIRGRKRWQQQEPWDWHRRYSLDDGEQVDEDTASTLAL--ID 481 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + +V + + + + + L + + V E R Sbjct: 482 SLRRQSVEALSALEDALRAADDVRGYTLALYDFLVQLEVPARLQEWAE-VAEREGRLADA 540 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + +LF +++E K ++ +++ +D + + + Sbjct: 541 AEHRQLWDDSMALFDQLVEVSGTEKMTLSDYEAVLSDGLDALQISLIPPGLDYVTLASFD 600 Query: 635 ESRLLNFDTLILGGLNEGVWPKN-TAKNPFLSRVMQSDLNLKT----------------A 677 ++ L N L + G + P+ + F Sbjct: 601 QNSLDNMRGLYILGADAATMPRRVREQGIFSDADRLHIAETLAAFQKEGEEEHTISRGGH 660 Query: 678 EKYIGQAAHDFEMANGTRH-LIYTRSLRENNI-PTIASRWLQRLLVLGGTDF-------- 727 EK G+ + R L + +L + S ++++ L Sbjct: 661 EKSFGEKFLLYRGFTEARDYLWISYALADAEGNGLQPSPLVKKMRELFPKAAFLSIPLET 720 Query: 728 --------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR----------- 768 + + R R + + Sbjct: 721 VRRDDDLLLAAPRPALSGLANALRGEREHQAMQPCWRDVYNWAMGQKEWQRPLQLALAGL 780 Query: 769 ------------------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 S ++ ++ P+A +A LKL + Sbjct: 781 FARSGAGRIPKELAEQIFAKGTVLRGSVTQFEKFRQCPFAHFAAYGLKLQERR--EYQFR 838 Query: 805 RTDRGTLFHNIITEL-----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 D G L H ++ E + + + + + + E L + Sbjct: 839 SMDLGQLLHAVLKEYGSIVKRDYANRWQDVPEEKRAALCEELVNTLAPRLQSEILLSRDN 898 Query: 854 IIWR-HLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK----------MAIESI-GIHLT 899 K + + H S+ + F + + + Sbjct: 899 YRHLKKRIEKTAEQAVGHLSAWAAVSAFQPAFFEEAFGHPDDEVHLKPLPLGDGYALSFK 958 Query: 900 GFADRIDLLK-SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 G DR+DL + + + I DYKTG + QL + + + + R Sbjct: 959 GQIDRLDLHECAPYYLILDYKTGHVAINLFEVYYGLRLQLLVYMMVGRELLKEKGEKRLP 1018 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A + Y L + + ++KY+ EL ++ L Sbjct: 1019 AGILYAFL-----QNPLLQTRQKYTQAELEKRINAELR 1051 >gi|229154808|ref|ZP_04282923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342] gi|228628756|gb|EEK85468.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342] Length = 1166 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGGMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R S + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSQSLAHLEAHYEARPNEKFHGE---------ASVTIRTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + + + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|290580137|ref|YP_003484529.1| putative exonuclease [Streptococcus mutans NN2025] gi|254997036|dbj|BAH87637.1| putative exonuclease [Streptococcus mutans NN2025] Length = 1080 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 116/961 (12%), Positives = 260/961 (27%), Gaps = 135/961 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++ +L+ L + + + L Sbjct: 97 FSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAE-------KQEDLIK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249 L + + + + HL + I++ G T L+ + Sbjct: 150 IFTEVETILSAGHFDNQSKIAFFAQQIKFGHLDTALQDLTIVVDGFTRFSAEEENLIGLL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G ++ G S + Q SL + + Sbjct: 210 HE--KGVDIIIGTYISQKAY-------------RSTFSNGNVYQASLDFIRGLAGKFQTK 254 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + + + + + D SD + ++K V + + N++E Sbjct: 255 PEYVVSKQEALPAFTKLSQLFESRHDFSDSQLVLTDKDK--------EHVTIWDVINQKE 306 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLH 426 E +A ++R L E + ++ ++ ++ I +S+ Sbjct: 307 EVEHVAKSIRRKLYEGHRYKDILVLLGDVDAYKLQIGKIFDKYEIPYYFGKAESMSSHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L G + Sbjct: 367 VHFVDSLERVKRYNFRAEDVMNLLKSGL----------------------YGKIRQNQLD 404 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--T 544 L+ V+ K + D + L ++ + LV + K Sbjct: 405 KLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQAQKGDSIL 464 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + LT + + + E+ KT + + + K + Sbjct: 465 QKLTNFLEAISLTNNFSKLIQGVSDTEQEK--NEQVWKTFTVILEQFHTIFGQEKMKLAD 522 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ ++ + + + + + + G+ + +PK + Sbjct: 523 FLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLI 582 Query: 665 SRVMQSDLNLKTAE-------KYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIAS 713 S ++ +N T + F T+ L+ T N S Sbjct: 583 SDEERAKINEATPNNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDNTS 642 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQC---------------------------------YLD 740 +L L +G + + Sbjct: 643 SYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSV 702 Query: 741 WTRKLDYTTKQPHYKRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAV 785 R L + P+ QP S S + N+ Y Sbjct: 703 AVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLY 762 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843 + + +L L + PD + GT H + +++ + + + I + F Sbjct: 763 FLQYVLGLQELETIH--PDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + I+ S + + ++ ++ + + G D Sbjct: 821 HLVYNEDEESRYALGILEDIARSTATILKGDNPVQAESE-EEAFELMLDQA-VKIRGVID 878 Query: 904 RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK-VANLF 961 RID L G + I DYK+ N + + PQL AL+ S ++ + Sbjct: 879 RIDRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALR--SCKNLNETDKIFGAM 936 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y+ + + T+ S +++ E KNL L E+ +++ + + Sbjct: 937 YLHM-----QEPKTDLANMKSIEKIPETVHKNL-SYKGLFLEDEKAHLANGKYHLHDAVY 990 Query: 1022 S 1022 S Sbjct: 991 S 991 >gi|260220996|emb|CBA29119.1| hypothetical protein Csp_A10550 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 714 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 108/726 (14%), Positives = 211/726 (29%), Gaps = 93/726 (12%) Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389 + R D + + + L + +EA A + ++ Sbjct: 63 AHWGSKAELFRLDDAEPHAGTTLNLASDHLHLHACADAEDEAQRAAACAIGHVAADRYPL 122 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 AL+++DR L RRV+ L GI + G LST+ + L +LL A A+ Sbjct: 123 ALVSSDRALTRRVRAMLESAGIAMRDENGWKLSTSRAGAALMALLRAAVWNASTDAVLNA 182 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 K + VL + V W+ Sbjct: 183 FKQ---------------------------------APAFAEVLQALEQALRKEQVRDWR 209 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE- 568 + + + L V + G+ + W + LQ E Sbjct: 210 HVSGCKPVKDSEALS-------AMCVRIDQVRTELSGSRPLPAWLARMQSVLQTCGWWEA 262 Query: 569 ----HRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEWIDIITRLIDGETVKPKI 622 L ++++ ++ + + + + + ++++ + +P Sbjct: 263 LQADEAGAMALEVLRITPPEPQVWAEYVDAALWAGTRMDLSAFSSWVNQVLEAHSFQPAY 322 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + IL + F ++L G +E + + ++ L + + + Sbjct: 323 PDEEQVVILPMSQMLARPFAAVVLAGCDEVRLNPSPEPAGIWTPAQRAALGMPSRAELES 382 Query: 683 QAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + A + + RS + AS +Q L + G R + Sbjct: 383 RLRASWRQALQAPAVEVLWRSSDDTGEHIAASPLVQWLRLQPGVAEALASDPRTSRQVMP 442 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 L P R S S + L PY +A R L L + + Sbjct: 443 ATVL-----------PPQPHGDRIPVRQLSASAYEDLRTCPYRFFALRQLGLKTVDELES 491 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHL---MKQIIDSHFEKENLPPHIDIIWRH 858 D D+ D G H ++ E + + ++ +S LP + + Sbjct: 492 DVDKRDFGLWLHAVLQEFHSALQTEPLSGLEQRGVLLETCANSVTASMGLPDGEFLPFAA 551 Query: 859 LFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 + + +L+ EK + A+ + L G DR D G + D Sbjct: 552 AWPNVREGYLQWLEKHDAQGWTYASGETAHTQAV--GSVMLMGRIDRTDTGTDGATMVLD 609 Query: 918 YKTGDNPKKETAQK----LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 YKT P +T ++ L D Q++ AA L YI + ++ Sbjct: 610 YKT--EPSAKTKERVKNPLEDTQIAFYAALL---------PHDTLQAAYINVGERDGTMP 658 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY---DHLARV 1030 + + D L E ++ + + + +Y L R Sbjct: 659 VEQKDIVLARDALVEGIASDMTRLAA----------GEPLPALGDGVACDYCQARGLCRK 708 Query: 1031 AEWREE 1036 W Sbjct: 709 DFWSPS 714 >gi|322435330|ref|YP_004217542.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9] gi|321163057|gb|ADW68762.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9] Length = 896 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 124/873 (14%), Positives = 259/873 (29%), Gaps = 94/873 (10%) Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E + + + +++ + L+ T+ ++ S P + L S + Sbjct: 61 PEIHPLDSWLTTLWHRLTVTGQADRLLLNPTQEHVLWRQIITSDPEVSGLRSPDSLASMA 120 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 A L H + + + L + + L Sbjct: 121 ASAWRTLCLHNGRTRLPGSATSTDTRAFERWAQT----FQRLCLRQAYLSPAQLPELLTA 176 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 N + ++ F + D L + + L A + R E ++ A Sbjct: 177 TVNLPIPPAGLLLLDFDTLLPAHQTLFDTLSPVAHHQTTTPAPPHLHAAADPRSELLTAA 236 Query: 376 IALRMSLDENKK-KSALITADRNLARRVKLEL--------------TRFGINIDISAGIP 420 + +L N + + A++ D R + + + G P Sbjct: 237 NWIAQTLSANPESRIAVVVPDLESRRPEITRIFAQTLSPELQRFPTPATPTPFEFALGQP 296 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 LS T ++ +LL I+TL+ P + + Sbjct: 297 LSHTALAATALNLLTFTLSPLPLDTISTLLLSPYLITPIEQLAAA--------------- 341 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + + L + + + + L L+ L ++T Sbjct: 342 ------EFDAFTLRQTRLLRPELTLEALLALLPATLPSLSARLRAL----------HRTA 385 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 K+ S + W+ L++ L +L F+ + SS ++ Sbjct: 386 KSDLPTQQSHAAWSDTFRALLESAGWTRTAPLDSLAFQTH-RRFSSALDELATLDFDGTH 444 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 I +T+ ++ + ILG LE + FD L + WP + Sbjct: 445 PTAAAALATFTRILDQTIFAPESHNAPIQILGPLEIGAVPFDALWFLSAGDLTWPNPPST 504 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAA---HDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 +P + +Q LN+ ++ QAA +A+ +I++ +++ + S + Sbjct: 505 SPLIPWQLQRALNIPGSDPTQSQAAAQTLTTRIAHSASQVIFSYAVQVDEAHQRPSPSVT 564 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 L + + Q Y + PPL P + ++ Sbjct: 565 ALKLTPLKALEAHTTLAPQPYDIIPDQT-------------TLPPLPDVPLRGGATILQL 611 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------TPEI 831 + +A + L D DRG L H ++ EL ++ P Sbjct: 612 QAACAFRAFAEQRLFSSEPQPRTLGLDPRDRGNLVHKVMEELWSCIHDQGELKALTLPAR 671 Query: 832 NHLMKQIIDSHFEKEN------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + L+ I+ ++ + R + +L+ E + + Sbjct: 672 DSLLADCINHALQRTDRLAQSPWDEAYLGTQRTRLLTLLRPWLDLEAARPAFAVRAR--E 729 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA- 943 A + + L+ DR+D +G + I DYKTG P + + PQL L A Sbjct: 730 QADRHAQLGPLTLSLRMDRVDETDAG-LVILDYKTGVAAPSDWLSDRPDAPQLPLYAVLT 788 Query: 944 ------LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + +F+ + +L + T+ + ++ E + L ++ Sbjct: 789 DQPEEPVAGIAFAILRAGD--DLCLKGYATGDDVFGKTSRMNFPTMEDQLEDWRRVLTQL 846 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 T G+ + K+ L R+ Sbjct: 847 ATSFAEGDTAVLPKSYP--KTCAYCAQRILCRL 877 >gi|114775530|ref|ZP_01451098.1| hypothetical protein SPV1_04358 [Mariprofundus ferrooxydans PV-1] gi|114553641|gb|EAU56022.1| hypothetical protein SPV1_04358 [Mariprofundus ferrooxydans PV-1] Length = 881 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 105/880 (11%), Positives = 229/880 (26%), Gaps = 94/880 (10%) Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 W + + +L A I + + + + Sbjct: 57 WQRWLNGMARTEPEIPVAYNQLQAIELWEQIIRADLPQGAASASLRGLAVHADSAYALMC 116 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ++ +A A + + ++ LL Sbjct: 117 EYRMDVNGLAGAGEEAEAFGRWQQQMQQQCRKNGRMLVADTAAALLPGIASAAACSHILL 176 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D D + + + I + + + V Sbjct: 177 DGFDG---YTPMQQALLLALQQAGVNIESVQTTRCEEPLMQLVCCRDAEAEYRHLAGAVK 233 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + A+N + + R+ + + T + A V L + G Sbjct: 234 TMLAENPNRRIAIVTASRRVDEAKLGRILDE-TLLQQQALPVGACLQAVHMP-----GPA 287 Query: 421 LSTTLHSSILTSLLNAIFK-LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 LS+ S L LL+ + F + L+ P K E+ +AL R Sbjct: 288 LSSMPLISQLLHLLSLAGRSGAGFTDFSRLLFSPGLKGYQDERLARAGLDALLRKHNRHY 347 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + ++ + L + L Sbjct: 348 VSFKSLLASEQL---------------------------------HELKAFADILKQLLL 374 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 K + + D + + L S + C Sbjct: 375 WKTGRQTAGEWVRAVHGLMQTCGFLQSDPTEARSAIEVRQLNAFRDCLSSLVSMECVCKT 434 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ ++ ++ + P + + ++ + +D G+++ P+ Sbjct: 435 LEWSRFLSLLRQVSSETQL-PLPAELPQVSVMPLSAIAGMRYDAAFAIGMDDEALPEPAM 493 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSLRENNIPTIASRWL 716 P L MQ NL A AA F ++ + L + + S L Sbjct: 494 VQPLLPLSMQRKYNLPGATAESAFAASTFLWQQLQHAAPILCLSYACEGEQRELSVSPLL 553 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 L T + Y P + + S IK Sbjct: 554 AGLSESIATVEPVET---------------ELAETESYTDTPAVPLEQNESVYGGASIIK 598 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 P+ +A L + + + D ++G+L H + + +K + + + Sbjct: 599 NQSACPFRAFATHRLAIVPLDETEPGIDAAEKGSLIHRALEFIWRKL---GSQQALLALD 655 Query: 837 QIIDSHF-----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 Q ++ ++ + + +LE E + + + Sbjct: 656 QAGRETLIAAAVEAAFASDRTSVSGAARGFEQQRMAGVLAEWLEIE-QRRPPFTVVKCEQ 714 Query: 886 PAKMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLE 940 P ++ + + + ADRID G + DYKTG K +++ +PQL L Sbjct: 715 PYRLQLPQAAATQFSVNIKADRIDKDAEGHQILIDYKTGQGQSIGKWMGERMSEPQLPLY 774 Query: 941 AAALKAGSFSQIDCRKV--ANLFYIRLKQK-----FKIDCITNDKKKYSADELSEKSLKN 993 A A G + +V ++ + L + C ++ ++ E + Sbjct: 775 AVAAGLGEHDAVAFARVRSGDMDFEGLSGENTGIHGIAVCDGKSRRPEDWLQVLETWQND 834 Query: 994 LIEIVTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032 + + +G S + + + + R+ E Sbjct: 835 INALAAEFVSG----RSEVAPVDASACQYCALEAVCRIDE 870 >gi|38233328|ref|NP_939095.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199588|emb|CAE49244.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 1060 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 138/1056 (13%), Positives = 287/1056 (27%), Gaps = 174/1056 (16%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP--IIK 79 + LL T+ E R ++P + + ++ + LR+ S P +++ Sbjct: 77 VSTLLMDTVAERIR-RGVSPES---IIVVAASRESAARLRAGIAHRIADGSYTSPASLVR 132 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 S+ + + L ++ ++ + L+ + + Sbjct: 133 SVHSLAFALLRSLSDEQLRL---ITGAEQDAVIRELLQGHVD------NPSLAAMWPAEA 183 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 I A+ + D + + EDL L W A F++ + Sbjct: 184 RQALGLIGFAREVRDFLLRSGERGLEPEDLEELGARYGRPMWASAGKFMREYQQ------ 237 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 ++ G T S+ A+ + + Sbjct: 238 ------------------------------VMNLGGTHSLNASELVSKLL---------- 257 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 IP W TI + H A+LL L + G+ Sbjct: 258 ---CFDIPDMGWRTI----------IIDDAQHLDPQSAQLLQALMRYTDFTVIAGDPQQS 304 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 ++ + L + K + +++ +A LR Sbjct: 305 VFHFRGASPEFLLHAPVDHELTLYSSFRQPTVEAKVLG--------STGDQSEFVADLLR 356 Query: 380 MSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLN 435 S A+I ++ L G+ + + I LS S L + Sbjct: 357 RSHLLEGIRWNDMAVIVRSTADIPSLRRALLSAGVPVQEDPSDIILSEQRIVSALILAVR 416 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 AI++ + L P+ L R L + N I ++ L+ + Sbjct: 417 AIYQELSAQELEELALGPIGG--ADTVTLRRLFRGLRKAEMHAGGNRRAIEIMRELIDPK 474 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + ++ E +VD I + + + S + Sbjct: 475 ESEEQTQLREQVEAVLTDREL-----AVVDKIRAVLVRGAQPGSVEEILWEIWDASALSS 529 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 T + + +L + + + T S I + + Sbjct: 530 HLQTVSLRGGVRGAQADRDLDAVMALFDAAGDWVERRPTASITSFVR----HIAEQELPT 585 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 ++ + + I+ S + T+I+ G+ EG WP + DL Sbjct: 586 GVRDRRLATADAVRIVTAHGSLGQQWHTVIVAGVQEGTWPSLQETGTLFGQEDLIDLIDS 645 Query: 676 TAEKYIGQAA-----------HDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLG 723 E + GT ++ T E++ SR+LQ + Sbjct: 646 GIEPNTYISRSAEKLKEEKRLFHVARTRGTHRVVITAVESPESDTAAEPSRFLQGIAESK 705 Query: 724 GTDFFDNLKKR---------GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + + + R L + +R P + R + + Sbjct: 706 VQGPTTDPETASVQSEIDTETVHLDQYVRLLSVPSIVAELRRELANPDSPQRRREQAARQ 765 Query: 775 IKQLI------NDPYAVY--------------------------ARRILKLDFIPHFKKD 802 + +L P + +L+ + + Sbjct: 766 LARLALHQVPGARPEQWWGYGGPSETTSLDISKVSPSLIENALLCPLRARLERLVEEENT 825 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHIDIIWRHLFH 861 P +GTL H + + + E L+ Q ++ + PH W + Sbjct: 826 PIHMLKGTLAHAFAEAVGR---GVDPNEAEQLVTQAFEALLDAPAWSLPHHMSQWSTMLQ 882 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 +++H + + ++ + + G+ L G DR++ +G I D+KTG Sbjct: 883 RLAHWIDVSHAQRELVGVEVP-----VNVVVAPGVELRGRIDRLERNDAGEFHIVDFKTG 937 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSF------------SQIDCRKVANLFYIRLKQKF 969 + + + QL AL G ++ V + Sbjct: 938 KQAVTKD-EANENKQLLAYQLALHRGKLMQRNGEPAINTTAEQPGLTVDQAVLVYPATDT 996 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 K ++ A+EL EK L ++ L + Sbjct: 997 KTVTT-REQAPKDAEEL-EKFSATLPALLESLSGPQ 1030 >gi|196044124|ref|ZP_03111360.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108] gi|301052777|ref|YP_003790988.1| ATP-dependent nuclease subunit B [Bacillus anthracis CI] gi|196024763|gb|EDX63434.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108] gi|300374946|gb|ADK03850.1| ATP-dependent nuclease, subunit B [Bacillus cereus biovar anthracis str. CI] Length = 1171 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + + I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEVYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEMHYEARPNEKFHGE---------ASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYKTGD 922 + + +P M ++ + L G DR+D ++G + I DYK+ Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KSLDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|228984310|ref|ZP_04144491.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775427|gb|EEM23812.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1166 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 118/1070 (11%), Positives = 287/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 E++ E + + + +P + G + + F+ L++ + Sbjct: 15 HEVQEELKQRPRGGTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLYIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQLMVCGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALI 392 N + V + A N R E +A +R + + + A++ Sbjct: 293 YEARPNEKFHGE---------ASVTIRTAANLRAEVEGVAREIRRLVADENYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R + + R ++ D + + Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWISEDPWMYRRYRSLDDTNGMITDSE 463 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + T + Sbjct: 584 VLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + E Sbjct: 644 LEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNT----------PEINHLMKQIIDSHFEKEN 847 F D D G LFH + + + + +N ++ ++ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 HTWMKKGGTASPAGVLYFHI-----HNPIVEVKGDASEAEIEKEILKKFK 1039 >gi|24379892|ref|NP_721847.1| putative exonuclease RexB [Streptococcus mutans UA159] gi|81451162|sp|Q8DT75|ADDB_STRMU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|24377869|gb|AAN59153.1|AE014982_2 putative exonuclease RexB [Streptococcus mutans UA159] Length = 1080 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 120/960 (12%), Positives = 258/960 (26%), Gaps = 133/960 (13%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L D+ ++ +L+ L + + + L Sbjct: 97 FSDQDLRVFGRLKQDAHFINQLVDLYKELKASNLTVLELNQLNSAE-------KQEDLIK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249 L + + + + HL + I+I G T L+ + Sbjct: 150 IFTEVETILSAGHFDNQSKIAFFAQQIKFGHLDTALQDLTIVIDGFTRFSAEEENLIGLL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G ++ G S + Q SL + L K Sbjct: 210 HE--KGVDIIIGTYISQKAY-------------RSTFSNGNVYQASL-DFIRGLAGKF-- 251 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 E +F D ++++ K V + + N++E Sbjct: 252 -----QTKPEYVVSKQEALPAFTKLSQLFESCHDFSDSQLVLTDKDKEHVTIWDVINQKE 306 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLH 426 E +A ++R L E + ++ + ++ I +S+ Sbjct: 307 EVEHVAKSIRRKLYEGHRYKDILVLLGDADAYKLQIGKIFDKYEIPYYFGKAESMSSHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L G + Sbjct: 367 VHFVDSLERVKRYNFRAEDVMNLLKSGL----------------------YGKIRQNQLD 404 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--T 544 L+ V+ K + D + L ++ + L+ + K Sbjct: 405 KLEQYVIYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELIKIQAQKGDSIL 464 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + LT + + + E+ KT + + + K + Sbjct: 465 QKLTNFLEAISLTNNFSKLIQGVSDTEQEK--NEQVWKTFTVILEQFHTIFGQEKMKLAD 522 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ ++ + + + + + + G+ + +PK + Sbjct: 523 FLALLRSGMLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLI 582 Query: 665 SRVMQSDLNLKTAE-------KYIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIAS 713 S ++ +N T + + F T+ L+ T N S Sbjct: 583 SDEERAKINEATPDNRRFDIVTKENLKKNHFTALSLFNAATQELVLTLPQILNEAEDNTS 642 Query: 714 RWLQRLLVLG------GTDFFDNLKKRGQCYLDWTRKL---------------------- 745 +L L +G G + + Y ++ Sbjct: 643 SYLLELQDMGVPVVEKGGNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFWSV 702 Query: 746 --------------------DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 D + QP S S + N+ Y Sbjct: 703 AVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQYLY 762 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHF 843 + + IL L + PD + GT H + +++ + + + I + F Sbjct: 763 FLQYILGLQELETIH--PDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + I+ S + + ++ ++ + + G D Sbjct: 821 HLVYNEDEESRYALGILEDIARSTATVLKGDNPVQAESE-EEAFELMLDQA-VKIRGVID 878 Query: 904 RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 RID L G + I DYK+ N + + PQL AL++ D K+ Y Sbjct: 879 RIDRLSDGSLGIVDYKSSKNTFDLQKFYNGLSPQLVTYIEALRSCKNLN-DTDKIFGAMY 937 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + + + T+ S +++ E KNL L E+ +++ + + S Sbjct: 938 LHM-----QEPKTDLANMKSIEKIPETVHKNL-SYKGLFLEDEKAHLANGKYHLHDAVYS 991 >gi|332295855|ref|YP_004437778.1| hypothetical protein Thena_1018 [Thermodesulfobium narugense DSM 14796] gi|332178958|gb|AEE14647.1| hypothetical protein Thena_1018 [Thermodesulfobium narugense DSM 14796] Length = 949 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 104/709 (14%), Positives = 226/709 (31%), Gaps = 71/709 (10%) Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + ++ + + + L N K ++T++ +L + + G ++S G P Sbjct: 260 IYQSQTLNGQVLKLRNILEQKKPLNYKDVIVLTSENSLFPVLYNAIP-AGEKYNVSIGYP 318 Query: 421 LSTTLHSSILT----SLLNAIFKLNDFMAIATLVKHPLA--------------KFGFPEK 462 LS T S+ L L+ HP Sbjct: 319 LSRTPIYSLFDMVSILLSRMNNLKFYAKDYINLLFHPYIKTLKFDKFSIVSENFPNIENF 378 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 ++ NK + + + + L+ Sbjct: 379 VTRIIFQKIQENIRNKNKIFISLSEFERNSEIFKEVLDAIKSFDVKINSEDNFTSSLSEF 438 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC---LDEHRKLPNLWFEE 579 L++ + I + K D+ + V L + L N +F Sbjct: 439 LIEIHNKVIKLFLNIKN----------FPDFIQRAVDLLDYISIKSLGHLNLYGNNFFRY 488 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 +TL L+S I N ++ +++ + + + ILG LE+R + Sbjct: 489 AYETLFDLYSTRISHAK--FKNLNQYFNLLKFFMQSSRIPFSSSILDGIQILGALETRNI 546 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLI 698 NFD + +++ P + FL++ ++ L+L T ++ +F + + Sbjct: 547 NFDRVFYLDISDDKLPNVNKEELFLTQDIRRILDLPTIKEREELQRTNFINLINSAKEVY 606 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + S ++ SR+++ ++ +++ P K Sbjct: 607 FFYSNSDSRTI---SRFVENIVWDLQKIRGSIEMPIDSKGINFQASFAQENPVPIEKNDD 663 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 + +S + I + + P + Y +L L ++D + G + H I+ Sbjct: 664 II--KFLKDFEFSPTSIDRYLRCPLSFYFAYVLNLKEHKEIEEDISSIEIGNIVHEILHF 721 Query: 819 LIKKRI-----NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 KK + N + + +I+D F++ + + + LE K Sbjct: 722 YFKKWLNVEFINVDFDNELKEIYKILDIKFQEIESKEVLLQKEQCRL--ALRNVLEKNIK 779 Query: 874 IQSSIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKE-- 927 +S++ +F+ ++ + + L G DRI LK + DYKTG PK Sbjct: 780 ELNSMKILFLEKEFTTKLSFNELKVRLVGRVDRIHKLKD-EYFLIDYKTGVSKIPKSNFL 838 Query: 928 --------TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + + QL + F +I+ ++ LK + + Sbjct: 839 PTLENRNLWFENIRSFQLPFYIFLFEE--FKKINFEQIIAGT-WSLKNIDDEKYFQFNYE 895 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++A L +++ + N + PF+ +E+ Y + Sbjct: 896 THNA------YFNALKYLISEILNKDVPFLPVSNKTEQRCAFCLYQTIC 938 Score = 39.5 bits (90), Expect = 2.9, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 42/228 (18%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 + P +RAI S+ + S I P S+ D V+ + +R Sbjct: 42 VIFPNRRAIHYFYSKIAKRIRTASKI-PATYSIDDFVDYIY-----------------ER 83 Query: 109 LLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + + R I I + + P +S + S I + + + Sbjct: 84 KINVYRKINIIESIDIIYMLLGNPEKFDSFKKIHNSFEEFIPWGEEFFKNFEELLINNVN 143 Query: 166 WEDLHALKNEKYGMWWLLAA--------------DFLKIASKYWTERLVELNASSPVGYQ 211 + + + + DF ++ +++E L S+ Sbjct: 144 FNSFDKINVFSSSKLYENSLIYKVLKTDFTNIIKDFFELYKDFYSE-LENRKLSTRASRY 202 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + R E + II G + L + + I + Sbjct: 203 NFVQRIE------LPEKTYIIGGFSRLNKCEEELFKNILSSRKSHIFV 244 >gi|49479136|ref|YP_035377.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81396897|sp|Q6HM44|ADDB_BACHK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|49330692|gb|AAT61338.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1171 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + E + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVAEENYRYRDVAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISFVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|288553537|ref|YP_003425472.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4] gi|288544697|gb|ADC48580.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4] Length = 958 Score = 167 bits (423), Expect = 9e-39, Method: Composition-based stats. Identities = 114/846 (13%), Positives = 253/846 (29%), Gaps = 132/846 (15%) Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + ++ Q+ L K L I + Sbjct: 158 AIELLDNQKPRVASVYIDGFIDFGPLQFILLKALVSAGIPVTIYLPID---------QEF 208 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + + E + DV +I A + EE ++ +RMS + Sbjct: 209 AIIQQTQKELTALGFQMHAETDLSAEPA--EDVDVIAASTKNEEIRAVLEEIRMSPLLYE 266 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + ++ +++ A ++ ++ I +++ L ++ + + Sbjct: 267 ETGIIVVDEKDGASLLRYYAEQYKIPLNVPIKKSLDCSISFQFI---HKLLTWDYSKTNR 323 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ PL F L I +K+ + Sbjct: 324 FELL--PLIDQIFTLHGL------------------KGIDYVKAKEAFLATGDIIHQESR 363 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 R+ E + + ++ Q ++ + + + ++L Sbjct: 364 ELYQRIKEFNWRKSSSFYHYLKQLSQAVIQLELDGKWRQRQGQETRTSEL---------- 413 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIET--GSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + L E L S +++ +E + + + D + L + Sbjct: 414 --KDIVFELKTIERLTELVSDYAEKLEAKHLTDLHMTLDVFADWVLELAKRTELFTARGS 471 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----NLKTAEKY 680 + + + L + + G+NEG +P ++ +L L T E + Sbjct: 472 KRGIQVHTWRDIGLFEGKKMYVIGMNEGAFPAVHQLGGYVHEKDLYNLPVEGALPTQEHF 531 Query: 681 I-GQAAHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKR---- 734 Q A+ ++ + ++ T + + N P + S ++++ L G + + + Sbjct: 532 RHKQQAYFGQLLLAAKSIVCTYTKGLDPNHPHLPSPFIEQWLQKDGRECTFEARMKHSIS 591 Query: 735 ----------------GQCYLDWTRKLDYTTKQ-----PHYKRPKPFPPLEAQPRTYSFS 773 G L+ +L +++ ++ + T S + Sbjct: 592 FSKEDQIEKTAYHMGLGMKVLEPAAELVQLSQRHQYLSEGEEKLEEAHQDSLMKNTVSIT 651 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI------NKN 827 E++ P+ R+L++ + ++ D G + H +I + K+ + Sbjct: 652 ELESYARCPFKHGLERVLQVGEVKSIQERISPIDIGQMIHTLIESIYKELDLIGVPFGEC 711 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH---SFLE----HEEKIQSSI-- 878 T EI + + ++ FE+ + + + + + + Sbjct: 712 TEEIKNEVPVLLKEKFEELWEQIESTAFEISRLDLLLEKEKWWRKINRWWQAERKHFWDN 771 Query: 879 ------EKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKE 927 + + ++ + E +HLTG DR+DL + G I DYKTG +E Sbjct: 772 PHLSEMKIHSLETSLRLELELDEGTTLHLTGKVDRVDLDQEG-FTIYDYKTGFAHVKLEE 830 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK----------------- 970 + + QL L A ALK + + YI L++ K Sbjct: 831 EVRSGLKLQLPLYARALKEQLSTTDAALRAHGASYISLREPEKRAGNGIWRSDQIGKSSK 890 Query: 971 ---IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE-QPFISHLRLSEKSNIQSEYDH 1026 N + DE E L V L G F + Y Sbjct: 891 FLVHHSCKNKEDDLGGDEFMEVYE--LRNKVHSLWKGTHTEFSVRP---LDCSSYCPYKS 945 Query: 1027 LARVAE 1032 + RV E Sbjct: 946 VCRVTE 951 >gi|324325257|gb|ADY20517.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1171 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMMTDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFIIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|300932821|ref|ZP_07148077.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 1130 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 119/1115 (10%), Positives = 286/1115 (25%), Gaps = 157/1115 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR-SEFIEITGKK 71 P + ++ A L + P+K + +R F ++G + Sbjct: 64 PGTGKTSFLVDAALAHIRAGGSAD---------EIMFVTPSKESATRIRNEIFGALSGGE 114 Query: 72 --STILPIIKSLGDVVEEKFTADLLLSYNLNPP-VSNIQRLLELARLILIWRNKLPDIIK 128 + +++S+ + A ++ + P +S + + + L+ Sbjct: 115 QYAGTGALVRSVHSWAFAYYRAHMVEQGEVAPRLISGAEHDIVIRELLREHART------ 168 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 + A+ L D++ + L L W AA+FL Sbjct: 169 --STGPWPGDVREAVGYVGFARQLRDVLLRATERGVGPQQLRELGMNYNRPMWTAAAEFL 226 Query: 189 KIASKYWTERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 + +S + + A + +EA +++ + PA A Sbjct: 227 REYQGVANLAGSVDVNASELLHKANEVMEAAVGSEAMQRRMSAVKLLLVDDAHNLDPAAA 286 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 R + P+ V D + E + + + L++ Sbjct: 287 RFVEHF--MPSAERVAIAGDPDQCVFHFRGADEAFLTRYAKEADSARGSRIILSR----- 339 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + ++ + L + + S + + Sbjct: 340 --------------SHRLTAQACLAINHLQTRLPFQPARMPIRGRDSAEGTSDSSLNCVI 385 Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID-ISAGIP 420 A E +S+A ALR + + A+I ++ L G+ + S I Sbjct: 386 APTETSHNLSVADALRRAHIRGIEYRDMAVIVRSVGKIPALRRVLMNHGVPVQVDSTSIV 445 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-----PLAKFGFPEKYLSRAKNALELVA 475 L+ +++ + A ++ + L++ E+ +++A + Sbjct: 446 LAEQPLVALILLAVQATYQPLTPAEMKQLLESIVGGADAVMVRRLERAVAKAVRRARIDD 505 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPL 534 + + V P W +KE+ ++ + + Sbjct: 506 NEEARQHHPNGRPYQAVDYLTWYLNFEDSAPEWVVEYLKTREKEVLQRVIRVLQAGREAM 565 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 T + ++ + + +L L F + Sbjct: 566 KTNAGPEMILWRIWQATELSNALQNRALRGGTVGAQADQDLDAVMNLFDLVGDFVERNPN 625 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 S D+ + + + + + + IL + ++ +++ G+ E W Sbjct: 626 ASVKTFV----EDVRAQELPTGGRDRRGVQPNAVEILPAHAAAGREWEFVVVAGVQEETW 681 Query: 655 PKNTAK----------NPFLSRVMQSDLNLKTAEK--------YIGQAAHDFEMANGTRH 696 P T L + + L + + I + F +A Sbjct: 682 PTTTPTVGGLFSQLDLVDLLDNNVGAAGELPSLVEITAGRVAATIAEERRLFLLAISRSR 741 Query: 697 --LIYTRSLRENNIPTIASRWLQRLLVLGGTDF----------FDNLKKRGQCYLDWTRK 744 + T SR++ + +G ++ R + Sbjct: 742 GATVVTAVNSVGEEGKEPSRFISEIQGVGASEQQVSQPQVTVTEAAELPRVLAVEPMVAE 801 Query: 745 LDY-------------------------------TTKQPHYKRPKPFPPLEAQPRTYSFS 773 L + + + S S Sbjct: 802 LRDAVTDSERPHHERVAAARNLARLAHHGVFGAHPDEWWGMAGASTDRVINPEEIRLSPS 861 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 +++ + + R + G + H I + + + Sbjct: 862 QLQLMDECVLRSFLDRNSGEQER------TEAMRIGEMVHAIAEGFVH---GLSLEDALR 912 Query: 834 LMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFL-EHEEKIQSSIEKIFVNIPAKMAI 891 +++ +I + W ++ + + + E + I Sbjct: 913 IVEVVIPEVSTVAWWRAESLKRNWTEGIERLHKWMRGQLDGLDVARGEGAVAEQVLRTTI 972 Query: 892 ----ESIGIHLTGFADRIDL------LKSGFV--DITDYKTGDNP-KKETAQKLIDPQLS 938 + I + L+G AD + ++G + + D+K+G P + A++ PQL Sbjct: 973 GSTGDGIEVLLSGRADLLITQVRTMDSEAGALGTWVIDFKSGKEPISGDDAKE--SPQLR 1030 Query: 939 LEAAALKA-----GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 L A + + + K I S DE+ E+ Sbjct: 1031 AYQYLLHAQSQDPAAGADRGKWSPLGAKLVYPGAKRSTMAIREQLSAESNDEVLEEFRNR 1090 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + Y L Sbjct: 1091 ----ALKIAELSNGPRIRPTPGSH-CDKCNYQFLC 1120 >gi|229171885|ref|ZP_04299454.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3] gi|228611595|gb|EEK68848.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3] Length = 1171 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 114/977 (11%), Positives = 262/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D ++ + + +RI ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTDEMITDSEREMEERINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLL---NFDTLILGGLN-EGVWPKNTAKNPFLSRVMQSDL-------NLKTAEKYIGQA 684 +L D L + G+ + + F+ M + E+ Sbjct: 622 EGMLSDEERDVLSVAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 685 AHDFE----------------------------MANGTRHLIYTRSLRENNIPTIASRWL 716 A F T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEMK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|121605094|ref|YP_982423.1| exonuclease-like protein [Polaromonas naphthalenivorans CJ2] gi|120594063|gb|ABM37502.1| DNA helicase/exodeoxyribonuclease V, subunit B [Polaromonas naphthalenivorans CJ2] Length = 855 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 109/698 (15%), Positives = 192/698 (27%), Gaps = 81/698 (11%) Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 + + +L A ++ +EA A + L + + ALI DR L RRV L Sbjct: 229 PEDEPDRPGAPQPSLHAALDDEDEAARAAACVLAHLAQGRSPVALIAQDRQLTRRVAAML 288 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R GI + G LST+ ++ L LL A+ A+ +K+ A Sbjct: 289 ARRGIAMRDETGWKLSTSRAAASLMGLLRALPWDVSTDAVLDWLKNAPAFASGTVTAAET 348 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + A R +L ++ Sbjct: 349 EVRKFGVRAWR----------------------------------------DLPAAPLEA 368 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + ++S ++ W + LQ+ E + L Sbjct: 369 LAVAQPLARQVNQLRDSLSRPRPLAAWLRDLRAALQSAGQWELLASDEA-GQRVLDVLRL 427 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 IE E+ + + ++ +T P+ + + IL + ++L Sbjct: 428 HEGADIEFEDAPAMKLREFTSWVNQALEAQTFSPEHPAAEQVVILPLAQLLGRAMQAVVL 487 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 G +E P + + + L L + E A ++ H+ E Sbjct: 488 PGCDEIRLPVSPEPPGQWTPGQRELLGLPSREALARVARQAWDYTLQLPHVDLLWRTSEA 547 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + S ++Q +L+ R + L Sbjct: 548 GEHLMPSGFVQEILLSRSLAADRAGDPRRLRAVAACPTLRPLPTGEALP----------- 596 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S S L PY +A R L L + + + D G HN++ + Sbjct: 597 VRRLSASSYGDLRACPYRFFALRQLGLHESDELESELGKRDFGNWLHNLLCRFHEALKEA 656 Query: 827 NTPEINHLM-------KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + +Q + W + HE Sbjct: 657 PAHDLPARIAMINVAAEQAAKELGLSHSEFLPFAAAWTPVRDGYLAWLAGHEAT---GAR 713 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLI-DPQL 937 M + + L G DR+D L G + + DYKT E + + D QL Sbjct: 714 FDMAEQWLDMPL-GSELTLIGKIDRMDRLPGGELLLIDYKTEPRATTAERIKNGLEDSQL 772 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + AA + Y+ L +K D L + L ++ I Sbjct: 773 AFYAALVAD---------DTLGAAYVNLGEKEPTRSYDQPDIVALRDALIDGILSDMARI 823 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 K+ L R W E Sbjct: 824 AEGAPLPALG-------EGKACDYCAARGLCRKDFWSE 854 >gi|315927430|gb|EFV06768.1| hypothetical protein CSQ_1123 [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 694 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 282 EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 339 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 340 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 399 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 400 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 452 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 453 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 512 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 513 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFMQFAKNEKEH 566 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + + I L G DRID K G + I DYK+G P Sbjct: 567 FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 620 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 621 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 658 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 659 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 686 >gi|218563083|ref|YP_002344862.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360789|emb|CAL35589.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 788 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFMQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|293368344|ref|ZP_06614972.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|291317591|gb|EFE58009.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|329734889|gb|EGG71189.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis VCU045] Length = 1159 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 140/1042 (13%), Positives = 292/1042 (28%), Gaps = 149/1042 (14%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G + E + L ++ L A L ++ + + D L L S Sbjct: 59 GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200 A L++ LA+ I + E L L + + + K R+ Sbjct: 113 QAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIENHSVQTRTKHKLEDISLIYKQLESRMN 172 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++ Q + +K K + I G R++ + H VL Sbjct: 173 GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + ++ + +H + +L L+ + + Sbjct: 231 TTD----------GSHHPFSLFRKPSEVLSHLEDIANRLNINLNKTYFNTFYRYKNDDLK 280 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR- 379 + + F P + V + E+ + REE +A + Sbjct: 281 NLENGFDALQFTPKHHQ-------------------NHVKIFESSSMREEINEVARRILK 321 Query: 380 --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 D + A++ D + A + L + I +I ++ +L SLL I Sbjct: 322 DVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEVI 381 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 A+ L K + F + LE L +D +D+ + Sbjct: 382 RSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQFS 439 Query: 498 TQKNNTHVP-HWQSRLSEEDKELAVLLVD---HILQCITPLVTYKTNKNSTCGNLSISDW 553 +H L +E +L ++D H Q + T K S +L + Sbjct: 440 RMGRKSHQLTEEHQALYKEVIKLKTNVIDKVLHFEQAMNEAHTVKDYATSFYESLEYFEL 499 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 +T + L + ++ L + ++ + +++D+ + Sbjct: 500 PSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIGL 558 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + + + I +++ N + + G+N+G P+ + + ++ + + Sbjct: 559 EQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGTLPQTVSSSSLITDEEKKYVE 618 Query: 674 L-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR----- 718 T++ A +A + ++ SL N+ S +L + Sbjct: 619 DNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKELF 678 Query: 719 -------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRPKPFPPLEAQ 766 L L ++ Q + L + Sbjct: 679 YDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAYLAIRDDDQL 738 Query: 767 PRTY-------------------------------SFSEIKQLINDPYAVYARRILKLDF 795 + S S + P+ YA L+L+ Sbjct: 739 NQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLNE 798 Query: 796 IPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----EN 847 K + D G +FH+++ + N +T I L K+ ++ K Sbjct: 799 R--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNLL 856 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MAI 891 I + L+ + S + + Sbjct: 857 NSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLITN 916 Query: 892 ESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL- 944 + I I++ G DRID I DYK + + Q+ + Sbjct: 917 QGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIVL 976 Query: 945 ---KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 + + I K L Y + + D+ + +KN ++ L Sbjct: 977 QNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSGL 1029 Query: 1002 QNGEQPFISHLRLSEKSNIQSE 1023 N +Q + L + + S+ Sbjct: 1030 LNRDQEVLDALDIRLEPKYNSD 1051 >gi|289759337|ref|ZP_06518715.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85] gi|289714901|gb|EFD78913.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85] Length = 729 Score = 167 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 96/734 (13%), Positives = 192/734 (26%), Gaps = 103/734 (14%) Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLA 399 + +I V + A + EA IA ALR + + A+I A Sbjct: 15 RSVGRRIEGTGTEVGSVTVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRA 74 Query: 400 RRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R+ L G+ + A G PLS L ++L A D L+ P+ Sbjct: 75 VRLPRALAAAGVPVAPPAVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVD 134 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 R R LV + R+ Sbjct: 135 PVSLRQLRRT------LQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTA 188 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A L P +++ S + + ++ + +L Sbjct: 189 AARCHRSGSLGGQDP-------RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETV 241 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 ++ + A+ ++ +T L + + +L + Sbjct: 242 TALFDITDHYV-----SRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALG 296 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAH 686 +D +++ GL +G+WP + L L E+ + A Sbjct: 297 HEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAM 356 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRK 744 + + + + + S + + + L Sbjct: 357 GRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAV 416 Query: 745 LDYTTKQPHYKRPKPFPPLEAQP------------------------------------- 767 + Sbjct: 417 VGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDD 476 Query: 768 -RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 T + S ++ L + P A R + + G++ H + E + Sbjct: 477 LVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGR 525 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + ++ + + + H + + +F++ + +S + K+ V + Sbjct: 526 SESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVD 582 Query: 887 AKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 A+E I L G ADR++ +G + I D KTG P + + QL++ Sbjct: 583 IDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQ 641 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A+ G D A L Y+ + D L+ + +V L Sbjct: 642 LAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQL 694 Query: 1002 QNGEQP--FISHLR 1013 FI+ Sbjct: 695 AAATAGPQFIARRN 708 >gi|229101823|ref|ZP_04232538.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28] gi|228681616|gb|EEL35778.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28] Length = 1166 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 115/1052 (10%), Positives = 282/1052 (26%), Gaps = 172/1052 (16%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + IE + +I + S + + S + + L +++ + Sbjct: 43 QQALIEREDVRGSIRAQVFSFSRLAWKVLQEVGGASRLH---IDEAGVHMLLRKIVESRK 99 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKY 177 + L S+ A ++L +I + +++ + + Sbjct: 100 DGL-------------SVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHS 146 Query: 178 GMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 L++ + L + + L+ + I I Sbjct: 147 SSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYID 204 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G P ++ + + +D N + + + Sbjct: 205 GFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELDLFYETMLTYEKI------ 258 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 ++ I+ E L R + + L N + Sbjct: 259 ---KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYYDE------ 304 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRF 409 + V + A N R E +A +R + + + A++ + + ++ T + Sbjct: 305 ---ASVTISTAANLRAEVEGVAREIRRLVADETYRYRDIAVLLRNGESYYDVMRTLFTDY 361 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--- 466 I I P+S + S L I + A+ VK L K + R Sbjct: 362 NIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEMMREEM 421 Query: 467 ---------------AKNALELVALRGNKNSYDIM----DLKSLVLDRIATQKNNTHVPH 507 + + R ++ D D++ + ++I ++ P Sbjct: 422 DEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDIEREMEEKINRLRDVVRTPV 481 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCL 561 + + + + + + + + L + + L +D ++ + Sbjct: 482 IRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVM 541 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKP 620 + + S + ++ + + + +I + Sbjct: 542 SLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDVKATF 601 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-- 678 I + + ++ +L+ + + G T + + + + + +E Sbjct: 602 IIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTLLEEQFVMYQMVTRASEKL 661 Query: 679 -------------------------------------KYIGQAAHDFEMANGTRHLIYTR 701 + + T + + Sbjct: 662 YISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATPEVTLSY 721 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF- 760 +++ +R G DF+ ++ +W +K Y+ Sbjct: 722 VMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKL 774 Query: 761 -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 L S S ++ YA +A+ L L F D D G LFH Sbjct: 775 STVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAA 832 Query: 816 ITELIKKRINKNT----------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS 864 + + + + +N ++ L+ + I +++ L + +I Sbjct: 833 LKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQII 892 Query: 865 --HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LL 908 S + E S + + +P M ++ + L G DR+D Sbjct: 893 FRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVIGRIDRVDKAED 952 Query: 909 KSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYI 963 ++G + I DYK + + Q+ + + + A + Y Sbjct: 953 ENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTTNAQTWMKKGHAALPAGVLYF 1012 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + + I K S E+ ++ LK Sbjct: 1013 HI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|258512042|ref|YP_003185476.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478768|gb|ACV59087.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1169 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 113/1027 (11%), Positives = 276/1027 (26%), Gaps = 126/1027 (12%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--- 172 + +L E L L +L D + E L AL Sbjct: 86 LTQVGRQLLLRAAYDELEPSLGPLRRAVRNPSLYHHLLSAFDELAAHGVSPEQLGALLEM 145 Query: 173 --KNEKYGMWWLLA--------ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 A + + + + P + + A A H+ Sbjct: 146 SAARSDEVEDKQRAVHRSLVGKLGDVLKLYVRYRQLAEAAGFADPALLYLDAVHA-APHV 204 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + + G PA + +S +A ++ D + W + E++++ Sbjct: 205 SWLEDASLYLDGFHAFSPAERQFISALARRAKRLVITWE-DTGLEGERWEALLEEASSPA 263 Query: 283 SSNTTY---STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + H ++ ++ + R + + + + Sbjct: 264 AWPHLSVWVDAHEEHFSSESQAVAAYHLLECARDFAQVSLDQAFCRMPIGATEGRFGASP 323 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKKKSALITADR 396 ++ V + + EE ++A + + A+ Sbjct: 324 LVYLERALAGHAPEQPIRGVRVSAFGDRAEELCAVADEIAHLVQHERVRPRDIAVCVPTV 383 Query: 397 NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + R EL G+ + I + L+ +L + A+ D IA L++ PL Sbjct: 384 DGIGRDLADELEVRGVPVSIDSFATLADHPVGQLLRGAIGAVRTGFDLDTIAALLRCPLV 443 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 E + + ++ R A+ + + +L + Sbjct: 444 PVKRREAFDLYLREHGVSGFAAWLAPEPWAFAARA---PRSASGLRDEEADEIRRQLGDA 500 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + L+ + + +++ Q+V + + Sbjct: 501 LRPVIQAFAQPTLRLLEAARALWELLQAFRVKDALA----------QSVVQVGDDPMAGV 550 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 E+ +++L + I A E D++ + + +F+ Sbjct: 551 IHEQAWSGVTALLDDLATLEPEIALPAYEVADLVLESMASLRLTRIPSDVDAVFVCDFAR 610 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ--------SDLNLKTAEKYIGQAAHD 687 + + + + ++ P + L + L + ++ Sbjct: 611 ADNWSRPRVFVVAADDASLPPRVEPSGILRDDERLAFAEVFLRPLGRTSEDERRALECMP 670 Query: 688 FEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLD 740 + + L+ T + E I + L L+ Q Sbjct: 671 YRVMTRASEALVVTYAASEGGIERHLAPALASLVERGHLSIDAARGEGAVPVHPVQAMRL 730 Query: 741 WTRKLDYTTKQPHYKRP--------------------------------KPFPPLEAQPR 768 L ++R +P P Sbjct: 731 LADALSRVHTGAPFERVTQDPVVQDVLTYMWTGAGDVARFQRVLAGLCHRPRPWRLPAEW 790 Query: 769 ---------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 S S ++ Y +A+ L+L+ + + + GT H + Sbjct: 791 IRDLYGDPIRVSVSRLETYAKCSYRHFAQYALRLEPLALQPEAE--RNAGTWIHAAVQLA 848 Query: 820 IKKRINK-------NTPEINHLMKQIIDSHFEK-----------ENLPPHIDIIWRHLFH 861 ++ + E+ + +I E+ E + + R Sbjct: 849 TQRLADDHRRLSELGHEELETALLEIAHQALEQAAQDTKLQSTLERPDVAVYVEERRRHF 908 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK----MAIESIGIHLTGFADRIDLLKSGFVD--I 915 + + + + + +++ + A + + L G DR+D L+ G + + Sbjct: 909 EFVVRAI-WMQLARGQMRPLWLEKEFRDVDMGAWNGVRVVLDGRIDRVDRLEQGELALCV 967 Query: 916 TDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIRLKQKFKIDC 973 DYK+ + + + QL + AA + + + ++ FY+ L K Sbjct: 968 YDYKSSETSLHPSKVHQGLQLQLLMYAAMAMREAEAVERASARLYGAFYMPLVAKRDALD 1027 Query: 974 ITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA-- 1028 + D+++ SA + ++ + + P + ++ + A Sbjct: 1028 VPPDQREVSAQLSAYRARGFFLRDEGAILRVNEDLAPGRGSVLFGKQFRTDGAWAADATA 1087 Query: 1029 -RVAEWR 1034 R EW+ Sbjct: 1088 WREDEWQ 1094 >gi|312865918|ref|ZP_07726139.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415] gi|311098322|gb|EFQ56545.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415] Length = 1114 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 128/967 (13%), Positives = 279/967 (28%), Gaps = 158/967 (16%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + E L + S A + L D+ ++ DL L++E + D L I Sbjct: 97 FKEGDLKIYGSLAKDPNFIQQLVDLYQEMQRSNLTISDLADLESE------VKYQDLLTI 150 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHL-MKGTKGPIIIAGSTGSIPATARLMSTV 249 S ++ + L E N S L + L +I+ G + L++ + Sbjct: 151 FSAFY-QLLQEDNFESQTKIAQFLEHVNSGQLDQDLQNLVVIVDGFSRFSAEEEALVTAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + ++ T S S+ Q ++ LLD Sbjct: 210 HDREVEIVI---------------GTYASQKAFKSSFLAGNLYQANVEFLLDLGQKFAVR 254 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + LG + R + ++ D + Q+ + + E N++E Sbjct: 255 AQVLGERQEDSLSRLSALLEAKR----------DFSSDLPEISQEDKQALTIWEVVNQKE 304 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E ++A ++R L++ K L+ D + +++ I + +S Sbjct: 305 EVEAVARSIRNLLNQGVRYKDILLLLGDVEAYQLQIAKTFSKYEIPYYLGKEEAMSHHPL 364 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + SL+ + L+K L K +R Sbjct: 365 VNFVESLMRIKRYNFRAKDLLNLLKSGLFKDLMN------LDIDKFEQYVRFADIKGQAK 418 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 K ++R A + V D + ++ + L + ++ S+ Sbjct: 419 FSKDFTVNREAGLDDEGQVIEKY------DLVRLNQIRRAVMTPLLELFSSRSLLGSSLL 472 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCIKANAIEW 605 + + L + + L EE ++ L ++ + K + ++ Sbjct: 473 TKKFLPFLEAIDLPANMAQLAKGQNQAGLEREEEVWQSFCDLLEQMDDIFGGTKLSLDDF 532 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ + + K + I + + G+ +P+ + L+ Sbjct: 533 LALLGQGMMAANFKLVPATLDVVNIKDYKLIEPHSSPYVFALGMTASNFPRLSQTTGLLT 592 Query: 666 RVMQSDLNLKTAEKYIGQAAHD----------FEMAN------GTRHLIYTRSLRENNIP 709 + +N A + + H F ++ L+ + + Sbjct: 593 DEERQQINETLASQ--DRQGHFEISGQEEVKKFHAVMISLVNSASQSLVLSAPQISADSQ 650 Query: 710 TIASRWLQRLLVLGGTDFFDNL---------------------------------KKRGQ 736 S +LQ L+ LG K++ Sbjct: 651 DQLSPYLQDLVDLGFEPILKKPAGFASQPTDLGTYKALLSRIIEANQLSQNQDLDKEQTT 710 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPP---------------LEAQPRTYSFSEIKQLIND 781 + R+L K+ P QP S S + N+ Sbjct: 711 FWSVMVRRLRQKLKEVDLAIPTISQDLTVEPLSQETLDLLYPADQPLKLSASSLTTFYNN 770 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII-- 839 Y + +++L L PD G H + L+ K ++ + L+ + + Sbjct: 771 QYGYFLQKVLNLQEEDSIH--PDFRQHGIYLHRVFERLMSKL--DDSSNFDQLLSRTLSQ 826 Query: 840 ---DSHFEKENLPPHIDIIWRHLFHKISHS------------FLEHEEKIQ--------- 875 + F++ R + I+ + L+ + Sbjct: 827 VNQEEAFQQVYSYDQEAQFSREILEGIAQAMTHILRDNHLVQVLDKAQARHYLGQRNWQK 886 Query: 876 SSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKET 928 + ++ + + + + + + G DR+D L S + + DYK+G E Sbjct: 887 TPAQQKALELGFNLQLPLGQERKLEIRGQIDRLDQLSSSESPNLGVVDYKSGDKKFSLEE 946 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + PQL A++ +V Y+ L + + S + + Sbjct: 947 FYNGLSPQLLTYILAIRESMPQDYQA-QVFGAGYLHL-----QNPELKFSEVASLGQSLD 1000 Query: 989 KSLKNLI 995 K K Sbjct: 1001 KFDKAFR 1007 >gi|227494917|ref|ZP_03925233.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831369|gb|EEH63752.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] Length = 1088 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 125/1055 (11%), Positives = 274/1055 (25%), Gaps = 161/1055 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 V + VP + L++ + + P +L + + + + Sbjct: 69 DVLVLVPDRLRADYLQATVESLLPGIVRPVKTP--VALAYKYLQTWYVERAEPRLFPQLL 126 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + + +ELA+L+ E P ++P L ++ + Sbjct: 127 TGAREDIELAQLLET-----------CAVEWPENIPADLRALPAFRMELRNLFERAREAG 175 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIAS--------KYWTERLVELNASSPVGYQIALM 215 L AL + W+ A L++ L I+ Sbjct: 176 LDGAGLVALGESEREEIWVSAGKLLQLWETLPLSVGSAETPALLTTAQLQETAAQVISAW 235 Query: 216 RAEAE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 EAE +I+ AT L+ +A G +++ + I A + Sbjct: 236 SVEAEKQQVSAALEVPRVVIVDDLQDCTVATLNLLVALAK--QGTVIVATANPDIAVATY 293 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 ST L + L V +++ G V + Sbjct: 294 RGGEPHLDGRFREALQVSTL----------QLGPTYRGNQVLSKVVDKLTGFLPVAGGAD 343 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391 S + + +V I + + A+ Sbjct: 344 RRKFGSVNADESASAGVAQLYASAYQEVTGIIRQLNYQHLHE---------KVEYQDMAV 394 Query: 392 ITADRNLARRVKLELTRFGIN-IDISAGIPLSTTLHSSILTSLLNA-------------- 436 I + + L R GI S I +++L LL+A Sbjct: 395 IVRRSHEVEHFRQALVRNGIPTSVNSRAITYLHKPITAMLLLLLSAENVAVKVLTDEFGQ 454 Query: 437 -IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + + + LV+ PL K + R L N +++ + Sbjct: 455 QLEVQQELLILEQLVRSPLVKI---DPLKLRRVTDLVGQLSERELNLWELFTKVQELDRA 511 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + ++ + E++ +++ + + L + G + T Sbjct: 512 TDKTSDEAERAIRKTLKTTENQATVQVMLQCLS--LIHLGRELQEASPNVGVWKLWQATG 569 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 L + ++ + + +L + A +++ + I Sbjct: 570 LEDSFVKLALAGTSESVSADDRLDAVISLCRTADVWQQRHPEGTA-LDFANELVAQTIPS 628 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR--------- 666 + + ++ + + +L +++ + + + G+ VWP +N Sbjct: 629 DNLATIAQRPAGIEVLTVMQAAGRQWPVVFVAGVQSDVWPNLAIRNRLTKASQISLKVHH 688 Query: 667 ------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 + + + + + ++ ++ + L Sbjct: 689 PELKGLPQTQIFKQLKLQSRVDELRTFVAAVSRSSEKLFISAVSGEDTAQSVFFDLAAEE 748 Query: 721 VLGGT--------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-- 758 L L + + +L P R Sbjct: 749 FLSAESVSDNFDVLQQIVELRELPVAEMRPLVAKLRRLSAQDTQLLEAEINPELARVAEQ 808 Query: 759 ---------------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 P S S I+ L+N P + R Sbjct: 809 ILASLALQGVRIADPLNWTGTRLEEISHAPVFPGDKPVLSPSAIESLLNCPAQWFLSRHG 868 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 GTL H I + + ++ ++ D Sbjct: 869 GSRK------STGAAGLGTLIHTIAEKYPH----GDAEQMLADLEIFWDDGEYNRETELG 918 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 KI + + V + +++++ + G DR++ + G Sbjct: 919 RRAYTDAR-EKIVK-----LAQCFADFGNGEVEVEKRISVDVGIATIMGVIDRLEHI-DG 971 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 V +TD KTG P + QK QL+ AL + +V + L++K Sbjct: 972 AVRVTDIKTGYVPSVKETQKH--KQLAFYQYALMKAGY------EVMGARLLGLREKDPA 1023 Query: 972 DCITND--KKKYSADELSEKSLKNLIEIVTLLQNG 1004 I + + EL + +L V ++ Sbjct: 1024 KYIQSSIMGDTEISKELLANTEADLQLAVERVRGP 1058 >gi|229160193|ref|ZP_04288192.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803] gi|228623154|gb|EEK79981.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803] Length = 1171 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 118/1070 (11%), Positives = 276/1070 (25%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 HEVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D + + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEILRKLMMCGARVTITLTIDEKTLAQPVSELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLETH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 N + V + A N R E +A +R + + A++ Sbjct: 298 YEARPNEKFHGE---------ASVTISTAANLRAEVEGVAREIRKLVANEQYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYL-SRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + E L + R Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTSGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLVANIDHSRLSNVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + E Sbjct: 649 LEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFALPN 939 Query: 899 ------TGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D + + I DYK+ + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSAKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGGTASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|313683464|ref|YP_004061202.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994] gi|313156324|gb|ADR35002.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994] Length = 780 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 79/490 (16%), Positives = 161/490 (32%), Gaps = 75/490 (15%) Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + L E +L + S +E + I + Sbjct: 342 QFSQLEEMMMLWEGGDESSLEVIRDELHRFGHLSHALEV-----MDFRAVFKIFMNRLRQ 396 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 +++ + + ++G LE+R + F+ +++ NEG P + K+ FL+ + L Sbjct: 397 KSI--DDVRGGKITVMGLLETRGVAFEGVVIVDFNEGYVPHKSEKDLFLNTKTREYAGLP 454 Query: 676 TAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 +A H + + + + ++ SR+L +L + + + Sbjct: 455 SAHDRESLQKHYYSILFNRAKRVAIGCVQN---AESVPSRFLLQLGIKSIPAAYRYEEVL 511 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 R++ + + S S IK ++ Y R I + Sbjct: 512 FPPPAFNVRQVKSFECE-----------YDFTAHPLSASGIKSFLSCKRQFYYRYIEHIR 560 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKENLPPHID 853 + D G H+ + +L ++ +I ++ ++ + L H+ Sbjct: 561 DHELPRDLSQERDIGNALHSALEKLFIDAAEYSSAVKIKEALRNQWENTAADDPLERHMK 620 Query: 854 IIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 +W F E E + + ++ A+ +E GI L+G DRID + G Sbjct: 621 RLWLDKL----DPFYEQEAARFASGAKVLYTEKEARAVVE--GITLSGRIDRIDEVV-GR 673 Query: 913 VDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 ++ DYK+G P + + +D QLS+ A G F VA Y L + Sbjct: 674 FEVIDYKSGKFPDTDKEPKESDVDYQLSVYALLA--GEF-----GDVARCGYYDLNKGEL 726 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 ++ E + L EI++ + + + Sbjct: 727 K-----------VEQFLEAKTEKLREILSEMASKKT------------------------ 751 Query: 1031 AEWREEYDIS 1040 EW D+S Sbjct: 752 WEWEMCEDLS 761 >gi|228971237|ref|ZP_04131866.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788472|gb|EEM36422.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 1166 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 186 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 187 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGAKVTIPLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|57238505|ref|YP_179636.1| hypothetical protein CJE1655 [Campylobacter jejuni RM1221] gi|57167309|gb|AAW36088.1| conserved hypothetical protein [Campylobacter jejuni RM1221] gi|315058936|gb|ADT73265.1| hypothetical protein CJS3_1562 [Campylobacter jejuni subsp. jejuni S3] Length = 788 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 146/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELMYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVVHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDKNASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|228938358|ref|ZP_04100969.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977846|ref|ZP_04138228.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407] gi|228781864|gb|EEM30060.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407] gi|228821304|gb|EEM67318.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938867|gb|AEA14763.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 1171 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 120/1070 (11%), Positives = 283/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 REVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L + + L+ Sbjct: 134 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERAL--IGKYLDSEDYLQLL 191 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 192 VEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGAKVTIPLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALI 392 E + + V + A N R E +A +R + + + A++ Sbjct: 298 Y---------EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADEKYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 409 TELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITDSE 468 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 529 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 588 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 589 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 648 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 939 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 1000 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1044 >gi|81428520|ref|YP_395520.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B) [Lactobacillus sakei subsp. sakei 23K] gi|123564301|sp|Q38X70|ADDB_LACSS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|78610162|emb|CAI55211.1| ATP-dependent exonuclease, subunit B (ATP-dependent exonuclease, subunit B) [Lactobacillus sakei subsp. sakei 23K] Length = 1186 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 110/993 (11%), Positives = 253/993 (25%), Gaps = 157/993 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +S + + RL+ + +L ++ ++ L K L ++ Sbjct: 89 PRISTAGLNMLVFRLLQEHQEQLQLFRGEVRHTGFVA---------QLTKQLL----ELK 135 Query: 161 TEEKKWEDLHALKN--EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 DL A+ + L I + + + + + + Sbjct: 136 IGCITPADLTAMAENLGDQQVELAKKLHDLTIIATAFEAAMQKRFIENTALIDALTLFL- 194 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 T + G L++T+ I LD P + + Sbjct: 195 --QQQTLTDCHFYVEGFAQFTAQEQALLTTLMQQSEVQIGFI-LDRAYPNQQPDGLNFFF 251 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 T+ L+ + + + + ++ + Sbjct: 252 QAG-------RTYYNLYQQARLNHVPVMMDQMADSQRLTPALAALDQF------------ 292 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALITAD 395 +++ N+ + + ++ A+N E +A +R + + ++T Sbjct: 293 WVSSESPGNRKLSPVPVADHLHVVAAENRYAELRYVAREIRRLVQTGHYRYRDFLILTRH 352 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + + LT + I ++ S+L LL+ + + L+K L Sbjct: 353 LAPYQTMIAPILTEYEIPYFCDLPQTMAAHPLVSLLEKLLDVNLHFYRYEDVMALLKTEL 412 Query: 455 A-KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSR 511 G + E + L+ D ++ R + T + Sbjct: 413 LIPKGMSIAEFRADLDLCENLILKNGYEGKDWLNDFDWQFYRFGSYQEGTRTTQDEALTE 472 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + + + T + L + + L ++ Sbjct: 473 RINGIRRYVQATLPPFYRALKAAKTGRQVVQVLYQFLIDHGVDRQLLHWRDQ-ALAANQV 531 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKA------NAIEWIDIITRLIDGETVKPKIEKS 625 E+ T + + + + E+ +++ Sbjct: 532 AQAGQPEQTWSTFMQMLDEYVTLLGDVSFEEDNTEQLNEFKQLLSAGFAAAQYAQIPSTL 591 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------------- 672 + + + + + G + V P L+ + L Sbjct: 592 DQVVLSESGMVQTKKRQITFMIGSTDQVMPDQIENTALLTDQDRQRLLDNEGQVTPLLNE 651 Query: 673 ---NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA-SRWLQRLLVL------ 722 AE Y+ A + + +T L S +++R+ Sbjct: 652 SSVGKMNAEPYLNYLAF----LSSQTTVYFTYPLGNGEGTAFKISPYVERIRNHFDLTIQ 707 Query: 723 --GGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------------------- 751 + + + L ++Q Sbjct: 708 KIAAEQSLQSTETPQGSWRSLLSDLIQVSRQAQENQTLIPEQWLTTYRLLQQAPQSQFLT 767 Query: 752 ------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P P+ L S S++++ + YA + + LKL P F Sbjct: 768 TQLFQSLNYRNEPERLTPEIVTGLYGNEIHTSISKLEEFYQNQYAYFLKYGLKLQERPVF 827 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 + + G +H ++ IK + + + +++ K P I+ Sbjct: 828 E--LTPANTGNFYHEVMDRFIKLIQGQQIALPELDDQQIDKLVSEVLAKTYEQPEFKILN 885 Query: 857 RHLFHKISHSFLEHEEKIQS----------SIEKIFVNIPAK-------------MAIES 893 + L K S ++ + + M + Sbjct: 886 KTARMGYIRQQLMQTVKRVSLALRNQSLSTNLRPLATEVLFGQVGAEKGLQGLNFMLDDH 945 Query: 894 IGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL---KA 946 + + G DRID L + + I DYK+ + A + Q+ + + Sbjct: 946 REVKVRGKIDRIDQLTINNQPYLGIVDYKSSQHSFNFRDAYYGLALQMLTYLETVLQDQQ 1005 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 K A FY+ LK KK Sbjct: 1006 AILPANSAVKPAGAFYLHLKNPTLTLKQLTKKK 1038 >gi|229108698|ref|ZP_04238308.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15] gi|228674728|gb|EEL29962.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15] Length = 1166 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 121/1070 (11%), Positives = 282/1070 (26%), Gaps = 177/1070 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 +E++ E + K+ + +P + G + + F+ L++ + Sbjct: 15 REVQEELKQCPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 73 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 74 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 128 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L+ Y L+ Sbjct: 129 NVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLV 187 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I I G P ++ + + +D N + Sbjct: 188 EKLPQSEYVN-GAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDEKTLAQPVNELD 246 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + + L Sbjct: 247 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALAHLEAH 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENKKKSALI 392 E + + V + A N R E +A +R + + A++ Sbjct: 293 Y---------EARPNEKFNGEASVMISTAANLRAEVEGVAREIRKLVANEKYRYRDIAVL 343 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 344 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 403 Query: 452 HPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA------------- 497 L K + + E L + R Sbjct: 404 TELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSE 463 Query: 498 --------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 ++ P + + + + + + + + L + Sbjct: 464 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRAEE 523 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANA 602 + L +D ++ + + + S + ++ + + Sbjct: 524 SGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQ 583 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I + I + + ++ +L+ + + G T + Sbjct: 584 VLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTTRQTL 643 Query: 663 FLSRVMQSDLNLKTAE---------------------------------------KYIGQ 683 + + + + +E Sbjct: 644 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPNVKDSFITNDVNDL 703 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 704 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 756 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 757 KSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQHGLSLRERD 816 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + ++ K ++ L+ + I +++ Sbjct: 817 IF--KLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQI 874 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 875 LLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPN 934 Query: 899 ------TGFADRID--LLKSGF-VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D ++G + I DYK + + Q+ + + + Sbjct: 935 GVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 994 Query: 949 ---FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + A + Y + + I K S E+ ++ LK Sbjct: 995 QTWMKKGHAASPAGVLYFHI-----HNPIVEMKGDASEAEIEKEILKKFK 1039 >gi|225870332|ref|YP_002746279.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp. equi 4047] gi|225699736|emb|CAW93493.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi subsp. equi 4047] Length = 1073 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 129/958 (13%), Positives = 263/958 (27%), Gaps = 137/958 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E L + L ++ ++ DL L + D + I Sbjct: 98 QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 +K E+L+ L A + + ++I G T +L++ + Sbjct: 152 TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ +I + K +S Q K + Sbjct: 210 NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + + R + ++ D + + + S V + +A N++E Sbjct: 257 YTTSEKVFDVSFSRLTQLLEANHDYSKLDWQLSAKDK----------SKVVIWQALNQKE 306 Query: 370 EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + L+ + ++ +F I I P+S Sbjct: 307 ELEHVAKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL I L+K L E L + + L ++G Sbjct: 367 VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L S + + + + ++L + L+T+ Sbjct: 426 TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +++ R+ EE K + + + K + + Sbjct: 480 FEALA---------------GSRRETDREKDEEVWKAFTGILETFYQVFGQEKMTLADCL 524 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +I + + + I + + GL+ +PK T +S Sbjct: 525 ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584 Query: 667 VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 + L++ + E K Q A A T+ L+ + N S Sbjct: 585 QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643 Query: 715 WLQRLLVLGGTDFFDNL------------------------------------------- 731 +L+ L+ LG Sbjct: 644 YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703 Query: 732 -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 ++ L + T +P QP S S + N+ Y + Sbjct: 704 LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFSSQQPLNLSSSALTVFYNNQYKYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844 + +L L PD G H I + K R N + ++ F+ Sbjct: 764 LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + I++S + ++ ++A+ + + G DR Sbjct: 822 QVYQADAEGRYSLEVLKGIAYST-ASVLDLNQGLQITKQEEAFELAL-GQQVLIRGVIDR 879 Query: 905 IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ID L G + I DYK+ + PQL AALK + + Y+ Sbjct: 880 IDQLADGRLGIVDYKSSARVFDIVAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +++ D+L + K L + + ++++ + + Sbjct: 934 HMQEPRLSLSDFK----ALDDQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986 >gi|229195441|ref|ZP_04322209.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293] gi|228587981|gb|EEK46031.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293] Length = 1166 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 259/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|77410684|ref|ZP_00787043.1| exonuclease RexB [Streptococcus agalactiae CJB111] gi|77163220|gb|EAO74172.1| exonuclease RexB [Streptococcus agalactiae CJB111] Length = 808 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 97/740 (13%), Positives = 206/740 (27%), Gaps = 107/740 (14%) Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKL-ELTRF 409 + + E N+++E +A A+R L + + ++ D + + ++ Sbjct: 21 DTAKDCITIWECINQKDEVEHVARAIRQKLYQGYRYKDILVLLGDVDSYKLQLSKIFEQY 80 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAK 468 I ++ + SL + L K + + A Sbjct: 81 DIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYFEAY 140 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + + + ++ K L R+ T + + P +++ Sbjct: 141 ISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDG---------- 190 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 I L + + ++S Q +E KT + + Sbjct: 191 --IKTLNQFMFFLTQVGLSDNLSRLVGQMSENEQEK------------HQEVWKTFTDIL 236 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + K N E++ ++ + + + + + + G Sbjct: 237 EQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALG 296 Query: 649 LNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMA----NGTRHL 697 + + +PK +S + + + F + L Sbjct: 297 MTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAAKQEL 356 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGT-------------------------------- 725 + T N S +L L +G Sbjct: 357 VLTIPQLLNESEDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRS 416 Query: 726 DFFDNLKKRGQC-YLDWTRKLDYTTKQPHYKRP---------------KPFPPLEAQPRT 769 + K Q + R L + P E P Sbjct: 417 AIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLK 476 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S + N+ Y + + +L L+ PD GT H + L+K + ++ Sbjct: 477 LSSSALTTFYNNQYKYFLQYVLGLEEQDSIH--PDMRHHGTYLHRVFEILMKNQGIESFE 534 Query: 830 EINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E + + F+ + I+ + + S + Sbjct: 535 EKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQD-SQMTVESEEERF 593 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEA-AA 943 ++ I+ I + G DRID L G + + DYK+ +K QK + PQL A Sbjct: 594 ELMID-NTIKINGIIDRIDRLSDGSLGVVDYKSSA--QKFDIQKFYNGLSPQLVTYIDAI 650 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + Q + Y+ + + + K + D+L K+ + L L Sbjct: 651 SRDKEVEQKPP--IFGAMYLHM-----QEPRQDLSKIKNLDDLVTKNHQALT-YKGLFSE 702 Query: 1004 GEQPFISHLRLSEKSNIQSE 1023 E+ F+++ + K ++ SE Sbjct: 703 AEKEFLANGKYHLKDSLYSE 722 >gi|254457248|ref|ZP_05070676.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] gi|207086040|gb|EDZ63324.1| conserved hypothetical protein [Campylobacterales bacterium GD 1] Length = 783 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 71/385 (18%), Positives = 148/385 (38%), Gaps = 31/385 (8%) Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + I + + + T+ + + ++G LE+R ++FD +++ N+G P+ + Sbjct: 386 EMSVKSLISLFLQRLASATI--DDVRGGKVTVMGVLETRAIDFDAVVIVDFNDGNVPRRS 443 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQ 717 K+ FL+ ++ NL T H +EM ++ + + + + ASR+L+ Sbjct: 444 DKDMFLNTNIREMANLPTMSDRENLQKHYYEMLINSSKEVAISFVESQQSS---ASRFLK 500 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 L + + + LD+ L + + K + S +++K Sbjct: 501 HLGIKAKNEHEE---------LDYAGVLFDKSAPALKEEKKIAMEYSFKDVKLSATKLKT 551 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-KNTPEINHLMK 836 + Y + I ++ K P + GT H + EL KR + + ++ + Sbjct: 552 FLTCKRKYYHKYIEHINSHEIPKDMPAEYEVGTAVHEALKELYTKRNSYLSVDDLKRDLN 611 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +D L ++ + + +F E E + + ++ ++ + G+ Sbjct: 612 NELDDVCGASELDKYLIEMQKRRL----DTFCEKEVERFADGWQVK-ECEKSLSCDFAGM 666 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 L+G DR+D+ K G + + DYKTG P +T D QL Sbjct: 667 QLSGVIDRVDV-KDGDMFVLDYKTGSYPLYTAKTFPDATDFQLEFYYLLAS-------TL 718 Query: 955 RKVANLFYIRLKQKFKIDCITNDKK 979 KV+ Y LK + ++K Sbjct: 719 GKVSACGYYDLKDSKIVPESFLEEK 743 >gi|52144190|ref|YP_082639.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L] gi|81689029|sp|Q63EM3|ADDB_BACCZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|51977659|gb|AAU19209.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L] Length = 1171 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEKHYEARPNEKFHGE---------ASVTIRTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQILYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGHAASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|262282992|ref|ZP_06060759.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA] gi|262261244|gb|EEY79943.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA] Length = 1093 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 115/923 (12%), Positives = 260/923 (28%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVATALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + E + ++I G T L+ + G ++ G + Sbjct: 166 SSQIATFAQHILSGETDEELVDLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + ++ Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISNI 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDRSR------------LQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L GN ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGNLTQEELDHFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDSLNHIRRRVMTPLQDFFKSRSQTASWLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN +T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNEETDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRL----------- 719 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 720 -------------LVLGGTDFFDNLKKRGQCYLD--------WTRKLDYTTKQPHYKRPK 758 L N ++ + + R L P+ Sbjct: 659 KKSQASSDDIGSYRALLSQIIELNQEEIDREWTAEEKTFWAVAVRVLRKKLAVEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + + Y + + IL L + P Sbjct: 719 ISKELKTESLQPETLQALYPKDQPLRLSASALNEYFKNQYGYFIKYILGLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINH-LMKQIIDS-HFEKENLPPHIDIIWRHLFH 861 D G H I +++++ +++ + + + + FE + R L Sbjct: 777 DARSHGNFLHRIFEKVLQEDTSRDFDQRLEVAIDETMRETEFESLYNESSESLFTRQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDL-LKSGFV 913 + S + + + IE I P + + + + G DRID L G + Sbjct: 837 DTAKSTGQVLAQS-AGIETIGEETVFGNSKEPFLILEDGRAVSVRGKVDRIDRLLADGSL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+ + E ++ QL AA++ Q + R + Y+++ + Sbjct: 896 GVVDYKSSETKFSYEKFFNGLNSQLPTYLAAIQELQGQQ-EGRDLFGAMYLQMTE----- 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + ++ K + Sbjct: 950 PIVALKDTKELGDAVKEVAKTMQ 972 >gi|74316052|ref|YP_313792.1| DNA helicase/exodeoxyribonuclease V subunit B [Thiobacillus denitrificans ATCC 25259] gi|74055547|gb|AAZ95987.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 836 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 123/831 (14%), Positives = 234/831 (28%), Gaps = 65/831 (7%) Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + A+ LA + L A A L L Sbjct: 7 RAGLDFARALAREAGRAALVAPQITPLKAWAERFAEAAAEPQARRLARLHAALR-HSDWL 65 Query: 203 NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + L+R A T P++ S L+ V Sbjct: 66 GSVDKWALANELLRLIDELSAARAPGATGQPVLDLPPDVSPEREVALIEAVWRT------ 119 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 L + + ++T + + L+ + D L Sbjct: 120 LNAGGDDPQARYAAALDALAADLTRAPRPIFGYALGPLSGGEQAFLARCADHAPLTLYEG 179 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + ++ + + A + EA ++A + Sbjct: 180 DADDPVALTLRQAWLATEPPLQARATALATRFADSPVVEQITVAPAPHLEAEARAVASWV 239 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 L ++ ALI DR ARRV+ L R + + G LSTT+ ++++ L + Sbjct: 240 AAQLRAGRQALALIALDRETARRVRALLERLDVLVADETGWALSTTVAAAVVDRWLECVA 299 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + + L+K P + + + +ALR + + D++ + Sbjct: 300 SDFPHVELLDLLKSPFV---LDDPAARQDQVLQLELALRRQRVAQGAADIERVARQEFGA 356 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + L + + + L + G + + Sbjct: 357 LPAWLASLFDARQRFARTSAPLALWLQRLADSLDQLAARAPLEADAAG----ARVLETLA 412 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 +++ D + N W G L Sbjct: 413 ALGRDLAQDSEKYDFNEWRRWLGLAL------------------------------ESAS 442 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 S + + +R +FD + + G + P F S+ + L L+T+ Sbjct: 443 FVDAGVDSPIVLTSLPAARGRSFDAIAVIGADARHLPALPTPGLF-SQATRRQLGLRTSA 501 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 A D G + + ++ P AS + RL L + L ++G Sbjct: 502 DDAADAVTDLIALLGQGPALLSWRAWNDDEPNPASPLVLRLQALHLAAWSSALPEQGIGE 561 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 +T RP P P PR YS + + L++ PY +AR +L + + Sbjct: 562 PPA----RASTLPGRCTRPAPVVPAARLPRRYSPTAYQTLLDCPYHFFARAVLGIRELDE 617 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIW 856 D++D G H I+ + + L+ ++ F W Sbjct: 618 ADDALDKSDYGNALHRILKRFHDGDPPHDPAQALALLDACAEAEFAALPAYTAAAWRSKW 677 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFV 913 + ++LE +A+ + L G DR+D + Sbjct: 678 SAIAPAYVDAWLEW---AGEGWRHASSESEFAVAVAVAGLGEVTLHGRVDRVDRRGD-AL 733 Query: 914 DITDYKTGDNPKKETAQK--LIDPQLSLEAAAL-KAGSFSQIDCRKVANLF 961 + DYKTG + + QL A ++ I+ VA L Sbjct: 734 AVIDYKTGSAQGLKKKLRMPDEAVQLPFYAWLCNARAAYLPINEAPVAPLE 784 >gi|312279029|gb|ADQ63686.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus thermophilus ND03] Length = 1106 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 119/934 (12%), Positives = 256/934 (27%), Gaps = 134/934 (14%) Query: 130 LYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 + L + L D+ ++ DL L + + L Sbjct: 96 HMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQ-------VEKQEDLV 148 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMST 248 + L+ + + + HL + + +I G T L++ Sbjct: 149 RIFSAAQDLLLAGDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVAL 208 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + + +V A + ++ L L + + Sbjct: 209 LNDKCHQIVVGTYTSQKAYKANFVYGNVYQASVDF------------LRTLAQTYKVIPD 256 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 V N + R + +S T D T+ ++ + + E N++ Sbjct: 257 YVTT-DKEGNLSFARISRLLESRHDFSTVDETVTEQDKH----------ALKVWEVVNQK 305 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTL 425 EE +A ++R L + K+ ++ + +F I +S+ Sbjct: 306 EEVAQVAKSIRQLLADGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHP 365 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + SL + LVK L E +K D Sbjct: 366 LVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDF 425 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + + + K+ L+ ++ + + + Sbjct: 426 TANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKKLVVFLEAV-QLPSQMFELS 484 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S ++ E+ K + + ++ ++ Sbjct: 485 TKASEAE---------------------KEQNEQVWKAFTHILEQVETIFGDESLLVDDF 523 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + I+ + + + + + + + G+ + +PK LS Sbjct: 524 LSILRSGMLACDYRTVPVTVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLS 583 Query: 666 RVMQSDLNLKTAEKYIGQ--------AAHDFEMAN---GTRHLIYTRSLRENNIPTIASR 714 +S +N T E H M+ + L+ ++ N S Sbjct: 584 DEERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSV 643 Query: 715 WLQRLLVLGGTDFFDNL---------------------------------------KKRG 735 +L+ LL LG Sbjct: 644 YLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVA 703 Query: 736 QCYLD---------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 YL + +D T + E +P S + + N+ Y + Sbjct: 704 VRYLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEEEPLKLSATALTTFYNNQYLYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 R +L+L+ + PD GT H + ++ +++ + D FE Sbjct: 764 LRYVLELEELESIH--PDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFE 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 R + I+ S + ++ + + + I +TG DR Sbjct: 822 ILYTEDQESRFSRQILEDIARSTASVLRDNAA-VKVEREEVKFDLLLA-NSIKITGIIDR 879 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +D L G + + DYKTG N QK + PQL AL+ ++D ++ Sbjct: 880 VDRLTDGALGVVDYKTGKN--VFDIQKFYNGLSPQLVTYLEALRQT--YKVDADQLFGAM 935 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+ + + + ++L+ ++ K L Sbjct: 936 YLHM------QVPQLNLAQIGLEKLAAQAHKELT 963 >gi|86153163|ref|ZP_01071368.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|121613506|ref|YP_001001131.1| hypothetical protein CJJ81176_1475 [Campylobacter jejuni subsp. jejuni 81-176] gi|167006024|ref|ZP_02271782.1| hypothetical protein Cjejjejuni_07785 [Campylobacter jejuni subsp. jejuni 81-176] gi|85844048|gb|EAQ61258.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249581|gb|EAQ72540.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 788 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 145/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|163939034|ref|YP_001643918.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis KBAB4] gi|251764543|sp|A9VJ01|ADDB_BACWK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|163861231|gb|ABY42290.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis KBAB4] Length = 1171 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 104/947 (10%), Positives = 239/947 (25%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 167 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + + ++ I+ E Sbjct: 225 LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEVE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPL-----MKQPRFHSQALAHLEMHYEARPNEKFHGE---------ASVTISTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVATEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + + + ++ + + DI I G Sbjct: 562 SLSMFTDVMTTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 622 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQLSYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S ++ YA +A+ L L F D D G LFH + + Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 852 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 K ++ L+ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1019 >gi|118443563|ref|YP_877318.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT] gi|251764559|sp|A0PY66|ADDB_CLONN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|118134019|gb|ABK61063.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT] Length = 1134 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 117/952 (12%), Positives = 256/952 (26%), Gaps = 143/952 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L + + AN N++DII ++ + +L A N + + + + + Sbjct: 106 LKVFATAANQEGFVNNISDIITELKRYDVTATELRATLNLIEDEFLKDKINDISYIFEQF 165 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L N L R + + + I + P +++ + + Sbjct: 166 QESL-HKNYIDSEDELTLLYR-KIDTSKMFDGAEVWIDEFSSFTPQQYKILEKLMEKASR 223 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + +D + + KL + + +DV R + Sbjct: 224 VNITLCMDYYRVIDGTDVFAPTKRTEEKLREILKE----KDVKLDKPIILNNDDVNRFKD 279 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 S Y + P D + D+ +I A N E +IA Sbjct: 280 SSELKYLEENYFKYPYKPYDKT------------------TDDIKIIRALNPYSEVENIA 321 Query: 376 IALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILT 431 + + + A+IT D ++ + I I + ++T Sbjct: 322 KEIAKISMESNIRYRDIAVITRDLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLIT 381 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 S++ K + A+ +K L+ E L + + S +++ Sbjct: 382 SVIEIFNKSWSYEAMFRYLKTGLSNVSKEEVDLLENYVLAYGIRGKKKWQSPWEYGNENI 441 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + S + + A + + + + +T + + Sbjct: 442 LEKINEIRIKVSEPLIKFSSKLKGKSK-ADEICSAVYNFLCSIGVNETIEKWVYKFKN-- 498 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 E + + + + L +++E + +++ I++ Sbjct: 499 ----------------EGNQALAKEYSQIWNMVIELLDQVVEVFKEEELQLKDFVKILSL 542 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + + + R L + G+N+G++P + LS + Sbjct: 543 GFKDYKMGLIPPSLDQVLVSDVERVRTHEIKLLYIIGVNDGIFPAVSKDEGILSDSDRGS 602 Query: 672 L---NLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRSLRE 705 L ++ AE + + +I +R Sbjct: 603 LKKIGIEIAEDTKSKAFEEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVSRFKSL 662 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 S + D + R+ D K + E Sbjct: 663 FPKIAEESDNIAMDYEEENIDLISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSEN 722 Query: 766 QPRT---------------------------------YSFSEIKQLINDPYAVYARRILK 792 + S +++ P+ Y + LK Sbjct: 723 PRWKETLDTVFSAISYTNAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLK 782 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSH 842 F D GT HN+I E + +K + + Sbjct: 783 AKERKIF--ALTPPDLGTFMHNVIDEFSEVVDKSGFKWYEIEDKWCKDTVSEIVDRKAEE 840 Query: 843 FEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA---------KMA 890 + ++ + E +S + I + ++ Sbjct: 841 SAGGIFTSSARYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYPPIEIE 900 Query: 891 IESIG-IHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA-AA 943 + S + L G DR+D L K + I DYK+G + + QL A Sbjct: 901 LSSGEKVKLIGRIDRVDKLDMEKKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLDAI 959 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 L + + Y+++ D I K+ S +E+ ++ +K L Sbjct: 960 LTNEELKDREEALPGGVLYLKID-----DPIIKGKRNLSEEEIQDEIMKALK 1006 >gi|213965910|ref|ZP_03394101.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46] gi|213951488|gb|EEB62879.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46] Length = 1119 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 126/1046 (12%), Positives = 285/1046 (27%), Gaps = 130/1046 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--------KKSTILPIIKSLGDVVEEKFTADLLLSY 97 S+ + +K A ELR + + +++++ + + Sbjct: 83 SILVVSQSKEAAAELRRDIDRRFACEVGEGGSVGAGQGGMVRAVHSLAYAVVRDAAVSRG 142 Query: 98 NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 P ++ AR + R L +D P + ++ + D + Sbjct: 143 EPEPSLT------TGARQDAVVRQLLAGHAEDGGAYWPER-LRPALPLVGFSRAVRDFLL 195 Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT-ERLVELNASSPVGYQIALMR 216 L L + W A F+ + LNA+ V + + Sbjct: 196 RAAERGIDAPRLQQLGVDYGIESWCAAGKFMAEYQQTMRLAWEPSLNAAEIVSAALMELD 255 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 A+A+ L + K +++ + P ARL+ + A++ D + Sbjct: 256 ADAQALARWGKSVVLVDDAEHLSPEAARLVDRFVSQAAVAVIT--GDEDQSVFHFRGANN 313 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 T + H Q S D D+ +RL + Sbjct: 314 DYLRGTGKAEYKAIHLQQSYRCNADIADLANAVSQRLPKA----PAYRGIAGSVGTQEAR 369 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393 ++ + S V + +ER + ++A R + K A+I Sbjct: 370 ESEVGSNSETAAAEDSYAAKSAVKIAIHPSERAQRATVADYFRRLHIDEGVAWKDMAVIV 429 Query: 394 ADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + L+R G+ + I I LS L L A D + + Sbjct: 430 RSGAGESSLFRALSRAGVPVQIDPTDIVLSHQRLVRALMVALRATMNQLDDVEWDEFLSG 489 Query: 453 PLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 PL ++ L R +L I+ L +++ ++ + + Sbjct: 490 PLVNMDPIVKERLLRGIRKADLFGGAAMTQLIGILKADGLATEQLELIESLSQRERQALQ 549 Query: 512 LSEEDKELAVLLVDHILQC-------------------ITPLVTYKTNKNSTCGNLSISD 552 + + A + ++ + + +++ D Sbjct: 550 VPLDLLSAAREALRDGVEATLWAIWQSTGLADHLVAASLRGGTAGASADRDLDAVMALFD 609 Query: 553 WT----------------------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + +L + ++ G+ ++ Sbjct: 610 FAGDRVELNPKLTVDGFIASVEEQELPIGARDRSGVERDAVRILSAHAALGRQWKAVAVV 669 Query: 591 IIETG-------SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 ++ G + E+I ++ I+ + + + D Sbjct: 670 GVQEGQWPSLGVTGSVMKQNEFIGLVDHGIEPREYINSMADALAEERRLLHVAVSRASDR 729 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG---------- 693 ++L ++ + + + A++ +A + A Sbjct: 730 VLLTAVDSPDDVGVPSPFIIELVEKLGNSATELAKQSEASSAANGVGATANEANVGKPDV 789 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR-GQCYLDWTRKLDYTTKQP 752 + L L D ++R L +++ P Sbjct: 790 AEAEDVAWAGEGLPRVLSVESLLAELRAAVVDDAETETRRRQAARQLARLAQVEVAGAHP 849 Query: 753 -----HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 P + +P + S+++ +N P + Sbjct: 850 DTWWGLRAPSTSKPVNDKKPMRINPSKVEATLNCPLKAMLDK----------SAPTSAMY 899 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 G+L H + + K + I F + P WR + ++ Sbjct: 900 LGSLLHQAVEAVAKGVTVP-------EAQSEIRRVFGDLSDDPE----WRKRTEE--ETW 946 Query: 868 LE--HEEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-N 923 L + + +K I +P K+ I I + G DR+ G V I D KTG Sbjct: 947 LTGLEDWQRWIETKKDIGTEVPVKVNIND-DIVIVGRIDRLIEDADGAVQIVDIKTGKTA 1005 Query: 924 PKKETAQKLIDPQLSLEAAALKAG---------SFSQIDCRKVANLFYIRLKQKFKIDCI 974 P + + QL+ AL G + + + + + + + ++ I Sbjct: 1006 PSGKEVEGHA--QLATYQLALSKGKLVESGDGLAVNNGEGIEQSGAYLVFPRKSHNKTII 1063 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTL 1000 T+ ++ ++ + + ++ Sbjct: 1064 TSREQSKLTEDKLADWERRVEQVARA 1089 >gi|228919961|ref|ZP_04083315.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228964185|ref|ZP_04125308.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228795535|gb|EEM43019.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228839674|gb|EEM84961.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 1171 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 252/977 (25%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTVTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEAHYEARPNEKFNDE---------ASVTISTAANLR 321 Query: 369 EEAISIAIALRMSLDE---NKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + + + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRKLVADEKYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEELRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGDEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + G T + + + + + +E Sbjct: 622 EGMLSDEEREVLGAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S ++ YA +A+ L L F D D G LFH + ++ Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKKIADKLLRENRTW 852 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 K ++ L+ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAQTWMKKGHTASPAGVLYFHI-----HNPIVEMK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|153951609|ref|YP_001398783.1| hypothetical protein JJD26997_1829 [Campylobacter jejuni subsp. doylei 269.97] gi|152939055|gb|ABS43796.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei 269.97] Length = 788 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 86/457 (18%), Positives = 144/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-T 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMNNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + + + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IRNFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|229137927|ref|ZP_04266526.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26] gi|228645584|gb|EEL01817.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26] Length = 1166 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + + + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I + P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|229022698|ref|ZP_04179222.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272] gi|228738510|gb|EEL88982.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272] Length = 1166 Score = 165 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 105/947 (11%), Positives = 241/947 (25%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 162 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + + ++ I+ E Sbjct: 220 LMKLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + E L Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 436 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + S + ++ + + DI I G Sbjct: 557 SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 617 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ L+ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSTLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI 1014 >gi|206976601|ref|ZP_03237507.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97] gi|217958718|ref|YP_002337266.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187] gi|222094862|ref|YP_002528922.1| ATP-dependent nuclease, subunit b [Bacillus cereus Q1] gi|251764582|sp|B7HZR4|ADDB_BACC7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|251764584|sp|B9ITE8|ADDB_BACCQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|206745284|gb|EDZ56685.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97] gi|217064274|gb|ACJ78524.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187] gi|221238920|gb|ACM11630.1| ATP-dependent nuclease, subunit B [Bacillus cereus Q1] Length = 1171 Score = 165 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L E + + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLEAHY---------EARPNEKFNGEASVTIHTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + + + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I + P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVK 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|269468140|gb|EEZ79847.1| hypothetical protein Sup05_0661 [uncultured SUP05 cluster bacterium] Length = 826 Score = 165 bits (416), Expect = 5e-38, Method: Composition-based stats. Identities = 99/693 (14%), Positives = 215/693 (31%), Gaps = 94/693 (13%) Query: 366 NEREEAISIAIALRMSLDENKKKSALITA--DRNLARRVKLELTR---------FGINID 414 +E S A + N K +I + L R K + + + Sbjct: 198 TTEDEIKSAAEWAKELHASNPSKQIVIVSPKLNELHYRFKSIFDQVFFNTLNETGKKSYN 257 Query: 415 ISAGIPLSTTLHSSILTSLLNA----IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 IS G+PL L S+L ++ P E+ Sbjct: 258 ISLGLPLDKYPLIQHLLSILELSNQLQKNRIKATTFNAVITSPYIVSAQNEQSARAL--- 314 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + + + +++ ++ +L + Sbjct: 315 -------------------------LVNKVLSLSKTNFKLWEVKDSLSNCPILEQTLRVI 349 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 S W LQ+ R L + ++ K + Sbjct: 350 SDG---------QISHQQSHDQWLLSFNQRLQSWGFATDRVLNSSEYQLFNKYQQTSLGL 400 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + +A + ++ + + + + K+ + ILG+LE+ L FD + G+ Sbjct: 401 NLLSQYEKSVSADQALEALKNWLSQVMFQAQSAKTP-IQILGSLEAEGLYFDAAWVLGMT 459 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQAAHDFE--MANGTRHLIYTRSLRENN 707 P + F+ + + + + I Q A D + + +I++ + N Sbjct: 460 NDFLPASLNSPRFIPFDIATKHQIPRSNYDLITQDAKDTTDNLMALSNQVIFSYAQTHNE 519 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 S + + + + P + + Sbjct: 520 SEQQGSPLI-EFNNVVEPTIQN----------------KTAHVATEFTNDSTAPKVSNKD 562 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--IN 825 + S +K + + + L + +R ++G + HN++ E+ +K Sbjct: 563 VSGGVSILKNQMACAFKGF-THRLNIRRSDAPHIGFNRIEQGEIIHNVLEEIYQKISCRE 621 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPH---IDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + + +K II S ++E + R+ ++ + F+ E++ + Sbjct: 622 QLLSCNDQDLKAIIKSKVDQELTNYSKSNFIEVERNRLLELVNQFILSEKQRD-EFRVLS 680 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEA 941 +K+ I + + DRID +++G I DYK G + +PQL + Sbjct: 681 TEQESKVDIAGLAFDV--RLDRIDEMENGDQIIFDYKIGKTSVSNWCGDIIKEPQLPIYT 738 Query: 942 AALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITNDKKK--YSADELSEKSLKNLIEI 997 + K F ++ K++ Y L + ++KK + DE E + L + Sbjct: 739 LSNKTQGICFIELASDKIS---YKGLSRDKDSLPKQSNKKTTCAAWDEQLEIWQQKLNKT 795 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 Q G+ + + S+ + EYD L R+ Sbjct: 796 SLNFQQGQ----AQVLPSKNACEYCEYDSLCRI 824 >gi|322389862|ref|ZP_08063403.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903] gi|321143443|gb|EFX38880.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903] Length = 1088 Score = 165 bits (416), Expect = 5e-38, Method: Composition-based stats. Identities = 120/982 (12%), Positives = 285/982 (29%), Gaps = 147/982 (14%) Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ E L I L + L + + + L + ++T + Sbjct: 72 LNQVFEEQPLDDIGLGMLFYKALSQMKDQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + DL L+ + L + +E LV+ S L + E L + Sbjct: 132 FTDLELLEEAEKRED-------LLAIFEAVSEMLVQHRYESQSKIAFFLNQVEEGQLEEQ 184 Query: 226 TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + I++ G T L+S + G ++ G+ + + + +S Sbjct: 185 LQDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YTSEKAYRASFREGNLYQAS 240 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 L +L +I+ + + S R + Sbjct: 241 VDF--------LLQLAKTFEIQPQYCGQAIEDSFSRITR-----------MLEARYDFSQ 281 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402 +E+++ + + V L + + ++EE +A ++R L + + ++ D + Sbjct: 282 VEDELEDQDRTA--VQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339 Query: 403 K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ I + + ++ SL + L+K L Sbjct: 340 LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + ++ + + H P +R + + E Sbjct: 393 ---------------YSDLTQAEVDAFEQYLRFAEVKGATKFHKPFTSNRQGKFNLEKLN 437 Query: 522 LLVDHILQCITPL-----VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + +++ + P + L + ++ ++++ L+E Sbjct: 438 TLRERVVEPLVPFFSQRKQKVTQLLTAFTEFLQEAQLSQNLQALIKDLSLEEQE-----R 492 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 +++ K + ++ + +++ ++ + + + + Sbjct: 493 YDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687 L + GL + +PK LS + LN T E Q Sbjct: 553 EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVTSENLKKNRFV 612 Query: 688 FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737 L+ + N + S +L L + + + + Sbjct: 613 AVSLLNAATNQLVLSAPSLVNEMKDSVSPYLVELTKEPIAIEWTTKQAQASSDDIGTYRA 672 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762 L +L + Sbjct: 673 LLARVIELHQEEIASELSAEEASFWGVAVRVLRKKLAAEGIQIPQISTELKSRQLQSDTL 732 Query: 763 ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 E + T S S + + YA Y R +L L + PD G H I + Sbjct: 733 QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFEK 790 Query: 819 LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 ++K ++ + + ++ F++ R L + + Q+ Sbjct: 791 VLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLLLDTAKKTGRVLAQ-QN 849 Query: 877 SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927 IE I + + + L G DRID L+ G + + DYK+ + Sbjct: 850 GIETIGEETLFGGSTHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ++ QL +A++ Q + + + Y+ + D + + KK + ++ Sbjct: 910 KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPLVDLKKTKTVEDAI 963 Query: 988 EKSLKNLIEIVTLLQNGEQPFI 1009 +++K+ + L + P++ Sbjct: 964 NQTMKS-QQYKGLFMADQAPYL 984 >gi|170782261|ref|YP_001710594.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156830|emb|CAQ01997.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 1089 Score = 165 bits (416), Expect = 6e-38, Method: Composition-based stats. Identities = 129/1046 (12%), Positives = 254/1046 (24%), Gaps = 127/1046 (12%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L + E L+P A V + P++ A LR E G T+ P+ ++ V Sbjct: 53 LRELVAERILAQGLDP---AEVLVLAPSRAAATRLRDELALRVGV-PTLGPLARTATSVA 108 Query: 86 EEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 E + P + + ++ +A L+ P P L + Sbjct: 109 FEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGHEEL------GTGPAWPDPLGVEVRR 162 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L +++ E + + L L W+ AA+F + + Sbjct: 163 LRAFRTELRELLMRATEEGVRPDALAELGRAHDVPEWIAAAEFAREYEDVVDSF--RGDH 220 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 + + ++ + AT L+ +A GA V+ D Sbjct: 221 LDSAELLAEAVLLVSRGEALTGIRLVVADDLHEATVATLSLLRALA--ARGADVIAFGDP 278 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + A + +L +L L + L V + Sbjct: 279 DVAAATFRGAEAS-----------------ALGRLSTVLGLPGLRTLVLDRVHRQPPALR 321 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + S + + + + +IEA E +A LR Sbjct: 322 ALTSAVTARIGAAGAGRQRQAGSAPGLVDDADP-IQVIEAPTRALELARLARRLREEHLL 380 Query: 385 NKKKSA---LITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK- 439 A ++ +L +V L + + AG L L + L ++ + Sbjct: 381 GGVPWARMVVLVRSGSLVPQVARSLATAEVPTRTAVAGRALRDDLAALALIRAVDVVLGR 440 Query: 440 -LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI-------MDLKSL 491 A L PL + R E +A G+++S ++ Sbjct: 441 VPLTPDIAAELATGPLGGLDGVQLRRLRLAMRQEELAGDGHRSSDELLVEALAAPGRLET 500 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST-----CG 546 + A + +R L+ H+ + + T Sbjct: 501 LDLAPARRLARLARTLQGARELAAADGTIEELLWHLWEGSGLATPWFEQALQTGIVADQA 560 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT----------------------- 583 N + L + V + R + E G Sbjct: 561 NRDLDGVVALFTAARRFVERNPGRPASDFVEELLGAEVPEDTLSPQPLADTVLVATPSAV 620 Query: 584 --------------------------LSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L A+ E +++ + Sbjct: 621 VGAGYEVVAVAALQECVWPNLRLRGSLLHPPRLSAVARGLDGADVDERAEVLGDELRMLA 680 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + + + ++ + A+ +++ + L ++ Sbjct: 681 LAVSRASRVVVLSATANDEEAPSPFLRLVPPAPGQAEAEAGAEAGRVAKDAPAALRIRPD 740 Query: 678 EKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + A E+A R + R + A R G + Sbjct: 741 HPLSLRGLVGALRRELAVVHRDAVLLDDGRVVSGDRTARRPADATRERGLAAASALARLA 800 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + Y ++P P S S ++ P + + Sbjct: 801 AEGVTGADPAEWYGLREPSTTEPVVDLTDPEARVPVSPSRLEAFERSPLNWFIDQASGGS 860 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 GT+ H ++ E P E+ Sbjct: 861 -------TSTAMGIGTIVHAVMEEASLDPDADLRPPALEARLDARWGELPFESPWVGERE 913 Query: 855 IWRHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + F + ++ + L G DRI+L K Sbjct: 914 RRQAGELIAGVSGYLRDFAAD------GGRMLAAEGGFELEVGVA--RLRGKIDRIELTK 965 Query: 910 SGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQ 967 G V I D KTG + P + QL A GS Q+ + + Sbjct: 966 EGAVVIVDLKTGRHYPTRAEIPAHA--QLGSYQLAFTEGSLEQVPAEAPSGGAKLLYVSG 1023 Query: 968 KFKIDCITNDKKKYSADELSEKSLKN 993 + ++ E + Sbjct: 1024 GTRGLPYRELPQEPLTREELDGFRAR 1049 >gi|47567600|ref|ZP_00238311.1| exonuclease RexB, putative [Bacillus cereus G9241] gi|47555795|gb|EAL14135.1| exonuclease RexB, putative [Bacillus cereus G9241] Length = 1171 Score = 165 bits (416), Expect = 6e-38, Method: Composition-based stats. Identities = 106/977 (10%), Positives = 258/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGGMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 167 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVKGAEIYIDGFHSFSPQELEIVRQ 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMVCGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + VA+ A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKFHGE---------ASVAIRTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + + + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADENYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 562 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 621 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 622 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 681 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ ++ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSAVVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRID--LLKSGF-VDITDYK-TG 921 + + +P M ++ + L G DR+D ++G + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEVN 1027 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1028 GDASEAEIEKEILKKFK 1044 >gi|229028910|ref|ZP_04185011.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271] gi|228732481|gb|EEL83362.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271] Length = 1166 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 107/977 (10%), Positives = 256/977 (26%), Gaps = 156/977 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L + + L+ + I I G P ++ Sbjct: 162 QLLYDDFERAL--IGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQ 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMICGARVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTIHTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGK 436 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D + + + ++I ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEALRVRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + S + ++ + + + +I + I + + ++ Sbjct: 557 SLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMD 616 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------- 678 +L+ + + T + + + + + E Sbjct: 617 EGMLSDEERDVLSAAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLL 676 Query: 679 ----------------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDTIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 847 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ L+ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSVLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + Q+ + + + + A + Y + + I K Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI-----HNPIVEMK 1022 Query: 979 KKYSADELSEKSLKNLI 995 S E+ ++ LK Sbjct: 1023 GDASEAEIEKEILKKFK 1039 >gi|225868712|ref|YP_002744660.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp. zooepidemicus] gi|251764627|sp|C0MGY7|ADDB_STRS7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|225701988|emb|CAW99552.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi subsp. zooepidemicus] Length = 1073 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 129/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E L + L ++ ++ DL L + D + I Sbjct: 98 QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 +K E+L+ L A + + ++I G T +L++ + Sbjct: 152 TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ +I + K +S Q K + Sbjct: 210 NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + + R + ++ D + + + S V + +A N++E Sbjct: 257 YTTSEKVFDVSFSRLTQLLEANHDYSKLDWQLSAKDK----------SKVVIWQALNQKE 306 Query: 370 EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E +A A+R L + + L+ + ++ +F I I P+S Sbjct: 307 ELEYVAKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL I L+K L E L + + L ++G Sbjct: 367 VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L S + + + + ++L + L+T+ Sbjct: 426 TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +++ R+ EE K + + + K + + Sbjct: 480 FEALA---------------GSRREADREKDEEVWKAFTGILETFYQVFGQEKMTLADCL 524 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +I + + + I + + GL+ +PK T +S Sbjct: 525 ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584 Query: 667 VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 + L++ + E K Q A A T+ L+ + N S Sbjct: 585 QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643 Query: 715 WLQRLLVLGGTDFFDNL------------------------------------------- 731 +L+ L+ LG Sbjct: 644 YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703 Query: 732 -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 ++ L + T +P QP + S S + N+ Y + Sbjct: 704 LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSHQPLSLSSSALTVFYNNQYKYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844 + +L L PD G H I + K R + + ++ F+ Sbjct: 764 LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRTDAAFDQKLGAAIAAVNQQSAFQ 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + I++S Q ++ ++A+ + + G DR Sbjct: 822 QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 879 Query: 905 IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ID L G + I DYK+ + PQL AALK + + Y+ Sbjct: 880 IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +++ D+L + K L + + ++++ + + Sbjct: 934 HMQEPRLSLSDFKVLD----DQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986 >gi|295103245|emb|CBL00789.1| ATP-dependent nuclease, subunit B [Faecalibacterium prausnitzii SL3/3] Length = 1120 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 108/970 (11%), Positives = 240/970 (24%), Gaps = 133/970 (13%) Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 A+ ID +++ + L L + L + + + L P Sbjct: 120 AETIDELKSAGLSGQQLQELARDCGSE--SAKLGELALIFQGYESLLAGTG-MDPADRLE 176 Query: 213 ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + + I RLM + V D Sbjct: 177 LAADRLEAALARDELPDFLREREVFIDEFDTFNVPKKRLMGAMLAALPAVTVALCED--- 233 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + L +L G Sbjct: 234 --------GAPMQPGDLELFSGAKQVAAQLRQLARK----------NGAQVAAPELLRRD 275 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + P + + P A + E A + L Sbjct: 276 LRHKDAPGLDALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMRQGVRCG 335 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 K + + V+ E I + + ++ + +LL + + + Sbjct: 336 KIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGADMTEQL 395 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L K L PE S + ++ + Sbjct: 396 TVLAKTGLCDLTEPEVCALENY---------AYTWSPNAAAWRAEFTKSPRGFGDAELTE 446 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A ++ + L + N+ + ++ K Q Sbjct: 447 E-----DTLNLTRAENARKKLVTAVDTLRGKVRSANAEQISRALYFCLKELGAEGQQAAQ 501 Query: 567 DEH-----RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 E E + L ++ E+ D+ L+ + Sbjct: 502 VEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFGLLLRSSDLGHI 561 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-----SDLNLKT 676 + + + + RL D + + GL EG +P A++ L+ + ++L Sbjct: 562 PQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCTPAESGLLTHADRDLLMAKQIDLPD 621 Query: 677 -AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 E + + F A L + + A + L Sbjct: 622 CFENRVVREQVCFYKALTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLA 681 Query: 734 RG-----------------------QCYLDWTRKLDYTTKQPHYKRPKPFPPLE------ 764 + + +R + PP + Sbjct: 682 ATPADGLDVLGGGWPLTERERASLTEALRAPGEGVQTPRGLALLQRMEQDPPRQVQDLPT 741 Query: 765 -----AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + S S++++ Y + + +L L + + GTL H ++ Sbjct: 742 LEALLGRRLHISPSQLEKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMA 799 Query: 820 IKKRINKNTP-------------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISH 865 + ++ P + L ++D + + K Sbjct: 800 LDPHPGEDNPCAGLRPFLELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMT 859 Query: 866 SFLEHEE--KIQSSIEKIFVNIP---AKMAIES--------IGIHLTGFADRIDL--LKS 910 S L + + QS + + + + A+ + L G DR D Sbjct: 860 SLLCYLRDEQNQSQFKPVACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDD 919 Query: 911 GF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 G V + DYKTG + +D Q+ L +L + + + A + Y L Sbjct: 920 GTRWVRVVDYKTGSKKLDLKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLY--LLA 977 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQ 1021 + + + + + +++ +I + E + + + + + Sbjct: 978 DPAPQTLPRGQAARAVEYQLDGLVRDEQKIFDAMDADETGKYLPFGYRNGAPSPYQKDKR 1037 Query: 1022 SEYDHLARVA 1031 ++ L+R+ Sbjct: 1038 ADSAKLSRIR 1047 >gi|229016489|ref|ZP_04173430.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273] gi|228744756|gb|EEL94817.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273] Length = 1171 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 106/947 (11%), Positives = 250/947 (26%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 167 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + + ++ I+ E Sbjct: 225 LMKLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSQALAHLETHYEARPNEKFHGE---------ASVTISTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR------------------ 466 + S L I + A+ VK L K R Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441 Query: 467 AKNALELVALRGNKNSYDIMDL----KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + R ++ D ++ + + ++I ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + S + ++ + + DI I G Sbjct: 562 SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 622 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-- 828 S S ++ YA +A+ L L F D D G LFH + + + + +N Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADRLLRENRTW 852 Query: 829 --------PEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 ++ L+ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSTLVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHI 1019 >gi|309810402|ref|ZP_07704236.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] gi|308435642|gb|EFP59440.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] Length = 1117 Score = 164 bits (415), Expect = 7e-38, Method: Composition-based stats. Identities = 122/1028 (11%), Positives = 274/1028 (26%), Gaps = 122/1028 (11%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 + L+ + R D + PT+ A LR+ G S+ PI + Sbjct: 90 TLAVELVAQAVEGGARPD--------ECVLLSPTRVAAGALRARVTTRVGGTSS-EPIAR 140 Query: 80 SLGDVVEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + + ++ ++ + L L+ R L + Sbjct: 141 TPQALAFGILRMRAAMDDLPAPRLLAGPEQDVVLKELLEGHRLGLG------AAPAWPED 194 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L D+I + + L L E W+ AAD L Sbjct: 195 LAEALTTRGFRNELRDLIMRAVEWDVSSDHLRRLGAEHGRDEWIAAADVLDEYDDV--TA 252 Query: 199 LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP 253 L A P A +A E+ + ++I + A+ ++ + Sbjct: 253 LSRPGAFDPAWILGAAAQALRENETLRERVRAQLRLVVIDDAQELTRASVGFLTELVGPG 312 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 ++L D + + + ++ S L +RL Sbjct: 313 QRLVLLGNPDVTV--QAFRGADPRYLEQVAAQHGASRRF---------VLGYGHRQPRRL 361 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 V + R + + + V + + +EA Sbjct: 362 AEVVERVTARIGSVDGIAHRSVVT----------------RPGGGVDVALLRSGAQEAAH 405 Query: 374 IAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSI 429 IA LR + ++ K A+I ++ L + + A + L Sbjct: 406 IAGVLRRAHLKDGVAWKDMAVIVRAAAGTSALRRALNAAKVPVAVPPASLALRDEPAVRP 465 Query: 430 LTSLLNAIFK--------LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 L + D A A+ + + L LR Sbjct: 466 FLHALEIVTSRTRGSEQAPVDGDADASRAGVSADLALDLLTSPLGGADPVVLRRLRRLLR 525 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 ++ + V D + ++ + + + Sbjct: 526 REELAAGGNRVSDELLGACLLEPALLVSLGPEAAPARRVSRVLAAGAAALRAAPPHDDAE 585 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + S + + R +L ++ F + + Sbjct: 586 HVLWQMWQASGLAEAWEANALAGGISGTRADRDLDALLALFAAAAAFVERLPGAGVADF- 644 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + ++ + G+ + + ++ S + T+++ G+ EGVWP + Sbjct: 645 ---LDHVRSQDVPGDRLVAAAPDEDAVALVTAAGSAGGEWHTVVVAGVQEGVWPDLRLRG 701 Query: 662 PFLSRVMQ--------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 L L + A + + R + ++R+ + S Sbjct: 702 SVLGSEDLVDILSGRGRSLPARQAAVRHDETRQFAMAMSRAREHVVVTAVRDEDE--QPS 759 Query: 714 RWLQRLLVLGGTDFFDNLKK-----RGQCYLDWTRKLDY--------------------T 748 +L + L D +++ R + Sbjct: 760 VYLDIVDPLAPGAAADAMREFTPVARPMTLAGLVAEARRMLADQDEAVRDEGARRLARLA 819 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFI----PHFKKDP 803 P+ + L ++ ++ + P + L+++ F Sbjct: 820 EHDVPGADPEQWWALVSRSDDRPVRPPQEWVRVSPSKIEGFHRCGLNWLLTTNGGFGPSV 879 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHK 862 + GTL H + E + LM + ++ + + L + + Sbjct: 880 GASTIGTLVHELAEEF---------ADEPALMDEALEKRWPRLGLGDSWVSRGEKARAQS 930 Query: 863 ISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 + + + + + ++G DR++ + + DYKTG Sbjct: 931 MVKKLQGYLGDAAATGWAGEAAERRFSAIVGRA--KISGSIDRLEHHPERGLRVIDYKTG 988 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + K + + PQL+ AAL+A +F R A ++L Q + + + Sbjct: 989 SS-KPKDEEVAAHPQLAAYQAALEADAFG--PGRPSAGAALVQLGQAAGTGANSTARVQA 1045 Query: 982 SADELSEK 989 ++++ Sbjct: 1046 QPPLVADE 1053 >gi|88596293|ref|ZP_01099530.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88191134|gb|EAQ95106.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 788 Score = 164 bits (415), Expect = 7e-38, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 145/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N N ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|86149363|ref|ZP_01067594.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840145|gb|EAQ57403.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|284926689|gb|ADC29041.1| hypothetical protein CJSA_1405 [Campylobacter jejuni subsp. jejuni IA3902] Length = 788 Score = 164 bits (415), Expect = 7e-38, Method: Composition-based stats. Identities = 87/457 (19%), Positives = 145/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N N ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|251810339|ref|ZP_04824812.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|282875535|ref|ZP_06284406.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis SK135] gi|251806147|gb|EES58804.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|281295562|gb|EFA88085.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis SK135] gi|329737712|gb|EGG73955.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis VCU028] Length = 1159 Score = 164 bits (415), Expect = 7e-38, Method: Composition-based stats. Identities = 140/1043 (13%), Positives = 293/1043 (28%), Gaps = 151/1043 (14%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G + E + L ++ L A L ++ + + D L L S Sbjct: 59 GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200 A L++ LA+ I + E L+ L + + + K R+ Sbjct: 113 QAQYYGLSEKLAEQIQDFKKYNVTPEHLNQLIENHSIQTRTKHKLEDISLIYKQLESRM- 171 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + K + I G R++ + H VL Sbjct: 172 -NGEFITAEDSLQQFIEILSQSQWIKKAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D HP K + L + Sbjct: 231 TTDGSH------------------------HPFSLFRKPSEVL------SHLEDIANRLN 260 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALR 379 + +F + D++N + + + K + V + E+ + REE +A + Sbjct: 261 INLNKTYFNTFYRYNNDDLKNLENGFDALQFTPKHHQNHVKIFESSSMREEINEVARRIL 320 Query: 380 ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 D + A++ D + A + L + I +I ++ +L SLL Sbjct: 321 KDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEV 380 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I A+ L K + F + LE L +D +D+ Sbjct: 381 IRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQF 438 Query: 497 ATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552 + +H + +E +L +++ +L + T K S +L + Sbjct: 439 SRMGRKSHQLTEGHQALYKEVIKLKKNVINKVLYFEQAMNEAHTVKDYATSFYESLEYFE 498 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 +T + L + ++ L + ++ + +++D+ Sbjct: 499 LPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIG 557 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ++ + + I +++ N + + G+N+G+ P+ + + ++ + + Sbjct: 558 LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYV 617 Query: 673 NL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR---- 718 T++ A +A + ++ SL N+ S +L + Sbjct: 618 EDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKEL 677 Query: 719 --------LLVLGGTDFFDNLKKRGQ--------------------CYLDWTRKLDYTTK 750 L L ++ Q +LD + + Sbjct: 678 FYDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDYRWLDAYLAIRDDDQ 737 Query: 751 QPHYKRPKPF----------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 L + S S + P+ YA L+L+ Sbjct: 738 LNQGLDYLTTSLKYDNETVQLNEILSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLN 797 Query: 795 FIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----E 846 K + D G +FH+++ + N +T I L K+ ++ K Sbjct: 798 ER--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNL 855 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MA 890 I + L+ + S + + Sbjct: 856 LNSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLIT 915 Query: 891 IESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL 944 + I I++ G DRID I DYK + + Q+ + Sbjct: 916 NQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIV 975 Query: 945 ----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + + I K L Y + + D+ + +KN ++ Sbjct: 976 LQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSG 1028 Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023 L N +Q + L + + S+ Sbjct: 1029 LLNRDQEVLDALDIRLEPKYNSD 1051 >gi|323692611|ref|ZP_08106843.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum WAL-14673] gi|323503308|gb|EGB19138.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum WAL-14673] Length = 793 Score = 164 bits (415), Expect = 7e-38, Method: Composition-based stats. Identities = 95/651 (14%), Positives = 185/651 (28%), Gaps = 101/651 (15%) Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 +L + L + K + ++ +K L LE AL S+ Sbjct: 4 PMVELLRAALEVMQKNFSYESMFRYLKTGLVTDKQEMLS------RLENYALALGIRSFK 57 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 D+ + R A N + ++ + + L + + Sbjct: 58 RWDMAWEAVYRGAELINLEELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEAL 117 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + D+ + + + +LF +I E Sbjct: 118 HIEEKLQDYEAEFRET--------GEVSLEKEYSQVYGLVITLFDRITALLGDEAVGKKE 169 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + DI+ + V + + +RL + L G+N+G+ P + + L Sbjct: 170 YSDILDAGFEEIKVGLIPAVVDRVVVGDITRTRLSHIKVLFFAGVNDGIVPSASGRGGIL 229 Query: 665 SRVMQSDLN------LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRE-NNIPTIASRW 715 + + L TA + + + L + + + S Sbjct: 230 TEAERRSLKSRQVELAPTAREEGFLQRLYLYLVMTKPSDRLYLSYAASSSDGKSLRPSGL 289 Query: 716 LQRLLVLGGTDFFDNLKK---------------------------------------RGQ 736 + ++L + + R + Sbjct: 290 IGQVLKMFPEKRVMRADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLRSE 349 Query: 737 CYLDWTRKLDYTTKQPHYKR---PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 Y D R+L + + R + + S + ++Q + YA + L+L Sbjct: 350 LYRDELRQLVEASFYTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGLEL 409 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFEKE 846 + TD G LFH I K+ +N + L+ + + + Sbjct: 410 SER--PVYELAATDIGNLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDY 467 Query: 847 N---LPPHIDIIWRHL-FHKISHS--FLEHEEKIQSSIEKIFVNIPAK-------MAIE- 892 + + +I+ + E+ + E + M I Sbjct: 468 GNTIMSSSARNQYLERKVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPV 527 Query: 893 --SIGIHLTGFADRIDLLKSGFVD---ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 IHL G DRIDL + G + I DYKTG A + QL + A Sbjct: 528 SKEEAIHLKGRIDRIDLCEDGDLLYLKIIDYKTGKTKFDLMEAYYGLQLQLVVYMDAALE 587 Query: 947 GSFSQIDCRKV--ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + +KV A +FY + D + KK+ +E + L+ L Sbjct: 588 KEQRKHPDKKVVPAGIFYYNIA-----DPMVERKKEMDEEETKQAILEQLR 633 >gi|225872584|ref|YP_002754039.1| hypothetical protein ACP_0930 [Acidobacterium capsulatum ATCC 51196] gi|225793840|gb|ACO33930.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC 51196] Length = 905 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 101/719 (14%), Positives = 212/719 (29%), Gaps = 94/719 (13%) Query: 366 NEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGIN----------- 412 +ER E A LR L+ N + + L T + + Sbjct: 218 SERAEIEGCAQWLRERLEANPEARMAVLCTQVEARRGAIDRVFRQVLKPGSQSILTPHTE 277 Query: 413 ---IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + + G PL + L + + L+ G E R Sbjct: 278 GRVYEFTLGRPLGQQPVARAALLALRWLRHPLTQADASWLLLSGFLCGGAEE----RMIC 333 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 A A+R ++ ++DL+ ++ + L D + Q Sbjct: 334 ARADAAMREQESVAPLLDLQQVLAPTVRY-----------------------RLPDAVRQ 370 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + V + + W++L L+ + + ++ ++ + + L Sbjct: 371 QLQAGVQFADTHGFARRRRAPGAWSELARLALEAMGWPGGEEADSVQYQTQQRWEKVLEE 430 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + +++ ++ R P+ + + ++G +E+ FD + G Sbjct: 431 VARLDLHEEAMSYEDFMALLERQSMDTLFAPESLDAP-VQVMGPMEAAGQEFDGVWFLGT 489 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTA---EKYIGQAAHDFEMANGTRHLIYTRSLREN 706 + WP +P L +Q + A + + + +I + + + Sbjct: 490 TDAQWPAAGRPHPLLPLAVQRSAGMPHAQRDDDWQLAQHVTERILKSAGEVICSYARHNS 549 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + S + RGQ + T + + Sbjct: 550 DGELRLSSL---------------MAGRGQEIVLDTVAISAAESELESYEDAGLVSFADG 594 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 +K P+ +A R L+ + + D RG L H ++ + + Sbjct: 595 VAPGGAELLKDQAACPFRAFASRRLRATELRESQWGLDAMQRGNLLHEVLRRFWTEEEPR 654 Query: 827 NTPEINHLMKQIIDSHFEK------ENLPPHIDII-------------WRHLFHKISHSF 867 + L + ++D + E + + + + Sbjct: 655 RIDGLEALRQTMLDGQLGEVLRVHTERVFARLRQLAGEDRWMGAYLDAEEQRLRLRLEEW 714 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKK 926 L +E K + + + L ADRID L+ G + DYKTG+ PK Sbjct: 715 LRYEMKRRP-FVVEACERNLG-PVRVGSLELRLKADRIDRLEDGSHLLIDYKTGNVEPKA 772 Query: 927 ETAQKLIDPQLSLEAAA-----LKAGSFSQIDCRKVANLFYIR--LKQKFKIDCITNDKK 979 ++ +PQL L A + F++I +V ++R Q F + Sbjct: 773 WEGERPEEPQLPLYAVHGGVEDVSGVVFAKIRAGEVQFAGHLRDAAAQLFANEEDCGKSL 832 Query: 980 KYSADELSEKSLKN-LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEY 1037 K ++ + + + + E+ GE EK+ L R+ E Sbjct: 833 KIPYEDAMQDAWERAIAELAEEFARGEA--AVKPTHGEKTCQYCPLPSLCRIHELSALD 889 >gi|229166074|ref|ZP_04293836.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621] gi|228617383|gb|EEK74446.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621] Length = 1166 Score = 164 bits (414), Expect = 9e-38, Method: Composition-based stats. Identities = 105/947 (11%), Positives = 238/947 (25%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 162 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + + ++ I+ E Sbjct: 220 LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYE---------RIKQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYHGE---------ASVTISTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + E L Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDARKEAMREEMDEFENYCLAYGVQGK 436 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + S + ++ + + DI I G Sbjct: 557 SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 617 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S ++ YA +A+ L L F D D G LFH + + Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 847 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 K ++ L+ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1014 >gi|257085627|ref|ZP_05579988.1| exonuclease RexB [Enterococcus faecalis Fly1] gi|256993657|gb|EEU80959.1| exonuclease RexB [Enterococcus faecalis Fly1] Length = 1196 Score = 164 bits (414), Expect = 9e-38, Method: Composition-based stats. Identities = 117/989 (11%), Positives = 261/989 (26%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQMENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLL---------------- 720 I Q + + L T S+++ S + + + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 721 -------------VLGGTDFFDNLKKRGQC-------YLDWTRKLDYTTKQPHYKRP--- 757 + ++R + +L+ + L P K+ Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQPIAPLAKQVFES 787 Query: 758 ------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 PL + S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|289422622|ref|ZP_06424464.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius 653-L] gi|289156973|gb|EFD05596.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius 653-L] Length = 1140 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 134/1008 (13%), Positives = 295/1008 (29%), Gaps = 102/1008 (10%) Query: 49 IYVP---TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 I VP T ++L + I + S + FT L +S Sbjct: 36 ILVPEKYTYEMEKKLSQRLLSQDDPNFRI--RVVSFSTLSNIVFTNVSGLKE---KKISR 90 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 R + + R + L L + L L D++ + + Sbjct: 91 SARTMLVYRALEKSEKDLKTFRPSLND-------------LGLVAKLLDLVIEFKQNDMD 137 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + +++L ++ D + + + + + S G L Sbjct: 138 VDYINSLSSKVDDRALASKLDDISRIYGAYEDLMQDKYMDSEDG--TVLFSRLIGSYEPL 195 Query: 226 TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI---- 281 I I TG P ++ + + D + + ++ I Sbjct: 196 DGASIFIDEFTGFTPVQYLVIEKLILLSKKIYISLMTDMRNINSYRGVFAKTNSTIMKIN 255 Query: 282 --------TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 +Y L FL+ + + + + +S Sbjct: 256 KFCIDNKVKRLEDIRVDDEEYYKKDELRFLESEIRFFNPKIYTGDTIKSSNDELSIEEFG 315 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSA 390 + ++ N++ E I + + +N E IA + + + Sbjct: 316 NNKLNIDNSNDDELSIDKF-----GIKISSFENRHREVEYIASVILDLVKNKGYRFGQIM 370 Query: 391 LITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + T D + + + IN + I + + S+L+ + ++ T Sbjct: 371 VATRDIDSYAHITKSIFDDYKINYFLDDKISAQSNPVLVFILSILDMKNTNYSYKSMFTY 430 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 +K + + L + RG K D DL V+ + + V Sbjct: 431 LKSGILDLDGDDIALLENYVLANGI--RGKKWFEDRWDLP--VVHSVEDNPVDIEVQDRI 486 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 +++ + E + L + + + +S ++ + L + Sbjct: 487 NKIKDLVMEPIIRLNEKLKG-----KNTLRDISSYLYEFTLDIGLDKKIVDLVETFERKE 541 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + +++E +I + G + +F Sbjct: 542 DNYRAREYSQAWNIFVDVLDEMVEFMGDEVIGIERYIKFLDLQFQGHELGIIPPSRDQVF 601 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--------NLKTAEKYI 681 I G + + LIL G NEGV+PK + ++ + +S+L + ++ Y Sbjct: 602 ITGVDRMKNPDTRVLILIGTNEGVFPKMVSDTSLITEMDKSNLLEKGVKFDSDIVSKMYD 661 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + M+ L T + ++ + L + + Q Y Sbjct: 662 EEFLVYRAMSTARERLYITYPKGDVEGNSMMASSLVNKIRKIFPQISEEDLS-DQVYDIG 720 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILKLDFIPH 798 + D K PK + +S S++++ + PY+ +AR L+ Sbjct: 721 FKLGDREIDFSQDKTPKISIDIADLIYGTPIFSVSKLEKFSSCPYSYFARYGLRARPRD- 779 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDII 855 + D G +H ++ +++ + + + + + L I Sbjct: 780 -VYEFSPMDAGNYYHKVLELFLRRIRSNDISWADVDLSYINREV-EVLGARILDARSSYI 837 Query: 856 ------WRHLFHKISHSFLEHEEK-----IQSSIEKIFVNIPAKMAIESIGIHL------ 898 +R++ +++ + ++ + + + + + E I L Sbjct: 838 LNTSEKYRYMVRRLNRTLVDSIDAIGKQVRGGKLRPKGLEVTFGIKSELEPIRLNIDGAR 897 Query: 899 ----TGFADRIDLLKSGF-----VDITDYK-TGDNPKKETAQKLIDPQLSLEA-AAL--K 945 G DR+D + I DYK + + E + + QL + A L K Sbjct: 898 EGLVNGKIDRVDSYIDQETNTEYISIVDYKLSSHDIDLEMVEAGLQLQLFMYMNAILYSK 957 Query: 946 AGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 F++ K A L Y R+K D A E E + Sbjct: 958 RSEFTRPGIKLKPAALLYSRVKSPQVKLSDIGDLDDLVASEAPEILRE 1005 >gi|27467581|ref|NP_764218.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis ATCC 12228] gi|57866487|ref|YP_188145.1| exonuclease RexB [Staphylococcus epidermidis RP62A] gi|81675093|sp|Q5HQJ5|ADDB_STAEQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|81842984|sp|Q8CPU0|ADDB_STAES RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|27315125|gb|AAO04260.1|AE016746_50 ATP-dependent nuclease subunit B [Staphylococcus epidermidis ATCC 12228] gi|57637145|gb|AAW53933.1| exonuclease RexB [Staphylococcus epidermidis RP62A] gi|329730534|gb|EGG66922.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis VCU144] Length = 1159 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 142/1043 (13%), Positives = 298/1043 (28%), Gaps = 151/1043 (14%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G + E + L ++ L A L ++ + + D L L S Sbjct: 59 GSLRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESD------LKLYGS 112 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-AADFLKIASKYWTERLV 200 A L++ LA+ I + E L+ L + + + K R+ Sbjct: 113 QAQYYGLSEKLAEQIQDFKKYNVTPEHLNQLIENHSIQTRTKHKLEDISLIYKQLESRMN 172 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++ Q + +K K + I G R++ + H VL Sbjct: 173 GEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLL 230 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D HP K + L + Sbjct: 231 TTDGSH------------------------HPFSLFRKPSEVL------SHLEDIANRLN 260 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEADNEREEAISIAIALR 379 + +F + D++N + + + K + V + E+ + REE +A + Sbjct: 261 INLNKTYFNTFYRYNNDDLKNLENGFDALQFTPKHHQNHVKIFESSSMREEINEVARRIL 320 Query: 380 ---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 D + A++ D + A + L + I +I ++ +L SLL Sbjct: 321 KDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIMEMLRSLLEV 380 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I A+ L K + F + LE L +D +D+ Sbjct: 381 IRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDEDIFSIDQF 438 Query: 497 ATQKNNTHVPHWQSRLS-EEDKELAVLLVDHILQCITPLV---TYKTNKNSTCGNLSISD 552 + +H + +E +L +++ +L + T K S +L + Sbjct: 439 SRMGRKSHQLTEGHQALYKEVIKLKKNVINKVLYFEQAMNEAHTVKDYATSFYESLEYFE 498 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 +T + L + ++ L + ++ + +++D+ Sbjct: 499 LPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQFLDVFDIG 557 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ++ + + I +++ N + + G+N+G+ P+ + + ++ + + Sbjct: 558 LEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLITDEEKKYV 617 Query: 673 NL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASRWLQR---- 718 T++ A +A + ++ SL N+ S +L + Sbjct: 618 EDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISPFLTQIKEL 677 Query: 719 --------LLVLGGTDFFDNLKKRGQ--------------------CYLDWTRKLDYTTK 750 L L ++ Q +LD + + Sbjct: 678 FYDLEITNLQDLHKAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDYRWLDAYLAIRDDDQ 737 Query: 751 QPHYKRPKPF----------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 L + S S + P+ YA L+L+ Sbjct: 738 LNQGLDYLTTSLTYDNETVQLNEILSQQLYGKTINASVSRFEGYQQCPFKHYASHGLRLN 797 Query: 795 FIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSHFEK----E 846 K + D G +FH+++ + N +T I L K+ ++ K Sbjct: 798 ER--TKYELQNFDLGDIFHSVLKYISDRIYGDFKNLDTKNIQSLTKEALELILPKVQFNL 855 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAK--------------MA 890 I + L+ + S + + Sbjct: 856 LNSSAYYKYLSKKIGSIVETTLKALKYQGEYSKFVPQRFETGFRKSPKNKGELVAQPLIT 915 Query: 891 IESIGIHLTGFADRIDLL--KSGFVD-ITDYK---TGDNPKKETAQKLIDPQLSLEAAAL 944 + I I++ G DRID I DYK + + Q+ + Sbjct: 916 NQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKVYYGLQMQMMTYMDIV 975 Query: 945 ----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + + I K L Y + + D+ + +KN ++ Sbjct: 976 LQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDQFQKDYIKNFK--MSG 1028 Query: 1001 LQNGEQPFISHLRLSEKSNIQSE 1023 L N +Q + L + + S+ Sbjct: 1029 LLNRDQEVLDALDIRLEPKYNSD 1051 >gi|315221763|ref|ZP_07863677.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211] gi|315189149|gb|EFU22850.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211] Length = 1092 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 120/939 (12%), Positives = 252/939 (26%), Gaps = 135/939 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E L + + L ++ ++ + DL L ++ AD +KI Sbjct: 99 MEEHDLQVYGGIRTDAQFIQQLVELYHELQEAQMTVADLDYLDEDE------KKADLIKI 152 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + S A A+ + ++I G T A L+ + Sbjct: 153 LQAVMHQLNQSEFTSESNIMAFANHIIAADVDKELQGLALVIDGFTRFSAEEAYLVELLH 212 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G ++ G + + + +S L L D +K E Sbjct: 213 R--KGVEIVIGA--YASEKAYRATFREGNLYQASVDF--------LRHLADKYKVKPEYR 260 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S+ +F D + ++ ++ S V + N++EE Sbjct: 261 P------------SIQPDDAFGKISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEE 308 Query: 371 AISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHS 427 +A ++R + + K ++ D R ++ I + ++ Sbjct: 309 LEYVAKSIRQRVHDGARYKDIRVLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLV 368 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + SL+ + LVK L EL D+ Sbjct: 369 QFIESLVRLKRYNFRTEDLLNLVKTGLYG----------RLTQEELDLFEQYIRFADVKG 418 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + D Q + H + L L + + Sbjct: 419 ISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHHFLTEIAFS 478 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + T EE K + + S K +++ Sbjct: 479 QNFASLVDFTN------------PQDQERQEEVWKAFCHVLEQFASVFSANKVKLDDFLT 526 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ + + + + L+ + GL + +PK LS Sbjct: 527 LVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIAQNKSLLSDE 586 Query: 668 MQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRWL 716 + LN T E + F T L+ + N I S +L Sbjct: 587 DRLRLNEATDEHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNISPYL 646 Query: 717 QRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 L + + + + L +L+ + + Sbjct: 647 LELHERPIELPIEVKRPQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVVV 706 Query: 769 T-----------------------------------------YSFSEIKQLINDPYAVYA 787 S S + + + YA + Sbjct: 707 RVLRKKLESEGISIPNVTSSLETETLSTQTLQVLYLPHQAFQLSTSALTEFYRNQYAYFL 766 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEK 845 + +L L PD G H + ++++++ +++ Q ++ FE Sbjct: 767 KYVLALQEEMTIH--PDARSHGNFLHRVFEKVMQEQSSESFDHRLEKAIQEASQEAEFEA 824 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIHL 898 + + + + + +E I + + + + + Sbjct: 825 LYTENAEALFAHEVLLDTARAT-GRVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQI 883 Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 G DRID L+ G + I DYK+ N + ++ QL ALK ++ D + Sbjct: 884 RGKVDRIDRLRSDGSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLMALKQEKWAN-DEVQ 942 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+++ + K S + ++++KNL Sbjct: 943 TFGAMYLQMAN-----PLVPLAKTKSQGDAVKEAMKNLE 976 >gi|51893312|ref|YP_076003.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium thermophilum IAM 14863] gi|81388507|sp|Q67MD4|ADDB_SYMTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|51857001|dbj|BAD41159.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium thermophilum IAM 14863] Length = 1165 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 108/939 (11%), Positives = 233/939 (24%), Gaps = 132/939 (14%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK----DLYPESPLSL 138 + L PP+S++ + + L L+ R+ L + + E Sbjct: 65 SFQRLAWRVSLKAGGLALPPLSDLGKQMVLRALLEKKRDDLRLFHQVADKPGFIERVAGS 124 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + ++L + +E E L L + Sbjct: 125 IRELRSYRQGPESLRRQLSQLEAEGLGETSLG------------AKLHDLALVMDELRSY 172 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + + ++ A E + + G G P ++ V + Sbjct: 173 IE--GRFTDPDEYLTVLAARLEESRLLEGAEVWVDGFNGFTPQELAVLGAVMRSARQVHI 230 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + + + ST+ Q L +L + + L Sbjct: 231 SLCIPPGQL----YKAGGHHSPSDLFHPVLSTYDQ--LMQLAAESGVAVDPPLYLNEPLR 284 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 F + P +AL+EA N REE + A + Sbjct: 285 ------------FRGAPELAHVERYLFRQSAPAWPGAPERIALVEAQNRREEVAAAAREI 332 Query: 379 RMSLDENK---KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLL 434 + E ++ A++ D + L GI I ++ +L + L Sbjct: 333 LRLVREEGLRFREIAVVARDLEGYGDLAATLFAEHGIPAFIDRRRTVAHHPLVELLRAAL 392 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + + + +K L E L + R + L+ L+ Sbjct: 393 EVVVQDWAYGPVFRYLKTDLTGVSRAEIDLLENYVIEHGIRGRAWQQQEPWQYLRRYTLE 452 Query: 495 RIA--TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 A + R+ + + + P T + L Sbjct: 453 EDAVPAGPAQQALLDEIHRIRRRATAPLLAFQRRLQRRGRPGPTVREITTYLFQLLDDLK 512 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + E+ + LF +I+E + ++ +++ Sbjct: 513 VARQLEAWKAEAEQRGDLETAR-EHEQVWTRVLELFDQIVEGLGDQVLSPKVYLQVLSAG 571 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 +DG + + + SR ++ G E +P A++ + + L Sbjct: 572 LDGLKLGLIPPGLDQVIVGTVERSRHAGVRATLILGATEKDFPPQPAEDAIFTDRERERL 631 Query: 673 -------NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLG 723 + E+ + + L + L + S + R+ L Sbjct: 632 KQSGLDVGPTSLERLFQEQFLTYVALTRGSDFLWISYPLADESGRAAAPSPVVGRMRRLF 691 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-----------PKPFPPLEAQPRTYSF 772 ++ + +P Q Sbjct: 692 PELKPRPAAPPAPDAEAAVAQVATPRQLAAAVARALRRARSGYAVEPHWLDLYQCIVLDP 751 Query: 773 SEIKQ----LINDPYAVYARRILKLDFIP------------------------------- 797 ++ L Y + RR Sbjct: 752 DLHREGAAVLAAVGYEEWLRRRGTPVGRELARLLYGDRLVTSVSRLEAFLSCPFRHFAGY 811 Query: 798 ------HFKKDPDRTDRGTLFHNIITELIKKRINKN-------TPEINHLMKQIIDSHFE 844 + + G +H ++ +++ E M IID Sbjct: 812 ALRLQGRAEFTVSAPEFGLFYHAALSLFVRELERDGLAWDTLTPDEAWRRMDSIIDRLAP 871 Query: 845 KE----NLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPA----------K 888 + L + + S L++ + + V +P + Sbjct: 872 RLQSEILLSSPQHRYLLRVIRRTLQSSLDYLSEHVLHGEFRPVAVEVPFGEEMDGLPPVE 931 Query: 889 MAIESIG-IHLTGFADRIDLLK--SGFV--DITDYKTGD 922 + + G + L G DR+D L+ G + DYK+G Sbjct: 932 VDLPGGGRVLLRGRIDRVDALEGRDGRWYVRVIDYKSGR 970 >gi|319401755|gb|EFV89963.1| ATP-dependent nuclease subunit B [Staphylococcus epidermidis FRI909] Length = 1156 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 136/990 (13%), Positives = 281/990 (28%), Gaps = 143/990 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIA 191 ES L L S A L++ LA+ I + E L L + + + + Sbjct: 104 ESDLKLYASQAQYYGLSEKLAEQIQDFKKYNVTPEHLDQLIDNHSMQTRTKHKLEDISLI 163 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K R+ ++ Q + +K K + I G R++ + Sbjct: 164 YKQLESRMNGEFITTEDSLQQFIEILSQSQWIK--KAEVFIDGFHNFSTLEYRIIEALVQ 221 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H VL D + ++ ++ +H + +L L+ + Sbjct: 222 HAKQVTVLLTTD----------GSHHPFSLFRKSSEVLSHLEDIANRLNINLNKTYFNTF 271 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + + F P + V + E+ + REE Sbjct: 272 YRYKNDDLKNLENGFDALQFTPKHHQ-------------------NHVKIFESSSMREEI 312 Query: 372 ISIAIALR---MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A + D + A++ D + A + L + I +I ++ Sbjct: 313 NEVARRILKDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNIDTKKSMTHHPIME 372 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 +L SLL I A+ L K + F + LE L +D Sbjct: 373 MLRSLLEVIRSNWHINAMLRLFKTNVLTSQFKRSSYL--IDLLENFVLERGIYGKRWLDE 430 Query: 489 KSLVLDRIATQKNNTHVP-HWQSRLSEEDKELAVLLVDHILQCITPLV---TYKTNKNST 544 +D+ + +H L ++ +L ++D +L + T K S Sbjct: 431 DIFSIDQFSRMGRKSHQLTEEHQALYKKVIKLKTNVIDKVLYFEQAMNEAHTVKDYATSF 490 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +L + +T + L + ++ L + ++ + + Sbjct: 491 YESLEYFELPSQLMTQRDELELAGLTEKAE-EIDQVWNGLIQILDDLVTVFDDQEMTLQQ 549 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++D+ ++ + + I +++ N + + G+N+G+ P+ + + + Sbjct: 550 FLDVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILPQTVSSSSLI 609 Query: 665 SRVMQSDLNL-------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI-PTIASR 714 + + + T++ A +A + ++ SL N+ S Sbjct: 610 TDEEKKYVEDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGNSGDEKEISP 669 Query: 715 WLQR------------LLVLGGTDFFDNLKKRGQCYLDWTRKLD-----YTTKQPHYKRP 757 +L + L L ++ Q + L Sbjct: 670 FLTQIKELFYDLEITNLQDLHEAQPLLMMQHSHQTKIQLFEYLRGWLDHEDIDIRWLDAY 729 Query: 758 KPFPPLEAQPRTY-------------------------------SFSEIKQLINDPYAVY 786 + + S S + P+ Y Sbjct: 730 LAIRDDDQLNQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEGYQQCPFKHY 789 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNII----TELIKKRINKNTPEINHLMKQIIDSH 842 A L+L+ K + D G +FH+++ + N +T I L K+ ++ Sbjct: 790 ASHGLRLNER--TKYELQNFDLGDIFHSVLKYISDRIYGNFKNLDTKNIQSLTKEALELI 847 Query: 843 FEK----ENLPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK-------- 888 K I + L+ + S + Sbjct: 848 LPKVQFNLLNSSAYYKYLSKKIGSIVETTLKALKYQGDYSKFVPQRFETGFRKSPKNKDE 907 Query: 889 ------MAIESIGIHLTGFADRIDLLKSGF---VDITDYK---TGDNPKKETAQKLIDPQ 936 + + I I++ G DRID G V+I DYK + + Q Sbjct: 908 LVAQPLITNQGIPINIRGQIDRIDTYTKGDYSYVNIIDYKSSESSATLDLTKVYYGLQMQ 967 Query: 937 LSLEAAAL----KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + + + + I K L Y + + DE + +K Sbjct: 968 MMTYMDIVLQNKERLGLTDI--VKPGGLLYFHV---HEPRIKFKSWADIDEDEFQKDYIK 1022 Query: 993 NLI--EIVTLLQNGEQPFISHLRLSEKSNI 1020 N ++ Q F L S+I Sbjct: 1023 NFKMSGLLNRDQEVLDAFDIRLEPKYNSDI 1052 >gi|307278852|ref|ZP_07559915.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0860] gi|306504523|gb|EFM73730.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0860] Length = 1196 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIINQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|313205879|ref|YP_004045056.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM 15868] gi|312445195|gb|ADQ81550.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM 15868] gi|315022191|gb|EFT35219.1| hypothetical protein RAYM_05300 [Riemerella anatipestifer RA-YM] Length = 888 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 75/447 (16%), Positives = 165/447 (36%), Gaps = 57/447 (12%) Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + ++ +++ E+V + E S L ++G LE+RLLNF+ +IL NEG P Sbjct: 459 FDVSIEDLEVLVNQMVSTESVDFQGEPLSGLQVMGLLETRLLNFENIILLSTNEGKLPLG 518 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTR-SLRENNIPTIASRW 715 ++N +L ++ + L T + G A+ F H+ +L SR+ Sbjct: 519 NSQNTYLPFDVRKNFGLNTFLENDGIYAYHFYRLLQDAHHIHLLYNALSSGVNTGEKSRF 578 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFPPLEAQPRTYSF 772 + ++ + + + K P+ L+ + Sbjct: 579 ITQIEMESPHQVQKIM----------VENESQPVEVLPMVVSKTPQVMERLKEWKHNIAA 628 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KN 827 S + + +P YA+ +LK+ +++ + G L H + L K ++ Sbjct: 629 SHLTTYLYNPIDFYAKVVLKIKETSEIEEELSLRNYGNLVHYALEFLYDKLKGKILTPQD 688 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQSSI---E 879 + + ++ + P + + K+ L+ + ++ SS E Sbjct: 689 LEWAITQIDESVEFAIKTLKHQPEFYERGMNFVHQQMAKKVIGDILKLDLELVSSGNTLE 748 Query: 880 KIFVN-----IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP------KKET 928 + + + K++ + + + GF DRID L +G + + DYKT + Sbjct: 749 ILDLEKEIKDVKFKVS-DELEVAFKGFIDRIDRL-NGNLRVIDYKTAKTKNLRLKISDKN 806 Query: 929 AQKLI-------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + L+ QL + A A+ G S+ + ++ + ++ + Sbjct: 807 RETLLKNKDYKQALQLCIYAYAM--GQLSEFLGKDISCGIW-------SFAEVSRGVQML 857 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPF 1008 D ++ ++ I+T + N + F Sbjct: 858 EIDGDLSDAMVSISSIITEILNPDIDF 884 Score = 61.5 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 20/240 (8%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L+ I +P KR + ++ + K S +LP ++ +++ + + +L Sbjct: 17 DLSRFNIVLPGKRPVVFIKDILKKQ-KKYSGLLPQFSTIEELIRDISGYQEIKGISLWLF 75 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 N+ R L A + +L + + + + +++ + E Sbjct: 76 AYNVYRQLFPAEDFGQFLK------------WFPTLLKDWDDILKFSDSDEAVLEYMFDE 123 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEA 219 E+ L E +F + + + + L ++ +++ Sbjct: 124 ERIKNWGETLGEEDNAR--QRNLNFWRKMTTFLPLLKKELKAKQWATSGMLHQEA-KSKI 180 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + + T + G P L+ + D + + Sbjct: 181 KLFAEQTSEQYVFCGFNAFTPVEELLVRQLLQWDKAQCFF-QADEYYIKDKRQEAGQFLR 239 >gi|283780045|ref|YP_003370800.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi DSM 6068] gi|283438498|gb|ADB16940.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi DSM 6068] Length = 967 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 104/634 (16%), Positives = 217/634 (34%), Gaps = 43/634 (6%) Query: 365 DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 D ++A ++A LR + + A+ D + +++ EL + GI +G + Sbjct: 269 DGPADQAAAVADWLRALGGKYHSDEIAIGVPDEAIVSQLERELEQSGIKSRAFSGTTVGQ 328 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 TL S +L +++ + + +A+LV+HP K + ++ V + Y Sbjct: 329 TLPSLLLDAIVAYVL-RERYDELASLVRHPDLHDWIERKSAADGALDVDPV---AALDEY 384 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + + + ++ +T +P S S + + + + + Sbjct: 385 YGEHYSARLDEELLAREASTTIPEGLSPSSAAHRRRTRSVARSVKTTVDLVHRLIAPLR- 443 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL-SSLFSKIIETGSCIKANA 602 ++ W + L V + + K + Sbjct: 444 -TSKQPLARWGEALRAILLEVYHGRQLDRRIPRDRMLLEATSMLAGALDAPAKVPAKLSP 502 Query: 603 IEWIDIITRLIDGETVK---PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + L+ ++ P ++ + +LG LE L + I+ NEG P Sbjct: 503 AVSLSAAIDLLVSPVLRSNIPPPAEAGAIELLGWLELPLDDARAAIITTFNEGYIPAGEG 562 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE-NNIPTIASRWLQ 717 FLS +++ L ++ A++ + + A M ++ L+ + R+ P SR L Sbjct: 563 SAMFLSSELRTTLGIQDAKRRVARDAFALFMLAESKAELLLVVAHRDVEKNPLAPSRLLF 622 Query: 718 RLLVLGGT----DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L F L + +L + P P+E +S S Sbjct: 623 ATEPLEAARRGVQLFSALPATPTRRIALAPQLTRLSSGFQIPLPDTSLPIEDN---FSVS 679 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN------ 827 + K + PY Y R +L+L + + + G+L H+++ + ++ Sbjct: 680 QFKAYLACPYRFYLRHVLRLSSMNDAADELEPRGFGSLIHDVLQSFGRSDEVRDSTHSTD 739 Query: 828 -TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVN- 884 + ++ I+ + + + + +F + + + ++ Sbjct: 740 IFDFLAASLQGIVSARLGERACRAAVR-VQVEQIRSRLQAFAKWQAARTATGWRIVYTED 798 Query: 885 ----IPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQ-------KL 932 + M I+ + L G DRID + + DYKT D P A + Sbjct: 799 LDKQLTGTMTIDDKPVILRGRIDRIDRHDDTQTLAVLDYKTADTPNAPKAAHRKPQSGEW 858 Query: 933 IDPQLSLEAAALKAGSFSQID-CRKVANLFYIRL 965 +D QL L L A + D + L YI+L Sbjct: 859 VDLQLPLYRHLLPAAAKESADTSHRQLQLGYIQL 892 >gi|255976208|ref|ZP_05426794.1| exonuclease RexB [Enterococcus faecalis T2] gi|255969080|gb|EET99702.1| exonuclease RexB [Enterococcus faecalis T2] Length = 1186 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 81 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 141 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 196 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 253 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 254 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 298 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 299 PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 359 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 418 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 419 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 478 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 479 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 539 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 598 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 658 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 718 DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 777 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 778 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 836 AATGEFFHEALDQFFKLLIINQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 896 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 954 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042 >gi|300778444|ref|ZP_07088302.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300503954|gb|EFK35094.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 895 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 130/999 (13%), Positives = 287/999 (28%), Gaps = 160/999 (16%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L++ I +P KR I +R E S LP ++ ++V L+ L Sbjct: 17 DLSAFNIILPGKRPIVFIRQILEE--NHYSGFLPNFFTIEELVNNIAGQQLIQGIPL--- 71 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L + D D P + + + + ++ + E Sbjct: 72 ------WLFSFDVYRSLNLIPRDDFSDFLKWFPTLQ-KDWDDILKFSDSDQAVLQYMFDE 124 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 E+ E L + FL +W +N P + + A Sbjct: 125 ERIKEWAQDLGEDDEVPR----KKFLN----FWQN----MNVFLPALKERLQEKNWATSG 172 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 M +A Sbjct: 173 MIHEAAKAKVADF-----------------------------------------AKNTRE 191 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 KL+ L + K T + Sbjct: 192 EFVFCGFNAFTPVEEKLVRSLLQWNKAQCFFQADRYYFNDERQEAGKFLRNHKTWKEFDD 251 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 + I + + + E + + + ++ +A++ D NL Sbjct: 252 NRAFQWIEDDFNQPKKIKVYEVSGNVTQTKVLPEIFKEINNKTYSNTAVVLLDENLLPAS 311 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + N++I+ G PL S ++ Sbjct: 312 LDVMH-GVDNLNITMGFPLKNL---SFSNAIKRLF------------------------- 342 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + + + + K+ ++ ++ V Sbjct: 343 -----------YLQKQLEKNKSSYYYRDVFPILEELPKSVEDEQIINDFKAKVEERNIVY 391 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + +L + ++Y G + D ++ + +D+ + FE + Sbjct: 392 ISHKLLHELLSGLSYFGLLQKAPGTNAYLDMLIAFCQQVKWLEIDDIQYENVSHFENAFR 451 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + T I+ +I + I+ E++ + E L I+G LE+RLLNF+ Sbjct: 452 IIKNQL-----TPYNIEIKMETLEILINQHINSESIDFQGEPLRGLQIMGLLETRLLNFE 506 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTR 701 +IL +NEG P ++N ++ ++ +L T + A+ F +++ Sbjct: 507 NVILLSVNEGKLPLGNSQNTYIPFDIRRFFDLHTFLENDSIYAYHFYRLIQDAKNVHLLY 566 Query: 702 -SLRENNIPTIASRWLQRLLVLGGTDFFDNLKK-RGQCYLDWTRKLDYTTKQPHYKRPKP 759 +L SR++ ++ + + + + + ++ T Sbjct: 567 NALSSGVNTGEKSRFITQIEMESSHEIEHLIIENSSEPIATQAIEISKTQIVQE------ 620 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 LE + S S + + +P Y +IL +++ + G L H + E+ Sbjct: 621 --RLEKWKQKVSASHLTSYLYNPIDFYLSKILNTSETDEIEEELSVKNYGNLVHYSLQEV 678 Query: 820 IKKRINK-----NTPEINHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLE 869 + K + + + I+ EK P I + + K+ + L Sbjct: 679 YEMLKGKVLKESDLKNSVKAIDEYINIAIEKLKHQPEFYEKGMNYIHKAIAKKVIENVLN 738 Query: 870 HEEK---IQSSIEKIFVNIPAK-MAIESIG---IHLTGFADRIDLLKSGFVDITDYKTGD 922 H+ + + +E + + + + G I GF DRID L +G + I DYKT Sbjct: 739 HDLELIKQGNKLEIVDIERRFENIDFPLEGNDKISFFGFIDRIDKL-NGTLRIIDYKTAK 797 Query: 923 NP------KKETAQKLI-------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 ++ + QL + ++ + + + + Sbjct: 798 IKNLNVKIDEDNVAEYFHNSDRKQALQLCIYHYVVQH--LPEFWGYPIETGIWSFADARK 855 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 + + DK + +++ + ++ + N + F Sbjct: 856 GMVSLQFDKGN------IDDAMRAVKSLILEILNPDINF 888 >gi|310826444|ref|YP_003958801.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612] gi|308738178|gb|ADO35838.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612] Length = 1123 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 116/899 (12%), Positives = 245/899 (27%), Gaps = 140/899 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLKIASKY 194 LS+ A + +N+ I ++ E EDL ++E ++ Sbjct: 108 LSVYRRSAGKLGFLENICAFISELKQSEITPEDLETAESEVGEGRILSQKLKDIRKIYGA 167 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 +T+ L + L+ A+ + I I G R++ +A + Sbjct: 168 YTKLLGGERID--GDDRAKLLCAQIPKSDYLERSLIWIDGFHTFSNQDFRIIEALAAKAD 225 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + LD + + K+ + L + E Sbjct: 226 CVTITLTLDPD------------KNAPDAPAFYVPGETLKRIEKMANDLGFEAEI----- 268 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + + D ++ + ++ D+A+++ N E Sbjct: 269 ---------VNLEAAVRPAVSGLDYLEQNLFALRPRPYKEEPGDMAVVQCKNIWNEVEKG 319 Query: 375 AIALRMSLDEN---KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSIL 430 A + + E + ++ D + +GI + ++ + Sbjct: 320 AQKIVELVRERDFRYQDIVVLAGDMETYGGAIKRAFSEYGIPFFMDDVKKVTENNFLEAV 379 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + L + I T VK A E + +RGN + Sbjct: 380 LAALETNRSHYAYEDIFTFVKTGFAPITPEEAQELENY--VIEYGIRGNAWEKPFDRPSA 437 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + + + + D + L K + + ++ Sbjct: 438 NEAVSLEALNASRERLMAPFMTLRKILRKSRTYADKTRSLVRFLEDIKAPETIDGLSEAL 497 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + + + L +F +I T E+I +++ Sbjct: 498 RER---------------GDFDSMGLYNQIWNILMEVFDQINSTMGGESTTLEEYISVLS 542 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 TV + + I + SR L++ G+NEGV P N+ LS +S Sbjct: 543 GGFQSYTVGVIPNRQDVVNITDLMRSRHSEMKALLVFGMNEGVIPANSPSFNLLSERERS 602 Query: 671 DLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIA-SRWLQR--- 718 L ++ Q L + S+ + TI S + R Sbjct: 603 QLRKQEMALQDNSDFRRAQEDFLLYSLFAAPSDYLYLSYSMADAEGSTIPVSPLIPRIQA 662 Query: 719 ----------LLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 L ++ RG +D R+L Y + K + Sbjct: 663 VFPKLTVTSALENTLSKEWEAVATPRGTISSLIDHLRELRYGKGTVMPEETKRLWQAVGK 722 Query: 767 PR---------------------------------------TYSFSEIKQLINDPYAVYA 787 S S ++ P++ Y Sbjct: 723 WYDEDARYHTAFRQIQEALDYDGVDDCLSQGQAIRLFEPPIQASVSRLELYRKCPFSHYV 782 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIID 840 L +P + + + D GT+ H++I + K+ + + + + ++ I+D Sbjct: 783 AY--GLRPVPRQEYEVEPPDIGTVLHHLIDAVYKEAEREQVSVKDLSQEKTDAMVDAILD 840 Query: 841 S--------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK--MA 890 F ++ R + + ++H + + + + Sbjct: 841 ETLPQVRHQVFNSTGQYQYLGRKLRRVSKRTVRVLVDH--MRRGEFDFKYSEQQFSQILE 898 Query: 891 IE--SIGIHLTGFADRID---LLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 + + + G DRID FV + DYK+G + QL++ A Sbjct: 899 LPSFEETVRVRGVIDRIDVYQREGDTFVKVIDYKSGNKTLNLAEIYYGLSLQLAVYMEA 957 >gi|315174631|gb|EFU18648.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX1346] Length = 1196 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 111/955 (11%), Positives = 248/955 (25%), Gaps = 147/955 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYWTERLVEL 202 + L + + + +L+ ++ L L + + ++ + Sbjct: 125 GFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQY 184 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLP 260 S +++ +E+L + +I+G +L+ + V Sbjct: 185 GYES-----AEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVAL 239 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 LD P + + + + H Y LA+ K++ +S+ + Sbjct: 240 VLDKQYPHDLPDPRSLFYEAGQTY------HQLYQLAR-----------QKQIPILSDYV 282 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + ++I+ L + + + L A+N +EE +A +R Sbjct: 283 EKKEVLITNPDLQGLNDYWIQSQEHLPPLSTTDWRGDGLFLWRAENVKEELTHVATEIRR 342 Query: 381 SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + E K+ ++T D + ++ I + + + + + SL Sbjct: 343 LVVEEGYRYKEIQVLTRDLDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAI 402 Query: 437 IFKLNDFMAIATLVKHPLAK--------------FGFPEKYLSRAKNALELVALRGNKNS 482 + + ++ L + R + E V L Sbjct: 403 HSYNYRYRDVLRFLRTELFMPMNQHATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEG 462 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 Y K R + S ++ L+ Q + T Sbjct: 463 YYWSQEKDWEFIRYDFEAEEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKTGLEAAT 522 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 L S + E+ L SL + + + Sbjct: 523 VFYHFLLQSGVATQLKMWRLQAIEAGQLETAR-NHEQTWDALMSLLDEYVTVYGESSFDF 581 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I ++G + + +R G+ E ++P+ Sbjct: 582 TTFQEIFVSGLEGLHYSKVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKT 641 Query: 663 FLSRVMQSDLNLKTAE---------KYIGQAAH--DFEMANGTRHLIYTR-SLRENNIPT 710 LS + +N E + I Q + ++ L T S+++ Sbjct: 642 LLSDEERQTINDTLTENQYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEV 701 Query: 711 IASRWLQRLLVLGGTDFFDNLK-----------KRGQCYLDWTRKLDYTTKQPHYKRPKP 759 S + + + F+ + Y +L +Q + Sbjct: 702 KPSPYFKNIQKDLNLPVFEKNETTIFDDETTSLAHISTYRTLIGELTRLKRQRKETQEGL 761 Query: 760 FPPLEAQPRTY----------------------------------------SFSEIKQLI 779 P + S S ++ Sbjct: 762 LPFWLNMEKALMNQSIAPLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFY 821 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLMKQ 837 Y ++R L+L F G FH + + K +N E+ Sbjct: 822 RCQYQYFSRYGLRLKERDVF--GLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVN 879 Query: 838 IIDSHFEKENLPPH-------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ L I K+ S+ + +S + + Sbjct: 880 LLAEEVLNSILGDARFSVLTTSSRMNYIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTE 937 Query: 885 IPA------------KMAIESIG-IHLTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKE 927 + ++ +++ G IH+ G DRID L + DYK+ Sbjct: 938 VLFGQIAAKKGISGLELPLKNQGKIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMT 997 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKY 981 A + Q+ + + K A Y+ + +D ++ Sbjct: 998 EAYYGLAMQMLTYLDVALMDAVQLVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|227832526|ref|YP_002834233.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|262183606|ref|ZP_06043027.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453542|gb|ACP32295.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 1004 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 117/1065 (10%), Positives = 274/1065 (25%), Gaps = 184/1065 (17%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + + + P+K + LR E E + +++S+ + Sbjct: 18 DASGILVVAPSKESGSLLRRELAENLDDYAAQTSMVRSVHSLAFALLRQSSEEEL----- 72 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 RL+ A + R L D P + + A+ L D++ Sbjct: 73 -----RLITGAEQDAVIRELLQGHAADRRGVWPEEM-RPALEYVGFARQLRDLLLRAIER 126 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 DL L W+ A DFL+ + + + + S ++ + E + Sbjct: 127 GLGPTDLEELGQRYGRPMWVAAGDFLREYER---TQALAGSHSYSAAELVSQVLLRPELV 183 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I++ + P + +L++ +A ++ G D + Sbjct: 184 REHPWHTIVVDDAQLLDPTSGQLIAELAKTARLTVI--GGDPDQAVFAFRGA-------- 233 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + + L E R + P S + + Sbjct: 234 --------------------------NSEFLTTWKAENELRLSSTHRRPSPACVSVVDSR 267 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 L + + A ++ + + + ++ + ++ Sbjct: 268 GTLRDVL---------------------ANTVRRRHLEDGVDWRDIAVIVRSTGDIGPAR 306 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + L+ + L+ + L A+ + + + L+ P+ Sbjct: 307 RTLLSAGVPVHINPTDVVLAEQRLVKAVLLALRALENELEPVELEDLITGPVGGADPVTL 366 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 RG + + +P + + L+E ++ + Sbjct: 367 RRLIRGLRRWKPEQRG---------------MNTLRELLDGELPDFNNLLTEREEAILAR 411 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + T L + + + +L Sbjct: 412 IRGVLSAGRTALQEGAAVEEVLWEVWQATGLDTRLQAAALRGGAAGSQADRDLDAMMALF 471 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + +++ S + I + + + + + IL + +D Sbjct: 472 DAAGDYAERRPAASLESF----ILYITEQELPTGVRDRRSALPNAVEILTAHGAVGREWD 527 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------KYIGQAAHDFEMAN 692 T+I+ G+ EG WP + DL + + + Sbjct: 528 TVIVAGVQEGTWPSVGETGSLFGQEDLIDLLDRGITPGTPVSHVSGRLAEERRLFHVATT 587 Query: 693 GTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTDF--FDNLKKRGQCYLDWTRK---- 744 RH + ++ SR++ L G D ++ G+ Sbjct: 588 RHRHRLLIVAVDSPEGDVVEEPSRFIDEFLSARGVDVPGAQARREAGKRLARQAWPRELG 647 Query: 745 ----------------------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 L +R P R+ + ++ Sbjct: 648 LEVPEPSPVTLHSGASADEDIDPLDVSVLSVPAFVAQLRRCATDPEAGEAERSQAVRQLA 707 Query: 777 QLI------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 +L P +A R + + + L + ++ + + ++ Sbjct: 708 RLAEAGVPGAHPDQWWAARDVASELPLRGSDTVSPSRVDALLSCPLNAVLGQLVEDDSAN 767 Query: 831 INHLMKQIIDSHFEKEN---------------------LPPHIDIIWRHLFHKISHSFLE 869 IN L + + E P F ++ Sbjct: 768 INLLRGNLAHAFLEALGRGASTEPAKRLVLDAFDSLLEGPAWHREASLADFERLIDRTHS 827 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKET 928 +S+E + V +P + I + + GF DR+ + D KTG P ++ Sbjct: 828 WVLSSSTSLEPVGVEVPVTVDI-GPDVTIRGFIDRLAKAGE-DYVVVDLKTGTKVPSADS 885 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID--------------CI 974 AQ + QL AL G + ++ + + Sbjct: 886 AQN--NTQLMTYQLALAHGELVTAPVEPGGESQAVSIRTGDGLPRGGGVLVYPRSTTASV 943 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + ++ E E+ + L +V L+ + + Sbjct: 944 STREQATKPPEELEEFAQALPSLVAELRGPDL--TARENADCDRC 986 >gi|291548282|emb|CBL21390.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. SR1/5] Length = 809 Score = 163 bits (412), Expect = 2e-37, Method: Composition-based stats. Identities = 85/715 (11%), Positives = 197/715 (27%), Gaps = 104/715 (14%) Query: 361 LIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDIS 416 + A N ++E A + + E + A+IT + + T GI I Sbjct: 1 MFSAVNPQKEMEEAARRIARLVREKGCRYGEIAVITGNLEEYGNLAKQVFTAAGIPYFID 60 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + + L + + ++ ++ ++ E L E L Sbjct: 61 EKHTVLMNPFVEYFRAALEMAVQDFSYESVFRYLRCGMSCVTREEADLL------ENYVL 114 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + D + + R ++ + + R ++E +ELA+ Sbjct: 115 ALGIRGFKKWDEVWVRIYRGMPPESIQRLNEIRQRFADETRELALSFKGGKKTVREYCTF 174 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + + + K + + + L ++E Sbjct: 175 LYEFAVRSQVQQKLKHQELKFKE--------QGDKAMEKEYAQIYGIVMELLDNMVEILG 226 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 N ++ ++ ++ V + + +RL + L G+NEG PK Sbjct: 227 EETVNRQDFRQLLETGLNQAKVALIPPSMDQVLVGDMERTRLKDIRALFFVGVNEGNIPK 286 Query: 657 NTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNI 708 NT+ L+ + + ++ + + L + ++ Sbjct: 287 NTSGGGMLTEIDREFFKDQGIQLAPGPKELMNMQRFYLYLNMTKPRELLCLSFCQSDSQG 346 Query: 709 PTIASRWL-------------QRLLVLGGTDFFDNLKKRGQCY----LDWTRKLDYTTKQ 751 ++ +L ++ + L Y L D Q Sbjct: 347 KALSPAFLVSNIREMFPEMEIRQCGDMQEPMELLELPGISLDYFLRGLAGEAYQDNAVFQ 406 Query: 752 PHYKRPKPFPPL----------------------------EAQPRTYSFSEIKQLINDPY 783 Y P + YS + +++ + Sbjct: 407 ELYSWYLQSPEYRILVKKLTEASFSERPSDKIGKTVAKILYGEISPYSATRLERFAACAF 466 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIID 840 A + + LK+ + + D G + H + + + + +IID Sbjct: 467 AHFLQYGLKVTER--AEYEFRAMDMGNVMHMALEKFAAEVRKEGLDWAELTEEERNRIID 524 Query: 841 SHFEKENLP--------PHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMA 890 S ++ + + +I + E+ + + + Sbjct: 525 SCLDQVSADYGNTILKSSARNEYMIERTRRILRRTVWALQEQLKHGAFRPEGFEVRFQG- 583 Query: 891 IESIGIHLTGFADRIDLLKS---GFVD--ITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944 G DR+D+++ V + DYKTG+ + QL + Sbjct: 584 ---------GRIDRVDIMEEPENNRVYVKVIDYKTGNTSFDLLALYHGLQLQLMVYLDGA 634 Query: 945 KAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + R+ A +FY +K + I D + + L + + L++ Sbjct: 635 LQVEKRKYPDREIVPAGVFYYNVKDPMIQEKIHADMESINEQMLKKMKMNGLVQA 689 >gi|332308914|ref|YP_004436764.1| putative DNA repair protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176243|gb|AEE25496.1| putative DNA repair protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 856 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 100/684 (14%), Positives = 186/684 (27%), Gaps = 94/684 (13%) Query: 384 ENKKKSALITADRNLAR-RVKLELTRF-------------GINIDISAGIPLSTTLHSSI 429 E A++ D R + L ++SAG P+S+ + Sbjct: 227 EPSSTIAIVVPDLVAKRELLINALDEAFEPQVILPNTPDYVQPYNVSAGTPMSSQPIIML 286 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 +L D + ++V P E Sbjct: 287 AKKILTLGAASTDVATLRSIVMSPFIGNSESESGKRAL---------------------- 324 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 Q +E V L + + + + N + Sbjct: 325 --------------FDLTLQEVPTELSLSQMVSLERCPPKLMASVKQFLKIMNDAPERDT 370 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIEWID 607 + +W K + L + R + ++ L T + + AI + Sbjct: 371 VGNWLKRFESALFAIGWPGERLPNSKEYQALKQHNELLHRLCSHYNTDTVTRDTAIYYYH 430 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + T+ K + +LG LE+ L FD + + +N+ VWP PFL + Sbjct: 431 LAL----SNTLYAAESKDCPIQVLGVLEAAGLTFDYIYILDMNDTVWPAKATPTPFLPEL 486 Query: 668 MQSDLNLKTAEKYIGQAA---HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +Q + + ++ D LIY+ E S + + G Sbjct: 487 LQIEHGMPHSDASRELEFAKVLDNRFKRSCNSLIYSYCNTEKERKLTPSIFAVGEHLSGN 546 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + L Y K+ P T S ++ P++ Sbjct: 547 VFKVNELNHIDLLYKQIPVKVLQDDMVPLETEVA----------TGGVSLLEDEARCPFS 596 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------PEINHLMKQI 838 + + LK+ +P + RG + H ++ + E + Q Sbjct: 597 AFVKHRLKVAEMPVVRMGFSPQQRGIILHEVLEYFWEDMKTHEALVQLTQEERAQKVLQS 656 Query: 839 IDSHF----EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 I+ F KE++ + + L K+ +L+ E + + + + I + Sbjct: 657 IERAFSAFTTKEDISSTLIEMEVQLLSKVIDKWLDIEVQR-PAFIVEELEQKKIVTIGPL 715 Query: 895 GIHLTGFADRIDLLKSGFVDI-TDYKTGDNPKKE-TAQKLI-DPQLSLEAAALKAGSFSQ 951 I + DR D L + YK+G + + D QL + A + Sbjct: 716 TIRI--RIDRKDRLIDNDRVVFIGYKSGSAIANKLDHAAGLTDVQLPISALTAENVDTVA 773 Query: 952 IDCRKVANLFYIRLKQK-----FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 K Y L + S E E+ L + G Sbjct: 774 YASLKTGEELYSGLADPTSSNVSRDKHTLIKAASVSMSEQIEQWKVRLETLAEQYAEGVV 833 Query: 1007 PFISHLRLSEKSNIQSEYDHLARV 1030 L S S R+ Sbjct: 834 ----TLTPSVASCQFCPVKLTCRI 853 >gi|312867329|ref|ZP_07727538.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis F0405] gi|311097030|gb|EFQ55265.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis F0405] Length = 1088 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 121/982 (12%), Positives = 288/982 (29%), Gaps = 147/982 (14%) Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ E L I L E L + + + L + ++T + Sbjct: 72 LNQVFEEQPLDDIGLGMLFFKALSQMKEQDLKVYGALRKDPQFIQQLVQLYHELQTAQMD 131 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + DL L+ + L + +E LV+ S L + E HL + Sbjct: 132 FTDLELLEEAEKRED-------LLAIFEAVSEMLVKHRYESQSKMAFFLNQVEEGHLEEQ 184 Query: 226 TKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + I++ G T L+S + G ++ G+ + + + +S Sbjct: 185 LQDVAIVVDGFTRFSAEEEALISLLHR--KGVEIVIGV--YASEKAYRASFREGNLYQAS 240 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 L +L +++ + + S R + Sbjct: 241 VDF--------LLQLAKTFEVQPQYCGQALEDSFSRITR-----------MLEARYDFSQ 281 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402 +E+++ + + V L + + ++EE +A ++R L + + ++ D + Sbjct: 282 VEDELGDQDRTA--VQLWQTNTQKEELEFVAKSIRQRLHDGARYRDIRVLLGDVEAYQLQ 339 Query: 403 K-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ I + + ++ SL + L+K L Sbjct: 340 LKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGL------- 392 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + ++ + + H P +R + + E Sbjct: 393 ---------------YSDLTQEEVDAFEQYLRFAEIKGATKFHKPFTSNRQGKFNLEKLN 437 Query: 522 LLVDHILQCITPLVTYKTN-----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + +++ + P + + + L ++ ++++ L+E Sbjct: 438 TLRERVVEPLAPFFSQRKQKVTHLLTAFTEFLQEVQLSQNLQALIKDLALEEQE-----R 492 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 +++ K + ++ + +++ ++ + + + + Sbjct: 493 YDQVWKAFLHVLEELNVVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLI 552 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---------AHD 687 L + GL + +PK LS + LN T E Q Sbjct: 553 EPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVSSENLKKNRFV 612 Query: 688 FEMANGTR--HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------QC 737 L+ + N + S +L L + + + + Sbjct: 613 AVSLLNAATNQLVLSAPSLVNEMEDSVSPYLVELTKEPIAIEWTIKQAQASSDDIGTYRA 672 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPP----------------------------------- 762 L +L + Sbjct: 673 LLARVIELHQEEIASELSAEEASFWSVAVRVLRKKLAAEGIQIPQISTELKSRQLQSDTL 732 Query: 763 ----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 E + T S S + + YA Y R +L L + PD G H I Sbjct: 733 QALYPEGKALTLSASALNEYYKHQYAFYLRYVLGLQEDETIR--PDARSHGNFLHRIFER 790 Query: 819 LIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 ++K ++ + + + ++ F++ R L + + + Q+ Sbjct: 791 VLKDSSDQAFDQRLNEAIRETSQEAEFQQLYTESGETEFIRSLLLDTAKTTGRVLAQ-QN 849 Query: 877 SIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNP-KKE 927 IE I + + + L G DRID L+ G + + DYK+ + Sbjct: 850 GIETIGEETLFGGSAHTSYPLSDGRLLQLRGKVDRIDQLRDRGALGVVDYKSSLTQFHYD 909 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ++ QL +A++ Q + + + Y+ + D + + KK + ++ Sbjct: 910 KFFNGLNSQLPTYLSAIQDLKEYQ-EEQGIFGAMYLEMG-----DPVVDLKKTKTVEDAI 963 Query: 988 EKSLKNLIEIVTLLQNGEQPFI 1009 +++K+ + L + P++ Sbjct: 964 NQTMKS-QQYKGLFMADQAPYL 984 >gi|227518366|ref|ZP_03948415.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis TX0104] gi|227074044|gb|EEI12007.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis TX0104] Length = 1123 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 18 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 77 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 78 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 132 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 133 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 190 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 191 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 235 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 236 PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 295 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 296 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 355 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 356 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 415 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 416 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 475 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 476 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 534 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 535 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 594 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 595 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 654 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 655 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 714 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 715 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 772 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 773 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 832 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 833 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 890 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 891 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 950 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 951 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 979 >gi|229132030|ref|ZP_04260893.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196] gi|228651430|gb|EEL07402.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196] Length = 1166 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 105/947 (11%), Positives = 237/947 (25%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 102 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 161 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 162 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 219 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 220 LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 270 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 271 KTIPLMEQ-----PRFHSPALAHLETHYEARPNEKYHGE---------ASVTISTAANLR 316 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 317 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 376 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + E L Sbjct: 377 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 436 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 437 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 496 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 497 MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 556 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + S + ++ + + DI I G Sbjct: 557 SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 616 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 617 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 676 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 677 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 729 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 730 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 789 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S ++ YA +A+ L L F D D G LFH + + Sbjct: 790 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 847 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 K ++ L+ + I +++ L + +I S + E S Sbjct: 848 ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 907 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 908 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 967 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 968 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1014 >gi|78776289|ref|YP_392604.1| hypothetical protein Suden_0088 [Sulfurimonas denitrificans DSM 1251] gi|78496829|gb|ABB43369.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 781 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 146/384 (38%), Gaps = 29/384 (7%) Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + I++ + + T+ + + ++G LE+R + F+ +I+ ++ PK + Sbjct: 384 EMSVKSVINLFMQRLSKRTL--DDVRGGKITVMGVLETRSVTFEAIIIVDFDDSNVPKKS 441 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQ 717 K+ FL+ ++ NL T H +EM G++ + + + SR+L+ Sbjct: 442 DKDMFLNTQVREMANLPTMSDRENLQKHYYEMLINGSKEVAISFVKS---KESAGSRFLK 498 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 +L + + ++ L + + + +T S +++K Sbjct: 499 QLNIKENNQHNEQ---------EYASLLFSRAGVNKQQEREISFDYSFRGKTLSATKLKT 549 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + Y R I++L K P + G+ H + EL K++ E +++ Sbjct: 550 FLTCKRKYYYRYIMQLKNHEIPKDMPKEHEIGSDVHKALKELYT---KKSSYESLEELRK 606 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 + + ++ + + F+++E K + + + +++E G+ Sbjct: 607 DLHKEMSCASGESELEGYLMAVQERRMSVFVQNEIKRFAEGYVV-LECEKSLSVEFGGMV 665 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 L G DRID+ K + + DYKTG P ++ + D QL Sbjct: 666 LNGQIDRIDI-KENELYVLDYKTGSYPIYTQKNFTEATDFQLEFYYLLAS-------TLG 717 Query: 956 KVANLFYIRLKQKFKIDCITNDKK 979 +V Y LK+ + +K Sbjct: 718 QVKECGYYDLKESKIVTEPLLSEK 741 >gi|323351322|ref|ZP_08086978.1| exonuclease RexB [Streptococcus sanguinis VMC66] gi|322122546|gb|EFX94257.1| exonuclease RexB [Streptococcus sanguinis VMC66] Length = 1093 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 119/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + K L+ D + ++ I + ++ + SL Sbjct: 322 VHYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPH 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 D G H I ++++ + + + ++ FE R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYGESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + S IE I + + + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLGNGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|229010529|ref|ZP_04167731.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048] gi|228750727|gb|EEM00551.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048] Length = 1171 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 105/947 (11%), Positives = 237/947 (25%), Gaps = 151/947 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL---KNEKYGMWWLLAAD----FL 188 LS+ A ++L +I + +++ + + L Sbjct: 107 LSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDL 166 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 ++ + L+ Y L+ ++ I I G P ++ Sbjct: 167 QLLYDDFERALIGKYL-DSEDYLQLLIEKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRG 224 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + +D N + + ++ I+ E Sbjct: 225 LMRLGTRVTITLTIDEKTLAQPVNELDLFYETTLTYEKI---------KQVAREEKIEIE 275 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 L R + + L N + V + A N R Sbjct: 276 KTIPLMEQ-----PRFHSPALAHLETYYEARPNEKYHGE---------ASVTISTAANLR 321 Query: 369 EEAISIAIALRMSL---DENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 E +A +R + D + A++ + + ++ T + I I P+S Sbjct: 322 AEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHH 381 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL-SRAKNALELVALRGNKNSY 483 + S L I + A+ VK L K + E L Sbjct: 382 PLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGK 441 Query: 484 DIMDLKSLVLDRIA---------------------TQKNNTHVPHWQSRLSEEDKELAVL 522 + R ++ P + + + + Sbjct: 442 RWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQ 501 Query: 523 LVDHILQCITPL------VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + + + L + L +D ++ + + Sbjct: 502 MCEAVYLFLEELDVPKKLEELRVRAEENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKM 561 Query: 577 FEEEGKTLSSLFSKIIETGSCIK---------ANAIEWIDIITRLIDGETVKPKIEK--- 624 + S + ++ + + DI I G Sbjct: 562 SLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFIIGVNEGVIPAAPMD 621 Query: 625 -------------SSTLFILGTLESRLLNFDTLI---LGGLNEGVWPKNTAKN----PFL 664 ++ + + T LL ++ + +E ++ + L Sbjct: 622 EGMLSDEERNVLTAAGIELAPTTRQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLL 681 Query: 665 SRVMQSDLNLKTAE--------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + + + T + + +++ Sbjct: 682 ASSFIKKIKRMFPDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQT-------W 734 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF------PPLEAQPRTY 770 +R G DF+ ++ +W +K Y+ L Sbjct: 735 KRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKG 794 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S ++ YA +A+ L L F D D G LFH + + Sbjct: 795 SVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALKRIADKLLRENRTW 852 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSS 877 K ++ L+ + I +++ L + +I S + E S Sbjct: 853 ADLSIKECEHLSALVIEEIAPLLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSG 912 Query: 878 IEKIFVNIPAKM----AIESIGIHL--------TGFADRIDLLKSGF---VDITDYK-TG 921 + + +P M ++ + L G DR+D + + I DYK + Sbjct: 913 FVPVDLEVPFGMGGTGSLPPMEFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSS 972 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + Q+ + + + + A + Y + Sbjct: 973 KALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGSTASPAGVLYFHI 1019 >gi|257415726|ref|ZP_05592720.1| exonuclease RexB [Enterococcus faecalis AR01/DG] gi|257157554|gb|EEU87514.1| exonuclease RexB [Enterococcus faecalis ARO1/DG] Length = 1196 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|225012051|ref|ZP_03702488.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A] gi|225003606|gb|EEG41579.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A] Length = 907 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 81/442 (18%), Positives = 161/442 (36%), Gaps = 56/442 (12%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + LI +T+ + S L I+G LE+RLL+FD +I+ +NEG+ P ++ Sbjct: 477 VFEMLIQNQTLDFSGDALSKLQIMGILETRLLDFDNVIITHVNEGIIPFGKTSVSWIPFD 536 Query: 668 MQSDLNLKTA-EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT-IASRWLQRLLVLGGT 725 ++ + T E+ A H F + + + + + + SR+L +L Sbjct: 537 VKKKFGMNTFIEQDHLYAYHFFRLLQRAKKVFLLYNANPEGLFSGEKSRFLVQLEYFKSP 596 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 ++ + + + K E +S S + Q I +PY Sbjct: 597 KHELTFRQVDLPFNNLIDSVKPAIKTKAVL----VQLNEMAKEGFSPSSLTQYIRNPYLF 652 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-----NTPEINHLMKQIID 840 Y +R+LK+ + + + D+GT+ H ++ L +N+ + ++ H + + + Sbjct: 653 YEQRMLKIKPLDTLELNLSAMDKGTIMHKVLEVLYLPFVNQSLSLNDFDQMLHKLPETLK 712 Query: 841 SHFEKE----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-------------EKIFV 883 F + + I + +I SF+ E ++ S + ++V Sbjct: 713 DCFNDLYKNDDHRTGKNHIVFRVMEQILRSFILMERELVSQGNTLIIKALEHIFCKPLWV 772 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-----------KETAQKL 932 K + G DRID L +G + DYKTG+ +K Sbjct: 773 EKIKK------EVVFKGTVDRIDSL-NGVLRFVDYKTGNVEANDLAYYEMSEVTSDPKKS 825 Query: 933 IDPQLSLEAAALKAG-----SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 Q+ L + LK + + K ++ + K KK D Sbjct: 826 ALFQVFLYSYVLKEEFSNQDCLAGVIPLKNYENSFL-VTSKRITS---KTKKTLLIDSKV 881 Query: 988 EKSLK-NLIEIVTLLQNGEQPF 1008 ++ + L ++ + + PF Sbjct: 882 HEAYENELFLLIEEIYDPSIPF 903 Score = 82.3 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 68/262 (25%), Gaps = 39/262 (14%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L V I VP+ R+I L+ I P I S+ D ++E + + + +L Sbjct: 17 QELDRVKIIVPSIRSITFLKEALKNEIDV-PKIAPEIISVEDFIKELSGLERISNMDL-- 73 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 L + +P S A L + +++ Sbjct: 74 ---------------------LYTFFGVYFQNTPKEKQDSMEQFFNWAPTLIQEFNEMDS 112 Query: 162 EEKKWEDLHALKNEKY-GMWW---------LLAADFLKIASKYWT---ERLVELNASSPV 208 + L + W +F K + + L Sbjct: 113 QLVDSNSLFDFMDAVGNIEKWDPKVKDNIKSRHLNFQNEIPKLYKLLFKELFNNQEGYAG 172 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 +R A + + + G A ++ + + A VL +D Sbjct: 173 MQLREAVRNLAFYTEQELPFHYFV-GFNALSKAEETIIQELL-ATDRAEVLWDIDEQFFN 230 Query: 269 AIWNTITEKSTNITSSNTTYST 290 + + S+ + Sbjct: 231 DPFQGAGHFIRHYFSNWNALKS 252 >gi|329117385|ref|ZP_08246102.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD 2020] gi|326907790|gb|EGE54704.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD 2020] Length = 1088 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 121/966 (12%), Positives = 261/966 (27%), Gaps = 140/966 (14%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 E LS+ + + L D+ + + L A L Sbjct: 100 EDDLSVYSQLRADLTFVEQLKDLYKEL--------KISNLSVFDISFENERKAHDLITIF 151 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVAN 251 E L + HL + + +I G T L++ + + Sbjct: 152 TKIEEVLQAESLVQENPLNSLTDHIIQGHLDQELSTTVLVIDGFTRFSAEEELLVAALND 211 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 ++ + + S H Q ++++ ++ + Sbjct: 212 KCQEVVIGTYISKKAQAKSYIE-GNLYQASLDFMRDLSGHFQAK----MEYVTSQQSFHE 266 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 G +S + + + P + + + ++ N++EE Sbjct: 267 EFGLLSELLEAEADFTQTDKMLP------------------AQARERIHIWQSLNQKEEL 308 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLE---LTRFGINIDISAGIPLSTTLHSS 428 IA A+R L + + ++ ++ ++ I + + Sbjct: 309 EHIAKAIRQKLYQGHRYKDILVLLGDVEAYQAQIGPVFDKYEIPYYLGRSEAILHHPLVQ 368 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + SL I L+K L + + DI Sbjct: 369 FVESLERCRSYNWRREDIVNLLKSGLFGHFEKD----------WVDQFEAYVEFADINGY 418 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-----VTYKTNKNS 543 + + D E+ + + + L + Sbjct: 419 TKFSRPFEVNSTD-------GNNHFRFDLEIVNQIREFSFSNLAQLFKSQKQKGLSLLEK 471 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 L+ D K + +E +E KT S+ + K Sbjct: 472 LMTLLNAVDLPKNFQEMMTVQDENEQE-----RDQEVWKTFVSILEDFQLVFANEKLTLD 526 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + ++ + + + + + ++ GL + +PK T Sbjct: 527 QTLSLLKMAMQAANYRAVPATLDVVTVKSYDLVEPHSKPFVMALGLTQNNFPKKTKNTSL 586 Query: 664 LSRVMQSDLNLKTAEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIA 712 +S +S N + A + F T L+ + L N Sbjct: 587 ISDQERSQTNEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNESSEDM 646 Query: 713 S--------------------------------RWLQRLLVLGGTDFFDNLKKRGQC-YL 739 S L +L+ + L++ + + Sbjct: 647 STYLKSVHQYGIPIEEKGKNNLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWT 706 Query: 740 DWTRKLDYTTKQPHYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYA 784 R L + + P+ E +P + S S + ++ Y Sbjct: 707 VMLRYLKKRLANENLQFPQAKNHLETKAISEEVMSLRYPEQKPMSLSTSALTVFFDNQYK 766 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--H 842 + + +L L + PD GT H + ++ + + + Sbjct: 767 YFLQYVLGLQELQTIH--PDARQHGTYLHKVFETIMGDHRPIDFDQKVEDALNVTRQNNQ 824 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 F+ L + I+ S + Q+ ++ + ++ I + + + G Sbjct: 825 FKHFYLEDAQGRYSLQVLEDIAKSTAGILKLNQN-LKVLSQEEAFELPI-TQSLLVKGKI 882 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETA---QKLIDPQLSLEAAALKAGSFSQIDCRK--- 956 DRID L + I DYK+ N K ++ QL AAL+ + + K Sbjct: 883 DRIDQLVDDSIGIVDYKSSAN--KFDIGCFYNGLNSQLVTYLAALREKAAAMSTEEKAIS 940 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 + Y+ L+ + K D+L E+ K+L + E+ +S Sbjct: 941 IFGAMYLHLQD----PKLDLKDFKQLDDKLVEEVYKDLT-YKGIFLEDEKEKLSDGSYQT 995 Query: 1017 KSNIQS 1022 K+N+ S Sbjct: 996 KNNLYS 1001 >gi|256618696|ref|ZP_05475542.1| exonuclease RexB [Enterococcus faecalis ATCC 4200] gi|257089524|ref|ZP_05583885.1| exonuclease rexB [Enterococcus faecalis CH188] gi|312903645|ref|ZP_07762821.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0635] gi|256598223|gb|EEU17399.1| exonuclease RexB [Enterococcus faecalis ATCC 4200] gi|256998336|gb|EEU84856.1| exonuclease rexB [Enterococcus faecalis CH188] gi|310632998|gb|EFQ16281.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0635] gi|315577473|gb|EFU89664.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0630] Length = 1196 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|322375243|ref|ZP_08049756.1| ATP-dependent nuclease subunit B [Streptococcus sp. C300] gi|321279506|gb|EFX56546.1| ATP-dependent nuclease subunit B [Streptococcus sp. C300] Length = 1091 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 119/964 (12%), Positives = 258/964 (26%), Gaps = 154/964 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLVELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 T + + DL +L +E + + Y + + L+ A Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTTYLNQ-----GQLAQGSQLSHLIEAIEN 178 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + ++ +II G T ++ + GA ++ G S Sbjct: 179 DKVSSDFSQIALIIDGFTRFSAEEEHVVDLLHR--KGAEIVIGA-------------YAS 223 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +S+ T Q S+ + L L K + ++ SF Sbjct: 224 KKGYTSSFTEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHEKMDSFDKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393 + D E + +K ++ + ++EE +A ++R L ++ + L+ Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + +S Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGMPAFQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + D E L +L + L + K + ++ L Sbjct: 434 KFDLERLNALRLRVLAPLETLFASRKQKTENLLQKWNTFLKNAALSKQMQELTATMETLE 493 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E K + + + + + +++ ++ + + T+ + Sbjct: 494 QERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSY 553 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686 + D + GL + PK L+ + LN T E A + Sbjct: 554 DLIAPMTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613 Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG------------------- 723 + M + L+ + N + S +LQ L+ G Sbjct: 614 RYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVSFGFSRIEKKIHQKSLSKDDMG 673 Query: 724 ---------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKP------- 759 G L +KLD P Sbjct: 674 SYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733 Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S S + + + Y+ + R +L L + PD G H I Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EEVRLRPDARSHGNFLHRI 791 Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 +K + + + + + FE + + ++ + H + Sbjct: 792 FERALKLPVENSFDQHLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850 Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925 +IE I + ++ +H+ G DRID L G + + DYK+ Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS----S 906 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 Q ++ QL AALK Y+ + + + Sbjct: 907 LTQFQFPYFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLLAVKSLAG 961 Query: 981 YSAD 984 A+ Sbjct: 962 AVAE 965 >gi|170079560|ref|YP_001736193.1| hypothetical protein SYNPCC7002_F0007 [Synechococcus sp. PCC 7002] gi|169887229|gb|ACB00938.1| conserved hypothetical protein [Synechococcus sp. PCC 7002] Length = 889 Score = 162 bits (410), Expect = 3e-37, Method: Composition-based stats. Identities = 126/962 (13%), Positives = 258/962 (26%), Gaps = 133/962 (13%) Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 ++ ++ A+ + L + +L + + + + + +A ++ Sbjct: 24 AQAIAPTRQT---AKRLKQLPYSLTSLAAELLWQKGIRVLNPLEQYRYFKQAIAATLNPT 80 Query: 160 ETEEK--KWE-DLHALKNEKYGMWWLLAADF-------LKIASKYWTERLVELNASSPVG 209 + E W + L F L + +L N Sbjct: 81 DLEGTVQTWRGAIQELLQT--SRELDALKKFETPKIQQLYQVIHAYQAQLEADNVVDSAA 138 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + E + I G + +A P+ + LP +D Sbjct: 139 ALWRAIALE------PDLKTLCIYGYPDPRADEIAFIEAIA-APDSLLYLPQVD---DQP 188 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 +++ PQ L K L + +D + Sbjct: 189 LFS-------------------PQAELIKRLQGKGWQLDDSQ------------------ 211 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKK 387 P + ++ V N EA ++ L + + Sbjct: 212 ---PETLTLGDRLSQKFFGQNSVNFEPKTVQAHVYPNWEAEARGTLGQIKQLLQQGVAAR 268 Query: 388 KSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 K A++T + N + + + + + I L T + L LL I F Sbjct: 269 KIAIVTNEDNHWGPLLLHVAQEYDVPLSLPNPISLQKTRLGAWLEQLLTVIETNYSFEVT 328 Query: 447 ATLVKHPLAKFGFPE-KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 A + HPL E +R A + + DL L + + Sbjct: 329 AQWLSHPLTHPLGREFWQAARTLKPNHFEAWQALTQEHYQWDLAVLQPPQQGSFLVWREY 388 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + + + + + + I L + T+ T + ++ L Sbjct: 389 LKEILNVLKVRRRALPWVTETVAYKKLIDGLDSLGTSLTETMTWEMFQAEIRTSLQLLTT 448 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI--EWIDIITRLIDGETVKPK 621 + + I + +D TR + + + Sbjct: 449 PAYPMRGGVGVHNPQNLIGAQYDYIFCIDGAEGVMPRPLRDEPVLDFYTRKQLSDKLPIE 508 Query: 622 I----EKSSTLFILGTLESRLLNFDTLI-LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + L+ F G EG + A F L L+ Sbjct: 509 GAIAKARREQFQFYSLLQVPQKQFTFSYSTLGQGEGRYRSQVASIYF------KKLGLQP 562 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + I AA R T+S L + + Sbjct: 563 KKTSIAIAA----SVAEARQFYLTQSQIP-----------TELQSETLDQAIAAHQIEQR 607 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 LD P + T+S S++ QL P+ +A ++LKL + Sbjct: 608 RL--QKSALDEYQGLIGVPFPW-------REHTFSASQLLQLGQCPFKWFAGKVLKLAAL 658 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKENLPP-HID 853 + + + RG L+H ++ + ++ +K + LP Sbjct: 659 DEPETTLEPSQRGILYHKVLELALNAYRENPDLDLTDFEQLKAWFIEAEDVLKLPELSAW 718 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL-LKSGF 912 + + E + + + + +TG+ DRID + Sbjct: 719 ERQCTEHIQTLQRAIAAPEFLPEGRHVFRLEDKIQFTWQD--FRITGYIDRIDQISGTNE 776 Query: 913 VDITDYKTGDNPKKE-TAQKLI---DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 + I DYKT +P K + + D QL + A+++ Q +V Y L + Sbjct: 777 LVIMDYKTSSSPPKGIQDESGLLKIDLQLPIYEASVQH----QYPEFQVKQNLYYSLTKG 832 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K+ + D+K + + L + E + + ++ + Sbjct: 833 KKLSSKSPDEKD------LQAAGDRLK-----IHLEEGSYPVAPDKKYDACKYCDFKSVC 881 Query: 1029 RV 1030 R+ Sbjct: 882 RI 883 >gi|307288583|ref|ZP_07568567.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0109] gi|306500490|gb|EFM69823.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0109] gi|315165523|gb|EFU09540.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX1302] Length = 1196 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 110/955 (11%), Positives = 247/955 (25%), Gaps = 147/955 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG----MWWLLAADFLKIASKYWTERLVEL 202 + L + + + +L+ ++ L L + + ++ + Sbjct: 125 GFIQQLFQLYQEMREGNIEIAELYPFLEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQY 184 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLP 260 S +++ +E+L + +I+G +L+ + V Sbjct: 185 GYES-----AEIIQHLSEYLQTVDLSNVQFVISGYQQFTARELKLIEVLMAQAGSVKVAL 239 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 LD P + + + + H Y LA+ K++ +S+ + Sbjct: 240 LLDKQYPHDLPDPRSLFYEAGQTY------HQLYQLAR-----------QKQIPILSDYV 282 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + ++I+ L + + + L A+N +EE +A +R Sbjct: 283 EKKEVLITNPDLQGLNDYWIQSQEHLPPLSTTDWRGDGLLLWRAENVKEELTHVATEIRR 342 Query: 381 SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + E K+ ++T D + ++ I + + + + + SL Sbjct: 343 LVVEEGYRYKEIQVLTRDLDCYENLLEPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAI 402 Query: 437 IFKLNDFMAIATLVKHPLAK--------------FGFPEKYLSRAKNALELVALRGNKNS 482 + + ++ L + R + E V L Sbjct: 403 HSYNYRYRDVLRFLRTELFMPMNQLATSEESLTDWLNQRNAWRRKVDITENVVLAYGYEG 462 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 Y K R + S ++ L+ Q + Sbjct: 463 YYWSQEKDWEFIRYDFEAEEQEDVATMEEESNAIRQSLQRLLPSYFQAMISAKNGLEAAT 522 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 L S + E+ L SL + + + Sbjct: 523 VFYHFLLQSGVATQLKMWRLQAIEAGQLETAR-NHEQTWDALMSLLDEYVTVYGESSFDF 581 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +I ++G + + +R G+ E ++P+ Sbjct: 582 TTFQEIFVSGLEGLHYSKVPTAIDQVQVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKT 641 Query: 663 FLSRVMQSDLNLKTAE---------KYIGQAAH--DFEMANGTRHLIYTR-SLRENNIPT 710 LS + +N E + I Q + ++ L T S+++ Sbjct: 642 LLSDEERQAINDTLTENQYLRGTTGRKIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEV 701 Query: 711 IASRWLQRLLVLGGTDFFDNLKK-----------RGQCYLDWTRKLDYTTKQPHYKRPKP 759 S + + + F+ + Y +L +Q + Sbjct: 702 KPSPYFKNIQKDLNLPVFEKNETTIFDDETTSLSHISTYRTLIGELTRLKRQRKETQEGL 761 Query: 760 FPPLEAQPRTY----------------------------------------SFSEIKQLI 779 P + S S ++ Sbjct: 762 LPFWLNMEKALMNQSIAPLAKQVFESLTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFY 821 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLMKQ 837 Y ++R L+L F G FH + + K +N E+ Sbjct: 822 RCQYQYFSRYGLRLKERDVF--GLSPAATGEFFHEALDQFFKLLIMNQRNLSELTDQEVN 879 Query: 838 IIDSHFEKENLPPH-------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ L I K+ S+ + +S + + Sbjct: 880 LLAEEVLNSILGDARFSVLTTSSRMNYIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTE 937 Query: 885 IPA------------KMAIESIG-IHLTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKE 927 + ++ +++ G IH+ G DRID L + DYK+ Sbjct: 938 VLFGQIAAKKGISGLELPLKNQGKIHVRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMT 997 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKY 981 A + Q+ + + K A Y+ + +D ++ Sbjct: 998 EAYYGLAMQMLTYLDVALMDAVQLVGQEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|290889813|ref|ZP_06552900.1| hypothetical protein AWRIB429_0290 [Oenococcus oeni AWRIB429] gi|290480423|gb|EFD89060.1| hypothetical protein AWRIB429_0290 [Oenococcus oeni AWRIB429] Length = 1161 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 120/976 (12%), Positives = 269/976 (27%), Gaps = 154/976 (15%) Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + P L++ A N+A+ + I ++ L Sbjct: 101 LVGQVLRELPIEKLNIFARSARMPGFVANVAEQLLEIWRSGLTASEILPLHQFDDR--LS 158 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L + L + + A ++ + G +G + Sbjct: 159 EKIKVLALIETKILPSLKDYSLPDDALRNFATQISKIDLKNCNFY----FEGFSGFTASE 214 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+ + + D + I T S+ + Y +L Sbjct: 215 LSLVKALISA----------DRKTQLGKKSEIVFSLTGEQQSDQYGEGNLFYRANQLFKN 264 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + S + + + + + F ++ Sbjct: 265 ---EFSSARVWIVSNIRPLSESQLNFEQSWRELETQGFTSQK---------RSFPQTKIV 312 Query: 363 EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417 + ++ E +A ++R L +N K A L + R+ + + Sbjct: 313 VSSDQEHEIDFVARSIRQRLVDNPKLRAKDILVLAQRLDGYKNIIPKIFDRYDLPYFLDK 372 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 +S +S+ +LL + I + + L + + + + + Sbjct: 373 DTRMSDHPLASLAENLLG-SSNEFAYERIMKIFRTGLLSWQLEDNFQTALDYLENYLLAN 431 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 K + L+ N+ H L++ + I ++ Sbjct: 432 NPKEKNWRQEEFQLIQISDEQDLNDDHKID----------RQINALINRMRLFIIKILDD 481 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDE----HRKLPNLWFEEEGKTLSSLFSKIIE 593 K + N K L + +D+ + ++ K L S ++ + Sbjct: 482 FQEKFAKVENYH--QAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTLDEVDQ 539 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 K + +++ I+ + + + + + +F L ++ Sbjct: 540 LIGDKKYSQKDFLQILKDGFAAASFSGIPASLDQITVSESGIVQRNDFKALYFIDASDAS 599 Query: 654 WPKNTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIY 699 P T + + + L + E + + T + + Sbjct: 600 LPAQTNSSSLIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTF 659 Query: 700 TRSL-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDY 747 + S R + S +L+RL + +L + +D+ L Sbjct: 660 SYSKLRLDGKQNELSPYLRRLSLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQ 719 Query: 748 TTK--------------------------------QPHYKRPKPFPPLEAQPRTYSFSEI 775 T + QP RP+ L + S S+I Sbjct: 720 TAQNFGEDFIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQI 779 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ ++PY + + L+L F D GT +H+I ++I + I K T Sbjct: 780 EKYYSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIGKRTD-----F 832 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSS 877 + D +K + ++I F ++ S L H ++ Sbjct: 833 HDLSDQELKKLSQESAQNLIELPDFQILQSDDHFRAVARSLTGDVLLTLKLMHRANRLNN 892 Query: 878 IEKIFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDY 918 I + ++ + L G DRID + I DY Sbjct: 893 SRPIKTEAVFGKLSSDQQREQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDY 952 Query: 919 KT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 K+ G A + QL AL S S+I + +++++ K Sbjct: 953 KSNGKVFDFRDAYVGTELQLLTYWLALSKNS-SRIGINQPGGAVFVQIRNKPADISQALA 1011 Query: 978 KKKYSADELSEKSLKN 993 + + +++ + Sbjct: 1012 HQIQLDQLIGDRAKQQ 1027 >gi|116490405|ref|YP_809949.1| DNA helicase/exodeoxyribonuclease V, subunit B [Oenococcus oeni PSU-1] gi|122277406|sp|Q04GY8|ADDB_OENOB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116091130|gb|ABJ56284.1| DNA helicase/exodeoxyribonuclease V, subunit B [Oenococcus oeni PSU-1] Length = 1161 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 120/976 (12%), Positives = 269/976 (27%), Gaps = 154/976 (15%) Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + P L++ A N+A+ + I ++ L Sbjct: 101 LVGQVLRELPIEKLNIFARSARMPGFVANVAEQLLEIWRSGLTASEILPLHQFDDR--LS 158 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L + L + + A ++ + G +G + Sbjct: 159 EKIKVLALIETKILPSLKDYSLPDDALRNFATQISKIDLKNCNFY----FEGFSGFTASE 214 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+ + + D + I T S+ + Y +L Sbjct: 215 LSLVKALISA----------DRKTQLGKKSEIVFSLTGEQQSDQYGEGNLFYRANQLFKN 264 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + S + + + + + F ++ Sbjct: 265 ---EFSSARVWIVSNIRPLSESQLNFEQSWRELETQGFTSQK---------RSFPQTKIV 312 Query: 363 EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417 + ++ E +A ++R L +N K A L + R+ + + Sbjct: 313 VSSDQEHEIDFVARSIRQRLVDNPKLRAKDILVLAQRLDGYKNIIPKIFDRYDLPYFLDK 372 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 +S +S+ +LL + I + + L + + + + + Sbjct: 373 DTRMSDHPLASLAENLLG-SSNEFAYERIMKIFRTGLLSWQLEDNFQTALDYLENYLLAN 431 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 K + L+ N+ H L++ + I ++ Sbjct: 432 NPKEKNWRQEEFQLIQISDEQDLNDDHKID----------RQINALINRMRLFIIKILDD 481 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDE----HRKLPNLWFEEEGKTLSSLFSKIIE 593 K + N K L + +D+ + ++ K L S ++ + Sbjct: 482 FQEKFAKVENYH--QAVKTLYNWLTDQQVDQVLLNQANDGDDRGQQTWKLLLSTLDEVDQ 539 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 K + +++ I+ + + + + + +F L ++ Sbjct: 540 LIGDKKYSQKDFLQILKDGFAAASFSGIPASLDQITVSESGIVQRNDFKALYFIDASDAS 599 Query: 654 WPKNTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIY 699 P T + + + L + E + + T + + Sbjct: 600 LPAQTNSSSLIDDFDRLQLIDDFSKAQKPYYLQDTSRQEMTAENFRFYSSVLSATDSVTF 659 Query: 700 TRSL-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDY 747 + S R + S +L+RL + +L + +D+ L Sbjct: 660 SYSKLRLDGKQNELSPYLRRLSLKNVSDLKIEKIPDLPQSQADLVDYLGTANSSAAILSQ 719 Query: 748 TTK--------------------------------QPHYKRPKPFPPLEAQPRTYSFSEI 775 T + QP RP+ L + S S+I Sbjct: 720 TAQNFGEDFIDGLTDLLIKRNPYFQRILQALHYNNQPVTLRPELIKKLFGEDLRLSISQI 779 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ ++PY + + L+L F D GT +H+I ++I + I K T Sbjct: 780 EKYYSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIGKRTD-----F 832 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSS 877 + D +K + ++I F ++ S L H ++ Sbjct: 833 HDLSDQELKKLSQESAQNLIELPDFQILQSDDHFRAVARSLTDDVLLTLKLMHRANRLNN 892 Query: 878 IEKIFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDY 918 I + ++ + L G DRID + I DY Sbjct: 893 SRPIKTEAVFGKLSSDQQREQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDY 952 Query: 919 KT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 K+ G A + QL AL S S+I + +++++ K Sbjct: 953 KSNGKVFDFRDAYVGTELQLLTYWLALSKNS-SRIGINQPGGAVFVQIRNKPADISQALA 1011 Query: 978 KKKYSADELSEKSLKN 993 + + +++ + Sbjct: 1012 HQIQLDQLIGDRAKQQ 1027 >gi|325696016|gb|EGD37907.1| exonuclease RexB [Streptococcus sanguinis SK160] Length = 1093 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 119/924 (12%), Positives = 255/924 (27%), Gaps = 139/924 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L E + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIADFAQHILAGDTDEELADLALVIDGFTRFSAEEEFLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGASK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRHRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-CHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN + + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLN-EARDSQA 597 Query: 682 GQA----------AHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV-------- 721 + T+ L+ + N + S +L L Sbjct: 598 ELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPII 657 Query: 722 -----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRP 757 L + K Q + R L P Sbjct: 658 VKKPQASSDDIGSYRALLSQIIELHQEEIDREWKAEEQTFWAVAVRVLRKKLAAEGISIP 717 Query: 758 KPFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + QP S S + + YA + + +L+L + Sbjct: 718 QISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIH 775 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLF 860 PD G H I ++++ + + + E E++ R L Sbjct: 776 PDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLL 835 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGF 912 + + S IE I + +E + ++G DRID L K+ Sbjct: 836 LDTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTES 894 Query: 913 VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + + DYK+GD E ++ QL AA++ + Q D Y+++ Sbjct: 895 LGVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT----- 948 Query: 972 DCITNDKKKYSADELSEKSLKNLI 995 D I K + + +S+K L Sbjct: 949 DPIVALKDTKTLADAVNQSMKPLQ 972 >gi|322385778|ref|ZP_08059422.1| exonuclease RexB [Streptococcus cristatus ATCC 51100] gi|321270516|gb|EFX53432.1| exonuclease RexB [Streptococcus cristatus ATCC 51100] Length = 1095 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 119/919 (12%), Positives = 263/919 (28%), Gaps = 133/919 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL+ L+ + L ++ L N + Sbjct: 113 QFIQQLLDLYHELQTAQMTFTDLNYLEEPEKRED-------LLKIFTAFSAALQAGNYDA 165 Query: 207 PVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 I A L ++I G T L+ + G ++ G+ + Sbjct: 166 TSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHR--KGVEIVIGV--Y 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + T + +S Q K + + G +S + R Sbjct: 222 ASQKAYRTSFREGNLYQASVDFLLKLAQTYEVKPVYLAGDSIQSDDAFGKISKILESRY- 280 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 D E + + V + N++EE +A ++R L + Sbjct: 281 -----------------DFSETHVELTAEDRFHVEIWSVRNQKEELEYVAKSIRQRLHDG 323 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + P+S L SL Sbjct: 324 ARYKDIRLLLGDVEAYQLQLKTIFAQYQIPFYLGRSEPMSQHPLVQFLESLERLKRYNFQ 383 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ + + + Sbjct: 384 TEDLLNLLKTGL----------------------YGSLRQEGLDSFEQYLRFAEIKGAAK 421 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 +R + D + ++ ++ + ++ + + S ++ + Sbjct: 422 LGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTVAGLLDKFTSFIKEVRLDDNL 481 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 L+ + EE KT + ++ + K +++ +I + + Sbjct: 482 MGLLEGASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRVVP 541 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + + + GL + PK LS + LN T ++ Sbjct: 542 ATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEERQKLNQATGDESEL 601 Query: 683 QAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVL--------G 723 Q A + F + T L+ + + N + S +L L + Sbjct: 602 QVASSENLKKNRFAALSLLNSATEDLVLSAPVLTNEVEDAMSSYLTELEIAPISLPIISK 661 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP--------------------- 762 + + L L + + Sbjct: 662 QPQASSDDIGTYRALLARVIDLYQEDIDREWTPEEQTFWAVAIRVLRKKLVAEGISIPQI 721 Query: 763 ------------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 QP S S + + + YA + + +L++ + PD Sbjct: 722 SKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKYVLRIQ--EEWTIQPD 779 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHK 862 G H I +++++ + ++ H + ++ FE R L Sbjct: 780 ARSHGIFLHRIFEKVMQEHLEQDFDTRLHRAMEETSWEAEFESIYGENGETQFARRLLLD 839 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLLKS-GFVD 914 + + + +E I + + ++G DRID LK G + Sbjct: 840 TAQATGRILAQSD-GLEVIGEETDFGRGDRPFLLLDNGRALQVSGKVDRIDRLKETGSLG 898 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 + DYK+GD E ++ QL AA++ + + + Y+++ + Sbjct: 899 VVDYKSGDTKFSFEKFFNGLNSQLPTYLAAIRE-MPEYQEDKGIFGAMYLQMTE-----P 952 Query: 974 ITNDKKKYSADELSEKSLK 992 + + K+ + DE ++ +K Sbjct: 953 LASLKETKALDEAVKQVMK 971 >gi|283956858|ref|ZP_06374331.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp. jejuni 1336] gi|283791584|gb|EFC30380.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp. jejuni 1336] Length = 788 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 125/389 (32%), Gaps = 30/389 (7%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + + + KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKAFANLLNKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957 QL+ A F ++ ++ Sbjct: 715 --SYQLAFYQALYDENASVGFYDLNSMQI 741 >gi|257869455|ref|ZP_05649108.1| exonuclease RexB [Enterococcus gallinarum EG2] gi|257803619|gb|EEV32441.1| exonuclease RexB [Enterococcus gallinarum EG2] Length = 1191 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 112/963 (11%), Positives = 251/963 (26%), Gaps = 142/963 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTERL--VEL 202 + L + ++T EDLH L A F L + + + + EL Sbjct: 120 GFIQQLLSLYQEMQTSNIATEDLH-LGGTMNRSNGEDALKFSELALIFQRFELEMVTREL 178 Query: 203 NASSPVGYQIALMRA------EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 P+ ++ ++ II+G + ++ + + Sbjct: 179 QVEQPLALLTRYLQQGSKPNELMNDRPDLSESLFIISGFSAFSTQEQSVLKELMKQGHVV 238 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + L LD P E + + + ++ Q L + + I L Sbjct: 239 VDLL-LDHGYPQ-------ELPSPLDLFYESGRSYHQLFLDARTENVAI------YLDQK 284 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + + + K+ + + Q + + + N EE +A Sbjct: 285 LSPSEAQQVTLEKAAAYNEVESFWRKTQNQLHYQQQQPVSPYLEMWKVGNPEEEVRQMAA 344 Query: 377 ALRMSLDEN------KKKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +R + E + ++T + + + I I ++ Sbjct: 345 KIRALISEQKGAKLRYRDIQVLTLQPEIYHQYIPTIFKEYEIPFYIDEEQLMAQHPLVEF 404 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNALELVALRGNK 480 L + I L++ L + + + E AL N Sbjct: 405 LNAFFACADYGFRLNDIFRLLRTELYLPQAFQQQEDWLAARDAFRQLVDITENQALAHNF 464 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D + +L N + + + + + L+ I T + Sbjct: 465 QGKDWTRERDWLLVDYTLTGENASGIAELTDYTNQLRRYFRQDIFGSLKNIQETKTNREA 524 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + L + + + + + + E+ + L L + + Sbjct: 525 AGALYQFLLSAGVEQQLIHWRDQ-AISQGKLEQARNHEQTWQALIDLLDEFVAIYGDDPF 583 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + +++ ++ T + I R + GLNE V P+ Sbjct: 584 EQSLFEEVLMTGLENLTFGKIPTAIDQVNINRFDLVRPRQAKITFVPGLNETVLPRRIEN 643 Query: 661 NPFLSRVMQSDLNLK------TAEKYIGQAA---HDFEM--ANGTRHLIYTRSLRENNIP 709 L+ + LN + I +A F + T L + + + Sbjct: 644 KTLLTNEERQHLNQLFAGEKYLRDTIIESSAKEPFLFYAILLSSTDKLYLSYACNFDTQQ 703 Query: 710 TIA-SRWLQRLLVLGGTDFF-----------------------------DNLKKRGQCYL 739 I S +L RLL +K Q Sbjct: 704 NIKLSPYLARLLEWLDVSLQDRGILSLTSDPEAYVGTYRGLIYQLNNLSQQARKERQNLP 763 Query: 740 DWTRKLDYTTKQPHYKRPK------------PFPPLEAQPRTY-------SFSEIKQLIN 780 ++ K+ P P + + S S+++ Sbjct: 764 AQWQRFKQALLHSPEKQLALRVFESQTHQNIPVPLSQDKAVALYGPSIYSSISQLETFYQ 823 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI-----------NKNTP 829 Y + L+L + G FH+ + +K I ++ Sbjct: 824 CEYKYFVSYGLRLKERE--IYGLNSAMTGEFFHDALDRFVKVLISENISLTQLTMDQRLQ 881 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA 887 + ++++I R+ K + ++ + + Sbjct: 882 FVEKVLQEIFGEVRYTLLSSSARMNFIRYQLGKTIQRVAWALTKQGQKMHFSPQKTEVLF 941 Query: 888 ----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTGDNP-KKETAQ 930 + + +H+ G DR+D + + DYK+ A Sbjct: 942 GQIAGAQGINGIELPLSSGGKLHVRGKIDRVDAAKTEEEQWLSVVDYKSSSREFDLTEAY 1001 Query: 931 KLIDPQLSLEAAALKAGSFS--QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + QL + + + A +Y+ + D +K S +E + Sbjct: 1002 YGLAMQLITYLDVALNDAVQLVGTENVRPAGAYYLHV------HDPVLDGQKSSEEERLK 1055 Query: 989 KSL 991 + Sbjct: 1056 QFK 1058 >gi|157415706|ref|YP_001482962.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni 81116] gi|157386670|gb|ABV52985.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni 81116] gi|307748347|gb|ADN91617.1| Putative uncharacterized protein [Campylobacter jejuni subsp. jejuni M1] Length = 788 Score = 162 bits (409), Expect = 4e-37, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 127/389 (32%), Gaps = 30/389 (7%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELVYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFALSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957 QL+ A F ++ ++ Sbjct: 715 --SYQLAFYQALYDENANVGFYDLNSMQI 741 >gi|325694959|gb|EGD36864.1| exonuclease RexB [Streptococcus sanguinis SK150] Length = 1093 Score = 162 bits (409), Expect = 4e-37, Method: Composition-based stats. Identities = 118/923 (12%), Positives = 255/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L ++ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMELYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 RAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVDSLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGASK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TVLLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPTLVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTTEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPHEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|315930995|gb|EFV09970.1| hypothetical protein CSU_1749 [Campylobacter jejuni subsp. jejuni 327] Length = 788 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 126/389 (32%), Gaps = 30/389 (7%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E + I ++ + ++G LE Sbjct: 376 EKQELVYLIRKELYFIKDLLKNQSLTLKELTHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFALSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYANNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G P Sbjct: 661 FSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKV 957 QL+ A F ++ ++ Sbjct: 715 --SYQLAFYQALYDENANVGFYDLNSMQI 741 >gi|257082925|ref|ZP_05577286.1| exonuclease RexB [Enterococcus faecalis E1Sol] gi|256990955|gb|EEU78257.1| exonuclease RexB [Enterococcus faecalis E1Sol] Length = 1196 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 HPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|293374972|ref|ZP_06621267.1| ATP-dependent nuclease subunit B [Turicibacter sanguinis PC909] gi|292646382|gb|EFF64397.1| ATP-dependent nuclease subunit B [Turicibacter sanguinis PC909] Length = 1188 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 119/995 (11%), Positives = 274/995 (27%), Gaps = 168/995 (16%) Query: 147 WLAKNLADIIDIIETEEKKWEDL-HALKNEKYGMWW----LLAADFLKIASKYWTERLVE 201 + ++I + L ++ ++ W + + + I + + + Sbjct: 118 GFISKVGEMIAEFKNYCVTPNQLFQTIQTQQEISNWSVQSVKKINDIAILYDEFEK--LS 175 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 L L+ + + I G ++ + + ++ Sbjct: 176 LGRYLMTEDYYTLLSEQIAYSSTIANSDFYIDGYHLFNKQEELILLQLMKYAKSVTIVLT 235 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D + +++++ P + +KL L E++ + Sbjct: 236 HDLNSTSSVFSL------------------PSRTYSKLASQL----EEMGLNYEIQELTE 273 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 G S + + + + + P ++ V +A N R E +A + Sbjct: 274 GNHRFKSD-------TALAHLEKQFMQFPTVKSEAKGVHFFQAANSRLEVEEVAKRIHHL 326 Query: 382 LDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + A+ TA + + +F I + + + +L + + + Sbjct: 327 IHKEGYAFNDIAIYTAQSEEYQELIASIFPKFEIPVFLDYKESMLIHPLMVLLYHVFDVM 386 Query: 438 FKLNDFMAIATLVKHPLAK----------FGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ ++K L F + R + LE L D Sbjct: 387 MNGWRHESMFMIIKTGLFMDVSQIKKQQSFYEAFQAYQRQVDVLENYCLARQIKKQDWQQ 446 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 V ++ + + L + + L KT K Sbjct: 447 KDDWVYEKYQGLGRGYVKTDDDLAVEDLLNTLKKQISSLLTSFEKKLKKAKTYKEFAVAT 506 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + + ++ E + L ++ + LF +++E G + + Sbjct: 507 FTFLEEAQIPQKLALLESSAEETQHLKLLKQHQQVWNKVLELFEQLVEIGQEEAVSLENF 566 Query: 606 IDIITRLIDGETVKPKIEKSSTLFIL-----------GTLESRLLNFDTLILGGLNEGVW 654 + ++ + + + + E+ + G+NEG Sbjct: 567 ATVFKAGLEEMSYATVPPRLDQVSVGELRRARYQLVTDLGEAGQYGIKHAFVLGVNEGQI 626 Query: 655 PKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRH--LIYTR-SLRE 705 P ++ LS V + L + E+ + L + S + Sbjct: 627 PSVMGESSLLSEVEREQLKELGIELAPSLEQSQQDEQFILYTVFTSPKQTLTLSYVSSND 686 Query: 706 NNIPTIASRWLQRL--------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR- 756 + S +L G +F D+L ++ L KQ R Sbjct: 687 EGKEFLPSYVYNQLKEMFPLSQEAHIGREFDDDLYEQLTTLNQSVAHLLAHLKQNPAYRS 746 Query: 757 -PKPFPPLEAQPRTY---------------------------------SFSEIKQLINDP 782 +P + S S ++ Sbjct: 747 YYEPLLAYYKEHNPLIYQMVMRILGYENEVTNLDEVLTKKLYSEEIVASVSRLELFNQCE 806 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK------KRINKNTPEINHLMK 836 +A Y R L+L + D G L+H + + + T + + Sbjct: 807 FAHYLRYGLQLKDRE--RYQLDLPHIGELYHEALKRIATMIQKENRTFADLTQDECQTLA 864 Query: 837 QIIDSHFEKENLPPHIDIIWR-----HLFHKISHSFL--EHEEKIQSSIEKIFVNIPA-- 887 +++ ++ L + R + + L + QS + +F +P Sbjct: 865 KMVSDELSEQLLYKILKQNKRMMKLTERLTHVVYKTLIGLKYQSSQSEFKPMFFELPFQT 924 Query: 888 ----KMAIESIGI------HLTGFADRIDL--LKSGF---VDITDYKTGDNP-KKETAQK 931 + I+S I L G DR+D+ K + I DYK+ + + Sbjct: 925 GKSNGIHIDSRPIGKGFKLSLKGIIDRVDVAKSKDESQAYLRIVDYKSSQQDLELDKVYY 984 Query: 932 LIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + QL + + ID +V L Y + + I+ D + D E+ Sbjct: 985 GLSLQLLTYLDVVVTNALQLIDMPAEVGGLLYFHVHRPI----ISKDDQDLLRDVALEEQ 1040 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L + + + ++ +YD Sbjct: 1041 ILRLHQ--EDFK--MKGYLP-----------DDYD 1060 >gi|315144625|gb|EFT88641.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX2141] gi|315160944|gb|EFU04961.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0645] Length = 1196 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|86151958|ref|ZP_01070171.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841066|gb|EAQ58315.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 788 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 59/457 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K +N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYVNNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S + + + + I L G DRID K G + I DYK+G Sbjct: 661 FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNL-IIDYKSGKVSSN----- 714 Query: 932 LIDPQLSLEAAALKAG---SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 QL+ A F ++ ++ +K S DEL Sbjct: 715 --SYQLAFYQALYDENANVGFYDLNSMQI------------------LHQKAKSLDEL-- 752 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + L ++V L+ E F + + Y Sbjct: 753 --RERLKDLV-LMSKEEIEF------ENEQDEYCPYK 780 >gi|323480351|gb|ADX79790.1| exonuclease RexB [Enterococcus faecalis 62] Length = 1196 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYNFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLTKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|256962292|ref|ZP_05566463.1| exonuclease RexB [Enterococcus faecalis Merz96] gi|293383321|ref|ZP_06629236.1| exonuclease RexB [Enterococcus faecalis R712] gi|293387522|ref|ZP_06632071.1| exonuclease RexB [Enterococcus faecalis S613] gi|312905828|ref|ZP_07764848.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis DAPTO 512] gi|312909117|ref|ZP_07767976.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis DAPTO 516] gi|256952788|gb|EEU69420.1| exonuclease RexB [Enterococcus faecalis Merz96] gi|291079344|gb|EFE16708.1| exonuclease RexB [Enterococcus faecalis R712] gi|291083032|gb|EFE19995.1| exonuclease RexB [Enterococcus faecalis S613] gi|310628167|gb|EFQ11450.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis DAPTO 512] gi|311290541|gb|EFQ69097.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis DAPTO 516] Length = 1196 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 117/989 (11%), Positives = 262/989 (26%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQHA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLL---------------- 720 I Q + ++ L T S+++ S + + + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 721 -------------VLGGTDFFDNLKKRGQC-------YLDWTRKLDYTTKQPHYKRP--- 757 + ++R + +L+ + L P K+ Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLTFWLNMEKALMNQPIAPLAKQVFES 787 Query: 758 ------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 PL + S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLSVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|327474834|gb|EGF20239.1| exonuclease RexB [Streptococcus sanguinis SK408] Length = 1093 Score = 162 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 117/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + ++ Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHRKGVEIVIGTYASKK 225 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 A + ++ L KL + +K + + Sbjct: 226 AYRAAFREGNLYQASVDF------------LRKLAEDYQVKPDYIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 ++F D E + + S + + N++EE +A ++R + + Sbjct: 262 ESEEAFGRISKILESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFFQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ ++ + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDLSADFDRRLARAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|257422971|ref|ZP_05599961.1| exonuclease rexB [Enterococcus faecalis X98] gi|257164795|gb|EEU94755.1| exonuclease rexB [Enterococcus faecalis X98] Length = 1196 Score = 162 bits (408), Expect = 5e-37, Method: Composition-based stats. Identities = 114/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEIKKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|312899587|ref|ZP_07758913.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0470] gi|311293266|gb|EFQ71822.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0470] Length = 1196 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 254/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I +G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LMHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|283953894|ref|ZP_06371424.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp. jejuni 414] gi|283794673|gb|EFC33412.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp. jejuni 414] Length = 788 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 84/433 (19%), Positives = 138/433 (31%), Gaps = 59/433 (13%) Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 E I + I ++ + ++G LESR L FD +IL NE PK + Sbjct: 400 LTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSI 457 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQR 718 FL+ ++ L + ++ +E + E SR+L Sbjct: 458 NELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK---SRFLDE 514 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L +FF Q YL+ + K P SFS L Sbjct: 515 LDF----EFFYETHTHQQAYLNALKLDYEGIKPNLTPIKAPVLKHNPFEFPLSFSRFNLL 570 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 N Y R IL L + ++G H ++ K N + ++ Sbjct: 571 ENQKRTYYYRYILNLAEPRFLSDESKAKNQGNFIHKMLEIYYKNYANNDFD------IKV 624 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIG 895 + EKE +I + +F F ++E++ S + + + + Sbjct: 625 FTNLLEKEYQKYNIGELDLEVFKLKFIQFAKNEKEHFSQGFYVAHTELELNNILKLGTDK 684 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQI 952 I L G DRID K G + I DYK+G P QL+ A + F + Sbjct: 685 IKLKGTIDRIDSSKEGNL-IIDYKSGKVPSN-------SYQLAFYQALYDQNASVSFYDL 736 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 + + +K S DEL + L ++ L+ E F Sbjct: 737 NSMQ------------------MLHQKAKSLDEL----KERLKDLF-LMSKEEIEF---- 769 Query: 1013 RLSEKSNIQSEYD 1025 + + Y Sbjct: 770 --ENEQDGYCPYQ 780 >gi|294618394|ref|ZP_06697971.1| exonuclease RexB [Enterococcus faecium E1679] gi|291595344|gb|EFF26660.1| exonuclease RexB [Enterococcus faecium E1679] Length = 1175 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 113/929 (12%), Positives = 248/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + G Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANGFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + ++ ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022 >gi|29375688|ref|NP_814842.1| exonuclease RexB [Enterococcus faecalis V583] gi|227552896|ref|ZP_03982945.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis HH22] gi|81437088|sp|Q836J9|ADDB_ENTFA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|29343149|gb|AAO80912.1| exonuclease RexB [Enterococcus faecalis V583] gi|227177968|gb|EEI58940.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis HH22] gi|315573704|gb|EFU85895.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0309B] gi|315582681|gb|EFU94872.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0309A] Length = 1196 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|315148449|gb|EFT92465.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX4244] Length = 1196 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNSWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|257440574|ref|ZP_05616329.1| putative ATP-dependent deoxyribonuclease subunit B [Faecalibacterium prausnitzii A2-165] gi|257196897|gb|EEU95181.1| putative ATP-dependent deoxyribonuclease subunit B [Faecalibacterium prausnitzii A2-165] Length = 1117 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 113/941 (12%), Positives = 234/941 (24%), Gaps = 131/941 (13%) Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 A ID +++ L L L + + + L P Sbjct: 120 AQTIDELKSAGLSGRQLAQLAGACGAE--SGKLSELALIFQGYETLLARSG-MDPSDRLE 176 Query: 213 ALMRAEAEHLMKG------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 E L + + I RL+ + V D Sbjct: 177 LAGARLEEALARHSLPEFLRDRAVFIDEFDTFNAPKKRLLGAMLAALPSVTVALCDD--- 233 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 S + + L +L + + L R+ Sbjct: 234 --------GAPLLPGDLSLFSGAKQVAAQLRQLARKNGAEVAVPQLLRKDLRH---RNAP 282 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA---LRMSLD 383 + + D +V L A + EEA + A A L Sbjct: 283 GLAAVAELLETGSCTADAPA----------GEVRLFAAPSREEEARAAAGAVRRLMRQGV 332 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 K + + V+ E I + + ++ + +LL + Sbjct: 333 RCGKIAVVCRDIAKYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLEIARGADLT 392 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 + TL K L + + + + Sbjct: 393 ENLTTLAKTGLCALSEEQVCALENYAYTWAPTAAAWREKF--------------ERSPKG 438 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + ++E A ++ + N+ + + K Q Sbjct: 439 FGEQELTEEDLRNRERAEHARALLVGAVDAFRAKVRGVNAEAISRAAYFCLKTLGAEEQQ 498 Query: 564 VC-----LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + E + L +++ E+ D+ L+ + Sbjct: 499 AAQVKAIRADRGIPAAEEAAREWNVVMGLLNEMAHLLGEQTVTVAEYEDLFGLLLRSSDL 558 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-----N 673 + + + + RL D + + GL EG +P + L+ + L + Sbjct: 559 GHIPQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPAAPGEVGLLTHADRDALMAQEID 618 Query: 674 LKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTDFF-- 728 L E + + F A L + + A L L + Sbjct: 619 LPDCFENRVVREQVCFYKALTAPAKGLWLSWPKGQGQTLCAALEPLVEALAPAAPELELT 678 Query: 729 ----------------------------DNLKKRGQCYLDWTRKLDYTTKQPH--YKRPK 758 + L G+ L Sbjct: 679 DLAATPADGLDCLGGGWPLTETERASLTEALHNPGETEPQGLALLRRMADTAPRQVHDLP 738 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 L + S S++++ Y + + +L L + + GTL H ++ Sbjct: 739 ALEALLGRKLRISPSQLEKYYTCRYGYFLQYVLGLRPRR--RAELSADQSGTLMHWVLQM 796 Query: 819 LIKKRINK-------------NTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKIS 864 + + + L ++D + ++ K Sbjct: 797 ALDPHPGPDNPMAALEPFMELDDEAMASLAALLVDEYAKRYLPEDTARFAYLLSRLKKSM 856 Query: 865 HSFLEHEE--KIQSSIEKIFVNIP---AKMAIE--------SIGIHLTGFADRID--LLK 909 S L + + QSS + + + + A+ + L G DR D + + Sbjct: 857 TSLLLYLRDEQRQSSFKPVACELKIGRGEDAVPAQVYHLSDGRTVQLVGTVDRADEWVEE 916 Query: 910 SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 G V + DYKTG + +D Q+ L +L + + A + Y L Sbjct: 917 DGTRWVRVVDYKTGTKKLDLKEVYCGLDCQMLLYLFSLTRDKSGRFTGAEPAGVLY--LL 974 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + T +K +S + + +++ ++ + E Sbjct: 975 ADPAPETTTREKAAHSVEYKLDGLVRDEQKLFDAMDADETG 1015 >gi|229550394|ref|ZP_04439119.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis ATCC 29200] gi|307274586|ref|ZP_07555766.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX2134] gi|312951364|ref|ZP_07770262.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0102] gi|229304516|gb|EEN70512.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis ATCC 29200] gi|306508738|gb|EFM77828.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX2134] gi|310630624|gb|EFQ13907.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0102] gi|315153690|gb|EFT97706.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0031] gi|315156547|gb|EFU00564.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0043] gi|315158290|gb|EFU02307.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0312] Length = 1196 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|306827619|ref|ZP_07460899.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC 10782] gi|304430182|gb|EFM33211.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC 10782] Length = 1071 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 135/986 (13%), Positives = 277/986 (28%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L+ AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LATYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|300859675|ref|ZP_07105763.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TUSoD Ef11] gi|300850493|gb|EFK78242.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TUSoD Ef11] Length = 1196 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDREVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|315170963|gb|EFU14980.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX1342] Length = 1196 Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 253/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSRYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALVLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFGGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEALLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|15674821|ref|NP_268995.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes M1 GAS] gi|81533820|sp|Q9A0H4|ADDB_STRP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|13621953|gb|AAK33716.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes M1 GAS] Length = 1071 Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 136/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKSDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + S N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVSTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LMTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|319939428|ref|ZP_08013788.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus anginosus 1_2_62CV] gi|319811414|gb|EFW07709.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus anginosus 1_2_62CV] Length = 1090 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 120/940 (12%), Positives = 265/940 (28%), Gaps = 137/940 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E L + + L ++ ++ + + DL L ++ AD +KI Sbjct: 97 MEEHDLQVYGGIRTDTQFIQQLVELYHELQAAQMTFADLDYLDEDE------KKADLIKI 150 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249 + L + S + A + K +G ++I G T A L+ + Sbjct: 151 LQLVTHQ-LNQSEFISESNIMVFANHITAGDVDKELQGLALVIDGFTRFSAEEAYLIELL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + G ++ G+ + + + +S L L + ++K + Sbjct: 210 HS--KGVEIIIGV--YASEKAYRATFREGNLYQASVDF--------LRHLANEYEVKP-E 256 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + S ++ + D + ++ ++ S V + N++E Sbjct: 257 YRPATQPDDAFGNISKLLESRY-----------DFSDVELELTEQDRSHVQIWSTVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426 E +A ++R + + K L+ D R ++ I + ++ Sbjct: 306 ELEYVAKSIRQRVHDGARYKDIRLLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + +L+ + LVK L EL D+ Sbjct: 366 VQFIEALVRLKRYNFRTEDLLNLVKTGLYGH----------LKQEELDLFEQYIRFADVK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + D Q + H + L L + + Sbjct: 416 GISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHQFLTTISF 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + + T EE K + + S K +++ Sbjct: 476 SQNFAGLVDFTN------------PQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFL 523 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ + + + + L+ + GL + +PK LS Sbjct: 524 TLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIVQNKSLLSD 583 Query: 667 VMQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRW 715 + LN T E+ + F L+ + N I S + Sbjct: 584 EERLRLNEATDERSELLIAAQENLQKNRFVALSLLNAAMDRLVLSTPQIVNEIENNISPY 643 Query: 716 LQRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTK----------------- 750 L L + + + + L +L+ Sbjct: 644 LLELHEQPIGLPIEVKRSQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVA 703 Query: 751 ------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + ++ Q S S + + + YA + Sbjct: 704 VRVLRKKLESEGISIPNVTSSLTTETLSEQTLQALYPPHQAFLLSASALTEFYRNQYAYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFE 844 + +L L PD G H + ++++++ ++ Q ++ F+ Sbjct: 764 LKYVLALQEEMTIH--PDARSHGNFLHRVFEKVMQEQSSEPFDNRLEKAIQETSQEAEFK 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIH 897 + + + + H + +E I + + + + Sbjct: 822 TLYTENAEALFAHEVLLDTARAT-GHVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQ 880 Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + G DRID LK G + + DYK+ N + ++ QL AALK S+ + Sbjct: 881 IRGKVDRIDRLKIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMN-EEA 939 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Y+++ + K S + ++++KNL Sbjct: 940 HAFGAMYLQMTN-----PLVPLAKTKSQGDAVKEAMKNLE 974 >gi|229056866|ref|ZP_04196262.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603] gi|228720394|gb|EEL71967.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603] Length = 1171 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 119/1040 (11%), Positives = 276/1040 (26%), Gaps = 172/1040 (16%) Query: 58 QELRSEFIEITGKKSTI--LPIIKSL-------------GDVVEEKFTADLLLSYNLNPP 102 E++ E + K+ + +P + G + + F+ L++ + Sbjct: 20 HEVQEELKQRPRGKTILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFS-RLAWKVLQE 78 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V RL + + K+ + KD LS+ A ++L +I + Sbjct: 79 VGGASRLHIDEAGVHMLLRKIVESRKDG-----LSVFQKAAEQNGFFEHLGSMIAEFKRY 133 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALM 215 +++ + + L++ + L+ Y L+ Sbjct: 134 NVTPSNVYEMWQQLDTHSSSAEQKLLANKVYDLQLLYDDFERALIGKYL-DSEDYLQLLI 192 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 ++ I I G P ++ + + +D N + Sbjct: 193 EKLSDS-EYVKGAEIYIDGFHSFSPQELEIVRGLMKLGTRVTITLTIDEKTLAQPVNELD 251 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ I+ E L R + L Sbjct: 252 LFYETTLTYEKI---------KQVAREEKIEIEKTIPLMEQ-----PRFHSPALVHLETH 297 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALI 392 N + V + A N R E +A +R + D + A++ Sbjct: 298 YEARPNEKYHGE---------ASVTISTAANLRAEVEGVAREIRRLVADEDYRYRDIAVL 348 Query: 393 TAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + ++ T + I I P+S + S L I + A+ VK Sbjct: 349 LRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVK 408 Query: 452 HPLAKFGFPEKYLSR------------------AKNALELVALRGNKNSYDIMDL----K 489 L K R + + R ++ D ++ + Sbjct: 409 TELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITDSE 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL------VTYKTNKNS 543 + ++I ++ P + + + + + + + + L + + Sbjct: 469 REMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVHAEE 528 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK---- 599 L +D ++ + + + S + ++ + Sbjct: 529 NGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSLDQ 588 Query: 600 -----ANAIEWIDIITRLIDGETVKPKIEK----------------SSTLFILGTLESRL 638 + DI I G ++ + + T L Sbjct: 589 VLVANIDHSRLSDIKATFIIGVNEGVIPAAPMDEGMLSDEERNVLTAAGIELAPTTRQTL 648 Query: 639 LNFDTLI---LGGLNEGVWPKNTAKN----PFLSRVMQSDLNLKTAE--------KYIGQ 683 L ++ + +E ++ + L+ + + Sbjct: 649 LEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKESFITNDVNDL 708 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + T + + +++ +R G DF+ ++ +W + Sbjct: 709 SRSEQISYVATPEVTLSYVMQQLQT-------WKRYGFEGNLDFWWDVYNFYVTSDEWKQ 761 Query: 744 KLDYTTKQPHYKRPKPF------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 K Y+ L S S ++ YA +A+ L L Sbjct: 762 KSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQHGLSLRERD 821 Query: 798 HFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQIIDSHFEKEN 847 F D D G LFH + + K ++ L+ + I +++ Sbjct: 822 IF--KLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSTLVIEEIAPLLQRQI 879 Query: 848 LPPHIDIIWR-HLFHKIS--HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHL-- 898 L + +I S + E S + + +P M ++ + L Sbjct: 880 LLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFALAN 939 Query: 899 ------TGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS 948 G DR+D + + I DYK + + Q+ + + + Sbjct: 940 GVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNA 999 Query: 949 ---FSQIDCRKVANLFYIRL 965 + A + Y + Sbjct: 1000 HTWMKKGSTASPAGVLYFHI 1019 >gi|256965487|ref|ZP_05569658.1| exonuclease RexB [Enterococcus faecalis HIP11704] gi|256955983|gb|EEU72615.1| exonuclease RexB [Enterococcus faecalis HIP11704] Length = 1196 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|325687713|gb|EGD29734.1| exonuclease RexB [Streptococcus sanguinis SK72] Length = 1093 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 120/923 (13%), Positives = 257/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + + I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALAIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + G + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAGAEDAFGRISKV 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ ++ TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSEQAVEVSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQFQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPISLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQSETLQALYPQDQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 D G H I +++++ + + + ++ FE R L Sbjct: 777 DARSHGIFLHRIFEKVLQEDSSADFDRRLAQAMEETSRETEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972 >gi|209559148|ref|YP_002285620.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes NZ131] gi|251764625|sp|B5XKR3|ADDB_STRPZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|209540349|gb|ACI60925.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes NZ131] Length = 1071 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 132/986 (13%), Positives = 271/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740 A T+ L+ + N S +L+ L+ G Y Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769 ++ +Q + Sbjct: 673 LLSQIIAINRQDLIEMADQDKMFWTGVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 770 ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|256958609|ref|ZP_05562780.1| exonuclease RexB [Enterococcus faecalis DS5] gi|257078037|ref|ZP_05572398.1| exonuclease RexB [Enterococcus faecalis JH1] gi|294780983|ref|ZP_06746335.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis PC1.1] gi|307268774|ref|ZP_07550142.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX4248] gi|256949105|gb|EEU65737.1| exonuclease RexB [Enterococcus faecalis DS5] gi|256986067|gb|EEU73369.1| exonuclease RexB [Enterococcus faecalis JH1] gi|294451929|gb|EFG20379.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis PC1.1] gi|306514902|gb|EFM83449.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX4248] gi|315031590|gb|EFT43522.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0017] gi|315034968|gb|EFT46900.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0027] Length = 1196 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYNFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + ++ L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|145596261|ref|YP_001160558.1| UvrD/REP helicase [Salinispora tropica CNB-440] gi|145305598|gb|ABP56180.1| UvrD/REP helicase [Salinispora tropica CNB-440] Length = 1144 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 111/1088 (10%), Positives = 236/1088 (21%), Gaps = 155/1088 (14%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---TILPIIKSLGDV 84 TLVE + + + ++R LR P++++ Sbjct: 64 ATLVEAVAARVAEGVDPERILVLTFSRRQATGLRQRIEARIAGGGHRVLREPLVRTFPAY 123 Query: 85 VEEKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 ++ ++ L + L+ + + D P Sbjct: 124 AFGLLRRAAAERGEPSPRLLTGPEQDLIIRELLDLVGEE-----PDADPVGWPEDLRPAL 178 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 A L D++ +L L W AA FL+ R V Sbjct: 179 RTRAFAAQLRDLLMRAAERGVGPVELARLGERLGRADWPAAARFLREYVAVLALRDVGNR 238 Query: 204 ---ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A P + + + + + + PA L++TVA Sbjct: 239 GSIAYDPAELVRSATGMLLDDPALLAAERRRLAHVYVDEYADTDPAQQELLATVAGGGKA 298 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 +VL D T + ++ + + Sbjct: 299 LVVLA--DPDSSTYAFRGADPGGVVTFPHRFRTASGAPAAQVVFTTSYRAGPRLLAAHAR 356 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 ++ + G + + EA +A Sbjct: 357 LARRLRG-------------------PATHRRTRALPAAAAGAAEVRTFRSAASEAAWLA 397 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSIL 430 ALR + + + + R L R + +PL + L Sbjct: 398 HALRAAHLLDGVPWSEMAVLVRSTGRALPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPL 457 Query: 431 TSLLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSR---------------------- 466 LL D A L+ PL + R Sbjct: 458 LLLLRCALAPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRVMALAAGDRRPSGELIVE 517 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--- 523 A +A + + + L+ T LA L Sbjct: 518 ALRDPAELAGIDRRWAEPAQTVAGLLAVTRETAARPGATAEEVLWAVWRVSGLAELWSAA 577 Query: 524 -------------------------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 +D ++ + + + + Sbjct: 578 LARTPAAAGEGEVARRRRAEAADRDLDAVMVLFDAAARFTDRLPGARVEVFLDHVLGQDL 637 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII-TRLIDGET 617 + L K L + + + ++ + + Sbjct: 638 PADTLAPTADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLVDVL 697 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + ++G + L L + + +S V + + Sbjct: 698 AGRSAGEGRRVSVVGQTSALLDEERRLFHVAVT------RARRRLMVSAVASAAVGGDDH 751 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------TDFFDNL 731 ++ + H+ +A+ S G + Sbjct: 752 DEQPSRFLHELGVADPPPGGGGGPDGDARPGEGAGSDGDAGPGEDAGSDDARTGALPLSR 811 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYK---------------------------------RPK 758 R +L P + Sbjct: 812 PPRALTLASLVAELRTAVTDPSAPVLRRRAAAAELARLAAEGVAGAHPDDWWGLRPLSDE 871 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 + +P + S ++ + R G L H Sbjct: 872 RPLVADGEPVRVTPSGMESALRCSLRWLLERHGGGAPASA------AQGVGNLVHAA--- 922 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + L+ + E + + + L + Sbjct: 923 --AMLAENASSDRRALLDYVAARFDAIELAARWMVGPEQARAEAMVDKLLRWLATNPRRL 980 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 I ++ + L G DR+++ G + + D KTG + A PQL Sbjct: 981 LAIEHEFAVRLDDSRHPVDLVGRVDRLEVDSDGRLVVVDLKTGKSTAVTAADLTEHPQLG 1040 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 AA++AG+F++ + ++L K + + + + L+ Sbjct: 1041 AYQAAVEAGAFAEFG-TESGGASLVQLGTGAK--EAREQAQPPAGEGPAAGWATALVRRT 1097 Query: 999 TLLQNGEQ 1006 Sbjct: 1098 AETMAATT 1105 >gi|293554029|ref|ZP_06674629.1| exonuclease RexB [Enterococcus faecium E1039] gi|291601811|gb|EFF32063.1| exonuclease RexB [Enterococcus faecium E1039] Length = 1175 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 112/929 (12%), Positives = 247/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFTRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQIQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLRLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + ++ ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022 >gi|255973165|ref|ZP_05423751.1| exonuclease RexB [Enterococcus faecalis T1] gi|255964183|gb|EET96659.1| exonuclease RexB [Enterococcus faecalis T1] Length = 1186 Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 256/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 81 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 141 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 196 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 253 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 254 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 298 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 299 PPLSAADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 359 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 418 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 419 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 478 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 479 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 539 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 598 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + + L T S+++ S + + + F+ + Sbjct: 658 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 718 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 777 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 778 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 836 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 896 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 954 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042 >gi|257086467|ref|ZP_05580828.1| exonuclease RexB [Enterococcus faecalis D6] gi|256994497|gb|EEU81799.1| exonuclease RexB [Enterococcus faecalis D6] gi|315028069|gb|EFT40001.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX2137] Length = 1196 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQMENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEVLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|225026994|ref|ZP_03716186.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353] gi|224955679|gb|EEG36888.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353] Length = 1134 Score = 160 bits (405), Expect = 1e-36, Method: Composition-based stats. Identities = 119/974 (12%), Positives = 251/974 (25%), Gaps = 149/974 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA---DFLKIASKYWTERLVELN 203 L ++ WE + + + L +++ + + Sbjct: 117 GFIDELKSMLMEFIGYGVTWEQVEE--VSEKLGENKALSNKCKELGRIYEHFDKAIE--G 172 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + + R A+ T G G P + + V + Sbjct: 173 RFMVTEQILDVAREFAKEAPMLTNAVFYFDGFAGFTPVQLAFLKELLKVAGQINVTITIP 232 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 +P + E + L L + E+V +L + + Sbjct: 233 EFVPGQ--RGMPEDLFTSSKKTGDA-------LLMLCQENMQEVEEVVKLDTPVSPRFIN 283 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + ++ + + K + + N EA + + + Sbjct: 284 NPELAFLEKNLFQNSRKI----------YSKKIERIHMTVCHNPDGEADYVMHKIEQLVR 333 Query: 384 ENK---KKSALITADRNLAR----RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + A+++ D R L I + +S + SL + Sbjct: 334 QKGYRYRDFAVLSGDVADYASAFKRKAAIL---NIPVFEDTKKKVSYHSGVEAVRSLFHL 390 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++ +K ++ + V LK+ Sbjct: 391 AQMEYSYESVFRYLKSGMSNLIDEDADYLENYVLYAGVRGYSMWKKPFYRRLKN------ 444 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + L E+ E + + T LS + Sbjct: 445 ----KDEAAIKALLLLQEKFMEETENFCSVMRDKEASVRDKIEVLYHTMVKLSFEEKL-- 498 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + + + + L SL KI+ K E +I+ +D Sbjct: 499 --KNQAQKAEENSDFVKAAEYRQLYDLLLSLMDKIVMIFGEEKMAVKELAEIVDAGLDAL 556 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---N 673 + + + +RL L + G+N+G P N LS + L Sbjct: 557 GLGVVPLTMDQVVLGDLKRTRLHEVKVLFITGMNDGKIPPNIEDRGLLSDEEKEVLKNCG 616 Query: 674 LKTAEKYIGQA---AHDFEMANGTR--HLIYTRS-LRENNIPTIAS-------------- 713 + ++ + Q+ MA L ++ S + S Sbjct: 617 ISLSQSLLEQSMEDEFYMYMAFAKPTDELYFSYSVTDSDGSALRPSLLQKNISQLFPKLK 676 Query: 714 -------------------RWLQRLLVLGGTDFFDNLKKRGQCYLD--WTRKLD------ 746 +L + T+ K R L W + + Sbjct: 677 RKQYPEEERRYYFNLEDSREFLIESFLQAKTEPEKVRKNRAFVMLAKYWLEQSEGRKELE 736 Query: 747 ------YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Q + L + + S + +++ PY + L+L + Sbjct: 737 KYGHWIENAYQEPELSEELLEQLYGKELSGSVTRLERFAACPYQYFCIYGLELRERE--E 794 Query: 801 KDPDRTDRGTLFHNIITEL----------IKKRINKNTPE-INHLMKQIIDSHFEKENLP 849 D G LFH + K ++ + I+ + +D + Sbjct: 795 YKIRPIDLGNLFHKALECFSRKVKESEYSWKNIPDEVQEQYISEALHTAMDENLSDVFQS 854 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPA---------KMAIESIG-IH 897 + +I ++ S E + ++ +E + Sbjct: 855 SSRNQYKIKTVERIMKRTIQVLRVHLKNSQFEPDRFELSFGKNKKLKEAEVPLEDGRKMF 914 Query: 898 LTGFADRID--LLKSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKA-----GS 948 L G DR+D + + DYK+G + E ++ QL + A + Sbjct: 915 LQGVIDRVDTCEDDDEILMKVIDYKSGMKKFELEDFYYGLEMQLVIYMNAAEEIYKENEQ 974 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL----IEIVTLLQNG 1004 A +FY +L D I ++ L L + +I++ L+ G Sbjct: 975 NPDNKPVVPAGIFYYQL-----QDPIIKADYAEESELLKNFRLSGMANSDADILSKLEEG 1029 Query: 1005 EQPFISHLRLSEKS 1018 F+S +KS Sbjct: 1030 SDGFVSMPIRLKKS 1043 >gi|328951962|ref|YP_004369296.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM 11109] gi|328452286|gb|AEB08115.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM 11109] Length = 895 Score = 160 bits (405), Expect = 1e-36, Method: Composition-based stats. Identities = 100/697 (14%), Positives = 198/697 (28%), Gaps = 68/697 (9%) Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINI-------- 413 I + R+E +A + D+ + + EL R + Sbjct: 225 ITLPDRRQEMDWVAAKVLELADQEQIPLHRLAVTAPNLTEYLPELRRIWRELLGPGMTPE 284 Query: 414 ----DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + S G L+ T L +A + P + E +A Sbjct: 285 GCWCNFSLGDCLAETQIFHAALLPLRFRTYGELREDLAAWLLSPY----YQEFSPQQAAI 340 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + R ++ +YD L+ + T + +S + A + Sbjct: 341 LQWDLIWRRSRIAYDWPALRRAASEADRTGLEPALLSRLDRIISCLPLDPAPAGI----- 395 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 WTK + + + L + Sbjct: 396 -----------------------WTKRLQAVWEQSGFPGRLSPLEERSYQHLQELLRDLT 432 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + I+ + + + + + + ILG LE R L+FD + GL Sbjct: 433 AL---EGSSELSGSTLIEWLNLGARQIDLPGEGTQEAGVQILGLLELRGLDFDAVFCMGL 489 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNI 708 N GV+P P L+ + + T + A + LI TR L + Sbjct: 490 NMGVFPPPPRPLPLLTASERVLVLGGTYQGQQQFAEQAYRNLQAVAPRLICTRPLVQQEE 549 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 S + + + P Sbjct: 550 EQTPSFLIDQTWRQETCSPLSRPHPAWLRSPAVRVVFQAPASGGAILNKELT--SVKLPS 607 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI---N 825 S S + + P Y +L L +P +RG+ H ++ ++ Sbjct: 608 EISLSALMTALACPCQFYFSVLLGLQELPEIDSGLPPPERGSALHQVLERFTRRFSQAIQ 667 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK-------ISHSFLEHEEKI-QSS 877 ++ + E+ D W+ + + +L+ E + ++ Sbjct: 668 ESDHWNEAAALNCLQIVMEEFQSWAKADPHWQAELERWLAPEGGVLREWLQQERQHYENG 727 Query: 878 IEKIFVNIPA-KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-P 935 + + P + + + G DRID K + + DYK+G+ PK+ ++ Sbjct: 728 WRWLVMEAPFAGLRLPDWPGSIRGRIDRIDWHKEQGLMLWDYKSGNVPKQRDLEEDRSQF 787 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK--KKYSADELSEKSLKN 993 QL A++ G + ++ A I LK + D L L Sbjct: 788 QLPGYLLAVQHGLIPTLPRQQ-ARAGIIGLKSSRQDHLRFEDYGLSAGDWRRLLSLKLAA 846 Query: 994 LIEIVTLLQNGE-QPFISHLRLSE-KSNIQSEYDHLA 1028 + ++ +Q G+ +P S + S + L Sbjct: 847 VAKVGKKVQQGDFRPDPSLPPPGKGNSCTYCPFHLLC 883 >gi|282908261|ref|ZP_06316092.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327926|gb|EFB58208.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus WW2703/97] Length = 865 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 91/744 (12%), Positives = 217/744 (29%), Gaps = 109/744 (14%) Query: 357 SDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRFGINI 413 + ++E+ REE IA + + + + + A++ D + A L + I Sbjct: 5 GHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPY 64 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 +I ++ ++ SL+ I + L+K + + + + LE Sbjct: 65 NIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSY--LKSAYLVDLLEN 122 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-KELAVLLVDHILQC-- 530 L +D + ++ + H R + E +L ++D IL Sbjct: 123 FVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEK 182 Query: 531 -ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 ++ T K + ++ + +T + L+ ++ L + Sbjct: 183 QMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNG-NHEKAEEIDQIWNGLIQILD 241 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ + ++++ ++ + + I +++ N + L G+ Sbjct: 242 DLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGM 301 Query: 650 NEGVWPKNTAKNPFLSRVMQS--------DLNLKTAEKYIGQAAHDFEMANGTR-HLIYT 700 N+G P+ + ++ + +L+ + + +A + + ++ ++ Sbjct: 302 NDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFS 361 Query: 701 RSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRG-------------------QCYLD 740 SL + S +L ++ L N+ + + Sbjct: 362 YSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRA 421 Query: 741 WTRKLDYTTKQPHYKRPKPFPPL-----------------------------EAQPRTYS 771 W + + S Sbjct: 422 WLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDNETVKLGETLSKDLYGKEINAS 481 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S + P+ YA LKL+ K + D G +FH+++ + ++ Sbjct: 482 VSRFEGYQQCPFKHYASHGLKLNER--TKYELQNFDLGDIFHSVLKYISERINGDFKQLD 539 Query: 832 NHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKI 881 ++Q+ + E+ I + L + S Sbjct: 540 LKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPK 599 Query: 882 FVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF--VDITDYKT--GD 922 + + I I++ G DRID K+ V+I DYK+ G Sbjct: 600 HFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGS 659 Query: 923 NP-KKETAQKLIDPQLSLEAAAL----KAGSFSQIDCRKVANLFYIRL-KQKFKIDCITN 976 + Q+ + + + I K L Y + + + K + Sbjct: 660 ATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDI--VKPGGLLYFHVHEPRIKFKSWAD 717 Query: 977 DKKKYSADELSEKSLKNLIEIVTL 1000 + +L +K L +V Sbjct: 718 IDEDKLEQDLIKKFK--LSGLVNA 739 >gi|139474038|ref|YP_001128754.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes str. Manfredo] gi|251764622|sp|A2RFA9|ADDB_STRPG RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|134272285|emb|CAM30538.1| putative ATP-dependent exonuclease subunit B [Streptococcus pyogenes str. Manfredo] Length = 1071 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 135/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S + Q+ Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRSTAPTLQLNQN- 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + + DYK+ N T + PQ Sbjct: 850 IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|261207736|ref|ZP_05922421.1| exonuclease RexB [Enterococcus faecium TC 6] gi|289565811|ref|ZP_06446253.1| exonuclease RexB [Enterococcus faecium D344SRF] gi|294614015|ref|ZP_06693945.1| exonuclease RexB [Enterococcus faecium E1636] gi|260078119|gb|EEW65825.1| exonuclease RexB [Enterococcus faecium TC 6] gi|289162354|gb|EFD10212.1| exonuclease RexB [Enterococcus faecium D344SRF] gi|291593122|gb|EFF24701.1| exonuclease RexB [Enterococcus faecium E1636] Length = 1175 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 113/929 (12%), Positives = 248/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + G Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANGFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + ++ ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAVVKPAGSYYLHV 1022 >gi|94990158|ref|YP_598258.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270] gi|251764620|sp|Q1JHM2|ADDB_STRPD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|94543666|gb|ABF33714.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270] Length = 1071 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 135/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K I+I G + L+S + N+ I+ ++ + K + Sbjct: 184 QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVII----GSYVSQKAYQKSFIKGNIYEA 239 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 S Q K + + + V + R + ++ D + Sbjct: 240 SLHFLQDLAQKYHIKPVFAISNQ---------VFKPAFSRLTQLFEATHDFSQVDWQLQK 290 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 +L + +++EE +A ++R L E + ++ ++ Sbjct: 291 ND----------LDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAMLEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|56808114|ref|ZP_00365903.1| COG3857: ATP-dependent nuclease, subunit B [Streptococcus pyogenes M49 591] Length = 1071 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 132/986 (13%), Positives = 270/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILISFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740 A T+ L+ + N S +L+ L+ G Y Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769 ++ +Q + Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 770 ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILIHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|229546209|ref|ZP_04434934.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis TX1322] gi|256852762|ref|ZP_05558132.1| exonuclease RexB [Enterococcus faecalis T8] gi|307291095|ref|ZP_07570980.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0411] gi|229308733|gb|EEN74720.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecalis TX1322] gi|256711221|gb|EEU26259.1| exonuclease RexB [Enterococcus faecalis T8] gi|306497749|gb|EFM67281.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0411] Length = 1196 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|256762120|ref|ZP_05502700.1| exonuclease RexB [Enterococcus faecalis T3] gi|256683371|gb|EEU23066.1| exonuclease RexB [Enterococcus faecalis T3] Length = 1186 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 257/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 81 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 140 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 141 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 195 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 196 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 253 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 254 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPALQELNDYWIQSQEHL 298 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 299 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 358 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 359 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYSDVLRFLRTELFMPMNQLA 418 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 419 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVTT 478 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 479 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 538 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 539 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 597 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 598 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 657 Query: 680 YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + ++ L T S+++ S + + + F+ + Sbjct: 658 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 717 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 718 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 777 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 778 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 835 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 836 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 895 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 896 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 953 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 954 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1013 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1014 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1042 >gi|257881060|ref|ZP_05660713.1| exonuclease RexB [Enterococcus faecium 1,231,502] gi|257889645|ref|ZP_05669298.1| exonuclease RexB [Enterococcus faecium 1,231,410] gi|257892415|ref|ZP_05672068.1| exonuclease RexB [Enterococcus faecium 1,231,408] gi|260559203|ref|ZP_05831389.1| exonuclease RexB [Enterococcus faecium C68] gi|293563137|ref|ZP_06677602.1| exonuclease RexB [Enterococcus faecium E1162] gi|294623301|ref|ZP_06702163.1| exonuclease RexB [Enterococcus faecium U0317] gi|314939882|ref|ZP_07847088.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133a04] gi|314943729|ref|ZP_07850468.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133C] gi|314949685|ref|ZP_07853003.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0082] gi|314953231|ref|ZP_07856170.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133A] gi|314993689|ref|ZP_07859037.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133B] gi|314997394|ref|ZP_07862345.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133a01] gi|257816718|gb|EEV44046.1| exonuclease RexB [Enterococcus faecium 1,231,502] gi|257826005|gb|EEV52631.1| exonuclease RexB [Enterococcus faecium 1,231,410] gi|257828794|gb|EEV55401.1| exonuclease RexB [Enterococcus faecium 1,231,408] gi|260074960|gb|EEW63276.1| exonuclease RexB [Enterococcus faecium C68] gi|291597269|gb|EFF28458.1| exonuclease RexB [Enterococcus faecium U0317] gi|291604915|gb|EFF34384.1| exonuclease RexB [Enterococcus faecium E1162] gi|313588529|gb|EFR67374.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133a01] gi|313591863|gb|EFR70708.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133B] gi|313594697|gb|EFR73542.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133A] gi|313597592|gb|EFR76437.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133C] gi|313640845|gb|EFS05425.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0133a04] gi|313643943|gb|EFS08523.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium TX0082] Length = 1175 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKIGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + + ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVTWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022 >gi|315150317|gb|EFT94333.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0012] Length = 1196 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|157150420|ref|YP_001450694.1| putative exonuclease RexB [Streptococcus gordonii str. Challis substr. CH1] gi|251764616|sp|A8AY34|ADDB_STRGC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|157075214|gb|ABV09897.1| putative exonuclease RexB [Streptococcus gordonii str. Challis substr. CH1] Length = 1093 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 112/923 (12%), Positives = 252/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVATALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIATFAQHILSGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFRDGNLYQASVDF--------LRKLAEDYQVKPDYIPY------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLFGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K + G+ ++ + + Sbjct: 382 LEDLLNLLKTG----------------------IYGDLTQEELDHFEQYLRFADIKGAVK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQ-EESHQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + + Y + + IL L + P Sbjct: 719 ISKELKTESLQPETLHALYPKDQPLRLSASALSEYFKNQYGYFIKYILGLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINH-LMKQIIDS-HFEKENLPPHIDIIWRHLFH 861 D G H I +++++ +++ + + + + FE + R L Sbjct: 777 DARSHGNFLHRIFEKVLQEDTSRDFDQRLEVAIDETMRETEFESLYNESSESLFTRQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDL-LKSGFV 913 + S + + + IE I P + + + + G DRID L G + Sbjct: 837 DTAKSTGQVLAQS-AGIETIGEETVFGNSKEPFLILEDGRAVSVRGKVDRIDRLLADGSL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+ + E ++ QL AA++ Q + R + Y+++ + Sbjct: 896 GVVDYKSSETKFSYEKFFNGLNSQLPTYLAAIQELQGQQ-EGRDLFGAMYLQMTE----- 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + ++ K + Sbjct: 950 PIVALKDTKELGDAVKEVAKTMQ 972 >gi|94992154|ref|YP_600253.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096] gi|251764618|sp|Q1JCJ9|ADDB_STRPB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|94545662|gb|ABF35709.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096] Length = 1071 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 136/983 (13%), Positives = 277/983 (28%), Gaps = 134/983 (13%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K I+I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 DI P + + + Sbjct: 401 SDIDR----------FEEYTQFADIKGFTKFS------------KPFTINSSRQYPLDFL 438 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + I+ + L + ++ + I K + +N+ +L EE Sbjct: 439 NEMRQDIVLPLQELFKSQKQLGASLIDKLILFLEK--IRLAENMQGLAQSQLEVEKNEEV 496 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 K + + + K + + +I + + + I + + Sbjct: 497 WKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQPHS 556 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFE 689 + GL + +PK + LS ++ +N ++ A A Sbjct: 557 KPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTALSLF 616 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT------------------------ 725 A T+ L+ + N S +L+ L+ G Sbjct: 617 NA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLS 675 Query: 726 --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PP 762 D + + + R L ++ + P Sbjct: 676 QIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCF 735 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + P S + + N+ Y + + +L L+ PD G H + L+K Sbjct: 736 PKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERLMKD 793 Query: 823 RINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + +S F++ + I S ++ +I+ Sbjct: 794 HTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQNIKV 852 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSL 939 I + + I + G DRID L G + I DYK+ N T + PQL Sbjct: 853 IDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQLVT 911 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 912 YLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----TYKG 964 Query: 1000 LLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 965 IFSEVEKEHLSTGAYQTKNALYS 987 >gi|94988279|ref|YP_596380.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429] gi|251764619|sp|Q1JMH6|ADDB_STRPC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|94541787|gb|ABF31836.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429] Length = 1071 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 136/983 (13%), Positives = 277/983 (28%), Gaps = 134/983 (13%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K I+I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 DI P + + + Sbjct: 401 SDIDR----------FEEYTQFADIKGFTKFS------------KPFTINSSRQYPLDFL 438 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + I+ + L + ++ + I K + +N+ +L EE Sbjct: 439 NEMRQDIVLPLQELFKSQKQLGASLIDKLILFLEK--IRLAENMQGLAQSQLEVEKNEEV 496 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 K + + + K + + +I + + + I + + Sbjct: 497 WKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQPHS 556 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFE 689 + GL + +PK + LS ++ +N ++ A A Sbjct: 557 KPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTALSLF 616 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT------------------------ 725 A T+ L+ + N S +L+ L+ G Sbjct: 617 NA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLS 675 Query: 726 --------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF---------------PP 762 D + + + R L ++ + P Sbjct: 676 QIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCF 735 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + P S + + N+ Y + + +L L+ PD G H + L+K Sbjct: 736 PKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERLMKD 793 Query: 823 RINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + +S F++ + I S ++ +I+ Sbjct: 794 HTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQNIKV 852 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSL 939 I + + I + G DRID L G + I DYK+ N T + PQL Sbjct: 853 IDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQLVT 911 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 912 YLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----TYKG 964 Query: 1000 LLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 965 IFSEVEKEHLSTGAYQTKNALYS 987 >gi|257418941|ref|ZP_05595935.1| exonuclease rexB [Enterococcus faecalis T11] gi|257160769|gb|EEU90729.1| exonuclease rexB [Enterococcus faecalis T11] Length = 1196 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTADWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|315030722|gb|EFT42654.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX4000] Length = 1196 Score = 160 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELKIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWRGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPYWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIGEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|94994075|ref|YP_602173.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750] gi|251764621|sp|Q1J7E5|ADDB_STRPF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|94547583|gb|ABF37629.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750] Length = 1071 Score = 160 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 132/986 (13%), Positives = 271/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRTLMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLD 740 A T+ L+ + N S +L+ L+ G Y Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKA 672 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------------------- 769 ++ +Q + Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 770 ----------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|89901668|ref|YP_524139.1| hypothetical protein Rfer_2897 [Rhodoferax ferrireducens T118] gi|89346405|gb|ABD70608.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 846 Score = 160 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 112/815 (13%), Positives = 208/815 (25%), Gaps = 93/815 (11%) Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 G P L + + L A W + + + Sbjct: 111 AGLAPYQNLLAARLMEAAWSLARLAASVAPTARAQWGLRLDSLLVSGLDAPVLALEAALA 170 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-----DILENKIP 350 L + + + S+ + E+ Sbjct: 171 RVALAWVASSSYPSDRLFAARPDLLVVLQGFQSEPLALALQHGLGERVVVLALQQEDTPT 230 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 VAL A + +EA A + L + AL+ DR L RRV+ L G Sbjct: 231 GAAAGADTVALHAAQDAEDEAQRAAACVLAHLAAGRSPVALVAQDRVLTRRVRAMLEERG 290 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + G LSTT ++ L SLL A + +K+ A + Sbjct: 291 VAVRDETGWTLSTTRAAAALMSLLRASAWDASTDGVLDWLKNAPAFDPQLVTQAEASWRR 350 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + R AV L D + + Sbjct: 351 GAVREWR------------------------------------------AVPLGDALQRP 368 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + L + ++ W LQ+ + Sbjct: 369 VQALRDSLQSG------RPLARWLVDLRAVLQSAGQWTGLMQDAAGQAVLQALRLHEGAH 422 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETV---KPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + E+ +++ ++ + P+ + IL + ++L Sbjct: 423 TEFADVAVSMSQSEFTAWVSQSLEAASFLPEHPENSAPGQVVILPLSQLLGRPLAAVVLP 482 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 G ++ P + + + L L + + ++ A H+ E Sbjct: 483 GCDDVRLPMSPEPTGPWTPAQRELLGLPARAQLAAASRAAWQYALQFPHVDVLWRQSEGG 542 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 +AS ++Q L LG + + + Sbjct: 543 EHLMASGFVQELQ-LGQIGAMAADPRPLRALTAKPGAMPSPRGDALAL------------ 589 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 S + + L PY +A R LKL + + D G H ++ + Sbjct: 590 TRLSSTAYEDLRRCPYRFFALRQLKLQESDELDTELGKRDFGNWLHTVLKLFHEALNESP 649 Query: 828 TPE---INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFV 883 P+ ++ + L + + + ++ +LE ++ + Sbjct: 650 APDFVGRLAMINAAAEQATLALGLSSSEFLPFAAAWPRVRAGYLEWLAGHEASGASFVAA 709 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEA 941 + A+ + L G DRID L+ G + DYKT D QL+ A Sbjct: 710 ERWRETALGH--LTLVGKIDRIDRLQDGSALVIDYKTEPRASTAQRIKDAPEDTQLAFYA 767 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A L Y+ + +K D L L I T + Sbjct: 768 ALL---------GDDTLAAAYVNVGEKDGTKTYEQSDVVALRDLL-------LAGIATDM 811 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREE 1036 K+ L R W Sbjct: 812 ARIADGAAMAAMGEGKACEFCAARGLCRKDFWDVA 846 >gi|32473646|ref|NP_866640.1| hypothetical protein RB5340 [Rhodopirellula baltica SH 1] gi|32444182|emb|CAD74179.1| conserved hypothetical protein [Rhodopirellula baltica SH 1] Length = 968 Score = 160 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 89/634 (14%), Positives = 199/634 (31%), Gaps = 70/634 (11%) Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINID 414 D LI A + ++ ++ L + + + + D + ++ G+ Sbjct: 263 LQDDQLIPAGDVSDQTAAVMETLAEFGQKYRVDQITIGVTDESQVEPIENRCDLLGVATH 322 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 G + T ++ ++ + + + ++A LV+H + + Sbjct: 323 RHLGHRVGQTAVGRLMHLIVTYLQRR-TWRSLAALVRH------------ADVTRYVSER 369 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 ++ + +L L+ + + E A + + Q ++PL Sbjct: 370 CPGHPESEKWLRELDQLLSSAFPRSVDEPLPAEV------QQTETADQIRTVLDQWLSPL 423 Query: 535 VTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLW----------FEEEGKT 583 + + + ++ + +L Q + + + ++ + Sbjct: 424 IKNTEPQPIRQWSETLQAILLELHGEAAQTLLPVDPDSMDESEETEPDASLSRTQQALRA 483 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFD 642 + L + + + + + V+ + S T + +LG L+ L + Sbjct: 484 IFRLLHRFADLNPSLDEPVEGSVAVEMLASRMSEVRWVDDPSPTEIELLGWLDLALDDSP 543 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YT 700 L++ GLN P+ + +PFL + ++S L+ ++ + H + +R + Sbjct: 544 ALVVCGLNHPFVPEAQSGDPFLPQSLRSTLHQSANDRRYARDVHAMQQLLTSRETVRFLV 603 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKRPK 758 S + PT SR L +L R + ++ + + Sbjct: 604 GSHSADGSPTPPSRLLAAATPEEAAKRVCDLLTIPRPKIVIEPVQPPPAVSVDSQVFFAP 663 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P P T S + + PY Y R +L+L + + G L H + E Sbjct: 664 PPPEPGRTIDTLSVTAFSAYLACPYRFYLRHVLRLRPLDDSPLELAANQFGDLVHGALEE 723 Query: 819 LIK------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 + + + + + HF + + + + Sbjct: 724 FGRGDYKNETDPKRIEEALIEELHRYAAKHFGDNT--STTVKLQVRQAQRRLKTVALRQA 781 Query: 873 KI-QSSIEKIFVN----------------IPAKMAIESIGIHLTGFADRIDLLKS-GFVD 914 + + + V P + ++ L G DRID G Sbjct: 782 ERAAAGWQIHAVEDAVDEKKIHPITGKPKKPTGITLDGQFTGLRGRFDRIDFHPETGRWA 841 Query: 915 ITDYKT-GDNPKKETAQKL-------IDPQLSLE 940 I DYKT G P+K+ +KL +D QL L Sbjct: 842 ILDYKTHGHKPEKKHLKKLPDGSTQWVDLQLPLY 875 >gi|19745860|ref|NP_606996.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS8232] gi|81632924|sp|Q8P1J3|ADDB_STRP8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|19748010|gb|AAL97495.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes MGAS8232] Length = 1071 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 134/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + + DYK+ N T + PQ Sbjct: 850 IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|315168380|gb|EFU12397.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX1341] Length = 1196 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|253580236|ref|ZP_04857502.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848329|gb|EES76293.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1124 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 110/1017 (10%), Positives = 266/1017 (26%), Gaps = 138/1017 (13%) Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 +E+ K + I S + F + + + + + L +++ R +L Sbjct: 50 LVEMHPGKGILNIDILSFERLAYRVFEETGGDNR---KVLEDTGKSMVLQKMVQQHRKEL 106 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWL 182 + + L + ++ + + E+L +K + Sbjct: 107 AYLGSQMNKPGYL-------------DEVKSLVSEFMQYDIREENLAEMKEKAQNQPLLE 153 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 + + I + + E L + ++ + K + G TG P Sbjct: 154 MKLKDVGILYQSFREFLK--GHYMTGEEVMDVLLKQLPFSEKLKGAEFLFDGFTGFTPIQ 211 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ++ + + V +D + + + + +++ Sbjct: 212 VNVLRELLVIADRISVTVTMD---------EREDAFSPGKPYQLFFMS------KQMIRA 256 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L D++ + R F +I + + ++ + Sbjct: 257 LAGLTRDLEDPVYLKPSGQSR-------FAQAPALQFLEKNIFRYRKGVYAEEQQEIKIF 309 Query: 363 EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAG 418 A + EE A + + + A+IT + R+ + I I Sbjct: 310 TAPSPLEEMREAARRMSELVRTCGYRYGEIAVITGNLEEYARLAAQVFEEADIPYFIDEK 369 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + L + + + + ++ ++ +++ + LE L Sbjct: 370 HSVMMNPFVEYLRAAMEMAVQGFPYESVFRYLRCGMSEVT------REQADKLENYVLAL 423 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 Y K + + R + + + +EE +ELA Sbjct: 424 GIRGYKKWSEKWVRVYRGMGAEKIQELNEIREIFAEEVRELAQGFGSGKKTVEEYCRILY 483 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + + + K + + + L K++E Sbjct: 484 EFIQKSDVWQKLKRQERKFKES--------GDKAMEKEYNQIYGIVMDLLDKMVEILGEE 535 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 N E+ ++ + V + + SRL L G+NEG PK+T Sbjct: 536 TVNRQEFRQLLESGLSQAKVALIPPSIDQVMVGDMERSRLKEIKALFFVGVNEGNIPKST 595 Query: 659 AKNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPT 710 LS + + ++ + + LI + S Sbjct: 596 QTGGILSELDRDFFQEQGVELAPGPKELMNMQRFYLYLNMTKPGEKLILSYSDTNAKGEG 655 Query: 711 IASRWL------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 I+ +L R ++ L + + T K+ Sbjct: 656 ISPAYLIGSICSLYLKLEIEGGAGVRPHKNSINNYCYPENPEAGIDLFLEKLVQETEKEH 715 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 R + YS+ + + + G + Sbjct: 716 EDIREQADETDAMFGELYSWYLRNPEYRSRVQKLVQSAFAGKPEDIISQSVAKALYGEVS 775 Query: 813 HNI---ITELIK-------KRINKNTPEIN-------------HLMKQIIDSHFEKENLP 849 + + K T + ++ + ++ Sbjct: 776 PYSATRLERFAACAFAHFLQYGMKLTERVEYEFKPMDMGNVMHEALESFAEEVRKRGMKW 835 Query: 850 PHIDIIWR-HLFHKISHSFLEH----------------EEKIQ-SSIEKIFVNIPAK-MA 890 + R + + + + E + + + Sbjct: 836 TELTEQERNEIADRCLDNIVADYGNTVLKSSARNEYMIERTRRILRRTVWALQKQLEQGE 895 Query: 891 IESIGIHLT---GFADRIDLLKSG---FVDITDYKTGDNPKKETA--QKLIDPQLSLEAA 942 + G +T G DR+D+++ +V + DYKTG+ + + QL + Sbjct: 896 FQPEGFEVTFGGGRIDRVDIMEDQNKVYVKVIDYKTGNT-SFDLVYLYHGLQLQLMIYLD 954 Query: 943 ALKAGSFSQIDCRK--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + ++ A +FY +K + I D + SA + E + L++ Sbjct: 955 GALRVEQKKYPDKEIIPAGVFYYNIKDPMIQEKIDADVEAVSAGLMKELKMNGLVQA 1011 >gi|307273803|ref|ZP_07555025.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0855] gi|306509488|gb|EFM78536.1| putative ATP-dependent nuclease subunit B [Enterococcus faecalis TX0855] Length = 1196 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 115/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMREGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTTDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQLA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGFGGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAH--DFEMANGTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + ++ L T S+++ S + + + F+ + Sbjct: 668 KIAQEPYVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G DRID L + DYK+ A + Q+ + + Sbjct: 964 VRGKIDRIDQLVTPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDAVQLVG 1023 Query: 954 C-RKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|257878156|ref|ZP_05657809.1| exonuclease RexB [Enterococcus faecium 1,230,933] gi|257812384|gb|EEV41142.1| exonuclease RexB [Enterococcus faecium 1,230,933] Length = 1077 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 24 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 83 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 84 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 137 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 138 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 185 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 186 -------TELQLLQTMWEETSSQKKAAVHKIGGQEHLHLWEAENPTEEVRQLAVEIRRLV 238 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 239 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 298 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 299 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 358 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + Sbjct: 359 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 418 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 419 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 477 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 478 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 537 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 538 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 597 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 598 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 657 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 658 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 717 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 718 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDAQRRDFTEKVLQE 775 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + + ++ + + + I Sbjct: 776 VFGELRFEILDSSARMNYIRYQLGQTIQKVTWALQKQSKNTGMHPLQTEILFGQIAGAKG 835 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 836 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 895 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 896 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 924 >gi|116618576|ref|YP_818947.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271224|sp|Q03W48|ADDB_LEUMM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116097423|gb|ABJ62574.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1159 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 109/1005 (10%), Positives = 279/1005 (27%), Gaps = 158/1005 (15%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS---------------PANAIWLAKNL 152 ++ L RL PD D+ + L + +S L Sbjct: 72 QVYSLTRLAWALMKNTPDRQPDIVEPTGLFMIVSNILREQSDNLPVFSRMQTKSGFVSAL 131 Query: 153 ADIIDIIETEEKKWEDLHALKNEK-----YGMWWLLAADFLKIASKYWTERLVELNASSP 207 + + E+L + + L I + + R+ E + Sbjct: 132 VAQLVELRASNVTPENLLEVLEKSADNIFLRQTLNAKLHDLAIVADDFNARMGENQITGQ 191 Query: 208 VGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + A A+ L + G G A +++ + + + G D Sbjct: 192 -----ETLIAFAKQLADLKLSNVAFYFDGFNGFTSAEMMVVNQLITTYPVTMGILG-DPE 245 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 T ++ L I ++ ++ R Sbjct: 246 KMGQQREGDVFFKPMTT-----------------VEQLSITARTAQQEVAITAATKMR-- 286 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + E + + + + A+N E +A +R SL ++ Sbjct: 287 ---PLSRTAQQVLGAWACLGEYRNFTGSRDEVHLNVFAAENPITEIKEVARRIRRSLVDD 343 Query: 386 K----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + +++ D ++ +++F + + + + ++ +L Sbjct: 344 PTLHLRDIIILSRDLTPYQAHIEAVMSQFELPYFLDMDVNMMNHPLVELILNL--LAPNK 401 Query: 441 NDFMAIATLVKHPLAKFGFP-----EKYLSRAKNALELVALRGNKNSYDIMDL-KSLVLD 494 + + ++K L + F + ++ D + L Sbjct: 402 FQYQTMLAILKTGLLRPTFENKIVSHDEFFDIVSHMDNYLYAYRPYESRWRDFSRPFKLF 461 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SISDW 553 ++ ++T + + + L I++ L + ++ + W Sbjct: 462 QVTRDDDDTEISEDEKVNN-----RLEYLRHFIVEAFDELDDGFAMAKNLRQSVTHLVLW 516 Query: 554 TK---LTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + +T L+ + + EE + L+ +++E + + + Sbjct: 517 LQKYHVTDALLEQRDDFIAQGNLSRSQQSEEVWQMLTKTLDEMVEIDGERSVSLTDIVTT 576 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + + G L I + + L G P ++ Sbjct: 577 LQAGLSGAKFSGIPNNLDQLMISEAGIVQNTQYKQLYFIGGTRQNLPAQVKNAALINDAE 636 Query: 669 QS------------DLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIP-TIAS 713 +S TA++ + + F + + + + + E + S Sbjct: 637 RSIVQPALQSGTNPRYLQNTAQQQMAEENLLFYGSLMSSIGSITLSYPILEPSGQLAEMS 696 Query: 714 RWLQRLLV--LGGTDFFDNLKKRGQCYLDW-----TRKLDYTTKQPHY------------ 754 + +RL+ + ++ L L K Sbjct: 697 PFFKRLVDTFNSEVEVIGSIPSSAASLLKQYVGTARATLSDLVKILPVYGQTAAFKAVQN 756 Query: 755 ----------KRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARR 789 +R P + S S+++ ++P+A + + Sbjct: 757 VISNTMQDRLERVLSAPNYQNNTTKLKPEFISALFGERLNVSISQLESYYSNPFAYFLQY 816 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEIN-HLMKQIIDSHFEKE 846 LKL + + GTL+H + ++ + NK+ +I ++ ++ H + + Sbjct: 817 GLKLQER--ATNELNVAQTGTLYHAVFENVLHELIVKNKSLRDITGDELRALVRQHMQSQ 874 Query: 847 NLPPHIDIIW---RHL-----FHKISHSFLEHE--EKIQSSIEKIFVNIPAKM---AIES 893 P +I+ + ++ + + + +++ + V ++ Sbjct: 875 LALPAFEILNDSGKMRATTNYLTRVCETLVLNLQAAARENTSKPEAVEQLFGFSKESLPP 934 Query: 894 IGI---HLTGFADRID-LLKSGFV-DITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAG 947 + + G DR D +G I DYK+ G A + QL A + Sbjct: 935 LSFARMQVRGKLDRFDKQDVNGEFGTIIDYKSNGKTFNWGQAYDGLQMQLLTYWDAAQQS 994 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + ++ + F+ ++ + D +L ++ K Sbjct: 995 A-EKLGVAAIGGAFFAKISPEKTKITDKTDLNALFTGKLIPETFK 1038 >gi|332366979|gb|EGJ44719.1| exonuclease RexB [Streptococcus sanguinis SK1059] Length = 1093 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 118/923 (12%), Positives = 256/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L E + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + + I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDHYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLAQEELDHFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMSPLQDFFKSRSQTASGLLAKFTDFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + ++ EE K S + + + + K +++ +I + + Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIVQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRL----------- 719 Q A + T+ LI + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELILSAPALVNEVEDSMSTYLLELTVAPLSLPIIV 658 Query: 720 ------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK------ 755 ++ + + + W + K+ + Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 756 ----------RPKPFPPLEAQPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 +P+ L + + S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPREQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAI-------ESIGIHLTGFADRIDLL-KSGFV 913 + + S IE I A + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGTASKPFLILENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + + D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYKEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972 >gi|125718262|ref|YP_001035395.1| second subunit of major exonuclease [Streptococcus sanguinis SK36] gi|251764628|sp|A3CNU0|ADDB_STRSV RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|125498179|gb|ABN44845.1| Second subunit of major exonuclease, putative [Streptococcus sanguinis SK36] Length = 1093 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 121/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E+ + + S + + N++EE +A ++R + E Sbjct: 262 EAEDAFGRISKILESRYDFSESTVSLSESDRSQLQIWATMNQKEELEYVAKSIRQRVHEG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPH 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + S IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVSQSMKPLQ 972 >gi|116621024|ref|YP_823180.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116224186|gb|ABJ82895.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 897 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 99/849 (11%), Positives = 256/849 (30%), Gaps = 81/849 (9%) Query: 213 ALMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIVLP 260 L+ A + + + IA + +ARL + + P G L Sbjct: 84 LLVEQAARRVARPEFERVTQFHGFCASLAKTIAEFASAGCDSARLAANLPEVPLGGAFLA 143 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLDIKREDVKRLGNVSNE 319 + + + +T++ +A LD + + + Sbjct: 144 VYEEVDRELRRRGLALRGRILTAAAERIEAGGLPGIATIWLDGFHALPDPELSVIAALGK 203 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 ++ + ++ L T + + + +ALI+A E IA + Sbjct: 204 HADLTLTLDEAELGEATLARLGALDFSEEQVRGTRTRNALALIKAPGIEREVEEIARRIL 263 Query: 380 MSLD-ENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 ++ ++ +I + + L RFGI L L ++A+ Sbjct: 264 RQVEGRPFREIGVIVRAPEIYAPILRATLDRFGIPARFYFDEKLERHPVIRFLAGAMDAM 323 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + A +++ ++ +R + +L+SL++D Sbjct: 324 LGGWEHGATLAVLR-------LAPRFADFGVMDRFDFDVRERIPRSGLGELRSLLIDE-- 374 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + A L+ I + L ++ + + + + Sbjct: 375 ---------------DGQPRPYAERLLHKIDS-LAALEEWRALELAPRDWAARFATLREI 418 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG--SCIKANAIEWIDIITRLIDG 615 + H + L ++ + ++ Sbjct: 419 FKPARPADEITHELALQYRSQAAVLDLFDEALDEAAQALHGIRHLPLEDYWRAVKSILRL 478 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-- 673 + ++ + + + + ++ E+R + + G+ E +PK ++PF + LN Sbjct: 479 KPLRLEDGRRNVVHVMSAHEARQWVLPVVFVCGMVEKQFPKFHQQDPFFGDAARCRLNGS 538 Query: 674 ---LKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPT-IASRWLQRLLVLGGTDF 727 ++TA ++ + F+ A + + + S +L+ L + Sbjct: 539 GIRVRTAAEFEREERMLFDAAITRATMLATLSYPEFDGRGERNLPSIYLEDLDLPAEDAV 598 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 R + + + + + S + ++ + P+ + Sbjct: 599 AVRPAPRARTGDS---------APVEIRNAQLLEYMRHRTAQLSPTALETFLQCPFQYFT 649 Query: 788 RRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 +R L+L ++ D +G + H ++ E + ++ L +++ + +++ Sbjct: 650 QRFLRLKTAPDRPEQRLDFLTQGNVVHAVLAEWWLE-----PQDLAALFERVFAAQLKEK 704 Query: 847 NLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 +PP R+ F E+ + + ++ + + G DR+ Sbjct: 705 CIPPGYHTERLRNAMLDDLRRF-TSEDPWPKIAFRSQIETKFCFPLDD-TVEINGRIDRL 762 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 D G + DYK + + K Q L A + A ++Y+ Sbjct: 763 DTAPDGRTFVIDYKYSAAQRVKDKLKDASLLQAPLYMLAAQH------LNLDAAGMYYVG 816 Query: 965 LKQKFKI---DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +K + + + + + + +EIV +++G +S Sbjct: 817 VKGGIEYAGWSDHPLLESLGVPENWFDITRQRTLEIVRQIRSGRVEVHP---ADRESCRF 873 Query: 1022 SEYDHLARV 1030 + + RV Sbjct: 874 CDSKDICRV 882 >gi|227551327|ref|ZP_03981376.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecium TX1330] gi|257887558|ref|ZP_05667211.1| exonuclease RexB [Enterococcus faecium 1,141,733] gi|257896052|ref|ZP_05675705.1| exonuclease RexB [Enterococcus faecium Com12] gi|293378776|ref|ZP_06624933.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium PC4.1] gi|227179538|gb|EEI60510.1| ATP-dependent deoxyribonuclease, subunit B [Enterococcus faecium TX1330] gi|257823612|gb|EEV50544.1| exonuclease RexB [Enterococcus faecium 1,141,733] gi|257832617|gb|EEV59038.1| exonuclease RexB [Enterococcus faecium Com12] gi|292642569|gb|EFF60722.1| putative ATP-dependent nuclease subunit B [Enterococcus faecium PC4.1] Length = 1175 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 118/965 (12%), Positives = 245/965 (25%), Gaps = 150/965 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + L +++ +L ++ + L ++ + T + EDL Sbjct: 99 MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRTGNIQPEDL 145 Query: 170 HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L + L LK+ + L E S+ + A ++ Sbjct: 146 MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + I++G + +L+ + + L LD + +T Sbjct: 201 NVQFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 KL L + K V ++ L T + Sbjct: 255 -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTELQLLQTM---WEETSSQK 300 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403 + L EA+N EE +A+ +R + + + ++T + +L + Sbjct: 301 KATVRKLGEQEALHLWEAENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360 Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 I I + + SL I K L E Sbjct: 361 RPIFQEMAIPFYIDEEQMMENHPLIEWVNSLFALDRYSYRLSDIMRFFKTELFLSMETET 420 Query: 463 YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 L K + + +Y + L E+ Sbjct: 421 ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQYLEEQ 480 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572 + L + + KT + + S + + + + Sbjct: 481 SNTIRRLFQKSVPAFFKKIKKSKTGQAAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 E+ L L + + + + +IIT ++ + + I Sbjct: 541 AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684 R GLN+ V+P LS + LN + Sbjct: 600 LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659 Query: 685 ---AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 +GT L + + + + S +L+R+ + D Sbjct: 660 EPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719 Query: 741 ----------------WTRKLDYTTKQP-------------------------------H 753 + LD P Sbjct: 720 CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779 Query: 754 YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P+ + S S ++ N Y + + LKL G + Sbjct: 780 VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837 Query: 813 HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861 H + K +N + ++++ F + E L + + R+ Sbjct: 838 HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897 Query: 862 KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906 + ++ ++ + + + I + + +H+ G DRID Sbjct: 898 QTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957 Query: 907 LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960 + + + DYK +G + A + QL A + A + K A Sbjct: 958 VASEQEDTWLSVIDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017 Query: 961 FYIRL 965 +Y+ + Sbjct: 1018 YYLHV 1022 >gi|227431966|ref|ZP_03913986.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352251|gb|EEJ42457.1| ATP-dependent nuclease, subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1159 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 107/1005 (10%), Positives = 278/1005 (27%), Gaps = 158/1005 (15%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS---------------PANAIWLAKNL 152 ++ L RL PD D+ + L + +S L Sbjct: 72 QVYSLTRLAWALMKNTPDRQPDIVEPTGLFMIVSNILREQSDNLPVFSRMQTKSGFVSAL 131 Query: 153 ADIIDIIETEEKKWEDLHALKNEK-----YGMWWLLAADFLKIASKYWTERLVELNASSP 207 + + E+L + + L I + + R+ E + Sbjct: 132 VAQLVELRASNVTPENLLEILEKSADNIFLRQTLNAKLHDLAIVADDFNARMGENQITGQ 191 Query: 208 VGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + A A+ L + G G A +++ + + G Sbjct: 192 -----ETLIAFAKQLADLKLSNVAFYFDGFNGFTSAEMMVVNQLITTYPVTMGFLGAPEK 246 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + ++ L I ++ ++ R Sbjct: 247 MGQQ------------------REGDVFFKPMTTVEQLSITARTAQQEVAITAATKMR-- 286 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + E + + + + A+N E +A +R SL ++ Sbjct: 287 ---PLSRTAQQVLGAWACLGEYRNFTGSRDEVHLNVFVAENPITEIKEVARRIRRSLVDD 343 Query: 386 K----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + +++ D ++ +++F + + + + ++ +L Sbjct: 344 PTLHLRDIIILSRDLTPYQAHIEAVMSQFELPYFLDMDVNMMNHPLVELILNL--LAPNK 401 Query: 441 NDFMAIATLVKHPLAKFGFP-----EKYLSRAKNALELVALRGNKNSYDIMDL-KSLVLD 494 + + ++K L + F + ++ D + L Sbjct: 402 FQYQTMLAILKTGLLRPTFENKIVSHDEFFDIVSHMDNYLYAYRSYESRWRDFSRPFKLF 461 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL-SISDW 553 ++ ++T + + + L I++ L + ++ + W Sbjct: 462 QVTRDDDDTEISEDEKVNN-----RLEYLRHFIVEAFDELDDGFAMAKNLRQSVTHLVLW 516 Query: 554 TK---LTVTCLQNVCLDEHRKL--PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + +T L+ + + EE + L+ +++E + + + Sbjct: 517 LQKYHVTDALLEQRDDFIAQGNLSRSQQSEEVWQMLTKTLDEMVEIDGERSVSLTDIVTT 576 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + + G L I + + L G P ++ Sbjct: 577 LQAGLSGAKFSGIPNNLDQLMISEAGIVQNTQYKQLYFIGGTRQNLPAQVKNAALINDAE 636 Query: 669 QS------------DLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIP-TIAS 713 +S TA++ + + F + + + + + E + S Sbjct: 637 RSLVQPALQSGTNPRYLQNTAQQQMAEENLLFYGSLMSSIGSITLSYPILEPSGQLAEMS 696 Query: 714 RWLQRLLV--LGGTDFFDNLKKRGQCYLDW-----TRKLDYTTKQPHY------------ 754 + +RL+ + ++ L L K Sbjct: 697 TFFKRLVDTFNSEVEVIGSIPSSAASLLKQYVGTARATLSDLVKISPVYGQTAAFKAVQN 756 Query: 755 ----------KRPKPFPPLEAQPRTY---------------SFSEIKQLINDPYAVYARR 789 +R P + S S+++ ++P+A + + Sbjct: 757 VISNTMQDRLERVLSAPNYQNNTTKLKPEFISALFGERLNVSISQLESYYSNPFAYFLQY 816 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEIN-HLMKQIIDSHFEKE 846 LKL + + GTL+H + ++ + NK+ +I ++ ++ H + + Sbjct: 817 GLKLQER--ATNELNVAQTGTLYHAVFENVLHELIVKNKSLRDITGDELRALVRQHMQSQ 874 Query: 847 NLPPHIDIIW---RHL-----FHKISHSFLEHE--EKIQSSIEKIFVNIPAKM---AIES 893 P +I+ + ++ + + + +++ + V ++ Sbjct: 875 LALPAFEILNDSGKMRETTNYLTRVCETLVLNLQAAARENTSKPEAVEQLFGFSKESLPP 934 Query: 894 IGI---HLTGFADRID-LLKSGFV-DITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAG 947 + + G DR D +G I DYK+ G A + QL A + Sbjct: 935 LSFARMQVRGKLDRFDKQDVNGEFGTIIDYKSNGKTFNWGQAYDGLQMQLLTYWDAAQQS 994 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + ++ + F+ ++ + D +L ++ K Sbjct: 995 A-EKLGVAAIGGAFFAKISPEKTKITDKTDLNALFTGKLMPETFK 1038 >gi|71903239|ref|YP_280042.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180] gi|123640149|sp|Q48UB9|ADDB_STRPM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|71802334|gb|AAX71687.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180] Length = 1071 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 136/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K I+I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVIVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFFKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|327470753|gb|EGF16209.1| exonuclease RexB [Streptococcus sanguinis SK330] Length = 1093 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 120/923 (13%), Positives = 256/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFTQHILAGDADEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSVSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + S IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|257898679|ref|ZP_05678332.1| exonuclease RexB [Enterococcus faecium Com15] gi|257836591|gb|EEV61665.1| exonuclease RexB [Enterococcus faecium Com15] Length = 1175 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 118/965 (12%), Positives = 246/965 (25%), Gaps = 150/965 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + L +++ +L ++ + L ++ + + EDL Sbjct: 99 MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRIGNIQPEDL 145 Query: 170 HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L + L LK+ + L E S+ + A ++ Sbjct: 146 MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + I++G + +L+ + + L LD + +T Sbjct: 201 NVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 KL L + K V ++ + L T + Sbjct: 255 -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTALQLLQTM---WEETSSQK 300 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403 + L E++N EE +A+ +R + + + ++T + +L + Sbjct: 301 KATVRKLGEQEALHLWESENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360 Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 I I + + SL I K L E Sbjct: 361 RPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIMRFFKTELFLSMETET 420 Query: 463 YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 L K + + +Y + L E+ Sbjct: 421 ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQHLEEQ 480 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572 + L I + KT + + S + + + + Sbjct: 481 SNTIRRLFQKSIPAFFKKIKKSKTGQVAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 E+ L L + + + + +IIT ++ + + I Sbjct: 541 AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------- 684 R GLN+ V+P LS + LN + Sbjct: 600 LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659 Query: 685 ---AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 +GT L + + + + S +L+R+ + D Sbjct: 660 EPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719 Query: 741 ----------------WTRKLDYTTKQP-------------------------------H 753 + LD P Sbjct: 720 CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779 Query: 754 YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P+ + S S ++ N Y + + LKL G + Sbjct: 780 VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837 Query: 813 HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861 H + K +N + ++++ F + E L + + R+ Sbjct: 838 HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897 Query: 862 KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906 + ++ H++ + + + I + + +H+ G DRID Sbjct: 898 QTIQKVAWALHKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957 Query: 907 LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960 + + + DYK +G + A + QL A + A + K A Sbjct: 958 VASEQEDTWLSVIDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017 Query: 961 FYIRL 965 +Y+ + Sbjct: 1018 YYLHV 1022 >gi|78486039|ref|YP_391964.1| hypothetical protein Tcr_1698 [Thiomicrospira crunogena XCL-2] gi|78364325|gb|ABB42290.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thiomicrospira crunogena XCL-2] Length = 922 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 97/717 (13%), Positives = 214/717 (29%), Gaps = 105/717 (14%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKK-------SALITA-------------DRNLA 399 L A N ++E IA+ L + K A++ D L Sbjct: 211 RLYSALNPQDEIQQIALWCAEQLKQQVKTKPLHAIRIAVVAPNLAEVQQPLSWALDEVLY 270 Query: 400 RRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLLNAIFKL---NDFMAIATLVKHP 453 ++ L +IS G PL+ T L + ++ + P Sbjct: 271 QQFGQALPLKAARHTLYNISLGTPLAQTPIVKNALQTLAFAMMPEKTLAYADWSSWLTSP 330 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 ++ + + A N + K +RI K+ ++ Sbjct: 331 YTLGSLVQRQKADVRCRKLQWASFKWPNLLQAIQQKETEKNRIQLPKSLMQALEKAAQAP 390 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + + + +++K Sbjct: 391 RSTSLILSQFIAQAEKKLQEFRWAESSKERAL---------------------------S 423 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 ++ +++ L +L S + K W+ ++ R ++ +P+ + + I+GT Sbjct: 424 SIEMQQKETFLEALASFAQLNMTQAKQPVSVWLGLLKRYLNETVHQPQTQGIVPIQIMGT 483 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---HDFEM 690 LE+ FD+L + GL + WP+ NPFL +Q L ++ + Sbjct: 484 LEAGGQAFDSLWVMGLTDEAWPRPPNPNPFLPMALQRTYGLPRSDALRELNYARQVTLRL 543 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 A + ++++ + ++ + S L L L ++ + + W Sbjct: 544 AKSSPEIVWSYPQQLDDRVALPSPLLT-LAELKAAQIYEPVPYQSLATQLWA----QGEP 598 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTDRG 809 + + P + L + ++ G Sbjct: 599 LEWVADHQGPEVPLGTRVPGGSGILTAQNKCPLMAFMDYRLGARQQLEDVEEGMRSNHLG 658 Query: 810 TLFHNIITELIKK------RINKNTPEINHLMKQIIDSHFEKEN--LPPHIDIIWRHLFH 861 TL H ++ ++ + + ++ L+ Q+++ + H + ++ H Sbjct: 659 TLVHAVLEAFWRQVKTQHNLLEMDEKAVSELVSQLLEDAMAPLSSQFDAHYLSLEQNRIH 718 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-----LLKSGFVDIT 916 ++ +L E + + + +I I +L DR+D I Sbjct: 719 QLILDWLALERVR-PNFKVVAFEENHTPSIGGIEFNL--KIDRVDEVFDAETGELSRLIL 775 Query: 917 DYKTGDNPKKETAQKLI-DPQLSLEAAALKAG---------------------SFSQIDC 954 DYKTG + ++ I PQL++ A S + Sbjct: 776 DYKTGKASVGDLLKEPIEAPQLAVYLHAYHDVVAGLGYGILHSDDGVKFNTLISDEGVML 835 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISH 1011 + + L + +L K D + S + + + E+ T +Q G+ Sbjct: 836 KDRSQLIFAKLAAKEGS-----DFEGMSWSDFLQALRDEVSELATQIQQGQAEMTFR 887 >gi|69246356|ref|ZP_00603912.1| exonuclease RexB [Enterococcus faecium DO] gi|293569778|ref|ZP_06680865.1| exonuclease RexB [Enterococcus faecium E1071] gi|68195309|gb|EAN09760.1| exonuclease RexB [Enterococcus faecium DO] gi|291587526|gb|EFF19403.1| exonuclease RexB [Enterococcus faecium E1071] Length = 1175 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 112/929 (12%), Positives = 247/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + ++ ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022 >gi|293365448|ref|ZP_06612157.1| ATP-dependent exonuclease RexB [Streptococcus oralis ATCC 35037] gi|307703403|ref|ZP_07640345.1| ATP-dependent nuclease subunit B [Streptococcus oralis ATCC 35037] gi|291315816|gb|EFE56260.1| ATP-dependent exonuclease RexB [Streptococcus oralis ATCC 35037] gi|307622810|gb|EFO01805.1| ATP-dependent nuclease subunit B [Streptococcus oralis ATCC 35037] Length = 1091 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 115/948 (12%), Positives = 253/948 (26%), Gaps = 154/948 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMTFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLMELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 T + + DL +L +E + + Y + + L+ A Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSHLIEAIEN 178 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + ++ ++I G T R++ + G ++ I + Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIV--------------IGAYA 222 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + + + L L K + ++ SF Sbjct: 223 SKKAYISPFTEGNLYQASVEFLHHLGAK-------YQTPAQDRSQTHEKMDSFDKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394 + D E + +K ++ + ++EE +A ++R L + + K ++ Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335 Query: 395 DRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 D R ++ I + +S + S+L + L++ Sbjct: 336 DVASYRLSLKTIFDQYQIPFYLGRSESMSHHPLTQYAESILRLKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + + +S Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPSYQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + D E L +L + L + K + ++ L Sbjct: 434 KFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNAFLKNAALSKQMQELTATMETLE 493 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E K + + + + + +++ ++ + + T+ + Sbjct: 494 QERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSY 553 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686 + D + GL + PK L+ + LN T E A + Sbjct: 554 DLIAPMTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613 Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF-------------- 728 + M + LI + N + S +LQ L+ G + Sbjct: 614 RYTMLSLVNAARKQLILSAPSLLNENESKESAYLQELVGFGFSRLEKKIHQKSLSKDDMG 673 Query: 729 --DNLKKRGQCYLDWT--------------------RKLDYTTKQPHYKRPKP------- 759 +L Y +KLD P Sbjct: 674 SYHSLLSSLVSYHQQAGSSENEEDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733 Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S S + + + Y+ + R +L L + PD G H I Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 791 Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + +K + + + + FE + + ++ + H + Sbjct: 792 LERALKLPAENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850 Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925 +IE I + ++ +H+ G DRID L G + + DYK+ Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS----S 906 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 Q ++ QL AALK Y+ + + Sbjct: 907 LTQFQFPHFFNGLNSQLPTYLAALKREGEQDF-----FGAMYLEMAEP 949 >gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478] Length = 1066 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 103/998 (10%), Positives = 249/998 (24%), Gaps = 118/998 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------EEKFTADLLLSYN 98 V T++A +L + + + P + F LL Y Sbjct: 39 GQVLGLTFTRKAAGQLLRRVRSRLARLAGLEPGAAACESAGTPVVSTYHAFAGSLLRDYG 98 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII-- 156 L PV LL L + + +L + + A + L LA+ + Sbjct: 99 LLLPVEPDTSLLTETELWQLAFEVVNGYRGEL--RTQKTPAAVTAMVLRLWGQLAEHLVD 156 Query: 157 -DIIETEEKKWEDL-HALKNEKYGMWWLLAADFLKIAS------------KYWTERLVEL 202 + + E L H L Y + L++ + ER+ Sbjct: 157 TGQLRDTHVELERLVHTLPPGPYQRDRAPSQWLLRMLATQNERAELVPLLDALLERMRAE 216 Query: 203 NASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNG 255 + R A ++ +++ + + +S++ +G Sbjct: 217 KVMDFGLQMASAARLAASFPQVGRELRNQFRVVLLDEYQDTGHSQRVALSSLFGGGVDDG 276 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + D W + + +++ S + +L + Sbjct: 277 LALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPILELRTSWRNPPRALHLANA 336 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 +S E RS+ + PD L + + +D + Sbjct: 337 ISAEARRRSVAVRALRARPDAPPGTVRCALLPDVQAERDWIADH------------LQRR 384 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + +A++ A + L GI +++ L + + + ++L Sbjct: 385 YLRARADGVGPPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSIPEVADVVAMLR 444 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + A ++ P ++ + L+ +A N++S + + + Sbjct: 445 LVAEPTAGTAAMQVLTGP--RWRLGGRDLAALWRRALGLAGGPNESSPESIAAAAGPDSD 502 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + P S V L + L + + + D Sbjct: 503 TPCLADALSDPGPADCYSAAGYRRIVALAGELKLLRAQLGHCLPDLVAEVRRVLGVDCEA 562 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + L + S A + ++D+ + +G Sbjct: 563 RAKSAATAE-WSGTEHLDAFSDVVAKYAERATSSCTEVPAKASVAGLLAYLDVAAEVENG 621 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV-------- 667 + +L ++ L + + + L+ GV+P +++ +L+ Sbjct: 622 LPPAQPAVARDRVQVLTVHAAKGLEWQVVAVAHLSGGVFPSTASRSTWLTDPGELPPLLR 681 Query: 668 ----------------------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 + + + + + Sbjct: 682 GDRVSTGVLGIPVLDTSAVTNRKQLSDKISEHRRQLDQRRVDEERRLLYVGVTRAEDTLL 741 Query: 700 TRSLRENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + P S +L + + Sbjct: 742 VSGHQWGATGVKPCGPSEFLCEVKDIIDHSVAAGDPCGIVDQWAPAPAEGERNPLRDNAI 801 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVY-----------------ARRILKLDFIPHF 799 +P R +L+ + A A + + Sbjct: 802 QAVWPAEPLGARRADVERGARLVAEATAAEVIDAGVADTEGWVQDVDALLAERARAVQPP 861 Query: 800 KKDPDRT-------DRGTLFHNIITELIKKRINKNTPEIN-------HLMKQIIDSHFEK 845 ++ + G L + ++ P+ + + Sbjct: 862 ARELPGQLSVSGLVELGRDPAKARQRLAHRLPSRPDPQALLGNAFHSWVQRFYGAELLFD 921 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 P +++ ++ I V +P +M + + G D + Sbjct: 922 LGDLPGAADPEVSNAEELAKLRAAFTASPWAARTPIAVEVPFEMPVGDT--VVRGRIDAV 979 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 G V + D+KTG+ P+ ++ QL++ A Sbjct: 980 FADPDGGVTVVDWKTGEPPRGPEGRRQAAVQLAVYRLA 1017 >gi|71910407|ref|YP_281957.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005] gi|71853189|gb|AAZ51212.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005] Length = 1071 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 136/986 (13%), Positives = 278/986 (28%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPKKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKSDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + S N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVSTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I ++ + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFQLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LMTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|327540075|gb|EGF26670.1| ATP-dependent nuclease subunit B-like protein [Rhodopirellula baltica WH47] Length = 968 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 91/633 (14%), Positives = 196/633 (30%), Gaps = 68/633 (10%) Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINID 414 D LI A + ++ ++ L + + + + D + ++ G+ Sbjct: 263 LQDGQLISAGDISDQTAAVMETLAELGQKYRVDQITIGVTDESQVEPIENRCDLLGVATH 322 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 G + T ++ ++ + + + ++A LV+H + V Sbjct: 323 RHLGHRVGQTAVGRLMHLIVTYLQRR-TWRSLAALVRH---------------ADVTRYV 366 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + R + L+ L + + P E + ++D L + Sbjct: 367 SERIPDHPESETWLRELDQLLSSAFPRSVDEPLPAEVQQTETADQIRTVLDQWLSPLIQN 426 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL----------WFEEEGKTL 584 + + + +I +L Q + + + ++ + + Sbjct: 427 TEPQPIRQWSETLQAI--LLELHGEAAQTLLPIDPDSMEEPAETEPDASLSRTQQALRAV 484 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDT 643 L + + + + + V+ + S T + +LG L+ L + Sbjct: 485 FRLLHRFADLSPSLDEPVEGSVAVEMLASRMSEVRWVDDPSPTDVELLGWLDLALDDSPA 544 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI--YTR 701 L++ GLN P+ + +PFL + ++S L+ ++ + H + +R + Sbjct: 545 LVVCGLNHPFVPEAQSGDPFLPQSLRSTLHQSANDRRYARDVHAMQQLLTSRETVRFLVG 604 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 S + PT SR L +L R + ++ + + P Sbjct: 605 SHSADGSPTPPSRLLAAATPEEAAKRVCDLLTIPRPKIVIEPVQPPPAVSVDSQVFFAPP 664 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 P T S + + PY Y R +L+L + + G L H + E Sbjct: 665 PPEPGRTIDTLSVTAFSAYLACPYRFYLRHVLRLRPLDDSPLELAANQFGDLVHGALEEF 724 Query: 820 IK------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + + + + + HF + + + + + Sbjct: 725 GRGDYKNETDPKRIEEALIEELHRYAVKHFGDNT--STTVKLQVRQAQRRLKTVALRQAE 782 Query: 874 I-QSSIEKIFVN----------------IPAKMAIESIGIHLTGFADRIDLLKS-GFVDI 915 + + V P + ++ L G DRID G I Sbjct: 783 RAAAGWQIHAVEDAVDEKKIHPITGKPKKPTGITLDGQFTGLRGRFDRIDFHPETGRWAI 842 Query: 916 TDYKT-GDNPKKETAQKL-------IDPQLSLE 940 DYKT G P+K+ +KL +D QL L Sbjct: 843 LDYKTHGHKPEKKHLKKLPDGSTQWVDLQLPLY 875 >gi|327534743|gb|AEA93577.1| exonuclease RexB [Enterococcus faecalis OG1RF] Length = 1196 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 117/989 (11%), Positives = 255/989 (25%), Gaps = 147/989 (14%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A ++ + + E L + N + L + + + +L+ Sbjct: 91 ADVLSDAGAAMIFRKILVEAEEELQIFRGEINKPGFIQQLFQLYQEMCEGNIEIAELYPF 150 Query: 173 KNEKYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 ++ L L + + ++ + S +++ +E+L Sbjct: 151 LEKQTENPKGQDLQLKFQDLTLIFTRFQLQMSQYGYES-----AEIIQHLSEYLQTVDLS 205 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + +I+G +L+ + V LD P + + + + Sbjct: 206 NVQFVISGYQQFTARELKLIEVLMAQAGSVKVALLLDKQYPHDLPDPRSLFYEAGQTY-- 263 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H Y LA+ K++ +S+ + + ++I+ L + Sbjct: 264 ----HQLYQLAR-----------QKQIPILSDYVEKKEVLITNPDLQGLNDYWIQSQEHL 308 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN-LARRV 402 + + L A+N +EE +A +R + E K+ ++T D + + Sbjct: 309 PPLSTSDWSGDGLFLWRAENVKEELTHVATEIRRLVVEEGYRYKEIQVLTRDLDCYENLL 368 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------ 456 + I + + + + + SL + + ++ L Sbjct: 369 EPIFAEHEIPVYVDRDMAMDRHPLVEWIESLFAIHSYNYRYRDVLRFLRTELFMPMNQHA 428 Query: 457 --------FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + R + E V L Y K R + Sbjct: 429 TSEESLTDWLNQRNAWRRKVDITENVVLAYGYEGYYWSQEKDWEFIRYDFEAEEQEDVAT 488 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S ++ L+ Q + T L S Sbjct: 489 MEEESNAIRQSLQRLLPSYFQAMISAKTGLEAATVFYHFLLQSGVATQLKMWRLQAIEAG 548 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + E+ L SL + + + + +I ++G + Sbjct: 549 QLETAR-NHEQTWDALMSLLDEYVTVYGESSFDFTTFQEIFVSGLEGLHYSKVPTAIDQV 607 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 + +R G+ E ++P+ LS + +N E + Sbjct: 608 QVRAMDLTRPGAAKVTFAIGMTEEIFPQKIENKTLLSDEERQTINDTLTENQYLRGTTGR 667 Query: 680 YIGQAAHDFEMAN--GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGTDFFDNLK---- 732 I Q + L T S+++ S + + + F+ + Sbjct: 668 KIAQEPFVAYLVFSSARERLYLTYPSVKDTAQEVKPSPYFKNIQKDLNLPVFEKNETTIF 727 Query: 733 -------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 Y +L +Q + P + Sbjct: 728 DDETTSLAHISTYRTLIGELTRLKRQRKETQEGLLPFWLNMEKALMNQSIAPLAKQVFES 787 Query: 771 -------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 S S ++ Y ++R L+L F Sbjct: 788 LTHQNIPEKIDEVLAEPLYGKDIYTSVSRMESFYRCQYQYFSRYGLRLKERDVF--GLSP 845 Query: 806 TDRGTLFHNIITELIKKR--INKNTPEINHLMKQIIDSHFEKENLPPH------------ 851 G FH + + K +N E+ ++ L Sbjct: 846 AATGEFFHEALDQFFKLLIMNQRNLSELTDQEVNLLAEEVLNSILGDARFSVLTTSSRMN 905 Query: 852 -IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIESIG-IH 897 I K+ S+ + +S + + + ++ +++ G IH Sbjct: 906 YIRYQLSQTIKKV--SWALKRQSQRSGMTTVQTEVLFGQIAAKKGISGLELPLKNQGKIH 963 Query: 898 LTGFADRIDLL--KSGFVD-ITDYKTG-DNPKKETAQKLIDPQLSLEA-AALKAGSFSQI 952 + G DRID L + DYK+ A + Q+ AL Sbjct: 964 VRGKIDRIDQLVIPESTYLGVIDYKSSHRKFNMTEAYYGLAMQMLTYLDVALMDSVQLVG 1023 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K A Y+ + +D ++ Sbjct: 1024 QEAKPAGSLYLHVHNPTLSYEGKDDIEQQ 1052 >gi|229821383|ref|YP_002882909.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229567296|gb|ACQ81147.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1085 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 121/994 (12%), Positives = 256/994 (25%), Gaps = 87/994 (8%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS- 104 + + VPT+R +R + ++++ + + L P + Sbjct: 77 DLLLLVPTRRQAARVREAVATAVRHTVGRV-LVRTPASLAFSVLRSRATLLGEPAPALLV 135 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + LA L+ + P S+P L D++ Sbjct: 136 GADQDRILAELLAGHAEGEGRPVP-----WPPSVPREALALRAFRGELRDVLMRAAEAGW 190 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA---------SSPVGYQIALM 215 E+L + W+ A L ++ V + +A Sbjct: 191 DGEELARQGRRRRRPEWVACAAVLAEYTEITQLSSVTPDRGAQYDVATIVDEAARALATW 250 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 A+ +I + ATARL+ T+A H + ++L D + Sbjct: 251 EADLPGHEPPRWRTVIHDDYQDATLATARLLGTLAGHGSSLLLL--GDPDTSVQTFRGAV 308 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + + ++ L + ++S+ + + Sbjct: 309 PSLVARAGAAGSDVGAFGATVHTLRTVWRGTPALRSLVASLSDHLPALGGHERRRAAVAP 368 Query: 336 TSDMRNTDILENKIPNIQK--------CFSDVALIEADNEREEAISIAIALRMSLDENKK 387 + E + + V + + EEA +A LR + Sbjct: 369 AATGVPDGREEPGAWDPGRMRGDVDPLGSDAVEVAVVRSAGEEARLVARRLREVRLRDGV 428 Query: 388 KS---ALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL-ND 442 + A++ ++ L G+ + SA +PL L L + Sbjct: 429 EWSRMAVVVRRTAQVAPLRRGLRAAGVPVATASAEVPLRDEPAVRPLLRALAMLDAGTCT 488 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+ PL L + L + G L L+ D Sbjct: 489 PEEASWLLCSPLGG--LDAVALRVLRRELRREEIAGGGERASDELLVELLDDPSRAATLP 546 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + +RL+ A + T L ++ D + L + Sbjct: 547 PRLRRACARLARTLARGAAAAAEPGASVETLL-------------WALWDASGLASDWRE 593 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L + + +A + T+ +T+ + Sbjct: 594 RALGSGPTAERADADLDAVIALFRAAEQFADRTPGARA-PDFLTYLETQEFASDTLAARG 652 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---------LN 673 ++ ++ +L + +D +++ G+ E VWP ++ L ++ Sbjct: 653 RRAESVPVLTASAAAGQEWDVVVVAGVQEDVWPDLRLRDSLLGAQAVAEVAAGRDAASAG 712 Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ---------------- 717 A + + ++ +R + T S +L+ Sbjct: 713 PAQARRAVLHDELRMFVSALSRARRRLLLTAVQDGETRPSEFLRLASAGPAPRADDEPDH 772 Query: 718 -------RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 L + G RG+ W +L + P P + Sbjct: 773 RLVRVPPALDLRGLVGVLRAETLRGRAADPWAVRLLASLAAAEVPFAHPDAWAGLAPTST 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 P + + L+ + G+ + L+ + Sbjct: 833 PQQLWADDDVVPVSPSSLEYLQACALRWLLTTAGGRS-GSALPQEVGTLVHEIAADLPHG 891 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + +D + LP W + + + V++ + Sbjct: 892 GAAELLAELDRRWPALGLPEG----WAARRTRAGAEEMVRLLADYLAGVPGHVDVEVPVD 947 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + G DR++ + G V I D KTG + PQL A Sbjct: 948 VVVDRARIRGRVDRVEHTQDG-VRIADLKTGATAVTAQEAEH-HPQLGA-YQAAARAGAF 1004 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 A L Y+ + D Sbjct: 1005 DGAAADGARLVYVGAGGRSAKHRQQAAPPPGDED 1038 >gi|257884721|ref|ZP_05664374.1| exonuclease RexB [Enterococcus faecium 1,231,501] gi|257820559|gb|EEV47707.1| exonuclease RexB [Enterococcus faecium 1,231,501] Length = 1175 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 112/929 (12%), Positives = 246/929 (26%), Gaps = 137/929 (14%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L ++ + T + EDL L + L LK+ + L + Sbjct: 122 RGFIRQLQELYSELRTGNIQPEDLMLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTQRAL 181 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + A ++ + I++G + +L+ + + L L Sbjct: 182 TNE-----DALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-L 235 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + +T + + + + L+D E + Sbjct: 236 DRPYTADLPEVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP---------- 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + L + T + + + L EA+N EE +A+ +R + Sbjct: 284 -------TELQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLV 336 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++T + +L + I I + + SL Sbjct: 337 SEENYRYRDIQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDR 396 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSL 491 I K L E L K + + +Y Sbjct: 397 YSYRLSDIMRFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTRE 456 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI- 550 + L E+ + L + + + KT + + Sbjct: 457 KDWQFVAYDFEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKESKTGQEAANVFYQFL 516 Query: 551 --SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S + + + + E+ L L + + + +I Sbjct: 517 IQSGVQQQLLFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYAVIYGESAFDWSLFQEI 575 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 IT ++ + + I R GLN+ V+P LS Sbjct: 576 ITSGLENLSYGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEE 635 Query: 669 QSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWL 716 + LN + +GT L + + + + S +L Sbjct: 636 REVLNQALPDGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYL 695 Query: 717 QRLLVLG------------------------------------GTDFFDNLKKRGQ---- 736 +R+ D + K Q Sbjct: 696 RRITEYLSVPVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKE 755 Query: 737 -----CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYAR 788 + ++ ++ + + + P E S S ++ N Y + + Sbjct: 756 LVLNSSWRNFALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQ 815 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDS 841 LKL G +H + K +N + + ++++ Sbjct: 816 FGLKLKER--TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQE 873 Query: 842 HFEK---ENLPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK------- 888 F + E L + + R+ + ++ ++ + + + I Sbjct: 874 VFGELRFEILDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKG 933 Query: 889 ---MAIE---SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLS 938 + + +H+ G DRID+ + + DYK +G + A + QL Sbjct: 934 ITGLELPLSNGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLL 993 Query: 939 LEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + A + K A +Y+ + Sbjct: 994 TYLDVALMDAVRLTGKAAVKPAGSYYLHV 1022 >gi|296122608|ref|YP_003630386.1| ATP-dependent nuclease subunit B-like protein [Planctomyces limnophilus DSM 3776] gi|296014948|gb|ADG68187.1| ATP-dependent nuclease subunit B-like protein [Planctomyces limnophilus DSM 3776] Length = 1113 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 123/1096 (11%), Positives = 277/1096 (25%), Gaps = 185/1096 (16%) Query: 27 NGTLVENFRYDPLNPLLLASVTI-----YVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 RY LA + P+ R + +E+ K P + + Sbjct: 11 ARHQEALARYASHLGQGLADGQLGTGLWLTPSARTHSKTYQALLELLKGKIA-APNLHTF 69 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 E + + P++ + L L+ I + Sbjct: 70 ESFSEIILSHGSAAAT----PITPSTQFLLLSHAIQTVYQ-----------RGDCEEFSA 114 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 L K ++D I ++ +E E+ ++ G I + + L Sbjct: 115 VIETRGLTKIVSDWIAELKRDETWPEEFLKSCQQQKGGATGKDLALAAIYHE-YQALLNA 173 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 G A ++ ++ G L+ A ++ Sbjct: 174 RGWYDQEGRSWLARAAVSQGARAPFDQVRLVVCDGFVDFTWIQYELLEQFARWNADIVIT 233 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 E ++ +S A L+I + +K L + Sbjct: 234 LP-------------DEFASQRNTSFDRSE-----LFAIPRRTLEILKSRIKPLQEIRVH 275 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + P + +I + + I A E +++ ++ Sbjct: 276 SISTNPDHGAV--PTGIEQLARNLFGNPRIVSRCSTAAGFDAIAAGGPHRELEAVSHQIK 333 Query: 380 MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 ++ ++ + A R GI L + + L+ Sbjct: 334 KWRSSGFLAEEIVVVVRGLASEASRWLDHFELAGIPAYAPQASSLESCPVVRWMAQLVKL 393 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + +V + + ++L+ Sbjct: 394 ELNDWTSHDLRLVVSSTFFRPAQ-----------------------FPSKAKRALLAWLA 430 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTK 555 + ++ + ++R D + + L T + S W Sbjct: 431 KSPASSRKILSLKARERAADPSALTTEKEINHTLVSQGLETLLRVTEKLSTSHSFEGWID 490 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII------ETGSCIKANAIEWIDII 609 L + + + + L + ++ + S + W ++ Sbjct: 491 LWAAIISQWTPFLPDSSNDRADRADWELLQRILRRVSRCRGTWQEPSERLSLQAWWSEVE 550 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L ++ P I L + +++ G E +P N S + Sbjct: 551 ACLSVERSLPPAPSPGMISLIDPAQARFLDSARCVVIVGATEQAYPAADHTNCLYSHAER 610 Query: 670 SDL-----NLKTAEKYIGQAAHDFEMA--NGTRHLIYTR-SLRENNIPTIASRWLQRLLV 721 L L E + + F T +L+ T ++ S ++ Sbjct: 611 QSLIAAGLRLVREEDHSSEETLLFWQLVSMATENLLITYPAINAKGQELFPSPFVLAACD 670 Query: 722 LGG---------------TDFFDNLKKRGQCYLD-----------WTRKLDYTTKQPHYK 755 L + + +R + W L TT+ Y+ Sbjct: 671 LFTKDVQLPRHVGSIHVMPEREEIHTRRDLRIVAFEQAMTGHAGWWKTGLLDTTEGQAYR 730 Query: 756 RPKPFPPLEAQPRT-----------------------------YSFSEIKQLINDPYAVY 786 P+ +S + ++ N P+ + Sbjct: 731 NMARGLPMLQARYRTEGFTEYEGMLNEPALREEFARQYGPEHQFSVTRLELYANCPFRFW 790 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 +L L + + RGT H+ + L+ + + +I H E Sbjct: 791 IEEVLGLAPRETKQLSTNYLMRGTALHSALASLLGS--GRLALADEAELSRIFAEHVAVE 848 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI--------------------- 885 ++ + + ++ ++ ++ Sbjct: 849 MQRRAKGSPLAEAMARLDSQIVSAWSEQFAASQREYLETMVSAWGGMPETTLPEVAFGQV 908 Query: 886 -------------PAKMAIESIGIHLTGFADRID--LLKSGF--VDITDYKTGDNP---- 924 +++ + L G DRID L +G I DYK+G Sbjct: 909 YDDHGELIHGPYPALEISRGGHLVRLGGKIDRIDAHKLPTGEQFFSIIDYKSGGASQYRF 968 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 ++ Q+ + QL + A+K + D + + L+++ + + +K + Sbjct: 969 DEKAVQQGLSLQLVVYLLAVKRLRMAG-DDAEAWQAGFWGLRKEGLVAGLKAGRKSKEWN 1027 Query: 985 ELSEKSLKNLIEIVTL 1000 L E S+ L E V Sbjct: 1028 RLDEDSVHRLEEAVQQ 1043 >gi|324993969|gb|EGC25888.1| exonuclease RexB [Streptococcus sanguinis SK405] gi|324994712|gb|EGC26625.1| exonuclease RexB [Streptococcus sanguinis SK678] gi|327463227|gb|EGF09548.1| exonuclease RexB [Streptococcus sanguinis SK1] gi|327489959|gb|EGF21748.1| exonuclease RexB [Streptococcus sanguinis SK1058] Length = 1093 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 119/923 (12%), Positives = 256/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAHHILSGDTDEELKNLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFFQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|329894921|ref|ZP_08270720.1| RecB family exonuclease [gamma proteobacterium IMCC3088] gi|328922650|gb|EGG29985.1| RecB family exonuclease [gamma proteobacterium IMCC3088] Length = 863 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 99/732 (13%), Positives = 219/732 (29%), Gaps = 92/732 (12%) Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-EN 385 ++ + + +P ++ + E+ +A + + + Sbjct: 184 LTPLQRAACERVSERVRFVRSVLPPSIDAAKT-SVCAFQDADEQLRWVAAWAKAHYESKQ 242 Query: 386 KKKSALITADRNLAR-RVKLELTRF---------GINIDISAGIPLSTTLHSSILTSLLN 435 ++ ++ D N R R++ L + + ++ SAG+ S S+L Sbjct: 243 GERLGIVVPDLNTHRQRLEYHLRQAFGLEHSDYTSLPVNFSAGMAASQVPLIDAAASVLK 302 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + L + P + AL +A +S ++ L+ L + Sbjct: 303 LSLGRLRPPELLALARSPYLSLCVSHHEFRALREALYDLAPAKLGHSELLLILEQLSKEV 362 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + L + + + + + Sbjct: 363 PD----------------------------------SALSRWLLTSRVDSKDATCLEHVR 388 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ R L ++ ++ +L + G K A + + ++ + Sbjct: 389 HWEQSLQAAGWPGKRGLDSVEYQAFKLWQRTLRDLVSWDGLRPKWAASDALTLLESSLTN 448 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 +V + +LGTLE+ L FD LI+ G +P+ A +PFL + +Q + Sbjct: 449 -SVFQPETPDQNIQVLGTLEAAGLCFDRLIVTDAVAGHFPERIALSPFLPKHLQRQYKMP 507 Query: 676 TAEKYIGQA---AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 A++ + MA ++ L ++ + + L +L + Sbjct: 508 RADEDQEYQLAKSLLEGMAARSQSLYFSYVALADESKVAVTPLLSQLEQSFPVVAELDRP 567 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + P L+ + P Y+R L Sbjct: 568 VIPGVWSMMLES-------RGLTLTTPQGDLKGGAYRLGMHAL-----CPMQAYSRYRLD 615 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIK---KRINKNTPEINHLMKQIIDS--HFEKEN 847 + + ++G + H + L + + N +I + + + S + Sbjct: 616 IPEEASLEDGLSAKEQGLVLHKSMELLWRGKNRLEQVNPADIAPAVAEALKSISRARQVL 675 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907 LP + +LE E + + K + G + DR+D Sbjct: 676 LPDLALEAEQLRLETAIRLWLELESQRVPFNV---LEHERKAELNLKGWTFSFRLDRLDA 732 Query: 908 LKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 L + I DYK+ +L QL L A AL V + Y ++ Sbjct: 733 LADDYSVIIDYKSTAPSTSTWFGGRLEQAQLPLYALAL---------GEHVKGIAYGQIS 783 Query: 967 QKFKIDCITNDKK--------KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 + ++ + E + L++++ L+ GE + + S ++ Sbjct: 784 STKPAKLVGAGQQGFGKGVKVIENWGEQKTLWERALLDLIDELEVGE----ASVLPSARA 839 Query: 1019 NIQSEYDHLARV 1030 ++ + RV Sbjct: 840 CRYCDFAAICRV 851 >gi|293572572|ref|ZP_06683546.1| exonuclease RexB [Enterococcus faecium E980] gi|291607355|gb|EFF36703.1| exonuclease RexB [Enterococcus faecium E980] Length = 1175 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 119/965 (12%), Positives = 249/965 (25%), Gaps = 150/965 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + L +++ +L ++ + L ++ + + EDL Sbjct: 99 MILRQILEKHEEELTIFRGEINKR-------------GFIRQLQELYSELRIGNIQPEDL 145 Query: 170 HAL-KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L + L LK+ + L E S+ + A ++ Sbjct: 146 MLLFGDSPNAEDQQLKMKDLKLIFSAYDSELTERALSNE-----DALAILANYMQTQDFT 200 Query: 229 PI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + I++G + +L+ + + L LD + +T Sbjct: 201 NVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLPEVLTLFHETG----- 254 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 KL L + K V ++ + L T + Sbjct: 255 -----------KLYFRLFQSARERKVPILVDRFAPEQNRPTALQLLQTM---WEETSSQK 300 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVK 403 + + L EA+N EE +A+ +R + + + ++T + +L + Sbjct: 301 KATVHKLGEQEALHLWEAENPTEEVRQLAVEIRRLVSEENYRYRDIQVLTKNMSLYGNIL 360 Query: 404 L-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 I I + + SL I K L E Sbjct: 361 RPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIMRFFKTELFLSMETET 420 Query: 463 YLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 L K + + +Y + L E+ Sbjct: 421 ELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYDFEAEQIEDVQYLEEQ 480 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLTVTCLQNVCLDEHRKL 572 + L + + KT + + S + + + + Sbjct: 481 SNTIRRLFQKAVPAFFKKIKKSKTGQAAANVFYQFLIQSGVQQQLLFWRNQEVDRGNLEA 540 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 E+ L L + + + + +IIT ++ + + I Sbjct: 541 AR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLSYGKIPTAIDQVRINR 599 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-------KYIGQAA 685 R GLN+ V+P LS + LN + + Sbjct: 600 LELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALPDGQFLFDPSKESISF 659 Query: 686 HDFEMAN----GTRHLIYTRSLR-ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 F+ GT L + + + + S +L+R+ + D Sbjct: 660 EPFQAYLVFISGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSVPVERKEHLTIESDPD 719 Query: 741 ----------------WTRKLDYTTKQP-------------------------------H 753 + LD P Sbjct: 720 CYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRNFALQIFESQEHLNVP 779 Query: 754 YKRPKPFPPL-EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P+ + S S ++ N Y + + LKL G + Sbjct: 780 VSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER--TVYGLTPAATGDFY 837 Query: 813 HNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---ENLPPHIDIIW-RHLFH 861 H + K +N + ++++ F + E L + + R+ Sbjct: 838 HESLDRFFKLLFSNQLSLVNMTDAQRKDFTEKVLQEVFGELRFEILDSSARMNYIRYQLG 897 Query: 862 KISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE---SIGIHLTGFADRID 906 + ++ H++ + + + I + + +H+ G DRID Sbjct: 898 QTIQKVAWALHKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLSNGGKLHVRGKIDRID 957 Query: 907 LLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANL 960 + + + DYK +G + A + QL A + A + K A Sbjct: 958 VASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMDAVRLTGKAAVKPAGS 1017 Query: 961 FYIRL 965 +Y+ + Sbjct: 1018 YYLHV 1022 >gi|50913957|ref|YP_059929.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394] gi|81372202|sp|Q5XCW7|ADDB_STRP6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|50903031|gb|AAT86746.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394] Length = 1071 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 134/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ V+ G ++ + K + Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQ--EVITG--SYVSQKAYQKSFIKGNIYEA 239 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 S Q K + V + R + ++ D + Sbjct: 240 SLHFLQDLAQKYHIKPV---------FATSNQVFKPAFSRLTQLFEATHDFSQVDWQLQK 290 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 +L + +++EE +A ++R L E + ++ ++ Sbjct: 291 ND----------LDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKGIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + + DYK+ N T + PQ Sbjct: 850 IKVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGVVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQIAPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] Length = 1087 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 131/1080 (12%), Positives = 275/1080 (25%), Gaps = 136/1080 (12%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N + V T++A Sbjct: 21 DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITGKKSTILPIIKSLGDVV----EEKFTADLLLSYNLNPPVSNIQRLLELA 113 + +R+ + G + + P + + F LL + L PV RLL Sbjct: 81 RRVRTRLARLAG--AGLAPGSGASDESATVSTYHAFAGTLLREHGLLLPVEPDTRLLSET 138 Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLH 170 L + + + L ++ + A + L+ LA+ + D + + E L Sbjct: 139 ELWQLAYDVVCAHPGHL--DTEKTPAAVTAMVLRLSGALAEHLVDTDQLRDTHVELERLV 196 Query: 171 ALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIALMRA 217 + L +R+ A R Sbjct: 197 HTLPAGPYQRDRGPSQWLLRMLATQTERTELVPLIDALHQRMRAEKVMDFGMQMAAAARL 256 Query: 218 -----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAI 270 + ++ +++ + A +S++ +G + D Sbjct: 257 AARFPQVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFGGGADDGLALTAVGDPIQSIYG 316 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 W + + +++ YS +L + VS E RS+ + Sbjct: 317 WRGASATNLPRFTTDFPYSDGTPAPTLELRTSWRNPPSTLHVANAVSEEARRRSVAVRAL 376 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390 PD L N + + +D + +A Sbjct: 377 RPRPDAEPGTIRCALLNNVAAERDWVADHLARAYHGAIGRGEAA------------PTAA 424 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 ++ A + LT G+ +++ L + L ++L I A+ ++ Sbjct: 425 VLVRRNADAAPMAEALTARGVPVEVVGVAGLLAVPEVADLVAMLRLIADPTAGSAVMRIL 484 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 P +FG + + A+EL + + ++ A + P Sbjct: 485 TGPRWRFGARDIAAL-WRRAVELDDRPKGELGTADIVAQAAPDADTACVADAICDPGDAE 543 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL--QNVCLDE 568 R S E V L + L + + L Sbjct: 544 RYSPAGYERIVALGRELTMLRAHLG------------HPLPELVAEVRRVLGLDAEARAA 591 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 E S L S + + ++D + +G + Sbjct: 592 RPVAAGWAGTENLDRFSDLVSDFAGHAGASVSALLAYLDAAVEVENGLAPAELTVSHDRV 651 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------------- 674 IL ++ L + + + L+ V+P T +L+ L Sbjct: 652 QILTVHAAKGLEWQVVAVPHLSARVFPSTTQARTWLTDASDLPPLLRGDRATESEIGVPV 711 Query: 675 ----------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIP 709 + + + + + P Sbjct: 712 LDTSDIYDRKILSDKISDHKKSLDQRRVDEERRLLYVAITRAEDTLLLSGHHWGATESKP 771 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------QPHYKRPKPF 760 S +L L + + T P Sbjct: 772 RGPSEFLCELKTILEEATAAGTPCGEIEHWAPDPAPGETNPLRDQVVEALWPPVASADDH 831 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 AQ + + D A L + D G L + + EL Sbjct: 832 VHRGAQLVAAAMAGEVSAEADQEGWAADVDALLAERERPPQQEDTELPGQLSVSTLVELS 891 Query: 821 KKRINKNTP---------EINHLMKQIIDSHFEKENLPPHIDIIW-----------RHLF 860 + T + + L+ ++ + + R + Sbjct: 892 RDPKAALTRLRRRLPQRPDPHALLGTTFHEWVQRYFHAERLFDLDDLPGAVDSDSGRAVE 951 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 ++ + ++ + V +P M + + G D + G + D+KT Sbjct: 952 ESLAELQDAFVKSPWAARTPVEVEVPFDMVLGET--VVRGRIDAVFAEPDGTTMVLDWKT 1009 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKK 979 GD P+ A++ QL++ A + V F Y+R Q + + ++ Sbjct: 1010 GDPPETPEAKEHAAVQLAVYRLAWA--AMRGCPPESVRAAFHYVRSGQTVIPETLPGAEE 1067 >gi|325570416|ref|ZP_08146193.1| exonuclease RexB [Enterococcus casseliflavus ATCC 12755] gi|325156626|gb|EGC68803.1| exonuclease RexB [Enterococcus casseliflavus ATCC 12755] Length = 1212 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 112/947 (11%), Positives = 229/947 (24%), Gaps = 143/947 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELNAS 205 + L + T EDL A L I + + + L+E Sbjct: 128 GFIQQLLAFYQEMHTSRLGIEDLLAGGAAPSATQDEEKKYSELAIIFQRFEQELLERALQ 187 Query: 206 ------------------SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + II+G + +L+ Sbjct: 188 VEQPITLLTCFLEGSLLGDSSVDHAMPTTVSLNKAPDLSHALFIISGFSAFSTQEQQLIQ 247 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + ++ LD P E T + T+ Q L + Sbjct: 248 VLMKRSHV-VIDLILDRGYPQ-------EMPTPLNLFYEAGRTYYQ--LISFARDNQVNI 297 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++L I +++ +T + +A+ + N Sbjct: 298 YLDQKLSVNQEVDKEDEGSIPQAYKEVETF--WRQTQSQANYHQQTSVKDFLAVWKVGNP 355 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419 EE IA ++R + + K+ L D L + + T F I I Sbjct: 356 EEEIRQIAASIRGMMSDKKRYPTLRYRDIQLLIAEPEVYHQYIPKIFTEFEIPFYIDEEQ 415 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470 ++ L + I L++ L A + + + Sbjct: 416 MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 475 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E AL + + L + + + + + V L Sbjct: 476 TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 535 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 +T T + L + + E+ + L L + Sbjct: 536 LTAARTNRDAVELLYRFLLNAGVEQQLRHWRDQAIQQGKLDQAR-NHEQAWQALMDLLDE 594 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + D++ ++ T + I +R GLN Sbjct: 595 YATIYGDEPFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 654 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699 E P+ L+ + N + + A + + T HL Sbjct: 655 ETALPRKMENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 714 Query: 700 TRSLRENNIPTI-ASRWLQR--------LLVLGGTDFFDNLKKR---------------- 734 + ++ + I S +L R L G + + Sbjct: 715 SYAVNFDTQQNIKMSPYLDRVVKHLDVPLQERGILALVSDPRDYVGSYRGLIYQINNLSQ 774 Query: 735 ---------GQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770 + + + L + + P P +AQ Sbjct: 775 QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 834 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827 S S+++ Y + L+L + G FH+ + +K I +N Sbjct: 835 SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 892 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877 T Q ++ ++ ++ L + + Sbjct: 893 TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 952 Query: 878 IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921 + + + +H+ G DR+D + + DYK+ Sbjct: 953 FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLHVRGKIDRVDTAKTEEEQWLSVVDYKSS 1012 Query: 922 DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + QL A A + A +Y+ + Sbjct: 1013 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPKVRPAGAYYLHV 1059 >gi|332362057|gb|EGJ39859.1| exonuclease RexB [Streptococcus sanguinis SK49] Length = 1093 Score = 158 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 120/923 (13%), Positives = 252/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDHFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQGFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ +I + + Sbjct: 480 TTLLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNEATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A H T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRHTALSLMNSATKELVLSAPALVNEVEDSVSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLSAEGISIPH 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISQELKTESLKPETLKALYPQDQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDGSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPTGIETIGEETGFGSASKPFLILENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSVKPLQ 972 >gi|270292731|ref|ZP_06198942.1| exonuclease RexB [Streptococcus sp. M143] gi|270278710|gb|EFA24556.1| exonuclease RexB [Streptococcus sp. M143] Length = 1091 Score = 158 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 125/974 (12%), Positives = 263/974 (27%), Gaps = 154/974 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLVELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 T + + DL +L +E L + + T L + + L+ A Sbjct: 127 TAQMNFLDLESLTDEDKRAD-------LLLVFEKVTAYLNQSQLA-QGSQLSHLIEAIEN 178 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + ++ ++I G T R++ + G ++ G S Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIVIGA-------------YAS 223 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +S + Q S+ + L L K + ++ V SF Sbjct: 224 KKAYTSPFSEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHVKIDSFDKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393 + D E + +K ++ + ++EE +A ++R L +N L+ Sbjct: 276 ESSYDFSELALDVYEKDRENLQIWSCLTQKEELELVARSIRQKLHDNPDLSYKNFRILLG 335 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSEAMTHHPLTQFVESILRLKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + +S Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPAFQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + D E + +L + L + K S + +VT L Sbjct: 434 KFDLERLNAIRLRVLAPLETLFASRKQKTENLLQKWNSFLKEGSVTKQLQELTATMEALE 493 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E KT + + + + + +++ ++ + + +T+ + Sbjct: 494 QERQAEVWKTFCHVLEQFATVFAGSQVSLEDFLSLLHSGMSLSQYRTIPATVNTVLVQSY 553 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686 L D + GL + PK L+ + LN T E A + Sbjct: 554 DLISPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613 Query: 687 DFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------ 736 + M + L+ + N + S +LQ L+ G + +G Sbjct: 614 RYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVSFGFNRTEKKIHHKGMSKEDMG 673 Query: 737 ----------CYLDWTRK--------------------LDYTTKQPHYKRPKP------- 759 Y LD P Sbjct: 674 SYHSLLSSLVAYHQQAASSENEQDVTFVKVLARVMGKKLDQKGLTNPALPTSPSSKPLEK 733 Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + S S + + + Y+ + R +L L + PD G H I Sbjct: 734 ETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 791 Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 +K + + + FE + + ++ + H + Sbjct: 792 FERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850 Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925 +IE I + ++ +H+ G DRID L G + + DYK+ Sbjct: 851 HNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGAIGVVDYKS----S 906 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 Q ++ QL AALK Y+ + + + Sbjct: 907 LTQFQFPHFFNGLNSQLPTYLAALKKEGEQNF-----FGAMYLEMAEPVQSLLAVKSLAG 961 Query: 981 YSADELSEKSLKNL 994 A+ + L Sbjct: 962 AVAEASKSMKYQGL 975 >gi|307704789|ref|ZP_07641685.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597] gi|307621698|gb|EFO00739.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597] Length = 1094 Score = 158 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 124/980 (12%), Positives = 254/980 (25%), Gaps = 163/980 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPQDLRVYGA---------IKQDPQFIQQLIELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + + DL +L +E + + Y + + L+ A Sbjct: 127 KAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSQLIEAIEN 178 Query: 221 HLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + I +I G T R++ + G ++ G S Sbjct: 179 NKVSSDFNQIALVIDGFTRFSAEEERIVDLLHG--KGVEIVIGA-------------YAS 223 Query: 279 TNITSSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 +S Q S L L +D + + S ++ S+ Sbjct: 224 KKAYTSPFAEGNLYQASVEFLHHLAAKYQTPAQDYSQSHEKMDSFDKASRLLEASY---- 279 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391 D E + + ++ + ++EE +A ++R L EN K + Sbjct: 280 -------DFSELTLDVDDEDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRI 332 Query: 392 ITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + D R ++ I + ++ + + S+L + L+ Sbjct: 333 LLGDVASYRLSLKTIFDQYQIPFYLGKSESMAHHPLTQFVESVLALKRYRFRQEDLINLL 392 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + L + + DI + + +S Sbjct: 393 RTGL----------------------YSDLSQADIDAFEQYIRYLGINGLPAFQQTFTKS 430 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 + + E L IL + L + K S + VT Sbjct: 431 HHGKFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKEGAVTKQLQDLTATME 490 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 L E K + + + + + +++ ++ + + T+ + Sbjct: 491 ALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLV 550 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----- 685 L D + GL + PK L+ + +LN T E A Sbjct: 551 QSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEEKQNLNQATEEGVQLLIASSENL 610 Query: 686 --HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG---------------- 723 + + M + + L+ + N + S +LQ L+ G Sbjct: 611 KKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHFGFSRKEKRMNHKGLSKE 670 Query: 724 ----------------GTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHYKRPKPF---- 760 D R Q R + Q K P Sbjct: 671 DIGTYHSLLSSLVAYHQQSETDETSDREQDLTFVKVLARVMGKKLDQQGLKNPALPTSPS 730 Query: 761 -----------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 Q S S + + + Y+ + R +L L + PD G Sbjct: 731 SKQLTKDTLQALYPTDQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLRPDARSHG 788 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSF 867 H I ++ + Q + FE + + ++ + Sbjct: 789 NFLHRIFERALQLPDEDSFDHRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT 848 Query: 868 LEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYK 919 H + +IE I + ++ + + G DRID L G + + DYK Sbjct: 849 -GHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRLKADGAIGVVDYK 907 Query: 920 TGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 + Q ++ QL AALK Y+ + + + Sbjct: 908 S----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLMA 958 Query: 975 TNDKKKYSADELSEKSLKNL 994 + + L Sbjct: 959 VKSLAGAVVEASKSMKYQGL 978 >gi|167771643|ref|ZP_02443696.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM 17241] gi|167666283|gb|EDS10413.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM 17241] Length = 1106 Score = 158 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 108/912 (11%), Positives = 240/912 (26%), Gaps = 122/912 (13%) Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215 I ++T E L G + + + + + E S P Sbjct: 123 ISELKTAGASPEALRGAAQ-DLGGAFGDKLSDIALIFDAYQAVI-ERGYSDPDDCLARAC 180 Query: 216 RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I G + A +L+ V +W +T Sbjct: 181 KRLEGRNF-FAGYDVFIDGFMAFMGAEWKLLKFV--------------LTDSPHVWAALT 225 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 T A L + + + P Sbjct: 226 CMGL-----WQGDETGALACAAHTAARLVRAAREAGAAVAAPVLLETPRRFV------PG 274 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSAL 391 + V + ++ +E IA + R + + + Sbjct: 275 ALAWIAQAYPQETPAPYDGAPDGVQIAACEDVYDEIEYIAGEICALVREKGYRYRDIALI 334 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 A ++ R+ I + + + + L+A+ D A+ L K Sbjct: 335 GRALEPYLVPLETVFARYDIPYFADRRVDIQVHPLVNGIFCALDAVRGRFDSEAVLALAK 394 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 ++ E L V + V + + + Sbjct: 395 TCISGIDAVEAGLLENYCFTWGV--------SGTVWAAPFVNHPDGMEGAFSDEQRERLS 446 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + ++ + + + + D + + + R+ Sbjct: 447 RINAARAALIGPLERLADSLRGCDGRGFARAIYSYLEQV-DAACRLRDYAEGMEEGDARR 505 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 +L + + L + I D++ + + + + Sbjct: 506 FLDL-SAQVWDAVIGLLDVFGGALAGISLPLARLTDLLRLGVSTVDIGSLPQTIDQVIAG 564 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAA 685 R + + GLNEGV+P ++ + S + L L+T E+ Sbjct: 565 TADRIRPNAPRAVFVIGLNEGVFPLWSSPSGIFSAAERERLRTQGVDLLRTPEQTALFER 624 Query: 686 HD--FEMANGTRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTD---------------- 726 + F + + L T LR+ AS + + L G Sbjct: 625 YYVYFALTQASEALWLTYPLRDAAGAARTASSAVDEVRALVGAPARGSAGGALARAAGER 684 Query: 727 --------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF----------PPLEAQPR 768 + + + + D + P L Sbjct: 685 SAFDAMMRHWRDDTPETAVLRSYFTEQDPARIRTLEALGAPRAFSLEGRGAARALFGTRM 744 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + P++ + R L+L + + + + G+L H ++ +++KK + Sbjct: 745 RISPSRAELYYECPFSYFCRVGLRLRPRR--RAEFNPIESGSLIHLVLEKIVKKYGGRGL 802 Query: 829 PEINHLMKQI---------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSS 877 ++N + + + + + P +E QS+ Sbjct: 803 AQLNGELLRSEITAIIDADLKARIANYDEMPARFKYLFRRLVGTIQRLIERLALEFGQSA 862 Query: 878 IEKIFVNIPAKMAIESIGIHLT----------GFADRIDLLK-SGF--VDITDYKTGDNP 924 E +P + + L G DR+D+L+ G V + DYK+G Sbjct: 863 FEPAAFELPIGLDAPVQPLDLRAPDGTRVIVEGIVDRVDVLEQDGKKYVRVVDYKSGAKT 922 Query: 925 -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 ++ Q+ + ++ D A + Y+ + D + ++ S Sbjct: 923 FSLSDICYGLNMQMLIYLFSICE-----ADGAVPAGVLYMPAR-----DSVIQAERNASG 972 Query: 984 DELSEKSLKNLI 995 +E+ + LK L Sbjct: 973 EEIQAQRLKRLR 984 >gi|327461178|gb|EGF07511.1| exonuclease RexB [Streptococcus sanguinis SK1057] Length = 1093 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 116/923 (12%), Positives = 254/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILSGDTDEELADLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDHIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + + + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISRILESRYDFSEPAVEVSETDRAQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFGQYQIPYYLGRSESMAQHPLVQFIESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDQFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ ++ + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAASYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTETLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 D G H I ++++ + + + ++ FE R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDWRLARAMEETSRETEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + S IE I + + + ++G DRID L K+ + Sbjct: 837 DTARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLGNGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + + D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYKEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|301301111|ref|ZP_07207268.1| putative ATP-dependent nuclease subunit B [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851240|gb|EFK78967.1| putative ATP-dependent nuclease subunit B [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1193 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 112/973 (11%), Positives = 271/973 (27%), Gaps = 148/973 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + + R + ++L + ++ +S + + D I+ ++ E+L Sbjct: 100 MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227 + I + + + + + ++ E + Sbjct: 154 SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 II G + ++S + + L+ + I + S + + Sbjct: 208 SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTD-----IEDLSDKQSLFYRS 262 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 T+ + I + + V + S + +++D++ ++ + Sbjct: 263 ERTYYLLYQQARKAQVKILNDVYPQELRVETP-----ELQSLAKYWKESTDLKPINVEKI 317 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404 + ++ +I+AD E IA ++ + D L+T D N R + Sbjct: 318 GDNH------NLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371 Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458 + + I + + +LT+L N + ++ + L+K L Sbjct: 372 PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLISKTEYGY 431 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516 K + + E + L+ + V R T V ++ Sbjct: 432 LGIKQFRQDLDLTENLILKFGFEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + ++ + + K L I+ + + L++ + Sbjct: 492 RRYIKEILPPFFKQLDEAENGKEAAQILMNFLIINGVPEQLINWRNK-ALEQGDMVMADR 550 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E+ +L + ++T + ++++++ +G T + + I T + Sbjct: 551 PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686 ++ + + G + V P L+ + + + EKY+ A Sbjct: 611 QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670 Query: 687 -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733 L ++ N S ++ R L G ++ LK Sbjct: 671 NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768 + + + K+P P + Sbjct: 731 VATKRTALSNLIGVARQAKGQKQPLPVMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790 Query: 769 ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S S+ ++ + YA + + LKL F+ + G +H Sbjct: 791 RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848 Query: 814 NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866 + +L+K T + P I+ I Sbjct: 849 MALDKLLKTLKQDKVLITDINKSQFDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908 Query: 867 ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907 + H + ++ + + + +++ G DRID Sbjct: 909 TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968 Query: 908 L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955 + + I DYK+ + + A + Q+ L + +I Sbjct: 969 MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025 Query: 956 KVANLFYIRLKQK 968 K A Y+ L+ Sbjct: 1026 KPAGAVYMHLQNP 1038 >gi|90962577|ref|YP_536493.1| ATP-dependent nuclease subunit B [Lactobacillus salivarius UCC118] gi|122448459|sp|Q1WRR9|ADDB_LACS1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|90821771|gb|ABE00410.1| ATP-dependent nuclease subunit B [Lactobacillus salivarius UCC118] Length = 1193 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 112/973 (11%), Positives = 271/973 (27%), Gaps = 148/973 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + + R + ++L + ++ +S + + D I+ ++ E+L Sbjct: 100 MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227 + I + + + + + ++ E + Sbjct: 154 SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 II G + ++S + + L+ + I + S + + Sbjct: 208 SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTD-----IEDLSDKQSLFYRS 262 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 T+ + I + + V + S + +++D++ ++ + Sbjct: 263 ERTYYLLYQQARKAQVKILNDVYPQELRVETP-----ELQSLAKYWKESTDLKPINVEKI 317 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404 + ++ +I+AD E IA ++ + D L+T D N R + Sbjct: 318 GDNH------NLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371 Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458 + + I + + +LT+L N + ++ + L+K L Sbjct: 372 PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLIPKTEYGY 431 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516 K + + E + L+ + V R T V ++ Sbjct: 432 LGIKQFRQDLDLTENLILKFGFEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + ++ + + K L I+ + + L++ + Sbjct: 492 RRYIKEILPPFFKQLDEAENGKEAAQILMNFLIINGVPEQLINWRNK-ALEQGDMVMADR 550 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E+ +L + ++T + ++++++ +G T + + I T + Sbjct: 551 PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686 ++ + + G + V P L+ + + + EKY+ A Sbjct: 611 QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670 Query: 687 -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733 L ++ N S ++ R L G ++ LK Sbjct: 671 NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768 + + + K+P P + Sbjct: 731 VATKRTALSNLIGVARQAKGQKQPLPVMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790 Query: 769 ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S S+ ++ + YA + + LKL F+ + G +H Sbjct: 791 RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848 Query: 814 NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866 + +L+K T + P I+ I Sbjct: 849 MALDKLLKTLKQDKVSITDINKSQFDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908 Query: 867 ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907 + H + ++ + + + +++ G DRID Sbjct: 909 TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968 Query: 908 L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955 + + I DYK+ + + A + Q+ L + +I Sbjct: 969 MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025 Query: 956 KVANLFYIRLKQK 968 K A Y+ L+ Sbjct: 1026 KPAGAVYMHLQNP 1038 >gi|331702531|ref|YP_004399490.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus buchneri NRRL B-30929] gi|329129874|gb|AEB74427.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus buchneri NRRL B-30929] Length = 1186 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 242/942 (25%), Gaps = 151/942 (16%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWTERLVELN 203 +A I ++ EDL + I + +R+ E N Sbjct: 122 GFIDQIATQIAEMQAGNVLPEDLLEMLQRPDSTITNDLRDKLHDFAIIYSQYVKRISE-N 180 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 L + + I G + L+ T+ N V LD Sbjct: 181 YFDSHTVLNLLSSKL--QDIDLSGYHFYIDGFSKFTAQECGLVQTLINQSASVTVSLTLD 238 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 PT + + L + + + Sbjct: 239 RPYPTE---------LPEQPNIFFQPAKLFHQLYRFAADNRVPYLK---------AVMAD 280 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + + + + ++ + +++P+ + V + +ADN E +A + + Sbjct: 281 QPRVDEDMQKLEAYWITSSSLGNHQLPDQIS-PNSVQIYQADNLYSELDQVATKIHQMVA 339 Query: 384 ---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAI-- 437 ++T + + + T I ++ +L +L + Sbjct: 340 TGKYRYSDFLILTRHLDAYQNILEPVFTTQQIPYFKDIQQSMADHPLVELLAALFDIYDP 399 Query: 438 --FKLNDFMAIATLVKHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + + + +K L +A + + + L+ + Sbjct: 400 NRTRNYRYDDVMRFLKSELVLPMIDGKPMAIDDYRQAVSLTDNLVLKNDYADTRWTQKAD 459 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKE---LAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + E ++ + ++ D + KTN+ + Sbjct: 460 WQYVWLPDSDEEQKTTKITDQDREISRKINIIRHMVRDLLPNFYKQFFKAKTNQEAAQIL 519 Query: 548 LSI---SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + DE + E+ +T SL + ++ + Sbjct: 520 YQFLVDAGVVDRLQDWRDA-ATDEGDINRSNQIEQVWRTFCSLLDECVQILGDKPFVPGD 578 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +I +G + + + ++ ++ + G N+ P Sbjct: 579 FWSLIYAGFEGADYSQIPSTLDQVSVSESGMVQMNDYRVTFMIGANDDNMPDRLVNENLF 638 Query: 665 SRVMQSDLNLKTAEKY------IGQAAH-----DFEMANGTRHLIYTRSLRENNIPTIA- 712 + L ++ Q A + LI+T + + N+ + Sbjct: 639 GDDDINQLQSNLSDDQYLNDPAEVQMAFEPYLNYLAFMTASDKLIFTYTNKLNDESAVKL 698 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCY-------------------------------LDW 741 S ++ R+ +N + W Sbjct: 699 SPYVSRIQHFFNLKIVNNPAIPDDEHDVMPYVGTKSGTLHHLIQVIQNNFDVQQDLSAGW 758 Query: 742 TRKLDYTTKQPHYKR-------------------PKPFPPLEAQPRTYSFSEIKQLINDP 782 L Y + P R P+ L S S+++ +P Sbjct: 759 AVILQYLQQDPEVSRQTSKLLKSINYTNVPQSLAPEIITDLYGSELNISISQLETFYKNP 818 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQII 839 Y + + LKL P F+ GT +H+ + +IK+ +N + + ++ Sbjct: 819 YEYFLKYGLKLQERPKFE--LSTASTGTFYHDAMDRIIKQIHAQNIDLASLSDQDVSDLV 876 Query: 840 DSHFEKENLPPH---------------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ P I + ++ + +++ + + Sbjct: 877 KETVDRIINDPQNFDYVVLTSSNRMHYISMQLAATIQQMIRAL--RDQQKLTPMRPQNTE 934 Query: 885 --------------IPAKMAIESIGIHLTGFADRID--LLKSGFVD-ITDYKTG-DNPKK 926 + +A + + + G DRID K I DYK+ Sbjct: 935 LIFGQPNQKQALNGLSFDLA-DDHQVKVRGRIDRIDSMTTKDKRYFGIVDYKSSDRKFDF 993 Query: 927 ETAQKLIDPQLSLEAAALKAGSF---SQIDCRKVANLFYIRL 965 A QL LK +A Y+ + Sbjct: 994 NAAYDGTSMQLLTYLDVLKHNLERLNPDDKEVALAGALYLHI 1035 >gi|315924913|ref|ZP_07921130.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter alactolyticus ATCC 23263] gi|315621812|gb|EFV01776.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter alactolyticus ATCC 23263] Length = 1130 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 124/1009 (12%), Positives = 273/1009 (27%), Gaps = 133/1009 (13%) Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 IE TG + + + SL + F+ + + + + R + L + IL R++L Sbjct: 63 LIEATGMRGLMGVEVMSLDRLAARVFSEVGGATAHF---IDDHGRRMLLTKSILSSRDEL 119 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWL 182 K + ++ + + +DL A L G Sbjct: 120 QIYGKSVGRR-------------GFVNDMEAFVGELRENGFTHDDLQAVLSEMPEGSLLT 166 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 ++ + L + L+ + + + Sbjct: 167 RKLKDTELILDAYEASLGNDRLD--ETDRSRLLSEKIRQANFLKDAQVWMDQFYTFSKND 224 Query: 243 ARLMSTVANHPNGAIVLPGLDCH---IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 ++ +A+ + LD ++ + + +++ + Sbjct: 225 FEIVGAIADRAQKLTITLPLDEDPTAADEDVFAIVRQTFADLSERTKAAGSE-------- 276 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L + + +S L P+ + + +K + Sbjct: 277 LKMMAVDP---------------------ESPLDPELTWLEYEWFS-LTPQPWEKVPEHI 314 Query: 360 ALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDI 415 L + +EA A + + L+ + + + L + I + Sbjct: 315 DLHVCSDLWDEAECAARTIIRLTRDEGYRYEDFMILVGSPETMGSEIARALAMYNIPSFV 374 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 P+ + L + L+A+ ++ K + + Sbjct: 375 DRLEPVMNHPLVAFLFAALDAVRIHLGGDSVMAYAKTAFSGLTPEQVMALDNYAQTF--- 431 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + R W + K+ + + + + + Sbjct: 432 ---GIKGWRWQKPFQKNRFRDGRNGQKDKRYLWDLDSLNQVKDRLLSPLMSLKKEMQEAG 488 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 ++ + L +++ T +D + L +F +I Sbjct: 489 CHRERIETLVHFLEMTNIPVQLDTMA-AEAMDNGDYQRAAVNNQIWNILMGVFDQINIAL 547 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + +IDI+ I+ + ++ T+ I L SR L++ G NEG+ P Sbjct: 548 GEADDDFPAFIDILRSGIETYHIGVLPKQRDTVAITDALRSRSDGTKILMILGANEGILP 607 Query: 656 KNTAKNPFLSRVMQ---SDLNLK-----TAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + P L+ + D L + +++ T L + S+ + + Sbjct: 608 AEQNQFPVLTDWERTRIKDAGLALQNNRAYLQNRELTVLYMQVSRVTERLYCSYSMNDAD 667 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------------------------LDW 741 I L R L+ + R + Sbjct: 668 GKAIRRSSLVRTLMKVFPNLEVRSSVRQDEWDLDWITGTPATINTLCLRSKDNDPVSAAV 727 Query: 742 TRKLDYTTKQP------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 LD + P P L +P S S +++ P+A + L Sbjct: 728 ASVLDPSLSTPGFFETDASLSPATATTLYEKPLHLSVSRVEKFNACPFAQFV--AFGLRP 785 Query: 796 IPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFE--------K 845 + D G + H +I + + ++ ++ + + F Sbjct: 786 QLVIPYEVTAPDMGNIMHTLIERIFKWTETYDQTLDTLSAEERGALIQTFLNDLIQNTHD 845 Query: 846 ENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIEKIF--VNIPAK--MAIESIG--IHL 898 +R +I + L + ++ K + I G L Sbjct: 846 AVFDSSGQFRYRGRQLRRIGETTLAALSAQLAKGTFVYRDSEHFFKEPLTIGGDGKAAEL 905 Query: 899 TGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 GF DRID G V + DYK+ + + QL + + Sbjct: 906 RGFVDRIDSFSDGEDTFVKVIDYKSSAHDLDAAEIYYGLSLQLLIYMGIGLKVCGEKEKA 965 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 FY FK+D ++ S DE+ +K + L ++ N Sbjct: 966 ALPGAAFY------FKMDDPMVEENSISKDEILKKQISEL-KLQGYFLN 1007 >gi|88703286|ref|ZP_01101002.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88702000|gb|EAQ99103.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 884 Score = 157 bits (397), Expect = 9e-36, Method: Composition-based stats. Identities = 102/760 (13%), Positives = 217/760 (28%), Gaps = 93/760 (12%) Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 M ++S LPP + +++ ++ + L R E + A Sbjct: 169 AMDQAVAIMSDDDLPPLHDALCRAAGECHRVAPPRQEGRVLPLRGFSEPRAELQAAARWC 228 Query: 379 RMS-LDENKKKSALITADRNLARRVKLELTR----------FGINIDISAGIPLSTTLHS 427 R L + + A++ +D R R + ++ + G L Sbjct: 229 REQYLKDPGGRYAVVLSDMQNDRDRLEFFLRQEFDCLSKNYASLPVNFATGFRLDRVPLV 288 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 +L + TL++ A R + + Sbjct: 289 RDALRILELSLPEVTVETVITLLQSRFVSPFKIHAEKREASLRRLRELARERVPQHVLHG 348 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + DR V + + + + Sbjct: 349 VLEELFDRSLGAPPWDLVLQRSTNGAWQKRA----------------------------- 379 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 S S W + L L +L +++ + +L + + + + E I Sbjct: 380 RSPSQWLEPFKAILNAWGWPYGTALDSLEYQQAVQWRETLDAFAAQDHVVAELSLAEAIQ 439 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + L+ + +P+ + + + +LG LE+ L FD L + G++ WP NP+L Sbjct: 440 SLRELLGEQQFQPRTDDQA-VQVLGPLETTGLQFDALWITGMSADRWPAAAQPNPYLPHS 498 Query: 668 MQSDLNLKTAEKYIGQ---AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +Q + A+ + A + G + + + + S L Sbjct: 499 LQRQSGMPHADAAWERRWAEARWTQWLQGATEIQISYVNLVDGSEVLPSSLLS------- 551 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + W + +T + P E + S ++Q P+ Sbjct: 552 DGAVTAETSESRPDDRWLTQRAASTFESLALAAVPVSDEERVSQGVGTSVLEQQSACPFL 611 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 +A L +P ++RGTL H + L + + E H + + Sbjct: 612 AFAAARLAATPLPAPVAGLLPSERGTLLHRALYTLWGEIKD---SENLHRIDESELEAVI 668 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + I + + + L+ E++ + ++ + G + Sbjct: 669 DAAVGFALQGIDKARLDVLGGALLDLEQQRLRRVLLRWLEVE---RARDEGFTVVAR--- 722 Query: 905 IDL--------------------LKSGFVDITDYKTGDNPKKET--AQKLIDPQLSLEAA 942 + L G I DYK+G + PQL L A Sbjct: 723 -EEPREHVLGGLRLRLRLDRVDELSDGSTVIVDYKSGSPGSVSQWLGDRPARPQLPLYAL 781 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQK---------FKIDCITNDKKKYSADELSEKSLKN 993 S K + + ++ D + A E + ++L+ Sbjct: 782 LEPFASGIAYASLKPGMEGFKGIGKRAFEAGIASARDHVDDDGDGETQDAPENAMEALRG 841 Query: 994 -LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + + L IS + + ++ + L R+ E Sbjct: 842 HWRKALAELAEEFIGGISPVDPTVEACRYCQRFSLCRLGE 881 >gi|229825743|ref|ZP_04451812.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC 49176] gi|229790306|gb|EEP26420.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC 49176] Length = 1133 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 125/1032 (12%), Positives = 252/1032 (24%), Gaps = 204/1032 (19%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 ++L ++ ++L +K + + + + E S Sbjct: 117 GFTEDLKSLLSEFMQYGITPDNLTKIKEKTSSPVLAAKLQDAALVYRAFNNYKKEKYIS- 175 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ E I G TG P +++ + +L L Sbjct: 176 -AEQILEVLANEISRSKLLENSVICFDGYTGFTPVQLKVIDLL--LVKAEHLLFTLTVSE 232 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + H ++ L +R V + Sbjct: 233 KDYYSEEDEKFRLF----------HLSKDTINKINKLAGER-------GVEVARPVTAEF 275 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 K ++ + V + N REE + + + + Sbjct: 276 CGKVKALSLLERQIFRYPVKKT-----DSENSVRINVCKNPREEVERLIPDILSLVRDEG 330 Query: 387 ---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + A++ D + L+ G+ + + ++ + + L + + Sbjct: 331 LRYRDIAVVLGDMEEYGEMVVDTLSSKGVPCFLDSKKTIADNPFVEYIKASLLVVEENFS 390 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + A+ ++ + E+ I + Sbjct: 391 YDAVMRYLRSGF-----------ANVDVYEVDIFENYILRRGIKGFRRYQT--------- 430 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + S + L V LVD L + K+ L + L Sbjct: 431 SFIKDEASEEESISEGLRVTLVDEFKPLYDILKSKKSKAEDFVKALYEFVSASGSEERLM 490 Query: 563 NVCLDEHR---KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + D + + + + S+F K+ E K + E+ I+ Sbjct: 491 KLSADFEEKGKMIAAREYAGCYRIVMSVFEKMYELLGDEKLSIEEFRSILESGFSEGKAG 550 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------ 673 + I +RL + L G NEG PK+ ++ + L Sbjct: 551 FIPPGLDQIVIGDVERTRLKDIKVLFCLGFNEGKVPKSVGARGIITDTEKEKLAGMNVEL 610 Query: 674 LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI----------------------- 708 TA++ + M T L + S Sbjct: 611 APTAKERAFREQFYIYMLFSKPTERLYVSYSSSNMEGKPIKPSSVINRLRAVFKQEIVSE 670 Query: 709 PTIASRWLQRLLVLGG-TDFFDNLKKRGQ--------------CYLDWTRKLDYTTKQPH 753 PT + + GG +KKR Y D K+ T Sbjct: 671 PTEEVSLINEIRKDGGMELILSAIKKRDLKDSTVINLIKYYNCHYDDRYNKIIEGTVSKA 730 Query: 754 YKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + S + ++ + YA + + L+L F+ D G + Sbjct: 731 HGNSLEKYIATELYGELKGSVTRLELFSSCAYAHFIKHGLRLKERKEFE--LKPMDIGNI 788 Query: 812 FHNIITELIKKRINKNT------PEINHLMKQI-IDSHF--EKENLPPHIDIIWR-HLFH 861 H I+ KK + K E ++ I F + +R Sbjct: 789 LHEILERFAKKVVEKGESFNSISEETREAIQAESIAEAFNYGDDIFNASFRNNYRLTRLK 848 Query: 862 KISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFADRI-----DLLKSGFV- 913 +I+ + S + G G DRI D L G Sbjct: 849 RITDRAVRTVLTQIKSGLFTPVAFEEEFVTK----GF--KGRIDRIDSVLSDYLPDGTRL 902 Query: 914 ---------------DITDYKTG-DNPKKETAQKLIDPQLSLEA---------------- 941 + DYK+G + A +D QL Sbjct: 903 IDSKEFADFNKVRYMRVIDYKSGNKVLDLDRAYYGLDLQLFTYLKYIREEIGKRREYKNN 962 Query: 942 AALKAGS-----------FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + +G+ F + + ++ + + + K D K L + Sbjct: 963 LIIPSGAYYFHIDDPVIDFGGGEEAVIKSMRFDGITLEGKHHISLIDSKIADNSGLVAGA 1022 Query: 991 -----------------------LKNLIEIVTLLQNGEQPFISH-------LRL----SE 1016 + + ++ + F S + +E Sbjct: 1023 DSDVIKLKTKKDGEPSSLTKLYSREEMNALIDNSDLETEKFKSRILKGEITPKPYCLGNE 1082 Query: 1017 KSNIQSEYDHLA 1028 K EY+ L Sbjct: 1083 KGCDYCEYNGLC 1094 >gi|332362565|gb|EGJ40365.1| exonuclease RexB [Streptococcus sanguinis SK1056] Length = 1093 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 119/923 (12%), Positives = 253/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L++ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEDPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILSGDTDEELKNLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAEAEDAFGRISKI 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 ARYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGGLTQEELDHFEQYLRFADIKGSAK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMSPLQDFFKSRSQTASGLLAKFTDFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + ++ EE K S + + + + K +++ +I + + Sbjct: 480 TALLQGASQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPKNQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLL-KSGFV 913 + + S IE I + + + G DRID L K+ + Sbjct: 837 DTARATGRV-LAHPSGIETIGEETGFGSASKPFLILENGRAVTVRGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVSQSMKPLQ 972 >gi|21910049|ref|NP_664317.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS315] gi|28896253|ref|NP_802603.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes SSI-1] gi|81759285|sp|Q8K816|ADDB_STRP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|21904240|gb|AAM79120.1| putative ATP-dependent exonuclease subunit B [Streptococcus pyogenes MGAS315] gi|28811504|dbj|BAC64436.1| putative ATP-dependent exonuclease, subunit B [Streptococcus pyogenes SSI-1] Length = 1071 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 135/986 (13%), Positives = 276/986 (27%), Gaps = 140/986 (14%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L+ L +I+ L + + P S + L ++ ++ + Sbjct: 75 SPSKQHLDDTTLAMIFYRALMQLKPEDLPSYGRLQNNSV-----FIEQLVELYKELKNAQ 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 DL L D +KI T + + A Sbjct: 130 LSVHDLTGLD------HPQKQEDLIKIIELAETIMIQQDYNQDSPLQSFARAIKLGLLNN 183 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + +K ++I G + L+S + N+ I+ + + I Sbjct: 184 QLSKTVVVIDGFSRFSAEEDYLLSLLNNNCQEVIIGSYVSQKAYQKSF---------IKG 234 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + S H LA+ ++ + V +F D Sbjct: 235 NIYEASLHFLQDLAQ--------------KYHIKPVFATSNQVFKPAFSRLTQLFEATHD 280 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + + +L + +++EE +A ++R L E + ++ ++ Sbjct: 281 FSQVDWQLQKNDLDHFSLWQCHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQL 340 Query: 404 LE---LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 +F I + P++ + SL + I ++K L Sbjct: 341 QIGPIFDKFEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD 400 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 D+ ++ + Sbjct: 401 -------------------------SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPL 435 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---VTCLQNVCLDEHRKLPNLWF 577 L + + PL ++ S+ D L + +N+ +L Sbjct: 436 DFLNEMRQDIVLPLQELFKSQKQLGA--SLVDKLILFLKKIRLAENMQGLAQSQLEVEKN 493 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE K + + + K + + +I + + + I + Sbjct: 494 EEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYDLVQ 553 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AH 686 + + GL + +PK + LS ++ +N ++ A A Sbjct: 554 PHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIASAENSKKNHQTAL 613 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT--------------------- 725 A T+ L+ + N S +L+ L+ G Sbjct: 614 SLFNA-ATKELVLSVPTVINETFDDLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKA 672 Query: 726 -----------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF-------------- 760 D + + + R L ++ + P Sbjct: 673 LLSQIIAINRQDLIEMSDQDKMFWTVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIE 732 Query: 761 -PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + P S + + N+ Y + + +L L+ PD G H + L Sbjct: 733 VCFPKRIPLKLSATALTVFYNNQYNYFLKYVLNLNKTESIH--PDSRIHGQYLHRVFERL 790 Query: 820 IKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 +K + +S F++ + I S ++ + Sbjct: 791 MKDHTQEPFDNKLKQAIYHTNQESFFQQIYQDNAEAEYSLAILEDIVRST-APILQLNQN 849 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQ 936 I+ I + + I + G DRID L G + I DYK+ N T + PQ Sbjct: 850 IQVIDQEKNFHLDM-GNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGTFYNGLSPQ 908 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L AALK + I+ ++ Y+ L Q K+D +T + + E K+L Sbjct: 909 LVTYLAALKQITPHDIN--QLFGAMYLHL-QDPKLDLVTFKQIDNTLVESIYKAL----T 961 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQS 1022 + E+ +S K+ + S Sbjct: 962 YKGIFSEVEKEHLSTGAYQTKNALYS 987 >gi|322376657|ref|ZP_08051150.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334] gi|321282464|gb|EFX59471.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334] Length = 1108 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 113/931 (12%), Positives = 240/931 (25%), Gaps = 145/931 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L ++ I T + + DL +L +E + + Y + Sbjct: 127 QDPQFIQQLIELYHEIATAQMNFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----G 178 Query: 204 ASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + T+ ++I G T R++ + ++ Sbjct: 179 QLAQGSQLSHLIEAIEDDKVSSDFTQIALVIDGFTRFSAEEERIVDLLHGKGVEIVIGAY 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + ++ + H E + S + Sbjct: 239 ASKKAYASPFREGNLYQASVEFLH-----HLASKYQTPAQDYSQTHEKMDSFDKASRLLE 293 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + D E + +K ++ + ++EE +A ++R Sbjct: 294 ------------------SSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQK 335 Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L N L+ + +K ++ I + ++ + + S+L Sbjct: 336 LHANPDLSYKHFRILLGDVPSYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILAL 395 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + N DI + + Sbjct: 396 KRYRFRQEDLINLLRTGL----------------------YTDLNQSDIDAFEQYIRYLG 433 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 +S + E L IL + L T + K + Sbjct: 434 INGLPAFQQTFTKSHHGKFSLERLNALRLRILTPLETLFTSRKQKTENLLQKWNVFLKEG 493 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 VT L E K + + + + + +++ ++ + Sbjct: 494 AVTKQLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLS 553 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + T+ + L D + GL + PK L+ + +LN +T Sbjct: 554 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQNLNQET 613 Query: 677 AEKYIGQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 E A + + L+ + N + S +LQ L+ G + Sbjct: 614 EEGAQLLIASSENLKKNRYTMISLVNSARKQLVLSAPSLFNESESKESTYLQELVHFGFS 673 Query: 726 DFFDNLKKRG-----------------------------------------------QCY 738 + +G Q Sbjct: 674 RREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSETEQDLTFVKVLARVMGKKLNQHG 733 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 L + +P K Q S S + + + Y+ + R +L L Sbjct: 734 LANPALPTSPSSKPLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EE 791 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856 + PD G H I ++ + Q + FE Sbjct: 792 LRLRPDARSHGNFLHRIFERALQLPDEDSFDHRLEQAIQETSQEREFEAIYQESLEAQFT 851 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 852 KEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRLK 910 Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 G + + DYK+ Q ++ QL AALK Y+ Sbjct: 911 ADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYL 961 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + L Sbjct: 962 EMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 992 >gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS] gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS] Length = 1091 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 125/1050 (11%), Positives = 257/1050 (24%), Gaps = 140/1050 (13%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N V T++A Sbjct: 21 DEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITGKKSTILPIIKS-LGDVV-------EEKFTADLLLSYNLNPPVSNIQRL 109 + +R+ ++G + ++P I LG F LL + L P+ RL Sbjct: 81 RRVRTRLARLSG--AGLVPGIGPGLGATDDPPTVSTYHAFAGMLLRDHGLLLPIEPETRL 138 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKW 166 L L + + + L E + + LA LA+ + D + + Sbjct: 139 LGETELWQLAHRVVCEHPGPL--EIDKTPAAVTDMVLRLAGQLAEHLVDTDELRDTHVEL 196 Query: 167 EDLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIA 213 E L + L R+ A Sbjct: 197 ERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELIPLVDALHRRMQSEKVMDFGMQMAA 256 Query: 214 LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHI 266 R A H + +++ + A +S + +G + D Sbjct: 257 AARLAAAHPQVGAELRARYRVVLLDEYQDTGHAQRVALSALFGGGVDDGLALTAVGDPIQ 316 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 W + + +++ S + +L + VS E RS+ Sbjct: 317 SIYGWRGASATNLPRFATDFPLSDCTPARVLELRTSWRNPPSTLHLANAVSAEARQRSVA 376 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + P L + + + +D D R E DE Sbjct: 377 VRSLRPRPGAEPGTIRLALLDNVAAERDWLADEVARRYDAARAE------------DEAP 424 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +A++ A + LT G+ +++ L + + ++L + A Sbjct: 425 PTAAVLLRRNADAAPMAEALTARGVPVEVVGLAGLLGVAEVADVVAMLRLVADPTAGAAA 484 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 V P + G + + G + + + ++ A + P Sbjct: 485 MRTVTGPRWRLGGRDIAALWRRAVELDDGGPGPEATAAEIVARAAPDADAACLADAICDP 544 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 R S E V L + L + + + D Sbjct: 545 GPAERYSPEGYRRIVALGRELTSLRGHLGIALPDLVTEVRRVLGVDVEAR---------- 594 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 E + + + + ++D +G + Sbjct: 595 AAMPVPAGWSGTEHLDAFVDVVADYAGRPGATISGLLAYLDAAMERENGLAPADLAVSTE 654 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674 + IL ++ L + + + L+ ++P +L+ L Sbjct: 655 RVQILTVHAAKGLEWQVVAVPHLSGRIFPSTAQARTWLTDPADLPPLLRGDRATTTDHGV 714 Query: 675 ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + + + + Sbjct: 715 PVLDTSDVNDRKILSDRINDHKRHLEQRRVDEERRLLYVALTRAEDTLLLSGHHWGATEA 774 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 P S +L+ L + + +P A Sbjct: 775 KPRGPSEFLEELKDIIDRAEQAGQPCGVVDQWAPAPAEGEKNPLRDNVKEVLWPADPAGG 834 Query: 768 RTYSFSEIKQLINDPYA-------------------VYARRILKLDFIPHFKKDPDRTDR 808 R + QL+ A + R + + Sbjct: 835 RRAAVDRGAQLVARAMAGAVETVQDVDGWAADVDALLAERERAAQKPPLTLPAEVSVSTL 894 Query: 809 GTLF---HNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKE----------NLPPHID 853 L +++ L ++ + P + + +F E + Sbjct: 895 VNLSNDPDAVLSRLNRRVPTRPDPNASLGTAFHDWVQRYFGAERLFDLDDLPGAVDSDFR 954 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 ++ SF+ + I V +P M I + G D + G Sbjct: 955 RTEAEQLTELQTSFMLSPWAAR---TPIDVEVPFDMVIGET--MVRGRIDAVFADDDGGA 1009 Query: 914 DITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 I D+KTG P +A + QL++ A Sbjct: 1010 TIVDWKTGAAPDTPSAAEHAAIQLAVYRLA 1039 >gi|312129740|ref|YP_003997080.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM 17132] gi|311906286|gb|ADQ16727.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM 17132] Length = 901 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 67/446 (15%), Positives = 141/446 (31%), Gaps = 40/446 (8%) Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + + + + + G ++ + E ++ + I+ LE+R L+FD + EG P Sbjct: 448 RHLDVSKPAFRLLFQEFLKGLSLPFEKEPNAKVQIMSMLETRCLDFDEVTFLSFVEGKLP 507 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN--IPTIA 712 N FL + L T A+ F + + + Sbjct: 508 TANKSNSFLPFDAILEFKLPTYSDQDAIMAYHFYRLLQRAEKVNILYVQQGGSGVGRQEK 567 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP--FPPLEAQPRTY 770 SR++ ++ D + K + L + K + R Sbjct: 568 SRFIYQIEEELCRDPKVDGKIKFSTTEINLGDLVKPKEITIPKTDEILEKAKDYFTNRGL 627 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-----LIKKRIN 825 S + + + P A Y + + + + GTL H + + + K Sbjct: 628 SATALSEYFTSPLAFYWKYLEGIRENNMDEATIGANVFGTLIHYALEKADLPYVGKSITK 687 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQ---SSIEK 880 ++ + + D ++ + K++ L + +I+ Sbjct: 688 EDLEAQKLWVIKNFDQLIQECKPEFDFSYGLNAVLKKVALDLLIKYYHMRIRTYTEPFTI 747 Query: 881 IFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------------ 926 + + + + I I + + G D+++ + I DYKTG Sbjct: 748 VALEKKFRKILDIGGIKLKVEGAIDKLEKHGD-TLVIIDYKTGKVEDVTYTHNPEVSFTE 806 Query: 927 --ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 + ++ QL L F I +V + Y + D I + K S + Sbjct: 807 ELKERKRDKFRQLLLY--------FFLIHSEEVPDAKYGFYSFRALNDRIDMEVKGLSKE 858 Query: 985 ELSEKSLKNLIEIVTLLQNGEQPFIS 1010 EL + E+V + + E+PF + Sbjct: 859 ELLSGIQGLIEEMVLEVLDKEKPFSA 884 Score = 79.2 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 73/276 (26%), Gaps = 27/276 (9%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 G + L + I +P++RA E ++ P I S+ D ++E Sbjct: 7 GRAAAEVFQSAKDLSDLQKLHIVLPSRRAALYFGRELASLSAI-PFFAPKISSIDDFIQE 65 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP----A 143 L+ S +L + W+ + + + +L + Sbjct: 66 TSGLQLIKSVDLY------------FEIYKEWKQLDGSLTLEHFLTWVPTLVKDLNLIDS 113 Query: 144 NAIWLAKNLADIIDI---IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + + K L +D ++ E + + + + ERL Sbjct: 114 SLLDDTKGLFTYLDQADALKRWGINAE---NNVVTDFAGSYFSFFKKMGLVYHTLRERLA 170 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + K I G A ++ + + A + Sbjct: 171 AKGVGYSGLLYRTAAEKAIDKEWKEDFYFI---GLNALSTAEEVIIKHLVHIGK-AKCIW 226 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 D + + + +S + Q SL Sbjct: 227 DTDDYYMESKDKAGRKLRKYKSSRLFGKEWYFQESL 262 >gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 1175 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 112/1068 (10%), Positives = 265/1068 (24%), Gaps = 181/1068 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------------EE 87 V T++A Q+L + + I +L D+ + Sbjct: 162 QVLGLTFTRKAAQQLSQRIRQRLETLAG----IPTLRDLDPSGGIARSLQAITPTVSTYD 217 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + LL Y L PV RL+ L I R + + +L + Sbjct: 218 SYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEY----- 272 Query: 148 LAKNLADIIDIIETEEKKWEDLHAL--------------------KNEKYGMWW--LLAA 185 L D++ ++ +++ ++ W + Sbjct: 273 ----LLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITR 328 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240 + + L + + R + H + +++ + Sbjct: 329 LQYLPLVEQLKQELHDRAVITFGEQMSKAARLASRHPQVGYSQRRRFRVVMLDEYQDTSH 388 Query: 241 ATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 + L+ ++ + G V D W T + + Sbjct: 389 SQRVLLRSLFGGTDPGLTVTAVGDPMQAIYGWRGATAANLENFVGDFPV----------- 437 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + L + + T ++ P +V Sbjct: 438 ISLDARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAPTGEV 497 Query: 360 ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417 + +EE +A L+ D + +A++ R + + EL GI ++I Sbjct: 498 QIGWFATAQEERAFVADELKKYWDARSEKFTAAVLVRKRRHSEPMAAELRARGIPVEIVG 557 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK-------FGFPEKYLSRAKNA 470 L + + ++ + + D A ++ P + Sbjct: 558 LSGLLDVPEVADMVAIATMLVRPQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVR 617 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-------------- 516 + + L + + D + T+ E Sbjct: 618 PGSPKEKEPLPEEPLERLAAQIADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRL 677 Query: 517 ----------------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 ++ + + L + G + + + Sbjct: 678 AAQLRHLRTNSLGHSVADIFADIEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAH 737 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---------------ETGSCIKANAIEW 605 + +E+G + + + S + A+A + Sbjct: 738 SSVSLPELLDYFQLARDQEDGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTY 797 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + P + L++ + + E ++ S Sbjct: 798 DAKAFTWLKNVKHIPSSLRGDAGEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENS 857 Query: 666 RVMQSDLNLKTAEKYIGQ---------------AAHDFEMANGTRHLIYTRSLRENN--- 707 R+ + + +E+ + AH + + T E Sbjct: 858 RLFY--VGITRSERALMVTGSAIDGTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVE 915 Query: 708 ---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFP 761 + + + +L +R + Sbjct: 916 KLPAEEAMYPAVTIPPGVAEGAELVRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPT 975 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 R + +++ L N+P ARR+ + RGT FH + + Sbjct: 976 LEVEISRELTATDLVNLKNNPEQF-ARRLRRPVPFKPNTY----AKRGTQFHQWLEDRFG 1030 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++ + +++ + FE+ E + Sbjct: 1031 ASALLDEDQLPGMDEELSEQTFEELR--------------------AAFLESRWADRTPN 1070 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +V P ++ I + G D + + D+KTG P+ I QL++ Sbjct: 1071 YVEHPFEVVI--GRHVIRGRMDAVFHEPDDTWLVVDWKTGQTPRGAEMDAAII-QLAVYR 1127 Query: 942 AALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSE 988 A S ID ++V F Y+ F+ D + + + + ++ Sbjct: 1128 IAWA--SLRGIDPQQVRGAFHYVAHNHTFEPDHLPDAGELALLLDGAQ 1173 >gi|331268545|ref|YP_004395037.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum BKT015925] gi|329125095|gb|AEB75040.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum BKT015925] Length = 1146 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 109/954 (11%), Positives = 244/954 (25%), Gaps = 142/954 (14%) Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIAS 192 S L + + AN N++DII ++ + +L A L + + + Sbjct: 115 SDLKIFGTAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKIIDISNIF 174 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + + E L + + L+ + + I I + P ++ + Sbjct: 175 EEFEENLHKNYIDNEDEL--TLLCKKLDESEMYNGAEIWIDEFSSFTPQQYKIFEKLIKK 232 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V +D + + T Sbjct: 233 VKRINVTLCMDYYKQIDSTDVFAPTKNTEQKLIKTLED---------------------- 270 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 G ++ + F + + + ++ +I A N E Sbjct: 271 NGIPIDKPIILNNTNLDRFKDNEEMRFVEENYFKYPYKPYTDKTENIKIIRAVNPYSEIE 330 Query: 373 SIAIALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSS 428 +IA + D ++ A+I+ + + ++ + I I + Sbjct: 331 NIAKEIVKITKDTDIRYREIAVISRELDGYEKIVKTIFNEYEIPHFIDKKKEVDDNPLIV 390 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++TS++ K + ++ +K LA + L + + +S Sbjct: 391 LITSVIEIFNKSWSYESMFRYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWSSIWEYGN 450 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + S N Sbjct: 451 EEILEKINDIRIKVSEPLIKFYSKIKGK-----------TNAEEICTAVYNFLCSIGVNE 499 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 +I W + + + + + L +++E K +++ I Sbjct: 500 AIEKWVYKFKE--------DGNQQLVKEYSQIWNIVIELLDQVVEVFKEEKLELKDFVKI 551 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 ++ + + + R L + G+N+G++P + LS Sbjct: 552 LSLGFKDHKMGLIPPSLDQVLVSAVERVRTHQIKLLYIIGVNDGIFPAISKNEGILSDSD 611 Query: 669 Q---SDLNLKTAEKY----IGQAAHDFEMANG-------------------TRHLIYTRS 702 + + ++ AE + + +I TR Sbjct: 612 RGYLKKVGIEIAEDTKSKAFEEQYLIYRTLTTTEKYLRLCYSIADYEGKALRPSIIITRF 671 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 T S + + + R+ D K + Sbjct: 672 KALFPSITEESDNILEEDNKQDIELISREIPTFNSLVSVIRREDEKIKVHPFWSDVYKWY 731 Query: 763 LEAQPRT---------------------------------YSFSEIKQLINDPYAVYARR 789 E S S +++ P+ Y + Sbjct: 732 SENPNWKEKVSTVFSAVSYTNAVNDISEEKVRKLYGNRLYLSVSRLEKYAQCPFGYYIKY 791 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------IKKRINKNTPEINHLMKQII 839 LK F D GT HN+I E + + + + Sbjct: 792 GLKAKERKLF--ALTPPDLGTFMHNVIDEFSETVDKNCLKWYEIHKEWCEKTVSEIVDRK 849 Query: 840 DSHFEKENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA--------- 887 + ++ + E +S + I I Sbjct: 850 SIEVSGGIFNSSPRYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEIGFGNEESYPPI 909 Query: 888 KMAI-ESIGIHLTGFADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEA- 941 ++ + + L G DR+D L I DYK+G + + QL Sbjct: 910 EIELSNGEKVKLIGRIDRVDKLDMDNKDYYRIIDYKSGNKDFSLSDVYYGLQLQLLTYLD 969 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A L + + + Y+++ D I K+ S +E+ ++ +K L Sbjct: 970 AILTNEEIKEKEPVVPGGVLYLKID-----DPIIKGKRNLSDEEIEDEIMKALK 1018 >gi|195977956|ref|YP_002123200.1| ATP-dependent nuclease subunit B AddB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974661|gb|ACG62187.1| ATP-dependent nuclease subunit B AddB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1104 Score = 157 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 130/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E L + L ++ ++ DL L + D + I Sbjct: 129 QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 182 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 +K E+L+ L A + + ++I G T +L++ + Sbjct: 183 TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 240 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ +I + K +S Q K + Sbjct: 241 NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 287 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + + R + ++ D + + + S V + +A N++E Sbjct: 288 YTTSEKVFDVSFSRLTQLLEANHDYSQLDWQLSAKDK----------SKVVIWQALNQKE 337 Query: 370 EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E + A+R L + + L+ + ++ +F I I P+S Sbjct: 338 ELEHVTKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 397 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL I L+K L E L + + L ++G Sbjct: 398 VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 456 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L S + + + + ++L + L+T+ Sbjct: 457 TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 510 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +++ R+ EE KT + + + K + + Sbjct: 511 FEALA---------------GSRREADREKDEEVWKTFTGILETFYQVFGQEKMTLADCL 555 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +I + + + I + + GL+ +PK T +S Sbjct: 556 ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 615 Query: 667 VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 + L++ + E K Q A A T+ L+ + N S Sbjct: 616 QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 674 Query: 715 WLQRLLVLGGTDFFDNL------------------------------------------- 731 +L+ L+ LG Sbjct: 675 YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 734 Query: 732 -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 ++ L + T +P QP + S S + N+ Y + Sbjct: 735 LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSQQPLSLSSSALTVFYNNQYKYF 794 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844 + +L L PD G H I + K R N + ++ F+ Sbjct: 795 LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 852 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + I++S Q ++ ++A+ + + G DR Sbjct: 853 QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 910 Query: 905 IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ID L G + I DYK+ + PQL AALK + + Y+ Sbjct: 911 IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 964 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +++ D+L + K L + + ++++ + + Sbjct: 965 HMQEPRLSLSDFK----VLDDQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 1017 >gi|307708678|ref|ZP_07645141.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261] gi|307615252|gb|EFN94462.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261] Length = 1091 Score = 157 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 122/985 (12%), Positives = 255/985 (25%), Gaps = 155/985 (15%) Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 A L+ +L +S + + P ++ Sbjct: 66 MARYLILNDLPAKIS-LDDIGLGMAFYRCLTELDPKDLRVYGA---------IKQDPQFI 115 Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + L D+ + + + DL +L +E + + Y + + Sbjct: 116 QQLIDLYHEMTKAQMSFVDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGS 167 Query: 210 YQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 L+ A + T+ ++I G T R++ + H G ++ G Sbjct: 168 QLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLL--HAKGVEIVIGAYVSKK 225 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + S + H + Y ++ Sbjct: 226 AYT----SPFSEGNLYQASVEFLHHLA-----------------FKYQTPAQDYSQTHEK 264 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--- 384 SF + D E + + ++ + ++EE +A ++R L E Sbjct: 265 MDSFDKASRLLESSYDFSELSLEIDDRDRENLQIWSCLTQKEELELVARSIRQKLHENSN 324 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ + +K ++ I + ++ + + S+L Sbjct: 325 LSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFR 384 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L++ L + + DI + + Sbjct: 385 QEDLINLLRTGL----------------------YTDLSQADIDAFEQYIRYLGINGLPA 422 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 +S + D L I+ + L + K + VT Sbjct: 423 FQQAFTKSHHGKFDLGRLNALRLRIVTPLETLFASRKQKAENLLQKWNVFLKEGAVTKQL 482 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L E K + + + + + +++ ++ + + Sbjct: 483 QDLTATMKVLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIP 542 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 +T+ + L D + GL + PK L+ + LN T E Sbjct: 543 ATVNTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGVQL 602 Query: 683 QAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-------- 723 A + + M + + LI + N + S +LQ L+ G Sbjct: 603 LIASSENLKKNRYTMLSLVNSARKQLILSSPSLFNESESKESAYLQELVSFGFSRREKRM 662 Query: 724 --------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYK 755 G L +KLD + Sbjct: 663 SHKNLSKEDIGSYHSLLSSLVAYHQQGEMSETEQDLTFIKVLARVMGKKLDQQGLENPAL 722 Query: 756 RPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 P Q S S + + + Y+ + R +L L + PD Sbjct: 723 PTSPSSKPLAKDTLQALYPAEQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPD 780 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHK 862 G H I ++ + + Q + FE + + Sbjct: 781 ARSHGNFLHRIFERALQLPNEDSFDKRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLD 840 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914 ++ + H + +IE I + ++ + + G DRID L G + Sbjct: 841 VARTT-GHILRHNPAIETIKEESNFGGKEQAFIQLDNGRSVFVRGKVDRIDRLKADGAIG 899 Query: 915 ITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 + DYK+ Q ++ QL AALK Y+ + + Sbjct: 900 VVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPV 950 Query: 970 KIDCITNDKKKYSADELSEKSLKNL 994 + + + L Sbjct: 951 QSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|324991606|gb|EGC23539.1| exonuclease RexB [Streptococcus sanguinis SK353] Length = 1093 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 122/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELKTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAESYQVKPDYIPH------------A 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 +F D E + + S + + N++EE +A ++R + + Sbjct: 262 EAEDAFGRISKILESRYDFSEPAVAVSETDRSRLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + + I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDHYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTGL----------------------YGDLTQEELDYFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTCL 561 + + D + + I+ + ++ + + L Sbjct: 420 LAKDFTANSQGKFDLDHLNHIRRRIMTPMQDFFKSRSQTASGLLAKFTEFVQIARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + ++ EE K S + + + + K +++ +I + + Sbjct: 480 IALLQGDSQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAE 598 Query: 682 GQAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q A + T+ L+ + N + S +L L Sbjct: 599 LQIASSENLKKNRYTALSLINSSTKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQPETLQALYPQEQPLRLSASALNEYFLHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 D G H I ++++ + + + ++ FE R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSRETEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + H S IE I + +E + ++G DRID L K+ + Sbjct: 837 DTARAT-GHVLAHPSGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLADAVNQSMKPLQ 972 >gi|328946441|gb|EGG40581.1| exonuclease RexB [Streptococcus sanguinis SK1087] Length = 1093 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 129/922 (13%), Positives = 253/922 (27%), Gaps = 135/922 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L E + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNEGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+S + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYLVSLLHR--KGVEIIIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISKI 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L EL DI L D A + Sbjct: 382 LEDLLNLLKTGLYGD----------LTQEELDHFEQYLRFADIKGASKLAKDFTANSQGK 431 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + L L + + + +++ + Sbjct: 432 FALDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAASLSDNLTALLQ------- 484 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + EE K S + + + K +++ +I + + Sbjct: 485 -----GASQQEQERHEEVWKAFSHVLEQFAQVFVDSKVKLDDFLALILSGMLLSNYRTVP 539 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L + GL + +PK LS ++ LN T + Sbjct: 540 ATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAEL 599 Query: 683 QAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV---------- 721 Q A + T+ L+ + N + S +L L Sbjct: 600 QIASSENLKKNRYTALSLINSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVK 659 Query: 722 ---------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP 759 L + Q + R L P+ Sbjct: 660 KPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISMPRI 719 Query: 760 ---------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + QP S S + + YA + + +L+L + PD Sbjct: 720 SKVLETESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHPD 777 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHK 862 G H I ++++ + + + ++ FE R L Sbjct: 778 ARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSRETEFESIYSESGQTRFARQLLLD 837 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914 + + S IE I + +E + ++G DRID L K+ + Sbjct: 838 TARAT-GRVLAHPSGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESLG 896 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 897 VVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----DP 950 Query: 974 ITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 951 IVALKDTKTLTDAVNQSMKPLQ 972 >gi|25027346|ref|NP_737400.1| putative helicase [Corynebacterium efficiens YS-314] gi|259506515|ref|ZP_05749417.1| helicase [Corynebacterium efficiens YS-314] gi|23492627|dbj|BAC17600.1| putative helicase [Corynebacterium efficiens YS-314] gi|259165935|gb|EEW50489.1| helicase [Corynebacterium efficiens YS-314] Length = 1024 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 130/1036 (12%), Positives = 281/1036 (27%), Gaps = 164/1036 (15%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGD 83 ++ +++ +S+ I +K A LR E E+ + P+++S+ Sbjct: 53 VSSLVIDTVVERIRQGWDPSSILIVAASKEAASRLRRELSELVSDLDYVSEGPMVRSVHS 112 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + RL+ A + R L D P Sbjct: 113 LAFALIRDSCDEDV----------RLITGAEQDAVVRELLRGHADDDRGVWPPEQREGLR 162 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + A+ L D + +DL + W+ A +FL+ + Sbjct: 163 -MVGFARQLRDFLLRAVERGVGPDDLVRYGQQYNRPAWVSAGEFLREYQQIMRLAGSHSY 221 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 ++S + A A + T + + + P +A L++ A++ D Sbjct: 222 SASE-----LVTGALACGDPRTTYRGVFVDDAQHLDPKSAELITRFIPAAELAVI--AGD 274 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + +N + L R V+ Sbjct: 275 PEQSVFHFRGANPDFLLDFEANRSIH-------------LGEGRRTPLISIAVTETASAH 321 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + +++ + D + IA+ +R + Sbjct: 322 NDLLADTVRRAHLLDGVDWSD-----------------------------IAVIVRSA-- 350 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFKLND 442 + V+ L G+ + IS + LS + + L A+ + Sbjct: 351 -------------GMIAPVRRVLLAAGVPVHISPTDVVLSEQRIVAAMILGLRALTEELT 397 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + L+ P+ L R L +R + + I L+ L+ + Sbjct: 398 PLELEDLLLGPIGG--ADPVTLRRLLRGLRQAEMRADGHRRAIEVLRGLL-----NTDAD 450 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + + E E ++ + + + + + + Sbjct: 451 EELLAFLTDRELELLERVRSVLRAGREAMAG----GSTEEILWAVWEATGLSSHLSAVSL 506 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + +L + + + T + I + + + + Sbjct: 507 RGGAAGSQADRDLDAIMALFDAAGDYVERYPTAGIRSF----IVHISEQELPTGVRERRG 562 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---- 678 + + + + +I+ + EG WP L + DL + + Sbjct: 563 VSPEAVTVTTAHATTGREWRHVIVAEVQEGSWPSLGETGTLLGQEELIDLLDENIDPDTI 622 Query: 679 -----KYIGQAAHDFEMANGT--RHLIYTR-SLRENNIPTIASRWLQRLLVLG------- 723 + + F +A L+ T + +++ SR+L+ L Sbjct: 623 ISRSVDRLAEERRLFHVATSRACDQLLVTAVNTPDSDEVREPSRFLEELAEAHRVEITHI 682 Query: 724 ---GTDFFDNLKKRGQCYL---DWTRKLDYTTKQP------------------HYKRPKP 759 G + G L +L P P Sbjct: 683 EGPGETPLAEPEVLGHRLLSVPALVAELRRVVTDPGELGSRRRQAARQLNRLAGAGIPGA 742 Query: 760 FPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P R S S I+ L+N P R + + P Sbjct: 743 DPDTWLALREPSTTAELIPEGRVWLSPSRIEALMNCPLRASLDR------LDSEDETPIA 796 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGTL H + + + + + +++ + N+P F + Sbjct: 797 MLRGTLVHAFAEAVARG------ADPERAGEMVTEAYMDLANVPSWSRETTEQDFRRTIT 850 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 + + + + + + ++ I S + + G DR++ +G + I D KTG Sbjct: 851 RTHTWLQTSRVTFDLVGTEMEVEVGI-STEVGIRGRMDRLERNHAGELVIVDLKTGR-QA 908 Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 QL+ AL G A + +D K + + Sbjct: 909 AVQKDMGEHAQLASYQLALSRGVLHGDRVEDPAPGETPEPVGGGVLVYPAHDAKGITTRD 968 Query: 986 LSEKSLKNLIEIVTLL 1001 + K+ + L E+ LL Sbjct: 969 QAAKTPEELDELAALL 984 >gi|257875816|ref|ZP_05655469.1| exonuclease RexB [Enterococcus casseliflavus EC20] gi|257809982|gb|EEV38802.1| exonuclease RexB [Enterococcus casseliflavus EC20] Length = 1205 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 112/947 (11%), Positives = 235/947 (24%), Gaps = 143/947 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVEL--N 203 + L + T EDL A L + + + L+E Sbjct: 121 GFIQQLLAFYQEMHTSRLGIEDLLAGGTAPSATQDEEKKYSELAKIFQRFEQELLERALQ 180 Query: 204 ASSPVGYQIALMR----------------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 P+ + + II+G + +L+ Sbjct: 181 VEQPITLLTRFLEGSLLDDSPVEQAMPNAVSMNKAPDLSHALFIISGFSAFSTQEQQLIQ 240 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + I L LD P E + + T+ Q L + Sbjct: 241 VLMKKSHVIIDL-FLDRGYPQ-------ELPSPLNLFYEAGRTYYQ--LISFARENQVPI 290 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++L + +++ +T + + + + K F V + N Sbjct: 291 YLDQKLSVNQEVDKEAKGSMQQAYNEIETFWRQTQSQVNYQQQSSVKDFLAVWKVG--NP 348 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419 EE IA ++R + + K+ AL + L + + T F I I Sbjct: 349 EEEIRQIAASIRGMMSDKKRYPALRYREIQLLIAEPEIYHQYIPKIFTEFEIPFYIDEEQ 408 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470 ++ L + I L++ L A + + + Sbjct: 409 MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 468 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E AL + + L + + + + + V L Sbjct: 469 TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 528 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 +T T + L + + E+ + L L + Sbjct: 529 LTAARTNRDAVELLYRFLLNAGVEEQLRHWRDQAIQQGKLDQAR-NHEQAWQALMDLLDE 587 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + D++ ++ T + I +R GLN Sbjct: 588 YAAIYGEESFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 647 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699 E P+ L+ + N + + A + + T HL Sbjct: 648 ETALPRKIENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 707 Query: 700 TRSLRENNIPTI-ASRWLQRLL---------------------------------VLGGT 725 + ++ + I S +L R++ Sbjct: 708 SYAVNFDTQQNIKMSPYLDRVVKRLDVPLQERGILTLVSDPRNYVGSYRGLIYQINNLSQ 767 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770 N + + + + L + + P P +AQ Sbjct: 768 QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 827 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827 S S+++ Y + L+L + G FH+ + +K I +N Sbjct: 828 SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 885 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877 T Q ++ ++ ++ L + + Sbjct: 886 TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 945 Query: 878 IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921 + + + +++ G DR+D + + DYK+ Sbjct: 946 FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLYVRGKIDRVDTAKTEEEQWLSVVDYKSS 1005 Query: 922 DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + QL A A + A +Y+ + Sbjct: 1006 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPNVRPAGAYYLHV 1052 >gi|300215189|gb|ADJ79605.1| ATP-dependent helicase/deoxyribonuclease subunit B (ATP-dependent helicase/nuclease rexB) [Lactobacillus salivarius CECT 5713] Length = 1193 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 108/973 (11%), Positives = 263/973 (27%), Gaps = 148/973 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + + R + ++L + ++ +S + + D I+ ++ E+L Sbjct: 100 MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227 + I + + + + + ++ E + Sbjct: 154 SQQDTAD-SAELEAKLHDIAIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 II G + ++S + + L+ + +++K + S T Sbjct: 208 SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTDI--EDLSDKQSLFYRSERT 265 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 Y Q + + L+ R + L + + L+ Sbjct: 266 YYLLYQQARKAQVKILN-----------DVYPQELRVETLELQSLAKY---WKESTDLKP 311 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404 ++ +I+AD E IA ++ + D L+T D N R + Sbjct: 312 INVEKIGDNHNLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371 Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458 + + I + + +LT+L N ++ + L+K L Sbjct: 372 PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKAHHYRYVDMMRLLKTELLIPKTEYGY 431 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516 K + + E + L+ + V R T V ++ Sbjct: 432 LEIKQFRQDLDLTENLILKFGLEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + ++ + + K L + + + L++ + Sbjct: 492 RHYIKEILPPFFKQLDKAENGKEAAQILMNFLITNGVPEQLINWRNK-ALEQGDMVMADC 550 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E+ +L + ++T + ++++++ +G T + + I T + Sbjct: 551 PEQVWNLFCALMDEYVDTLGDLSFKEEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686 ++ + + G + V P L+ + + + EKY+ A Sbjct: 611 QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670 Query: 687 -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737 L ++ N S ++ R++ ++ + Sbjct: 671 NYLAFMTPRERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANSEPTLEDKKVLKF 730 Query: 738 ----YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768 + + + K+P P + Sbjct: 731 VATKRTALSNLIGVARQAKGQKQPLPVMWRYVYQKLQEDATYRRLTRKLMAGIEYSNIPE 790 Query: 769 ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S S+ ++ + YA + + LKL F+ + G +H Sbjct: 791 RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848 Query: 814 NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866 + +L+K + + P I+ I Sbjct: 849 MALDKLLKTLKQDKVSIADINKPQLDAYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908 Query: 867 ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907 + H + ++ + + + +++ G DRID Sbjct: 909 TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968 Query: 908 L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955 + + I DYK+ + + A + Q+ L + +I Sbjct: 969 MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025 Query: 956 KVANLFYIRLKQK 968 K A Y+ L+ Sbjct: 1026 KPAGAVYMHLQNP 1038 >gi|255535481|ref|YP_003095852.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium 3519-10] gi|255341677|gb|ACU07790.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium 3519-10] Length = 911 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 87/450 (19%), Positives = 165/450 (36%), Gaps = 48/450 (10%) Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + +I +L++ ET+ + E L ++G LE+RLLNF+ +IL NEG P Sbjct: 460 FPVSMETLEVLINQLVNSETIDFQGEPLEGLQVMGLLETRLLNFENIILLSANEGKLPLG 519 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRW 715 +N +L ++ NL T + A+ + + +L SR+ Sbjct: 520 NTQNTYLPFDIRRHFNLHTFLENDSIYAYHYYRLIQESQNVHLLFNALNSGVNTGEKSRF 579 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 + ++ + N+ + + K PK LEA S S + Sbjct: 580 ITQMEIEDRHHQITNVIIENAADPILQKPMHI------AKTPKVIEILEAWKARISASHL 633 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPE 830 I +P Y +IL +++ + G L H + ++ +K + K+ Sbjct: 634 TSYIYNPADFYLNKILNTREADEMEEELSQRSYGNLVHYALQDIYEKFVGKTLTVKDLDL 693 Query: 831 INHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEEKIQSSI---EKIF 882 + + + +D EK N I + + ++ +E++ K+ + E I Sbjct: 694 TDQNIVEALDHAIEKLNHQIEFYQNGMNFIHKSIAERVVRGVVEYDRKLVAGGNTLEIIG 753 Query: 883 VNIPAKMA---IESI---GIHLTGFADRIDLLKSGFVDITDYKTGD-------NPKKETA 929 V A ++ + GF DRID L +G V I D+KT PKK Sbjct: 754 VEGKFDQAEYFLDEEKKDRVGFYGFIDRIDRL-NGTVRIIDFKTAKTKNLSISAPKKAED 812 Query: 930 QKLI-----------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 ++ + QLS+ A ++ + + + + + + CI D Sbjct: 813 EEKLQRLFFREDYKQALQLSIYAYSVLKTNVLPDRSVQCGIWSFAEVNKGVQNLCIFGDY 872 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 A+ +K + ++ + N E F Sbjct: 873 DISEANLTLP--MKAVGNVILDILNPENEF 900 >gi|307706580|ref|ZP_07643387.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321] gi|307618035|gb|EFN97195.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321] Length = 1091 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 118/934 (12%), Positives = 245/934 (26%), Gaps = 151/934 (16%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L ++ + + + DL +L +E + + Y + Sbjct: 110 QDPQFIQQLIELYHEMTKAQMSFLDLESLADEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + T+ ++I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFTQIALVIDGFTRFSAEEERIVDLLYG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS---LAKLLDFLDIKREDVKRLGNVSN 318 S +S + Q S L L D + + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASVEFLHHLASKYQTPALDCSQTHEQMD 266 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 S ++ S+ D E + +K ++ + ++EE +A ++ Sbjct: 267 SFDKASRLLESSY-----------DFSELTLEVDEKDRENLQIWSCLTQKEELELVARSI 315 Query: 379 RMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 R L N L+ + +K ++ I + ++ + + S+ Sbjct: 316 RQKLHANPNLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESI 375 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L+ + L++ L N + DI + + Sbjct: 376 LSLKRYRFRQEDLINLLRTGL----------------------YTNLSQADIDAFEQYIR 413 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 +S + D L IL + L + K + Sbjct: 414 YLGINGLPAFQQTFTKSHHGKFDLGRLNALRLRILAPLETLFASRKQKAENLLQKWNAFL 473 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + VT L E K + + + + + +++ ++ + Sbjct: 474 KEGAVTKQLQNLTTTMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGM 533 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + T+ + L D + GL + PK L+ + LN Sbjct: 534 SLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLN 593 Query: 674 LKTAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 T + A + + M + + L+ + N + S +LQ L+ Sbjct: 594 QATEDGAQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHF 653 Query: 723 G-----------------------------GTDFFDNLKKRGQCYL---DWTRKLDYTTK 750 G + R Q R + Sbjct: 654 GFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDREQDLTFVKVLARVMGKKLD 713 Query: 751 QPHYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 Q + P Q S S + + + Y+ + R +L L Sbjct: 714 QQGLENPALPTSPSSKQLAKDTLQALYPADQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ- 772 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHID 853 + PD G H I ++ + + Q + FE Sbjct: 773 -EELRLRPDARSHGNFLHRIFERALQLPDEDSFDQRLEQAIQETSQEREFEAIYQESLEA 831 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-------IESIGIHLTGFADRID 906 + + ++ + H + +IE I + + + G DRID Sbjct: 832 QFTKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKEQAFIQLDDGRSVFVRGKVDRID 890 Query: 907 LL-KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 L G + + DYK+ Q ++ QL AALK Sbjct: 891 RLKADGAIGVVDYKS----SLTQFQFSHFFNGLNSQLPTYLAALKREGEQNF-----FGA 941 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 Y+ + + + + + L Sbjct: 942 MYLEMAEPVQSLLAVKSLAGAVVEASRSMKYQGL 975 >gi|253681891|ref|ZP_04862688.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str. 1873] gi|253561603|gb|EES91055.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str. 1873] Length = 1149 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 113/955 (11%), Positives = 250/955 (26%), Gaps = 144/955 (15%) Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIAS 192 S L + + AN N++DII ++ + +L A L + + + Sbjct: 118 SDLRIFATAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKITDISNIF 177 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + + E L + + L+ + + + I I + P ++ + Sbjct: 178 QEFEESLHKNYIDNEDEL--TLLCKKLDESERYNGAEIWIDEFSSFTPQQYKIFEKLIKK 235 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V +D + + Sbjct: 236 AKRINVTLCMDYYKEIDSTDVFAPTKNTEQKLIKILED---------------------- 273 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 G ++ + F + + + + +V +I A N E Sbjct: 274 NGIAIDKPIILNNNNLDRFKDNEEMRFLEENYFKYPYKPYKDKTENVKIIRAVNPYSEIE 333 Query: 373 SIAIALRM---SLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSS 428 +IA + D ++ A+I+ + + ++ + I I + Sbjct: 334 NIAKEIVKITKDTDIRYREIAVISRELDGYEKIVKTIFNEYEIPHFIDKKKEIDDNPLIV 393 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 ++TS++ K + ++ +K LA + L + + S Sbjct: 394 LITSVIEISNKRWSYESMFRYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWASIWEYGN 453 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + + + + + S N Sbjct: 454 EENLEKINDIRVRVSEPLIKFYSKIKGK-----------TNAEEICTAVYNFLCSIEVNE 502 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 +I W E + + + + L +++E K +++ I Sbjct: 503 TIEKWVCRFKE--------EGNQQLVKEYSQIWNIVIELLDQVVEVFKEEKLELKDFVKI 554 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 ++ + + + R L + G+N+G++P + LS Sbjct: 555 LSLGFKDHKMGLIPPSLDQVLVSAVERVRTHKIKLLYIIGVNDGIFPAISKNEGILSDSD 614 Query: 669 Q---SDLNLKTAEKY----IGQAAHDFEMAN-------------------GTRHLIYTRS 702 + + ++ AE + + +I TR Sbjct: 615 RGYLKKVGVEIAEDTKSKAFEEQYLIYRTLTITEKYLRLCYSIADYEGKALRPSIIITRF 674 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 T S + + + R+ D K + Sbjct: 675 KALFPSITEESDNILEEEEKEDIELITREIPTFNTLVSVIRREDEKIKVNPFWSDVYKWY 734 Query: 763 LEAQPRT---------------------------------YSFSEIKQLINDPYAVYARR 789 E +S S +++ P+ Y + Sbjct: 735 SENPNWKEKVSTVFSAVSYTNAVNDISEEKIRKLYGNRLYFSVSRLEKYAQCPFGYYIKY 794 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQIIDSH 842 LK F D GT H++I E + + + +I+D Sbjct: 795 GLKAKERKLF--ALTPPDLGTFMHSVIDEFSEAVDKNSLKWYDIEKEWCKKTVSEIVDKK 852 Query: 843 FEK---ENLPPHIDIIWR-HLFHKISHSFLEH--EEKIQSSIEKIFVNIPA--------- 887 E+ + ++ + E +S + I I Sbjct: 853 AEESSRGIFSSSPRYKYFTERLKRVLIKTILVIIEHLKRSGFQPIGHEIGFGYEESYPPI 912 Query: 888 KMAI-ESIGIHLTGFADRIDLL----KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEA 941 ++ + + L G DR+D L K + I DYK+G + + QL Sbjct: 913 EIELSNGEKVKLIGRIDRVDKLDMENKD-YYRIIDYKSGNKDFSLSDVYYGLQLQLLTYL 971 Query: 942 -AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A L + + Y+++ D I K+ S +E+ ++ +K L Sbjct: 972 DAILTNEEIKKKYPVVPGGVLYLKID-----DPIIKGKRNLSDEEIEDEIMKALK 1021 >gi|313837606|gb|EFS75320.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2] gi|314927513|gb|EFS91344.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1] gi|314972545|gb|EFT16642.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3] Length = 1071 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 104/983 (10%), Positives = 259/983 (26%), Gaps = 120/983 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A EL + + P + F L+ Y ++ Sbjct: 69 EILGLTFTNKATMELSERIESNLTRVGLLKPDQPRPTVATYDSFAGTLVGDYGAWDGINT 128 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE 162 L+ AR + + + K + L + LA +A D + Sbjct: 129 GAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDASPDEVRKA 188 Query: 163 EKKWEDLHALKN--------EKYGMWWLLA---ADFLKIASKYWTERLVELNASSPVGYQ 211 + +W + W +FL++ + E E Sbjct: 189 DARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFLELV-AAYQELKKERGLVEFGDRM 247 Query: 212 IALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN-----GAIVLPG 261 + + H + +++ + A A +++ + + P+ G V+ Sbjct: 248 VQALHLVTHHPRVGEELRARYRVVLLDEYQDTSSAQADVLAALFSGPDSSHGMGHPVMAV 307 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D W + + L + + S E+ Sbjct: 308 GDPLQAIYEWRGAAASNILEFHRRFPDKEWNPAQVLSLTTNRRCADQIINAANMASEELR 367 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 R D + + + + +V + + EE + A + + Sbjct: 368 ERLSSTMNFDNDAPAGDRADVAVGQPLVAPEGNRPGEVTVAAYPDWAEECRACADIVVEA 427 Query: 382 LDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + +A++ + + L+ + + ++ L +++ + L + Sbjct: 428 KERGIITHWSDAAILVRRNSDVADLYDALSTRDVPVRLANLSGLLRLPDIAMVVAHLRLL 487 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D A+ATL+ P G + + ++ VL + Sbjct: 488 VDRQDDAAMATLLASPRLGLGTDDLAMVYR---------------------RARVLAKTR 526 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTK 555 Q + + L + E + + + + + + G+ + + Sbjct: 527 AQADGLDPDDVEVHLCDAVMERRPGGHERLQHALARVCAEIVDVEAHQGDSPDDLVLLIE 586 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + ++ D + + L + + + I Sbjct: 587 AITGLVDDMAAD--DPHRSAARRDHLDALWDEIREARRSDPTMTTAGIVAWLAAEEDFGD 644 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---------- 665 + + + + ++ L + +++ + +GV+P + + F S Sbjct: 645 GLARAATDDRDAVTVSTVHGAKGLEWPLVMIPDMAQGVFPSTASPDNFTSVAAVLPSFAR 704 Query: 666 --------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNI 708 ++ + + +A + + + + Sbjct: 705 GDANDVNHPASGSVADAKAYVAALKEDSQWAEARLAYVALTRAKERLVVSWHKWSPYRKA 764 Query: 709 PTIASRWLQRLLVLGGTDFFD------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 R+ L + GT++ D N + G + +D+ + + P Sbjct: 765 GLEPGRYAGLLADMLGTEWPDFGERPNNDVQAGTSWPVIAEDVDHG-PIDNVYQSVDDPG 823 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------------PHFKKDPD 804 + T+ L + + + L + P Sbjct: 824 QADRVNTWRSDADALLKDARRRIDLEDDVMLPPRLTTSQMVRLNANPRAFREELRRPMPR 883 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 DRG+ E + +R+ P +I + E+++ P + + Sbjct: 884 PADRGSGIGTAFHEWVSRRLAPTAPIPLFDADEIAE--LEEDDFAPEVVAAEPGGAEGHA 941 Query: 865 HSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKT 920 L EE + + M I + G D + G + D+KT Sbjct: 942 LRSLCQAFEESRWVDATVLAIEKSFVMTIGQT--VVRGRLDAVVADPDHPGDELVIDWKT 999 Query: 921 GDNPKKETAQKLIDPQLSLEAAA 943 + QLS+ A Sbjct: 1000 SRPGSADP------LQLSIYRLA 1016 >gi|319947224|ref|ZP_08021458.1| exonuclease RexB [Streptococcus australis ATCC 700641] gi|319747272|gb|EFV99531.1| exonuclease RexB [Streptococcus australis ATCC 700641] Length = 1092 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 114/938 (12%), Positives = 253/938 (26%), Gaps = 133/938 (14%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 P+ L + + L + +++ + DL AL +++ L Sbjct: 97 MPDEELKVYARLKKDPQFIQQLIQLFHELQSAQMTASDLDALPDQEKRED-------LVH 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 K ++LV S + + ++I G T L+ + Sbjct: 150 ILKAVQDQLVAGAFESESKLASFASHLIKGDLDEELKDLALVIDGFTRFSAEEDYLVYLL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + I+ + + Q S+ LLD + Sbjct: 210 HDKGVEIIIGAYASEKAYRSSFRE---------------GNLYQASVDFLLDLARTYQVT 254 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 +G + + R I ++ D+ +D V + ++++E Sbjct: 255 PSYVGQGKEDAFSRMTRILEARYDFTEVDVELSDQDR----------EAVEIWTCNHQKE 304 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLH 426 E ++A ++R L E K ++ D + + ++ I + ++ Sbjct: 305 ELEAVARSIRQRLYEGARYKDIRVLLGDVDAYQLQLKTIFDQYQIPFYLGKSESMAQHPL 364 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + L + L+K L G DI Sbjct: 365 VQWVEYLDRLRRYRFLTEDVVNLLKTGL----------------------YGTLTREDID 402 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + V + + D E + ++ + K+ + Sbjct: 403 HFEQYVRFAEIKGLAAFSRDFTANHQDKFDLERLNQIRQQVISPLQEFYKTKSQTSQGLL 462 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + + + +++ K+ S + + + +K +++ Sbjct: 463 KKFAQFFQEGQLAQNMQQLAGRGSEQEMERYDQVWKSFSHVLEQFAQVFEQMKVTLDDFL 522 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + L+ + GL + +PK L+ Sbjct: 523 SILLSGMLLASYRTVPATVDVVTVQSYDLIEPLSAPYVYAIGLTQERFPKIAKDQSLLTD 582 Query: 667 VMQSDLNLKTAEK-------YIGQAAHDFEMA----NGTRHLIYTRSLRENNIPTIASRW 715 + LN + E+ + F T+ L+ + + N + S + Sbjct: 583 EERQVLNQASDEQANLQIASQDNLRKNRFVALSLFNAATKQLVLSSPILVNEVDDKMSPY 642 Query: 716 LQRLLVLGGTDFFDNLKKRG--------QCYLDWTRKLDYTTKQPHYKRPKPFPP----- 762 L L + K Q L +L + + Sbjct: 643 LLELTKAPLNLSVISKKATASSQDMGSYQALLARLIELHQGEIDQELSKEEATFWAVAIR 702 Query: 763 ----------------------------------LEAQPRTYSFSEIKQLINDPYAVYAR 788 + Q + S S + + Y+ Y Sbjct: 703 VLRKKLASEDLHIPQISQNLTTKVLEDETLEALYPKGQALSLSASALNTYYQNQYSYYLH 762 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKE 846 +L L + PD G H I ++K + E + + ++ F Sbjct: 763 YVLGLQ--EEWHLRPDARSHGNFLHRIFERVLKDPSEGDFDERLNKAIRETSQETEFALL 820 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAI-ESIGIHLT 899 + + L + + IE I + + + + + Sbjct: 821 YQENAMAAFSKELLLDTARAT-GRVLAHNDRIETIGEEALFGQADRPFLTLEDGRPLLVK 879 Query: 900 GFADRIDLLKS-GFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRK- 956 G DRID L G + + DYK+ + E ++ QL +A+K F D K Sbjct: 880 GKVDRIDRLSDTGALGVVDYKSSETKFNFEKFFNGLNSQLPTYLSAIKD--FQDFDPDKG 937 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + Y+++ + T L + K L Sbjct: 938 IFGAMYLQMTDPLVLLKDTKAVDDAVQAVLKTQQYKGL 975 >gi|306825213|ref|ZP_07458555.1| ATP-dependent nuclease subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432649|gb|EFM35623.1| ATP-dependent nuclease subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1091 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 118/935 (12%), Positives = 251/935 (26%), Gaps = 153/935 (16%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L ++ + T + + D +L +E + + Y + Sbjct: 110 QDPQFIQQLIELYHEMTTAQMNFLDFKSLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + ++ ++I G T R++ + G ++ G Sbjct: 162 QLAQRSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S T Q S+ + L K + Sbjct: 220 A-------------YASKKAYTSPFTEGNLYQASV-EFFHHLGAK-------YQTVAQER 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELTLEVDDKDRENLQIWSCLTQKEELELVARSIRKK 318 Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L ++ + L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHDHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTGL----------------------YTDLSQADIDSFEQYLRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 +S + D E + +L + L+ + K + W+ Sbjct: 417 INGLPAFQQTFTKSHHGKFDLERLNAIRLRVLTPLETLLASRKQKAENL----LQKWSIF 472 Query: 557 T-VTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 T L + L E E K + + + + + +++ ++ Sbjct: 473 LKNTALSKQMQGLTATMEALEQERQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSG 532 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + T+ + L D + GL + PK L+ + L Sbjct: 533 MSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSL 592 Query: 673 NLKTAEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 N T E A + + M + L+ + N + S +LQ L+ Sbjct: 593 NQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVS 652 Query: 722 LG----------------------------------GTDFFDNLKKRGQCYLDWT--RKL 745 G G L +KL Sbjct: 653 FGFNRTEKKIHHKGLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKL 712 Query: 746 DYTTKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 D P + S S + + + Y+ + R +L L Sbjct: 713 DQKGLTNPAIPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ 772 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHI 852 + PD G H I +K + + + + FE Sbjct: 773 --EELRLRPDARSHGNFLHRIFERALKFPDEDSFDQRLEQAIKETSQEREFEAIYQESLE 830 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRI 905 + + ++ + H + +IE I + ++ + + G DRI Sbjct: 831 AQFTKEVLLDVARTT-GHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVFVRGKVDRI 889 Query: 906 DLL-KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 D L G + + DYK+ Q ++ QL AALK Sbjct: 890 DRLKADGALGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FG 940 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 Y+ + + + A+ + L Sbjct: 941 AMYLEMAEPVQSLLTVKSLAGAVAEASKSMKYQGL 975 >gi|328907789|gb|EGG27552.1| putative ATP-dependent DNA helicase [Propionibacterium sp. P08] Length = 1071 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 104/983 (10%), Positives = 258/983 (26%), Gaps = 120/983 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A EL + + P + F L+ Y ++ Sbjct: 69 EILGLTFTNKATMELSERIESNLTRVGLLKPDQPRPTVATYDSFAGTLVGDYGAWDGINT 128 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETE 162 L+ AR + + + K + L + LA +A D + Sbjct: 129 GAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDASPDEVRKA 188 Query: 163 EKKWEDLHALKN--------EKYGMWWLLA---ADFLKIASKYWTERLVELNASSPVGYQ 211 + +W + W +FL++ + E E Sbjct: 189 DARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFLELV-AAYQELKKERGLVEFGDRM 247 Query: 212 IALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN-----GAIVLPG 261 + + H + +++ + A A +++ + + P+ G V+ Sbjct: 248 VQALHLVTHHPRVGEELRARYRVVLLDEYQDTSSAQADVLAALFSGPDSSHGMGHPVMAV 307 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D W + + L + + S E+ Sbjct: 308 GDPLQAIYEWRGAAASNILEFHRRFPDKEWNPAQVLSLTTNRRCADQIINAANMASEELR 367 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 R D + + + + +V + + EE + A + + Sbjct: 368 ERLSSTMNFDNDAPAGDRADVAVGQPLVAPEGNRPGEVTVAAYPDWAEECRACADIVVEA 427 Query: 382 LDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + +A++ + + L+ + + ++ L +++ + L + Sbjct: 428 KERGIITHWSDAAILVRRNSDVADLYDALSTRDVPVRLANLSGLLRLPDIAMVVAHLRLL 487 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D A+ATL+ P G + + ++ VL + Sbjct: 488 VDRQDDAAMATLLASPRLGLGTDDLAMVYR---------------------RARVLAKTR 526 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTK 555 Q + + L + E + + + + + + G+ + + Sbjct: 527 AQADGLDPDDVEVHLCDAVMERRPGGHERLQHALARVCAEIVDVEAHQGDSPDDLVLLIE 586 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + ++ D + + L + + + I Sbjct: 587 AITGLVDDMAAD--DPHRSAARRDHLDALWDEIREARRSDPTMTTAGIVAWLAAEEDFGD 644 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS---------- 665 + + + + ++ L + +++ + +GV+P + F S Sbjct: 645 GLARAATDDRDAVTVSTVHGAKGLEWPLVMIPDMAQGVFPSTAGPDNFTSVAAVLPSFAR 704 Query: 666 --------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNI 708 ++ + + +A + + + + Sbjct: 705 GDANDVNHPASGSVADAKAYVAALKEDSQWAEARLAYVALTRAKERLVVSWHKWSPYRKA 764 Query: 709 PTIASRWLQRLLVLGGTDFFD------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 R+ L + GT++ D N + G + +D+ + + P Sbjct: 765 GLEPGRYAGLLADMLGTEWPDFGERPNNDVQAGTSWPVIAEDVDHG-PIDNVYQSVDDPG 823 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------------PHFKKDPD 804 + T+ L + + + L + P Sbjct: 824 QADRVNTWRSDADALLKDARRRIDLEDDVMLPPRLTTSQMVRLNANPRAFREELRRPMPR 883 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 DRG+ E + +R+ P +I + E+++ P + + Sbjct: 884 PADRGSGIGTAFHEWVSRRLAPTAPIPLFDADEIAE--LEEDDFAPEVVAAEPGGAEGHA 941 Query: 865 HSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--GFVDITDYKT 920 L EE + + M I + G D + G + D+KT Sbjct: 942 LRSLCQAFEESRWVDATVLAIEKSFVMTIGQT--VVRGRLDAVVADPDHPGDELVIDWKT 999 Query: 921 GDNPKKETAQKLIDPQLSLEAAA 943 + QLS+ A Sbjct: 1000 SRPGSADP------LQLSIYRLA 1016 >gi|251764803|sp|B4U2H0|ADDB_STREM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB Length = 1073 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 130/958 (13%), Positives = 264/958 (27%), Gaps = 137/958 (14%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E L + L ++ ++ DL L + D + I Sbjct: 98 QEDELKVFHRLRTDQAFIAQLVELYKELQAANLTAFDLTTLDRPEKQE------DLITIM 151 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 +K E+L+ L A + + ++I G T +L++ + Sbjct: 152 TKA--EQLIAQGDYDQSSRLAQLAEAIKSKSLDDELRQTVLVIDGFTRFSAEEEQLLALL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 ++ +I + K +S Q K + Sbjct: 210 NEACEEIVIGA----YISQKAYRLAFTKGNLYEASLAFIQQLAQQFQTKPI--------- 256 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + + R + ++ D + + + S V + +A N++E Sbjct: 257 YTTSEKVFDVSFSRLTQLLEANHDYSQLDWQLSAKDK----------SKVVIWQALNQKE 306 Query: 370 EAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E + A+R L + + L+ + ++ +F I I P+S Sbjct: 307 ELEHVTKAIREKLYQGYRYKDMLVLLGDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPL 366 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL I L+K L E L + + L ++G Sbjct: 367 VQFVESLERGRRYNWRREDIVNLLKSGLFGRFQ-EGELDQLEQYLVFADIQGFTKFSRPF 425 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L S + + + + ++L + L+T+ Sbjct: 426 TLNSSRQYPL------PLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQLADN 479 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +++ R+ EE KT + + + K + + Sbjct: 480 FEALA---------------GSRREADREKDEEVWKTFTGILETFYQVFGQEKMTLADCL 524 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +I + + + I + + GL+ +PK T +S Sbjct: 525 ALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISD 584 Query: 667 VMQ----------SDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 + L++ + E K Q A A T+ L+ + N S Sbjct: 585 QERASINEQTASYQRLDVPSFENIKKNHQTALSLFNA-ATQELVLSLPTSLTNSSDDVSP 643 Query: 715 WLQRLLVLGGTDFFDNL------------------------------------------- 731 +L+ L+ LG Sbjct: 644 YLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVA 703 Query: 732 -----KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 ++ L + T +P QP + S S + N+ Y + Sbjct: 704 LRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFPSQQPLSLSSSALTVFYNNQYKYF 763 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS--HFE 844 + +L L PD G H I + K R N + ++ F+ Sbjct: 764 LKYVLGLQEPESIH--PDARIHGQYLHRIFELVTKDRSNAAFDQKLGAAIAAVNQQSAFQ 821 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + I++S Q ++ ++A+ + + G DR Sbjct: 822 QVYQADAEGRYSLEVLKGIAYSTAPVLNLNQ-GMQVAKQEEAFELALGHQAL-IRGVIDR 879 Query: 905 IDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 ID L G + I DYK+ + PQL AALK + + Y+ Sbjct: 880 IDQLADGRLGIVDYKSSARVFDIGAFYNGLSPQLVTYLAALKNKG------QGLFGAMYL 933 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +++ D+L + K L + + ++++ + + Sbjct: 934 HMQEPRLSLSDFKVLD----DQLVAAAYKELT-YKGIFLAQAKEYLANGSYHLNNTLY 986 >gi|124266477|ref|YP_001020481.1| DNA helicase/exodeoxyribonuclease V subunit B [Methylibium petroleiphilum PM1] gi|124259252|gb|ABM94246.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylibium petroleiphilum PM1] Length = 915 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 140/902 (15%), Positives = 256/902 (28%), Gaps = 98/902 (10%) Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170 L R I + + +D+ P + +S A A WLA + A I ET Sbjct: 63 RLVREIAAFSRREALASRDVVVLLPFAQHLSLARAAWLALDHAPWIPRFETT-------- 114 Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 L L + P+ L + + +G Sbjct: 115 -----------QTLQRSLGPPLPAAPGELAFDPVADPLQAAQLLREQVPDWPHRDPRG-- 161 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 VA A VL +P A EK+ ++ S T Sbjct: 162 --------------FALAVARLNETAQVLARARLALPPAQRAAWLEKARSLLSGPTGPGQ 207 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF-----LPPDTSDMRNTDIL 345 + L++ + ++ + S L +S+ Sbjct: 208 QERALARLALEWSNTAATMGADALYALRPAAWVALRVGASDPLVESLLAASSEPVLWLDA 267 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405 + + P ++ V + E D+ +EA A + L + ++ AL+ DR L RRV+ Sbjct: 268 DLRAPGLRSVPGAVQVSECDDFEDEAQRAAAQVLAHLAQGEQPVALVALDRVLVRRVRAL 327 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 L R + + G LSTT + + LL A+ + + A + Sbjct: 328 LERQQVPVSDETGWKLSTTRAGATVMGLLRAVHPRAATDDLLDWLASAPAPVDGRAALDA 387 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + + + + A+ L Sbjct: 388 AWRR---------------------------------DGITALRQVDEARLEPAALALWQ 414 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 L PL + + + + + + L E S Sbjct: 415 QWLAIGEPLSATRRLALGEWLSRLREALLRAGLWESLLGDAAGRQVIDALRCRAEPPAGS 474 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + +W+D + + E P + ++ + + + L F ++ Sbjct: 475 AWGQQAARVRFDAD-GLRDWVDGVLEAVSFEPPSPDLGGAAPVILTPLARAMLRPFAAVV 533 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 G + L + + L L ++ + F L R+ Sbjct: 534 CPGADAAHLGALPKPQALLGDALAAALGLPSSAQRREHERRAFAQLLRVPQLTLLHRRRD 593 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 P AS L +L + G + P P P Sbjct: 594 GAEPLQASPLLLQLQFDAREAV-----RSGGEPRTPVAVVPRPLAHPLPVAPALLPD--- 645 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + + + + L PY +A+R+L L D+ D GT H ++ + ++R Sbjct: 646 ---SLNATAYEALRACPYRFFAQRLLGLAEAEELDDAVDKRDYGTWLHAVLQDFHRQRQP 702 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVN 884 + L+ +I + + + F + +L + I Sbjct: 703 GAPQDDAALLLRIARARQALLARDDADFLPFAVWFEDLLPRYLAWWHAEEALGANVIDTE 762 Query: 885 IP---AKMAIESIGIHLTGFADRIDLLKS----GFVDITDYKTGDNPKKET--AQKLIDP 935 + A+ + G+ L G DRID + G I DYKT Q L D Sbjct: 763 LELLAQPPALAAAGLRLRGTLDRIDAVPGKGGHGAHRILDYKTSSETTLRERLRQPLEDT 822 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL AA L A + V Y+ L + + + + SA L E + Sbjct: 823 QLPFYAALLDAS--RGVPPGDV-QAAYLSLDGREGVKLLAHPDVAASAATLLEGIAADFT 879 Query: 996 EI 997 + Sbjct: 880 RL 881 >gi|296118827|ref|ZP_06837403.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] gi|295968316|gb|EFG81565.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] Length = 1057 Score = 155 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 117/1105 (10%), Positives = 264/1105 (23%), Gaps = 212/1105 (19%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 + V T S + +L+ +P + + +K + LR Sbjct: 30 PDAGSYVVTGPAGSGLTSFLADTVLHHI------EQGQDPDS---ILVVSSSKESGARLR 80 Query: 62 SEFIEITGKK-----STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 + + I++S+ + D L ++ ++ + L+ Sbjct: 81 EDITTRLAVANGQEFVSESAIVRSVHSLAFALLRLDSDEEIRL---ITGAEQDAVIRELL 137 Query: 117 LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 D + + A+ L D + ++ + L AL + Sbjct: 138 QGHV--------DNNAGQWPADIRPALGYVGFARQLRDFLLRAIERQQTPDSLIALGKQY 189 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST 236 W A FL+ + + S + + II+ + Sbjct: 190 SQPMWTAAGHFLREYEQV---MALSGMHSYSAAELVTQVLLREHLTQSHQWETIIVDEAQ 246 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 P + L+ +A+ +V+ G D + + T + + L Sbjct: 247 LLDPTSGELIRRLADTAK--LVVIGGDPNQAVFAFRGATTDFLDTFPAQHRIE--LPAPL 302 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + + +V + R + +R++ L + Sbjct: 303 RTPEPACVSIVDSERTQRDVLADFIRRRHLDDGVAWKDIACIVRSSGDLGPVRRTLLAAG 362 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 V + D E +A L Sbjct: 363 VPVHINPTDVVLSEQRLVAATL-------------------------------------- 384 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + A+ + L+ P+ Sbjct: 385 ---------------LAVRALENPLPNKELEELLTGPIGGADPVGLRRLIRALRRWNPEA 429 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 RG DI++ + + + K ++ + L Sbjct: 430 RGMDMLRDILEHEVIEDSLLEVLNKYE-------------KSTLERIIGILSAGREVLQK 476 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 Y + + + +D + +L + +S+ Sbjct: 477 YGSPEEVLWAIWAKTDLANRLRNSSLRGGATGSQADRDLDAMMALFDAAGDYSERRPGAD 536 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 A I +++ + + IL + FD++ + G E WP Sbjct: 537 L----AAFIDHITEQVLPTGVRDRRTAVPDAVSILTAHGAVGREFDSVAVVGAQESQWPA 592 Query: 657 NTAKNPFLSRVMQSDLNLKTAE---------KYIGQAAHDFEMAN---GTRHLIYTRSLR 704 ++ DL + + + + F +A R L+ Sbjct: 593 LGETGTIFAQEELIDLVDRGIDPSIPVNSISDRLHEERRLFHVATTRHTARMLLVAVDNP 652 Query: 705 ENNIPTIASRWLQRLLVLGGTDF-FDNLKKRGQCYLD-----WTRKLDYTTKQPHYKRPK 758 + + SR++ G L +R + R++ Sbjct: 653 DGDEVAEPSRFIDEFANRPGHHRNLPELLQRLERQEAFRKQLLAREMGLEPPATPEAHEV 712 Query: 759 PFPPLEAQPRTYSFSEIKQLIN-------------------------------DPYAVYA 787 Q S S + DP +A Sbjct: 713 DKEIDPLQVSVLSVSAFIAQMRTVVGDPEATESARAQAARQLARLAEEGVPGADPSQWWA 772 Query: 788 RRILKLDFIPHFKKDPDRTD---------------------------RGTLFHNIITELI 820 + + + + + RG L H + + Sbjct: 773 TQTVAEERVLTTNPRLSPSRIEALLKCPLNAMLSDAADNNSDKYHMVRGNLAHAYMEAIG 832 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + + + + P R F + + ++ + ++E Sbjct: 833 R---GADEELARRETVAAFEQI---QTSPTWKRPQERADFEGLLQRTYQWIQETRDALEL 886 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDL--------LKSGFVDITDYKTGD-NPKKETAQK 931 + V + + + G+ ++G+ DR++ + G + + D KTG P E + Sbjct: 887 VDVEVRVSVETQP-GVRVSGYIDRLERARAEEGADTEEGGLRVIDLKTGSYKPSDEETSQ 945 Query: 932 LIDPQLSLEAAALKAGSF------------SQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 PQL L G+ + R A L + I ++ Sbjct: 946 H--PQLLAYQLVLAHGALRQDEQGTQVVSGEDGEVRDGATLVF----PGTDTVKIATAEQ 999 Query: 980 KYSADELSEKSLKNLIEIVTLLQNG 1004 D + + L ++ L Sbjct: 1000 ARKEDAELAEFAEKLPPLLDELAGP 1024 >gi|315613167|ref|ZP_07888077.1| ATP-dependent nuclease subunit B [Streptococcus sanguinis ATCC 49296] gi|315314729|gb|EFU62771.1| ATP-dependent nuclease subunit B [Streptococcus sanguinis ATCC 49296] Length = 1091 Score = 155 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 108/921 (11%), Positives = 246/921 (26%), Gaps = 145/921 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L ++ + T + + DL +L +E + + Y + Sbjct: 110 QDPQFIQQLVELYHEMTTAQISFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + ++ ++I G T R++ + ++ Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKSAEIVIGAY 221 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + ++ + + + L L K + Sbjct: 222 ASKKAYISPFS----------------EGNLYQASVEFLHHLGAK-------YQTPAQDR 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKIDSFDKASRLLESSYDFSELALDVDEKDRENLQVWSCLTQKEELELVARSIRQK 318 Query: 382 LDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L ++ + L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHDHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTGL----------------------YSDLSQADIDAFEQYLRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + +S + D E L +L + L + K + Sbjct: 417 INGLPSFQQTFTKSHHGKFDLERLNSLRLRVLAPLETLFASRKQKAENLLQKWNTFLKNA 476 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 ++ + L E K + + + + + +++ ++ + Sbjct: 477 ALSKQMQELIATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLS 536 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + T+ + L D + GL + PK L+ + LN T Sbjct: 537 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQAT 596 Query: 677 AEKYIGQAA-------HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 E A + + M + L+ + N S +LQ L+ G + Sbjct: 597 EEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENERKESAYLQELVGFGFS 656 Query: 726 DFFDNLKKRGQC------------------------------------YLDWTRKLDYTT 749 + ++ +KLD Sbjct: 657 RIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQTGSSENEQDVTFVKVLARVMGKKLDQKG 716 Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 P + S S + + + Y+ + R +L L Sbjct: 717 LTNPALPTSPSSKPLEKETLQALYPTNKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EE 774 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856 + PD G H I +K + + + FE Sbjct: 775 LRLRPDARSHGNFLHRIFERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFT 834 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908 + + ++ + H + +IE I + ++ +H+ G DRID L Sbjct: 835 KEVLLDVARTT-GHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLK 893 Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 G + + DYK+ Q ++ QL AALK Y+ Sbjct: 894 ADGALGVVDYKS----SLTQFQFPNFFNGLNSQLPTYLAALKGEGEQNF-----FGAMYL 944 Query: 964 RLKQKFKIDCITNDKKKYSAD 984 + + + A+ Sbjct: 945 EMAEPVQSLLAVKSLAGAVAE 965 >gi|257866181|ref|ZP_05645834.1| exonuclease RexB [Enterococcus casseliflavus EC30] gi|257872512|ref|ZP_05652165.1| exonuclease RexB [Enterococcus casseliflavus EC10] gi|257800115|gb|EEV29167.1| exonuclease RexB [Enterococcus casseliflavus EC30] gi|257806676|gb|EEV35498.1| exonuclease RexB [Enterococcus casseliflavus EC10] Length = 1205 Score = 155 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 111/947 (11%), Positives = 236/947 (24%), Gaps = 143/947 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVEL--N 203 + L + T EDL A L + + + L+E Sbjct: 121 GFIQQLLAFYQEMHTSRLGIEDLLAGGAAPSATQDEEKKYSELAKIFQRFEQELLERALQ 180 Query: 204 ASSPVGYQIALMR----------------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 P+ + + II+G + +L+ Sbjct: 181 VEQPITLLTRFLEGSLLDDSPVEQAMPNAVSMNKAPDLSHALFIISGFSAFSTQEQQLIQ 240 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + I L LD P E + + T+ Q L + Sbjct: 241 VLMKKSHVIIDL-FLDRGYPQ-------ELPSPLNLFYEAGRTYYQ--LISFARENQVPI 290 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++L + +++ +T + + + + K F + + N Sbjct: 291 YLDQKLSVNQEVDKEAKGSMQQAYNEIETFWRQTQSQVNYQQQSSVKDFLAIWKVG--NP 348 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNL--------ARRVKLELTRFGINIDISAGI 419 EE IA ++R + + K+ L + L + + T F I I Sbjct: 349 EEEIRQIAASIRGMMSDKKRYPTLRYREIQLLIAEPEIYHQYIPKIFTEFEIPFYIDEEQ 408 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---------AKFGFPEKYLSRAKNA 470 ++ L + I L++ L A + + + Sbjct: 409 MMAQHPLVEFLNAFFACQSYGFRLNDILRLLRTELYLPAAYRSEADWLVGRDQFRKLVDI 468 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E AL + + L + + + + + V L Sbjct: 469 TENKALAHDFQGASWTRNEDWELIEYLQSEEEQTDKVDLTAYTNQLRRAFKQDVADTLDW 528 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 +T T + L + + + + E+ + L L + Sbjct: 529 LTAARTNRDAVELLYRFLLNAGVEEQLRHWRDQAIQ-QRKLDQARNHEQAWQALMDLLDE 587 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + D++ ++ T + I +R GLN Sbjct: 588 YAAIYGEESFDFALFEDVLLTGLENVTFGKIPTAIDQVNINRLDLARPKQAKITFAPGLN 647 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-----------AHDFEMANGTRHLIY 699 E P+ L+ + N + + A + + T HL Sbjct: 648 ETALPRKIENKTLLTNEERQHFNQLFNGEKYLRDTVVEGSVKEPFAFYSVLLSATEHLSL 707 Query: 700 TRSLRENNIPTI-ASRWLQRLL---------------------------------VLGGT 725 + ++ + I S +L R++ Sbjct: 708 SYAVNFDTQQNIKMSPYLDRVVKRLDVPLQERGILTLVSDPRNYVGSYRGLIYQINNLSQ 767 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTY------- 770 N + + + + L + + P P +AQ Sbjct: 768 QAQKNKENLPRVWEQLKQALLRSEWTDLAAQVFESQTHQNIPIPLSQAQAAALYGPSIYS 827 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--- 827 S S+++ Y + L+L + G FH+ + +K I +N Sbjct: 828 SISQMETFYQCEYKYFVSYGLRLKERE--VYGLNPAMTGEFFHDALDRFVKVLIAENISL 885 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS----------S 877 T Q ++ ++ ++ L + + Sbjct: 886 TQLTADQRVQFVEVVLQEIFGESRYRLLTSSARMNFIRYQLGKTIQRVAWALAKQGQKMH 945 Query: 878 IEKIFVNIPA----------KMAIE---SIGIHLTGFADRID--LLKSGFVD-ITDYKTG 921 + + + +H+ G DR+D + + DYK+ Sbjct: 946 FSPEKTEVLFGQIAGSNGINGIELPLSSGGKLHVRGKIDRVDTAKTEEEQWLSVVDYKSS 1005 Query: 922 DNP-KKETAQKLIDPQLSLEA--AALKAGSFSQIDCRKVANLFYIRL 965 A + QL A A + A +Y+ + Sbjct: 1006 SRDFDLSEAYYGLAMQLITYLDVALTDAVQLVGSPNVRPAGAYYLHV 1052 >gi|331266378|ref|YP_004326008.1| exonuclease RexB, AddB, ATP-dependent nuclease [Streptococcus oralis Uo5] gi|326683050|emb|CBZ00667.1| exonuclease RexB, AddB, ATP-dependent nuclease [Streptococcus oralis Uo5] Length = 1091 Score = 155 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 125/978 (12%), Positives = 264/978 (26%), Gaps = 162/978 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPKELRVYGA---------IKQEPQFIQQLIELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T + + DL +L +E + + Y + + L+ A Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLAHLIEAIEN 178 Query: 221 H--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 ++ ++I G T R++ + G ++ G + S Sbjct: 179 GKVSSDFSQLALVIGGFTRFSAEEERVVDLLHR--KGVEIVIG-------------SYAS 223 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +S Q S+ + L L K + ++ SF Sbjct: 224 KKAYTSPFAEGNLYQASV-EFLHHLGAK-------YQTPAQDRSQTHEKIDSFDKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALIT 393 + D E + +K ++ + ++EE +A ++R L ++ L+ Sbjct: 276 ESSYDFSELTLEIDEKDRKNLQIWSCLTQKEELELVARSIRQKLHDHPELSYKHFRILLG 335 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + +S Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPAFQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT-VTCLQNVCLDEHRKL 572 + D E L + + PL T ++ NL + W+ T L D + Sbjct: 434 KFDLERLNALRLRV---LEPLETIFASRKQKAENL-LQKWSIFLKNTALSKQMQDLTATM 489 Query: 573 PNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 L E E K + + + + + +++ ++ + + T+ Sbjct: 490 EALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVL 549 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---- 685 + L D + GL + PK L+ + +LN T E A Sbjct: 550 VQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTDEERQNLNQATEEGAQLLIASSEN 609 Query: 686 ---HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF---------- 728 + + M + L+ + N + S +L L+ G Sbjct: 610 LKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLHELVSFGFRRREKTMNHKNLSK 669 Query: 729 ------DNLKKRGQCYLDWTR--------------------KLDYTTKQPHYKRPKP--- 759 +L Y + KLD P Sbjct: 670 KDMGSYHSLLSSLVAYHQQSETNDTEQDLTFVKVLARVMGKKLDQKGLTNPALPTSPSSK 729 Query: 760 --------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + S S + + + Y+ + R +L L + PD G Sbjct: 730 PLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRLRPDARSHGNF 787 Query: 812 FHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 H I +K + + + FE + + ++ + Sbjct: 788 LHRIFEHALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLVDVARTT-G 846 Query: 870 HEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTG 921 H + +IE I + ++ +H+ G DRID L G + + DYK+ Sbjct: 847 HILRHNPAIETIQEEATFGGKDQAFIQLDNGRSVHVRGKVDRIDRLKADGALGVVDYKS- 905 Query: 922 DNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 Q ++ QL AALK Y+ + + + Sbjct: 906 ---SLTQFQFSNFFNGLNSQLPTYLAALKGEGEQNF-----FGAMYLEMAEPVQSLLNVK 957 Query: 977 DKKKYSADELSEKSLKNL 994 A+ + L Sbjct: 958 SLAGAVAEASKSMKYQGL 975 >gi|296536931|ref|ZP_06898961.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] gi|296262742|gb|EFH09337.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957] Length = 292 Score = 155 bits (390), Expect = 6e-35, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 124/320 (38%), Gaps = 35/320 (10%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 ++ I PF + +L + +PL L+ TI +PT+RA LR F+ Sbjct: 2 RLYEIPAHLPFLGTLAAGVLRWVGQD-------DPLSLSRTTILLPTRRAALALRESFLR 54 Query: 67 ITGKKSTILPIIKSLGDVVEEKFT-ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 +G ++ +LP + +L + ++ L + +L P V+ R L L++ ++ Sbjct: 55 ESGGRTLLLPRMHALSGLSTQEADELSLPVLLDLPPAVAPAVRHSVLTSLVMRLPSR--- 111 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 P +P A LA LA+ +D E L L E++ W + Sbjct: 112 ----------FGGPDTPEQAWRLATALAEWLDETALEGCDMARLETLVPEEFATHWQVTL 161 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAGS--TGSIPAT 242 FL+ W L ++A +RA+A+ + + P+I AG G+IPA Sbjct: 162 TFLRGVLSAWEAWLAGQGLMDIGPRRVAALRAQADSWKREPPRDPVIAAGIGAGGTIPAA 221 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 A L+ VA P G +VL G +W I E THP +LL Sbjct: 222 AALLKVVAQMPQGCVVLHGAGEVKSDELWAAIGE-----------SPTHPLAGQVRLLSA 270 Query: 303 LDIKREDVKRLGNVSNEMYG 322 +D D++ Sbjct: 271 MDATPRDLEPWPGCPAGDPA 290 >gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314] gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314] Length = 1067 Score = 155 bits (390), Expect = 6e-35, Method: Composition-based stats. Identities = 112/1068 (10%), Positives = 266/1068 (24%), Gaps = 181/1068 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------------EE 87 V T++A Q+L + + I +L D+ + Sbjct: 54 QVLGLTFTRKAAQQLSQRIRQRLETLAG----IPTLRDLDPSGGIARSLQAITPTVSTYD 109 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + LL Y L PV RL+ L I R + + +L + Sbjct: 110 SYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTEY----- 164 Query: 148 LAKNLADIIDIIETEEKKWEDLHAL--------------------KNEKYGMWW--LLAA 185 L D++ ++ +++ ++ W + Sbjct: 165 ----LLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITR 220 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIP 240 + + L + + R + H + +++ + Sbjct: 221 LQYLPLVEQLKQELHDRAVITFGEQMSKAARLASRHPQVGYSQRRRFRVVMLDEYQDTSH 280 Query: 241 ATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 + L+ ++ + G V D W T + + Sbjct: 281 SQRVLLRSLFGGTDPGLTVTAVGDPMQAIYGWRGATAANLENFVGDFPV----------- 329 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + L + + T ++ P +V Sbjct: 330 ISLDARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAPTGEV 389 Query: 360 ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417 + +EE +A L+ D + +A++ R + + EL GI ++I Sbjct: 390 QIGWFATAQEERAFVADELKKYWDARSEKFTAAVLVRKRRHSEPMAAELRARGIPVEIVG 449 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-------KFGFPEKYLSRAKNA 470 L + + ++ + + D A ++ P + + Sbjct: 450 LSGLLDVPEVADMVAIATMLVRPQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVR 509 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED-------------- 516 + + L + + D + T+ E Sbjct: 510 PGSPKEKEPLPEEPLERLAAQIADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRL 569 Query: 517 ----------------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 ++ + + L + G + + + Sbjct: 570 AAQLRHLRTNSLGHSVADIFADIEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAH 629 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII---------------ETGSCIKANAIEW 605 + +E+G + + + S + A+A + Sbjct: 630 SSVSLPELLDYFQLARDQEDGLEPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTY 689 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + P + L++ + + E ++ S Sbjct: 690 DAKAFTWLKNVKHIPSSLRGDAGEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENS 749 Query: 666 RVMQSDLNLKTAEKYIGQ---------------AAHDFEMANGTRHLIYTRSLRENN--- 707 R+ + + +E+ + AH + + T E Sbjct: 750 RLFY--VGITRSERALMVTGSAIDGTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVE 807 Query: 708 ---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---KRPKPFP 761 + + + +L +R + Sbjct: 808 KLPAEEAMYPAVTIPPGVAEGAELVRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPT 867 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 R + +++ L N+P ARR+ + RGT FH + + Sbjct: 868 LEVEISRELTATDLVNLKNNPEQF-ARRLRRPVPFKPNTY----AKRGTQFHQWLEDRFG 922 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++ + +++ + FE+ E + Sbjct: 923 ASALLDEDQLPGMDEELSEQTFEELR--------------------AAFLESRWADRTPN 962 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 +V P ++ I + G D + + D+KTG P+ I QL++ Sbjct: 963 YVEHPFEVVI--GRHVIRGRMDAVFHEPDDTWLVVDWKTGQTPRGAEMDAAII-QLAVYR 1019 Query: 942 AALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSE 988 A S ID ++V F Y+ F+ D + + + + ++ Sbjct: 1020 IAWA--SLRGIDPQQVRGAFHYVAHNHTFEPDHLPDAGELALLLDGAQ 1065 >gi|149182416|ref|ZP_01860892.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1] gi|148849879|gb|EDL64053.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1] Length = 1163 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 97/915 (10%), Positives = 208/915 (22%), Gaps = 137/915 (14%) Query: 156 IDIIETEEKKWEDLHALKNE-----KYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210 + + E+L + + L++ + E L Sbjct: 127 LTEFKRYCISPEELSEKQEGWGEGGQESKALADKLHDLQLIYDSFEENLS--GKYIDSED 184 Query: 211 QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 L+ I I G P ++ + ++ + + + Sbjct: 185 YFTLLEESIGKSEFLQNAEIFIDGFHSFTPQEYAVIGKLMDYCPRVTIALTAETDLIPGE 244 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + ++ +L +L + ED LG S R + Sbjct: 245 QSDLFRMTSETYE-----------ALKELALTSRGEVEDKVVLGKTS-----RFQNKGLA 288 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENK 386 + + E S + ++EA N R E +A +R K Sbjct: 289 HIEANFEKRPVMPFEEE---------SGMTILEASNRRAEIEGVAREIRRLARTESYRYK 339 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + L+ + ++ + I I + ++ S L + + + Sbjct: 340 DMAVLVRNGQEYQDIIETVFYDYEIPYFIDQKRKMLNHPLIELIRSTLEIMNSNWRYEPV 399 Query: 447 ATLVKHPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 VK L + L + LE L + R + Sbjct: 400 FRAVKTDLLFPYDRNPQQLREKMDKLENYVLAYGIQGDKWTKKDRWIYRRFRGLEQADMP 459 Query: 506 PHWQSRLSEEDKELAV---------------------LLVDHILQCITPLVTYKTNKNST 544 + R E + L + + + L + Sbjct: 460 QTDKEREMEREINELRLFISAPILRFGRRLKKGKTGQDLCEILYLYLEELDIPAKLERLR 519 Query: 545 CGNLSISDW--TKLTVTCLQNVCLDEHRKLPNLWFEEE-----GKTLSSLFSKIIETGSC 597 S D + V + + L EE + + + + Sbjct: 520 LEAESRGDIISAREHDQAWNAVMDLLDQFVEILGDEEVTVKKFASIIDAGIESMRFSLVP 579 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLF---ILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ + I + + I + + L + GL Sbjct: 580 PAVDQVMIANLEQSRLSDLRAAFVIGVNDGVLPAKITEDGIFSDEDREKLAVSGLAIAPG 639 Query: 655 PKNTAKNP----------------------------FLSRVMQSDLNLKTAEKYIGQAAH 686 K + L L+ + I + Sbjct: 640 SKTRLLDEEFIAYKAFTTPSERLYVSYPIANEEGKALLPSPYIKRLSELCPQSEISLLVN 699 Query: 687 DFEMA--------NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 D ++ + D++ K Sbjct: 700 DPSELPKDEQLSYVCHPNVTISYLTSGLQAKKRGYHIEDFWWDAYNYYVSDSVWKG--RA 757 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 L Y K + L + S S ++ P++ +A LKL Sbjct: 758 RHILSSLFYQNKGKKLTE-ETSQELYGEEILASVSRMEMFHGCPFSHFANHGLKLRERD- 815 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENL------- 848 + D G +FH + + ++ ++ Sbjct: 816 -IYRLEAPDIGDMFHAALKWISEEIDRNGFSWKQLTKTQCLELAREAVLSLAPKLQHQIL 874 Query: 849 -PPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPA--KMAIESIGIHLT---- 899 + + + + E S + + + K + L Sbjct: 875 LSSNRHHYIKKKLQDVIGRASLILSEHAKASGFAPVGLELGFGPKAELPPFAFTLKNGTK 934 Query: 900 ----GFADRID--LLKSGF-VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQ 951 G DR+D G + I DYK+ + Q+ + S Sbjct: 935 MALQGRIDRVDKAESDEGVYLRIIDYKSSARDLNLTEVYYGLSLQMLTYLDIVLTHSQKL 994 Query: 952 IDC-RKVANLFYIRL 965 I A +FY + Sbjct: 995 IGADADPAGVFYFHV 1009 >gi|222152847|ref|YP_002562024.1| ATP-dependent exonuclease subunit B [Streptococcus uberis 0140J] gi|251764630|sp|B9DRU9|ADDB_STRU0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|222113660|emb|CAR41581.1| putative ATP-dependent exonuclease subunit B [Streptococcus uberis 0140J] Length = 1086 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 128/965 (13%), Positives = 265/965 (27%), Gaps = 156/965 (16%) Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-ELNASS 206 K L D+ +++ D+ D + I S E L + S Sbjct: 114 FIKQLVDLFKEMQSANLTIADIEM-------ENLARKEDLITIFSALSRELLRYDFQQMS 166 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + +R+ + K +II G T L+ + ++ + Sbjct: 167 SLAVFQEAIRSGL-LDQELAKTVVIIDGFTRFSAEEESLIHQLHQKCQEIVIGTYISSKA 225 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + T+ + S + Y + L L ++ +S + Sbjct: 226 MKQNF---TKGNLYEASIDFLRQLSVTYQVKSLY--LSGEKTFKNSFTTMSRLLE----- 275 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 D ++ + +DV + + N++EE +IA +R L+E Sbjct: 276 -------------SQYDYSLTELTISEDIKNDVQIWQQLNQKEEIENIARDIRQKLNEGY 322 Query: 387 KKSALITADRNLARRVKL---ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + ++ ++ ++ I + +S + SL N Sbjct: 323 RYKDILVLLGDVEAYQLQVGPIFDKYDIPYYLGKAESMSHHPLVQFMDSLENCRRYNWRK 382 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 I L+K + E N DI + K+ T Sbjct: 383 EDIINLLKSRMLGDFTIR----------ECDQFESYLNYADINGFTAF-------SKDFT 425 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL-TVTCLQ 562 Q D + L+ ++ + + K S N + + + V+ Q Sbjct: 426 ANTFNQKNEKGYDLDKINLIRKYLFSHLNQFFKSRAQKGSNILNHFLQFLSDIDFVSSFQ 485 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + EE K+ +S+ + +I + + Sbjct: 486 RLSQKQSALQQEKD-EEVWKSFTSILESFYNIFKDETLTQELTLMLIKSAMQAADYRVVP 544 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + + + GL +PK + +S ++ T EK+ Sbjct: 545 ATLDVVSVKSYDLVEPHSKSLVYALGLTRTHFPKTVQQTGLISDQERAK----TNEKWDS 600 Query: 683 QAAHD-----------FEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG---- 723 D + T L+ + + N + AS +L+ L G Sbjct: 601 HHRFDISSIENSKKNHYTALSLFNAATDKLVLSYPMVLNEVVEEASPYLKLLHSFGIPIV 660 Query: 724 -----------------------------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + ++ +L +R L Sbjct: 661 EKQKNTFSDLENGIGNYKSLLSQWIALNQEPLTEELYQEEKSFWLVMSRYLKKQLAAKKL 720 Query: 755 KRPK---------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P+ + QP + S S + ++ Y + + +L L + Sbjct: 721 TFPEQKSHLATSRLSPEVLAIKYPDHQPLSLSSSALTVYHDNQYKYFLQYVLGLQELESI 780 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWR 857 PD GT H + ++ + + + Q + F+ Sbjct: 781 H--PDARHHGTYLHRVFEYVVDDQRSIPFDDKIEEAIQRTNQERLFQTYYQSDAESRFSL 838 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 L I+ S I V ++ + + + G DRID L G + Sbjct: 839 SLLEDIAKST-----ASIFPITPTKVLSQEERFQLHFDEK-VRVNGIIDRIDQLDDGSIG 892 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAAL-KAGSFSQIDCRKVANLFYIRLKQKFKID 972 I DYK+ ++ QL AL + ++ Y+ + D Sbjct: 893 IVDYKSSQTVFDIGKFYNGLNSQLPTYLEALNTREKSKDMPP-QLFGAMYLHM-----QD 946 Query: 973 CITNDKKKYSADELSEKSLKNLIEIVTL---LQNGEQPFISHLRLSEKSNIQS------- 1022 + + D+ K ++ L +T E+ ++ KSN+ S Sbjct: 947 PKMDLNEFKLFDD---KVVEKLYSRLTYKGIFLEREKEHLASGAYQMKSNLYSEEELRNL 1003 Query: 1023 -EYDH 1026 +Y+ Sbjct: 1004 LDYNQ 1008 >gi|325690486|gb|EGD32489.1| exonuclease RexB [Streptococcus sanguinis SK115] Length = 1093 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 120/923 (13%), Positives = 255/923 (27%), Gaps = 137/923 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLYHELQTAQMSFADLEFLEEPEKRED-------LVKIFTAVTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+ + G ++ G + Sbjct: 166 SSQIAAFAQHILAGDTDEELETLALVIDGFTRFSAEEEYLVGLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + G + Sbjct: 222 ASQKAYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYISHAGAEDAFGRISKV 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ ++ TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSEQAVEVSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L G+ ++ + + Sbjct: 382 LEDLLNLLKTEL----------------------YGDLAQEELDHFEQYLRFADIKGAGK 419 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN-STCGNLSISDWTKLTVTCL 561 + + D + + ++ + ++ + L Sbjct: 420 LAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQAARLSDNL 479 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + E ++ EE K S + + + + K +++ +I + + Sbjct: 480 TALLQGESQQEQE-RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTV 538 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + GL + +PK LS ++ LN T + Sbjct: 539 PATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRAWLNDATDSQAE 598 Query: 682 GQ---------AAHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV--------- 721 Q + T+ L+ + N + S +L L Sbjct: 599 LQIVSSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIV 658 Query: 722 ----------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPK 758 L + Q + R L P+ Sbjct: 659 KKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQ 718 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + QP S S + + YA + + +L+L + P Sbjct: 719 ISKELKTESLQLETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQ--EEWTIHP 776 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFH 861 D G H I ++++ + + + E E++ R L Sbjct: 777 DARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLL 836 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFV 913 + + + IE I + +E + ++G DRID L K + Sbjct: 837 DTARATGRV-LAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKIESL 895 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYK+GD E ++ QL AA++ + Q D Y+++ D Sbjct: 896 GVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-TFGAMYLQMT-----D 949 Query: 973 CITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 950 PIVALKDTKTLSDAVNQSMKPLQ 972 >gi|227891361|ref|ZP_04009166.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus salivarius ATCC 11741] gi|227866939|gb|EEJ74360.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus salivarius ATCC 11741] Length = 1193 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 112/973 (11%), Positives = 265/973 (27%), Gaps = 148/973 (15%) Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + + R + ++L + ++ +S + + D I+ ++ E+L Sbjct: 100 MIVYRSLQEHSDELTIFKGEQTQPGFIAQLVSQLIELQQSCITYDDIERMK------ENL 153 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNA--SSPVGYQIALMRAEAEHLMKGTK 227 ++I + + + + + ++ E + Sbjct: 154 SQQDTAD-SAELEAKLHDIEIIYRDFMQMTDSKYLKPADILPSLTQYLQNE-----DLSN 207 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 II G + ++S + + L+ + +++K + S T Sbjct: 208 SYFIIEGFSQFTAQEQAIISVLLQRAKEVRIDLILNRGVTDI--EDLSDKQSLFYRSERT 265 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 Y Q + + L+ R + L + + L+ Sbjct: 266 YYLLYQQARKAQVKILN-----------DVYPQELRVETLELQSLAKY---WKESTDLKP 311 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARRVKL 404 ++ +I+AD E IA ++ + D L+T D N R + Sbjct: 312 INVEKIGDNHNLQVIKADTRMTEIKEIATRIKQMVALKDYRYADFLLLTPDLNKYRNIIE 371 Query: 405 -ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA-----KFG 458 + + I + + +LT+L N + ++ + L+K L Sbjct: 372 PIFNDYKVPIFVDLAKKMIDHPLVELLTALFNVKARHYRYVDMMRLLKTELLIPKTEYGY 431 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA--TQKNNTHVPHWQSRLSEED 516 K + + E + L+ + V R T V ++ Sbjct: 432 LGIKQFRQDLDLTENLILKFGLEGSQWLRKDDWVYYRFGSSDFGTQTDVQEKITKQVNVI 491 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + ++ + + K L + + + L++ + Sbjct: 492 RHYIKEILPPFFKQLDEAENGKEAAQILMNFLITNGVPEQLINWRNQ-ALEQGDMVMADR 550 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E+ +L + ++T + ++++++ +G T + + I T + Sbjct: 551 PEQVWNLFCALMDEYVDTLGDLSFREEDFLNLLQTGFEGATYRQVPSTLDQVIISETTAT 610 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-NLKTAEKYIGQAAH--------- 686 ++ + + G + V P L+ + + + EKY+ A Sbjct: 611 QMNDRKVTFIFGATDLVMPNRIQNTMLLTDMDRELVQGTLDDEKYLSDTAEGRMAAEPFM 670 Query: 687 -DFEMANGTRHLIYTRS-LRENNIPTIASRWLQR--------LLVLGGTDFFDN---LKK 733 L ++ N S ++ R L G ++ LK Sbjct: 671 NYLAFMTPKERLYFSYPVAGVNEDGLRMSPYVNRIMKQFDLPLYEANGEPTLEDKKVLKF 730 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------- 768 + + + K+P P + Sbjct: 731 VATKRTALSNLIGVARQAKGQKQPLPIMWRYIYQKLQEDATYRRLTRKLMAGIEYSNIPE 790 Query: 769 ---------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 S S+ ++ + YA + + LKL F+ + G +H Sbjct: 791 RLKTEYAEKLYGKTLNTSVSKFEEFFKNHYAFFLKYGLKLKERDVFE--LSPANTGEFYH 848 Query: 814 NIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHS--- 866 + +L+K + P I+ I Sbjct: 849 MALDKLLKTLKQDKVSIADINKPQFDSYLQQVLGGMEQLPQFQILQSSNRMQFILKQLGA 908 Query: 867 ------FLEHEEKIQSSIEKIFVNIPAKMA-------------IESIGIHLTGFADRIDL 907 + H + ++ + + + +++ G DRID Sbjct: 909 TVSQMGWALHNQGQRTKMRPLETEVLFGHVGTENGLKALTYDLGNGHKVNVRGKIDRIDQ 968 Query: 908 L--KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEA--------AALKAGSFSQIDCR 955 + + I DYK+ + + A + Q+ L + +I Sbjct: 969 MIIDNQRYLGIVDYKSSSHKFNYQDAYYGLALQMLTYLNAMLQNTDLLLDLNAGEEI--- 1025 Query: 956 KVANLFYIRLKQK 968 K A Y+ L+ Sbjct: 1026 KPAGAVYMHLQNP 1038 >gi|227872192|ref|ZP_03990559.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268] gi|227841975|gb|EEJ52238.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268] Length = 1162 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 121/933 (12%), Positives = 243/933 (26%), Gaps = 146/933 (15%) Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215 I + EDL + L + + L + G + Sbjct: 129 ISECMQYKVSPEDLRKCAEKSKRSITRAKFLDLAYIYEEFLLYLSRTGRITEEGLADQGI 188 Query: 216 RAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTVANHPN---------GAIVLPGLDCH 265 A K I I G TG P + + G + + Sbjct: 189 SAL--WKDNTLKDSILIFDGFTGFTPIQLLCIEVLMEKAGELYFSLEFSGKNISALGNGK 246 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 +++ E + L+ + E Sbjct: 247 KRESLFYLTEEAIKELYHRGEKLGVEILSPLSLNEIDSRTGEARPEGALLPRFEKIPALQ 306 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFS-----------DVALIEADNEREEAISI 374 + + FL + + + K ++ K +++IEA N E Sbjct: 307 TLVEGFLQGENKESGTKEEQSPKTESMDKSKPYTGGVYPSLPHGISVIEAANISREVEEA 366 Query: 375 AIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDISAGIPLSTTLHSSIL 430 +R ++E ++ ++ D L R + +F I + + I L + S +L Sbjct: 367 CSHIRYLVEERGYRYQEIGVVLPDVELYRDAFFQQGRKFAIPLFLEEDIKLFDSPFSKVL 426 Query: 431 TSLLNAIFKLNDFMAIATLVK-HPLAKFGF-PEKYLSRAKNALELVALRGNKNSYDIMDL 488 S L + K + + ++ P + +G K L Sbjct: 427 RSALEVMEKGLLYDSFFRYLRAFPYRGMEEEDRIDALENEARA-----KGLKGKSAFRSL 481 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 A + + S +E E + ++ KN G Sbjct: 482 FQEESLLEAEALFSLLEENEGSHSLKERIESLESFTEKLMALFQLEEEAIFLKNE--GMD 539 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S+S + +V+ +Q + SK+ E I N E+ Sbjct: 540 SLSQSLERSVSQIQLL-----------------------LSKMKEGLGEIPVNKKEFSAF 576 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS--- 665 + E ++ + + + SR N + G N G+ P K + Sbjct: 577 FDMALSLEKLRQIPATNDQVLVGDLTRSRFHNPKAFLFLGFNAGLIPLPPKKKSLFTEEE 636 Query: 666 ----RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQ--- 717 R L+ E+ Q + + + L + LR S LQ Sbjct: 637 KSFLRQEHCTLSPLAWEESYIQEFYLYHAFLSPKEELYLSYPLRIPKGRGGISPILQEAL 696 Query: 718 ------------------------------RLLVLGGTDFFDNLKKRGQCYLDW------ 741 L L + ++ Y Sbjct: 697 RLFPKLKIRKLEREIQEMQSFSQAKDSLSKELPKLCKKEVLFRSEEEVLPYFHLESFQLL 756 Query: 742 ------------TRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 KL + P + L + S S ++ L + + Sbjct: 757 HSLWQKEEYKKDLEKLLEAIFWENRHLPLSKELSKGLYGEKIRGSVSRLEGLNRCAFFHF 816 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQIIDSHFE 844 R L L + + D G L+H ++ K ++ ++ ++ Sbjct: 817 LRYGLHLQERK--EAEIQAFDLGNLYHKLVESFFKKLKEEKLKGEVLSEHFQEYLNFAIA 874 Query: 845 KENLPPHI--------DIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES 893 + P + + H F + + + L + Q + + ++ Sbjct: 875 ESEQDPEFAPFLEGGRNQYFLHKFKENAKTIL-WVLERQLSGGDFQVEALERDFHYESDT 933 Query: 894 IGIHLTGFADRIDLLKSGF----VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS 948 + G DR+D + + DYK+G+ + + + QL L + L Sbjct: 934 LSF--RGRVDRVDSYLDEEKNYYLKVLDYKSGNTDFSLDLLKAGLQIQLPLYLSILLEEE 991 Query: 949 FSQIDC--RKVANLFYIRLKQKFKIDCITNDKK 979 + A LFY + +++ Sbjct: 992 RKRHPDYKLHPAGLFYFTMDNPSLSFKGQTEEE 1024 >gi|332981095|ref|YP_004462536.1| hypothetical protein Mahau_0501 [Mahella australiensis 50-1 BON] gi|332698773|gb|AEE95714.1| hypothetical protein Mahau_0501 [Mahella australiensis 50-1 BON] Length = 854 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 71/608 (11%), Positives = 174/608 (28%), Gaps = 56/608 (9%) Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 + + I + + + + + R + ++ + + + Sbjct: 228 VKELLRAGYKPSDICIVARD-VVAYRETMGWAFRRRGLPVPGDNASLLDNPMVSSILRWL 286 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + + + + + L D + L+ N L S Sbjct: 287 DSLWDDNVSTEAISDGFYLKPLNLETMDLSLQDTLDAYAQKLIDMLKNS-----GLRFSI 341 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + ++ + D ++ + + E+ + + Sbjct: 342 AERGRLGDIERMAADMKAYEQFVYILQSLVSAQQWNGM------ANAVGLGEFCRTLRDM 395 Query: 613 IDGETVKPKIEKSSTL-FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 G V ++ +L +R L F + + G+ EG +P+ + + + Sbjct: 396 C-GRAVYCDSISYGSVPSLLMPSTARGLAFPVIFMAGMVEGEFPRAIRADWLMKDDERLK 454 Query: 672 LN-LKTAEKYIGQAAHDFEMANGTRHLIY--TRSL-RENNIPTIASRWLQRLLVLGGTDF 727 + T+ + Q F +A + T + + P + S + + + L Sbjct: 455 AEVMPTSRGLLAQERIFFNLAVQAAQRMLFMTYPKVKPDGTPALISSFAEDISALLPDMP 514 Query: 728 FDNLKKRGQCYLDWTRKLDYTTK----QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + LD ++ + + + Q +S + + PY Sbjct: 515 VYEV--SVSDVLDMPSEMRPDEAKSVGYTACGDMQVYIKSKFQNSPFSATAFNEYAMCPY 572 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-----PEINHLMKQI 838 + R+L+L + P D G+++H + E ++ I + I Sbjct: 573 KFFMGRLLELRA-EEDETRPSALDIGSIYHAALKEFMQDYIGVGLVPDKRERYAERLADI 631 Query: 839 IDSHFEKEN-----LPPHIDIIWRHLFHKISHSFL----EHEEKIQSSIEKIFVNIPAKM 889 H + + + + + + ++L E++ + + + + M Sbjct: 632 AIRHIDTSGIKSKYVTEALYHVEKQRMVALLLAWLDAELALEQRHKGAYKPYRLEQAFGM 691 Query: 890 AIESI--------GIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLE 940 I L G DRID + G I DYK G P + +D QL + Sbjct: 692 DGAPPLILSDGRYDIRLIGRIDRIDTAQDGRFIIYDYKKGKSTPDADDIADGMDFQLPVY 751 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS------EKSLKNL 994 A G + + A Y ++ + + ++ L Sbjct: 752 IWAA--GKMLEHEGCTPAGAAYYSIEGAGLSGMMVKKDSGINTPRQRKGVLDDKEWDDML 809 Query: 995 IEIVTLLQ 1002 + + L Sbjct: 810 ERLKSELF 817 >gi|307709427|ref|ZP_07645884.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK564] gi|307619741|gb|EFN98860.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK564] Length = 1098 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 126/974 (12%), Positives = 259/974 (26%), Gaps = 154/974 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ I Sbjct: 84 PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLIELYHEIA 134 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 T + + DL +L +E L + + T L + + L+ A Sbjct: 135 TAQMSFLDLESLTDEDKRAD-------LFLIFEKVTAYL-DQGQLAQRSQLSHLIEAIEN 186 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + T+ ++I G T R++ + G ++ G S Sbjct: 187 DKVSSDFTQIALVIDGFTRFSAEEERIVDLLHG--KGVEIVIGA-------------YAS 231 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +S + Q S+ + L L K + ++ SF Sbjct: 232 KKAYTSPFSEGNLYQASV-EFLHHLASK-------YQTPAQDRSQTHEKMDSFDKASRLL 283 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALIT 393 + D E + ++ + ++EE +A ++R L E K L+ Sbjct: 284 ESSYDFSELTWDVDENDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRILLG 343 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 344 DVASYQLSLKTIFDQYQIPFYLGKSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTG 403 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + +S Sbjct: 404 L----------------------YTDLSQADIDAFEQYIRYLGINCLPAFQQTFTKSHHR 441 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + D E L IL + L + K + VT L Sbjct: 442 KFDLERLNALRLRILTPLETLFASRKQKAENLLQKWNIFLKEGAVTKQLQDLTATIETLE 501 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E K + + + + + +++ ++ + + T+ + Sbjct: 502 QERQAEVWKAFCHVLEQFATVFASSQVSLEDFLALLHSGMSLSQYRTIPATVGTVLVQSY 561 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686 L D + GL + PK L+ + LN T E A + Sbjct: 562 DLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 621 Query: 687 DFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-- 740 + M + + L+ + N + S +LQ L+ G + + +G D Sbjct: 622 RYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHFGFSRKEKKMNHKGLSKEDMG 681 Query: 741 ------------------------------WTRKLDYTTKQPHYKRPKPF---------- 760 R + Q + P Sbjct: 682 SYHSLLSSLVVYHQQGKMSYTEQDLTFIKVLARVMGKKLDQQGLENPALPTSPSSKQLTK 741 Query: 761 -----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 Q S S + + + Y+ + R +L L + PD G H I Sbjct: 742 DTLQALYPTDQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLRPDARSHGNFLHRI 799 Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 ++ + + Q + FE + + ++ + H + Sbjct: 800 FERALQLPDENSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 858 Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925 +IE I + ++ I + G DRID L G + + DYK+ Sbjct: 859 HNPAIETIKEEANFGGKEQAFIQLDNGRSIFVRGKVDRIDRLKADGAIGVVDYKS----S 914 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 Q ++ QL AALK Y+ + + + Sbjct: 915 LTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYLEMAEPVQSLMAVKSLAG 969 Query: 981 YSADELSEKSLKNL 994 + + L Sbjct: 970 AVVEASKSMKYQGL 983 >gi|306829518|ref|ZP_07462708.1| ATP-dependent nuclease subunit B [Streptococcus mitis ATCC 6249] gi|304428604|gb|EFM31694.1| ATP-dependent nuclease subunit B [Streptococcus mitis ATCC 6249] Length = 1091 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 117/978 (11%), Positives = 265/978 (27%), Gaps = 162/978 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPKELRVYGA---------IKQDPQFIQQLVELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 T + + DL +L +E + + Y + + L+ A Sbjct: 127 TAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLTQGSQLSQLIEAIEN 178 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + ++ ++I G T R++ + G ++ I + Sbjct: 179 DKVSSDFSQIALVIDGFTRFSAEEERVVDLLHR--KGVEIV--------------IGAYA 222 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + + + L L K + ++ SF Sbjct: 223 SKKAYISPFTEGNLYQASVEFLHHLGAK-------YQTPAQDRSQTHEKMDSFYKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393 + D E + +K ++ + ++EE +A ++R L ++ + L+ Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHDHPELSYKNFRILLG 335 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + + +S Sbjct: 396 L----------------------YTDLSQADIDAFEQYLRYLGINGLPSFQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT-VTCLQNVCLDEHRKL 572 + D E L + + PL T ++ NL + W L D + Sbjct: 434 KFDLERLNSLRLRV---LAPLETLFASRKQKTENL-LQKWNTFLKNAALSKQMQDLTATM 489 Query: 573 PNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 L E E K + + + + + +++ ++ + + T+ Sbjct: 490 EALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVL 549 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA---- 685 + + + + GL + PK L+ + LN T E A Sbjct: 550 VQSYDLIAPMTANFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSEN 609 Query: 686 ---HDFEMA----NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC- 737 + + M + L+ + N + S +LQ L+ G + + ++ Sbjct: 610 LKKNRYTMLSLVNAARKQLVLSAPSLLNENESKESAYLQELVHFGFSRIEKKIHQKSLSK 669 Query: 738 ---------------------------------YLDWT--RKLDYTTKQPHYKRPKP--- 759 L +KLD P Sbjct: 670 DDMGSYHSLLSSLVAYHQQYETSDTEQDVTFVKVLARVMGKKLDQKGLTNPALPTSPSSK 729 Query: 760 --------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + S S + + + Y+ + R +L L + PD G Sbjct: 730 PLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EEVRLRPDARSHGNF 787 Query: 812 FHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 H I +K + + + FE + + ++ + Sbjct: 788 LHRIFERALKLPAENPFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTT-G 846 Query: 870 HEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTG 921 H + +IE I + ++ + + G DRID L +G + + DYK+ Sbjct: 847 HILRHNPAIETIQEEATFGGKDQSFIQLDNGRNVFVRGKVDRIDRLKANGALGVVDYKS- 905 Query: 922 DNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 Q ++ QL AALK Y+ + + + Sbjct: 906 ---SLTQFQFPNFFNGLNSQLPTYLAALKREEEQNF-----FGAMYLEMAEPVQSLLTVK 957 Query: 977 DKKKYSADELSEKSLKNL 994 A+ + L Sbjct: 958 SLAGAVAEASKSMKYQGL 975 >gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS] gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS] Length = 1091 Score = 154 bits (388), Expect = 1e-34, Method: Composition-based stats. Identities = 119/1050 (11%), Positives = 257/1050 (24%), Gaps = 140/1050 (13%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N V T++A Sbjct: 21 DEQAAVIAAPPGPVVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITGKKSTILPIIKS-LGDVV-------EEKFTADLLLSYNLNPPVSNIQRL 109 + +R+ ++G + ++P I LG F LL + L P+ RL Sbjct: 81 RRVRTRLARLSG--AGLVPGIGPGLGAADDPPTVSTYHAFAGTLLRDHGLLLPIEPETRL 138 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKW 166 L L + + L E + + LA LA+ + D + + Sbjct: 139 LGETELWQWAHRVVCEHPGPL--EIDKTPAAVTDMVLRLAGQLAEHLVDTDELRDTHVEL 196 Query: 167 EDLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIA 213 E L + L R+ A Sbjct: 197 ERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELIPLVDALHRRMQSEKVMDFGMQMAA 256 Query: 214 LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHI 266 R A H + +++ + A +S + +G + D Sbjct: 257 AARLAAAHPQVGAELRARYRVVLLDEYQDTGHAQRVALSALFGGGVDDGLALTAVGDPIQ 316 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 W + + +++ S + +L + VS E RS+ Sbjct: 317 SIYGWRGASATNLPRFATDFPLSDGTPARVLELRTSWRNPPSTLHLANAVSAEARQRSVA 376 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + P L + + + +D R E DE Sbjct: 377 VRSLRPRPGAEPGTIRLALLDNVAAERDWVADEVASRYHAARAE------------DEAP 424 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +A++ A + LT G+ +++ L + + ++L + A Sbjct: 425 PTAAVLLRRNADAAPMAEALTARGVPVEVVGLAGLLGVAEVADVVAMLRLVADPTAGAAA 484 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 V P + G + + G + + + ++ A + P Sbjct: 485 MRTVTGPRWRLGGRDIAALWRRAVELDDGGPGPEATAAEIVARAAPDADAACLADAICDP 544 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + S E V L + L + + + D + Sbjct: 545 GPAEKYSPEGYRRIVALGRELTSLRGHLGIALPDLVTEVRRVLGVDVEARA-------AM 597 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + + + ++ + ++D +G + Sbjct: 598 PVPAGWSGTEHLDAFVDVVADYAGRPGATVGG---LLAYLDAAMERENGLAPADLAVSTE 654 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV------------------- 667 + IL ++ L + + + L+ ++P +L+ Sbjct: 655 RVQILTVHAAKGLEWQVVAVPHLSGRIFPSTAQARTWLTDPADLPPLLRGDRATTTDHGV 714 Query: 668 -----------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + + + + + Sbjct: 715 PVLDTSDVNDRKILSDRINDHKRRLEQRRVDEERRLLYVALTRAEDTLLLSGHHWGATEA 774 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 P S +L+ L + + +P A Sbjct: 775 KPRGPSEFLEELKDIIDRAEQAGQPCGVVDQWAPAPADGEKNPLRDNVKEVLWPADPAGG 834 Query: 768 RTYSFSEIKQLINDPYA-------------------VYARRILKLDFIPHFKKDPDRTDR 808 R + QL+ A + R + + Sbjct: 835 RRTAVDRGAQLVARAMAGAVQTDQDVDGWAADVDALLAERERAAQKPPLTLPAEVSVSTL 894 Query: 809 GTLFHN---IITELIKKRINKNTPEIN--HLMKQIIDSHFEKE----------NLPPHID 853 L + +++ + ++ + P + + +F E + Sbjct: 895 VNLSDDPATVLSRINRRVPTRPDPNASLGTAFHDWVQRYFGAERLFDLDDLPGAVDSDTR 954 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 ++ +F+ + I V +P M I + G D + G Sbjct: 955 RAEAEQLTELQTAFMLSPWAAR---TPIDVEVPFDMVIGET--MVRGRIDAVFADDDGGA 1009 Query: 914 DITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 I D+KTG P A + QL++ A Sbjct: 1010 TIVDWKTGAAPDTPAAAEHAAIQLAVYRLA 1039 >gi|305432275|ref|ZP_07401438.1| conserved hypothetical protein [Campylobacter coli JV20] gi|304444623|gb|EFM37273.1| conserved hypothetical protein [Campylobacter coli JV20] Length = 788 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 25/333 (7%) Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + ++G LESR L+FD +++ NE PK + FL+ ++ L + E+ Sbjct: 422 GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERRENL 481 Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 +E + L + SR+L L FF+ + YL+ Sbjct: 482 QRLYYENLMKNAKKLSISFVEN---EEQTRSRFLDELDFN----FFEEKTTPSKAYLNAL 534 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + P + + SFS + + + R IL+L + Sbjct: 535 KLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYFYRYILELPEARALSDE 594 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 ++G H ++ K N +I + E+E I + +F Sbjct: 595 SKAKNQGNFIHKMLELYYKNYSKNNFN------LKIFNDLLEQEYPKYSISELELEIFKL 648 Query: 863 ISHSFLEHEEKIQS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 F E+E++ + I + I++ I L G DRID L+ I DYK Sbjct: 649 KFIQFAENEKEHFKLGYKVIEQEEEHHKALNIQNHTIRLKGIVDRIDKLEDKHF-IIDYK 707 Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G P+K QL+ A + ++ Sbjct: 708 SGKVPEK-------SFQLAFYKALCDENAEAKF 733 >gi|296138860|ref|YP_003646103.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] gi|296026994|gb|ADG77764.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162] Length = 1111 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 125/1045 (11%), Positives = 267/1045 (25%), Gaps = 128/1045 (12%) Query: 46 SVTIYVPTKRAIQEL----RSEFIEITGKKSTILPIIKSLGDVV------------EEKF 89 V T++A Q+L R + + L I G++ + Sbjct: 76 QVLGLTFTRKAAQQLMIRVRKRLSRLGAAPA--LERIDPSGELRVLLRTVEPEISTYHAY 133 Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 L Y + PV RL+ I + + D E+ + + L+ Sbjct: 134 AGRLHGDYGMLLPVEPTVRLVSETERWQIAFDVVTGW--DEALETDKNPATLTEQVLGLS 191 Query: 150 KNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI------------ASKY 194 LAD + D +E + + E L L A LK + Sbjct: 192 GALADHLVTPDQLEASDDELERLIGLLPPGPRQRAAPNAALLKAADVQEQRRALIPLVRA 251 Query: 195 WTERLVELNASSPV-----GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + Q+AL + L + G +++ + A L++++ Sbjct: 252 VAAEMRVREVLDFGSQMGLAAQLALANPDVAALERSRFGAVLLDEYQDTGHAQRMLLASL 311 Query: 250 ANHPNG-AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 P G A V D W + + +++ + +LL Sbjct: 312 FGGPGGAAAVTAVGDPIQSIYGWRGASAANLPRFATDFPQADGMPAPRRELLTSWRNPTG 371 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + VS ++ R + +S+ PD L +I+ Sbjct: 372 ALSLANAVSEDLRRRGVPVSELRARPDAPSGDLRIAL------------HSTVIDERTWV 419 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +AI+ R+ + A++ + + L G+ +++ L T Sbjct: 420 ADAITALWRGRLDAGDPPPTVAVLVRRNADSAGLAAALGERGVPVEVVGLGGLLHTPEVQ 479 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIM 486 L +LL + A L+ P + G + RA+ Sbjct: 480 DLVALLRLAVEPLAGTAAMRLLTGPRWQLGAADLRALWNRARRIAHGTGRAATGLVTTAD 539 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 +L + + + + D + + + I + + Sbjct: 540 ELDQALDATLPAELLDAAGLGDAIADPGPDSDYSAAGLAKIRSLDREIRNVRERLGH-PL 598 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +++ ++ ++ + E + + E + + ++ Sbjct: 599 PEVVAEAERVLGVSIETRIRAARQLGGRATGREHLDAFADVVVSYAERPTATLPGLLSFL 658 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS- 665 + G T + + +L ++ L +D + + L+EG++P N A +LS Sbjct: 659 AAAEAVEGGLTPGDVEVATDRVQVLTVHSAKGLEWDVVAVPHLSEGIFPSNRAMPTWLST 718 Query: 666 ---------------------------------------RVMQSDLNLKTAEKYIGQAAH 686 ++ L + Sbjct: 719 PAELPPELRGDVAEPGESDGVPRLDLSECNNRKDLEDALDTHRAALKAMNMHEDERLFYV 778 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GT L + SR+L R + Sbjct: 779 AVTRTQGTLLLSGHYWSEDVKTAKAPSRFLDRAREHAPEAVGHWAATPVDDAENPLEAEP 838 Query: 747 YTTKQPHYKRPKPFPPLEAQPRT---------YSFSEIKQLINDPYAVYARRILKLDFIP 797 P +A + ++ + DP+ A L Sbjct: 839 VQAPWPRDFLAAHRADADAGAALVLAALADPDGTEADARAPGEDPHGWAADVTALLAERA 898 Query: 798 H-------------------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + + + T L ++ Sbjct: 899 RQAAMDLEVAVPREVSVSQLVELRRSPETFARRLRRPVPYRPNPYARRGTAFHAWLERRY 958 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 S + P ++ EE ++ + + +P + I + G + Sbjct: 959 GASRLLDFDELPGAADGDAGADENLALLQRRFEESEWAARTPVDIEVPFE--IAAAGTVV 1016 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G D + G + D+KTG P + ++ QL+ A + +V Sbjct: 1017 RGRMDAVFRDPGGGFTVVDWKTGVRPSEPADERAAAVQLAAYRLAWAR--LRDVPVDEVR 1074 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSA 983 F+ + D Sbjct: 1075 AAFFYVRSGETVSPSDLLDHAGLEL 1099 >gi|169237546|ref|YP_001690750.1| nuclease subunit B-like protein [Halobacterium salinarum R1] gi|167728773|emb|CAP15641.1| nuclease subunit B homolog [Halobacterium salinarum R1] Length = 1018 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 94/782 (12%), Positives = 211/782 (26%), Gaps = 145/782 (18%) Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITADRNLARRVK 403 P+ + E E +A LR L + + + + V+ Sbjct: 235 RPDPDTAPVPDGLRWRELPTPEREIRFVARELRTELANGRDPDDLAVVAPGTEAYSGYVE 294 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 F I +A L+ T S++ LLN + +L+ +PL ++ Sbjct: 295 DTFDTFDIPHVTTAASQLNQTFAGSVVHDLLNLAEPDPRAEDLTSLLANPLVDIVDTDQA 354 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 T S L ++ + L Sbjct: 355 N-------------------------------AVTAAARRRDTVSVSPLLDDVDDEVASL 383 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 V+ +L + PL T + + D L E + Sbjct: 384 VEELLATLEPLRTDDIEDATETLRRLMDDRFDLEAATEDYASGAEQAVEQRAY------D 437 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L E+ + + ++ P+ + ++G L++R+ +F+ Sbjct: 438 LVDEVLSSFESLAAVNSDLSPLALFTRAFDGVAIRVPQRAAGGHVEVMGLLDARMRSFEK 497 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L GL +P + F + +D T ++ + + L T Sbjct: 498 VFLVGLTSEHFPVTPERPAFFEEMTDADPRFDTGDERLRGRYLFATLLANVDELTITTPE 557 Query: 704 -RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY-------- 754 ++ + S L L + G + D + R D R++ T + Sbjct: 558 TGDDESAVVRSPVLDELQRVTGIEPEDGVDDRVGSREDLQRRVAATADRRAAVSHAGDRG 617 Query: 755 ---------------------------------KRPKPFPPLEAQPRTYSFSEIKQLIND 781 ++ YS S I++ + Sbjct: 618 DLSPEQTKRTDRGLHCADNRGTAGLSEHDGVLEPETVDEVYPPSEREPYSASRIERYVEC 677 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------EI 831 + YA +L ++ + P + G+ H+++ ++ ++ Sbjct: 678 GFKFYADEVLGIEDPDDIEVVPTPLETGSYVHDVLERFFADLQDETEDGVDLTEFDRHDL 737 Query: 832 NHLMKQIIDSHFEKENLPPH--IDIIWRHLF-----------------------HKISHS 866 +++I + + W+ + + Sbjct: 738 ATHLREIAVEELQDTDFEYDGLFYERWKAELFAGLGDGESVPYEAGSKPHDAPEQGLFAT 797 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIE-------------SIGIHLTGFADRIDLLKSG-- 911 FL++E S+ P + + + G+ DR+D+ + G Sbjct: 798 FLDNELSRDSAGRPHLFEAPFGEGLPDSDAGPFTVERPDGSTVSIRGYIDRVDVSRDGEQ 857 Query: 912 -FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + + DYKTG P QL + A + + + Y +L+ Sbjct: 858 PTLTLYDYKTGRAPYMTKTTGGTKFQLPIYLLAAAEVVDGDLFEQGSLSATYYQLRPPND 917 Query: 971 IDCITNDKKKYSAD--------ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + + K+ ++ + + L + E + + + + Sbjct: 918 LKVPRGLESKFDSEVDLRRFLNNVVPEWLGQIDEAIGKGRFHTTVLSARGA----NCRYC 973 Query: 1023 EY 1024 +Y Sbjct: 974 DY 975 >gi|28572401|ref|NP_789181.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] gi|28410532|emb|CAD66918.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] Length = 993 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 113/946 (11%), Positives = 238/946 (25%), Gaps = 134/946 (14%) Query: 46 SVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 V + P + L ++ +S L + + + Sbjct: 55 EVLVLAPGRLLANRLNGIALPALLKEKKVRSGRL--VVTPASFAFRIVQNSM--KGERPT 110 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 +S +A I S A + + I+ + Sbjct: 111 LLSGADEDQVIAETIAQNCEL---------------FKSSYARSPNFRSRMRFFIEDLSR 155 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 L + W A + + + NA + V A+ Sbjct: 156 HGIDPAHLGKIDR------WKTYAALI----EKYRLARTSNNAFTAVEIIERA--AQLAS 203 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 I++ + RL S +A I+ D A+ + + Sbjct: 204 TGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDK----AVARSASPSIFLD 259 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 S + + + ++ + +G + + R S Sbjct: 260 FSEKLFV---LKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQSFNSSIL---------- 306 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398 V + + + IA R + ALI R+ Sbjct: 307 --------------EGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQRSS 352 Query: 399 ARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLA 455 A L RFG+ + I G+ LS + + + + + L+ P+ Sbjct: 353 AEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTGKTLVKLLLSPIG 412 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 F L + R + ++ +R+ + Q Sbjct: 413 GFD------VFLMRKLTIELKRIAPKNI------QVLNERLLWAFHAYRKLQTQDTDEVY 460 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 LA + + + L++ + +L + W + L Sbjct: 461 RVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIW--HVYSFLNLKSAVSKEPWQT- 517 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFIL 631 + + L + + + K + + +I + I V EK + IL Sbjct: 518 -SKVSHRVLEEVIALQKLADAVSKKDPLCSAGLILQKIINAEVPVDNLSIREKRGCVTIL 576 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------SRVMQSDLNLKTAEKYIGQAA 685 S + +++ + +T +P L + L K A + Sbjct: 577 TPASSVGYEYRAVVITDIQGSHKMDSTQLDPELALADINNIPFSRYLESKLAGRRHNLLR 636 Query: 686 HDFEMANGTRH--------------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 ++ + + + S L + D Sbjct: 637 TLYQAVTRSTSDLLVSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLE 696 Query: 732 KKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + G + Q Y + S + + P Sbjct: 697 RDPGNTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSALDKFHTCPLGW 756 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + D + + + T+ GT+ H + EL N E + + Sbjct: 757 F------TDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYAYAKLREA-DF 809 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAIE---SIGIHLTGF 901 E+ + + I +++ + + I ++G Sbjct: 810 ESRW--VLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSFSFDLNVFKDRSIMISGQ 867 Query: 902 ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946 DR++ L SG + I D KTG + K A+ + QLS A++ Sbjct: 868 IDRLERLSSGEIRIVDLKTGSSLLSKNDAES--NLQLSAYQLAVEH 911 >gi|289167910|ref|YP_003446179.1| exonuclease RexB [Streptococcus mitis B6] gi|288907477|emb|CBJ22314.1| exonuclease RexB [Streptococcus mitis B6] Length = 1091 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 124/974 (12%), Positives = 258/974 (26%), Gaps = 154/974 (15%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P +++ + P ++ + L ++ + Sbjct: 76 PAKTSLDDIGLGMAFYKCLAELDPKDLRVYGA---------IKQDPQFIQQLIELYHEMT 126 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA- 219 + + DL +L +E + + Y + + L+ A Sbjct: 127 KAQMSFLDLESLTDEDKRAD---LLLIFEKVTAYLNQ-----GQLAQGSQLSHLIEAIEN 178 Query: 220 -EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + T+ ++I G T ++ + G ++ G S Sbjct: 179 DKVSSDFTQIALVIDGFTRFSAEEEWIVDLLHG--KGVEIVIGA-------------YAS 223 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +S Q S+ + L L K + Y ++ SF Sbjct: 224 KKAYTSPFAEGNLYQASV-EFLHHLASK-------YQTPAQDYSQTHEKMDSFDKASRLL 275 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALIT 393 + D E + +K ++ + ++EE +A ++R L E K L+ Sbjct: 276 ESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHLRILLG 335 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + +K ++ I + ++ + + S+L + L++ Sbjct: 336 DVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTG 395 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L + + DI + + +S Sbjct: 396 L----------------------YTDLSQTDIDAFEQYIRYLGINGLPAFQQTFTKSHHG 433 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + E L IL + L + K S + +VT + Sbjct: 434 KFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKESSVTKQLQDLTATMEAVE 493 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 E K + + + + N +++ ++ + + T+ + Sbjct: 494 QERQTEVWKAFCHVLEQFATVFAGSQVNLEDFLALLHSGMSLSQYRTIPATVDTVLVQSY 553 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA-------H 686 L D + GL + PK L+ + LN T E A + Sbjct: 554 DLIAPLTTDFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKN 613 Query: 687 DFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG------------------- 723 + M + + LI + N + S +LQ L+ G Sbjct: 614 RYTMLSLVNSARKELILSAPSLFNESESKESAYLQELVHFGFSRKEKRMNHKGLSKEDMG 673 Query: 724 ---------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKP------- 759 G L +KLD + P Sbjct: 674 SYHSLLSSLVAYHQQGEPSDREQDLTFVKVLARVMGKKLDQQGLENPALPTSPSSKQLAK 733 Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 Q S S + + + Y+ + R +L L + PD G H I Sbjct: 734 DTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EELRLHPDARSHGNFLHRI 791 Query: 816 ITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 ++ + + Q + FE + + ++ + H + Sbjct: 792 FERALQLPDEDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTT-GHILR 850 Query: 874 IQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPK 925 +IE I + ++ + + G DRID L G + + DYK+ Sbjct: 851 HNPAIETIKEEANFGGKEQSFIQLDNGRSVFVRGKVDRIDRLKADGAIGVVDYKS----S 906 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 Q ++ QL AALK Y+ + + + + Sbjct: 907 MTQFQFPHFFNGLNSQLPTYLAALKKEGEQNF-----FGAMYLEMAEPVQSLMVVKSLAG 961 Query: 981 YSADELSEKSLKNL 994 + + L Sbjct: 962 AIVEASKSMKYQGL 975 >gi|83816080|ref|YP_445924.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855] gi|83757474|gb|ABC45587.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855] Length = 1073 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 112/933 (12%), Positives = 244/933 (26%), Gaps = 108/933 (11%) Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR--LMST 248 + ++L + L AE + + +A Sbjct: 130 LAARLLKQLQRQGRLDGLPGPRQLADTVAEAIETLRRNGAPLADVQARAQTEDASATFRV 189 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 VA+ G L LD H + + ++ + ++ +D L + + Sbjct: 190 VADCYEG--YLDALDAHGLYDDAQVLRWAAESVREATPPAVEASVVAVCDAVD-LPEEAQ 246 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 R E + R PP T+ R D +V + A Sbjct: 247 QFVRAVRAGAEAFYRIGRPQPEAPPPQTAAARFVDAPLPPGETANGTVQEVHVRRAVGSA 306 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +E ++ L + + + ++ + R G+ + I+ G+ T + Sbjct: 307 KEVDALVRDLLDADVPFDEVEIAVAGEQPYVSLIADRAARVGLPVSIATGVSAGQTRTGT 366 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDIM 486 L + L + + D + +++ + +LE + + Sbjct: 367 ALLAFLEWVTEDFDPAVLIRMLRSGHLRIDRMRSEMENETGAGSLEAHEVATLLAARRYE 426 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + E + + Sbjct: 427 PGRDGYAKALGAAIGELEDRIAELEEQGLEPERDRERRRALRFVARLVEALLDLVPREAS 486 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIE 604 ++ + V V K +E L +++ +A+ + Sbjct: 487 VQEMAARAQRFVERFGPVDPPPEDKPEADRTLDEAGRTVLWQRLDRLVRVPVDYEASGPQ 546 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ R ++G+ V+ + + T ++ + L + G++ + L Sbjct: 547 LAALLRRWLEGQYVRAEHPRPGTAHVVPLESAGYGARSHLYVVGMDSDTLSTAAVEGAML 606 Query: 665 SRVMQSDL------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR----ENNIPTIASR 714 + L L +A E A + + R ++ S Sbjct: 607 RDPDRRALSDSMDGELPERRSASDEAQWHHEQALARHTGVLSLYTRIFDLDSGEERYPSP 666 Query: 715 WLQRLLVLGGTDFFDN-------------------------------------------L 731 RL + Sbjct: 667 LFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTAFRNRGGEGRGTGTARDALSDCYP 726 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-----YSFSEIKQLINDPYAVY 786 R R+ D T +P L+ S ++ PY + Sbjct: 727 WLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRDRENGGPMSAGRLETFAETPYLYF 786 Query: 787 ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITEL---IKKRINKNTPEINHLMKQII 839 + +L ++ + D + RG++ H +++ + E L++ + Sbjct: 787 LKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAFMTTLREGDERPAAEHEPLLEDTL 846 Query: 840 DSHFEKE-----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------- 887 + F+ E ++ + FL E + ++ + Sbjct: 847 QAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAETAHCRTHAPLYHEVGFGYGPYRR 906 Query: 888 --------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---AQKLIDPQ 936 + +E + L G DR+D G + + DYKTG E Q Sbjct: 907 QEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVWDYKTGRASSFEEGDPVADGAQLQ 966 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 +L A AL + V Y + + + D +Y + E+ L L Sbjct: 967 WALYAYALS-----TLTDETVGTSGYYFPTTRERGTRLAFDPGRYRTE--VERLLDRLSS 1019 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + +G P R + YD L R Sbjct: 1020 LAA---SGSFPMHPRARYLNAWRYRG-YDRLFR 1048 >gi|294507834|ref|YP_003571892.1| ATP-dependent nuclease [Salinibacter ruber M8] gi|294344162|emb|CBH24940.1| ATP-dependent nuclease [Salinibacter ruber M8] Length = 1073 Score = 153 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 110/933 (11%), Positives = 244/933 (26%), Gaps = 108/933 (11%) Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR--LMST 248 + ++L + L AE + + +A Sbjct: 130 LAARLLKQLQRQGRLDGLPGPRQLADTVAEAIETLRRNGAPLADVQARAQTEDASATFRV 189 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 VA+ G L LD H + + ++ + ++ +D L + + Sbjct: 190 VADCYEG--YLDALDAHGLYDDAQVLRWAAESVREATPPAVEASVVAVCDAVD-LPEEAQ 246 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 R E + R PP T+ R D +V + A Sbjct: 247 QFVRAVRAGAEAFYRIGRPQPEAPPPQTAAARFVDAPLPPGETANGTVQEVHVRRAVGSA 306 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +E ++ L + + + ++ + R G+ + I+ G+ T + Sbjct: 307 KEVDALVRDLLDADVPFDEVEIAVAGEQPYVSLIADRAARVGLPVSIATGVSAGQTRTGT 366 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE--KYLSRAKNALELVALRGNKNSYDIM 486 L + L + + D + +++ + +LE + + Sbjct: 367 ALLAFLEWVTEDFDPAVLIRMLRSGHLRIDRMRSEMENETGAGSLEAHEVATLLAARRYE 426 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + E + + Sbjct: 427 PGRDGYAKALGAAIGELEDRIAELEEQGLEPERDRERRRALRFVARLVEALLDLVPREAS 486 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG--KTLSSLFSKIIETGSCIKANAIE 604 ++ + V V K +E L +++ +A+ + Sbjct: 487 VQEMAARAQRFVERFGPVDPPPEDKPEADRTLDEAGRTVLWQRLDRLVRVPVDYEASGPQ 546 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ R ++G+ V+ + + T ++ + L + G++ + L Sbjct: 547 LAALLRRWLEGQYVRAEHPRPGTAHVVPLESAGYGARSHLYVVGMDSDTLSTAAVEGAML 606 Query: 665 SRVMQSDL------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR----ENNIPTIASR 714 + L L +A E A + + R ++ S Sbjct: 607 RDPDRRALSDSMDGELPERRSASDEAQWHHEQALARHTGVLSLYTRIFDLDSGEERYPSP 666 Query: 715 WLQRLLVLGGTDFFD-------NLKKRGQCYLDWTRK----------------------- 744 RL + + R W Sbjct: 667 LFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTAFRNRGGEGRGTGTARDALSDCYP 726 Query: 745 -LDYTTKQPHYKRPKPFPPLEA-----------------QPRTYSFSEIKQLINDPYAVY 786 L ++ + + S ++ PY + Sbjct: 727 WLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRDRENGGPMSAGRLETFAETPYLYF 786 Query: 787 ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITEL---IKKRINKNTPEINHLMKQII 839 + +L ++ + D + RG++ H +++R + E L++ + Sbjct: 787 LKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAFMTTLRERDERPAAEHEPLLEDTL 846 Query: 840 DSHFEKE-----NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------- 887 + F+ E ++ + FL E + ++ + Sbjct: 847 QAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAETAHCRTHAPLYHEVGFGYGPYRR 906 Query: 888 --------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET---AQKLIDPQ 936 + +E + L G DR+D G + + DYKTG E Q Sbjct: 907 QEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVWDYKTGRASSFEEGDPVADGAQLQ 966 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 +L A AL + V Y + + + D +Y + E+ L L Sbjct: 967 WALYAYALS-----TLTDETVGTSGYYFPTTRERGTRLAFDPGRYRTE--VERLLDRLSS 1019 Query: 997 IVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + +G P R + YD L R Sbjct: 1020 LAA---SGSFPMHPRARYLNAWRYRG-YDRLFR 1048 >gi|188585468|ref|YP_001917013.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350155|gb|ACB84425.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1048 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 85/761 (11%), Positives = 196/761 (25%), Gaps = 121/761 (15%) Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + L A E E + +R + L ++ + + ++ I + Sbjct: 242 EQIDLFSASGESVEVKQVFSWIRDGCLPFDRTIILYSSSSPYSELIYKLSEKYQIPVTFG 301 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY---LSRAKNALEL 473 GI + T +L LL I + ++ L G + + + Sbjct: 302 EGIMIQNTKPGKLLFLLLEWINSGYRVTDLNKILDENLLYIGEGTLSGYKIRKLLREASI 361 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 R + L + ++ + + L I T Sbjct: 362 GWSRNRYFHRLEKVISEL---ENLEELDDNAIDDNDHSRHQRLLGEYRALYRIINDIFTC 418 Query: 534 LV-TYKTNKNSTCGNLSISDWTKLTV----------------TCLQNVCLDEHRKLPNLW 576 L S+S + + L L Sbjct: 419 LDYQTDEQDPEIISLASLSGCIARFIDEFGQVTSQFDKEAQQRIRDELELISQISKSYLE 478 Query: 577 FEEEGKTLSSLFS------KIIETGSCIKANAIEWIDIITR---LIDGETVKPKIEKSST 627 ++ + L ++ + G + ++ LI + + + Sbjct: 479 IDQAIERLKESIENIRVGQELPQAGHIHVDHYQNGWWMLRDNVYLIGFDADRFPGNRQED 538 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 +L ++ ++ L E + + Sbjct: 539 PILLDEERKQISDWLPLGQDRPKENYQLVLDMLKGIADMTGHMENGHTENRHRENGHREN 598 Query: 688 FEMANGTR-HLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFDN--------LKKRGQ 736 + + ++ + S + S L ++ D + + G Sbjct: 599 VHNVHKEKGQMVISYSSFDTTEHKEKFPSSLLLQVYRQISGDSDADYTTLQNYLMPPEGM 658 Query: 737 CYLDWTRKLDYTTKQPH------------------------------------------- 753 + +D Sbjct: 659 IPKRQSEVMDEIDWWLANYVEYVENGQHLQLNHIVYCYPDLQKGVEAFQNRLSPEFTVYD 718 Query: 754 --YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP----DRTD 807 + + + S + ++ L PY + ++L ++ + DP D Sbjct: 719 GNVSADRTAIDPRERAKPISPTRLELLGRCPYGYFLNQVLGIEPPEDIEFDPGKWLDSLT 778 Query: 808 RGTLFHNIITELIKKR--INKNTPE------INHLMKQIIDSHFEKENLPPHI-DIIWRH 858 RG+L H I + ++ + E + + +++ID E+ P + + Sbjct: 779 RGSLLHTIFEQFYRELTLNQEKPQEHKHSEYLTEMAEELIDQQLEELPPPSDLVYQYEKD 838 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAK-------------MAIE-SIGIHLTGFADR 904 + FL E++ S I+ + + + ++L+G DR Sbjct: 839 DLLNSALVFLRSEQEYFESSRPIYFELYFGRSGDEQEHQDMVPVELPSGKRLYLSGKIDR 898 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQK---LIDPQLSLEAAALKAGSFSQID--CRKVAN 959 +DL + G DYKTG ++ Q +L A AL+ KV Sbjct: 899 VDLDQDGNYLAYDYKTGSTYGYSESEYYKGGRQLQHALYALALEQILQENYPHNNIKVTG 958 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 Y+ K + + +++ E L+++++ Sbjct: 959 AGYLFPTVKGEGVRYIRYYEDNDREQILELV-DKLLDLLSQ 998 >gi|332359410|gb|EGJ37230.1| exonuclease RexB [Streptococcus sanguinis SK355] Length = 1093 Score = 152 bits (384), Expect = 3e-34, Method: Composition-based stats. Identities = 129/922 (13%), Positives = 256/922 (27%), Gaps = 135/922 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L D+ ++T + + DL L+ + L T L + + S Sbjct: 113 QFIQQLMDLHHELQTAQMSFADLEFLEEPEKRED-------LVKIFTASTAALNKGDFDS 165 Query: 207 PVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 A + + ++I G T L+S + G ++ G + Sbjct: 166 SSQIAAFTQHILAGDTDEQLADLALVIDGFTRFSAEEEYLVSLLHR--KGVEIVIG--TY 221 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +S L KL + +K + + + Sbjct: 222 ASQKSYRAAFREGNLYQASVDF--------LRKLAEDYQVKPDYIPHAEAEDAFGRISKV 273 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 + S+ T + TD S + + N++EE +A ++R + + Sbjct: 274 LESRYDFSESTVSLSETDR------------SQLQIWATMNQKEELEYVAKSIRQRVHDG 321 Query: 385 -NKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K L+ D + ++ I + ++ + SL Sbjct: 322 VRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQ 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L+K L E EL DI L D A + Sbjct: 382 LEDLLNLLKTGLYGDFTQE----------ELDHFEQYLRFADIKGAAKLAKDFTANSQGK 431 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + L L + + C + ++ + Sbjct: 432 FDLDRLNHIRLRVMTPLQDFFKSRSQTASGLLAKFTEFVQAACLSDNLKALLQ------- 484 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + EE K S + + + + K +++ +I + + Sbjct: 485 -----GESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTVP 539 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L + GL + +PK LS ++ LN T + Sbjct: 540 ATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAEL 599 Query: 683 QAA---------HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLV---------- 721 Q A + T+ L+ + N + S +L L Sbjct: 600 QIASSENLKKNRYTALSLINSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVK 659 Query: 722 ---------------------LGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP 759 L + Q + R L P+ Sbjct: 660 KPQASSDDIGSYRALLSQIIELHQEEIDREWTTEEQTFWAVAVRVLRKKLVAEGISIPQI 719 Query: 760 FPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + QP S S + + YA + + +L+L + PD Sbjct: 720 SKELKTESLQPETLQALYPQEQPLRLSASALNEYFQHQYAYFLKYVLRLQ--EEWTIHPD 777 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHK 862 G H I ++++ + + + E E++ R L Sbjct: 778 ARSHGIFLHRIFEKVLQDDSSDDFDRRLAQAMEETSREAEFESIYSESGQTRFSRQLLLD 837 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL-KSGFVD 914 + + + IE I + +E + ++G DRID L K+ + Sbjct: 838 TARAT-GRVLAHPTGIETIGEETGFGSASKPFLTLENGRAVTVSGKVDRIDRLTKTESLG 896 Query: 915 ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 + DYK+GD E ++ QL AA++ + Q D + Y+++ D Sbjct: 897 VVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKG-IFGAMYLQMT-----DP 950 Query: 974 ITNDKKKYSADELSEKSLKNLI 995 I K + + +S+K L Sbjct: 951 IVVLKDTKTLADAVNQSMKPLQ 972 >gi|57169066|ref|ZP_00368193.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|57019524|gb|EAL56215.1| conserved hypothetical protein [Campylobacter coli RM2228] Length = 788 Score = 152 bits (384), Expect = 3e-34, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 118/333 (35%), Gaps = 25/333 (7%) Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + ++G LESR L+FD +++ NE PK + FL+ ++ L + E+ Sbjct: 422 GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERRENL 481 Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 +E + L + SR+L L FF+ + YL+ Sbjct: 482 QRLYYENLMKNAKKLSISFVEN---EEQTRSRFLDELDFN----FFEEKTTPSKAYLNAL 534 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + P + + SFS + + + R IL+L + Sbjct: 535 KLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYFYRYILELPEARALSDE 594 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 ++G H ++ K N +I + E+E I + +F Sbjct: 595 SKAKNQGNFIHKMLEFYYKNYSKNNFN------LKIFNDLLEQEYQKYGISELELEIFKL 648 Query: 863 ISHSFLEHEEKIQS-SIEKIFVNIPA--KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 F ++EE+ + I + I++ I L G DRID L+ I DYK Sbjct: 649 KFIQFAKNEEEHFKLGYKVIEQEEEHHKTLNIQNHTIRLKGIVDRIDKLEDKHF-IIDYK 707 Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 +G P+K QL+ A + ++ Sbjct: 708 SGKVPEK-------SFQLAFYKALCDENAEAKF 733 >gi|28493487|ref|NP_787648.1| DNA helicase [Tropheryma whipplei str. Twist] gi|28476529|gb|AAO44617.1| DNA helicase [Tropheryma whipplei str. Twist] Length = 993 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 113/946 (11%), Positives = 238/946 (25%), Gaps = 134/946 (14%) Query: 46 SVTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 V + P + L ++ +S L + + + Sbjct: 55 EVLVLAPGRLLANRLNGIALPALLKEKKVRSGRL--VVTPASFAFRIVQNSM--KGERPT 110 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 +S +A I S A + + I+ + Sbjct: 111 LLSGADEDQVIAETIAQNCEL---------------FKSSYARSPNFRSRMRFFIEDLSR 155 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 L + W A + + + NA + V A+ Sbjct: 156 HGIDPAHLGKIDR------WKTYAALI----EKYRLARTSNNAFTAVEIIERA--AQLAS 203 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 I++ + RL S +A I+ D A+ + + Sbjct: 204 TGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDK----AVARSASPSIFLD 259 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 S + + + ++ + +G + + R S Sbjct: 260 FSEKLFV---LKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQSFNSSIL---------- 306 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398 V + + + IA R + ALI R+ Sbjct: 307 --------------EGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQRSS 352 Query: 399 ARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKL--NDFMAIATLVKHPLA 455 A L RFG+ + I G+ LS + + + + + L+ P+ Sbjct: 353 AEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTGKTLVKLLLSPIG 412 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 F L + R + ++ +R+ + Q Sbjct: 413 GFD------VFLMRKLTIELKRIAPKNI------QVLNERLLWAFHAYRKLQTQDTDEVY 460 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 LA + + + L++ + +L + W + L Sbjct: 461 RVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIW--HVYSFLNLKSAVSKEPWQT- 517 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP----KIEKSSTLFIL 631 + + L + + + K + + +I + I V EK + IL Sbjct: 518 -SKVSHRVLEEVIALQKLADAVSKKDPLCSAGLILQKIINAEVPVDNLSIREKRGCVTIL 576 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL------SRVMQSDLNLKTAEKYIGQAA 685 S + +++ + +T +P L + L K A + Sbjct: 577 TPASSVGYEYRAVVITDIQGLHKMDSTQLDPELALADINNIPFSRYLESKLAGRRHNLLR 636 Query: 686 HDFEMANGTRH--------------LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 ++ + + + S L + D Sbjct: 637 TLYQAVTRSTSDLLVSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLE 696 Query: 732 KKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + G + Q Y + S + + P Sbjct: 697 RDPGNTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSVLDKFHTCPLGW 756 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + D + + + T+ GT+ H + EL N E + + Sbjct: 757 F------TDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYAYAKLREA-DF 809 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEK-IQSSIEKIFVNIPAKMAIE---SIGIHLTGF 901 E+ + + I +++ + + I ++G Sbjct: 810 ESRW--VLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSFSFDLNVFKDRSIMISGQ 867 Query: 902 ADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946 DR++ L SG + I D KTG + K A+ + QLS A++ Sbjct: 868 IDRLERLSSGEIRIVDLKTGSSLLSKNDAES--NLQLSAYQLAVEH 911 >gi|183603705|ref|ZP_02716657.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC0288-04] gi|183573323|gb|EDT93851.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC0288-04] Length = 1099 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 250/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + GA ++ G Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|289449624|ref|YP_003475637.1| hypothetical protein HMPREF0868_1380 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184171|gb|ADC90596.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1188 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 141/1141 (12%), Positives = 296/1141 (25%), Gaps = 171/1141 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 + G + + + I VP E+ ++++ GK S +L Sbjct: 34 DGAVGGNEADGRSGLGVGGKVAGRGFIVVPDN-CAFEVEQHYLQLAGKGSLLL-----AE 87 Query: 83 DVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 + + F L N+ + + L R++ R++LP + K + L Sbjct: 88 ALGWQHFFLRLADELNVPSANLLDKSGQAALLNRILHAHRDELPFLGKLVNKRGFL---- 143 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAADFLKIASKY 194 + DI+ DL AL + D+ Sbjct: 144 ---------HQIQDILLEFRRYNVGAADLCALGKKLVEHPVEGLSEPEKILDW-SRLLGL 193 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + + E N G L + + AG T + +++ + Sbjct: 194 FESEIAENNLPDQKGRLRLLAEWLESAVKSKKARAM--AGDTAAELRDEVVLNYI---CQ 248 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G+ + + +N + + L+I ++ Sbjct: 249 TNFWFWGIGDDYLLTGDEKRIILALSGLQANLYFYFAAESLTETTRRNLNIAGVVIENEA 308 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNT--DILENKIPNIQKCFSDVALIEADNEREEAI 372 ++ S + + +++ L + DV + + EA Sbjct: 309 EMNGFRSSADYCFSSAAIDFVVAELPVRKVRFLPGSVALRSGSPLDVVTVTVPDMTVEAE 368 Query: 373 S-IAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 + IA LR+ L E ++ A+I +D +L + L + G+ + + + LS + + Sbjct: 369 TTIAELLRLHLTENIPWQEMAIICSDESLHEALNLAGQQLGVPLQDAGKLKLSDSPVFTY 428 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE----LVALRGNKNSYDI 485 L +L + + A+ L++ L E ++ + + Sbjct: 429 LNALFDLPRRNWSLPAVLNLLRSGLTGATTDEIDVAENYWLANGLGYTAIFDAKRYNSAA 488 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 D+++ V + + + D +V + Sbjct: 489 TDVEADVDADVKADAAMDAAAALDTGNVLTLNAEPESVADDAAVAWQLVVKHLRPVYEFI 548 Query: 546 GNLSIS-------DWTKLTVTCLQNVCLDEHRKLPNLWFEEE-----GKTLSSLFSKIIE 593 L + D L + R +E + + + Sbjct: 549 TALPLELPCREMLDRLNLFFQAVDLTGTLRQRMADAPAGQEILYSKGWQEFFKAARTLRD 608 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + + +I+ L+ TV + S + I E N + + +E + Sbjct: 609 LQGDVVEQFADLGEILADLLTDLTVNIVPSRLSQVKIGSATEILSANLKVIYVLRADEEL 668 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM--------ANGTRHLIYTRSLRE 705 + L ++ L + GQ D+ A+ + ++R+ + Sbjct: 669 SGCSAYSG-LLRDSERAALGKLLQINWPGQHQSDYWRNASVWRRLADAASKIYFSRN--D 725 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK---------- 755 ++ + R + K W K QP Sbjct: 726 GEFESVLQQLASRRQINLLHQVTLADKLSPNDLRYWYPKFRRQDYQPTATGEVITSLNVS 785 Query: 756 --------------------------------RPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + + S S +++ PY Sbjct: 786 ADGASENGGADKGWRENGASEKIHSVSRQVVLSDEMKMAALPLTQKLSVSRLEKYAACPY 845 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--------------IKKRINKNTP 829 +L + P TD G L H I+ + + + ++ Sbjct: 846 QYLVDYLLMARPREEWN--PQVTDVGVLMHGILEKYLPMKLAENETYSMTLARLEQEDLA 903 Query: 830 EINHLMKQIIDS---------HFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEKIQS 876 + + +D F + + + + I SFL Sbjct: 904 GRMAEVGEWLDEYIAADSRLRAFRDAGIYSSVTRQVKRRLSRSLPAIWASFLSGAAGEHK 963 Query: 877 SIEKIFVNIPAKMAIESI----GIHLT----------GFADRI------DLLKSGFVDIT 916 ++ L G DRI DL +G I Sbjct: 964 IFRPTAYEWAFGLSEAGGSARPPYRLRLSTGDSVDLCGKIDRIDFAMNSDLQPTGEFRIV 1023 Query: 917 DYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI- 974 DYK+ + P ++ QL L AA A + Y LK K + Sbjct: 1024 DYKSNRSEPNIYHIYYGLEFQLPLYIAAYAAHLRRPTGEDFQDDAGYFSLKPKTDVPQTF 1083 Query: 975 -----------TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK--SNIQ 1021 + +L +K+ E+V L+ G + + Sbjct: 1084 SGLKKGLNKLQKEGFPVEAVSDLVKKAEFKAGELVEALRGGSFNPHPRVADYKDELPCRY 1143 Query: 1022 S 1022 Sbjct: 1144 C 1144 >gi|300779591|ref|ZP_07089447.1| probable helicase [Corynebacterium genitalium ATCC 33030] gi|300533701|gb|EFK54760.1| probable helicase [Corynebacterium genitalium ATCC 33030] Length = 1040 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 123/1029 (11%), Positives = 269/1029 (26%), Gaps = 81/1029 (7%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIK 79 A + L++ +S+ +K + +R E E + PI + Sbjct: 44 AGAGVTSFLIDVAAARIAAGQDPSSIVFVTASKESAARVREELSEKLTSSGFVADEPIAR 103 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 S+ + A + + + RL+ A R L D P Sbjct: 104 SVHSLAFALLRASE----DPAVAAATLIRLISGAEQDFAIRELLQGNAADGTGSWPEE-L 158 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 + A+ L D + L + W A DFL Sbjct: 159 RPALPMVGFARQLRDFLLRAVERTLTPGQLRDMGRTHGIPVWSAAGDFLAEYQDVMALYG 218 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 ++ L+ + T G + I + PA+ L++ + + L Sbjct: 219 ARSYSA------SELVAEVVRRPLPRTWGTVFIDDAQHLDPASGILVNQLIAEAD----L 268 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 + A++ + + + + D + Sbjct: 269 AVVGGDEEQAVFRFRGASPLFFKNLDAPTID--LGVSRRTPTARAVIAPDGAMNNAFVAD 326 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 R+ + +R+ ++E + + VA+ D E +A L Sbjct: 327 TLRRAHLEEGVPWRDMAVVVRSVGMIEPLRRTLLQAGVPVAINPTDLVLGEQRIVAAMLL 386 Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINI--DISAGIPLSTTLHSSILTSLLNAI 437 N + R + L + +L + Sbjct: 387 GLRALNGLDA-------THWRELLLGPVGGADPVTLRRLLRGLRRWRPEVRAEDTLSELL 439 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + ++ E + + + S D VL + Sbjct: 440 ALRGELPDFGAILT-------QRELDILDRIRGVL----EAGRTSLDDGGSVEEVLWAVW 488 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 Q + A +D ++ + + + I+ + Sbjct: 489 AQTGLAESLMAIALRGGAAGSQADRDLDAMMALFDAAGDFTERRPTATIEAFIAHIEEQE 548 Query: 558 V--TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-------CIKANAIEWIDI 608 + G+ + + ++ S + ID+ Sbjct: 549 LPTGVRDRRTAVPDAVPLLTAHGVAGREFARVIVSEVQELSWPTLSETGTLMRQEDLIDL 608 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + + ID T + + +I+ ++ + + F+ + Sbjct: 609 VDQGIDPATPVSHTVDRLKEERRLFHVAVTRATEQVIVTAVDAPDGDEVIEPSRFVQQFA 668 Query: 669 QSDLNLK------TAEKYIGQAAHDF----EMANGTRHLIY-TRSLRENNIPTIASRWLQ 717 + + TA + F G + +R + I + + Sbjct: 669 DARGTIPEHVSTGTAASGAAEQQTLFDGVDTSTTGREEVHVDVAPVRVLAVEDIVAELRR 728 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + ++ R L Q R P S S I+ Sbjct: 729 AITDESSSEDVKLQAARQLARLAEAGVPGADPGQWWGIREASISEGVEPPGRLSPSRIEG 788 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L+ P + D RGTL H + N ++ Sbjct: 789 LLECPMR-------NVLERDVAPASSDAMTRGTLAHYFFEAV------GNGADVELAQAD 835 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 ++++ +P ++ F ++ + E+ + + E + +P + + G+ Sbjct: 836 TLEAYRALFTVPSWKEVSDLGEFTRLLGRAAQWVEETRGTFELVDTEVPVDVEVAP-GLR 894 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + G DR++ +SG V I D KTG N P A++ +PQL AL G+ + Sbjct: 895 IGGRIDRLEREESGAVHIVDLKTGKNHPSAAEAEE--NPQLFAYQLALSRGALREGTDAS 952 Query: 957 VANLFY---IRLKQKFKIDCITNDKKKYSADELSEKSLK--NLIEIVTLLQNGEQPFISH 1011 VA + + I ++ K +A + + + + + L Sbjct: 953 VATAGETDSLDVGGGTLIYPGSDQVKVTAAHQAPKDAEQLEEFAARIATLPAEMTGPRLR 1012 Query: 1012 LRLSEKSNI 1020 + + Sbjct: 1013 AVTGKHCDF 1021 >gi|163839982|ref|YP_001624387.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953458|gb|ABY22973.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 1080 Score = 152 bits (383), Expect = 4e-34, Method: Composition-based stats. Identities = 113/968 (11%), Positives = 246/968 (25%), Gaps = 172/968 (17%) Query: 136 LSLPISPANAIWLAKNLADIIDII-----ETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 +P + L D + + + + L + Sbjct: 172 AEHLQNPRDVETWLAALRDEFEALPLNTGKGRGPAGKALELADRLDIRAH-------VAQ 224 Query: 191 ASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARL 245 + + + NA + E + +++ + A L Sbjct: 225 MVQQYQLAKSQRNALDYGDLVALAAKLALNVPEVAEQERLKHRVVLLDEFQDTSHAQLTL 284 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + G V D H + + + A L Sbjct: 285 FAALFGA--GHPVTAVGDPHQSIYGFRGASAGQLFRFPGIFRRADGQPAETAAL------ 336 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 N + + + + S+ + ++ L P +V L Sbjct: 337 ----TVAWRNSLSILESANAMSSELNRRAEQGHAESSTQLSPLQPRPGAPRGEVELSRFG 392 Query: 366 NEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 E EEA ++A + R S+ A++ R + ++ L I+ +I L Sbjct: 393 TENEEAQAVADRILARRSVRSQDVSVAILCRRRTQFQALQTALEAQNIDYEIVGLSGLLA 452 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 T + S L + A+ L+ + G + + + + + + + Sbjct: 453 TPEVIDVVSTLRVLVDPTRSDALMRLMTGARWRIGSKDLMALADWSKFLVASAKRARKAS 512 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + + +W + A L LQ + L Sbjct: 513 PTVIDDVAEAASLIEAIDALDADYW--------PDSARELSATGLQRLLALRDELRTLRR 564 Query: 544 TCGNLSISDWTKLTVTCL---QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 G+ +S +++ T L + + + +S F + E + Sbjct: 565 FVGDDLLSLISEVERTILLDIELAAKPGISYHRARHHLDAFQDAASSFLQSAERVDVLAF 624 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEG 652 A W+ G + P KS + +L ++ L +D + + GL Sbjct: 625 LA--WLSAADGEEGGLEMLPVEPKSGAVQLLTVHAAKGLEWDEVYVPGLATKSFPSDRAD 682 Query: 653 VWPKNTAKNPFLSRVMQSDL--------------------------NLKTAEKYIGQAAH 686 W P+ R ++DL + E+ + A+ Sbjct: 683 HWGTGNRALPWPLRGDRADLPEWKLQGEDQRTWIGELAEFTESVKDHALQEERRLAYVAY 742 Query: 687 DFEMAN-------------GTRHL--IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 + + + T + + AS L + Sbjct: 743 TRARSFLAVSTSKFAGTSVRAKEISPFLTELVDVAEQESAASYGLGFRHWPAEQHLPEEN 802 Query: 732 KKRGQCYLDW-------------------------TRKLDYTTKQPHYKRPKPFPPLEAQ 766 +R L + + + P + Sbjct: 803 PEREAVIRAQWPFDPLAGPYLKIGEKVVEPLGSRRAALLSAAQRVQAARPSELSLPELSA 862 Query: 767 PRTY------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 S S + +L +P AV A+ + P Sbjct: 863 RWGIEAKRLLEQRTVRKQVIDVELPTHISASTLVELRVNPAAVVAQIRRPVPRKPGL--- 919 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 +GT FH + + + E ++ ++ E L + + Sbjct: 920 --AARKGTAFHAWVESYFGRAGQLDLGEFPGAADDFVEDAYQLEQLRENFEASEWAAKQ- 976 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + +P + I G+ + G D + G ++ D+KTG Sbjct: 977 -----------------PSEIEVPIETKIA--GVVVRGRIDAVFQDADGGWELVDWKTGQ 1017 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 PK + QL+L I KV FY + + + + + + Sbjct: 1018 LPKGKELGD-RSVQLALYRLGWAR--LKGIAVEKVRAAFYY--AARNQTERVLDLAGEQE 1072 Query: 983 ADELSEKS 990 + + ++ Sbjct: 1073 LESIISQA 1080 >gi|254520363|ref|ZP_05132419.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA] gi|226914112|gb|EEH99313.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA] Length = 1145 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 112/943 (11%), Positives = 254/943 (26%), Gaps = 140/943 (14%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + ++ +I + E L + ++E LK+ + E L Sbjct: 120 GFSSIVSKVITEFKKYNISGEILSSKEDEINDEELKKKISDLKLIFNSFNEIL-HKRFID 178 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + I I T P ++ +A + D Sbjct: 179 SDDELTFLAKRLKD-CNIYDDAEIWIDEFTTFTPQQLEVIKVLAKKAKVVNITLCSDSLS 237 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + N+ +++ +I + L + + + Sbjct: 238 GGSDIDYTDIFDAIKNTENSIL---------RIMKEGNISYLEPIDLNKGQSYRFLNNED 288 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + T + + ++V + +A+N +E +A + + +N Sbjct: 289 LQHLERHFFTYPFK----------EYKGKANNVRIYKANNSYDEVEVVAKDILRMVRDNG 338 Query: 387 ---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 K A++ + + ++ + I I + ++ S L + Sbjct: 339 YRFKDIAVVCRNIDEYEKISTVIFNEYNIPFFIDKKREILNNPLVVVIISSLEILASNWS 398 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ +K L + + + S + I Sbjct: 399 YESVFKYLKSGLVNVERDYIDILENYILANGIKGYKWTKDLYDKENISEEENTIIEIMEE 458 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 P + + K ++ + + L +KT + W + + Sbjct: 459 IRSPLMKLHNRIKGKNKVRDFATNLYEFLNELNVFKT----------LEVWLEEFNSL-- 506 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + + + + + +++E + E+ I+ + + Sbjct: 507 ------GLQDKIKEYIQVPEMVIEILDQVVEVLGDEVLDIKEFTKILISGFEEREIGVIP 560 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLK 675 + I + L L G+N+GV P + +S + L Sbjct: 561 MSLDQVNIGDISRVKGREVKALYLIGVNDGVLPAANKEEGIISDRERELLRNIGIRLASD 620 Query: 676 TAEKYIGQAAHDFEMANGTRH-LIYTRSLRE-NNIPTIASRWLQRL----LVLGGTDFFD 729 T + + + L+ T + + S + RL + Sbjct: 621 TKIRAFEEQFIVYTALTIPSEYLMVTFPMADFEGKSLRPSIIIPRLKKVLPNVVEESEIY 680 Query: 730 NLKKR-----------------------------GQCYLDWT------------------ 742 N++ R Y Sbjct: 681 NIRDRRDKFNKITAPTPTFNELISALRMEFEKENVDEYWAQAFKWFENNEEFKNKSNRMF 740 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + L YT R K +++ + + S I++ P++ Y + LK Sbjct: 741 KGLTYTNLVEKIPREKIKRLYQSENKKLIFNVSRIEKYAQCPFSYYVQYGLKAKDRK--V 798 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ---IIDSHFEKENLPPH------ 851 + D G+ HN++ + N+ + ++ I++ +K Sbjct: 799 YEFSAPDLGSFMHNVLDDFTNTVRNEKIAWSDLNRERCKVIVNELVDKRLESDSNSILNS 858 Query: 852 --IDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH---------- 897 + F + + E+ + E + I Sbjct: 859 TKKYKYFADRFKRTITKSVMVISEQMRKGKFEVFKNEFAFGGFSDGEPIKIDLPSNETVY 918 Query: 898 LTGFADRIDLLK-SGFVDI--TDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQI 952 L G DRID L G I DYK+G + QL + A +K + Sbjct: 919 LVGRVDRIDTLDLDGNTYIKIVDYKSGAKKFNLTEVYYGLQIQLLVYLDALIKNSKYILQ 978 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + Y R+ D I KK+ + +E+ + LK L Sbjct: 979 KQAMPGAILYFRID-----DPIIKSKKQLTEEEIKDNILKELK 1016 >gi|189218844|ref|YP_001939485.1| Inactivated superfamily I helicase and RecB family exonuclease [Methylacidiphilum infernorum V4] gi|189185702|gb|ACD82887.1| Inactivated superfamily I helicase and RecB family exonuclease [Methylacidiphilum infernorum V4] Length = 923 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 80/603 (13%), Positives = 165/603 (27%), Gaps = 103/603 (17%) Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + + + + + + +L GI+ +GI T L + Sbjct: 282 ENYGEATTIGLCRSKVVSLLACKLRSSGIDFLNYSGISYKETPFYDFFLQLRELLQDP-S 340 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ + PL+ K + LDR+AT+ Sbjct: 341 WTKFSSWARSPLSYEWI-------------------GKKQKGKSEEFLSFLDRVATRSIA 381 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + + E+ L+ I TP W K + L Sbjct: 382 PSLSDFFESSQQSSFEVLGLIRSFIEDLRTP------------------QWPKRLLNFLA 423 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 V + + + + ++ ++ ++ E+ + Sbjct: 424 VVLEESSSFAGEMVEQWADFIGKRIDRFCSLASVNAFHGCSPFLSLMLDEMNEESFFFET 483 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 E L + G LE + L+L G E PK + L+ ++ + LKTAE+ + Sbjct: 484 EGDPKLELKGWLELLWDDSMHLVLAGFQERDVPKAIEPDFILTDEIRKKVGLKTAERRMA 543 Query: 683 QAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + G R ++ + + SR L R + Sbjct: 544 RDSLLLAFLVNRLSKGARLDVFLSKFDQQGELLLPSRLLFRQK--------------AER 589 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRI 790 L + +PK P + S S + ++ P+ Y + Sbjct: 590 LARRVDFLFRSLPSKTIPKPKTSPFKLKLPSVGWKSEESLSVSALNDYLSCPFYFYLKHR 649 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKEN 847 L + + + D G + H ++ + + + ++ ++ K Sbjct: 650 LGWQPVVLPQGELLEADFGKVLHEVLAVFGENFKGVELEDPSLIFSFLEDQLEKVLTKSY 709 Query: 848 LPPHIDIIW------RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + + + + V ++ IE + + G Sbjct: 710 GKDRTLGLQFQQKAMWARLKSFASFQAQW---SREGWRIWAVEKKFELEIE--NVKVRGR 764 Query: 902 ADRIDLLKSGFVDITDYKT-----------GDNPKKET-------------AQKLIDPQL 937 DRID K I DYKT G E + ++ QL Sbjct: 765 IDRIDK-KDEQFLIIDYKTTEPREPFGSHLGMPRSTEQWPPAEAYFSFQGKKWRWLNFQL 823 Query: 938 SLE 940 L Sbjct: 824 PLY 826 Score = 69.6 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 84/273 (30%), Gaps = 33/273 (12%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 PF + L+ R + + VPT + + L +I+ K+ Sbjct: 10 WQDPFPLLVAQWLIANCGRNWERCP-----DFSDCLVLVPTALSGKMLIEAL-KISLKRG 63 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 + P+ + + E + + ++R L W N L ++ Sbjct: 64 FVPPLTLTPMALFEVH----PDSWLDFRKVPTRLERKLL-------WVNVLHRAFQNRLL 112 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 N + LA L D + +E +DL ++ L++ Sbjct: 113 GPWALEGEDFENLLSLAGVLVRAQDELAEKEMTLKDLASI-------HEEELFKNLQLLE 165 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + E L + P+ + +L++ E + +I+AG P + + + Sbjct: 166 SIYFETLEKWGFLDPLSHLRSLLQ---EPKLPPGIKRLIVAGCLDPHPLAVKFLEGLKEL 222 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 P ++LPG W + + Sbjct: 223 PAIEVLLPG------EKSWAGLFDAQGLPVEER 249 >gi|225861092|ref|YP_002742601.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298502848|ref|YP_003724788.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae TCH8431/19A] gi|225727786|gb|ACO23637.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298238443|gb|ADI69574.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae TCH8431/19A] Length = 1099 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747 + +G + L + + L Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 723 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|118587591|ref|ZP_01545015.1| ATP-dependent deoxyribonuclease, B subunit [Oenococcus oeni ATCC BAA-1163] gi|118432042|gb|EAV38784.1| ATP-dependent deoxyribonuclease, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 1161 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 120/1010 (11%), Positives = 289/1010 (28%), Gaps = 160/1010 (15%) Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + P LS+ A N+A+ + I ++ L Sbjct: 101 LVGQVLRELPIEKLSIFARSARMPGFVANVAEQLLEIWRSGLTATEILPLHQLDDR--LS 158 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L + L + + A +E + G +G + Sbjct: 159 EKIKVLALIETKILPSLKDYSLPDDALRNFATKISEIDLKNCNFY----FEGFSGFTASE 214 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L+ + + A + + + + E+ + + P Sbjct: 215 LSLVKALISADRKAQLGNN-----SEIVLSLLGEQQNDRYGEGNLFYK-PNQLFKNEFSS 268 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 ++ R + S + RS ++ + ++ F ++ Sbjct: 269 ARVQIVSNTRSLSESQLNFERS----------------WRELETQGFTSRKRSFPQTQIV 312 Query: 363 EADNEREEAISIAIALRMSLDENKKKSA-----LITADRNLARRVKLELTRFGINIDISA 417 + ++ E +A ++R L ++ K A L + R+ + + Sbjct: 313 VSSDQEHEIDFVARSIRQRLLDSPKLRAKDILILAQRLGGYKNIIPKIFDRYDLPYFLDK 372 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 +S +S++ +LL + I + + L + + + + + Sbjct: 373 DTRMSDHPLASLIENLLG-SSNEFAYDRIMKIFRTGLLSWQLKDDFQTTLDYLENYLLAN 431 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VT 536 K + L+ Q ++ + ++ + L + I++ + Sbjct: 432 NPKEKVWRQEEFQLI------QISDEQDLNDDQKIDRQINALINRMRLFIIKVLDDFQEK 485 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + +N ++ +W + L + K S +++ + Sbjct: 486 FAKVENYHQAVKTLYNWLTDQQIDQVLLDQANVGDDRGL---QTWKLFLSTLNEVDQLIG 542 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 K + +++ I+ + + + + + +F L ++ P Sbjct: 543 DKKYSQKDFLQILKDGFAAASFAGIPASLDQITVSESGIVQRNDFKVLYFIDASDASLPA 602 Query: 657 NTAKNPFLSRVMQSDL--------------NLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 T + + + L + E + + T + ++ S Sbjct: 603 QTNSSSLIDDFDRLQLIDDFSKAQKAYYLQDTSRQEMTAENFRFYSSVLSATDSVTFSYS 662 Query: 703 L-RENNIPTIASRWLQRLL----VLGGTDFFDNLKKRGQCYLDW-------TRKLDYTTK 750 R + S +L+RL +L + +D+ L T + Sbjct: 663 KLRLDGKQNELSPYLRRLALKNVSDLEIKKIPDLPRSQADLVDYLGTANSSAAILSQTAQ 722 Query: 751 --------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 QP RP+ L + S S+I++ Sbjct: 723 NFGEDFIDGLSDLLIKRNPYFQKILQALHYTNQPVTLRPELINKLFGEDLRLSISQIEKY 782 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 ++PY + + L+L F D GT +H+I ++I + I+K T + Sbjct: 783 YSNPYEYFLQYGLRLKKRNQF--TVDAALSGTYYHSIFEQVINRLIDKRTD-----FHDL 835 Query: 839 IDSHFEKENLPPHIDIIWRHLFH---------KISHSF---------LEHEEKIQSSIEK 880 D E + D+I F ++ S L H+ ++ Sbjct: 836 SDQELENLSQKSAHDLIELPDFQILQSDDHFRAVAQSLTNDVLLTLKLMHKANRLNNSHP 895 Query: 881 IFVNIPA---------KMAIESIGIH--------LTGFADRIDLLKSGFVD--ITDYKT- 920 I + + ++ + L G DRID + I DYK+ Sbjct: 896 IKTEVVFGKLSTDQQQEQSLSGLDFTLANGRKIYLRGKVDRIDQQDLEHIFGTIIDYKSN 955 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 G A + QL AL S S++ + +++++ K + Sbjct: 956 GKVFDFRDAYVGTELQLLTYWLALSKNS-SRVGINQPGGAVFVQIRNKPVDISQALAHQI 1014 Query: 981 YSADELSEKSLK-----NLIEIVTLLQNGEQPFISHL---RLSEKSNIQS 1022 + +++ + ++ +Q ++++L +K+ + Sbjct: 1015 QLDQLIGDRAEQQIPDFQFHGLLLD----DQNYLANLQTISAGQKAKYYN 1060 >gi|225858939|ref|YP_002740449.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 70585] gi|225721378|gb|ACO17232.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 70585] Length = 1091 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|183603483|ref|ZP_02717219.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC3059-06] gi|183576516|gb|EDT97044.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC3059-06] Length = 1099 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + GA ++ G Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERKNLNQT 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|301794253|emb|CBW36674.1| putative ATP-dependent exonuclease subunit B [Streptococcus pneumoniae INV104] gi|332203006|gb|EGJ17074.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA47901] Length = 1091 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|239917998|ref|YP_002957556.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|281415826|ref|ZP_06247568.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|239839205|gb|ACS31002.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] Length = 1145 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 118/1021 (11%), Positives = 243/1021 (23%), Gaps = 121/1021 (11%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82 + L+P L + P++ A LR G+ + + +++ Sbjct: 66 VAVEYAARRIEAGLDPESL---LLLAPSRDAAARLRDALTRRLAAAGRGTRAVTPVRTWS 122 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPIS 141 + + RLL A + L L Sbjct: 123 SYAFDLLRR--ARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPDWPDDVAP 180 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 A + + +++D + + L L W AA L+ + E Sbjct: 181 AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPEWEAAAVLLQDYRDRIDLGMAE 240 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 A G A +R E + + ++ V + + Sbjct: 241 --AFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERDRLAVL-VVEDLHEATPAVHD 297 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 L + +T +LD + + + Sbjct: 298 LLSVLGRGRDVLLTASPDTTVEGFRGARPDLLARYPGVLDPDPVPGAAPPASPDGRVRVL 357 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPN------IQKCFSDVALIEADNEREEAISIA 375 R + R + V E + Sbjct: 358 TRGHRMRAEVQDAYLRVARRVRQRTAGVERTRTETVPADGDGAVRAHVVPTRAHEDQLVL 417 Query: 376 IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILT 431 + E+ + ++ + + L G+ + AG+ L + L Sbjct: 418 ERVLRVHHEDGVPLDRILVVARSGSRVAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLL 477 Query: 432 SLLNAI-----------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 +LL+A + D + L+ ++G R L A RG Sbjct: 478 TLLDAAGALAEDPEARVENVFDPDEVVGLLTG---RYGMASALHVRRLRQDLLAAERGRG 534 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L + L + R+ ++ T L + Sbjct: 535 GRRTSDALLAAALLDPSLAGPEHERHRALRRVHWMLRDGLEAARAPSASPETVLWALWSA 594 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 S++ + + K + A Sbjct: 595 SGRAERWRSLALRPAEHANDRRESRRADADLDA---VVALFKVAERFVDQFPGASPESFA 651 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +E D+ + + E + + + +DT+I+ GL EGVWP + Sbjct: 652 VYMESQDLPVDTLA-----RRAESGDAVHVRTPAAAAGQEWDTVIVVGLQEGVWPNTRLR 706 Query: 661 NPFLSRVMQSDLNLKTAE--------------KYIGQAAHDFEMANGTRHLIYTRSLREN 706 L DL A+ + ++ R ++ T + Sbjct: 707 GQLLGATDLVDLVTLPADAPWPTDHRTRLREVRQDELRMLAAAVSRARRQVVATAVRSPD 766 Query: 707 NIPT----------------IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 P+ + ++RL V+ L R + L+ + D Sbjct: 767 EGPSDFLDLVDPPERLPAEARDAAGVRRLTVVPDPITAPALVGRLRRVLEAGDETDAADG 826 Query: 751 Q----------------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 E + S S ++ + +P Sbjct: 827 ATPRAAAAGLAVLAADGVGVADPRRWWGLLPLSTEAALVDPEREVVALSPSRVETALRNP 886 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 + GTL H++ + E+ + ++ Sbjct: 887 LDWVLYHV------GANAGGTLAQSVGTLVHSVAEHHPEGVPEDVRAELERRLPELG--- 937 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPA--KMAIESIGIHLT 899 I I + +++ + + + + + +T Sbjct: 938 ----LPEGWITEIEHDRARGLVDAYIGYWSIARAAGRRPVAQEVRLLADLTWGGTTVRIT 993 Query: 900 GFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G DR++ G I D KTG P + PQL+ A++AG + Sbjct: 994 GVVDRLEADAQGRPFIADLKTGRSAPTGAEMAR--QPQLAAYQVAVRAGGLEPVRDDPAT 1051 Query: 959 N 959 + Sbjct: 1052 D 1052 >gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 1115 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 116/1039 (11%), Positives = 259/1039 (24%), Gaps = 152/1039 (14%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83 + +V ++P V T++A Q+L + + + + +L + GD Sbjct: 48 MAARVVWLVANGVVDPEA---VLGLTFTRKAAQQLTARIRKRLARLAGSDLLRRVDPSGD 104 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + + L + L P+ LL L + + DL Sbjct: 105 LRSRILAGEPEVSTYHSYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDL- 163 Query: 132 PESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 ++ + + L+ LA+ + D + + + L + L Sbjct: 164 -DTDRNPASVTEAVLALSGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELL 222 Query: 189 KIA------------SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPII 231 I + + L A R A+H + ++ Sbjct: 223 DILDTQHRRVELLPLVQRLADTLRREGALDFGSQMSLAARVAADHPEVGLAERTRFRVVL 282 Query: 232 IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + + L+S++ + D W + + +++ + Sbjct: 283 LDEYQDTGHSQRVLLSSLFGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 342 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E + S + R + +S Sbjct: 343 NGDPAPTLELLTSWRNPPEALALANMASASLRERGVSVSTLR------------------ 384 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLARRVK 403 Q DV L + +E +A + E+ +A++ A + Sbjct: 385 ARPQAVPGDVRLALTGDVVQEREWVADRIAEQYADATSRGEDPPTAAVLIRRNADAAPIA 444 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L G+ +++ L T + + ++L + A ++ A++ Sbjct: 445 EVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVADPMAGSAAVRMLTG--ARWQIGAAD 502 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L+ +A+ + + S + D + H + D A Sbjct: 503 LTALSRRASELAIGTGYGTTGAVTDSSALADAVGQALPGEHAEQAGLADALADPGPAERY 562 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 IT + + G +++ L + R + + Sbjct: 563 SQVGYARITAVAAELASLRERIG-QPLTELVAEVERALGIGIEAQARTRRSARGSAGREH 621 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLN 640 L + + S A + ++ G + +L ++ L Sbjct: 622 LDAFADVVAGYASRTSATVTGLLAFLSAGESVEKGLAPGEVEVDPHRVQVLTVHSAKGLE 681 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSR---------------------------------- 666 ++ + + L GV+P TA +L Sbjct: 682 WEVVAVPHLTAGVFPSRTASGSWLGAVGELPPSLRGDRARPGESADGVPVLELENLYDRK 741 Query: 667 ---VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRL 719 A + + + F +A + S P S +L L Sbjct: 742 DLEEAVKAHKAALAARKLDEDRRLFYVALTRTERVLFASGHHWAESGTEPKGPSEFLTEL 801 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + + + + D + +P R S L+ Sbjct: 802 RDTVTDEEHEGI--GIVDIWAPAPEPDEQNPLTSTPKSAVWPRDPLGLRRESVERGAALV 859 Query: 780 ----------------NDPYAVYARRILKLDFIPH-------------------FKKDPD 804 +DP A L + + D Sbjct: 860 VAALKRAGAPTPAGEDDDPENWAADVDALLAEREARANARTEVVLPGQLSVSQLVELEAD 919 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 + + T + ++ + + P ++ Sbjct: 920 PDALAARLRRPLPFPPNPLARRGTAFHAWVERRFGATRLLDLDELPGAADTDAGPDTDLA 979 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 + V +P + ++ L G D + G + D+KTG P Sbjct: 980 TLQDAFLRSSWADRNPTEVEVPFETSVAGT--VLRGRIDAVFTDPDGGWTVIDWKTGAEP 1037 Query: 925 KKETAQKLIDPQLSLEAAA 943 +K + QL+ A Sbjct: 1038 SAAN-EKAVVMQLAAYRLA 1055 >gi|295396965|ref|ZP_06807087.1| possible ATP-dependent deoxyribonuclease, subunit B [Aerococcus viridans ATCC 11563] gi|294974818|gb|EFG50523.1| possible ATP-dependent deoxyribonuclease, subunit B [Aerococcus viridans ATCC 11563] Length = 1242 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 113/1011 (11%), Positives = 251/1011 (24%), Gaps = 176/1011 (17%) Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWE-DLHALKNEKYGMW-----WLLAADF 187 L + + I + LAD+ + + + L++L + + + Sbjct: 117 DDLLVYRGEYDQIGFVEALADLFKELVNGQITSDVFLNSLSSYESSDQPLVQNQVKKMKE 176 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L + + L L + + + +K III G + Sbjct: 177 LAAIYGEYEKYLAGLTMADQ---NVFAQLRQVISDQDLSKTRIIITGFDYFNAQELETIV 233 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + ++ LD T T + +L+ F+ Sbjct: 234 AFLENCPQVQIVLNLDQPYD------------FRTPDWYELFTVTGKTYNQLMQFVR--- 278 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI----E 363 + + + + + + F D + I ++ + V + E Sbjct: 279 --KQEIPFANPIVAESNNSYADGFKVLDHYLRTDNRIESGQVAQTDPAKTAVNQVMEIWE 336 Query: 364 ADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVK-LELTRFGINIDISA 417 + EA +A + + D K +++ D + + L I + Sbjct: 337 VPSTHMEADQVANEIYRLVSDPNTDYRYKDIQILSRDEDTYQHALQAALDANEIPYFANF 396 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF------------------ 459 ++ ++ SL + + L++ L Sbjct: 397 QEDMALHPLYRLMMSLYRVYQGNWRYQDVFDLLRSELLTPVDLDVLADWNGPTFDSVGAV 456 Query: 460 ---------PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + A + E V LR + + + Sbjct: 457 SDELSASKKGQIQFRDAIDLTENVVLRNGYEGQFWWSKDRIWSYILVGEDGEKIGTKRDI 516 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQNVCLD 567 + ++ +V + +T + + + + Sbjct: 517 AIEATANQVKAFVVGALSPLFDNWKKDQTTEAAITYFYQFLTNNGIPTNLMNWRDSYLEA 576 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + E+ +T + + + + I+ + Sbjct: 577 GQLQEARQ-HEQAWQTFIHMLDDYVLLFGEEAFDLEYFFKILDLAFQNASYATVPPTMDA 635 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------------DLNLK 675 + I E+++ L G+++ P + L+ + + Sbjct: 636 VTIGSFDENKVDAKKITFLLGMSKYALPVVYEEKSLLTNEDRQLVVSQLDDLQALKQSAD 695 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI-ASRWLQR-----------LLVLG 723 + A+ + T HL + L + T S + R L Sbjct: 696 SKNNNEAYKAY-LAFLSATDHLYISYPLNNGDADTEGLSPMIGRIAEAFDIQTKYLRQPS 754 Query: 724 GTDFFDNLK----------------KRGQCYLDWTRKLDYTTK----------------- 750 L + ++ Sbjct: 755 DHAAEKTLLKLGNGHTQVRYLLKAMAQDAHGQQRLSQIWRPVYDQVVSNQSVAGFFKWLQ 814 Query: 751 -------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 P+ L S S+++ DP++ Y + LKL P F+ Sbjct: 815 SSLTYHNTVLPLTPELSRSLYGDILAVSVSQLELYNRDPFSYYLKYGLKLKERPSFQ--L 872 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPP---------- 850 D G FH ++ K+ K+ + +K I+ +K N P Sbjct: 873 DSLQTGNYFHEMLDHFFKEVNQKDFDLANLSDGEVKGILGEVTDKLNDPDVYPEYTIFKV 932 Query: 851 -HIDIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMA---------------IE 892 H + + + +E+ K + ++E I Sbjct: 933 NHRNSYLQESMKETIQLLIENIIKQRQAVNVETIETEQRFGYTQNEDEEEETITHFTLAN 992 Query: 893 SIGIHLTGFADRIDL-------LKSGFVDITDYKTGDNPKK-ETAQKLIDPQLSLEAAAL 944 + L G DRID LK F+ + DYK+ + K + QL Sbjct: 993 GQEVRLRGKIDRIDAVSQVESGLKQNFIQVVDYKSSAHDVKFDQIYVGSQLQLYTYLKVA 1052 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 FY R+ F+ + + ++++ L +L Sbjct: 1053 LDQLNQDGQTALPLGAFYQRI---FQPQVKIKKQTDLTDKNIADQILADLK 1100 >gi|149025504|ref|ZP_01836437.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP23-BS72] gi|147929376|gb|EDK80373.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP23-BS72] Length = 1091 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 121/931 (12%), Positives = 247/931 (26%), Gaps = 145/931 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKISSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLTNLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 +S + + E +L IL + L + K + Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWNVFLKEG 476 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 VT + E K + + + + + +++ ++ + Sbjct: 477 VVTKQLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLS 536 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + T+ + L D + GL + PK L+ + ++N T Sbjct: 537 QYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQAT 596 Query: 677 AEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-- 723 E A + + M + + L+ + N + S +LQ L+ LG Sbjct: 597 EEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAYLQELVHLGFS 656 Query: 724 --------------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTT 749 G L +KLD Sbjct: 657 RKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQG 716 Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + P Q S S + + + Y+ + R +L L Sbjct: 717 LENPALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQ--EE 774 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856 + PD G H I ++ + Q + FE Sbjct: 775 LRLRPDARSHGNFLHRIFERALQLPDEDSFDNRLEQAIQETSQEREFEAIYQESLEAQFT 834 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL- 908 + + ++ + H + IE I + ++ + + G DRID L Sbjct: 835 KEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRLK 893 Query: 909 KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 G + + DYK+ Q ++ QL AALK Y+ Sbjct: 894 ADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMYL 944 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + L Sbjct: 945 EMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|183603905|ref|ZP_02722998.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|183603908|ref|ZP_02723035.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|183603909|ref|ZP_02723046.2| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|307067687|ref|YP_003876653.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae AP200] gi|183577185|gb|EDT97713.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|183577192|gb|EDT97720.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|183577243|gb|EDT97771.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae MLV-016] gi|306409224|gb|ADM84651.1| ATP-dependent nuclease, subunit B [Streptococcus pneumoniae AP200] Length = 1099 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 425 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 723 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4] gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4] Length = 1120 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 117/1039 (11%), Positives = 259/1039 (24%), Gaps = 152/1039 (14%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGD 83 + +V ++P V T++A Q+L + + + S +L + GD Sbjct: 48 MAARVVWLVANGVVDPEA---VLGLTFTRKAAQQLTTRIRKRLARLAGSELLRRVDPSGD 104 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + + L + L P+ LL L + + DL Sbjct: 105 LRSRILAGEPEVSTYHSYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDL- 163 Query: 132 PESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 ++ + + LA LA+ + D + + + L D L Sbjct: 164 -DTDRNPASVTEAVLALAGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKDLL 222 Query: 189 KIA------------SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPII 231 I + T+ L A R A+H + ++ Sbjct: 223 DILDTQHRRVELLPLVQRLTDTLRREGALDFGSQMSLAARVAADHPEVGVAERTRFRVVL 282 Query: 232 IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + A L+S++ + D W + + +++ + Sbjct: 283 LDEYQDTGHAQRVLLSSLFGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPMA 342 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E + S + R + +S Sbjct: 343 NGDPAPTLELLTSWRNPPEALALANVASASLRERGVAVSMLR------------------ 384 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLARRVK 403 Q DV L + +E +A + E+ +A++ A + Sbjct: 385 ARPQAVPGDVRLALTADVVQEREWVADRIAEQYADAASRGEDPPTAAVLIRRNADAAPIA 444 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L G+ +++ L T + + ++L + A ++ A++ Sbjct: 445 EVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVADPMAGSAAVRMLTG--ARWQIGAAD 502 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L+ +A+ + + + + D + H + D A Sbjct: 503 LTALSRRASELAIGTGYGTTGAVTDSAALADAVGEALPGEHAEQAGLADALADPGPAERY 562 Query: 524 VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 IT + + G + + + + E Sbjct: 563 SQVGYARITAVAAELASLRERIGQPLTELVAEVERVLGIGIEAQARTRQSARGSAGREHL 622 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + + S + ++ + G + +L ++ L + Sbjct: 623 DAFADVVAGYANRTSATVTGLLAFLSAAESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEW 682 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSR----------------------------------- 666 + + + L GV+P TA +L Sbjct: 683 EVVAVSHLTAGVFPSRTASGSWLGAVGELPPSLRGDRARPGESADGVPVLELENLYDRKD 742 Query: 667 --VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRL- 719 A + + + F +A + S P S +L L Sbjct: 743 LEEAVKAHKSALAARRLDEDRRLFYVALTRTERVLFASGHHWAESGTEPKGPSEFLTELR 802 Query: 720 --------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + + K D ++ Sbjct: 803 DTVTGEEHEGIGVVDLWAPAPEPEEQNPLTSTPKSAVWPRDPLGLRREAVERGAALVVAA 862 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH------------FKKDPDRTD 807 Q + + D A+ A R + + + + D Sbjct: 863 LRNAGKQSPAGEDEDPENWAADVDALLAEREARANARAEVVLPGQLSVSQLVELEADPDA 922 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHKIS 864 + + T + ++ + + P + Sbjct: 923 LAARLRRPLPFPPNPLARRGTAFHAWVERRFGATRLLDLDELPGAADTGAGPDADLATLQ 982 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 +FL ++ V +P + ++ L G D + G + D+KTG P Sbjct: 983 DAFLRSPWADRN---PTEVEVPFETSVAGT--VLRGRIDAVFTDPDGGWTVIDWKTGAEP 1037 Query: 925 KKETAQKLIDPQLSLEAAA 943 +K + QL+ A Sbjct: 1038 SAAN-EKAVVMQLAAYRLA 1055 >gi|311108182|ref|YP_003981035.1| hypothetical protein AXYL_05013 [Achromobacter xylosoxidans A8] gi|310762871|gb|ADP18320.1| hypothetical protein AXYL_05013 [Achromobacter xylosoxidans A8] Length = 887 Score = 151 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 65/555 (11%), Positives = 161/555 (29%), Gaps = 41/555 (7%) Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 R + + + + L+ + + Sbjct: 336 DVRDRARLASIDARWRRQAQLHVSPQDWRKLLADLPLLAQAWNQAMEIWTQGGRQATCDV 395 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W L + L ++ ++ G +L S + + + ++++ + Sbjct: 396 WMLRMKAALMALGFPGEGVLDSVGYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLESV 455 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + +P+ + + L +LG LE+ +D + + GL + V P + NP L + Sbjct: 456 ARSASFQPQRDPLARLDVLGLLEAEGGYWDGVWMLGLTDDVLPASPKPNPLLPLAVLRQA 515 Query: 673 NLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 T E+ A + +I + + + S + + D Sbjct: 516 KAPRATPEREREWAEGMYAALCRCAPEIIVSHAHMDGERELRPSPLI------AAAELTD 569 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 Q ++ + P + +P + R Sbjct: 570 WAPAATQALSALPQESLDDAQGPPLA--------AGNRGGGGLDVLDTQARNPLWAFVRH 621 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSH 842 L + + RG H + + +++ + L++Q + Sbjct: 622 RLGGREMAPYADAATVNVRGQFLHKALELVWGMMPDQDALHEVMATGRLPALLEQAVAQA 681 Query: 843 FEKE--NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++E + P + + + S+L+ E + V + ++ + L Sbjct: 682 ADEELKDYAPALKTLECQRAQAVLTSWLDMEAQRLP-FAVAQVEKNHQWQRGALNLKL-- 738 Query: 901 FADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID L G I DYKTG + + ++ QL A+ L + ++ Sbjct: 739 RLDRIDTLGDGRNVIVDYKTGVAAAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLV 798 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPF 1008 +A + ++ + D A + + + + L + + + Sbjct: 799 LAQIHARQVAAQGLADEDLGVPGVTLASDSKYFDGLSWPEIRQRWRTAIEALADEYAEGY 858 Query: 1009 ISHLRLSEKSNIQSE 1023 +++ + Sbjct: 859 AANVAYRRDDLKYCD 873 Score = 40.3 bits (92), Expect = 1.9, Method: Composition-based stats. Identities = 90/894 (10%), Positives = 211/894 (23%), Gaps = 108/894 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 A + R + L E ++ + LP I L + + + + P Sbjct: 22 ADTLVLTVNNRLSRRLTLELAGLLRQERQVSELPRILPLSAWLADAANELAFETDDDVPA 81 Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 + + L I E + + + A L+ + ++D + Sbjct: 82 YRLDSFATQLVWTEAIR--------------AEEAERVLLDASQAARLSMDADLLMDEWQ 127 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + D + W + + L ++A ++RA + Sbjct: 128 LQVPSGADT---DEYRGFAKWRA----------RYRQALAGIDAEDANQGYARVLRALED 174 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 +++AG T P RL+S A ++ Sbjct: 175 G-RLPIPQQLVLAGFTDISPRFRRLLSAFEEQGAAVAQWRDAQRVETAARRYEAADQGAE 233 Query: 281 ITSSNTTYS----THPQYSLAKLLDFLDI-KREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ + HP A + L+ + L G + + Sbjct: 234 WRAAAAWAAEHLKAHPHGRYAIVSPQLEAESPFARRVLSQALAGRGGEAAYAFNVAVGRP 293 Query: 336 TSDMRNTDILENKIPNIQKCFSD----VALIEAD-----------NEREEAISIAIALRM 380 ++ + + +C V ++ A + A A R Sbjct: 294 LNEWPMARAALAWLRALAECAPGKGCSVEVLGAALLGGHCAGDVRDRARLASIDARWRRQ 353 Query: 381 S--LDENKKKSALITADRNLARRVKLELTRFGINIDISA------------------GIP 420 + + L+ LA+ + + + G Sbjct: 354 AQLHVSPQDWRKLLADLPLLAQAWNQAMEIWTQGGRQATCDVWMLRMKAALMALGFPGEG 413 Query: 421 LSTTLHSSILTSLLNAI---------FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + ++ ++ +L +A+ +A L++ F + A+ + Sbjct: 414 VLDSVGYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLESVARSASFQPQRDPLARLDV 473 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + + L A+ K N +P R ++ + + Sbjct: 474 LGLLEAEGGYWDGVWMLGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREWAEGMY 533 Query: 532 TPLVTYKTN----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 L G + + L + + L L E Sbjct: 534 AALCRCAPEIIVSHAHMDGERELRPSPLIAAAELTDWAPAATQALSALPQESLDDAQGPP 593 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + G + + + + + ++ + + L L+ G Sbjct: 594 LAAGNRGGGGLDVLDTQARNPLWAFVRHRLGGREMAPYADAATVNVRGQFLHKALELVWG 653 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + + L +++ + E+ A + + T L Sbjct: 654 MMPDQDALHEVMATGRLPALLEQAVAQAADEELKDYAPALKTLECQRAQAVLTSWLDMEA 713 Query: 708 I--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 P ++ + G R D + +P+P Sbjct: 714 QRLPFAVAQVEKNHQWQRGALNLKLRLDRIDTLGDGRNVIVDYKTGVAAAKPEPDWSRS- 772 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + +N YA G + I + + Sbjct: 773 -----------RPVNVQLPFYAS---------VLADAAGGEVAGLVLAQIHARQVAAQGL 812 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + + DS + P I WR ++ + E + Sbjct: 813 ADEDLGVPGVTLASDSKYFDGLSWPEIRQRWRTAIEALADEYAEGYAANVAYRR 866 >gi|148989179|ref|ZP_01820569.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP6-BS73] gi|147925402|gb|EDK76480.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP6-BS73] Length = 1091 Score = 151 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 255/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + GA ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIVPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|15128574|dbj|BAB62753.1| putative ATP-dependent exonuclease subunit B [Streptococcus criceti] Length = 1115 Score = 151 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 135/1004 (13%), Positives = 281/1004 (27%), Gaps = 183/1004 (18%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + E L + S I + L D+ ++ DL L ++ L L Sbjct: 97 FEEGDLKIYGSLRKDINFIQQLVDLYKELQRSNLTIFDLDELASD-------LKYQDLTA 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMSTV 249 + + L E N + L + L + K +I+ G + L+S + Sbjct: 150 IFSAFYQVLEEENFEAQTKIAQFLEHVSSGELDQVLKNLVVIVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G ++ G S+ Q ++ LLD Sbjct: 210 HE--KGVDIIIGTYASQKAY-------------KSSFLGGNLYQANVEFLLDLGQKFGLQ 254 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + +G+ S + + L + + ++ + K + + + +++E Sbjct: 255 AEYIGHSSGDN--------LAHLSDYLEARHDFSVDLPRLTDQDK--QALTIWDVVSQKE 304 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A +R L++ K ++ D + ++ I P+S Sbjct: 305 EVEQVAREIRHLLNDGVRYKDILVLLGDPESYQLQIGKIFKKYDIPFYFGKAEPMSHHPL 364 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 ++ + SL + L+K L K ++ DI Sbjct: 365 ANFIESLERIKRYNFRAEDVLNLLKSGLFKDFKD----------TDIDKFDQYLKYADIK 414 Query: 487 DLKSL--VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 Q + + + +L++ + + + + Sbjct: 415 GQAQFKKAFTANVQQGFDDDGQALYKYDLDALNQTRRVLLEPL---LELFSSRALLGENL 471 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + + + EE KTL+ L +++ K + Sbjct: 472 LNKKFLPFLQAIDLPANMAKLAHGKSEQELEKEEEVWKTLTDLLAEMAAIFGQEKLKIDD 531 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ ++ + + + + + + GL G +P+ + + Sbjct: 532 FLALLQAGMQASSYRTVPATLDVVTVKDYELIEPHTSPYVFALGLTAGNFPRIHKNSSLI 591 Query: 665 SRVMQSDLN--LKTAEKY------------IGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + + LN L +E+ +A + + T+ L+ + N Sbjct: 592 TDEDRLALNDRLAASERQGHFDLPNQENIKKNHSAMISLLNSATQKLVLSAPQIFNENED 651 Query: 711 IASRWLQRLLVLGGTDFFDNL--------------------------------KKRGQCY 738 S +LQ LL +G + K + + Sbjct: 652 KFSPYLQDLLDMGVPLISKSAVSFEEDTDLGTYKALLSRVIEANQLSQTEDLSKDQATFW 711 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPP---------------LEAQPRTYSFSEIKQLINDPY 783 R+L Q P QP S S + N+ Y Sbjct: 712 SVMVRRLRQKLAQQDIAIPTITDDLTVEPISQEVLDILYPSDQPLRLSASSLTTFYNNQY 771 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A + +L+L+ PD G H I ++ + + + + + L+ Q+I+ Sbjct: 772 AYFLNHVLRLEEEESIH--PDFRHHGVYLHKIFERVMAQ--TEGSEDFDALLNQVINQVS 827 Query: 844 EKENLP-----PHIDIIWRHLFHKISHSFL-------------EHEEKI---QSSIEKI- 881 ++E + + + I+HS E + +K Sbjct: 828 QEETYRILYETDQEGRLTQDILLDIAHSTAPILRDNSAVQVLGRAEAQHYLGDKDWQKTP 887 Query: 882 ----FVNIPAKMAIES----IGIHLTGFADRIDLL-KSGFVDITDYKTG-DNPKKETAQK 931 + + + + + G DR+D L S + I DYK+G Sbjct: 888 QALKALEVNFNYQLPITAHQRQLEIRGQIDRLDQLSSSDSLGIVDYKSGDKKFNLADFYN 947 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + PQL ALK S + Y+ + D K + D+ Sbjct: 948 GLTPQLLTYILALKEQMPSDYQA-PIFGATYLHM-----QDPEIRFKDLKNLDD------ 995 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD-----HLARV 1030 + L++ Q YD HLAR Sbjct: 996 ------------------AAGVLAKTFKYQGLYDAQQASHLARY 1021 >gi|212551066|ref|YP_002309383.1| hypothetical protein CFPG_709 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549304|dbj|BAG83972.1| conserved hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 946 Score = 151 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 79/438 (18%), Positives = 148/438 (33%), Gaps = 39/438 (8%) Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + ++ + + V L I+G LE+R L+F+ LI+ +NEG P + +N F+ Sbjct: 493 FSWLLRKYLSETKVPFNGNPVKGLQIMGVLETRTLDFNNLIIFNVNEGYMPGHRNENTFI 552 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRL--- 719 + ++ + T E A+ F +++ + E SR+L +L Sbjct: 553 PQFLRKHFRMYTVEHQDSIYAYYFYRLITRAQNITLVYTTNETQIGKAEMSRFLLQLLVD 612 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L L+ +D + K Q ++ S + + I Sbjct: 613 PRLKDNIERFTLQASVIPMHSRHITIDKDKSLLEKIKNKYDLNTNIQAKSLSPTILSCFI 672 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP--------EI 831 + PY Y I +L + D + G++FH L ++ + + Sbjct: 673 SCPYHFYLEYIQELRNKTELSSETDNSIFGSIFHQAAKLLYQQIGTRQIDSKTLDMYTQS 732 Query: 832 NHLMKQIIDSHFE--------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 ++ I F+ KE +I H+ K+ + ++K + + Sbjct: 733 PQYIRNIALEAFQREFFKRQVKEKDYNGKQLINLHVICKMLDRLVRFDQKHTP-FSILEL 791 Query: 884 NIPAKMAIES----IGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLID---- 934 P + I I++ G DR+ K G I DYKTG + +L+ Sbjct: 792 EFPINGSFPIKKGNIHINIGGVIDRL-QEKDGKHIIIDYKTGHEKNSFKNLSELLSTKHK 850 Query: 935 --PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT--NDKKKYSADELSEKS 990 Q + A V YI+ K K I N+ + ++ Sbjct: 851 HIFQAFIYATLYSQKE-KNKPIVPVP--LYIQRIHKKKYSPILIYNNTPVDNFNKFEIDF 907 Query: 991 LKNLIEIVTLLQNGEQPF 1008 L + + L + PF Sbjct: 908 KNLLFKKIEELFDPNIPF 925 Score = 66.5 bits (160), Expect = 3e-08, Method: Composition-based stats. Identities = 29/285 (10%), Positives = 66/285 (23%), Gaps = 68/285 (23%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 +PF + L++ + L+ + + P RA L + + Sbjct: 7 TPFLYLVAENLISRFGTD-----------LSDIVVVFPGMRAKLFLNNYLHQYVKV-PLW 54 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P +++ + E + L ++ L I+ K + Sbjct: 55 SPQYQTIESLFTESSPLQIGDDI------------LLISELYKIYNQIHNKHFKKPFK-- 100 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEK---Y 177 + + + L + D I+ ++L L + Sbjct: 101 -----KTLDEFFFFGETLLNDFDEIDKNNIDAKLLFGNLQDLSTLRDNLSHLSENQIQAL 155 Query: 178 GMW--------------WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 + + L + RL E N S P ++ Sbjct: 156 IHHFKHIFQNKTPLQNNFRNIWNMLGEVYTSFKTRLKEKNISYPGMLMRQVVENTENLFK 215 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + G +L + + D + Sbjct: 216 EM---HYAFVGFNALNKCEEQLFELL---KEKSSFYWDYDKYYLE 254 >gi|148272376|ref|YP_001221937.1| putative ATP-dependent DNA helicase/nuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830306|emb|CAN01240.1| putative ATP-dependant DNA helicase/nuclease [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1089 Score = 151 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 123/1058 (11%), Positives = 248/1058 (23%), Gaps = 97/1058 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L + E L+P A V + P++ A LR E G T+ P+ ++ V Sbjct: 53 LRELVAERILAQGLDP---AEVLVLAPSRAAATRLRDELALRVGV-PTLGPLARTATSVA 108 Query: 86 EEKFTADLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 E + P + + ++ +A L+ P P L + Sbjct: 109 FEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGHEEL------GTGPAWPDPLGVEVRR 162 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L +++ E + + L L W+ AA F + + Sbjct: 163 LRAFRTELRELLMRATEEGVRPDALAELGRAHDVPEWIAAAAFAREYEDVVDSF--RGDH 220 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 + + ++ + AT L+ +A GA V+ D Sbjct: 221 LDSAELLAEAVLLVSRGEALTGIRLVVADDLHEATVATLSLLRALA--ARGADVVAFGDP 278 Query: 265 HIPTAIWNTITEKSTNITSSNTTYST---------HPQYSLAKLLDFLDIKR-------- 307 + A + + S+ H Q + L R Sbjct: 279 DVAAATFRGAEASALGRLSTVLGLPGLRTLVLDRVHRQPPALRALTSAVTARIGAAGAGR 338 Query: 308 ---------------------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 + L R + + + L Sbjct: 339 QRQAGSAPGLDDDADPIQIIEAPTRALELARLARRLREEHLLGGVPWARMVVLVRSGSLV 398 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------ENKKKSALITADRNLAR 400 ++ + A+AL ++D A A L Sbjct: 399 PQVARSLATAEVPTRMAVAGRALRDDLAALALIRAVDVVLGRVPLTPDIAAELATGPLGG 458 Query: 401 RVKLELTRFGINIDIS----AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + L R + + G S L L + + L Sbjct: 459 LDGVALRRLRLAMRQEELAGDGHRSSDELLVEALAAPGRLETLDLAPARRLGRLARTLQG 518 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV----PHWQSRL 512 + L + + ++ V + + Sbjct: 519 ARELASADGTIEELLWHLWEGSKLAKPWFEQALQTGIVADQANRDLDGVVALFTAARRFV 578 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 A V+ +L P T + ++ + V + Sbjct: 579 ERSPGRPASDFVEELLGAEVPEDTLSPQPLADTVLVATPSAVVGAGYEVVAVAALQEGVW 638 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 PNL +L +A+ E +++ + + + Sbjct: 639 PNLRLR---GSLLHPQRLSAVARGLDRADVDERAEVLGDELRMLALAVSRASRVVVLSAT 695 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA---AHDFE 689 + + ++ + ++ +++ + L ++ + A E Sbjct: 696 ANDEEAPSPFLRLVPPAPGIAEAEAGVESGRVAKDAPAALRIRPDHPLSLRGLVGALRRE 755 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 +A R + R + A R G + + Y Sbjct: 756 LAVVHRDAVLLDDGRVVSGDRTARRAADATRERGRAAASALARLAAEGVTGADPAEWYGL 815 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 ++P P S S ++ P + + G Sbjct: 816 REPSTTEPVVDLTDPEARVPVSPSRLEAFERSPLNWFIDQASGGS-------TSTAMGIG 868 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKISHSFL 868 T+ H ++ E P E+ + +L Sbjct: 869 TIVHAVMEEASLDPEADLRPAALEERLDERWGELPFESPWVGERERRQAGELIAGVSGYL 928 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN-PKKE 927 E + ++ + L G DRI+L + G V I D KTG + P + Sbjct: 929 RDFEAR--GGRMLAAEGGFELEVGVA--RLRGKIDRIELTEEGQVVIVDLKTGRHFPTRA 984 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFKIDCITNDKKKYSAD 984 QL A GS Q+ + L Y+ + + + Sbjct: 985 EIPAHA--QLGSYQLAYVEGSLEQVPAGTPSGGAKLLYVSGGTRGLPYR------ELPQE 1036 Query: 985 ELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 L+ + L + G + Sbjct: 1037 PLTREELDGFRARIAEAATGMAGATFNGTPDLGERDPG 1074 >gi|327389309|gb|EGE87654.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA04375] Length = 1091 Score = 151 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVGQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747 + +G + L + + L Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|221231864|ref|YP_002511016.1| ATP-dependent exonuclease subunit B [Streptococcus pneumoniae ATCC 700669] gi|251764624|sp|B8ZQ31|ADDB_STRPJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|220674324|emb|CAR68870.1| putative ATP-dependent exonuclease subunit B [Streptococcus pneumoniae ATCC 700669] Length = 1091 Score = 151 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGKQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|298230418|ref|ZP_06964099.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255441|ref|ZP_06979027.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus pneumoniae str. Canada MDR_19A] Length = 1091 Score = 151 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDSFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRG----------------------------QCYLDWTRKLDY--------- 747 + +G + L + + L Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDIERDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|168486451|ref|ZP_02710959.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC1087-00] gi|183570499|gb|EDT91027.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC1087-00] Length = 1091 Score = 151 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|168483211|ref|ZP_02708163.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC1873-00] gi|172043451|gb|EDT51497.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae CDC1873-00] Length = 1091 Score = 151 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + GA ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YIDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERKNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|306835514|ref|ZP_07468528.1| probable helicase [Corynebacterium accolens ATCC 49726] gi|304568571|gb|EFM44122.1| probable helicase [Corynebacterium accolens ATCC 49726] Length = 1035 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 119/1048 (11%), Positives = 266/1048 (25%), Gaps = 166/1048 (15%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 ++ + +P + + + +K + LR E E + +++S+ + Sbjct: 53 HALDRAQETGADP---SGILVVAASKESGARLRRELSERLEDYAAQSSMVRSIHSLAFAL 109 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + RL+ A + R L D + + + P + + Sbjct: 110 LRSASDEEL----------RLITGAEQDAVIRELLEDHAESGHGDWPEEV-RPALEYVGF 158 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A+ L D + DL +L + W A FL+ + + + S Sbjct: 159 ARQLRDFLLRSIERGLSPADLESLGAKYGRGMWSAAGTFLREYERV---QALSGAHSYSA 215 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + + E I++ + P +L+S +A+ ++ G D Sbjct: 216 AELVNQVLLRPELTSSHPWHTIVVDDAQLLDPTAGKLISRLASDAQLLVI--GGDADQSV 273 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + + + + L + GR + Sbjct: 274 FAFRGANSQFLEEFPAENSVE-------------LSQPHRSGSPACVSIVDSEGRLRDVV 320 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 + D IA+ +R + D Sbjct: 321 ADTVRRRHLDDGVQWRD----------------------------IAVIVRSTAD----- 347 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 + + + L + L+ S + L A+ + + Sbjct: 348 ---------IGQMRRTLLAAGVPVHISPTDVILAEQRLVSAMLLALRALEEDLSNAELEE 398 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 L+ P+ RG + + +P + Sbjct: 399 LLTGPVGGADPVTLRRLIRGLRRWAPDTRG---------------MDSLRELLHGELPDF 443 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 +L+E + + + + + + + S ++ T Sbjct: 444 NGQLTEREFSILERVRAVLAAGRQAIQAQASVEEILWEVWSATELDMRLQTSALRGGATG 503 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + +L + +S+ S I + + + + Sbjct: 504 SQADRDLDAMMALFDAAGDYSERRPGSSLQSF----LTHITEQELPTGVRDRRTAIPQAV 559 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE---------K 679 I+ + +DT+I+ G EG WP + DL + E Sbjct: 560 EIITAHGAVGREWDTVIVAGAQEGAWPSLGETGSIFGQEDLIDLLDRDIEPDTPVSHIAS 619 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + + F +A + EN SR++ G ++ Sbjct: 620 RLAEERRLFHVATTRHRNRLLIAAVENPNEDAFAEPSRFIAEFTGRGVDVPGTMARREAS 679 Query: 737 CYLDWTR-----------------------------KLDYTTKQPHYKRPKPFPPLEAQP 767 L T+ L + +R P Sbjct: 680 RALRATQFPRELGLDVPEPAPVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPESGEAE 739 Query: 768 RTYSFSEIKQLI------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 R + ++ +L P ++ R + K + L + + ++ Sbjct: 740 RRQAARQLARLAQAGIPGAHPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLKAIVG 799 Query: 822 KRINKNTPE--------INHLMKQIIDSHFEKENLPPHIDIIW-------------RHLF 860 + + ++ I ++ ++ F Sbjct: 800 NLAEDPSGAEHLLRGTMAHAFLEAIGRGMDAEKARLLVMEAYEFILDVPQWQLQSKLEEF 859 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 ++ + ++ + E V +P + + I + GF DR+ G + D KT Sbjct: 860 SRLLERTQQWAQQSEVKNELAGVEVPVYVEVAP-DIRVGGFMDRLMQDGDGNYLVVDLKT 918 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFKIDCITND 977 G + A+ + QL AL GSF R + + IT Sbjct: 919 GKS-AATQAEAEENRQLMTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKDSSKITTR 977 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + E E+ L + L+ + Sbjct: 978 TQSQLTAEALEEFSTLLPPLAAELRGPQ 1005 >gi|332075465|gb|EGI85934.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA41301] Length = 1091 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 121/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + GA ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGAEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIVPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLIAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLGAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|332201619|gb|EGJ15689.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA47368] Length = 1091 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|310657538|ref|YP_003935259.1| ATP-dependent deoxyribonuclease (subunit b) [Clostridium sticklandii DSM 519] gi|308824316|emb|CBH20354.1| ATP-dependent deoxyribonuclease (subunit B) [Clostridium sticklandii] Length = 1118 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 130/1018 (12%), Positives = 276/1018 (27%), Gaps = 153/1018 (15%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 ++ K I + S + + L P + I + + L + + Sbjct: 46 ALMDKVDSKGLIYAQVMSFERLSRLVLSRVGGLKR---PYIDEIGKHMALRLIFDKHEDS 102 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 LP E LS L+ + ++ L L Sbjct: 103 LPMYKTAYKKEGFLS-------------ELSHTLSELKKMAVPPSLL--LDKSNQIENNA 147 Query: 183 LA-ADFLKI--ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 L +I + + + + +I+L+ + + + TG Sbjct: 148 LLKQKLFEIGFIYNEFLNYMQDQYIDN--EDRISLLAEKINLYKEISNASFYFDSFTGFT 205 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 ++ +A D + ++ L + Sbjct: 206 ALELSVIEQLAQMGTSLCFALTYDETSAD--------------KDVFSPTSLTINQLKAI 251 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + E + + R + + + K P+ ++ DV Sbjct: 252 AKATGSEFEIEALVNESTKSKEIRYIEKALY---------------DYKAPSYKEKIKDV 296 Query: 360 ALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLAR-RVKLELTRFGINIDI 415 L EA + +EA A+ + + + K +IT +L + TR I I Sbjct: 297 KLFEALDMEKEAEHCALEVLSLVRDFGYRFKDILIITPMPHLYAGPISRVFTRLEIPHFI 356 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 + ++ +++ S L+ K + + + +K + + + Sbjct: 357 DVKRDIMSSPLITLIFSYLDMHIKNLRYEDVFSFLKSGFTQLDESQYMPLENFVLKWGIK 416 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 R + + + + + + K+ V L + + Sbjct: 417 GRMWLDENRFSEERFF----------DQYDSSEYKEKIKTAKDYLVSLFELNKKSFKGSG 466 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + + G L+ + + +E+ + + +++E Sbjct: 467 TGPSYAKALFGFLTEIKAQDQLEIFVNRL-REENAFDYANENAQIWNIILDTLDQLVEIM 525 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + E+ +I+ I + + + SR L GLN+ P Sbjct: 526 GEKPMSLEEFRNILYEGIKQHEIGIIPPALDQVIVATLDRSRSTAIKALFFMGLNDTYVP 585 Query: 656 KNTAKNPFLSRVMQSD-----LNLKTA-EKYIGQAAHDFEMANGTR--HLIYTRSLR--E 705 +P L + +NL + + + A L + SL E Sbjct: 586 HVGKDSPILLDDDKKKLKDLGVNLPSELDNAMSDETLSIYSALSKPNDKLFLSYSLSGGE 645 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKLDYTTK----- 750 +N S + RL L + + +L + Sbjct: 646 DNKALRPSTIINRLKTLFPNLHERSSLSDTSVFSYISTPDYSFGKLAGELRDLVEEKHLD 705 Query: 751 -------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 Q Y P + P S S +++ Sbjct: 706 KDWLSLYSWYIDNDGWEARRQRLLDNLFYKNQQEYITPTQAKQIYEAPFKASVSRLERFA 765 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-----------T 828 P+ + + LK + + P + GT+FH+ I + K NK Sbjct: 766 KCPFDHFVQYGLKPEPRKVHEIGPP--ELGTIFHSAIEDFAKLANNKASLPLLLDKKTCD 823 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS--FLEHEEKIQSSIEKIFVNIP 886 +I+ L++ + H + + K+ + + + E + Sbjct: 824 EQIDKLIENCVSDHIKILMDNSKRNAYMMKKIKKVGRRAAWTMVNQMSKGRFEPYDFEMK 883 Query: 887 A-KMAIESIG---IHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKETAQKLIDPQLS 938 + ++ I LTG DR+D+L V I DYK+ A +D QL Sbjct: 884 LPPIVLDLGEYGTIELTGQIDRVDILDENEKTYVKIIDYKSREKKFSLSDAYNGLDIQLI 943 Query: 939 LEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + L+ + A FY F I + +E+ ++ L Sbjct: 944 VYLESVLEHLPSLKKTKAYPAGAFY------FPIVDKLIESDLTDVEEIEKQIAGKLK 995 >gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] Length = 1091 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 109/1093 (9%), Positives = 267/1093 (24%), Gaps = 135/1093 (12%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 ++ V P A T+ + N V T++A Sbjct: 22 EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLGLTFTRKAAGQLL 81 Query: 58 QELRSEFIEITGKKSTILPII------KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111 + +RS + G TI P + F LL + L PV RLL Sbjct: 82 RRVRSRLARLAGAGLTI-PAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLG 140 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 L + + + L ++ S A + LA L++ + E +L Sbjct: 141 ETELWQLAFRVVCEHPAAL--DTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDR 198 Query: 172 LKNEKYGMWWLL-------AADFLK---------IASKYWTERLVELNASSPVGYQIALM 215 L + + L R+ E + Sbjct: 199 LVHTLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHRRMREERVMDFGMQMASAA 258 Query: 216 RAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPT 268 R + H + +++ + A +S++ +G + D Sbjct: 259 RLASTHPAVGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFGGGADDGLALTAVGDPIQSI 318 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 W + + +++ S +L E + S + RS+ + Sbjct: 319 YGWRGASATNLPRFTTDFPLSDGTPAPTLELRTSWRNPPEVLHLANAASVDARRRSVEVR 378 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387 P+ L + + + A +A L + Sbjct: 379 SLQPRPNAEPGSVRAALLSDVEAERDWV--------------ADQVAHRWHGGLAASGTA 424 Query: 388 -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +A++ A + L+R G+ +++ L + + ++L A Sbjct: 425 PTAAVLVRRNADAAPMADALSRRGVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAA 484 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++ P + G + + + + + + + Sbjct: 485 VRVLTGPRWRLGARDLTALWRRAVTLVD-----TGPSASDAVSATAEIVAKLEPDADDAC 539 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + +T S+ +++ + + Sbjct: 540 LADAVCDPGPAAAYSPTGYARIVALGRELTALRAHLSSPLPDLVAEIRRTLGIDAEVRAA 599 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 E + ++ G+ + + ++D ++ +G S Sbjct: 600 --QPISAGWSGTEHLDRFGDVVAEFASRGTPTASGLLAYLDTAEQVENGLAPAEVTVSSD 657 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674 + IL ++ L + + + L V+P + +L+ L Sbjct: 658 RVQILTVHAAKGLEWQIVAVPHLVGRVFPSTASPRTWLTDAADLPPLLRGDCATVSAHGV 717 Query: 675 ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + + + H + + Sbjct: 718 PVLDTSDVSDRKGLSDKIAAHKSSLDQRRTDEERRLLYVAITRAEHTLLVSGHHWGATES 777 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 P S +L + + + T +P Sbjct: 778 KPRGPSTFLTEIKDVIDASIEEGRPCGSIAVWADAPADGETNPIRDRVVEAVWPVDPVAG 837 Query: 768 RTYSFSEIKQLIN------DPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITEL 819 R L+ P + + ++D ++ Sbjct: 838 RRGPVDRGAHLVAEALSGECPEVGSDDDHGWVADVDALLAERDLAAQRAVPSLPAQLSVS 897 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------SHSFLEHE 871 + ++ + H +++ + + L W + + ++ + Sbjct: 898 AMVELGRDPEAVAHRLQRRLPRRPDSHALLGTAFHEWVQRYFQAEKLFDLDDLPGAVDAD 957 Query: 872 EKIQ---------------SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916 + + ++ I V +P M + + G D I G + Sbjct: 958 RQDRGELDELQTAFAVSPWAARTPIDVEVPFDMMLAGR--IVRGRIDAIFADGDGSFTVV 1015 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 D+KTG+ P QL++ A + ++ + Sbjct: 1016 DWKTGEMPTDPEVLAHNALQLAVYRLAWAR---LHGCPTSAVRAAFHYVRSGRTVMPDAL 1072 Query: 977 DKKKYSADELSEK 989 ++ L+++ Sbjct: 1073 PEEDDLIALLADR 1085 >gi|225854626|ref|YP_002736138.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae JJA] gi|225856771|ref|YP_002738282.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae P1031] gi|225722801|gb|ACO18654.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae JJA] gi|225724555|gb|ACO20407.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae P1031] Length = 1091 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGKQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|148998404|ref|ZP_01825846.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP11-BS70] gi|194397131|ref|YP_002037760.1| exonuclease RexB [Streptococcus pneumoniae G54] gi|251764617|sp|B5E4P4|ADDB_STRP4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|147755801|gb|EDK62846.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP11-BS70] gi|194356798|gb|ACF55246.1| exonuclease RexB [Streptococcus pneumoniae G54] Length = 1091 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 251/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQIFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|87309170|ref|ZP_01091307.1| hypothetical protein DSM3645_05530 [Blastopirellula marina DSM 3645] gi|87288161|gb|EAQ80058.1| hypothetical protein DSM3645_05530 [Blastopirellula marina DSM 3645] Length = 942 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 104/735 (14%), Positives = 225/735 (30%), Gaps = 73/735 (9%) Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L+ +D+ + L + S +I+ D + Sbjct: 214 LIGAVDLNQTLRSMLDQATAHGAEISALIAAPEELAAAFDAHGCLRPDAWSDRRAVVDPS 273 Query: 359 -VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 V L+E ++ E +A + + + D L +K L ++ Sbjct: 274 RVYLVEGPADQSE-QVVACLASFAGRYAPEDVVIGVPDEALVPELKQRLASHQLDSRFGP 332 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G + TL +L + + + + F +A ++HP + + + Sbjct: 333 GTAVVDTLPCRLLRTFSDYLRRR-SFATLAEALRHPDV--------WRLIEAERDPLETL 383 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + D T + + + V I + + + Sbjct: 384 DLFFGEHLRDALDATELEGETIADLMAQMDRIAIPLTQPICPLVDWRQPINELLQSIYGQ 443 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + ++ SI + L P L Sbjct: 444 RELTPASDEYRSIYLPIEAIQNALATWEEIPDTLQPLL---------------------- 481 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 +A E IDI+ RL+ + + P+ +S + +LG LE L + LIL N+G+ P + Sbjct: 482 ---SASEAIDILLRLLRADLI-PEEPRSGVIELLGWLELPLGDAPALILTSFNDGLTPSS 537 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL--IYTRSLRENNIPTIASRW 715 + FL ++ L ++ + + + A+ FE+ +R + P SR Sbjct: 538 ANGDLFLPNSLRERLGIEDNSRRLARDAYAFELLMNSRRDLDVIVAKRTSAGDPLAPSRL 597 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--TYSFS 773 L + + + + + + + + P + + S Sbjct: 598 LFGCDDTALPIAVERMFGAPEAINNGAVEFQSGETEQFNQAIEIPLPAPGPYQVDKITAS 657 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN- 832 +I++ + PY Y +IL+L ++ D G L H+ + + + + E Sbjct: 658 DIRRYLYCPYRYYLEKILRLRSYSDSARELDAAQFGNLAHDSLEAFGRSELRNSVDEAAI 717 Query: 833 -----HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIP 886 + +++ F LP + + F + + + + Sbjct: 718 RDFLQQALSELVREKFGARVLPAVRIQVEQLRLR--LQWFATAQARRAGEGWKIVRTETD 775 Query: 887 AK-----MAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQKL-------- 932 + ++ + + L G DRID + DYKT D KK A Sbjct: 776 NSQHEPLLVVDDVPVRLKGRIDRIDHHPDTNSWAVVDYKTSDTAKKPEADHHKGKFEERE 835 Query: 933 -IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + QL + + + Y L K + + D +++ Sbjct: 836 WFNVQLPFYRMIARE-----LGIGPHVEVGYFTLPAKRE---DVKYRAAAWEDADLDQAE 887 Query: 992 KNLIEIVTLLQNGEQ 1006 + ++++V ++ GE Sbjct: 888 EVIVDVVRQIRRGEF 902 >gi|182684116|ref|YP_001835863.1| exonuclease RexB [Streptococcus pneumoniae CGSP14] gi|182629450|gb|ACB90398.1| exonuclease RexB [Streptococcus pneumoniae CGSP14] Length = 1100 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 119 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 170 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 171 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 228 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 229 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 267 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 268 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 327 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 328 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 387 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 388 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 425 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 426 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 485 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 486 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 544 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 545 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 604 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 605 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 664 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 665 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 724 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 725 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 782 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 783 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 842 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 843 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 901 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 902 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 952 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 953 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 984 >gi|303262691|ref|ZP_07348630.1| exonuclease RexB [Streptococcus pneumoniae SP14-BS292] gi|302636123|gb|EFL66619.1| exonuclease RexB [Streptococcus pneumoniae SP14-BS292] Length = 1099 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 170 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 723 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|148995045|ref|ZP_01823988.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP9-BS68] gi|168488978|ref|ZP_02713177.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae SP195] gi|147926888|gb|EDK77937.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP9-BS68] gi|183572396|gb|EDT92924.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae SP195] gi|332073493|gb|EGI83972.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA17570] Length = 1091 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|148985757|ref|ZP_01818885.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP3-BS71] gi|147922061|gb|EDK73184.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP3-BS71] gi|301800091|emb|CBW32692.1| putative ATP-dependent exonuclease subunit B [Streptococcus pneumoniae OXC141] Length = 1091 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|237649367|ref|ZP_04523619.1| exonuclease RexB [Streptococcus pneumoniae CCRI 1974] gi|237820789|ref|ZP_04596634.1| exonuclease RexB [Streptococcus pneumoniae CCRI 1974M2] Length = 1091 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 250/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQ----------------CYLDWTRKLDY--------------------- 747 + +G Y D Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 748 ----------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + K Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDAHSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGSIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|303255774|ref|ZP_07341816.1| exonuclease RexB [Streptococcus pneumoniae BS455] gi|302597286|gb|EFL64390.1| exonuclease RexB [Streptococcus pneumoniae BS455] Length = 1091 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|154174406|ref|YP_001407580.1| hypothetical protein CCV52592_0909 [Campylobacter curvus 525.92] gi|112803770|gb|EAU01114.1| conserved hypothetical protein [Campylobacter curvus 525.92] Length = 783 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 69/455 (15%), Positives = 143/455 (31%), Gaps = 56/455 (12%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + GK + + + K + + +I + ++ + ++G LE Sbjct: 379 DDKRVGKKVQNELFMLGNLARYFKFSLRQICEIFLMGLSRLSL--DDVGGGKVGVMGVLE 436 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR + FD I+ N+ + PK + FL+ ++ L + + +E G Sbjct: 437 SRGMRFDGAIIVDFNDELIPKRSINEMFLNSRVREKSGLISYAQRENLQRFYYESLINGA 496 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + + + + +IASR+L+ + F D + L + Sbjct: 497 KKVAISYVSND---ESIASRFLKEFSFVKDARFSDE---------AYASLLGKPGVALNL 544 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + + + + SFS + ++ P Y +IL + P + G H Sbjct: 545 EPEEIVLEHDFFAQELSFSTLNLYLSCPRKYYYAKILAIPEPKTIGTAP-ASRLGEAVHK 603 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + E + + K L + + + ++E + Sbjct: 604 ALCEYYQ---GEFFRRSQRFDVTDFKKCLGKFALSS----LEFEILTVKFDIYAQYENER 656 Query: 875 QSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 ++ + ++ +E G+ + G DR+D L G I DYK+G + Sbjct: 657 LKEGVRV-LECEKNVSGVEFEGVKIRGVIDRVDELS-GQKMIIDYKSGK-------FEDK 707 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 QL A L + FY L + + + L+ Sbjct: 708 SLQLPFYQALL----------GERCEAFYYDLGGEMTLVPSRSS-------------LEE 744 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L + L+N + I+ + Y L Sbjct: 745 LRAAIERLKNINKTRINFAPNPGQQCRYCAYKILC 779 >gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] Length = 1041 Score = 150 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 118/986 (11%), Positives = 246/986 (24%), Gaps = 183/986 (18%) Query: 46 SVTIYVPTKRAIQEL----RSEFIEITG----KKSTILPIIKSLGDVVEEKFTADLLLSY 97 + T++A EL R ++G + + P + + + Sbjct: 67 QILGLTFTRKAAAELASRIRERLARLSGLDGVGQLSGEPTVSTYHSYASGIVSEHGPRIG 126 Query: 98 NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 V + + +LA L++ + L+ L++ + Sbjct: 127 LEPGTVLSPAQTWQLAY-------AAVRGHDGDMSAVSLTVETVVKRVLSLSDELSEHLR 179 Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY---------WTERLVELNASSPV 208 E E+ ++L E+ G A L + R A Sbjct: 180 EPEELEQFTQELANEIGERVGKGTQKTAQLLMALQSRLQLLPIVADYRRRKRAEGAVDFA 239 Query: 209 GYQ-----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 A E + + G +++ + A L+ ++ G V D Sbjct: 240 DQLHYAASAAAAAPEVGRVERERFGVVLLDEYQDTSHAQVELLKSLFG--GGHPVTAVGD 297 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 W + + + + ++ + +L R Sbjct: 298 PCQSIYAWRGASTGTLSRFPGDFPHADGTEADRLELTASW-------------------R 338 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + + + +R + + +V + +EA +A + Sbjct: 339 NRASILTVANTVSEPLRTMGFPVSPLEPGVPGEGEVTAAMLNTADDEAEWVATRIYRLWA 398 Query: 384 ENK-----------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 +N +A++ R+ R++ L G+ +++ L L S Sbjct: 399 DNGFAPGSPVEGMPPTTAVLARRRSQIPRLEKALRAKGLPVEVIGLGGLLDAPEVRELHS 458 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L + + A L+ P + G + A A EL R ++ + Sbjct: 459 TLTVLARPTAGPAFMRLLTGPRWRIGPRDIAALHA-RARELAPERRGFEPSAEGLNEASL 517 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + + + + +E L + Q ++ L+ Sbjct: 518 AEALEDLGDLRRYSDAAAERYTALREELGYLRSRLDQPVSDLIA---------------- 561 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 L+ LD + E + + ++D Sbjct: 562 ------EILKVSGLDIEVAVHRGDSERLDAFIDEAVRYTSTASLPSLDGFLSYLDAAEER 615 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 G + E + + IL ++ L +D + + GL +GV P +L+ + Sbjct: 616 ERGLELTGTTEHTGAVQILTVHAAKGLEWDCVAVPGLAKGVLPGKVMGGSWLTDTGKLPY 675 Query: 673 NLKT-------------------------------AEKYIGQAAHDFEMANGTRHLIYT- 700 L+ + + + R ++ Sbjct: 676 PLRGDAAELPYFRLGGVTKAAELSRAEAEFKKDVQFHHEVEERRLAYVALTRARTHLFAC 735 Query: 701 -RSLRENNIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTKQPH----- 753 + S +L + GG D + L D+ +P Sbjct: 736 GYWWDDGESAREPSPYLDETVAAGGRVDEWIEDPGEENPLLATELSADWPEPEPLGSNQI 795 Query: 754 -----------------------------------YKRPKPFPPLEAQPRTYSFSEIKQL 778 P S S++ Sbjct: 796 TVAAAAGAVRASDGALDDSAQAKRWAEEAELLLAERAESASDGMEVPVPSQLSVSQLVAW 855 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 D AR + P RGT FH + + + ++ Sbjct: 856 HADAQEFAARLRRPVPEPPAPHTR-----RGTAFHAWVEKRFDGGTLFDMDDLPGAADGE 910 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 D+ E L + S I V +P +E G+ + Sbjct: 911 PDTDAELAALQEAFNASEWA------------------SRTPIAVEVPFVTVLE--GVVV 950 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNP 924 G D + G +I D+KTG P Sbjct: 951 RGRMDAVFATDDGGYEIVDWKTGRPP 976 >gi|332200489|gb|EGJ14561.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA41317] Length = 1091 Score = 150 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 120/932 (12%), Positives = 249/932 (26%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Q Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPDEDSFDNRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KADGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] Length = 1066 Score = 150 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 92/899 (10%), Positives = 234/899 (26%), Gaps = 88/899 (9%) Query: 59 ELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQRLLELARLIL 117 +R G + + I + E +L L + PVS ++++ L +LI Sbjct: 76 AMRKRLTGFIGPDAYRV-NIHTFHSFCNEVIQDNLSLFDKHSLDPVSELEKIQLLKKLID 134 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK--WEDLHALK-- 173 + P + + + D I+ T + + Sbjct: 135 GFTKDNPLKRYRGDVYFEMKNLAQLFSTMKKEGWTVDYINEAITAYIESLPSREDFIAKK 194 Query: 174 -----------NEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIALMRAEAE 220 ++ ++ +T + ++ A E Sbjct: 195 AAGTYVRGDVRTDRIAREKEKMIRLQAAVEQFPVYTAFMHTAGRYDFDDMINWVIGAFEE 254 Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I++ + RL+ + + D + + Sbjct: 255 YPDLLADYREKYQYILVDEYQDTSGTQNRLVQLLTEDQESPNIFVVGDDDQSIYRFQGAS 314 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ + + + H L V+ + +V+ + + P+ Sbjct: 315 IENMALFAETFADNLHT--------IVLTHNYRSVQPILDVAMSLIANNGNSRLVNQLPE 366 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALIT 393 I + P + + R+E I + L++ + A+I Sbjct: 367 LDKQLIAAIPAAQSPVPV-------IRRYNTSRDEMTDITQQIARLLEKGIAPGRIAVIY 419 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + + + I L + + S+L +A V P Sbjct: 420 RENKYGEELARYCRQQQLPFYSKRSINLFEVPFARKVLSILR---------YLACEVDTP 470 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + + L + +++ ++ W + Sbjct: 471 YSGDDL-------LFSILHYDFYNIPAIEVAKISIRAAEKGYREKSSIRQYLQEWAHTRN 523 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 A ++ + + ++ + + E Sbjct: 524 LTLFTAAPE--QALVDFSAMMEKLIRDAHNLTLQQLFAAVINECGVLSYAMQSPE----- 576 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANA-IEWIDIITRLIDGETVKPKIEKSSTLFILG 632 W + + L + + ++ +D++ + + + +L Sbjct: 577 KPWLMKVLQALFDFVKEETHRNPDLTIAPFMDMVDLMRHNGITIPLVQVSGNETGINLLT 636 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F+ + + G N +W + S T+ + Sbjct: 637 AHGAKGLEFEYVFIAGANAYLWEEKVKNGSGFSFPDTLFTTTLTSTDEQELRRLFYVAIT 696 Query: 693 GT-RHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 +HL + R + P S ++ + L + LDYT + Sbjct: 697 RAEKHLYISYPEYRTDGKPLEPSLFVTEI--LDQHQLPVEKVIIPEEVQFRFAALDYTPE 754 Query: 751 QPH--YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 K +P + + + ++ P Y + ++++ + T+ Sbjct: 755 LAPEIAKTDQPLIDNLLANFVMNVTALNNYLDCPLGFYYKNLVRVP-----SGRSENTEF 809 Query: 809 GTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 G+ H + +L K P ++ S + Sbjct: 810 GSAVHYALEKLFLKMQESGRYEFPSKEEFIRDFTWSMLRN---RESFTRESFERRLEYGR 866 Query: 866 SFLEHEEKIQSSI--EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD-ITDYKTG 921 L+H + + V + + G+ L G D+++ G + + DYKTG Sbjct: 867 DILDHYYDTWLPHWNKVVSVERNIRSVV-VNGVPLKGKIDKLEF--DGNLVNVVDYKTG 922 >gi|322378445|ref|ZP_08052898.1| exonuclease [Helicobacter suis HS1] gi|321149136|gb|EFX43583.1| exonuclease [Helicobacter suis HS1] Length = 769 Score = 150 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 73/428 (17%), Positives = 146/428 (34%), Gaps = 55/428 (12%) Query: 604 EWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 D++ + + + + +L LE R L+F+ ++L + + P N Sbjct: 377 PLADLLELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNL 436 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 FL+ ++ LN+ T + + H + T+ + + + + L Sbjct: 437 FLNSTTRARLNIPTLKDHENLQKHYYYQILQNTKQVDIAYYVDDKTTHSKMLLELDLNTQ 496 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + +F + YLD + + ++S ++ + Sbjct: 497 ISPANFALFPPENKHDYLD-----------------EECKGKVLEGFSFSATKFNDYLTC 539 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P Y + I L D+ + GT H ++ + ++ N + + L++ D Sbjct: 540 PRRFYLKYIKNLTPPSK-----DQFNMGTFLHKLLKKHYEEHKN-TPVKASDLLELAQDE 593 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + + + +F E E++I S E + K +I G G Sbjct: 594 QLN------ALQRLEFEVAVDKMSAFFEKEKEILQSREVLVCEKKFKTSIA--GFTFNGK 645 Query: 902 ADRIDLLKSGFVDITDYKTG-----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID L+ G I DYK E ++ D QLS+ AL S + + Sbjct: 646 IDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDYQLSIYHLALA----SSLQDAR 701 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 + +++ LK+ ++ E + LK L I+ PF R ++ Sbjct: 702 I-RVYFYDLKKGELLEEYLQVVHFK--QEQLQNQLKKLTSIM--------PF--EKRPNK 748 Query: 1017 KSNIQSEY 1024 + Y Sbjct: 749 DNCSYCPY 756 >gi|149013114|ref|ZP_01833960.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP19-BS75] gi|303260558|ref|ZP_07346524.1| exonuclease RexB [Streptococcus pneumoniae SP-BS293] gi|303265227|ref|ZP_07351138.1| exonuclease RexB [Streptococcus pneumoniae BS397] gi|303266990|ref|ZP_07352864.1| exonuclease RexB [Streptococcus pneumoniae BS457] gi|303269650|ref|ZP_07355408.1| exonuclease RexB [Streptococcus pneumoniae BS458] gi|251764801|sp|B2IPX4|ADDB_STRPS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|147763059|gb|EDK70002.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP19-BS75] gi|301801980|emb|CBW34708.1| putative ATP-dependent exonuclease subunit B [Streptococcus pneumoniae INV200] gi|302638271|gb|EFL68740.1| exonuclease RexB [Streptococcus pneumoniae SP-BS293] gi|302640821|gb|EFL71210.1| exonuclease RexB [Streptococcus pneumoniae BS458] gi|302643470|gb|EFL73743.1| exonuclease RexB [Streptococcus pneumoniae BS457] gi|302645198|gb|EFL75434.1| exonuclease RexB [Streptococcus pneumoniae BS397] Length = 1091 Score = 150 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 254/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1096 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 121/1040 (11%), Positives = 258/1040 (24%), Gaps = 123/1040 (11%) Query: 45 ASVTIYVPTKRAI----QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTAD 92 V T++A + +RS + G + P + F Sbjct: 64 GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVST-YHAFAGS 122 Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAK 150 LL Y L PV RLL L + + + L + + S +W LA+ Sbjct: 123 LLRDYGLLLPVEPDTRLLSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAE 182 Query: 151 NLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADF---------LKIASKYWTE 197 +L D + + E L + L + E Sbjct: 183 HLVDT-SQLRETHLELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDE 241 Query: 198 RLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--A 250 R+ + + R A +G +++ + A +S + Sbjct: 242 RMRAVKVMDFGMQMASAARLVAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFAG 301 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +G + D W + + +++ S + +L + Sbjct: 302 GVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTL 361 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + +S E RS+ + PD L + ++ +D I+A R Sbjct: 362 RVANAISAEARRRSVAVHALRPRPDAPPGTVRCALLPDVVAEREWIAD--HIDAHYRRAR 419 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A ++ +A++ A + L GI +++ L + + L Sbjct: 420 ADGVS----------PPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAEL 469 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLK 489 ++L + A ++ P + G + AL G + + + Sbjct: 470 VAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAALWQRARALGGAGTAGGPATAEAIASA 529 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + + A + + + Sbjct: 530 ADPRNVEADAVCLADAIADPGPAEGYSAAGYARIAALAAELSALRAHLDHPLGDLVAVVR 589 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 V L G + + S A + ++D+ Sbjct: 590 RVMDLDCEVRAAAAAGWAGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDVA 649 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV-- 667 + +G P + +L ++ L + + + L+ GV+P TAK +L+ Sbjct: 650 ESVENGLPAAPLAVARDRVQVLTVHSAKGLEWQLVAVAHLSGGVFPSTTAKTTWLTDAAE 709 Query: 668 ----------------------------------MQSDLNLKTAEKYIGQAAHDFEMANG 693 + + + + Sbjct: 710 LPPLLRGDRARPGALGIPVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVTR 769 Query: 694 TRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + P S +L + + Sbjct: 770 AEDTLLVSGHHWAATGIKPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWAPAPADGERNP 829 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 +P R L+ A D +R Sbjct: 830 LRDNAVEAVWPADPLASRRGEVERGAALVRQAMAAEPGDPGADVEGWAADVDALLAERAR 889 Query: 811 LFHNIITELIKKR-------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF--- 860 + L + + ++ ++ + S E L + W F Sbjct: 890 VTGPPPQALPGQLSVSSLVGLARDPAGAARRLRHRLPSRPEPHALLGNAFHAWVQKFYGA 949 Query: 861 --------------------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 +++ E ++ + V +P +M I + G Sbjct: 950 ECLFELGDLPGAADSDVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVRG 1007 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 D + G + D+KTG P A + QL++ A + +++ V Sbjct: 1008 RIDAVFAESDGGATVVDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRTA 1065 Query: 961 F-YIRLKQKFKIDCITNDKK 979 F Y+R + + + + Sbjct: 1066 FHYVRARTTVVPEALPTSDE 1085 >gi|116873699|ref|YP_850480.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466556|sp|A0AL19|ADDB_LISW6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|116742577|emb|CAK21701.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1157 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 119/967 (12%), Positives = 268/967 (27%), Gaps = 128/967 (13%) Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 L + L + + LA + ++ EE DL Sbjct: 97 AALDQKDKLKIFSKATSRKGFYSELAKLFKEMKQEEVSVADLENSAI-NMSKSVTNKIHD 155 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + + + + E L + L+ + + III G T ++ Sbjct: 156 ISLIYQKYEELLA--GKFLENEDYLRLLADKIIESDYLNQTEIIIDGFTSFSKQELTVIE 213 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + + V L+ I + E + S+ ++L ++ I Sbjct: 214 KLMEKCDKVTVSLTLNV---PEIQKGLEEYNMFKQSTEAY------FALLEMAKLNKISV 264 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 E K ++ + ++ D+A+ +A+N Sbjct: 265 ESDKLFLENKRAKSDSLAFLADVWGNNKFV-------------TFEEKPQDLAIHQANNR 311 Query: 368 REEAISIAIALRMSLD--ENKKKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTT 424 R E IA +R + A++T + + + + F I I I ++ Sbjct: 312 RAEIEGIAREIRQLTLKGYRYQDMAILTRNISDYDVLCETVMESFDIPIFIDKKRAMAKH 371 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL------------- 471 + S ++AI + I VK + R K + Sbjct: 372 PFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVSENTSIMRRKADILENYVLENGIQNK 431 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV---------- 521 G+ I L + +L + + + + L E + Sbjct: 432 WKWEKEGDWIYRKIRGLSTNLLPQTDEELETQAIINEMRNLIVEPLSILENNLAKARTGT 491 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLS--ISDWTKLTVTCLQNVCLDEHRK-----LPN 574 + + + + ++ + + +V + Sbjct: 492 EFAMALYHFLEQVKAVEHLESWRQTAEENGYLELAREHEQAWSSVSELLDEFVEVLGEES 551 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L + +++ + + + I D+ + V I + + L Sbjct: 552 LDINSFAEIVATGLDALEFSLLPPSLDQIVLSDMENAKLLDMKVIFAIGMNDGIMPLRQK 611 Query: 635 ES-RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD------ 687 + L + D L N + P + ++L + + ++ A D Sbjct: 612 DKGILSDQDRDSLRAENSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVL 671 Query: 688 ----FEMANG------TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736 + + T ++ S +++ G + KRG Sbjct: 672 SESNYLRKIKGQFKKLNEEVYLTDPSLLSDEEQ--SSYIRSKQATLGLLTSQLQMYKRGY 729 Query: 737 C-----YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------SFSEIK 776 + + + T + K+ E + + S S ++ Sbjct: 730 PLSNVWWDAYNGYFEDTKESKVAKQVLSSLYYENKTKALHETTAKNLFGENIHASVSRME 789 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP------- 829 + + + +A+ LKL+ HF D G +FH + + + N Sbjct: 790 KFFSCEFQHFAQYGLKLEERAHF--KLQAVDMGEIFHGAMEWISAELKRNNQDWGNLTEE 847 Query: 830 ---EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHEEKIQSSIEKIFV 883 ++ L + + E L ++ +I + +E+ S+ I + Sbjct: 848 ECRQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPIGL 907 Query: 884 NIPAKM--AIESIGIHLT--------GFADRIDLLK-SGF--VDITDYKTGDNP-KKETA 929 + + I S+ I L G DRID+ + + I DYK+ + Sbjct: 908 EVDFGLKGDIPSLKIPLKSESELLLQGRIDRIDVAEQDDRTFLRIIDYKSSSHDLALTEV 967 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + Q+ + + I + A + Y + +F + + + Sbjct: 968 YYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQFVQADKELSDEAIAKELQKS 1027 Query: 989 KSLKNLI 995 +K LI Sbjct: 1028 SKMKGLI 1034 >gi|322380356|ref|ZP_08054564.1| exonuclease [Helicobacter suis HS5] gi|321147226|gb|EFX41918.1| exonuclease [Helicobacter suis HS5] Length = 769 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 73/428 (17%), Positives = 146/428 (34%), Gaps = 55/428 (12%) Query: 604 EWIDIITRLIDGETVKPKIE-KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 D++ + + + + +L LE R L+F+ ++L + + P N Sbjct: 377 PLADLLELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNL 436 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 FL+ ++ LN+ T + + H + T+ + + + + L Sbjct: 437 FLNSTTRARLNIPTLKDHENLQKHYYYQILQNTKQVNIAYYVDDKTTHSKMLLELDLNTQ 496 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + +F + YLD + + ++S ++ + Sbjct: 497 ISPANFALFPPENKHDYLD-----------------EECKGKVLEGFSFSATKFNDYLTC 539 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P Y + I L D+ + GT H ++ + ++ N + + L++ D Sbjct: 540 PRRFYLKYIKNLTPPSK-----DQFNMGTFLHKLLKKHYEEHKN-TPVKASDLLELAQDE 593 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + + + +F E E++I S E + K +I G G Sbjct: 594 QLN------ALQRLEFEVAVDKMSAFFEKEKEILQSREVLVCEKKFKTSIA--GFTFNGK 645 Query: 902 ADRIDLLKSGFVDITDYKTG-----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 DRID L+ G I DYK E ++ D QLS+ AL S + + Sbjct: 646 IDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDYQLSIYHLALA----SSLQDAR 701 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 + +++ LK+ ++ E + LK L I+ PF R ++ Sbjct: 702 I-RVYFYDLKKGELLEEYLQVVHFK--QEQLQNQLKKLTSIM--------PF--EKRPNK 748 Query: 1017 KSNIQSEY 1024 + Y Sbjct: 749 DNCSYCPY 756 >gi|307127337|ref|YP_003879368.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 670-6B] gi|306484399|gb|ADM91268.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae 670-6B] Length = 1091 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEVMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILTPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYQQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPIQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|302037408|ref|YP_003797730.1| hypothetical protein NIDE2085 [Candidatus Nitrospira defluvii] gi|300605472|emb|CBK41805.1| conserved protein of unknown function, putative ATP-dependent nuclease, subunit B [Candidatus Nitrospira defluvii] Length = 1076 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 132/1046 (12%), Positives = 275/1046 (26%), Gaps = 163/1046 (15%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF + L++ V A+V + VP+ + + L+ + + + + Sbjct: 8 PFHPTLESQLVHDLRVLKSGNPQ------AAVALVVPSDQLCRSLKRLLV-VKQGLALLN 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 I S + + L + R +EL R +++ Sbjct: 61 VHILSFHQLALQLQRERLTTVGA-----AGAVRQIELVTDTFFERLLQHLGQRNVPQTGA 115 Query: 136 LSLPISPANAI-WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L LP P+ A L +L D+ D L A++ ++ L Sbjct: 116 LRLPQLPSGAWPALWASLRDLKDATVDSGL---ALRAVEEGQFPPEDGEKLKGLFTLYAA 172 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 L SP + + + GS L+ +++ Sbjct: 173 LRNGSAALGVGSPDDLAALVTDFVPASPFLRSLSGLWYYGSYDLTQTQLTLLESLS---- 228 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + + S P Y Sbjct: 229 -----------------------VSLPVTVYFPLSERPAYGF------------------ 247 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 R + + +D R + P + V + A +E + Sbjct: 248 -------ARQFLERHLYPIAGGADERAGAASGDAAPASPEVHVSVEVRNAAGIDDELTLV 300 Query: 375 AIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSIL 430 + ++ N + ++ + + I SA PL L Sbjct: 301 CKQILSLVETNGFAFDEIGVVGRTLVPYQASLKRTFDQHRIPFLSSATAPLLQEPSVKTL 360 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 L A+ ++ P + ++ + L A+ + + + Sbjct: 361 LHLARLKGSGLHRPAMLDVITSPWNRRLTADRGGVEPRPDLWRSAVLALGITRGEEEWRR 420 Query: 491 LVL--DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 L + + + D LL + I + + Sbjct: 421 LAQLGRLESWSSDADDPVTEELESLAIDGVQLRLLWGCLSPLIEDVKRLPEQGGYSAMTD 480 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS-CIKANAIEWID 607 + + +T V + + LS +F+++ + EW D Sbjct: 481 AFCSLAETHLTVPLGVSTAIDEMSQWDDASDVNEALSGVFAELRALDRLDVNVTWDEWAD 540 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ T + +L + +R L F L L G+NE ++P+ ++ FL Sbjct: 541 TFAEMLARATRPLAPPSHHGVQVLDAMAARGLGFRALFLIGMNEKLFPRYIHEDGFLRDR 600 Query: 668 MQSDLN------LKTAEKYIGQAAHDFEMANGT--RHLIYTRSLREN-NIPTIASRWLQR 718 + L+ + + G+ A FE+ + L + + P S +L Sbjct: 601 HRLVLSETLGYKIDQKLQGYGEEALLFELLRASAGERLYLSYQRADAAGRPLAPSGYLDA 660 Query: 719 LLVLGGTDFFDNLKKRGQCYLDW---------------------------TRKLDY---- 747 + V + ++L + + D L+ Sbjct: 661 VGVAPHSSVPESLFALPRRWPDRVDLPLFMPHLQTREELSVSTVLQGRDVAALLEAIGRD 720 Query: 748 --------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + R S + ++ P+ ++ Sbjct: 721 GLLFSHGLGAQGVIESGHPALSAYDGILEHAGAHWQTVTERGLSPTALETYARCPFQYFS 780 Query: 788 RRILKLDFIPH-FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 ++LKL+ + + G L H+ + I + P + I Sbjct: 781 GQVLKLESVRPVPSMELTPPAMGQLCHDALRRCYLALIQQGWPATALSVSAITAEVNRAV 840 Query: 847 NLPPHI------------DIIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIE 892 + + ++ + L+ E + S + A + Sbjct: 841 LQASEAYARTHSTGYALTWELAQESVRRLIEATIMLDREAALASGFLPAEFELDANGMLP 900 Query: 893 SI----GIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLI--------DPQLSL 939 I L G DR+D SG V + DYK N + E + + Q +L Sbjct: 901 DGSGGQEIPLRGRWDRLDRHPGSGAVRVIDYKYRANDRVEAKDRNLLQAALRAQRLQPAL 960 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRL 965 A AGS + + ++ L Sbjct: 961 YAVMTAAGSSGDQQGPQPEQVEFLYL 986 >gi|124486139|ref|YP_001030755.1| methyltransferase type 11 [Methanocorpusculum labreanum Z] gi|124363680|gb|ABN07488.1| ATP-dependent nuclease subunit B-like protein [Methanocorpusculum labreanum Z] Length = 915 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 91/760 (11%), Positives = 213/760 (28%), Gaps = 111/760 (14%) Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLA 399 T +IP + + V + + R E S ++ ++ K AL+T A Sbjct: 188 TRPPVTEIPGLPETCRGV--YQYTDTRTELRSALESIAALIESGVPPKDIALLTPSLPSA 245 Query: 400 RRVKLELTRFGINIDISAGIPLS----------TTLHSSILTSLLNAIFKLNDFMAIATL 449 + EL + PL + L A + + Sbjct: 246 LPLLDELVPDFSVLLEGTRRPLGFFAGEDIPIENLPPVRCALAWLAAFAFDCRIDDLKII 305 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 ++ P R + A + + R ++ Sbjct: 306 IESPYFSLKKDWLTAGRLEKAGIITKTEKGR-----------AAWRTVAERLAAARKKEI 354 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + L+D + + + +++ + L + + Sbjct: 355 GEHDAAFQASLDRLLDRLDENLE-------------HTGTLAGHCRALKADLSALGWTKI 401 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + P L K+ T + + E+ +++R + T E Sbjct: 402 QMKPQDE--AARHAFLRLLDKLALTSLAEVSYTVREFYAMLSRFCEKTTKISYPESKHAF 459 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 F + + GL+ P+ A P L+ + + + + + + F Sbjct: 460 FAGDLRSVAGTKRPYVFITGLSADRIPRIEAAIPLLNAQETARIQPDRVQNLLDASRYYF 519 Query: 689 EM--ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLD 740 + LI + + + S +L RL + R L Sbjct: 520 HAAGLAAEKQLILSCAGHDGEKSLTPSPYLTRLAEPEPKSPGFLAHSMTANQTRAGELLA 579 Query: 741 WTRK-----------LDYTTKQPHYKR-------------------PKPFPPLEAQPRTY 770 R+ L+ + + + F + + Sbjct: 580 AGRENECEGLFGIPSLETAAEIIGIETVDRTGTPGIYDAEFAGDGIAEAFAAAYTEKTEF 639 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + + +++ P+ Y L+L+ +R GT+ H + ++ ++ T E Sbjct: 640 APTVLERYRECPFKWYLADHLRLE--NPADFSAERIIVGTVMHKAMERFFREYMSPLTEE 697 Query: 831 INHLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHS---------FLEHEEK-IQSSIE 879 + + +E HI W+ + + + + E + Sbjct: 698 NESDAAEFLKKLVTEEFKNRHIKTPSWQSMLNGYLGNGGLESSCDLIIRLETGFYAAGFR 757 Query: 880 --KIFVNIPAKMAIESI-GIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933 ++ I +TG+ DR+ + K + DYKTG+ + ++ Sbjct: 758 TLPEWLEQKVTAEIPGGDPFTVTGWVDRVMFNEQTKE--FAVVDYKTGNVKTWKELEEGS 815 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC---ITNDKKKYSADELSEKS 990 Q+ L A++ + Y+++ D + K++ S +E+ + + Sbjct: 816 ALQIPLYTEAVRQ-----MTGCSPLPGTYLKIAPDEVKDKNPYLVRGKQQKSVEEVGDAA 870 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 E +++ G+ +S + Y + R Sbjct: 871 FAFCRETREMMKAGKCGTVSGET---CPDDYCPYKRICRF 907 >gi|319778428|ref|YP_004129341.1| hypothetical protein TEQUI_0246 [Taylorella equigenitalis MCE9] gi|317108452|gb|ADU91198.1| hypothetical protein TEQUI_0246 [Taylorella equigenitalis MCE9] Length = 937 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 98/718 (13%), Positives = 210/718 (29%), Gaps = 89/718 (12%) Query: 353 QKCFSDVALIEADNEREEAISIAIALRMS-LDENKKKSALITADRNLARRVKLELTRFGI 411 + +++L AD+ E K+ A++ + + Sbjct: 262 RPRAQNISLFSADSIETELKYAIDWASHLMASNPNKRLAIVVPNLQNNLLLIERELANQK 321 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-EKYLSRAKNA 470 + IS G L + I + LV + F + Sbjct: 322 HWHISLGRNLDEWSLIRSVICWFELILNFHKQKIPLQLVGNAFLNAEFGFSESERETLAH 381 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 L+ + + L L+ I K + + ++ D Sbjct: 382 LDYLLRKRKGKFISHKQLSELMYKHI--HKKTETLFNENDDWINAGQKDISHWADAFRIT 439 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 +T ++ + + KTLSS+ Sbjct: 440 LTEFEFPADAPQNSTNYQLCTAL------------------------DNVLKTLSSMHQM 475 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + K + E +D+ +L+ + + E S L I+G E +D + + GL Sbjct: 476 L------PKIDVYEAVDLFKKLLSNTMFQVQREADSKLDIMGLYEVEGGRWDHVWVCGLQ 529 Query: 651 EGVWPKNTAKNPFLS--RVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENN 707 P + + NP + + + ++L T + F + + +I + S E N Sbjct: 530 SNTLPPSPSYNPLIPLLSQINAGVDLTTWNSTWELSEQIFNGILHTSNDVILSYSDLEEN 589 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 S +L + + KR + + LD E + Sbjct: 590 RKIYPSSFLIPYMEKMEVLKPPAIPKRDK---AIMQTLDDRDGLT----------FEDEI 636 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPH-FKKDPDRTDRGTLFHNIITELIKKRIN- 825 + I+ +P YA+ L +D + K D + + +G +H I+ KK + Sbjct: 637 KRGGAHMIELQSINPLWNYAKYRLNVDELRPYPKDDYNASIKGDFYHKILELFYKKYRSS 696 Query: 826 ------KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ L+ + ++ + + F++ E +S E Sbjct: 697 SSVTKIEDLSLELDLIIDQSANEVLAHIESVNMQNAIKSAAKAVMVYFIQQEISSRSPFE 756 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKL 932 + V E + I+ DR+D + I DYKTG +L Sbjct: 757 VVHVEKNEIYTKEYMDINF--KVDRVDRVGD-KYFIIDYKTGKPLTSTSMKKYWIDRDRL 813 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANL------------FYIRLKQK------FKIDCI 974 QL A +++ + L Y+ +++ Sbjct: 814 KKCQLPFYACSIEEEISENLIGVSNVFLHQGKLAQGSVLKTYVGFVDDVQSYFNDELNHD 873 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + +L + + +++ +++G P ++ + ++ E R+ E Sbjct: 874 VFKFTEADWWDLLKTWKSKINDLLDEIKDGISP---NVYIDKEDMKYCEIKPFLRIFE 928 >gi|152991781|ref|YP_001357502.1| hypothetical protein SUN_0185 [Sulfurovum sp. NBC37-1] gi|151423642|dbj|BAF71145.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 776 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 74/465 (15%), Positives = 172/465 (36%), Gaps = 51/465 (10%) Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 +L E+ + + + + EW+ + + + T+ + + +LG Sbjct: 355 DLLDAEKQERVEEKYRHFLTLFRDETLTYKEWLFLWLKTLSKITL--DDVRGGKVTVLGV 412 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN- 692 LE+R ++F +++ NEG P +++K+ FL+ +++ L T + + Sbjct: 413 LETRGVSFKGVVIVDFNEGTVPASSSKDMFLNSTVRTFAGLPTRQDREALQKQYYNRLLQ 472 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 S E+N + S++L L + + L Q Sbjct: 473 QAESAAIIYSSSESN---LPSKFLYELG-----------LGKAERPKVPLSLLYGHPSQL 518 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + +A +T+S S +K + Y R I + D + G Sbjct: 519 KAEEAPVVEAFDATAQTWSASRLKTWLECKRKYYYRYIKNIKAKEE-----DELNEGAFL 573 Query: 813 HNIITELIKKRIN-KNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEH 870 H ++ +L K++ + + E+ + ++D +E+ ++WR ++H Sbjct: 574 HTLLEQLYKEQDSYASEKELTKRLHALMDELLLEEDAKNRYRKLLWREKLKGFVKKEIDH 633 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN---PKKE 927 + + + + I G+ G DRID + + + DYK+G PKK Sbjct: 634 FK---AEWRVVERELEVVGEI--GGLKFKGRIDRIDQNATDTL-VLDYKSGRVEKEPKKL 687 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 +K+ D Q+S+ L+ + + +L ++ + +K + +T +++ + L Sbjct: 688 NPEKISDFQMSIYRQLLQ-------NRYQNISLAFVNILEKGEKQQVTLLEERNA---LL 737 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + + +L + + F++ + E+ + E Sbjct: 738 AEHIIDLKQ--------TKSFVAEKCDDLQKCTYCEFALMCGRGE 774 Score = 46.5 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 42/159 (26%), Gaps = 27/159 (16%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 PT RA++ + G LP + + + + + + +QR+ Sbjct: 6 IYPTSRALRTVSQSLKNSDG----FLPTLMRMDEFEKRAVLVEERTQAD------PLQRI 55 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 L L L + + L + + E ++ L Sbjct: 56 LFLKE------------ASRFDSFETLKVDRDLVRFFSKSDALFKFFEELSAEHVDYDTL 103 Query: 170 HALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 ++ + L+ + + E L + Sbjct: 104 VQADAYAEFDKH----LETLEQLQRRYKELLEAKGLTDR 138 >gi|332530635|ref|ZP_08406568.1| exonuclease-like protein [Hylemonella gracilis ATCC 19624] gi|332039918|gb|EGI76311.1| exonuclease-like protein [Hylemonella gracilis ATCC 19624] Length = 915 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 112/698 (16%), Positives = 217/698 (31%), Gaps = 59/698 (8%) Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397 D + A+ +A + +EA A + L + A+ DR Sbjct: 220 DAPASFAPAASASVSDVRGGAHAVHDAIDAADEAQRAAACVLRHLQAGRAPVAVAVIDRA 279 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 L RRV+ L R G+ + G LSTT + L + L A + A+ +KH A Sbjct: 280 LTRRVRAMLARHGVQMRDETGWKLSTTRAGAQLMTALRACARDAGSDAVLDWLKHAPACD 339 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + L A R L ++ + + + Sbjct: 340 ETALRALEAALRRQPRRLWRHA-----AAGLAEASPAQLEGNVLQALLRDTEGWRAALTG 394 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + + L+ + L++ ++ + + + ++ L + P + Sbjct: 395 GRSTRTLQEWLEALHALLSLCGIWDTLIQDEAGLEVSRALHYALDETGQATPQLPPQALW 454 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + E+ + R ++ KP +L + Sbjct: 455 AR------------------RRWSLSEFTGWVDRALESAIFKPAYPLREQAVLLPLAQML 496 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMANGTR 695 +F ++L G +E P + ++ L L T E + QAA D ++ Sbjct: 497 GRDFGAIVLPGCDERSLPAAPEPTGPWTAAQRAALGLPTREVLRAAQQAAWDEAVSRACP 556 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRGQCYLDWT-------- 742 I R + P +AS + +L + + + ++ Sbjct: 557 IDILWRGHDSDGEPLLASPLVLQLQWQARGEQRAQAGWVSAREADDVTAAQAMVLVGSAP 616 Query: 743 -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 R + R P +P S S + L + PY +A R+L L Sbjct: 617 DPRERRAVVPAPIAKPAPRLAPPWNETLRPTRLSASAYQDLRHCPYRFHALRLLGLREAE 676 Query: 798 HFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + + D+ D G H ++ ++ + + ++ Sbjct: 677 EMEGELDKRDFGLWLHAVLQTFHVQDTPNGASREDRAARLDAAAQAVAREQRLADDEFLP 736 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 W + + HE + PA+ A++ + L G DR+D SG Sbjct: 737 YQAAWPRVREGYLDWLVTHEAE---GWRFALGEHPAEQALDI--VTLFGRLDRVDR-ASG 790 Query: 912 FVDITDYKTGDNPKKETA--QKLIDPQLSLEAAAL--KAGSFSQIDCRKVANLFYIRLKQ 967 + + DYKT + L D QL+ AA L G + +V ++ +R Sbjct: 791 ALMVMDYKTEAEQTTRNRVKEALEDTQLAFYAALLSASEGEGAAFLPSQVVSVANLRAAY 850 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + T ++ ++ L+ L+ VT L G Sbjct: 851 VNVGEGETRLHEQPEIEQARVALLQGLVHDVTRLAEGA 888 >gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length = 1091 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 110/1093 (10%), Positives = 267/1093 (24%), Gaps = 135/1093 (12%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 ++ V P A T+ + N V T++A Sbjct: 22 EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLGLTFTRKAAGQLL 81 Query: 58 QELRSEFIEITGKKSTILPII------KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111 + +RS + G TI P + F LL + L PV RLL Sbjct: 82 RRVRSRLARLAGAGLTI-PAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLG 140 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 L + + + L ++ S A + LA L++ + E +L Sbjct: 141 ETELWQLAFRVVCEHPAAL--DTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDR 198 Query: 172 LKNEKYGMWWLL-------AADFLK---------IASKYWTERLVELNASSPVGYQIALM 215 L + + L R+ E + Sbjct: 199 LVHTLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHHRMREERVMDFGMQMASAA 258 Query: 216 RAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPT 268 R + H + +++ + A +S++ +G + D Sbjct: 259 RLASTHPAVGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFGGGADDGLALTAVGDPIQSI 318 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 W + + +++ S +L E + S + RS+ + Sbjct: 319 YGWRGASATNLPRFTTDFPLSDGTPAPTLELRTSWRNPPEVLHLANAASVDARRRSVEVR 378 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK- 387 P+ L + + + A +A L + Sbjct: 379 SLQPRPNAEPGSVRAALLSDVEAERDWV--------------ADQVAHRWHGGLAASGTA 424 Query: 388 -KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +A++ A + L+R G+ +++ L + + ++L A Sbjct: 425 PTAAVLVRRNADAAPMADALSRRGVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAA 484 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++ P + G + + + + + + + Sbjct: 485 VRVLTGPRWRLGARDLTALWRRAVTLVD-----TGPSASDAVSATAEIVAKLEPDADDAC 539 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + +T S+ +++ + + Sbjct: 540 LADAVCDPGPAAAYSPTGYARIVALGRELTALRAHLSSPLPDLVAEIRRTLGIDAEVRAA 599 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 E + ++ G+ + + ++D ++ +G S Sbjct: 600 --QPISAGWSGTEHLDRFGDVVAEFASRGTPTASGLLAYLDTAEQVENGLAPAEVTVSSD 657 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL------------ 674 + IL ++ L + + + L V+P + +L+ L Sbjct: 658 RVQILTVHAAKGLEWQIVAVPHLVGRVFPSTASARTWLTDAADLPPLLRGDCATVSAHGV 717 Query: 675 ------------------------KTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + + + H + + Sbjct: 718 PVLDTSDVSDRKGLSDKIAAHKSSLDQRRTDEERRLLYVAITRAEHTLLVSGHHWGATES 777 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 P S +L + + D T +P Sbjct: 778 KPRGPSTFLTEIRDVIDASTEDGRPCGSIDVWADAPADGETNPIRGRVVEAVWPVDPVAG 837 Query: 768 RTYSFSEIKQLIN------DPYAVYARRILKLDFIPHF--KKDPDRTDRGTLFHNIITEL 819 R L+ P + + ++D ++ Sbjct: 838 RRGPVDRGAHLVAEVLSGECPEVGSDDDHGWVADVDALLAERDLAAQRAVPSLPAQLSVS 897 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI--------SHSFLEHE 871 + ++ + H +++ + + L W + + ++ + Sbjct: 898 AMVELGRDPEAVAHRLQRRLPRRPDSHALLGTAFHEWVQRYFQAEKLFDLDDLPGAVDAD 957 Query: 872 EKIQ---------------SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916 + + ++ I V +P M + + G D I G + Sbjct: 958 RQDRGELDELQTAFAVSPWAARTPIDVEVPFDMMLAGR--IVRGRIDAIFADGDGSFTVV 1015 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 D+KTG+ P QL++ A + ++ + Sbjct: 1016 DWKTGEMPTDPEVLAHNALQLAVYRLAWAR---LHGCPTSAVRAAFHYVRSGRTVMPDAL 1072 Query: 977 DKKKYSADELSEK 989 ++ L+++ Sbjct: 1073 PEEDDLIALLADR 1085 >gi|111657165|ref|ZP_01407944.1| hypothetical protein SpneT_02001618 [Streptococcus pneumoniae TIGR4] gi|116516958|ref|YP_816489.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae D39] gi|116077534|gb|ABJ55254.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae D39] Length = 1099 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 118 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 169 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 170 QLAQESQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 227 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 228 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 266 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 267 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 326 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 327 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 386 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 387 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 424 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + S+ Sbjct: 425 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 484 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 485 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 543 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 544 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 603 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 604 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 663 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 664 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 723 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 724 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 782 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 841 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 842 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 900 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 901 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 951 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 952 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 983 >gi|288573980|ref|ZP_06392337.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569721|gb|EFC91278.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 958 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 141/1031 (13%), Positives = 268/1031 (25%), Gaps = 158/1031 (15%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106 V VP + L+ +E G I D+ E +A + + Sbjct: 29 VVYLVPGSSDREWLKDILLEE-GTFGREAFRIWRWDDLYREACSATGSVPM---VQIDPP 84 Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW 166 L L L+ + D++ +S + L + + + EE Sbjct: 85 DHWLALHHLVRESLTRWSDLMPPGTGQSS------------FVQTLGETVRELIREEVPP 132 Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG---YQIALMRAEAEHLM 223 E L + L + + E L +L+ E Sbjct: 133 EALSEALYPDGEDHPEEPSWLLANLYRRYLELLRSRGLMDSAAVSTEIASLIEENPEAAK 192 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + I++ G + ++ + + N + + Sbjct: 193 WLRRWRIVLVGFYSFTHSQLGMVRAM--------------------VRNGADVTLLSPEA 232 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 P + + + R + + S Sbjct: 233 GLEGEYGAPSQLEGADVLRSKPSQSGCFVISG----GAARGEMETVVRDLALWSSGEGPL 288 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 + P + V + LR ++ A+ L V+ Sbjct: 289 ADKGNFPGWGEVGMTVDFRSTS-------LASEVLRRYAVPFRRSEGRTVAETILWDTVR 341 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 + A L+ P G E Sbjct: 342 RA----------------------------WDCYRDGWQPEPTAELLCLPWFFHGLSE-- 371 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + + DL S + + Sbjct: 372 --------RWLVMASPRGLKGWRDLASSEESLAEPLERVVAFAEAIGKGGT--------- 414 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + +L + LVT + + + D +L L+ + E Sbjct: 415 AEELLTAMKRLVTSSPDWREVLSSR-LEDRPELDEVVLELGSAVQELDRKLDRIAELQAD 473 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L +++ G + ++ + V P +S T+ + G L + Sbjct: 474 LGDPGKAVLKGGDAMAF--------LSVWAESAVVWPGASRSGTMTLYGGTPPVLAHHRI 525 Query: 644 LILGGLNEGVWPKNTAK-------------NPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 G+ WP A+ + L +L + Q F Sbjct: 526 WAFCGVTAKNWPGPMAESPLLGDCHKELLHDMDLRGSRLDRTHLPLMSEKRAQREVLFRR 585 Query: 691 ANGTRH--LIYTRSLREN-NIPTIASRWL-----QRLLVLGGTD--FFDNLKKRGQCYLD 740 +I + + P S ++ R + G + N+ R + Sbjct: 586 ILACGDDLVILSYPSLDGAGRPLPESPFIGGALRDRWIDELGKEVRSVGNVLPRWEEPAL 645 Query: 741 WTRKLDYTTKQPHYKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 ++ K RP P P+ A+ R+ S I P+ +I+ L+ Sbjct: 646 LPSEVQEPPKGIVTARPDRRLPSDPIMAEIRSIRLSSIDSFAACPFMFRCSQIVGLEPPE 705 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK----ENLPPHID 853 D GT H + ++ K ++ L I S E+ P + Sbjct: 706 RPGY--DGRLAGTAAHRLWRDVWKAYEVDRDADLASLACDIWPSVLEEVYRGLLYSPDLK 763 Query: 854 IIWRHLFHKI---SHSFLEHEEKIQSSIEKI-FVNIPAKMAIESIGIHLTGFADRIDLLK 909 L I + E E+ ++ F+ + +E G+ TG ADRIDLL Sbjct: 764 RRGDALLKDILKTADYLSELEDIGLKNMRVASFLEWELPV-LELDGVPFTGIADRIDLLD 822 Query: 910 SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKF 969 G V I DYK+G + K + QL+ A +L+ + +V +I Q+ Sbjct: 823 DGTVLIWDYKSGGSSKYD-----RSLQLACYARSLELSDSLPFEMSRVGGYGFI--CQRD 875 Query: 970 KIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHLRLSE------KSNIQ 1021 + D+ LS +S L + + F ++ L ++ Sbjct: 876 QKVVGAADEDLREFMGLSPRSRVALDTRLKDASDVIEAAAFAANSGLFPPNYDNDQACRN 935 Query: 1022 SEYDHLARVAE 1032 Y L R E Sbjct: 936 CPYSGLCRRGE 946 >gi|325105547|ref|YP_004275201.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145] gi|324974395|gb|ADY53379.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145] Length = 986 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 81/467 (17%), Positives = 146/467 (31%), Gaps = 52/467 (11%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 +I + + V + L ++G LESR LNF ++L GLN+G+ PK T N F+ Sbjct: 524 LIQKTLQSIAVPLSGSPLNGLQVMGLLESRNLNFKHVVLLGLNDGIVPKTTIGNSFIPDS 583 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLVLGGT 725 ++ L E +A+ F + SL + + SR+L++L G Sbjct: 584 LRRVYGLPVLENQDAISAYMFYRLIQRAEKVSVVYNSLTDESNSGEPSRFLKQLEYESG- 642 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + Q K + T + + K RT S S + I +P Sbjct: 643 ---WDFNYFHQEMNVEVEKSEATEIEKTDEIIKVLNDFSTGRRTLSASALTTYIANPIDF 699 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT-------PEINHLMKQI 838 + I + + + D G++ H + + +N E + + Sbjct: 700 FFNYIAGIKEPEEVHEVVEANDLGSILHGTMEDFYNILKFENPNITRERIAEKRKDILTL 759 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLE-------HEEKIQSSIEKIFVNIPAKMA- 890 I ++F K + + +E + ++ + I + + Sbjct: 760 IKANFNKVMYDNAERQTNFSGMQLVVLAIVEEYCNIILNYDEKCTPFTIIHMEEAMVVPY 819 Query: 891 ------IESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID--------- 934 IH+ G DR+DL G I DYKTG + ++ + Sbjct: 820 TFTDANGNERTIHIKGIIDRVDLTGDGITRIVDYKTGSDKLSYHSIEESFNTHGKSLNKA 879 Query: 935 -PQLSLEAAALKAGSFSQI-----------DCRKVANLFYIRL-KQKFKIDCITNDKKKY 981 Q + + + V Y ++ K + + Sbjct: 880 LVQTLFYTYVFEQAKNLKFVEPNLYVLKIMNKEGVLFQSYRKVDDGKGGTKRMKLNLSNE 939 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E E L L + + L + PF S Y L Sbjct: 940 FLMEEKEIFLNELNKKLAELFDKNVPFRVSENPLNYQ--YSRYTTLM 984 Score = 81.5 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 47/370 (12%), Positives = 96/370 (25%), Gaps = 57/370 (15%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 PF +E+ L+ L I KR L+ EI K Sbjct: 3 PFLKEVAEDLVAQFG-----------DKLQHCAIVFNNKRPSAYLQKYLAEIYQ-KPFWS 50 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P ++ ++ + + Y + L RL K + D+ P Sbjct: 51 PTFFTIQELFAKSTHYKIADFY---------SQFFTLYRLYNQLLIKENLGLLDMAQFFP 101 Query: 136 -----LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL-------- 182 LS N + A L ++ I ++++ L +++ +W Sbjct: 102 IAKIILSDFSQIDNDLVDANKLYHELEDIALINQQFDFLSPEQHQFLSQFWTSYSEGKHK 161 Query: 183 -------LAADFLKIASKYWTERLVELNASSPVGYQIALMR---AEAEHLMKGTKGPIII 232 + + + E L + + L + L + +G +I Sbjct: 162 RQQENFIKMWRRMPVLYHAFHEDLAKQKLQTMGRAYRNLAEGKQDNPDFLQEFQEGKLIF 221 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G A +++ + A D + Sbjct: 222 VGFNALTKAESKVFKRWQEQ-DLAKFYFDTDAYYLNDPLQEAGLFLRKNIDQI------- 273 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 L++ LD +R +K + + + L D + Sbjct: 274 -----GLINALDSQRTFIKERPKQVDVYKVQGHNVQAKILNDIVRDEYAQLAANKNYGDT 328 Query: 353 QKCFSDVALI 362 +D +L+ Sbjct: 329 AIVLADESLL 338 >gi|149006189|ref|ZP_01829901.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP18-BS74] gi|147761966|gb|EDK68928.1| ATP-dependent exonuclease RexB [Streptococcus pneumoniae SP18-BS74] gi|332075085|gb|EGI85556.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae GA17545] Length = 1091 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPIQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|81299965|ref|YP_400173.1| hypothetical protein Synpcc7942_1156 [Synechococcus elongatus PCC 7942] gi|81168846|gb|ABB57186.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 865 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 92/595 (15%), Positives = 187/595 (31%), Gaps = 64/595 (10%) Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544 L + D + + P S L+ P L ++T+ + Sbjct: 288 RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQTSLATE 347 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602 ++ V L+ + + ++ L+ L ++ + + Sbjct: 348 FSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +W +LI + P + + + + GLNEGVWP A + Sbjct: 408 QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466 Query: 663 FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716 + + L L TA + QA + A ++ + +N + S +L Sbjct: 467 LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526 Query: 717 QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765 +++ + + + L + +D H + + Sbjct: 527 EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586 Query: 766 ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 R S + I QL PY A ++L L DPD GTL H Sbjct: 587 NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646 Query: 816 ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHK-------ISHS 866 + L + + P+ L+ + +H K+ D+ + + Sbjct: 647 LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLLER 705 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 L E I V + + + + G DRID +G +++ DYK G +K Sbjct: 706 LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762 Query: 927 ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + +D QL+L + G+ + + VA + Y+ +++ + Sbjct: 763 VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L ++ L+ + +R + ++ L R +E ++E D Sbjct: 814 -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861 >gi|332523689|ref|ZP_08399941.1| ATP-dependent nuclease subunit B [Streptococcus porcinus str. Jelinkova 176] gi|332314953|gb|EGJ27938.1| ATP-dependent nuclease subunit B [Streptococcus porcinus str. Jelinkova 176] Length = 1078 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 116/953 (12%), Positives = 265/953 (27%), Gaps = 124/953 (13%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + L D+ ++ DL +E DF+ I + Sbjct: 112 LAFILQLIDLYKELKAANIAVTDLEMEDSE-------KKNDFISIFLAVEDLMVNYQLEE 164 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + V + + A + + ++ +I+ G T A L++ + + ++ L Sbjct: 165 TSVLDYFSQVVASGQIDEQLSQTVLIVDGFTRFSTEEANLVAQLDTKCHQVVIGTYLSQK 224 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +I T+ V + + Sbjct: 225 AYSKSFTEGNIYQASIDFFRELSQTYH-----------------------VKAQYTKSQI 261 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + +SF + D E++ + + + ++ N+++E +A ++R L E Sbjct: 262 IYPESFRNLTKLLEEHFDFSESESQLSSQDKNSFQIWQSLNQKDEIEHVAKSIRQKLYEG 321 Query: 386 KK--KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + ++ D + +L ++ I +S + +L Sbjct: 322 YRYKDILVLLGDLESYQLQICQLFDKYEIPYYFGKAEAMSHHPLVQFIDALERIYRYNWR 381 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 I +L+K L +L DI + ++ Sbjct: 382 NEDILSLLKTGLFGHFED----------FDLDQFEAYVQFADINGSRKFAKTFFVNPLDS 431 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + D + L + I + L K ++ N ++ ++ + Sbjct: 432 RERRKF-------DLDAINRLREVIYSPLEALYRQKQQTGASFMNRLLTFLNQVELPTKL 484 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + E K +S+ + N +I + + Sbjct: 485 EQLSYAQNENEQEKDLEVWKVFTSILEQFYHIFKDELINLEHAFKLIKTGMQTAHYRAVP 544 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + I + + + G+ +PK T K ++ ++ N K Sbjct: 545 ATLDVVTIKSYDLVQPHSKAIVYAIGMTSAHFPKVTFKKSLINDQERALTNQKLPSFQRF 604 Query: 683 QAA--------HDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN- 730 + A H ++ + L+ + + N + S ++ LL G Sbjct: 605 EVASHETTKKNHFMALSLFNSANQKLVLSVPTQLNEVSVEISPYISLLLAFGIPLVEKGK 664 Query: 731 ------------------------------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + + R L K+ P+ Sbjct: 665 SRFSALESDIGNYKSLLSQVIELNTSQMELSPEEENFWTVMLRYLKGRLKKEDLVFPQTK 724 Query: 761 ---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 E +P S S + ++ Y + + +L L PD Sbjct: 725 KHLQTKTLSKEVIQTRFPEEKPIHLSNSALTVFYDNQYKYFLQYVLGLQETESIH--PDA 782 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFHKI 863 GT H + ++ + + ++ F+ HL +I Sbjct: 783 RQHGTYLHRVFERVMADASDLAFDNKVKRAIKQTNQEASFKYFYQEDAQGRYSLHLLEEI 842 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD- 922 + + + + Q+ + + ++ I+ + + G DRID L V I DYK+ Sbjct: 843 AKATADIFKAHQN-VHVLAQEEKFQLPIQDK-LIINGTIDRIDQLADQSVGIVDYKSSAN 900 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 ++ QL +ALK + + + Y+ +++ + Sbjct: 901 VFDLSLFFNGLNSQLPTYLSALKR-RYQNHNP--IFGAMYLHMQEPKLDLATYQELDSK- 956 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS--EYDHLARVAEW 1033 L + K L + E+ ++ +N + E L EW Sbjct: 957 ---LLKDHYKELT-YKGIFMESEKEHLASGAYHITNNTFTEEEVALLLAYNEW 1005 >gi|254510778|ref|ZP_05122845.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11] gi|221534489|gb|EEE37477.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11] Length = 910 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 111/995 (11%), Positives = 266/995 (26%), Gaps = 108/995 (10%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTIL-PIIKSLGDV--VEEKFTADLLLSYNLNPPVSN 105 + T++A +EL + G + P+ ++G + + K + + + Sbjct: 2 VSTFTEKAAKELVTRITSRLGGIENLGNPLDLTVGTLHSIFLKLLEEFRAYTEIQKNYTV 61 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + + + L +D+ P ++ A L ++ I E Sbjct: 62 LDQFDQQYFLFQQASE-----FRDIQGIEDALGLRGPQSSWRFAGALMTWLNKISEEGIT 116 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----AEH 221 E L A + A + + L E N Q+ ++R Sbjct: 117 AEQLLASDTPEMSAS--------GEAYQTYQRLLSEYNYLDFSTIQVEMLRLLDNPDVCK 168 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 ++G ++I + +++ +A V+ D + + ++ Sbjct: 169 QIQGRFDYLMIDEYQDTNTIQEKIVLKLAEGHRNLCVV--GDDDQALYRFRGASIRNILE 226 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK-SFLPPDTSDMR 340 + Q L K + R ++ + P + Sbjct: 227 FPTRFPAGECKQVRLTKNYRSEPPIIDFYNRWMKTTDWAEDDKSFRFDKTIEPASGTATA 286 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA-DRNLA 399 + + + + ++D L+ + R + I + + + + L + Sbjct: 287 HPSVFKVAGDDRADNWADETLVFLQSLRSQGI---------IKDWNQVAFLFRSVRNPKV 337 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 +L GI I ++ I L+ + Sbjct: 338 VAFANDLEAAGIPIYAPRSNMFFERTEVRLM---------------IGALL---FLFPQY 379 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 +R L++ A + I LK ++ + W + ++ L Sbjct: 380 GSIRQTREGMNLQVWAFYDACLAEFINHLK---------SGDDPQIKAWAAGKAKNHLSL 430 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + P + D + KL L + Sbjct: 431 SE-------NTNYPFSGLFYDLMQFPTFSRFLDEGIAHSGVRDSRPARNLSKLSRLLNKY 483 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 E + + + + I+ + + S + + +S+ L Sbjct: 484 EYLYNVIVIRPDRLERDILGLFNFFFRFLWDGGIEEYEDESEYAPSGCVSFMTIHQSKGL 543 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 F +I+G L+ + T L + + E DF T + Sbjct: 544 EFPIVIVGSLDAVPRKQYTDMEVMLEQEFG---GREPFEPMDRIKTFDFWRLFYT---AF 597 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 +R+ + + R + +F + + + D T PH Sbjct: 598 SRAQNMLVLTCQENTPSGRGQRHVPSAYFRPVYDALKPWRDL-------TFDPHTIDLAE 650 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 ++ + S++ P + L + + GTL H I ++ Sbjct: 651 VKEVDIKQSYSFTSDVLVFEGCPQQYRLLKDLNFAPVRT-----NAILFGTLVHQTIEDI 705 Query: 820 IKK-RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQS 876 K + T + D ++ + + + + S+++ E Sbjct: 706 HKAVLRGEETKVTTDQITSWFDLNYANLTKKERVYLAEPVLKIAKRHVTSYVDRERAHWH 765 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK---ETAQKLI 933 + V +++ LTG D + G +I D+K+ P Sbjct: 766 RLRDAEVE----LSLLKEDYILTGTVDLV-QTDDGSYEIIDFKSEKKPDLIDEADRLSRY 820 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 QL + A L+ +V+ + ++ +T ++ + K Sbjct: 821 RRQLQIYAHLLEEK-----REVEVSRMTLYYTGEEAGNPRVTFPRETTDVEGTIAKV--- 872 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ + E+ ++ Sbjct: 873 -DSVIHDIVEKNYGLSERP---ERLCKNCDFQAFC 903 >gi|15901016|ref|NP_345620.1| exonuclease RexB [Streptococcus pneumoniae TIGR4] gi|15903083|ref|NP_358633.1| second subunit of major exonuclease [Streptococcus pneumoniae R6] gi|81449676|sp|Q8DPR7|ADDB_STRR6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|81531935|sp|Q97QQ0|ADDB_STRPN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|251764802|sp|Q04KF9|ADDB_STRP2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|14972628|gb|AAK75260.1| exonuclease RexB [Streptococcus pneumoniae TIGR4] gi|15458658|gb|AAK99843.1| Second subunit of major exonuclease [Streptococcus pneumoniae R6] Length = 1091 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 253/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQESQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAEKLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQA 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQC-------------YLDWTRK-----------------------LDYT 748 + +G + + ++ LD Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDQQ 715 Query: 749 TKQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLHPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|289705136|ref|ZP_06501540.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus luteus SK58] gi|289558164|gb|EFD51451.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus luteus SK58] Length = 1146 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 115/1012 (11%), Positives = 251/1012 (24%), Gaps = 102/1012 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82 + L+P L + P++ A LR G+ + + +++ Sbjct: 66 VAVEYAARRIEAGLDPESL---LLLAPSRDAAARLRDALTRRLAAAGRGTRAVTPVRTWS 122 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPIS 141 + + RLL A + L L + Sbjct: 123 SYAFDLLRR--ARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPDWPADVAP 180 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 A + + +++D + + L L W AA L+ + E Sbjct: 181 AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPEWEAAAVLLQDYRDRIDLGMAE 240 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 A G A +R E + + ++ V + + Sbjct: 241 --AFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERDRLAVL-VVEDLHEATPAVHD 297 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 L + +T +LD + + + Sbjct: 298 LLSVLGRGRDVLLTASPDTTVEGFRGARPDLLARYPGVLDPDPVPGAAPLASPDGRVRVL 357 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPN------IQKCFSDVALIEADNEREEAISIA 375 R + R + V E + Sbjct: 358 TRGHRMRAEVQDAYLRVARRVRQRTAGVERTRTETVPADGDGAVRAHVVPTRAHEDQLVL 417 Query: 376 IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILT 431 + E+ + ++ + + L G+ + AG+ L + L Sbjct: 418 ERVLRVHHEDGVPLDRILVVARSGSRVAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLL 477 Query: 432 SLLNAIFKLN-DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 +LL+A L D A V P G A + + + Sbjct: 478 TLLDAAGALAEDPEAGVEDVLDPDEVVGLLTGRYGMASALHVRRLRQDLLAAERGRGGRR 537 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 +A + + + + + +L D + P + +T + Sbjct: 538 TSDALLAAALLDPSLAGPEHERHRALRRVHWMLRDGLEAARAPSASPETVLWALWSASGR 597 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 ++ + D + L + + ++ + + + + Sbjct: 598 AERWRSLALRPAEHANDRRESRRADADLDAVVALFKVAERFVDQFPG-ASPESFAVYMES 656 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + +T+ + E + + + +DT+I+ GL EGVWP + L Sbjct: 657 QDLPVDTLARRAESGDAVHVRTPAAAAGQEWDTVIVVGLQEGVWPNTRLRGQLLGATDLV 716 Query: 671 DLNLKTAE--------------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPT------ 710 DL A+ + ++ R ++ T + P+ Sbjct: 717 DLVTLPADAPWPTDHRTRLREVRQDELRMLAAAVSRARRQVVVTAVRAPDEGPSDFLDLV 776 Query: 711 ----------IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ--------- 751 + +RL + L R + L+ + D Sbjct: 777 DPPERLPAEARDAAGARRLTAVPDPITAPALVGRLRRVLEAGDEADAADGVTPRAAAAAG 836 Query: 752 --------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 E + S S ++ + +P + Sbjct: 837 LAVLAEDGVTVADPRRWWGLLPLSTEAALVDPEREVVALSPSRVETALRNPLDWVLYHV- 895 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 GTL H++ + E+ + ++ Sbjct: 896 -----GANAGGTLAQSVGTLVHSVAEHHPEGVPEDVRAELERRLPELG-------LPEGW 943 Query: 852 IDIIWRHLFHKISHSFLE-HEEKIQSSIEKIFVNIPA--KMAIESIGIHLTGFADRIDLL 908 I I + +++ + + + + + +TG DR++ Sbjct: 944 ITEIEHDRARGLVDAYIGYWSIARAAGRRPVAQEVRLLADLTWGGTTVRITGVVDRLEAD 1003 Query: 909 KSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G I D KTG P + PQL+ A++AG Q+ + Sbjct: 1004 AQGRPFIADLKTGRSAPTGAEMAR--QPQLAAYQVAVRAGGLEQVRDDPATD 1053 >gi|169833300|ref|YP_001694550.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae Hungary19A-6] gi|251764623|sp|B1IBR5|ADDB_STRPI RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|168995802|gb|ACA36414.1| ATP-dependent nuclease subunit B [Streptococcus pneumoniae Hungary19A-6] Length = 1091 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 119/932 (12%), Positives = 252/932 (27%), Gaps = 147/932 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 L + L ++ + + + DL L +E + + Y + Sbjct: 110 QDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRAD---LLLIFEKVTAYLNQ-----G 161 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + L+ A + I +I G T R++ + G ++ G Sbjct: 162 QLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHG--KGVEIVIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 S +S + Q S+ K L L K + Sbjct: 220 A-------------YASKKAYTSPFSEGNLYQASV-KFLHHLASK-------YQTPAQDC 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ SF + D E + +K ++ + ++EE +A ++R Sbjct: 259 SQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L E K L+ + +K ++ I + ++ + + S+L Sbjct: 319 LHENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILAL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + DI + + Sbjct: 379 KRYRFRQEDLINLLRTDL----------------------YTDLSQSDIDAFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTK 555 +S + + E +L IL + L + + S+ Sbjct: 417 INGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEG 476 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 LQ++ E K + + + + + +++ ++ + Sbjct: 477 AVTKQLQDLTTTLEAVEQE-RQTEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSL 535 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + T+ + L D + GL + PK + L+ + +LN Sbjct: 536 SQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQT 595 Query: 676 TAEKYIGQAA-------HDFEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 T E A + + M + + L + N + S +LQ L+ G Sbjct: 596 TEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESESKESAYLQELIHFGF 655 Query: 725 TDFFDNLKKRGQCYLD--------------------------------WTRKLDYTTKQP 752 + +G D +R + Sbjct: 656 RRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQ 715 Query: 753 HYKRPKPF---------------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P Q S S + + + Y+ + R +L L Sbjct: 716 GLENPAIPTSPSSKTLTKDTLQALYPAKQEFYLSTSGLTEFYLNEYSYFLRYVLGLQ--E 773 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDII 855 + PD G H I ++ + + Q + FE Sbjct: 774 ELRLRPDARSHGNFLHRIFERALQLPNEDSFDQRLEQAIQETSQEREFEAIYQESLEAQF 833 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------MAIE-SIGIHLTGFADRIDLL 908 + + ++ + H + +IE I + ++ + + G DRID L Sbjct: 834 TKEVLLDVARTT-GHILRHNPAIETIKEEANFGGKDQAFIQLDNGRSVFVRGKVDRIDRL 892 Query: 909 -KSGFVDITDYKTGDNPKKETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +G + + DYK+ Q ++ QL AALK Y Sbjct: 893 KANGAIGVVDYKS----SLTQFQFPHFFNGLNSQLPTYLAALKREGEQNF-----FGAMY 943 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + + + + L Sbjct: 944 LEMAEPVQSLMAVKSLAGAVVEASKSMKYQGL 975 >gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] Length = 1101 Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 131/1082 (12%), Positives = 260/1082 (24%), Gaps = 181/1082 (16%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N V T++A Sbjct: 21 DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITG-------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110 + +RS + G ++ P + + F LL + L P+ RLL Sbjct: 81 RRVRSRLARLAGTTVGVAVGEAAGAPTVST-----YHAFAGSLLRDHGLLLPIEPDTRLL 135 Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170 L + + +L + + A + L LA+ + +L Sbjct: 136 SETELWQLAFEVVNGYRGELC--TQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELE 193 Query: 171 ALKNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIAL 214 L + L ER+ A Sbjct: 194 RLVHALPAGPNQRDSGPNQWLLRMLVTQTERAELVPLLDALHERMRAAKVMDFGMQMAAA 253 Query: 215 MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267 R + ++ +++ + + +S + +G + D Sbjct: 254 ARLAATCPQVGGELRSRYRVVLLDEYQDTGHSQRIALSALFGGGVDDGLALTAVGDPIQS 313 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 W + + S++ S + +L + +S E RS+ + Sbjct: 314 IYGWRGASATNLPRFSTDFALSDGAPAPVLELRTSWRNPPRALHLANAISAEPRRRSVAV 373 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387 PD L + + +D ++ +R A ++ Sbjct: 374 HALRSRPDAPAGTVRCALLADVQAERDWIAD--QLQGHYQRAAADGVS----------PP 421 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 +A++ A + L GI +++ L + + L ++L + A Sbjct: 422 TAAVLVRRNADAAPIADALVARGIPVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAM 481 Query: 448 TLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++ P + G + R AL G S + + A + P Sbjct: 482 RVLTGPRWRLGGSDVAALWRRAVALVGGPQVGASVSPGAVAAAAGPDTDTACLADAICDP 541 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK--------------NSTCGNLSISD 552 S E L + L + + + Sbjct: 542 GPADWYSSAGYERIGALAAELNALRGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWA 601 Query: 553 WTKLTVTCLQNVCLDEHRKL----PNLWFEEEGKTLSSLFSKIIETGSCIK--------- 599 + V R L + L + E + + Sbjct: 602 GAEHLDAFADVVADYAERTAISAGSALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARD 661 Query: 600 ---------ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 A +EW + + +SS L G L L + Sbjct: 662 GVQVLTVHAAKGLEWQVVAVAHLSAGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGI 721 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + LS + + + + + + Sbjct: 722 PVLDTSAVTNRKQLSDTISAHREQLDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGL 781 Query: 708 IPTIASRWL-------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--- 757 P S +L +R G + R + LD + P Sbjct: 782 KPRGPSDFLCELKDIIERSAAAGDPCGTVDQWDRAPVAGERNPLLDDVVEAVWPTDPLAT 841 Query: 758 --------------------------------------------------KPFPPLEAQP 767 PP A P Sbjct: 842 RRGDVERGARLVAEAISADAGVEAPAGGAAVADIEGWTADVDALLAERARAVGPPTRALP 901 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 S S + +L DP R + +L P G +FH + + + + Sbjct: 902 NQLSVSGLVELARDPVGARQRLVHRLPTRPDPHAQL-----GNIFHTWVQQFYGAELLFD 956 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 ++ + + +F + I V +P Sbjct: 957 LGDLPGAADSDVGQV---------------EDLAPLQEAFAGSPWAAR---TPIAVEVPF 998 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALK 945 +M + + G D + G + D+KTG+ P+ A + QL++ A A Sbjct: 999 EMPVGDT--VVRGRIDAVFEDPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRMAWAAL 1056 Query: 946 AG 947 G Sbjct: 1057 RG 1058 >gi|227497413|ref|ZP_03927645.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] gi|226833089|gb|EEH65472.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] Length = 1156 Score = 148 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 126/1083 (11%), Positives = 290/1083 (26%), Gaps = 165/1083 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 I PT+ ++LR ++ + + +++ G + L + P Sbjct: 68 DALILAPTRGRAEQLRERAAQLLAGQGSGAVRVRTPGSYAFMVLSTSLSSRPDPLP---- 123 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 A ++L+ + + + L+P LP + L +++ Sbjct: 124 -------APVLLVGAEEDAALAQMLHPAHWQPLPPEAVTSRAFRSELRNLLARAGELGVG 176 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEAEH- 221 +L L E W A L+ R + Q A Sbjct: 177 AAELAELAEELDVEIWRQAVPLLRAWDAQGRPSSSRRSQTRKMDSARIQDRAREALERWN 236 Query: 222 -----LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAIWNT 273 + +I+ AT+RL++ +A + + V+ D + + Sbjct: 237 ADGVQVPPPVPDLVIVDDYQDCTAATSRLLARLARPDSSGHRSQVVVLGDPDVAVETFRG 296 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 T + + L E V+ + ++ + + + Sbjct: 297 GTPSLL----VEAEDRSGLAATRMTLRTRYRGGAELVRVWEDQADRVPVTGSPVHRHPRL 352 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSA 390 + E + + V I A + +E +A +R + + A Sbjct: 353 AEQEVSGGCQPSETCTVVAGERTAAVTAIVASSACQETAHVARVMRSEHVLHGTAWDQMA 412 Query: 391 LITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIF--------KLN 441 +I A+ V EL R G+ + S+ + L ++ +T + + Sbjct: 413 VIVRSAGAAQAVARELRRRGVPLSASSPAVLLRAEPAAAAVTDVARSALAGELGQDDAPA 472 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 A+ L+ PL + R + ++ L + + Sbjct: 473 QREAVLRLLTSPLIGLSVLDLRRLRRRLRTAFPQQEADEVLVRTACSLQLARALLEQLRQ 532 Query: 502 NTHVPHWQ-----SRLSEEDKELAVLLVDHILQCITPLVTYK-TNKNSTCGNLSISDWTK 555 + V + +R+ E + + D Q + + S + Sbjct: 533 DPLVSQARSLERAARIVTEVRAVVQACHDARPQGDEGTGQGRVDAEELLWAAWQASGCAE 592 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGSCIKANAIEWIDIITRL 612 E + + K E + A+ ++ + Sbjct: 593 QWRQVSLGGDTGSGEDGVLAEAAEHDLDVVTALFKRAEVWAERHPGQDAAVFLSELAGEV 652 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF--------- 663 + ++V P + + + +L + ++ + + G+N WP ++ Sbjct: 653 LPSDSVAPTGVRPAGVSVLTPAAAAGRQWEVVAVTGVNRDQWPDLRLRDSLTRAGLLVEA 712 Query: 664 LSRVMQSDLNLKTAEKYIGQAAH----------DFEMANGTRHLIYTRS----------- 702 ++ + + + + + +A + + Sbjct: 713 VTDRLPREPGGRRSAQMDRVSARAQVRADERRMLLAALTRATRRLVVTACQDEEHAPSGF 772 Query: 703 -----------LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD---------WT 742 + + + + S + L + G RG Sbjct: 773 FLEVARSAGVQVSDEDGQVLTSPDVGELTLRGLVAELRRATVRGHLPTATEQERQQGRQA 832 Query: 743 RKLDYTTKQPHYKRPKPFPPL------------EAQPRTYSFSEIKQLINDPYAVYARRI 790 L + Q + P + + S S++ L P + +R Sbjct: 833 AALLASVAQAGIGQADPSSWPHGVATSATALVADGERVRVSPSDVDNLSTCPLRWFLQRH 892 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 ++ G + H I ++ + + +++++ + + P Sbjct: 893 GGDTGTSGQQR------LGNVVHAIAERAQREGLRG------ESLHELLEAQMPELSDPG 940 Query: 851 H-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI--------------- 894 I+ + R H I + + + V + ++ Sbjct: 941 TWIEQLARQRAHDIIDRLDSYLASVPGQ---VLVEKRIDVELDLPLPPSEDTDDEPGRDG 997 Query: 895 --GIHLTGFADRI----------------DLLKSG---FVDITDYKTGDNPKKETAQKLI 933 G+ L G DRI D L +G V + D KTG P + A+ Sbjct: 998 VIGVRLAGRIDRIEMVEALDEMQSGTQELDQLPAGQGRRVRVMDLKTGRRPAGDVARNA- 1056 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 QL+ AL+A + VA + +I + E Sbjct: 1057 --QLATYRMALEALGYEVSGAGLVALGESADRNGQTRIYPPGAALAASPDAQTGEDWASQ 1114 Query: 994 LIE 996 L+ Sbjct: 1115 LVA 1117 >gi|326317370|ref|YP_004235042.1| exonuclease-like protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374206|gb|ADX46475.1| exonuclease-like protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 913 Score = 148 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 111/817 (13%), Positives = 215/817 (26%), Gaps = 72/817 (8%) Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L+ +P D + + + + L Sbjct: 144 PLLDAACQLAPAVAAVPPADREAWAGRVRPLLPPAAEGAALRYESAVARIALEWALATRH 203 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI-----------LENKIPNI 352 R+ + + + P Sbjct: 204 ATDVLFEPRVRASAPVLVVLDGFQPDPLAHALCALWGADRACVLPLCPAPGAGGPDGPRA 263 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 DVAL A + +EA A + + E + AL DR L RR+ L G+ Sbjct: 264 AFAAGDVALHAAADAEDEAQRAAACVLRHVAEGRTPVALAAIDRALTRRISALLAGRGVG 323 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + G LSTT + + + L A A+ +KH A + R Sbjct: 324 VHDENGWTLSTTRAGAQVMAALRACMAHASGDAVLDWLKHVPAADAEALRQAERWLRRTG 383 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + R A + + A+ +++ Sbjct: 384 MGDWP--------------AAVRSAGLAAGPAQDTTGAEGLDVPGPCALEGWRTLVRRTE 429 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 G L+ + + D + L+ Sbjct: 430 AWRAAMQAPRDLPGWLAALRALLQATGQRERLQEDAAGLRVLAELRLD---LAQEGEWRG 486 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLN 650 S E++ +++ +P+ + + ++ + F L+ G + Sbjct: 487 LDVSGRPMALAEFVHWADEVLEAGRFRPEFGGDGTPDAVVVPLPQMLARPFAALVAAGCD 546 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIP 709 E +R + L L + + A H+ + R E P Sbjct: 547 EKRLQAAPEPPGAWTREQREILGLPMRKDLEAAQRAAWAHALSVGHVDVLWRIGDEGGEP 606 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 +AS + L GG + ++ T RP P Sbjct: 607 LLASPLVLALQAEGGRRAGIDPRE------------LRTVAPSPVPRPLPRGD-ALPLAR 653 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---K 826 S S L + PY +A R+L L + D+ D G H ++ + + + Sbjct: 654 VSSSAYSDLRHCPYRFFALRLLGLQESDELGAEVDKRDFGNWLHAVLQRFHEGLRDAPVE 713 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +T L+ ++ + L + + + + +L ++ + F Sbjct: 714 DTATRRQLLDAAAEATTRAQRLSAGEFLPFAAGWPALREGYLRWLAGHEAGGAR-FREAE 772 Query: 887 AKMAIESIGIHLTGFADRIDLLKSG------FVDITDYKT-GDNPKKETAQKL-IDPQLS 938 + + L G DR+D ++ V + DYKT G++ + D QL+ Sbjct: 773 RRCVQPLGPLELIGTLDRVDAVRGQAPGEPPTVMVIDYKTEGESATRRRIAAGTEDTQLA 832 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 AA L Y+ + ++ + + D+L E L + I Sbjct: 833 FYAALL---------GDDTLRALYVNVGERGETRSFEQEDVVALRDQLVEGLLHDFARIA 883 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWRE 1035 + L R W + Sbjct: 884 EGAPLPALGEGA-------VCDYCAARGLCRKDFWSD 913 >gi|293607026|ref|ZP_06689370.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814623|gb|EFF73760.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 889 Score = 148 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 92/854 (10%), Positives = 213/854 (24%), Gaps = 48/854 (5%) Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 L L R + + +PA AI Sbjct: 41 LELAGLLRQERQVSELPRILPLSAWLAESANELAFEADDDVPAYRLDSFATQLVWTEAIR 100 Query: 259 LPGLDCHIPT--AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + + + + + + + ++ + Sbjct: 101 AEEAERVLLDASQAARLSMDADQLMDEWDLHVPSGADTDEYRGFARWRVRYRQTLAGIDA 160 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + G + V+ + + + EA R Sbjct: 161 EDANQGYARVLRALEEGRLPTPAHLVLAGFTDVSPRFHRL--LRAFEAQGTRVSQWRDEQ 218 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + A I + + + + + S A Sbjct: 219 RIETVARRFEAADEGAEWRAAAAWAAGQLQAHPHGRFAIVSPQLEAESPFARRILSQALA 278 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 V PL ++ L+ + E +G L + Sbjct: 279 GRDGAPAHVFNVAVGRPLNEWPMARAALAWLRALAECAGGKGCGVDVLGAALLAGHCAGD 338 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDW 553 ++ + R + I + W Sbjct: 339 VRERARLAAIDARWRRQAIQHVSPHDWKKLLADIPTLAQAWNQAFEIWTQGGRQATCDVW 398 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 L + L ++ ++ G +L S + + + ++++ + Sbjct: 399 MLRMKAALTALGFPGEGVLDSVAYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLQSVA 458 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + +P+ + ++ L +LG LE+ +D + L GL + V P + NP L + Sbjct: 459 RSASFQPQRDPTARLDVLGLLEAEGGYWDGVWLLGLTDDVLPASPKPNPLLPLAVLRQAK 518 Query: 674 LK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 T E+ A + +I + S + S + Sbjct: 519 APRATPEREREWAEGMYAALCRCAPDIIVSHSHMDGERELRPSPLIAG------------ 566 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + Q + + P + +P + R Sbjct: 567 --TALTDWTPPVADCVAALPQESLEDNQGPPLAPGNRGGGGLDVLDTQARNPLWAFVRHR 624 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-------EINHLMKQIIDSHF 843 L + + RG H + + ++ T + L++Q + Sbjct: 625 LGGRELSPYADSATVNVRGQFLHKALELVWGMMPDQETLHEVMATGRLAALLEQAVAQAA 684 Query: 844 EKE--NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 ++E + P + + + ++L+ E + V + ++ + L Sbjct: 685 DEELKDYAPALKALECQRARAVLAAWLDTE-ARRLPFAVAQVEKNHQWQRGALNLKL--R 741 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKK----ETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 DRID L G I DYKTG P K + + ++ QL A+ L + ++ + Sbjct: 742 LDRIDSLADGRNVIIDYKTGVAPAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLVL 801 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPFI 1009 A + ++ + D A + + + + L + Sbjct: 802 AQIHARQVAAQGLADEDLGVPGVTLAADSKFFQGLSWPEIRQRWRVAIEALADEYVAGVA 861 Query: 1010 SHLRLSEKSNIQSE 1023 S++ + Sbjct: 862 SNVAYRRDDLKYCD 875 Score = 41.8 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 94/897 (10%), Positives = 212/897 (23%), Gaps = 108/897 (12%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99 L A + R + L E ++ + LP I L + E + + Sbjct: 21 LAAADTLVLTVNNRLSRRLTLELAGLLRQERQVSELPRILPLSAWLAESANELAFEADDD 80 Query: 100 NPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID 157 P + + L I E + + + A L+ + ++D Sbjct: 81 VPAYRLDSFATQLVWTEAIR--------------AEEAERVLLDASQAARLSMDADQLMD 126 Query: 158 IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 + + W + + + L ++A ++RA Sbjct: 127 E---WDLHVPSGADTDEYRGFARWRV----------RYRQTLAGIDAEDANQGYARVLRA 173 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE- 276 E T +++AG T P RL+ A + Sbjct: 174 LEEG-RLPTPAHLVLAGFTDVSPRFHRLLRAFEAQGTRVSQWRDEQRIETVARRFEAADE 232 Query: 277 ---KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + HP A + L+ + +R+ +S + GR + F Sbjct: 233 GAEWRAAAAWAAGQLQAHPHGRFAIVSPQLEAESPFARRI--LSQALAGRDGAPAHVFNV 290 Query: 334 PDTSDMRNTDILENKIPNIQKCFS-------DVALIEAD-----------NEREEAISIA 375 + + + ++ V ++ A A A Sbjct: 291 AVGRPLNEWPMARAALAWLRALAECAGGKGCGVDVLGAALLAGHCAGDVRERARLAAIDA 350 Query: 376 IALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISA---------------- 417 R ++ L+ LA+ + + Sbjct: 351 RWRRQAIQHVSPHDWKKLLADIPTLAQAWNQAFEIWTQGGRQATCDVWMLRMKAALTALG 410 Query: 418 --GIPLSTTLHSSILTSLLNA---------IFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 G + ++ ++ +L +A +A L++ F + Sbjct: 411 FPGEGVLDSVAYQVMGALGDALGSFSALAPAAGRLGGVAAVNLLQSVARSASFQPQRDPT 470 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 A+ + + + L A+ K N +P R ++ + + Sbjct: 471 ARLDVLGLLEAEGGYWDGVWLLGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREW 530 Query: 527 ILQCITPLVTYKTN----KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + + G + + T L + + L E Sbjct: 531 AEGMYAALCRCAPDIIVSHSHMDGERELRPSPLIAGTALTDWTPPVADCVAALPQESLED 590 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + G + + + + + ++ + + L Sbjct: 591 NQGPPLAPGNRGGGGLDVLDTQARNPLWAFVRHRLGGRELSPYADSATVNVRGQFLHKAL 650 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 L+ G + + L+ +++ + E+ A + R + Sbjct: 651 ELVWGMMPDQETLHEVMATGRLAALLEQAVAQAADEELKDY-APALKALECQRARAVLAA 709 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 + + Q NLK R + P P Sbjct: 710 WLDTEARRLPFAVAQVEKNHQWQRGALNLKLRLDRIDSLADGRNVIIDYKTGVAPAKPEP 769 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 ++ R + YA G + I + Sbjct: 770 DWSRSRPVNV---------QLPFYAS---------VLADAAGGEVAGLVLAQIHARQVAA 811 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + + + DS F + P I WR ++ ++ + Sbjct: 812 QGLADEDLGVPGVTLAADSKFFQGLSWPEIRQRWRVAIEALADEYVAGVASNVAYRR 868 >gi|291544541|emb|CBL17650.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. 18P13] Length = 1115 Score = 148 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 109/983 (11%), Positives = 237/983 (24%), Gaps = 149/983 (15%) Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 E G + S + F S ++ + + L + I + Sbjct: 47 LYEALGPTAFNAIQSLSFTSLARALFQQYGGRSGEYA---DDLTKTILLYQSIRALSDSS 103 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 D + P + A I + E L + + Sbjct: 104 AFSHFDRQAKKPAFQDAA-----------AKAITELRRGSISPEALLE-QTARLEGRLRD 151 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 A L + + +L E + A + + + Sbjct: 152 KAADLAVLYGDYDRQLREKGYKDSLTDITEAAALCAGN-EHFKGALLFLDEFESFTGDQM 210 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + + + + P+ + D Sbjct: 211 EFLDVLFAQAKELWITLRTED---------------------------PEAPAYSVFDAT 243 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + L + + + IL + + + E Sbjct: 244 NATYRRLLALAQKHGTGHEVLLCKEPFRFRYPDLAHISRSILRPVHTQLPTA-EHIHVFE 302 Query: 364 ADNEREEAISIAIALRMSLDENKK---KSALITADRNLARRVK-LELTRFGINIDISAGI 419 A N EA +R + E A++T + R+ I + I Sbjct: 303 AKNCYTEADCACAHIRKLVREQGVRYADIAIVTHQLEEYAGILESACIRYSIPFHLDRKI 362 Query: 420 PLSTTLHSSILTSLLNAIFK-LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 T +++ +L I + + K L + V Sbjct: 363 SCMHTALLQLMSGVLELISEKRPRTETLLRYAKTRLLGISCERTARLESYCYTWNVDG-- 420 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + + L E E + L + + T Sbjct: 421 --------------MMWLEPFTAGLEENSDLEALRLELVEPIMQLREACRG--QNVRTLC 464 Query: 539 TNKNSTCGNLSISD-WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 N +++ + + + C E L LW +L+ + + Sbjct: 465 KNLYQFLCRMNVPKNISGIAQDYQEAGCTAEASALKALWG-----SLADVLDALCNVLGD 519 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + D++ L+ + + + + +RL + + G++EG +P Sbjct: 520 AVLPTSRFRDLMQALLSRISYSTPPQSLDAVLVASAETARLNAPKYVFVLGVSEGFFPSQ 579 Query: 658 TAKNPFLSRVMQSDLNLK------TAEKYIGQAAH-DFEMANGTRH-LIYTRSLRENNIP 709 + + L + + E+ IG ++ + L L + Sbjct: 580 VHSTGLFTDADKQQLEARELFLSRSTEQLIGDERLIAYKTLSSASDGLYLFYPLSDAAGS 639 Query: 710 TI-ASRWLQRLLVL------------------------------------GGTDFFDNLK 732 + S +Q++ + Sbjct: 640 SRSPSALIQQIRDMFDAPMLRIAEQEDPCMYAATPRAAYDLTVQGFYRHTTEGASIREAL 699 Query: 733 KRGQCYLDWTRKLDYTTKQPH--YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 K Y LD P + L S + ++ P+ Y Sbjct: 700 KSDPVYGPRLASLDTLALTPEHRIAHTERIRELFGDRLYLSATRLETYNLCPFQYYMNYG 759 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK----------QIID 840 L + KK+ + + G L H + +L+ +K + + + Q ++ Sbjct: 760 LGIRA--DQKKEINPLETGNLVHYCLEQLLTGCPDKESFDALTEAEVTARVEQYAAQYLE 817 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK--IQSSIEKIFVNIPAKMAIESIGIHL 898 + H ++ QS+ + + + SI + L Sbjct: 818 QAMGGSFGKDARFASNYRRITGSIPPLIRHLQQELSQSAFRPVSMELKLSRQDGSIPVTL 877 Query: 899 T----------GFADRIDLLKSGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAAL 944 T G DR+DL + + + DYKTG +D Q+ L ++ Sbjct: 878 TTPSGIQLILGGKIDRVDLYEENGTRYIRVIDYKTGKKEFDLGKLLYGVDMQMLLYLFSI 937 Query: 945 KAGSFSQIDCRKVANLFYIRLKQ 967 + A + Y+ Sbjct: 938 TE-PEGKYGGAVPAGVLYVPAGG 959 >gi|23957810|gb|AAN40823.1| unknown [Synechococcus elongatus PCC 7942] Length = 865 Score = 148 bits (372), Expect = 7e-33, Method: Composition-based stats. Identities = 93/595 (15%), Positives = 187/595 (31%), Gaps = 64/595 (10%) Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544 L + D + + P S L+ P LV ++T+ Sbjct: 288 RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLVAWQTSLAPE 347 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602 ++ V L+ + + ++ L+ L ++ + + Sbjct: 348 FSPWPLAASRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +W +LI + P + + + + GLNEGVWP A + Sbjct: 408 QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466 Query: 663 FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716 + + L L TA + QA + A ++ + +N + S +L Sbjct: 467 LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526 Query: 717 QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765 +++ + + + L + +D H + + Sbjct: 527 EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586 Query: 766 ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 R S + I QL PY A ++L L DPD GTL H Sbjct: 587 NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646 Query: 816 ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHK-------ISHS 866 + L + + P+ L+ + +H K+ D+ + + Sbjct: 647 LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLLER 705 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 L E I V + + + + G DRID +G +++ DYK G +K Sbjct: 706 LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762 Query: 927 ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + +D QL+L + G+ + + VA + Y+ +++ + Sbjct: 763 VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L ++ L+ + +R + ++ L R +E ++E D Sbjct: 814 -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861 >gi|238060936|ref|ZP_04605645.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149] gi|237882747|gb|EEP71575.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149] Length = 1095 Score = 148 bits (372), Expect = 7e-33, Method: Composition-based stats. Identities = 109/1043 (10%), Positives = 216/1043 (20%), Gaps = 127/1043 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVEEKFTADLLLSYNL-NP 101 V + +R +LR + P++++ Sbjct: 9 RVLVLTFGRRQATDLRRRIEARVAGDGHRVLREPLVRTFPAYAYGLLRRAAAERGEPSPR 68 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 ++ ++ L + L+ + + D P A L D++ Sbjct: 69 LLTGPEQDLIIRELLDVVGEE-----PDDDPVGWPEELRPALRTRAFAAQLRDLLMRAAE 123 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---ASSPVGYQIAL---- 214 +L L W AA FL+ R V A P A Sbjct: 124 RGVGPVELARLGERLGRADWPAAARFLREYVAVLALRDVSNRGSIAYDPAELVRAATGLL 183 Query: 215 -MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 E + + + + PA L++ +A G ++ D T + Sbjct: 184 LDDPELLEAERRRLAHVYVDELADTDPAQLDLLAVLAG--GGKSLVAFADPDSATYAFRG 241 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR---EDVKRLGNVSNEMYGRSMVISKS 330 ++ + L +RL + Sbjct: 242 TDPAGVAAFPHRFRTASGAPAAQVVLTTSYRAGPGLIAATRRLAGRLRGPAAHRRLCPLP 301 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA 390 PP T +R ++ + + L++ A+ + R + Sbjct: 302 DAPPGTVQVRTFRSATSEAAWLAQALRAAHLLDGVPWSRMAVLVRSTARQLPSLRRALHT 361 Query: 391 LITADRNLARRVKLELTRFGINIDIS------------------------AGIPLSTTLH 426 + L L + + PL+ Sbjct: 362 AGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPARLDEESAVALLHSPLGGADPLAERRL 421 Query: 427 SSILT--------------SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 L +++A+ + I P A Sbjct: 422 RQGLRAIALAAGDRRPSGELIVDALRDPEELSGIDRRWAEPAQAVAGLLAIAREAAQRPG 481 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL-----------AV 521 A +D L I + T R E + A Sbjct: 482 ATAEDVLWAVWDASGLAERWAGAITLGRAATGEHETARRWRAEAADRDLDAVLVLFDAAA 541 Query: 522 LLVDHILQCITP--LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 D + T L +D + + L + + Sbjct: 542 RFADRLPGARTEVFLDHVLGQDLPADTLAPTADRGEAVRLLTAHAAKGLEWDLVAVAGVQ 601 Query: 580 EGKTLSSLFS-------------KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 EG ++G +A I + Sbjct: 602 EGVWPDLRLRGSLLGSERLVDVLAGRDSGDGGRAVLIGQTSALLDEERRLFHVAVTRARR 661 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY------ 680 L + + + D D E Sbjct: 662 RLLVSAVASASVGGDDHEEQPSRFLYELDPTRPPGKGDGAPGHGDDPDGGPEGTPDGSSG 721 Query: 681 ----------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 A + G R R L ++ Sbjct: 722 RGPAEGGGPGTAGQAEGGDPGAGAPVEGGVEPGRGTLPVAGPPRALTLPALVAELRTAVA 781 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ-------------PRTYSFSEIKQ 777 P + P + S ++ Sbjct: 782 DPATPYHRRSAAAAELARLAAAGVPGAHPDDWWGLRGLSDDRPLVDEGEPVRVTPSGMES 841 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + R G L H + + + L++ Sbjct: 842 ALRCSLRWLLERHGGSGPASA------AQGVGNLVHAA-----AMLAEDASADRSALLEY 890 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 + E + R + L + I ++ + Sbjct: 891 VAARFDAIELAARWMVGPERERAEAMVDKLLRWLAGNPRRLLAIEHEFAVRLDDPHRPVE 950 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 LTG DR+++ G + + D KTG + + PQL AA++AG+F++ + Sbjct: 951 LTGRVDRLEVDADGRLVVVDLKTGKSTVVTEREIGEHPQLGAYQAAVEAGAFAEFGD-ES 1009 Query: 958 ANLFYIRLKQKFKIDCITNDKKK 980 ++L + + Sbjct: 1010 GGAALVQLGTGARDAREQSQPAA 1032 >gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] Length = 1096 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 127/1085 (11%), Positives = 274/1085 (25%), Gaps = 128/1085 (11%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 ++ V P A T+ + N V T++A Sbjct: 21 EEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 + +RS + G + P + F LL Y L PV RL Sbjct: 81 RRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVS-TYHAFAGSLLRDYGLLLPVEPDTRL 139 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEEKKWE 167 L L + + + L + + S +W LA++L D + + E Sbjct: 140 LSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAEHLVDT-SQLRETHLELE 198 Query: 168 DLHALKN------EKYGMWWLLAA-------DFLKIASKYWTERLVELNASSPVGYQIAL 214 L ++ WL L + ER+ + + Sbjct: 199 RLVHALPAGPYQRDRGPSQWLRRLSGTQSERAELVPLLEALDERMRAVKVMDFGMQMASA 258 Query: 215 MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267 R + ++G +++ + A +S + +G + D Sbjct: 259 ARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFGGGVDDGLALTAVGDPIQS 318 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 W + + +++ S + +L ++ +S E RS+ + Sbjct: 319 IYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTLRVANAISAEARRRSVAV 378 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK 387 PD L + ++ +D I+A R A ++ Sbjct: 379 HALCPRPDAPPGTVRCALLPDMVAEREWIAD--HIDAHYRRARADGVS----------PP 426 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 +A++ A + L GI +++ L + + L ++L + A Sbjct: 427 TAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAELVAMLRLVADPTAGAAAM 486 Query: 448 TLVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++ P + G + AL G + + + + + A Sbjct: 487 RVLTGPRWRLGARDLAALWQRARALGGAGTAGGPATAEAIASAADPRNVEADAVCLADAI 546 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + V Sbjct: 547 ADPGPAEGYSAAGYARIAALAAELSALRAHLDHPLGDLVAEVRRVMDLDCEVRAAAAAGW 606 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L G + + S A + ++D+ + +G P Sbjct: 607 AGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDVAESVENGLPAAPLAVARD 666 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV------------------- 667 + +L ++ L + + + L+ GV+P TAK +L+ Sbjct: 667 RVQVLTVHSAKGLEWQLVAVAHLSGGVFPSTTAKTTWLTDAAELPPLLRGDRARPGALGI 726 Query: 668 -----------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENN 707 + + + + + Sbjct: 727 PVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVTRAEDTLLVSGHHWAATGI 786 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 P S +L + + +P Sbjct: 787 KPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWAPAPADGERNPLRDNAVEAVWPADPLAS 846 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---------GTLFHNIITE 818 R L+ A+ A + + D D + ++ Sbjct: 847 RRGEVERGAALVR--QAMAAEPGDPGADVEGWAADVDALLVERARVTGPPPQVLPGQLSV 904 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF------------------ 860 + ++ ++ + S E L + W F Sbjct: 905 SSLVGLARDPARAAQRLRHRLPSRPEPHALLGNAFHAWVQKFYGAECLFELGDLPGAADS 964 Query: 861 -----HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 +++ E ++ + V +P +M I + G D + G + Sbjct: 965 DVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVRGRIDAVFAESDGGATV 1022 Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCI 974 D+KTG P A + QL++ A + +++ V F Y+R + + + Sbjct: 1023 VDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRTAFHYVRARTTVVPEAL 1080 Query: 975 TNDKK 979 + Sbjct: 1081 PTSDQ 1085 >gi|167631018|ref|YP_001681517.1| ATP-dependent nuclease subunit b [Heliobacterium modesticaldum Ice1] gi|251764590|sp|B0TDI1|ADDB_HELMI RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|167593758|gb|ABZ85506.1| ATP-dependent nuclease subunit b [Heliobacterium modesticaldum Ice1] Length = 1224 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 86/847 (10%), Positives = 205/847 (24%), Gaps = 90/847 (10%) Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 P+ ++ + + L L+ +++L + + + L A +D +T Sbjct: 86 PIGDLGKRMILRNLLEKHKDELRLFHRSAGQPGFADALAGALSELKLYNIDATSLDRCQT 145 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 E + L + L + + L+ Sbjct: 146 EVI---------ERQGAGLLADKLHDLALLYGALKTFLE--GKYTDPDDYLHLLAQRIPG 194 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + + G G P +++ + + V LD + Sbjct: 195 SVMLRDAEVWVDGFAGFTPQELSVLAALMSACRRVNVALCLDPTELDEPCDLDDPFFRTR 254 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + Q L +L I E L + R L Sbjct: 255 ET---------QAKLLQLAFDRGIVIEKALHLVPAPGQSAPRFQHPELQHL--------E 297 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD-RN 397 + P + + A N R E A + + + A++ D + Sbjct: 298 SFYFRRPAPPWLGGTQSLFVCAAANRRSEVEGAAREIIRLCRDQGYRWRDVAVLLRDLES 357 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 ++ + FGI + I + P ++ S L A+ + + + +K L Sbjct: 358 YYDSIESVFSDFGIPLFIDSKRPAPHHPLVELIRSALEAVLRDWAYEPVFRYLKTDLVPL 417 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 E + R ++ + + L L A + + + ++ Sbjct: 418 SRGETDRLENYVLAHGIRGRRWRDREPWLFRRRLTLGEDALSEFSDQELAELAEINGARD 477 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 L + + + +++ + R Sbjct: 478 RARAALASFHKAVVGAKAVRPITAALYQLLVDLKAPEQISCWIAEAEAAG--RIEEAHAH 535 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + LF +I+E+ + + ++ +D + + +F+ SR Sbjct: 536 RQVWAAVIDLFDQIVESLGETPLDLATYAVVMEAGLDSLKLSLIPPELDQVFVGSLDRSR 595 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--------AEKYIGQAAHDFE 689 + G++EGV P + + + T + + H + Sbjct: 596 CPGIRAAFVLGVSEGVLPARPKDDGIFDDKERERIYALTGLELAPGSRRRLFDEEYHIYV 655 Query: 690 MANGTRHL-IYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT----- 742 + L + S + R+ L Sbjct: 656 ALTRASERCYLSYPLADAEGRAQLPSSVIARVRELFPQVTERTWLLEPGSLPTGAGLSGS 715 Query: 743 ------------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 ++ + P S + L Sbjct: 716 AFAGAATAETAAMAQTALAARTTKEAAMSAVERELAEEYIVHPARSLSY--LIPSLREAL 773 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-----LIKKRINKNTPEINH 833 P + + ++ L+H + + ++ Sbjct: 774 ARRPVPLVWWAVYSWLAERPAWRELLARVLSGLWHKNREQDLPKPVSRRLFGDPLRASVS 833 Query: 834 LMKQIID---SHFEKENLPPHIDIIWR-------HLFHKISHSFLEHEEKIQSSIEKIFV 883 +++ + SHF L I+R FH F E + + + Sbjct: 834 RIERFLACPFSHFISHGLRLKERRIFRLAAPDLGEFFHAALKQFGERLRRDRLDWGALPR 893 Query: 884 NIPAKMA 890 ++ Sbjct: 894 EELFRLT 900 >gi|157164411|ref|YP_001466191.1| hypothetical protein CCC13826_0735 [Campylobacter concisus 13826] gi|112801476|gb|EAT98820.1| conserved hypothetical protein [Campylobacter concisus 13826] Length = 781 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 76/453 (16%), Positives = 146/453 (32%), Gaps = 61/453 (13%) Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + L+ ++ + + +I L++ + + ++G LESR + F Sbjct: 384 EKLALELFRMENLCRYFSFSLKQLSEIF--LLNISRLSIDDVGGGKISVMGMLESRGMKF 441 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYT 700 D +I+ N+ P +A FL+ ++ L + + +E + + + Sbjct: 442 DGVIIVDFNDNFIPARSANEMFLNSKVRQKAGLISYVERENLQRFYYESLINNAKKVAIS 501 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + +I SR+L+ + F D + + + + Sbjct: 502 CCVN---EESIPSRFLKNFKTIKDEKFSDE---------AYLKLFLKGEASLNLSDDEII 549 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + SFS + + P Y +I +D + T +G H + E Sbjct: 550 LEHDFFANPLSFSTLNLFLTCPRKYYYTKIAHIDAPKAIASELG-TKQGNSVHGALFEYY 608 Query: 821 KK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSS 877 NT ++ + K+NL P IW H F + +E + ++ Sbjct: 609 TSEFYKQNNTFDL-----AVFKEMLAKQNLTPLEFEIWTHKFKEY----EIYENERLRAG 659 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937 + + G+ + GF DRID+ +G V I DYKTG+ QL Sbjct: 660 FRVLECEKEVQSEF--CGVQIKGFIDRIDVGANGDVLILDYKTGEANVN-------SLQL 710 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + A KV + +Y K + + K + EK Sbjct: 711 AFYEALY---------GGKVRSAYY---TIKNEPSLLCPKKSVEDLNGEIEK-------- 750 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + + + F + EY L R Sbjct: 751 LKAINKTKINF----ERKSGACAFCEYVTLCRR 779 >gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] Length = 1129 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 96/812 (11%), Positives = 208/812 (25%), Gaps = 124/812 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 D L+ + + ER L+A Q L + + + +++ + Sbjct: 330 DLLQYFAARYKERKQLLSAFDFSDLQRNAVCLLDQEDVQKSCHDQFKHMMVDEFQDTNQM 389 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 +++ + D + N S Q+ Sbjct: 390 QMDVLTKINPSYQ----FLVGDGKQSIYRFRGADVTLMNEMSEQARDEKEAQFI------ 439 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 ++ + + N ++ +M P S + + + + + Sbjct: 440 EMNTNYRTTAPVIHAVNGLFAHAMKDVSVHSVPYASLIPAREPEKEDDIRVSLHITKTTE 499 Query: 362 IEADNEREEAISIAIALRM--------------SLDENKKKSALITADRNLARRVKLELT 407 E DN++ IA L N A++ R ++ L+ Sbjct: 500 KEKDNDQVPYHHIADRLLEMVRTGEPTVWNGESWRSPNWGDMAILIPVRTELLALERALS 559 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 GI + G+ +LL + + + + + L++ P+ + Sbjct: 560 DKGIPYHVYGGVGFYERQEILDFVTLLRWLDRPFEELYLFALLRSPMFGLTLDDLMFV-- 617 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + + L Sbjct: 618 ----------------------------------KERFSDELTWFDIVVDKEMASLFAER 643 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 V +T + + L +L+ +E G Sbjct: 644 PVVTDAFVRLRTWLDRWVPFRPVPSLIDHLYELFDQTGL-----KMSLFVQENGMQKVRN 698 Query: 588 FSKIIETGSC-----IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 K+I+ S ++ + I + + + + + I+ S+ L F Sbjct: 699 VEKLIDVMSGWKTNVLEELLQRFDLIQAEVEKEGEAEVEQVAGNVVHIMTVHASKGLEFP 758 Query: 643 TLILGGLNEGVWPKNTA-----------KNPFLSRVMQSDLNLKTAEKYIGQA------- 684 + L L+ ++ + L QA Sbjct: 759 IVCLPQLDRVPQRDKGQVRYDREMGIVLRHEWEEDDGVVKLETPAFALVKEQADLATMAE 818 Query: 685 --AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + A R S WL + + + + Sbjct: 819 NKRLFYVAATRARD----YLWMTGKEQPSTSSWLYEVEEALEEMPELRSHLKIEEDVASH 874 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795 + + + P P + + S +E+ I DP A Y R IL ++ Sbjct: 875 DRWEKDIQTYKVP---PIVPRQPELVPLSVTEMMTFIQDPVAYYERYILGIETSVQHEAK 931 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + D + G+L H + + + + I + + E+++ HI + Sbjct: 932 TKQEDSNIDPSKVGSLAHKVFELVDQGVTLAGS--IEMTLAAHDWTQDERKHYEEHIQRL 989 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 +R + F E + + E I G D+I ++ I Sbjct: 990 FRGVNQHSLQWF----------GEPVANEWAFSFSFEGAEIV--GEIDKIVKNEN-EYHI 1036 Query: 916 TDYKTGDN-PKKETAQKLIDPQLSLEAAALKA 946 D+KT + +PQL+L A A + Sbjct: 1037 IDFKTNQIRRSGAELLRFYEPQLALYAEAYEQ 1068 >gi|313890561|ref|ZP_07824189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN 20026] gi|313121078|gb|EFR44189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN 20026] Length = 1078 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 122/956 (12%), Positives = 279/956 (29%), Gaps = 130/956 (13%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + L D+ ++ +L E DF+ I E L+ Sbjct: 112 LAFILQLIDLYKELKGANIAVTELEMEDPE-------KKNDFISIFLAV--EDLMARYQL 162 Query: 206 SP--VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 Q + + A ++ + ++ +II G T A L++ + ++ L Sbjct: 163 DETSSLEQFSQVIASSQIDDQLSQTVLIIDGFTRFSTEEANLVAQLDAKCRQVVIGTYLS 222 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + +I T+ + + I E ++L + E + Sbjct: 223 PKAYSKNFTEGNIYQASIDFFRELSQTYGVKAQY--VKGQTIYPESFQKLTKLLEEHFDF 280 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 S ++ S + N+++E +A ++R L Sbjct: 281 SESENQLSSQDKESFQIWQSL---------------------NQKDEIEHVAKSIRQKLY 319 Query: 384 ENKK--KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 E + ++ D + +L ++ I +S + +L Sbjct: 320 EGYRYKDILVLLGDLESYQLQIGQLFDKYEIPYYFGKAEAMSHHPLVQFIDALERIYGYN 379 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 I +L+K L L + + ++ + G++ L + R + Sbjct: 380 WRNEDILSLLKTGLFSHVED-FDLDQFEAYVQFADINGSRKFAKPFSLNP-LDHRDRRKF 437 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + + + +EL +T L+ + +S Sbjct: 438 DLEIINRVREVIYSPLRELYSQKEQTGASFLTGLLNFLKQVELPAKLEQLS--------- 488 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +E+ + +L K +++ + + ++I + + Sbjct: 489 ---YSQNENEQEKDLE---VWKVFTTILEQFHHIFKDDIISLEHAFNLIKMGMQAANYRV 542 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + I + + + G+ +PK T K +S ++ N K + Sbjct: 543 VPATLDVVTIKSYDLVQPHSKAFVYAIGMTSAHFPKVTLKKSLISDKERALTNQKLSSFQ 602 Query: 681 IGQAA--------HDFEMAN---GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 + A H ++ + L+ + ++ N + S ++ LL G Sbjct: 603 RFEVASHETTKKNHFMALSLFNSANQELVLSVPMQLNEVSVELSPYISLLLDFGIPLLEK 662 Query: 730 -----------------------NLKKRGQCY-----------------------LDWTR 743 L R L + Sbjct: 663 GKSQFSAMETDIGNYKSLLSQVIELNTRQIELSSEEENFWTVMLRYLKGRLAKEDLVLPQ 722 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + +P + + +P S S + ++ Y + + IL L + P Sbjct: 723 VKKHLQTKPLSQEVIQTRFPQEKPIHLSHSALTVFYDNQYKYFLQYILGLQEMESIH--P 780 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 D GT H + ++ + + + +S F+ HL Sbjct: 781 DARQHGTYLHRVFERVMADATDLAFDDKVKRAIEQTNQESSFKYFYQDDAQGRYSLHLLE 840 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 I+ + + + Q+ + + ++ I+ + + G DRID L V I DYK+ Sbjct: 841 GIAKATADIFKTHQN-VHVLAQEEKFQLPIKDK-LIIKGTIDRIDQLVDQSVGIVDYKSS 898 Query: 922 DNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + ++ QL +ALK + I + Y+ +++ + Sbjct: 899 ASAFDLSLFFNGLNSQLPTYLSALKRHYQNHIP---IFGAMYLHMQE----PTLDLASYP 951 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD---HLARVAEW 1033 +L + K L + E+ +++ +N +E + LA EW Sbjct: 952 ELDSKLLKDHYKELT-YKGIFMESEKEYLASGAYHITNNTFTEEEVAVLLA-YNEW 1005 >gi|168214038|ref|ZP_02639663.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str. F4969] gi|170714493|gb|EDT26675.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str. F4969] Length = 1158 Score = 146 bits (369), Expect = 2e-32, Method: Composition-based stats. Identities = 128/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D + + + N L L+ I Sbjct: 214 IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + ++ + + + L A+ Sbjct: 263 AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-VEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ V + K +SEE+K+ L D + PL + Sbjct: 432 GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRETIVAPLDEFNKQC 481 Query: 542 NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591 + + + L + + + + E + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLLVL-----G 723 DFE + +I R + S L L++ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYEKISAKIPTLNELMIAIRKKYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G + D K YL W +++Y K Y ++ K + S Sbjct: 722 GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + AL S + + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|307721873|ref|YP_003893013.1| hypothetical protein Saut_1958 [Sulfurimonas autotrophica DSM 16294] gi|306979966|gb|ADN10001.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM 16294] Length = 782 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 139/400 (34%), Gaps = 34/400 (8%) Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + ++I + + T+ + + ++G LE+R ++FD +I+ ++ PK + Sbjct: 384 DMSVKSLMNIFMQRLAARTL--DDVRGGKVTVMGVLETRSVHFDAVIIIDFDDKNVPKRS 441 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQ 717 K+ FL+ ++ +L T H +EM + + E + SR+L+ Sbjct: 442 DKDMFLNTQIRKVASLPTMSDRENLQKHYYEMLMARSQEVAISYVSSEQSSG---SRFLK 498 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 +L + + LD+ L KQ + + + S + +K Sbjct: 499 QLGIQENNLHSE---------LDYAEILFARVKQEPKQESEIVQEYSFKNIELSATRLKT 549 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + Y + I + K P + G + H + E+ + +N +K+ Sbjct: 550 FLTCKRKYYYKYIKYIKNHEIPKDMPQEYEIGNVVHRALKEVYE---KQNYYTDTQKLKR 606 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF-VNIPAKMAIESIGI 896 ID ++ +D + K +F++ E + + K GI Sbjct: 607 DIDKALDEFCGESELDKYLVSMQKKRLEAFVDVEIQRFEQGWHVASTEEYFKA--PYAGI 664 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + G DRID K +++ DYKTG K D QL Sbjct: 665 TIAGQIDRIDK-KENLIEVLDYKTGSYTLNTKNNFTDATDFQLEFYYLLA-------GGL 716 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V + + LK+ + D+K + L L Sbjct: 717 GNVQSCGFYDLKESRIVPESFLDEK---LEILKSHIKDLL 753 Score = 45.7 bits (106), Expect = 0.047, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 28/213 (13%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 TI +P+ RAI+ + + + ++ LP ++ D + + + Sbjct: 5 TIVLPSARAIRH--EQLTQES--QTLFLPNYITMSDFISKLTLVKD------YKFIDEDS 54 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 R+L L D S L + + + + + + E Sbjct: 55 RVLLLLE------------ASDFKDFSALQIERNFFTFTKNSSYIFKFFEELSAE---LY 99 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 D+H L N + L+ K + + E + L + Sbjct: 100 DIHQLCNADVYAEYEEHIAILQELYKRYEKLCDERKLLDRIFL-PKLYEFNEVYAKTHKN 158 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 I + G L+ + + Sbjct: 159 IVIQLDG--HLTNFELELLEKALKFTSITLHFW 189 >gi|56750403|ref|YP_171104.1| hypothetical protein syc0394_c [Synechococcus elongatus PCC 6301] gi|56685362|dbj|BAD78584.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 865 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 92/595 (15%), Positives = 186/595 (31%), Gaps = 64/595 (10%) Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--LVTYKTNKNST 544 L + D + + P S L+ P L ++T+ + Sbjct: 288 RLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQTSLATE 347 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI--IETGSCIKANA 602 ++ V L+ + + ++ L+ L ++ + + Sbjct: 348 FSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLKNLAEPASETLTR 407 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +W +LI + P + + + + GLNEGVWP A + Sbjct: 408 QQWCQEFEQLIR-ISRTPVQPGRGGVQLDRPEQIVGAQIGHVFYLGLNEGVWPAPLASSS 466 Query: 663 FLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLI-YTRSLRENNIPTIASRWL 716 + + L L TA + QA + A ++ + +N + S +L Sbjct: 467 LIDYSDRRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQFSWVRQHDNREQLPSAYL 526 Query: 717 QRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLEA------- 765 +++ + + + L + +D H + + Sbjct: 527 EQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAHSAQQRSQQVQARLQGEAVW 586 Query: 766 ----------QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 R S + I QL PY A ++L L DPD GTL H Sbjct: 587 NGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQTDSERSDDPDAAMTGTLLHKA 646 Query: 816 ITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDIIWRHLFHKIS-------HS 866 + L + + P+ L+ + +H K+ D+ + Sbjct: 647 LELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREG-DLRQHPRWTAFQLSYVNLPER 705 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 L E I V + + + + G DRID +G +++ DYK G +K Sbjct: 706 LLRSPNFRSPDSEIIAVEQSFEGQWQGLPV--RGTIDRIDRTSAG-LELIDYKLGSTTQK 762 Query: 927 ---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + +D QL+L + G+ + + VA + Y+ +++ + Sbjct: 763 VWDTDQKLKLDLQLALYQ---EVGAAAIAPDQPVAQVRYLHMRKAEASQPKPAE------ 813 Query: 984 DELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYD 1038 L ++ L+ + +R + ++ L R +E ++E D Sbjct: 814 -------ATELEQLAARLKQAFEGGHFPIRPHDSYCRYCDFAGLCRHSELKQEVD 861 >gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] Length = 1180 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 104/913 (11%), Positives = 222/913 (24%), Gaps = 81/913 (8%) Query: 80 SLGDVVEEKFTADLLLSYNLNPPVS--NIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + ++ + + + R E L E Sbjct: 247 PIPEFSDDALELIMSIQKGASRAQDFALQLRRFEKVTSQRDREAVLRAAFLKTTGEPKSG 306 Query: 138 LPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + A L + + D E+ + L L + L A + + + Sbjct: 307 SYVGSAAVKKLLPDFEEDFDAAAARVEQGLDRLKEL---RLVRLNLAALTLIDNLLQRYH 363 Query: 197 ERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATARLMS- 247 + + + A ++ + I++ + + P +++ Sbjct: 364 DLKRQRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRM 423 Query: 248 -------TVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHPQ-YSLA 297 V + D + + + S + + Sbjct: 424 LSEEFFSGVGQRNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAEDAELKFERV 483 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNI 352 L + ++ + V + + SD + + Sbjct: 484 SLNFSFRSAPDVLQAVDEVFARPEANRGLAGATVHEAIRSDAPGEVEIWDMLTPEVVEEP 543 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKKKSALITADRNLAR 400 V + A R A IA +R LD + L+ Sbjct: 544 DDWREPVDHLAAPAVR-LADQIAATIRHWLDRGEPIPGQNRRIMPRDIMVLVRKRDQFMP 602 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + L + + + + L++ + L +L + + +D +++A+++K PL + Sbjct: 603 ALSRALKNLSVPVAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPLFGWDDD 662 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLV---LDRIATQKNNTHVPHWQSRLSEEDK 517 + L + V L R + V + +R+ D Sbjct: 663 RLFELAHPRGSGLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYARILSADG 722 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 LL + P ++ + L+ + L Sbjct: 723 ARRKLLAR-----LGPEAGDIIDEFQNYALSAERAGLPGLQAYLETLEAASPEIKRELDQ 777 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + ++ + G+ + L+D + ++ L Sbjct: 778 GRNEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPKLIPFDFSNDS 825 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L +R + L + GTR Sbjct: 826 PSVKGYLWQPNAGYQTGFTTAQIEKLKTRAEEEYRRLLYVGMTRAEDRLIICGYRGTRES 885 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 T + + ++ + N + + R D+ + Sbjct: 886 GETWHRLVEDALATKAETFVHPVLKVAARRYRNTPRGMVDIAEQDRTEDHALPSFPDEYR 945 Query: 758 KPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 +P P PR + S LI P +L RGT H Sbjct: 946 EPIKPEIGLPRPLAPSGASALIEADEEPPLDSFSPVLGPGNGTPAF----ALRRGTAIHM 1001 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ L + + +I P I I + Sbjct: 1002 LLQYLPDVPQDGRETLARDYLGRIAAD------WPETERQIAWQSVRTILDD--PTYAPV 1053 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKL 932 + + V I + + ++G DRI + + V I DYKT P K E Sbjct: 1054 FAEGSRGEVAIMGTIELGGRDHAVSGQIDRISVGED-RVLIIDYKTNRPPPKTIEAVPFA 1112 Query: 933 IDPQLSLEAAALK 945 QL+L L Sbjct: 1113 YRAQLALYRELLA 1125 >gi|307298414|ref|ZP_07578217.1| ATP-dependent nuclease subunit B-like protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915579|gb|EFN45963.1| ATP-dependent nuclease subunit B-like protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 1025 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 118/1072 (11%), Positives = 295/1072 (27%), Gaps = 176/1072 (16%) Query: 52 PTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111 P+ ++ R FI G ++ E F S + V N LE Sbjct: 38 PSGDHVRYFRENFISRVGTIPAS--RFLAMDQFAVEVFRRLNPNSIH----VGNHLMRLE 91 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 + ++ L ++I ++ ++ + + Sbjct: 92 IGDILDQMGKGELADSPVFVEY------------------LLEMIHDVKENR-GFDRIFS 132 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 ++E L+ R N + + E + + + Sbjct: 133 TEDEAVS--------VLESIYNELDSRFSRRNIFDTFDAYTRIEEHKDELINEEFGDTLF 184 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + G PA T+ + + ++++ I I + Sbjct: 185 LDGFHDFSPALKIFFKTIIPTYREVFITITQEPD-KESLFSNIDSILETIDEIAENSTD- 242 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 L+IKR ++ + S + + S Sbjct: 243 -----------LEIKRIFFEKSPSSSGLNGFKEALFS--------------------PGK 271 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLE-LTR 408 +++ V+++ + E ++ ++ S+ + +++++D NL ++ + L Sbjct: 272 VEQNCDSVSVVVYPDIFAEVEGVSRFVKESIISACEPGDISIVSSDFNLYSKLLSDKLNE 331 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK------------ 456 +G+ I L ++L L L I + Sbjct: 332 YGVPHRIEGDEELHSSLSIRRLILPLETAVLGFPPEKIIAMADSGYGGEVDSSFIESAAA 391 Query: 457 ----FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + R ++ + + ++ ++ + + + Sbjct: 392 MSRIIYERPNMWLSLEKRRSSWDERLSRLVDLMKERRNAIISLADDELEMSAAEELDEAI 451 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 D E+ V I + + + + + I+ +L++ E + Sbjct: 452 ERIDSEVVPA-VQRIFRLLDSFRSLRKRDVGNYRKMFITWEKELSLIQSLTGYESEVKDR 510 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + +++ + E+ + L+ + K++ + I Sbjct: 511 EMDAIVRFFEYTLPYLERLLYFMGKSSVSPKEYYRYLMLLLKHDKFPLSRNKANRVEIQS 570 Query: 633 TLESRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + SR + G + + F +L E+ + + Sbjct: 571 LINSRFSKKRMKVFVGFVDGAYPHVEMNPLYSFTQFGDSRPRDLLLDEETHERLNLYLSI 630 Query: 691 ANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---YLDWTRKLD 746 + + ++ + P + S +L+ + G + +K G+ + + Sbjct: 631 STAEESVRFSLPESTIDGEPILPSPYLKNVAESSGCETTREGRKVGRRSGYIPELRASMS 690 Query: 747 YTTKQ------------------PHYKRPKPFPPLEAQPRTYSF---------------- 772 + + P + ++S Sbjct: 691 QSELKISAAKFFLNEKWDLLKSFPPLSNLDTVLSNFRRDFSWSVQNRRRLEEVVGNVFSF 750 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S +K + P++ + ++ LD P + D G +FH+++ + + + Sbjct: 751 SRLKSYHDCPFSFFLSYVVGLDVSPEHVFELTPLDEGNIFHSVLKDFFSGKNRDWQDSLA 810 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE-HEEKIQSS----IEKIFVNIPA 887 +K+ + + + ++ H ++ E K + Sbjct: 811 ENIKRHL------MHDSNIVFRFEFERLSEVLHEYITVREGKRPNFMGDNFIPYAFEKAF 864 Query: 888 KM----AIESIG-IHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + ++ + ++L G DR+D+ + S V + DYK G + QL L + Sbjct: 865 GIGETEPVKLLENLYLRGKIDRVDIDRSSSSVYLIDYKRG--------DSGDERQLLLYS 916 Query: 942 AALKA-----------GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + G F + + V + + + KKK + Sbjct: 917 LVAEKLLEDESLDVAGGVFKTLTGKTVNKAAFRTISSEGGKVWEFAGKKKDNRIVKESDL 976 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE------WREE 1036 LK L E+ + +GE F +S R +E WRE Sbjct: 977 LKWLKEVHEGIYSGE--FTPSFTVSASKCYSC------RFSEIKRSITWREG 1020 >gi|291542613|emb|CBL15723.1| ATP-dependent nuclease, subunit B [Ruminococcus bromii L2-63] Length = 1112 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 106/930 (11%), Positives = 247/930 (26%), Gaps = 134/930 (14%) Query: 150 KNLADII----DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 K+L D++ ++ ++L ++ + + S + LV + Sbjct: 112 KSLVDVMLQTVSDLKKSSVTSDELRSVSMLVDDETLKTKLNETALISDTFDA-LVRQSYI 170 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 P+ L + II G +G +++ ++ LD Sbjct: 171 DPMDDLTRLNDILLNN-NVLRGYTIIFDGFSGFTMQQLKVVRSLIRDCTATYFTLTLDP- 228 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 T+ + S L + + + +L ++ Sbjct: 229 ------------LTDGSEEVFATSQQTYKILKEYAKRDGVDIKAPIKLTDLHRFKNDNLA 276 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 ++ +I I ++ ++ + A + +E +A ++ + E Sbjct: 277 LL-------------EQNIFRPHIEPLEIVPKNICVYNAVDMYDECEYVAGKIKHLVIEK 323 Query: 386 K---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 ++I D R V E L ++ I + ++ S+ + Sbjct: 324 GYLYSDISVICHDTEPYRGVLSEILEKYEIPYFSDEHADIDVKPVIRLVNSIFRCLIYDF 383 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 D + L+K L +F E + V+ KN + Sbjct: 384 DREDVLALLKSGLTEFSVEEISFFENYLFVWNVSGSAFKNKFVQN--------------- 428 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT---V 558 S E L + +++ + +KN + + Sbjct: 429 PKGYSDRFSDYDREVLAKVENLRESVIEPLLLFKENAKDKNGLEISKLFYALLEELKVPD 488 Query: 559 TCLQNVCLDEHRKLPNLWFEEE--GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + E ++ E+ ++ K + ++++ I+ Sbjct: 489 ALRRMYAEFERSYDKSVGAEQIRVWNIFMAVLDKTAAVIGTKAMTVKRYYELLSLQINAM 548 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + I R+ L G +G++P + S L + Sbjct: 549 QLSDIPRTIDCVTITTAQRVRISKQKASFLIGCVDGIFPAIPHTSGIFSPFELKMLAMNE 608 Query: 677 AEKYIGQAAH-------DFEMANGTRH-LIYT-RSLRENNIPTIASRWLQRLLVLGG--- 724 E AAH + L + S S + + + Sbjct: 609 IELGDDFAAHNNLETFMAYSCMTSASEFLSVSFYSSDITGTTYQPSEIVLQCKKVFKNII 668 Query: 725 ----------------------------------TDFFDNLKKRGQCYLDWTRKLDYTTK 750 + + + Y L Sbjct: 669 AYDKFDFDGKKESMYALRPAFDTVADMIGKGKKVPESLLEIFAQNPEYSAKLDSLINAKD 728 Query: 751 QPHYKRPKPFPPLEAQPRTY--SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + +K + + S S++++ ++ + L + + + + Sbjct: 729 KVPFKIFDKKNAEKLFGKNLNISASQLEKFNLCRFSYFCNYGLNVRERQ--RAEINPMQY 786 Query: 809 GTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-----LFHK 862 GT+ H I+ + + ++I+ ++ + + + Sbjct: 787 GTIVHYILERFFGEYTKEEYLSLEEDKFQKIVCAYLAEYAVKYFGEEQLESNSFTYRLKT 846 Query: 863 ISHSFL-----EHEEKIQSSIEKIFVNIPAKMAIE--------SIGIHLTGFADRIDLLK 909 I + + EE QS + I I + G DR+D++ Sbjct: 847 ILDNVMYLMKHIMEELSQSEFFVADCELKIGEDIPSYTIVLPDGHKIAVCGSVDRVDIMP 906 Query: 910 SGF---VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 + I DYKTG K I+ Q+ L +++A + A + Y+ Sbjct: 907 RADITYLRIIDYKTGTKQFKLSDILYGINLQMLLYLHSIEASGCDKYGEIVPAGILYM-- 964 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLI 995 + S D+L ++ K L Sbjct: 965 ---PATVPYISSDSLKSIDKLPDELNKKLK 991 >gi|110798865|ref|YP_694493.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC 13124] gi|122959148|sp|Q0TV47|ADDB_CLOP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|110673512|gb|ABG82499.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC 13124] Length = 1158 Score = 146 bits (367), Expect = 3e-32, Method: Composition-based stats. Identities = 129/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D + + + N L L+ I Sbjct: 214 IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + + ++ + + + L A+ Sbjct: 263 AFNGYINLNEDISYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ V + K +SEEDK+ L D +TPL + Sbjct: 432 GKKWME--EWVNYSSSILKEEE--------ISEEDKQRLERLNDIRENIVTPLDEFNKQC 481 Query: 542 NSTCGNLSISDWT-KLTVTCLQNVCLDEHRKLPNLWFEEEGKT---------LSSLFSKI 591 + + + L + + + + + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYYEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723 DFE + +I R + S L L+ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELMIAIRKNYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G + D K YL W +++Y K Y ++ K + S Sbjct: 722 GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + AL S + + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|259046746|ref|ZP_05737147.1| exonuclease RexB [Granulicatella adiacens ATCC 49175] gi|259036642|gb|EEW37897.1| exonuclease RexB [Granulicatella adiacens ATCC 49175] Length = 1190 Score = 146 bits (367), Expect = 3e-32, Method: Composition-based stats. Identities = 120/966 (12%), Positives = 251/966 (25%), Gaps = 132/966 (13%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L L + A + L+ +++ ++ + ED + I +Y+ Sbjct: 116 LLLFKNEARHKGFLEQLSKVMNEFQSGGIEIEDFSSFFEATNPTENEKRLKEFGIIYRYY 175 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 T L + L A + I I A ++ + Sbjct: 176 TNALK-QDFVHQEESYAQLCSVIAS--KDLSNTFIAIDEMVTLSKAEMEVIEALVGSGAT 232 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 L + N I + L++ ++ + N Sbjct: 233 VEFHATLTTYGVHTAKNEIGDSLFTSNRILLE-------RLSRWINR-GDDLARIIEWEN 284 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + + +L + + E KIP + + +EREE Sbjct: 285 TESIFDEEFKEVEQFWLETNGGLPKVKRTPEQKIP-----LQKITFTKYTDEREEYQETF 339 Query: 376 IALRMSL---DENKKKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILT 431 ++ + + K ++ + L ++ I I + +L Sbjct: 340 AQIKRMVQTGNVRYKDIQILGRNLEENHLFLESLLKQYAIPGFIDLSDSMEHHPIIQVLD 399 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPE--------KYLSRAKNALELVALRGNKNSY 483 +L + I +L++ + + + + + E V L Y Sbjct: 400 ALFAIWQYDWRYADIMSLLRSEYVLWHKDDETSLKDQLQAFRQQLDETETVILANGYEGY 459 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + K + Q+ + A L + + + L +K + S Sbjct: 460 QWTNGKPWSYV---EDSIDEDSKVEQTDKNTRVLLKAEQLRNELTSIL--LPAFKKIEQS 514 Query: 544 TCGNLSISDWTKLTVTC--------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++S +L +T ++V +E E+ L + I Sbjct: 515 TTTKEAVSVLYQLLLTLGVDQSFIYWRDVAAEEGDVETARRQEQVWTEFIRLLDEYIYIF 574 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + ++ ++ + L I G R GL++GV P Sbjct: 575 GEKSFDWETFMMLLHTGFEQTHYNLAPSTLDELTITGMDSVRYTPKKITFAVGLSQGVMP 634 Query: 656 KNTAKNPFLSRVMQS---------DLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLR 704 +N + L+ + T + F T HL + ++ Sbjct: 635 RNIDETGLLTDDERELFSNHLDSGRFLAPTTGQLQSVEPFVFYQLLMSATEHLYLSCAIS 694 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD-----------------WTRKLDY 747 ++ + S ++QRLL + D R K Sbjct: 695 KDGKEQLVSNFIQRLLKHYELEEIDGSFNRQNRLEQGDFVVPYELFTTLLLKMRENKFKE 754 Query: 748 TTKQPHYKRPKPFPPLEAQPRT-------YSFSEIKQLINDP------------------ 782 + + P + S + P Sbjct: 755 KEEIDFLWKLIPHLLKVDATFSANYHALLASVFRLNVASKLPLSLAQELYGNQLNLSTSQ 814 Query: 783 ----YAVYARRIL--KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 Y L L + + + G FH + IK+ + + ++ Sbjct: 815 IETYYKDPFSHFLQYGLRLKERQEFELSPANTGEYFHEFFDQFIKELNARGISLRDLTLE 874 Query: 837 QIID---SHFEKENLPPHIDIIWRHLFHKISHSFL---------EHEEKIQS-SIEKIFV 883 Q + F + P I+ L +++ + + Sbjct: 875 QKLAIEKDIFNRMKDNPKFAILASSRRLNFVQGLLHQTLMQTTNALQKQALALETKPWMT 934 Query: 884 NIPAK------MAIESI---GIHLTGFADRIDLL-KSGFVD--ITDYKTG-DNPKKETAQ 930 + + I IHL G DRIDLL + I DYK+ + Sbjct: 935 EVVFGTSGNYPIHIPIGHNQSIHLRGKIDRIDLLQADNGIFNGIIDYKSSEQKFEIAKLI 994 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRK-VANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + QL + S+ YI + + + K+ + D+ ++ Sbjct: 995 AGVQIQLLTYLKVSEEIIRSEKGVIPTPLEASYIHV-----HNPKFSIKEVPTEDKFMQE 1049 Query: 990 SLKNLI 995 K Sbjct: 1050 WTKAFK 1055 >gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] Length = 1128 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 106/1059 (10%), Positives = 246/1059 (23%), Gaps = 166/1059 (15%) Query: 46 SVTIYVPTKRAIQELRSEF---------------IEITGKKSTI--LPIIKSLGDVVEEK 88 V T++A EL + ++ G ++ + P + + Sbjct: 62 RVLGLTFTRKAAGELATRIRRRLDQLRDRLPQDELDRLGGEAALDGEPAVSTYHSYA--- 118 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 A L + L + RL+ A + ++ D + L Sbjct: 119 --ARLFGDHALRAALEPTMRLISPA-MAWQLAARVVDDYDGAMDGIDWRPDTVVRAVLDL 175 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------WLLAADFLKIASK 193 + LA+ + ED+ + + + L + Sbjct: 176 SGELAEHLR-------TPEDVREIGRRLRAQFDALPGRRGAAKNVLATQEIRERLLPLVE 228 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMST 248 + +E R +H + + +++ + A L+++ Sbjct: 229 AYQRAKIEREVLDYGDQVALAARIARDHPDVGMIERSRYAVVLLDEYQDTSHAQLVLLTS 288 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + G V D W + + + +A + +R Sbjct: 289 LFG--GGHPVTAVGDPCQSIYGWRGAGSGNLTGFPEDFPLAPAVPSRVAAVPPPRPGRRP 346 Query: 309 DVKRLGNVSNEM----YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + + ++ + ++ + ++ V Sbjct: 347 PRHARPAPTATLSISWRNGERILEVAARIQQGLRADTANVPRLRPGEGRRGRGRVECALL 406 Query: 365 DNEREEAISIAIALRMSLDENKK----------------KSALITADRNLARRVKLELTR 408 EA IA +R + + A++ R+ ++ L Sbjct: 407 PTVTAEAEHIAERIRRLRAADPELAPDGLPWDEGPLKYSHIAVLVRRRSQIPPLRKALEE 466 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RA 467 I +++ L T + + L + ++A L+ P + G + R Sbjct: 467 RDIPVEVVGLGGLLTVPEVQDVVATLRVVHDPTAGASLARLLTGPRWRIGPRDLVALGRR 526 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 L R D +L+ V ++ + + L D Sbjct: 527 ARRLASENTRDITPPPDASELRPEPAANAEETDPLRQVVIELTQETGSLVDALDDLGDPS 586 Query: 528 LQCITPLVTYKTNKNSTCGNL-----SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + + D L R + Sbjct: 587 AYSPEGLARLRRLAAELRTLRSQVGLPLPDLVAEVERTLGLDIEVAARSGLDPAGARADL 646 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNF 641 + S + + ++ +S ++ +L ++ L + Sbjct: 647 DAFIETAASFAEESENPTLGAFLAYLKAAESEEFGLPAGRVSESDSVKLLTVHAAKGLEW 706 Query: 642 DTLILGGLN--------------------------------------EGVWPKNTAKNPF 663 +++ GL + N Sbjct: 707 PVVVVPGLCYLPSGSGRPVKGSIFPSPPQQSTRWTDNPRLLPFELRGDYEKGNLPRLNGL 766 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLV 721 + + + + HL+ R P S +L+ + Sbjct: 767 TKADLDRFKDECADRDLREERRLAYVAVTRASHLLIATGHRWGATARPLHPSPFLEEIRQ 826 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ------PHYKRPKPFPPLEAQPRTYSFSEI 775 T + L + P +R R I Sbjct: 827 ACETGAGRVVSWADPPEEGAANPLQAEAEPGRWPATPEGRRYAAIVEGAEMVRDAMVGRI 886 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT-------LFHNIITELIKKRINKNT 828 D A R + + DRG +T ++++ Sbjct: 887 APWAGDDGLTEADRRRMTAWARDVELLLAERDRGRGGDVLQVELPAKLTVSTLVALSRDP 946 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRH--------------------------LFHK 862 E+ +++ + W + + Sbjct: 947 QEVARSIRRPMPRPPAPYARRGTAFHRWLESRWGQQRLLDPDELPGAADEGAADDSMLTE 1006 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + F E E + + + + + + L G D + G ++ D+KTG Sbjct: 1007 LQRRFEESEWASR---RPLDIEVTFETVLGDR--VLRGRMDAVFTAPDGGYEVVDWKTGR 1061 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 P + + QL+ A + + KV+ F Sbjct: 1062 PP-ADEDFRHAAVQLAAYRLAWAD--LAGVPLEKVSAAF 1097 >gi|302874682|ref|YP_003843315.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B] gi|307690705|ref|ZP_07633151.1| ATP-dependent helicase/deoxyribonuclease subunit B [Clostridium cellulovorans 743B] gi|302577539|gb|ADL51551.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B] Length = 1152 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 108/940 (11%), Positives = 245/940 (26%), Gaps = 127/940 (13%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L DI+ ++ + E L L K E + + + + E Sbjct: 116 GFVSILGDIVSELKNYDITTETLKELYSKIEDNKG-LKDKLYDISLIYEKLRAAMEEKYL 174 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 I + + + + + ++ + + Sbjct: 175 DLEDELSILYGKLDEYRDINNAY--VYFDEFSSFTTLQYNIIEKILLKAKVLSISLIHSS 232 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG--NVSNEMYG 322 I S S + + + +DI R+ L + + Sbjct: 233 QY-------IKSNSDGKIESYSNEGDVFSVTSKTINKLIDIARKINSPLEYKEIEYKKIK 285 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 R L + + + ++ + + N E +A + ++ Sbjct: 286 RFNNQELIHLEKNLYAYPHEEY--------EEKTKKINININVNSFNEIEEVAKGILEAV 337 Query: 383 DEN---KKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + A++T + + + + I I + + L S L I Sbjct: 338 RDRDFRYRDIAVVTRNLDSYDEMIKAIFNEYNIPYFIDKKKEIESNKLIVFLKSALEIIS 397 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 K A+ +K L + L + + Sbjct: 398 KNWSEEAVFKYLKSDLTSLSREQVDLLENYALANGIRGKRKWTKETWDY----------D 447 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + + EE EL +V+ +L+ ++ K + Sbjct: 448 FPKELSGGKEKEEILEEINELKAQVVNPLLKLYDISISKAKVKEISKIIFQFLQQVGAFE 507 Query: 559 TCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + + + ++E + + E+ I++ + Sbjct: 508 KIENWIQGFRTEGKQLLANEYSQIWNLIIETLDMLVEVLGDAEMSLEEYEKILSIGFEEN 567 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS------ 670 + + + S+ L + G+N+GV+P++ + L+ ++ Sbjct: 568 KMGLIPATIDQVLVGSVERSKTNGVKILYIIGVNDGVFPRSVSDEGILNDEDRTVLMENG 627 Query: 671 -DLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLRE-NNIPTIASRWLQRLLVL----- 722 L T + +E +I + + + S + RL + Sbjct: 628 ITLASTTRAAAFEEQFLVYETFTAASDEIIISYPIADFEGKALRPSILVSRLKNIFKKIT 687 Query: 723 ---------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770 + Q K++ + Y + + Sbjct: 688 IKSDILDVVSMEKVTLPMPTFNQMISAIRAKME-GAEISEYWSEVYKWYHDQEEYKLLKD 746 Query: 771 ----------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 S S + +N P++ + LK + Sbjct: 747 RIMRGFYYSNQGVIKNKEKIKKLYGEDYSVSRFETYVNCPFSYFVNYGLKAKERK--LYN 804 Query: 803 PDRTDRGTLFHNIITEL-------IKKRINKNTPEINHLMKQIIDSHFEKENL---PPHI 852 D+GT HN+I N + +++ + +N + Sbjct: 805 LTTLDKGTFLHNVIENFCISVIKEHASFENIDEDFCQQFSDKVLKETLKIDNSVLNSSNR 864 Query: 853 DIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------MAI---ESIGIHLTG 900 + K+ L + S + I + I + + G Sbjct: 865 YQYMANRLKKVLVRTLITITRQINNSDFKPISFEAEFDDNREFRPIEISLKDGTKAKIKG 924 Query: 901 FADRIDLL-KSGFV--DITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCR 955 DRID+L K + I DYK+ + QL + A L + + Sbjct: 925 KIDRIDILKKDDELYIRIIDYKSSSKTINLKDVYYGAQLQLLVYLDAILSYEEEEKHEKS 984 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 +FY ++ + I + K+K S +E+ E +NL Sbjct: 985 MPGAIFYYKI-----ENPIVSKKQKLSDEEIEEAITENLK 1019 >gi|330959507|gb|EGH59767.1| hypothetical protein PMA4326_13229 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 898 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 106/797 (13%), Positives = 228/797 (28%), Gaps = 93/797 (11%) Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + E + + QY L L +K + + Sbjct: 117 MDTDRFRFKEEFEAFFQWKAQLDSVCGAKQYVFRAHLPTLLLKAIKAGDVQAPERVIIVG 176 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + ++ + + + K L+ + N E + +A + L Sbjct: 177 MLSLNPAEKAVFEALKDLGTDVVIVAAEGDKATP--RLVRSHNNASEMLEVAQWVSNHLL 234 Query: 384 ENKKK-------SALITADRNLARRVKLELTRF---------------GINIDISAGIPL 421 + ++ R+ + L+ DIS+G L Sbjct: 235 PFVDTPHAAPSLAIVVPDIRSYKGPLLDALSLHTSPGSLMPAGTDGETRAPWDISSGATL 294 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + LL+ D + +++ E + Sbjct: 295 GSRPMVRAAMDLLSITPDKADAETFSRVLRSRWIAGHMGESATRALLD------------ 342 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L N + + + + LV+ + Sbjct: 343 -----------LWFRDNLGLNMGGKDFLRAIGSYKGDAVPDFRKRFGGLLEKLVSGEQ-- 389 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 N S+W L ++ +L + F+ +L Sbjct: 390 -----NRYPSEWADHFTVALADMGWPGQSELDSANFQTLNAWAEALAMFRTLDAQLGTVQ 444 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + ++D +P+I + + ILG ++ L+FD L + G + V P + Sbjct: 445 YERAFMWLREVVDTRQFQPRISHLAPVSILGYEDAIGLSFDALWVVGASNNVLPGRAEPS 504 Query: 662 PFLSRVMQSDLNLKTA--EKYIGQAAHDF-EMANGTRHLIYTRSLRENNIPTIASRWLQR 718 PF+ +Q D + A E + A + + + + + +I + L Sbjct: 505 PFIPTELQIDAGISDASSEGMLEYAQSVVGALLSCSADVSVSCPSHNEKGASIGASELFG 564 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L+ +G D +LD + + +E K Sbjct: 565 SW----PATAPTLETKGDFLDDMMGQLDRNNYEQ--EEVPAVSDIELTDIKGGVRIFKDY 618 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEIN 832 P+ + R L+ + P D +GT+ H ++ + K + E+ Sbjct: 619 AESPFFSFVRNRLRANMFPQPIIGLDPRIQGTMIHLVLEKFWTEVVTSKALKAFSVEELK 678 Query: 833 HLMKQII----DSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ + K + + + + +S +LE E+K + E I Sbjct: 679 TKVQHHTQLASEDLLYKLIWRYGLKLIMLEQRRIVDLSIEWLELEKKREYEFEVIGFEER 738 Query: 887 AKMAIESIGIHLTGFAD---RIDLLKSGFV---DITDYKTGDNPKKET--AQKLIDPQLS 938 ++ + + + ++ D RI L ++ V + DYKTG + + A L +PQL Sbjct: 739 HEIVVGQVPLTVS--LDRRERIFLDEAQTVSRCVVFDYKTGQEMRMNSLNASTLTEPQLP 796 Query: 939 LEA----AALKAGS-FSQIDCRKVAN--LFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + A ++++ I +V L + + F + K + + S+K Sbjct: 797 IYATKVDLSVESVEPIDGIVLAQVNQKSLGF-HARSNFSASLVEGKKARQEDVDTSDKWE 855 Query: 992 KNLIEIVTLLQNGEQPF 1008 L + F Sbjct: 856 AQKDAWNRQLDSMSAGF 872 >gi|15645703|ref|NP_207880.1| hypothetical protein HP1089 [Helicobacter pylori 26695] gi|2314241|gb|AAD08136.1| predicted coding region HP1089 [Helicobacter pylori 26695] Length = 778 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 63/384 (16%), Positives = 132/384 (34%), Gaps = 50/384 (13%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E + +K + + ++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKTPHALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + + KI +F + E + + I + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLVVLKKI-QAFYKKERERFNAEITILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDSMSKTQRGGLSPIEIAQISTDYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQK 968 K + + F+ L++ Sbjct: 709 KNLGYK-----EPIKAFFYDLRKG 727 >gi|182625393|ref|ZP_02953166.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str. JGS1721] gi|177909390|gb|EDT71842.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str. JGS1721] Length = 1158 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 129/907 (14%), Positives = 262/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNKKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D + + + N L L+ I Sbjct: 214 IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + ++ + + + L A+ Sbjct: 263 AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ V + K +SEE+K+ L D +TPL + Sbjct: 432 GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRESIVTPLDEFNKQC 481 Query: 542 NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591 + + + L + + + + E + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723 DFE + +I R + S L L+ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKLPTLNELMIAIRKNYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G D + K YL W +++Y K Y ++ K + S Sbjct: 722 GADIEEYWKYVYDWYLREPKWKERIEYVKKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + AL S + + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542] Length = 1111 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 121/1048 (11%), Positives = 260/1048 (24%), Gaps = 158/1048 (15%) Query: 45 ASVTIYVPTKRAIQELRSEFIEI-------------TGKKSTILPIIKSLGDVVEEKFTA 91 V T++A EL + + P I + Sbjct: 67 QEVLGLTFTRKAAGELSDRVGRRLRQLRRSRAGSGGSALDALDRPTISTYNSYAASLVGD 126 Query: 92 DLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 L +S + L+ W L + + + + L Sbjct: 127 HGLRIGREPGARLLSEASSWQVASDLVESWHGDLGTDAAVSTVVAAVLDLSNALSEHLLT 186 Query: 150 -----KNLADIIDIIET------EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + +A +++ I + DL L L + + +R Sbjct: 187 VAEAREQVARLVEQITSTPFGGKRRSLHADLGKLARSLGERHA------LLEVVEAFQQR 240 Query: 199 LVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 ++A + E + +++ + A RL+S++ Sbjct: 241 KRAMDALDFGDQVSLAAQLAVEVDAVAAGERARYAVVLLDEYQDTSYAQIRLLSSLFG-- 298 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 +G V D + W + ++ +L + Sbjct: 299 DGHPVTAVGDPNQSIYGWRGASASGPARFPDQFRDREGRPAAVHRLSTSWRNDLAILDVA 358 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 S +Y + L + P V + + EE + Sbjct: 359 NTTSRPLYL----------------ADPDNSLPSLEPRPSAGLGSVHGVYSATVEEEGAA 402 Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 IA + + +A++ R+ ++ L + G+ +++ L TT L +L Sbjct: 403 IAEFVAKRWEPGTTTAAVLCRARSQFPAIEAALRKRGLPVEVVGLGGLLTTPEVVDLVAL 462 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 L + + ++ L+ P G + + +++A R ++ + + ++ Sbjct: 463 LEVVHDPSRGDSLMRLLTGPRLNLGAADLHALASRSAELGRRNRADRPVEGDVTDERSIV 522 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 D + V S+ L + + D Sbjct: 523 DALDDLPAEGWVGPDGRSFSDAGWGRLRSLAGMLRELRALTYLSLPELVDRAERALGLDI 582 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWIDIITRL 612 V R + + + +T + W+ + Sbjct: 583 EMALVAARARDDAPSTRPTADPRGRAHLDAFRDVAATFADTSQLATLGAFLAWLSTAQQR 642 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS------- 665 G + ++ S+ L +D + + GL +G +P Sbjct: 643 ERGLDRPQGAPDPEAVQLITVHASKGLEWDVVAVPGLVDGAFPSTRTTGDKGPTSSGWLT 702 Query: 666 ------------RVMQSDLNLKTAEKYIGQAAH--------------------DFEMANG 693 +L+L A+ A Sbjct: 703 GLGQLPFPLRGDARDLPELSLAGADDSAELNARLVDFRERCGEHEVAEERRLAYVAFTRA 762 Query: 694 TRHLIYTRS-LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 L+ T + R P+ S +L L G F ++ + L P Sbjct: 763 RSDLLLTGAWWRSATKPSTPSLFLTELHEAGVLAEFTVAEQPEPGTSNPREDLTPEALWP 822 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIK---QLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 P P A + ++ +L+ + ++ + P + D G Sbjct: 823 PVDEPADGPEGSAAEAADGSATLREPLELLRRSRDLVLDALVDVAQHPASTEPVLARD-G 881 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH------------------ 851 T + L+ +R+ + T + + E Sbjct: 882 TDLTELSEILLAERLTRRTAVTAMEFPAHVSASGLVEIARDRDAYALALRRPVPRQPSVH 941 Query: 852 -----IDIIWRHLF-----------------------HKISHSFLEHEEKIQSSIEKIFV 883 +W ++ E + S + + V Sbjct: 942 SRRGTAFHLWVERQYGSTSLFDLDDMPGADDDLVDGDTALADLQRTFEASVWSGLVPLEV 1001 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSG--------FVDITDYKTGDNPKKETAQKLIDP 935 + I G+ D + L V + D+KTG P A + + Sbjct: 1002 EVAIDTMIA--GVITRTRIDAVFLDPEQPGGPDRAPGVVVVDWKTGRAPTDREAARAREV 1059 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYI 963 QL++ A +S V+ FY Sbjct: 1060 QLAVYRIAWSQ--WSGTPLEDVSAAFYY 1085 >gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] Length = 1195 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 98/916 (10%), Positives = 230/916 (25%), Gaps = 75/916 (8%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133 +L + + + ++ + + + L+L R + + + + Sbjct: 254 LLADLWPIPEFSDDALDLIMSIQKGASRAQDFA---LQLRRFDKVTGQRDREAVLRAAFL 310 Query: 134 SPLSLPISPANAIWLAKN--LADIIDIIETEEKKWED-LHALKNEKYGMWWLLAADFLKI 190 P S + A L D + + + E L LK + L A + Sbjct: 311 KSTGEPKSGSYVCSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELRLVRLNLAALTLVDN 370 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + + A ++ + I++ + + P Sbjct: 371 LLQRYHDLKRKRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 430 Query: 243 ARLMS--------TVANHPNGAIVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTYSTHP 292 +++ + + D + + + S + Sbjct: 431 WQVIRMLSEEFFSGLGQRNISRTLFAVGDEKQSIYSFQGAVPEDFAAQGRSVSLRAEDAE 490 Query: 293 Q-YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILE 346 + L + ++ + V + + +D + Sbjct: 491 LKFERVSLNFSFRSAPDVLQAVDEVFARPEAHRGLAGATVHEAIRADAPGEVEIWDMLTP 550 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------ENKKKSALITA 394 ++ V + A R A IA +R LD + L+ Sbjct: 551 EEVEEPDDWREPVDHLAAPAVR-LADQIAATIRHWLDSGEIIPGQNRRIMPRDIMVLVRK 609 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L + + + + L++ + L +L + + +D +++A+++K PL Sbjct: 610 RDQFMPALSRALKNLSVPVAGADRLRLTSHIAIQDLMALGRFVLQPSDDLSLASVLKSPL 669 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + + L + V ++ +N + Sbjct: 670 FGWDDDQLFELAHPRGSSLTLFERLYQVSRGDAALAEVHKTLSRWRNMADTMPVFEFYAR 729 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 A +L + P ++ + L+ + Sbjct: 730 IL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLDAASPEIKRE 787 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L + ++ + G+ + L+D + ++ L Sbjct: 788 LDQGRNEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPKLIPFDFS 835 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + L + +R + L + G Sbjct: 836 DGNPPVKGYLWQPNAGYQTGFTAAQIDKLKTRAEEEYRRLLYVGMTRAEDRLIICGYRGA 895 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 R T + + ++ + N + +D + D+ Sbjct: 896 RESGETWHRLAEDALAAKAETFVHPVLKLAARRYRNTPRGMVEIVDQDKTEDHALPSLPR 955 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 +P P PR + S LI P +L RGT Sbjct: 956 DYLRPIKPETGLPRPLAPSGASALIEADEEPPLDTFSPVLGPGNGSPAF----ALRRGTA 1011 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H ++ L + + +I P + I Sbjct: 1012 IHMLLQYLPDVPQADRETLAHDYLDRIAAD------WPETERQMAWQSVRTILDD--PTY 1063 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETA 929 + + + V I + + ++G DRI + V I DYKT P K + Sbjct: 1064 APVFAQGSRGEVAIMGTIELGGRDHAVSGQIDRI-SVGENRVLIVDYKTNRPPPKTIDAV 1122 Query: 930 QKLIDPQLSLEAAALK 945 QL+L L Sbjct: 1123 PFAYRAQLALYRELLA 1138 >gi|320102498|ref|YP_004178089.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644] gi|319749780|gb|ADV61540.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644] Length = 1245 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 123/1107 (11%), Positives = 288/1107 (26%), Gaps = 184/1107 (16%) Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + + L R+ + A L LP L + L+L Sbjct: 111 ARDHWRNRFTLDRARGLVRPRPDRVWDFAELWEHIGQALPKPPGRLGEVAALALIDECLQ 170 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 + L + ++ L +++ +W + A + R + Sbjct: 171 TARQRQLL-----KLVPQDIDLRGYRRLLRDQFRLW---TLSERRSAPRSDQSRTTSSSP 222 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD- 263 ++P+ +A L + + + + + +HP + + Sbjct: 223 ATPLSEFDQTAEEDAFTLFQLYRRWLETNRFEDAAGWVVWASHGLEHHPQVVRLRLEPET 282 Query: 264 ------CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 I +T + P+ +L++ + ++ V+ Sbjct: 283 VAVIDPPAHGPVIRRLLTFFRDHTRRLELVLPDDPEPTLSEPYRPWNALKQQVRAW---- 338 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADNEREE---AIS 373 + + V S + P + + T ++ + V ++ A + + A Sbjct: 339 --RFVENRVDSPADRPEGLAHLNATLFRLDEHHLPRHDQNQGVQILGAPSGEAQGLVAAR 396 Query: 374 IAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL 433 A+ L + L + + +L G+ + LS L + Sbjct: 397 EALRLHQQGIPWNQMLFLTRSWDEASDEWSRDLNACGVPLRSLRRKTLSEKPVIRSLLRI 456 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 + + + ++ L L + S+ L + + Sbjct: 457 IRLVAHDWPTGEVVACLRDRLIAPTETVFEPDERDTQAAFQELPSLRFSWLDRALAADAV 516 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLL-----------------------VDHILQC 530 R + +R+++ + H Sbjct: 517 ARTRLPGGLEALRVGLTRMTQAATGEPLDASRAATASPPRNLDQNDRFGRVRKARHARIA 576 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG----KTLSS 586 + L + + + L +H + W L Sbjct: 577 LRVLNWLAARLAPLNAPRTRPAHLDALEEVAEALDLTQHTDHLHDWSRFRLALEEDELIV 636 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETV------KPKIEKSSTLFILGTLESRLLN 640 S + ++ + ++ + ++ ++R L Sbjct: 637 RIDAEARGQSPPSESWSDFANRAEQIARDVRFEPGSETGWDSDHPDQATLMTLGQARGLK 696 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ----------------- 683 +++ L G +P + A L+ ++ I Sbjct: 697 AKVVMMANLGRGAFPSHRAAEALLANPFGGSAAGESELDAIAIDNESSVTDWFPTQETDN 756 Query: 684 -------AAHDFEMANGTRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKR- 734 AA + T HLI + + P A+ +++ + + F + R Sbjct: 757 LAFAHEMAAFLRVVGTATHHLILIYPKADLSGHPLQAAAFVEEVCRRFEPNLFPDPISRL 816 Query: 735 --------------------GQCYLDWTRKLDYTTKQP---------------------- 752 G L + P Sbjct: 817 DAVKEPNLCLTRSDRLVAAVGHALRGEVDDLRRLARDPGFLGALTGTSRALESNQARWHD 876 Query: 753 ------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 R + +S ++++ + P+ +AR +L L + + Sbjct: 877 HEFGPYDGMICSEPLRRWIAHTFAPEHWVFSPTQLESYLLCPFQFFARYVLGLITVENSD 936 Query: 801 K-DPDRTDRGTLFHNIITELIKKRINK---------NTPEINHLMKQIIDSHFEKENLP- 849 + +PD T+ G H ++ + K + +++ + EK + P Sbjct: 937 ELEPDYTESGRTIHAVLEHVHKIHPEPLQLATPTQSWKQALERELEREVRHRLEKHDPPI 996 Query: 850 ----PHIDIIWRHLF----HKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIES------- 893 + I+ + + ++ + + V + I+ Sbjct: 997 HPVEAGLRRIYAERLVRQCRRYLNQLEDYLARAGRGVRFEKVEAKFGERNIDGTLINPLI 1056 Query: 894 -----IGIHLTGFADRID--LLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + L G DRID + DYK+G P + ++ QL L A A Sbjct: 1057 LGKASERVVLQGTIDRIDVKREPDKPTLSFRVLDYKSGHVPSLKEVRERGAVQLPLYALA 1116 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 ++ +V + Y +++ K L + + ++E V L+ Sbjct: 1117 VERLGLLG-TPAEVEDFGYWDVRRDG-----WRAIKVSDWGALRDSLEQFVLEAVARLRQ 1170 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLARV 1030 GE P S + EY +L R+ Sbjct: 1171 GEFPVASR---DPQCTAFCEYRNLCRI 1194 >gi|168217732|ref|ZP_02643357.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239] gi|182380211|gb|EDT77690.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239] Length = 1158 Score = 145 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 125/907 (13%), Positives = 257/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D S + + + L L+ I Sbjct: 214 IGKLLKRAKSVNITLSID-----------EVNLPKGESDLFVATKNTEKRLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + ++ + + + L A+ Sbjct: 263 AFNGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ N + + + EE+K+ L D +TPL Sbjct: 432 GKKWME----------EWINYSSSILKEEEILEENKQRLERLNDIRETIVTPLDELNKQC 481 Query: 542 NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591 + + + L + + + + E + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723 DFE + +I R + S L L+ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELMIAIRKNYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G + D K YL W +++Y K Y ++ K + S Sbjct: 722 GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + A + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDAIINNSENIIENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|322387879|ref|ZP_08061486.1| exonuclease RexB [Streptococcus infantis ATCC 700779] gi|321141152|gb|EFX36650.1| exonuclease RexB [Streptococcus infantis ATCC 700779] Length = 1083 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 120/930 (12%), Positives = 252/930 (27%), Gaps = 143/930 (15%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + L +I + T + + DL +L + L + + T L Sbjct: 110 QDPQFIQQLIEIYHEMTTAKMSFLDLESLTDADKRSD-------LILIFEKITAYLN-QG 161 Query: 204 ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 S L+ A E+ ++ ++I G T L+ + G ++ G Sbjct: 162 QVSQGSPLSYLIDAIEENKVSSDFSEIALVIDGFTRFSAEEEHLVDLLHR--KGVEIIIG 219 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + S +S+ + Q S+ L + E Sbjct: 220 V-------------YASKRAYNSSFSEGNLYQASVEFL--------RHLAFKYQTKAEDA 258 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + +F D E + K ++ + ++EE +A ++R Sbjct: 259 CQEHKNLDAFAKASKLLESAYDYSEISLEVDAKDREELQIWSCLTQKEELELVARSIRQK 318 Query: 382 LDENKKKS-----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 L + K S L+ + ++ ++ I + ++ + + S+ Sbjct: 319 LHQEPKLSYKNFHILLGDVESYKLSLQTIFNQYQIPFYLGRSESMAHHPLTQFVESVGRL 378 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + L++ L + + +I + + Sbjct: 379 KRYYFRQEDLINLLRTGL----------------------YTDISQEEIDSFEQYIRYLG 416 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 +N ++ + D E L +L + L++ + K + Sbjct: 417 IDGLSNFKQEFTKNHHGKFDLEKLNELRVRVLNPLETLLSSRKQKTENILTKWNNFLKDA 476 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 +VT + EE K + + + +++ ++ + Sbjct: 477 SVTKQLQSLSETMDATEQERQEEVWKAFCHVMEQFATVFEGSQVTLDDFLALLHSGMSLS 536 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + L D + GL + PK T LS + LN +T Sbjct: 537 NYRTIPATVDKVLVQSYDLIAPLTSDYIYALGLTQDHLPKITQNMSLLSDEEREVLNQRT 596 Query: 677 AEKYIGQAAHD-------FEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG-- 723 E A + M + + L+ + N + S +L+ L G Sbjct: 597 QEGSQLLIASHENLKKNRYTMLSLVNSAKKQLVLSTPSLLNENESKESFYLKELQDFGFS 656 Query: 724 --------------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTT 749 G L RKL+ Sbjct: 657 KIEKRIDRRNLSKDDIGSYHSLLSSLVAYHQQGESETSEQDLTFIKVLARVMGRKLEDQG 716 Query: 750 KQPHYKRPKP-----------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + P + Q S S + + + Y+ Y R +L L Sbjct: 717 LENPVLPTSPKSKTLATETLEALYPQDQDFYLSTSGLTEFYRNEYSYYLRYVLGLQ--EE 774 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIW 856 + PD G H I +K ++ + F+ + Sbjct: 775 LRLRPDARSHGNFLHRIFERAMKLPVDTPFDRRLEQAISETSQEREFQAIYQESLEAQLT 834 Query: 857 RHLFHKISHS---FLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKS 910 + + ++ + L H +I++ E+ +++ G DRID LK+ Sbjct: 835 KEVLLDVARATGHILRHNSEIETIQEEAVFGGKEQAFVQLDNGRNVYVRGKVDRIDRLKT 894 Query: 911 GFVD-ITDYKTGDNPKKET-----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 + DYK+ ++ QL AALK + Y+ Sbjct: 895 SDAIGVVDYKS----SLTQFNFPLFYNGLNSQLPTYLAALKKEGNTDF-----FGAMYLE 945 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKNL 994 + + + K A+ + L Sbjct: 946 MTEPVQSLQTVKTLSKALAETTKTMKYQGL 975 >gi|120611308|ref|YP_970986.1| hypothetical protein Aave_2640 [Acidovorax citrulli AAC00-1] gi|120589772|gb|ABM33212.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1] Length = 883 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 120/854 (14%), Positives = 233/854 (27%), Gaps = 67/854 (7%) Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + L A + + L RA GP++ A + A + Sbjct: 82 DDLARDTARDTLTARSLLDRAGLGGQRDVLAGPLLDAACQLAPAVAAVPPAGREAWAGRV 141 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 L + + + T ++T + + + L Sbjct: 142 RPLLPPAADGAALRYEAAVARIALEWALATRHATDVLFE-----PRVRASAPVLVVLDGF 196 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENK-IPNIQKCFSDVALIEADNEREEAISIA 375 + ++ + +P+ + DVAL A + +EA A Sbjct: 197 QPDPLAHALCALWGPDRACVLPLCPASGSGGTGVPHAEAAAGDVALHAAADAEDEAQRAA 256 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + E + AL DR L RR+ L G+ + G LSTT + + + L Sbjct: 257 ACVLRYVAEGRTPVALAAIDRALTRRISALLAGRGVGVHDENGWTLSTTRAGAQVMAALR 316 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 A A+ +KH + R + S Sbjct: 317 ACMAHASGDAVLDWLKHVPIADAGALRQAERWLRRTGMGDWPAAVRSAG----------L 366 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 A +T E LV + + ++ T Sbjct: 367 AAGPVQDTAGAEGLEFPDPAAPEGWRTLVRRTEAWRAAMQAPRDLPGWLAALRALLQATG 426 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 ++ L +EG+ S E++ +++ Sbjct: 427 QWERLQEDAAGLRVLAELRLDLAQEGEW-------RGLDASGRPMALAEFVHWADEVLEA 479 Query: 616 ETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 +P+ + ++ + F L+ G +E +R + L Sbjct: 480 GRFRPEFGGDGVPDAVVVPLPQMLARPFAALVAAGCDEKRLQAAPEPPGAWTREQRETLG 539 Query: 674 LKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 L + A H+ + R E P +AS + L GG + + Sbjct: 540 LPMRNDLEAAQRAAWAHALSVGHVDVLWRIGDEGGEPLLASPLVLALQAEGGRRAGIDPR 599 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + RP P S S L + PY +A R+L Sbjct: 600 E------------LRSVAPSPVPRPLPRGD-ALPLVRVSSSAYSDLRHCPYRFFALRLLG 646 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQIIDSHFEKENLP 849 L + D+ D G H ++ + + ++T L+ ++ + L Sbjct: 647 LQESDELGAEVDKRDFGNWLHAVLQRFHEGLRDAPVEDTATRRQLLDAAAEATTRAQRLS 706 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + + + + +L ++ + F + + L G DR+D ++ Sbjct: 707 AGEFLPFSAGWPALREGYLRWLSGHEAGGAR-FREAERRCVQPLGSLELIGTLDRVDAVR 765 Query: 910 SG------FVDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLF 961 V + DYKT G++ + D QL+ AA L Sbjct: 766 GQAPGEPPTVMVIDYKTEGESATRRRIAAGTEDTQLAFYAALL---------GDDTLRAL 816 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 Y+ + ++ + + D+L E L + I + Sbjct: 817 YVNVGERGETRSFEQEDVVALRDQLVEGLLHDFARIAEGAPLPALGEGA-------VCDY 869 Query: 1022 SEYDHLARVAEWRE 1035 L R W + Sbjct: 870 CAARGLCRKDFWSD 883 >gi|18309002|ref|NP_560936.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str. 13] gi|81768349|sp|Q8XPE3|ADDB_CLOPE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|18143677|dbj|BAB79726.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str. 13] Length = 1158 Score = 144 bits (363), Expect = 8e-32, Method: Composition-based stats. Identities = 129/907 (14%), Positives = 263/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D S S + + + L L+ I Sbjct: 214 IGKLLKRAKSVNITLSID-----------EVNSLKGESDLFVATKNTEKRLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + ++ + + + L A+ Sbjct: 263 AFSGYINLNEDIPYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFSEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-IEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ V + K +SEE+K+ L D +TPL + Sbjct: 432 GKKWME--EWVNYSSSILKEEE--------ISEENKQRLERLNDIRETIVTPLDEFNKQC 481 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRK----------LPNLWFEEEGKTLSSLFSKI 591 + + ++ + + + E + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDIMDTLDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723 DFE + +I R + S L L+ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKIPTLNELMIAIRKNYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G + D K YL W +++Y K Y ++ K + S Sbjct: 722 GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + AL S + + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|227507849|ref|ZP_03937898.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192687|gb|EEI72754.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1181 Score = 144 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 104/983 (10%), Positives = 251/983 (25%), Gaps = 161/983 (16%) Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 +S + L +++ ++ L ++ A +A I +++ Sbjct: 91 ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 EDL + + + I + +R+ + + + + + ++ Sbjct: 138 NILPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I+ + RL+ T+ + LD + Sbjct: 195 LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + S K + L ++ + + L Sbjct: 246 PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396 + L N + + +ADN+ E +A +R + ++T Sbjct: 296 IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355 Query: 397 NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451 + + T I + +L +L + + + + +K Sbjct: 356 DSYETILDSIFTMQQIPYFRDIQKSMVDHPLVELLGALFDMYDPDRPRNYRYDDVMRFLK 415 Query: 452 HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L + +A + E + L+ + +A + T + Sbjct: 416 SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWIQDDDWQYVWVADDDDGTVL 475 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562 R++++ + L+ + + KTN ++ Sbjct: 476 TDKDKRITQQINVIRHLVKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 +D + E+ +T SL + + A ++ +I +G T Sbjct: 536 A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD----------L 672 + I + ++ N ++ G N+ P+ S L Sbjct: 595 STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNESLFGDDDVSQIQDNLSDSQYL 654 Query: 673 NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720 N E+ + ++ + LI++ + N+ I S ++ R+ Sbjct: 655 NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714 Query: 721 -----------------------------------------VLGGTDFFDNLKKRGQCYL 739 + Sbjct: 715 AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 +DY R + S S+++ +PY + + L+L F Sbjct: 775 RLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851 + G FH + +I + + + ++ + E P Sbjct: 834 E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891 Query: 852 ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897 I + + ++ + +++ + + + ++ + Sbjct: 892 ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949 Query: 898 L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945 L G DRID +K I DYK+ A QL L+ Sbjct: 950 LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009 Query: 946 AG---SFSQIDCRKVANLFYIRL 965 +A Y+ + Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032 >gi|227510907|ref|ZP_03940956.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus buchneri ATCC 11577] gi|227085859|gb|EEI21171.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus buchneri ATCC 11577] Length = 1181 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 103/983 (10%), Positives = 249/983 (25%), Gaps = 161/983 (16%) Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 +S + L +++ ++ L ++ A +A I +++ Sbjct: 91 ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 EDL + + + I + +R+ + + + + + ++ Sbjct: 138 NVLPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I+ + RL+ T+ + LD + Sbjct: 195 LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + S K + L ++ + + L Sbjct: 246 PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396 + L N + + +ADN+ E +A +R + ++T Sbjct: 296 IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355 Query: 397 NLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451 + + T I + +L +L + + + + +K Sbjct: 356 DSYETILDPIFTMQQIPYFRDIQKSMVDHPLVELLEALFDMYDPDRPRNYRYDDVMRFLK 415 Query: 452 HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L + +A + E + L+ +A + T + Sbjct: 416 SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWTQDDDWQYVWVADDDDGTVL 475 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562 R++++ + L+ + + KTN ++ Sbjct: 476 TEKDKRITQQINVIRHLIKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 +D + E+ +T SL + + A ++ +I +G T Sbjct: 536 A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----------QSDL 672 + I + ++ N ++ G N+ P+ L Sbjct: 595 STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNKSLFGDDDVLQIQDNLSDSQYL 654 Query: 673 NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720 N E+ + ++ + LI++ + N+ I S ++ R+ Sbjct: 655 NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714 Query: 721 -----------------------------------------VLGGTDFFDNLKKRGQCYL 739 + Sbjct: 715 AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 +DY R + S S+++ +PY + + L+L F Sbjct: 775 QLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851 + G FH + +I + + + ++ + E P Sbjct: 834 E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891 Query: 852 ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897 I + + ++ + +++ + + + ++ + Sbjct: 892 ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949 Query: 898 L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945 L G DRID +K I DYK+ A QL L+ Sbjct: 950 LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009 Query: 946 AG---SFSQIDCRKVANLFYIRL 965 +A Y+ + Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032 >gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 918 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 96/1001 (9%), Positives = 256/1001 (25%), Gaps = 161/1001 (16%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 ++ + + ++P L + TK+A EL+ + G ++ + I ++ Sbjct: 35 IIVERVAQLIEERGVDPGSL---VVITFTKKAADELKERILGRVGSRAEEM-QISTIHSF 90 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +P S ++ ++ L L +P Sbjct: 91 CNRILRTYP----DHHPLGS-----------HFHVLDEEKQLMFIYDHREELGLAHTPRE 135 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L + + E L A + + + E Sbjct: 136 RF---VKLQAFFSECQENMIEPEALLEYHRSHGS---KRIEIVAAKAYGKYLKLMEEKRV 189 Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 G Q +++ + +++ + P R + +A + Sbjct: 190 LDFSGMQWQVVKLLESDERVLEDLRARYRFLMVDEYQDTNPIQERFLELLAGDEKN--IF 247 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD--IKREDVKRLGNVS 317 D + T ++ + + + +R Sbjct: 248 AVGDEDQSIYGFRGSTPENFLGFEDKYGAEVVMLERNFRSVPSIVDITQRFMEGYRDYPK 307 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 R+ V +++ ++E +I Sbjct: 308 TIRPVRNSKNR------------------------------VFILDNPTHQDEPRNIVSI 337 Query: 378 LRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 +R +D + L + ++ A + EL R I ++ Sbjct: 338 IRALVDHDVIPHQGYVTLLFRSVKHDAVEIMNELRREDIPFNVYGEGG------------ 385 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSL 491 F + + I L+ H R E ++ + + Sbjct: 386 ----FFDREEILYIIQLLHH-------TRSIRRRIVRLSNENTEHFESEFMDLTGESIEI 434 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + D + LV + L + + Sbjct: 435 IKNMGDEDFRSLRTHEEFREAGFTDHDDIEKLVALNRLIDSELGVLERYYEILEISRYPH 494 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + L+ ++ + ++ + E++ + Sbjct: 495 RLLER----------GDDESREKLYNLARFSSIIKDYERVSSEPTVEGLM--EFVRMAMN 542 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE---GVWPKNTAKNPFLSRVM 668 + + ++ ++ ++ ++ L F +I+ + ++ ++ + + Sbjct: 543 GSVKKYDQILLDNPYSVNVMTMHRAKGLEFPVVIICSVFNGKLPRKNRDEQEDLSIPDEL 602 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 + + + + + ++ + + S +++ L L + Sbjct: 603 RKSTG---RGDVLEERRLFYVGMTRAQDMLIISATENHRGRLGYSPFIEDL--LSASRIT 657 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + R + T + + + SF+E+ + P+ Sbjct: 658 SDKLGRIDPEYARIEVIKNTCEVGDIE--------SMETFRMSFTELNTYLTCPFRYMML 709 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 D + G H + + ++ + + + + ++ NL Sbjct: 710 YEYGFDVPSTMNQ-----IYGMAVHECLRRINRRLM-RGEVITDGYIHELASETLRDLNL 763 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 ++ + + I P + + G LTG D I Sbjct: 764 SREAFDAFKSKLKRYIEDI------RSRAARIISAEKPFSIMRD--GFMLTGQTDLIIEN 815 Query: 909 KSGFVDITDYK--TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 +G +++ D+K TG+ + QL L AL+ F L Y Sbjct: 816 PNGGLELVDFKAMTGEGIEATDI----SLQLGLYRHALEED-FDGF-------LAY---- 859 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 T + ++ E + LIE+ ++ E P Sbjct: 860 --------TFEDSEWHEIEPLDDVEAVLIEVAGRVRREEFP 892 >gi|227523106|ref|ZP_03953155.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus hilgardii ATCC 8290] gi|227089710|gb|EEI25022.1| ATP-dependent deoxyribonuclease, subunit B [Lactobacillus hilgardii ATCC 8290] Length = 1181 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 103/983 (10%), Positives = 249/983 (25%), Gaps = 161/983 (16%) Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 +S + L +++ ++ L ++ A +A I +++ Sbjct: 91 ISPAGINMLLYQIMTEHQDDLILFSQE-------------AGLPGFIDQIAHQISVMQAG 137 Query: 163 EKKWEDLHAL---KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 EDL + + + I + +R+ + + + + + ++ Sbjct: 138 NVLPEDLMKMNENQESRLSNDLRDKLHDFSIIYAEYEKRIDDQYFDN---HNVLNLLSDY 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I+ + RL+ T+ + LD + Sbjct: 195 LQRQDLSHYHFYISDFSKFTAQECRLVETLTQGGASMTMSLILDKPY---------RTAL 245 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + S K + L ++ + + L Sbjct: 246 PDQPNLFYQSAKLFLRFYKF-----AADNQIPYLPIITADQPR-----ISADLLKLEKFW 295 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADR 396 + L N + + +ADN+ E +A +R + ++T Sbjct: 296 IQSSGLGAIDDNPITVSKSIQVYQADNQYSELDQMATRIRQMVSTGKYRYSDFLILTRHL 355 Query: 397 NLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVK 451 + + T I + +L +L + + + + +K Sbjct: 356 DSYETILGPIFTMQQIPYFRDIQKSMVDHPLVELLGALFDMYDPDRPRNYRYDDVMRFLK 415 Query: 452 HPLAKFGFPEK------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L + +A + E + L+ +A + T + Sbjct: 416 SELVLPQATDGTAMKIDDYRQAVSLTENLVLKNGFEGKKWTQDDDWQYVWVADDDDGTVL 475 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLTVTCLQ 562 R++++ + L+ + + KTN ++ Sbjct: 476 TEKDKRITQQINVIRHLIKNALPNFYNRFYKAKTNADAAGILYRFLVENGVVNRLQDWRN 535 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 +D + E+ +T SL + + A ++ +I +G T Sbjct: 536 A-AVDRQDINRSDEIEQVWRTFCSLLDENVRILGDKPFVAQDFWALIYAGFEGATYSQIP 594 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM----------QSDL 672 + I + ++ N ++ G N+ P+ L Sbjct: 595 STLDQVQISESGMVQMNNRKVTMMIGSNDETMPERIVNESLFGDDDVLQIQDNLSDSQYL 654 Query: 673 NLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTI-ASRWLQRLL---------- 720 N E+ + ++ + LI++ + N+ I S ++ R+ Sbjct: 655 NDPADEQMAAEPYLNYLAFTSPSSRLIFSYTNHVNDESGINLSPYVSRIAAHFNLKVVNY 714 Query: 721 -----------------------------------------VLGGTDFFDNLKKRGQCYL 739 + Sbjct: 715 AAVPDNQRAVNVYIGSKRATLHHLIQVIQDTYKNKGQLNDTWAFIFNQLKQDPDAAPLTN 774 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 +DY R + S S+++ +PY + + L+L F Sbjct: 775 QLLGSIDYKNVPVPLSREIAEKLYGSALN-ISISQLESFYENPYEYFLKYGLRLQEREQF 833 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPH----- 851 + G FH + +I + + + ++ + E P Sbjct: 834 E--LSPASTGQFFHEALDRIISMVHEQKIDLAGLSDRDVDDLVAENVEAMVNDPDNFQYI 891 Query: 852 ----------IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA----IESIGIH 897 I + + ++ + +++ + + + ++ + Sbjct: 892 ILNSSNRMHYITLQLQATIQQMIRTM--RDQQRITPMRPQNTELIFGQPSSKGLKGLSFE 949 Query: 898 L--------TGFADRIDLLK--SGFVD-ITDYKT-GDNPKKETAQKLIDPQLSLEAAALK 945 L G DRID +K I DYK+ A QL L+ Sbjct: 950 LPNQKKVNVRGRIDRIDSMKVNDKRYFGIVDYKSADKKFDFNQAYIGTSMQLLTYLDVLR 1009 Query: 946 AG---SFSQIDCRKVANLFYIRL 965 +A Y+ + Sbjct: 1010 YNLSTLNPDSSDALLAGALYMHI 1032 >gi|304314626|ref|YP_003849773.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302588085|gb|ADL58460.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 916 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 99/957 (10%), Positives = 261/957 (27%), Gaps = 139/957 (14%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 P V P + R ++ + ++P ++ + T++A EL+S Sbjct: 23 TDGPLVIVAGPGAGKTRVLVE-----RTAYLVKRKGVSPE---NILVITFTEKAADELKS 74 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 I G + ++ I ++ L + Sbjct: 75 RLINCVGLDAELM-QISTIHSFCSTILREHPE-------------------EHDLGAGFE 114 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAK--NLADIIDIIETEEKKWEDLHALKNEKYGMW 180 + D L + I + + + + + + ++L ++Y Sbjct: 115 ILDEESQLMFLRSVFYRIGLNSFMKMGEVHEAIEFFNRCTENCVDPDELMEALKKRYPD- 173 Query: 181 WLLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLM--KGTKGPIIIAGS 235 + + + L E L+++ + L + I+I Sbjct: 174 -KKRYHGMAACYSQYLKALREEKKIDFPGLEKEVCLLLKSNEDVLESVRNKYRYIMIDEY 232 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 + P R+ +A + V+ D + T ++ Sbjct: 233 QDTSPIQERIFRRIAEPKSSICVV--GDEDQSIYGFRGATPENFIRFRDKYDAEVVFLED 290 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 + + + + R + I ++ Sbjct: 291 NFRSRAGIVLTADRFMR----------------------------GERHYQKTIKPVRGG 322 Query: 356 FSDVALIEADNEREEAISIAIALRMS-----LDENKKKSALITADRNLARRVKLELTRFG 410 +DV ++ + + EA +I ++ + + + L + R A ++ EL R G Sbjct: 323 GTDVVILRSRDVNSEARNIVSLIKKLKSTGKIPDYGYVALLFRSVRYHADKILRELRREG 382 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I + + + Sbjct: 383 IPYIVRGDGSFLKRYEVRRML----------------------YFLAYVDPPDYDDKFSG 420 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D +DL L+ + + + + + + S E + + IL Sbjct: 421 RWGGWWNISMFRGDFLDLGEETLEALESLERDVKLSDFTSIQELEAAGIRGEDAEKILGL 480 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + ++T + + + ++ + +L + Sbjct: 481 NRIRDELEQGS--LSVLQTFYRILEVTGYLRRLLLDGSDKSRARIFNLAKLSSLIDKYET 538 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 I + + ++ ++ + + + + +++ ++ +++ L F + + + Sbjct: 539 IKPGARIQ--DILWYLYLLPQHLHHDEAVLEDP--ASVKVMTVHQAKGLEFPVVFICSVI 594 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 +G +P + L + +L L + E + + LI + + R N Sbjct: 595 KGRFPGIKRRRKEL-VPIPQELLLSSGEPEDEDRRLFYVAMTRAQDALIISTAPRINTRK 653 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S ++ L G + G +W + P Sbjct: 654 VGISPYITELREKCGIYECECTSIEGCLEREWAEE----------------------PLR 691 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 +FS + P+ + F + G + H + EL N + Sbjct: 692 INFSALFTYEECPFRYMMIYHYGFVYPETFMQR-----YGIILHRCLEELHLAMKN-SED 745 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 ++++++ + + + + ++ + + E + V P Sbjct: 746 INGAFIRELVERCWIPMGRDDEVK---KRRLERELLNY--YHDSRDHIEEVVSVEEPFS- 799 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 I I + G D I G +++ D+K + ++ QL AL+ Sbjct: 800 -IPDDDIIIEGRTDLIIRNSGGELELVDFK--AREHGGIERMGLEYQLRTYEYALRD 853 >gi|242309696|ref|ZP_04808851.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523697|gb|EEQ63563.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 670 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 133/409 (32%), Gaps = 44/409 (10%) Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + ++G LE+R + F +I+ NE PK K+ FL+ +++ + L T + Sbjct: 299 GGGRISVIGILETRGIEFSYIIVPEFNENNVPKVNQKDIFLNSLIREKVGLPTKKDRENL 358 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + H + + NN SR+L + F+ KK G +L Sbjct: 359 QKYYYSRLF--EHSLEVGVMFLNNDEDKPSRFLLDDKIFSEARFYKASKKYGDYFLS--- 413 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 K YK + PLE S S+++ L+ Y R +L + Sbjct: 414 -----GKALQYKEREIVAPLELGIM--SASKLECLLTCARKYYYRYVLGYKE----ENSN 462 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + G H ++ E + +++ + + + + Sbjct: 463 MGANVGMKLHKVLQEAYSSYQTHHNF---AQLQEEVYRGLQDYETKREFFELELA--KRY 517 Query: 864 SHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 F + E++ Q + + I G DRID K + DYK Sbjct: 518 LQKFFKTEQEHLQEGWIPVEFERKFSFGVCGIPFE--GRIDRIDK-KGQDFFVLDYKYKR 574 Query: 923 N---PKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 N K + + D QL L A A++ I + K + Sbjct: 575 NLKIGSKRSIENSKDFQLVLYAMAIQE----------------IHSNAEVKAGFYDIYEA 618 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K ++ + + L E + + ++ F L E+ +L Sbjct: 619 KIKEEKALIEKKEKLEERLEYYKGMQKEFSFELCKERSPCSFCEFIYLC 667 >gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp. avium ATCC 25291] Length = 1139 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 124/1041 (11%), Positives = 261/1041 (25%), Gaps = 125/1041 (12%) Query: 45 ASVTIYVPTKRAI----QELRSEFIEITGKK--------STILPIIKSLGDVVEEKFTAD 92 V T++A + +RS + G + P + F Sbjct: 107 GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGAASPNHGAVDPEAAPVVS-TYHAFAGS 165 Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAK 150 LL Y L PV RLL L + + + L + + S +W LA+ Sbjct: 166 LLRDYGLLLPVEPDTRLLSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVLRLWGQLAE 225 Query: 151 NLADIIDIIETEEKKWEDLHALKNE----KYGMWWLLAADF---------LKIASKYWTE 197 +L D + + E L + L + E Sbjct: 226 HLVDT-SQLRETHLELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDE 284 Query: 198 RLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--A 250 R+ + + R + ++G +++ + A +S + Sbjct: 285 RMRAVKVMDFGMQMASAARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFGG 344 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 +G + D W + + +++ S + +L + Sbjct: 345 GVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPRTL 404 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + +S E RS+ + PD L + ++ +D I+A R Sbjct: 405 RVANAISAEARRRSVAVHALRPRPDAPPGTVRCALLPDVVAERQWIAD--HIDAHYRRAR 462 Query: 371 AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A ++ +A++ A + L GI +++ L + + L Sbjct: 463 ADGVS----------PPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAEL 512 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 ++L + A ++ P + G + + A L + S Sbjct: 513 VAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAAL-WQRARALGGAGAAGGPATAEAIAS 571 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVTYKTNKNSTCGNL 548 R E A + + + Sbjct: 572 AADPRNVEADAVCLADAIADPGPAEGYSAAGYARIAALAAELSALRAHLDQPLGDLVAEV 631 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 V L G + + S A + ++D+ Sbjct: 632 RRVVGLDCEVRAAAAAGWAGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDV 691 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS--- 665 + +G P + +L ++ L + + + L+ GV+P TAK +L+ Sbjct: 692 AESVENGLPAAPLAVARDRVQVLTVHSAKGLEWQLVAVARLSGGVFPSTTAKTTWLTDAA 751 Query: 666 ---------RVMQSDLNLKTAE------------------------KYIGQAAHDFEMAN 692 R L + + + + + Sbjct: 752 ELPPLLRGDRARPGALGIPVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVT 811 Query: 693 GTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 + P S +L + + Sbjct: 812 RAEDTLLVSGHHWAATGIKPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWASAPADGERN 871 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 +P R L+ A D +R Sbjct: 872 PLRDNVVEAVWPADPLASRRGEVERGAALVRQAMAAEPGDPGADVEGWAADVDALLAERA 931 Query: 810 TLFHNIITELIKKR-------INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF-- 860 + L + + ++ ++ + S E L + W F Sbjct: 932 RVTGPPPQVLPGQLSVSSLVGLARDPAGAAQRLRHRLPSRPEPHALLGNAFHAWVQKFYG 991 Query: 861 ---------------------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 +++ E ++ + V +P +M I + Sbjct: 992 AECLFELGDLPGAADSDVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDT--LVR 1049 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G D + G + D+KTG P A + QL++ A + +++ V Sbjct: 1050 GRIDAVFAESDGGATVVDWKTGAPPDSPEAMRQAAVQLAVYRLAWA--ALAKVPESSVRT 1107 Query: 960 LF-YIRLKQKFKIDCITNDKK 979 F Y+R + + + + Sbjct: 1108 AFHYVRARTTVVPEALPTSDE 1128 >gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB] gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter fumaroxidans MPOB] Length = 1162 Score = 144 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 112/953 (11%), Positives = 238/953 (24%), Gaps = 73/953 (7%) Query: 55 RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI--QRLLEL 112 RA++EL + P+ K+ G +E+ L PV + L + Sbjct: 228 RAVRELVEVELRALRGAFAGSPLGKAWGSFIEDLENRGASAGTELPRPVPGATWEELPQW 287 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL-ADIIDIIETEEKKWEDLHA 171 R+ K K P S L + L D D + + Sbjct: 288 RRIADALLTKAGAPRKSFGPASGFYSGFGKTPWCNLVRELEGDTADRLHR-------IRE 340 Query: 172 LKNEKYGMWWLLAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAE-------AE 220 L ++ L + + ER ++A +R + Sbjct: 341 LPVKEASRPDAETLFDLILLLHAIIEAYDERCRSRRLLDFSALEMAALRLFDQVRPSDLQ 400 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEK 277 L+ +++ + RL+ + + + D + Sbjct: 401 LLLDHRVRHVLVDEFQDTSRQQWRLLRHLFEGWEAGDAKTLFVVGDPKQSIYAFRKAEVM 460 Query: 278 STNITSSNTTYSTHPQYSLAKLL--DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + H + L L+ + ++ + + R +P Sbjct: 461 LFTEAKNGLPIDEHRRLPLESLVLSTNFRSQPHLIQWANGLFGQTVMRDPRPEIDEVPFI 520 Query: 336 TS-DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 S T +E P F+ A RE + + + ++ Sbjct: 521 PSVASPATRPVECPEPPELALFNGWPAPAAARRREAEWLARNVWEETRESPDTRIGVLLF 580 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 R R+ + + ++ G+ L L L A+ +D +A A+ + P Sbjct: 581 ARTHLATYLEAFQRWKVPVQVAEGLKLLERPEVKYLRQLCRALVLPHDDLAWASQLHSPW 640 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 GF + Y + V + D A + ++ Sbjct: 641 LVLGFDDLYAVSLETGDSWVEKIRSFAQKDERVAGFWNGLEAARRHLGHEPLADVMEIAW 700 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 D A ++ + + L+N + Sbjct: 701 LDLGGARIVSQRWGGRGLACCRRFFQLIREAETHEPVETLRRLEELLENAYEPVDPETAR 760 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 S + + ++ +++ + + + + + G L Sbjct: 761 ----------SGVSVMTVHRAKGLEFDSVYLPFLDWNPVVRQRSSQQPYLLERVPGSGEL 810 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + D L W + + T + + + + Sbjct: 811 FLLAAHPDRLKGEPDPLFSWLARLQADRAWGEAKRLFYVAVTRSRTRLHLSGVVPLRKSS 870 Query: 695 RHLIY-------TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 LI+ + + + ++ G + ++ D R L Sbjct: 871 EELIFPPKCPLAWLNEHFDFSESPGAQGFSLPEGSEGGEVPAAWRREWSAGGDALRVLVE 930 Query: 748 TTKQPH-------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y+ + P + R + PY P Sbjct: 931 PAPSKPPAGAAETYEPVEIHPAAFERERPLFRITSPSSLALPYDEEEGEEDFEPSAPWES 990 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 + RGTL H ++ + + P I + ++ + E + Sbjct: 991 PETLPRLRGTLVHRLLADFAC---GRKLPSIEAIRSRLGREGMDAEGAGETARSVLAE-- 1045 Query: 861 HKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 LE +FV + + + L+G D + G + D Sbjct: 1046 ---VERCLEDPWLSPCFALPPDLLFVEYSLESLHDPREL-LSGKID-LAAYLDGRWRLID 1100 Query: 918 YKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 YKT E+A+ L PQL+ ++ +V Y+ Sbjct: 1101 YKTSRGKAGESAETLCRRELERYAPQLAAYRQMWAR--LRGVEEGEVEIYVYL 1151 >gi|329891016|ref|ZP_08269359.1| double-strand break repair protein AddB [Brevundimonas diminuta ATCC 11568] gi|328846317|gb|EGF95881.1| double-strand break repair protein AddB [Brevundimonas diminuta ATCC 11568] Length = 235 Score = 144 bits (362), Expect = 1e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 5/225 (2%) Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H I L + + +++ ++++++ L + E Sbjct: 1 MHKAIERLTEDWPDLLPDDLDAVIERLLLEELGAHGFEDAAMAREAPLARNAARWLAGFE 60 Query: 872 EKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929 ++ ++ + + + +ADRI++ + + D+KTG P + Sbjct: 61 TNRRARGVQLLIEQQGALTFDAPGGPFTVKAYADRIEV-GALSAAVMDFKTGQVPTAKQI 119 Query: 930 QKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + PQL+L A L AG F + L Y+R+ + K + A LS+ Sbjct: 120 KAGFAPQLTLTGAILAAGGFKETNGPVPPEELTYVRVVGRKKAGEVAVRAAGPEAQILSD 179 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAEW 1033 +L+ L+ V E P++S + S Y+ LARV EW Sbjct: 180 AALQGLMARVAEFDRPETPYLSWAAPHLMGS-YSPYNLLARVWEW 223 >gi|317010636|gb|ADU84383.1| hypothetical protein HPSA_01810 [Helicobacter pylori SouthAfrica7] Length = 778 Score = 144 bits (362), Expect = 1e-31, Method: Composition-based stats. Identities = 83/482 (17%), Positives = 161/482 (33%), Gaps = 67/482 (13%) Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 LV + + GNLS S L+N+ L + + +L S+I+ Sbjct: 315 LVKILEDLENNDGNLSASALLD-----LENLTLSLLEEQSSKEQ----ASLKETHSQIMH 365 Query: 594 TGSCIKANAIEWI--DIITRLIDG--ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ + D++ + + + ++ TLE+R + FD +++ Sbjct: 366 QYHLLEDTLKNYSFKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIADF 425 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNI 708 NE P + FL+ ++ LNL T H + ++ ++ + E + Sbjct: 426 NESCVPNLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSK 485 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 AS L L + D+ + Sbjct: 486 ---ASNMLLELDLNLKPIKDAYTLFATSPLKDYQEEDIKAAIPK--------------GF 528 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 +S S + + Y I + + + G+L H ++ E + NK+ Sbjct: 529 GFSASSLNTFLACKRRFYYHYIKRFRESSKDE---SNSTVGSLLHELLKEAYE--KNKSP 583 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPA 887 + + Q+++ KEN P + KI +F + E++ + + + Sbjct: 584 DLLKERLIQLLEK---KENTTPKERLDTLIAIEKI-QAFYKKEQQRFNEKTTILDLEKSF 639 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLI 933 + IE G+ G DRID + + DYK G+ E AQ Sbjct: 640 ETTIE--GVLFKGRIDRIDKSTDNEIILLDYKFKSELQLDNMSKKQRGNLSPTEIAQIST 697 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK-----KYSADELSE 988 D Q+++ A ALK + + F+ L++ + D K + EL E Sbjct: 698 DYQMAIYAYALKNLGYK-----EPIKAFFYDLRKGELVGEDELDLKMDYLVRSLIPELKE 752 Query: 989 KS 990 + Sbjct: 753 EI 754 >gi|261839208|gb|ACX98973.1| hypothetical protein HPKB_0364 [Helicobacter pylori 52] Length = 778 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 70/438 (15%), Positives = 147/438 (33%), Gaps = 49/438 (11%) Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 DW+ + L+N+ L + + + S + + + +++ + + Sbjct: 328 DWSASPLLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLTNYSLKDLLHLYL 387 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + + ++ TLE+R + FD +++ NE P + FL+ ++ Sbjct: 388 QEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKS 447 Query: 672 LNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 LNL T H + ++ ++ + E + S L L + Sbjct: 448 LNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLELDLHIEPIKDAY 504 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 D+ + T ++S S + + Y I Sbjct: 505 TLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFLTCKRRFYYHYI 550 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 + + G+L H ++ E + +KN + + Q+++ +EN+ P Sbjct: 551 KRFKE-NPKDESNSA--VGSLLHELLKEAYE--KDKNPYALEERLIQLLE---TRENITP 602 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + KI +F E++ + I+ + + + I+ G+ G DRID Sbjct: 603 KERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAFKGRIDRIDKTA 659 Query: 910 SGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 V + DYK G E AQ D Q+++ A ALK + Sbjct: 660 DNEVILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFALKNLGYKG---- 715 Query: 956 KVANLFYIRLKQKFKIDC 973 F+ L++ ++ Sbjct: 716 -PIKAFFYDLRKGKLLEE 732 >gi|168210475|ref|ZP_02636100.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str. ATCC 3626] gi|170711424|gb|EDT23606.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str. ATCC 3626] Length = 1158 Score = 143 bits (360), Expect = 2e-31, Method: Composition-based stats. Identities = 130/907 (14%), Positives = 263/907 (28%), Gaps = 143/907 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + LK + RL E Q+ L+ + + I I + P + Sbjct: 156 EELKDVFNEFNSRLHE-GYVDE-EDQLLLLNEKLDGCSLYDGAEIWIDEFSSFTPNQLSV 213 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + +D + + + N L L+ I Sbjct: 214 IGKLLKRAKSVNITLSIDEVNSPKGESDLFVATKNTEK-----------RLMNLIQEEGI 262 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 L + + + ++ + + + L A+ Sbjct: 263 AFNGYINLNEDISYRFKENKELAHIERQLYAYPFKQYRGKN----------NSLRLYRAN 312 Query: 366 NEREEAISIAIALRMSLDE---NKKKSALITADRN-LARRVKLELTRFGINIDISAGIPL 421 N +E +A + + E K ++I D + + V + I I I + Sbjct: 313 NNYDEIEFVAKDILRLVREKQYRFKDISVICRDVDNYEKVVSAIFAEYEIPYYIDKKIDI 372 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + S ++ I K + ++ +K L K + + LE L Sbjct: 373 ASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRG-VEGAELIDELENYVLAYGIK 431 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M+ V + K +SEE+K+ L D +TPL + Sbjct: 432 GKKWME--EWVNYSSSILKEEE--------VSEENKQRLERLNDIRETIVTPLDEFNKQC 481 Query: 542 NSTCGNLSISDWT-KLTVTCLQNVCLDE---------HRKLPNLWFEEEGKTLSSLFSKI 591 + + + L + + + + E + + Sbjct: 482 KGKKTLKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQA 541 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ N E++ ++ + + + I + L + G+N+ Sbjct: 542 VDVLGNEVMNLDEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVND 601 Query: 652 GVWPKNTAKNPFLS---RVMQSDLNLKTA---------EKYIGQAAH------------- 686 GV P + + LS R + + + A E+++ A Sbjct: 602 GVLPSASKEEGILSDNDREILLEKGISLASDTRTKIFEEQFLVYTAFTIAEEYLVVTYPL 661 Query: 687 -DFEMANGTRHLIYTRSLRENNIPTIAS-----------------RWLQRLL-----VLG 723 DFE + +I R + S L L+ Sbjct: 662 ADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKIPTLNELMIAIRKNYD 721 Query: 724 GTDFFDNLKKRGQCYLD---WTRKLDYTTKQPHY---------KRPKPFPPLEAQPRTYS 771 G + D K YL W +++Y K Y ++ K + S Sbjct: 722 GAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYEDNKNKISLS 781 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT--- 828 S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 782 VSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDLKWS 839 Query: 829 ----PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQSSI 878 +++ ++D+ + L + F +I + E+ +S Sbjct: 840 DLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKRSDF 899 Query: 879 EKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGDNP- 924 E + K+ + +L G DR+D L G + I DYKTG Sbjct: 900 EIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGSKKF 959 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + QL + AL S + + + + Y R+ D I K + Sbjct: 960 DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGDLTE 1014 Query: 984 DELSEKS 990 +E+ + Sbjct: 1015 EEIKSEV 1021 >gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] Length = 1106 Score = 143 bits (360), Expect = 2e-31, Method: Composition-based stats. Identities = 124/1026 (12%), Positives = 254/1026 (24%), Gaps = 154/1026 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPII--------KSLGDVV---EEKFTADLL 94 V T++A L + +T+ P GD F L+ Sbjct: 62 QVLGLTFTRKAAAALAQRIRQRLALLTTLRPRTGSGRSPADLPAGDPDVSTYHAFGGRLI 121 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLP----DIIKDLYPESPLSLPISPANAIW--- 147 + + R+L + R + D++ DL P+ ++ ++A+ Sbjct: 122 ADFGPLAGIEPAARVLTPTGAWQLARRVVGRWDGDLLTDLGPDQVTERLLAISSALADHL 181 Query: 148 -----LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD--FLKIASKYWTERLV 200 L+ LA ++D + + AL + D ++ + Sbjct: 182 TDVDLLSDELATVLDRLRSAPPGPRQRAALHSG-LAGPVKRLQDRQWILPLVAAYVRAKR 240 Query: 201 ELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTV------ 249 + EH M+ +++ + A ++ ++ Sbjct: 241 DRGVVDFADQMQIAATLVREHPRIGEAMRERYRVVLLDEYQDTGHAQRVILRSLFGDRDG 300 Query: 250 -------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 G V D W + + ++ ++ S+ LL Sbjct: 301 AGRAGGHGQARWGHPVTAVGDPVQSIYSWRGASASNLPRFVTDFPLASGRPSSIRSLLTS 360 Query: 303 LDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + VS + GR++ + + P R L Sbjct: 361 FRNPGAVLALANEVSRPVRQGGRAVEVGELRPTPAADPGRLRYGLFGTAEQENAWL---- 416 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDI 415 A +IA R +LDE + A++ R+ L G+ +++ Sbjct: 417 ----------AEAIAGYWRDALDEGGAGATPPTTAVLVRRRSDMADTADALRAAGLPVEV 466 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L + L + L + A L+ + G + A+ Sbjct: 467 VGLGGLLDEPEVADLVATLRVLVDPTAGPAAMRLLTGARWQLGAADLEALAARARELAGP 526 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNT--HVPHWQSRLSEEDKELAVLLVDHILQCITP 533 R + R A + W + D A + + Sbjct: 527 ARPADGHGAGGPADPTAVVRSAVAAALPVEDIDTWSMVDAAGDLGPAQAYSAAGHRRLVR 586 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + N + D + + + Sbjct: 587 FAAHLARLRA-RLNQPLPDLIADLERACH-----LDVESLVAGTGRAHLDAFAAVVAEVA 640 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 A +E++D DG T + S + +L ++ L ++ + + L EGV Sbjct: 641 ATGAGPAELLEYLDAAAEREDGLTPGEVPQPSGRVQVLTVHAAKGLEWEIVAVPHLTEGV 700 Query: 654 WPKNTAKNPF-----LSRVMQSDLNLKT-------------------------AEKYIGQ 683 +P L ++ D + + + Sbjct: 701 FPITRGSTWLGDPAQLPPQLRGDRDDLPQLAWPAGGTQKDLADALAAHAAEFGELRLTEE 760 Query: 684 AAHDFEMANGTRHLIYTRSLREN---NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 + + P S +L+ L + + Sbjct: 761 RRLLYVALTRAERTLLFSGHHWGTGLAKPAGPSPFLEECAALARPFAEPDEWAPPPATDE 820 Query: 741 WTRKLDYTTKQP-------------------------HYKRPKPFPPLEAQPRTYSFSEI 775 + L T P P+P + Sbjct: 821 GQQLLPRTAVWPIDPLGPRRPHVQVGADRVLQALADLAAAEPEPVEDRPGTADEVDTGDP 880 Query: 776 KQLINDPYAVYARRILKLDFIPHFKK------------DPDRTDRGTLFHNIITELIKKR 823 D + A R + + + D + + R Sbjct: 881 FGWAADVTTLLAERSDRGREVHEVELPGTITVTSLVELADDPAELARRLTRPVPTESSGR 940 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHKISHSFLEHEEKIQSSIEK 880 +++ T L + + + P W + FL + Sbjct: 941 LSRGTDFHAWLEHRFRGEALLELSDLPGAGDAWVGADPEIEDLKRRFLASPWADR---VP 997 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 I V +P I +G+ G D I G + + D+KTG +P +E A QL+ Sbjct: 998 IDVEVPFASRIAGLGV--RGRVDAIFADADGGITVVDWKTGHSPLREDAA---AVQLACY 1052 Query: 941 AAALKA 946 A+ Sbjct: 1053 RLAIAQ 1058 >gi|6626266|gb|AAF19531.1| hypothetical protein [Bradyrhizobium japonicum] Length = 231 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 11/201 (5%) Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 E ++ + + +++ I + HF P +W F +I+ F E E + Sbjct: 28 EFTERYATRLPDDPARVLRAIGEKHFAPLMERPEARALWWPRFQRIARWFSEWETARRDV 87 Query: 878 IEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 +E I +++I L+ ADRI+ + G I DYKTG P + + + Sbjct: 88 VEAITAETRGEISITLDNERSFRLSARADRIERRQGGGYAILDYKTGQPPTGKQVRMGLS 147 Query: 935 PQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDC-------ITNDKKKYSADEL 986 PQL+LEAA L+ G F ID V+ L Y+RL + D Sbjct: 148 PQLTLEAAILREGGFPDIDAGSSVSQLVYVRLSGNNPPGEERILELKYKQGDEPQPPDIA 207 Query: 987 SEKSLKNLIEIVTLLQNGEQP 1007 + ++ L ++ + +P Sbjct: 208 AAEARAKLEALIRAFETRTRP 228 Score = 39.9 bits (91), Expect = 2.6, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 30/99 (30%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 + T W L L ++ +W + +F + + + + + + LM Sbjct: 1 MVTRGVDWSALDGLVPDQLDRYWQHSLEFTERYATRLPDDPARVLRAIGEKHFAPLMERP 60 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + + I + A ++ + G I Sbjct: 61 EARALWWPRFQRIARWFSEWETARRDVVEAITAETRGEI 99 >gi|315453532|ref|YP_004073802.1| hypothetical protein HFELIS_11280 [Helicobacter felis ATCC 49179] gi|315132584|emb|CBY83212.1| putative hypothetical protein [Helicobacter felis ATCC 49179] Length = 768 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 81/594 (13%), Positives = 177/594 (29%), Gaps = 67/594 (11%) Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + + PL ++ + + L R + + +D +L + Sbjct: 226 ALSRGENPIVQATPQTPLCADHISIYAFNQRLDQVGLALQRVQEWLSEGLDPSTLAIITP 285 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + + + L KT + + + + Sbjct: 286 SAEILSALKLLDLGHNLNFARG--ENVQEVFAPLFKDLEALKTTLQTCQTSNPLITLQEH 343 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW--IDIITRLID 614 T L+ L + ET I +N ++ +D++ + Sbjct: 344 TQALLEKYTA---------------HKLQDFHQEFFETYHAIASNLQQYSVVDLLELYMR 388 Query: 615 G-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + V+ + +L LE R L+F+ +++ N+ + P + FL+ ++ L Sbjct: 389 NLQEVRLDHTTGGKVKVLDVLECRGLHFERIVILDFNDRLVPSVQDSDLFLNTFTRTALG 448 Query: 674 LKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + T E H + T H+ S +N IP+ L L + Sbjct: 449 IPTLEDRENLQKHYYYQLLKNTSHVDIAYSCAQNAIPSKM------LAELSLETPLPEKE 502 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + R ++ P +S ++IK + Y + + K Sbjct: 503 ENEFVIFPQARTWEFV--------PDKIIERIPSDFKFSATKIKDFMACKRRFYLQYLAK 554 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN--HLMKQIIDSHFEKENLPP 850 L P + G+L H I+ +NT + E Sbjct: 555 LTPAPQESF-----NMGSLLHTILEAYYSGSHYQNTHAPITFDSFLKTA-QSLESYANLN 608 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 + + + + F E + + + + +I G +G DRID + Sbjct: 609 ALQRLELEVVAQKLAPFFACETGKLARAQVVACEQRFETSI--GGFSFSGIIDRIDQNSA 666 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G D+ DYK + ++ QL++ A ++ + ++++ LK+ Sbjct: 667 GGYDLLDYK--FKSALKPQEEGY--QLAIYALGAQSLGY------TPEHIYFYDLKEG-- 714 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 +K E E L+ L + + + Y Sbjct: 715 ---CLLEKSLSELQEDQEGLLEVLESCQQTIDFDQTE-------DRSACTYCAY 758 >gi|229490998|ref|ZP_04384831.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] gi|229322114|gb|EEN87902.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121] Length = 1130 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 119/1042 (11%), Positives = 264/1042 (25%), Gaps = 149/1042 (14%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83 + +V ++P V T++A Q+L S + + + +L + G Sbjct: 56 MAARVVWLVANGFVDPEA---VLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGG 112 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 V + L + L P+ LL L + + DL Sbjct: 113 VRSRILAGEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLD 172 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----- 186 + + LA LA+ + E + +L L + Sbjct: 173 TDKNPGSITET--VLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELL 230 Query: 187 ----------FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231 L E L A R +EH + ++ Sbjct: 231 NYLDVQHKRIELLPLVARLGETLRREGALDFGSQMSLSARVASEHPEVGQTERERFRVVL 290 Query: 232 IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + A L+S++ + D W + + +++ + Sbjct: 291 LDEYQDTGHAQRVLLSSLFGGGADGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 350 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E ++ S + R + +S P L + Sbjct: 351 NGKPAPTLELLTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDL 410 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 ++ + E I+ + D +A++ A + L Sbjct: 411 EQERQWVA------------EKIAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSK 458 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ +++ L T + + ++L + A L+ A++ K L+ Sbjct: 459 GLPVEVVGLGGLLHTPEVADVIAMLRVVADPLAGSAAVRLLTG--ARWQIGAKDLAALSQ 516 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 +A+ + + + + + S D A Sbjct: 517 RSRELAISAGYGTAGAVTDAEALTSAVQDALPGENAEQAGLVDSISDPGPAERYSALGYT 576 Query: 530 CITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 I + + G + + + + E + + Sbjct: 577 RINAIAAELASLRERIGQPLTELVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADV 636 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + + + ++ G T + IL ++ L ++ + + Sbjct: 637 VANYATRPTANLPGMLAFFAAAEQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIP 696 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------------------- 678 +++GV+P +TA +L + + +L+ Sbjct: 697 HVSDGVFPSSTASGSWLGALAELPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAIT 756 Query: 679 --------KYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL---VLG 723 + + + F +A + P S +L L Sbjct: 757 AHKKALSNRRLDEDRRLFYVALTRTERALFISAHHWAESGSEPKGPSEFLDELHQMVTAE 816 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------RPKPFPPLEAQPRTYSFSEIK 776 ++ + +W + T+ P P P + S + Sbjct: 817 NDADEEDSRGAIGVVEEWAPAPEPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLS 876 Query: 777 QLINDPYA--------------------VYARRILKLDFIPH------------FKKDPD 804 L + P + A R + + D Sbjct: 877 ALASLPQDSQEAEEPEDDPENWASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKAD 936 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHLFH 861 + + + T + ++ + + P Sbjct: 937 PDELAARLRRPLPYPPNPLARRGTAFHAWIERRFGATRLLDLDELPGAADTGAGPETDLV 996 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 K+ +FL +S I V +P + +I L G D + G + D+KTG Sbjct: 997 KLQDAFLRSPWANRS---PIEVEVPFETSIAGT--VLRGRIDAVFADPDGGWTVIDWKTG 1051 Query: 922 DNPKKETAQKLIDPQLSLEAAA 943 P + + QL+ A Sbjct: 1052 AEPSAAN-EDAVVMQLAAYRVA 1072 >gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1] Length = 1072 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + I Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWAKECQTCADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTSDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFYHVGANETISAEPLLDADQVAAILTA 1058 >gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] Length = 1075 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 98/879 (11%), Positives = 212/879 (24%), Gaps = 103/879 (11%) Query: 169 LHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--- 224 L L + W+ + + E + +I ++A + ++ Sbjct: 293 LGELDERE--TQWVTTLQGAFQWVEQRLKEIKQQARVLDFNDLEIYALKALEDPAVRDYY 350 Query: 225 -GTKGPIIIAGSTGSIPATARLMSTV-ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +I + P +L+ + + + D + + Sbjct: 351 KERWRAYLIDEFQDTNPTQGKLLEALTGRSEEQSKLTIVGDDKQSIYGFRRADVEVFRAW 410 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 S S + + + ++ + Sbjct: 411 RSQLNNGVALTQSFRTHESLVKNINTVFRPVLGELHQDLDAHRQEAPHDPLHLEIYRFAP 470 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV 402 + +A + + +E + A R K A+++ + Sbjct: 471 KEKMAIAEARKVEAQQIAQLIYEMLSQEMLVWDKATRKLRAIAPKDIAILSRTWDPLDIY 530 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 L ++ I S+G L T + SLL I ND +A+ +++ P Sbjct: 531 SQALAQWQIPFLQSSGGNLLDTPEALDGLSLLQFIANPNDDLALVAVLRSPFLTLSDRLL 590 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 Y R + K + D + Q+ T + ++ + Sbjct: 591 YELR-------PQKKDKKWWSCLKD-----SQQPEVQQRVTILKQLLNKRDIFTPSQLLQ 638 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L D + + + + + Q F+ G Sbjct: 639 LADQLTGYSAVITNLPQAERRLADWRGFLELLRHLE---QGTGDVLSVVRRLQRFQRHGV 695 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + S + +A + ++ ++ T K SS L FD Sbjct: 696 KIPRPPLEAENAVSLMTIHAAKGLEWSVVIVPDLTRKLSNTSSSIL------------FD 743 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTR 701 L + K+ + +TAE + R LI T Sbjct: 744 PEFGVALKQRDDQGKLQKSVLFQLLEGHQKERETAEAK----RVLYVALTRARDRLILTT 799 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + + L D +L + + + P Sbjct: 800 PKEKGGGLDLLQPGL---EDFAIKDISPDLYPPAEPWCEGDESSKPQQPPQLLLEPA--- 853 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + + + P Y +I++ + + + G+L H + + + Sbjct: 854 --RSYGLELPMTALTTYARCPKKFYFEQIIRHPGLTEGESNYGAA-IGSLTHTALEKDYQ 910 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 N + LPP L Sbjct: 911 TVEQLNFHN-------------QDLKLPPDKVQEALDLAQTF--------RTDPVFAAVQ 949 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + + + L G AD + G + D KT P + QL A Sbjct: 950 AGEKEIALELRQNQLVLNGRADLV-----GTNFVLDVKTDSKPNPIEHR----FQLWAYA 1000 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + A + Y+R +Q + AD L ++ + Sbjct: 1001 RAAEK---------PTAYIAYLRQRQLYTFSPTDLKSIDQEADILMQQIAQR-------- 1043 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLARVAEWREEYDIS 1040 + + Y+ + + ++S Sbjct: 1044 -----DYT--PKPHSDHCSYCPYNWICDAGKSALAGELS 1075 >gi|319757985|gb|ADV69927.1| ATP-dependent nuclease, subunit B [Streptococcus suis JS14] Length = 1088 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 108/939 (11%), Positives = 251/939 (26%), Gaps = 123/939 (13%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L + ++ DL A+ + L Sbjct: 97 FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 T+ L + E L + K + ++ G + L+S + Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + ++ A + E + + + Q+ Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------- 259 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 I K + + +++ P+ +K + L E N++E Sbjct: 260 ----------QEPVLDSIGKFSKNMEAYYDYSGTMIDLTPPDQEK----IQLWEVVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R + + K L+ D + + ++ I +S Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L + + EL D+ Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + + D + L I++ + L + Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + + ++ E+ K+ + L + K +++ Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + G+ + +PK L+ Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595 Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715 +L + E A + N L+ + N S + Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655 Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743 ++ L +G + + GQ + R Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788 L + + P + ++ + S S + N+ Y + R Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845 +L+L P G H I ++ + + + +++ ++ F Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897 N + KI+ S + + +I + + + +H Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890 Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + G DR+D L+ + V + DYK+ + + PQL AAL+ + + Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V Y+ L+ T + ++ + K L Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987 >gi|253751553|ref|YP_003024694.1| ATP-dependent exonuclease subunit B [Streptococcus suis SC84] gi|251815842|emb|CAZ51450.1| putative ATP-dependent exonuclease subunit B [Streptococcus suis SC84] Length = 1088 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 107/939 (11%), Positives = 246/939 (26%), Gaps = 123/939 (13%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L + ++ DL A+ + L Sbjct: 97 FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 T+ L + E L + K + ++ G + L+S + Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + ++ A + E + + + Q+ Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------Q 260 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 L ++ S D + + L E N++E Sbjct: 261 EPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ---------------EKIQLWEVVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R + + K L+ D + + ++ I +S Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L + + EL D+ Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + + D + L I++ + L + Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + + ++ E+ K+ + L + K +++ Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + G+ + +PK L+ Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595 Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715 +L + E A + N L+ + N S + Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655 Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743 ++ L +G + + GQ + R Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788 L + + P + ++ + S S + N+ Y + R Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845 +L+L P G H I ++ + + + +++ ++ F Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897 N + KI+ S + + +I + + + +H Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890 Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + G DR+D L+ + V + DYK+ + + PQL AAL+ + + Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V Y+ L+ T + ++ + K L Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987 >gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1] Length = 1072 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRRGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + I Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWAKECQTCADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFYHVGANETISAEPLLDADQVAAILTA 1058 >gi|317405926|gb|EFV86205.1| hypothetical protein HMPREF0005_02666 [Achromobacter xylosoxidans C54] Length = 536 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 63/541 (11%), Positives = 148/541 (27%), Gaps = 45/541 (8%) Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + + + S W L + Sbjct: 1 RRGQVHVGAAEWRKQLAALPPLAQAWDQAMEIWTRGGARASCDVWMLRMKAALTALGFPG 60 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 L ++ ++ G +L + K + ++++ + + +P+ + S+ L Sbjct: 61 EGVLDSVGYQALGALGEALGGFSALAPAAGKLGGVAAVNLLQSVARSASFQPQRDPSARL 120 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAAH 686 +LG LE+ +D + + GL + V P + NP L + T E+ A Sbjct: 121 DVLGLLEAEGGFWDGIWILGLTDDVLPASPKPNPLLPLAVLRQAKAPRATPEREREWAEG 180 Query: 687 DFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + +I + + + S + + Sbjct: 181 IYAALCRCAPQVIVSHAHMDGERELRPSPLIAA--------------AAPTDWRPAPVAA 226 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 Q + P + +P + R L + + Sbjct: 227 VAALPQESLDDMRGPPLAADDRGGGGLDVLDTQARNPLWAFVRHRLGGRELAPYADAATV 286 Query: 806 TDRGTLFHNIITELIKKRIN-----------KNTPEINHLMKQIIDSHFEKENLPPHIDI 854 RG H + + + + + + Q D ++ P + Sbjct: 287 NVRGQFLHKALELVWGMLPDQEALHETLAQGRLPALLEQAVAQAADEELQEYA--PALKA 344 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + + ++L+ E + V + ++ + L DRID L G Sbjct: 345 LECARARTVLAAWLDMEAQRLP-FAVAQVEKNHQWRHGALHLKL--RLDRIDTLADGRNV 401 Query: 915 ITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 I DYKTG + + ++ QL A+ L + ++ +A + ++ + Sbjct: 402 IVDYKTGVAAAKPEPDWSRSRPVNVQLPFYASVLADAAGGEVAGLVLAQIHARQVAAQGL 461 Query: 971 IDCITNDKKKYSADE-------LSEKSLKNLIEIVTLLQNG-EQPFISHLRLSEKSNIQS 1022 D + A E + + + L + + +++ Sbjct: 462 ADEDLGMEGVTLAAESKYFDGLSWPEIRQRWRAAIESLADEYVAGYAANVAYRRDDLKYC 521 Query: 1023 E 1023 + Sbjct: 522 D 522 >gi|226305706|ref|YP_002765666.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] gi|226184823|dbj|BAH32927.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4] Length = 1130 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 119/1042 (11%), Positives = 262/1042 (25%), Gaps = 149/1042 (14%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGD 83 + +V ++P V T++A Q+L S + + + +L + G Sbjct: 56 MAARVVWLVANGFVDPEA---VLGLTFTRKAAQQLTSRIRKRLARLAGSDVLRALDPTGG 112 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 V + L + L P+ LL L + + DL Sbjct: 113 VRSRILAGEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQVAHRVVSGWDSDLD 172 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----- 186 + + LA LA+ + E + +L L + Sbjct: 173 TDKNPGSITET--VLALAGQLAEHLVDPEQLLEAHTELDKLIHTLPAGPKQRGGPSKELL 230 Query: 187 ----------FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPII 231 L E L A R +EH + ++ Sbjct: 231 NYLDVQHKRIELLPLVARLAETLRREGALDFGSQMSLSARVASEHPEVGQTERERFRVVL 290 Query: 232 IAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + A L+S++ + D W + + +++ + Sbjct: 291 LDEYQDTGHAQRVLLSSLFGGGTDGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 350 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E ++ S + R + +S P L + Sbjct: 351 NGKPAPTLELLTSWRNPPEALELANLSSAPLRRRGVAVSTLRARPGAVAGDVRLALLGDV 410 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 ++ + E I+ + D +A++ A + L Sbjct: 411 EQERQWVA------------EKIAEEYEAARAEDRPTPTAAVLIRRNADAAPLAEALRSK 458 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ +++ L T + + ++L + A L+ A++ K L+ Sbjct: 459 GLPVEVVGLGGLLHTPEVADVIAMLRVVADPLAGSAAVRLLTG--ARWQIGAKDLAALSQ 516 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 +A+ + + + + + S D A Sbjct: 517 RSRELAISAGYGTAGAVTDAEALTSAVHDALPGENAEQAGLVDSISDPGPAERYSALGYT 576 Query: 530 CITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 I + + G + + + + E + + Sbjct: 577 RINAIAAELASLRERIGQPLTELVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADV 636 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + + + ++ G T + IL ++ L ++ + + Sbjct: 637 VANYATRPTANLTGMLAFFAAAEQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIP 696 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------------------------- 678 +++GV+P +TA +L + + +L+ Sbjct: 697 HVSDGVFPSSTASGSWLGALAELPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAIT 756 Query: 679 --------KYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL---VLG 723 + + + F +A P S +L L Sbjct: 757 AHKKALSNRRLDEDRRLFYVALTRTERALFISAHHWAESGAEPKGPSEFLDELHQMVTAD 816 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-------RPKPFPPLEAQPRTYSFSEIK 776 ++ + +W + T+ P P P + S + Sbjct: 817 NDAGEEDSRGAIGVVEEWAPAPEPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLS 876 Query: 777 QLINDPYAVY--------------------ARRILKLDFIPH------------FKKDPD 804 L + P A R + + D Sbjct: 877 ALASLPQDSEEAEEPEDDPENWASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKAD 936 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFH 861 + + + T + ++ + + P Sbjct: 937 PDELAARLRRPLPYPPNPLARRGTAFHAWIERRFGATRLLDLDELPGAADTGAGPETDLV 996 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 K+ +FL +S I V +P + +I L G D + G + D+KTG Sbjct: 997 KLQDAFLRSPWANRS---PIEVEVPFETSIAGT--VLRGRIDAVFADPDGGWTVIDWKTG 1051 Query: 922 DNPKKETAQKLIDPQLSLEAAA 943 P + + QL+ A Sbjct: 1052 AEPSTAN-EDAVVMQLAAYRVA 1072 >gi|146318408|ref|YP_001198120.1| ATP-dependent nuclease, subunit B [Streptococcus suis 05ZYH33] gi|146320604|ref|YP_001200315.1| ATP-dependent nuclease, subunit B [Streptococcus suis 98HAH33] gi|253753454|ref|YP_003026595.1| ATP-dependent exonuclease subunit B [Streptococcus suis P1/7] gi|251764626|sp|A4W0M6|ADDB_STRS2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|251764629|sp|A4VUD1|ADDB_STRSY RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|145689214|gb|ABP89720.1| ATP-dependent nuclease, subunit B [Streptococcus suis 05ZYH33] gi|145691410|gb|ABP91915.1| ATP-dependent nuclease, subunit B [Streptococcus suis 98HAH33] gi|251819700|emb|CAR45512.1| putative ATP-dependent exonuclease subunit B [Streptococcus suis P1/7] gi|292558200|gb|ADE31201.1| putative exonuclease RexB [Streptococcus suis GZ1] Length = 1088 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 108/939 (11%), Positives = 247/939 (26%), Gaps = 123/939 (13%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L + ++ DL A+ + L Sbjct: 97 FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 T+ L + E L + K + ++ G + L+S + Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + +L I ++ T + + L L + + Sbjct: 210 NE--RVSEIL--------------IGVYASKKAVQATYAEGNVYQANVDFLRQLSAQFQT 253 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + D S ++ + L E N++E Sbjct: 254 KATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ--------EKIQLWEVVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R + + K L+ D + + ++ I +S Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L + + EL D+ Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + + D + L I++ + L + Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + + ++ E+ K+ + L + K +++ Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + G+ + +PK L+ Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595 Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715 +L + E A + N L+ + N S + Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655 Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743 ++ L +G + + GQ + R Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788 L + + P + ++ + S S + N+ Y + R Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFE-K 845 +L+L P G H I ++ + + + +++ ++ F Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIH 897 N + KI+ S + + +I + + + +H Sbjct: 834 YNQDADARYTE-EVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVH 890 Query: 898 LTGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + G DR+D L+ + V + DYK+ + + PQL AAL+ + + Sbjct: 891 VNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDK 948 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V Y+ L+ T + ++ + K L Sbjct: 949 PVFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987 >gi|317013801|gb|ADU81237.1| hypothetical protein HPGAM_01955 [Helicobacter pylori Gambia94/24] Length = 778 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 63/397 (15%), Positives = 135/397 (34%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + ++ + ++S S + + Sbjct: 494 DLHTEPIKDAYTLFETSPIKEYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +K + + ++ Sbjct: 540 TCKRRFYYHYIKRFKETPKDE---SNSAVGSLIHELLKEAYE--KDKTPHALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + AI+ G+ Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYIKEKERFNAKIKILDLEKSFETAIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEIVLLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISTDYQMAIYARAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + + F+ L++ ++ + Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGELLEEDELILQAK 740 >gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] Length = 1211 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 112/917 (12%), Positives = 243/917 (26%), Gaps = 96/917 (10%) Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 +L ++RL L ++++ + + ++ + L + + Sbjct: 279 AESLPDLAAAADPLERLALLKQIVM---------TQAGGRRASVATKVVTGELPDLDERV 329 Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-PVGYQ 211 A+ + +ET E + L ALK + L+ AD L+ R L+ + Sbjct: 330 AEAQEYVETAE---DRLAALKLFRASRAALVIADALERDYALLKRRRGRLDFTDLIARTA 386 Query: 212 IALMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVL 259 L R+EA + I+I + + P ++M + + H V Sbjct: 387 DLLTRSEAASWVHYKLDQGIDHILIDEAQDTSPRQWQVMRQLVDEFFVGRSTHNRTRTVF 446 Query: 260 PGLDCHIPTAIWNTITEKSTNITSS---NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 D + + ++ +++ L + + V Sbjct: 447 AVGDEKQSIYSFQGASPHMFDLERRVVKAKADEAGLKFTPVSLNQSFRTLETVLGAVDQV 506 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE------ 370 R + + P TS ++ + L P I + S V + +E Sbjct: 507 FEAPENRRGLSTGGERPTHTSARQDGEGLVEIWPTI-RAESTVEPDNWLDPMDEEPKSSP 565 Query: 371 ----AISIAIALRMSL------------DENKKKSALITADRNLARRVKLELTRFGINID 414 A IA + L + L+ N + L GI++ Sbjct: 566 AYRLAQRIADQIAEWLGDPIVEKGRIRPLDPGDVMILVRKRTNFIPAMAAALRERGISVA 625 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + + ++ + L +L D +++A L+K PL +F E Sbjct: 626 GADRLTITEHIAVQDLIALGRVAANFEDDLSLAALLKSPLFEFTDDELMALALSRGPLEH 685 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 G + + + + + D+ + + + Sbjct: 686 LSAGLRKLGGEEGPGRVPDWFPDGEPAARLLEKAHHAIERLDELRNRTGFESVFTFYARI 745 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + T + ++ L E + ++ E Sbjct: 746 --LGPEGGRSKLMARLGRDTADVIDAFLDLALSEDTAGVSGLDAFLSDLEAAPPEIKREM 803 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 I L + G+ SRL+ ++ + ++ Sbjct: 804 EGGRGEVRIMTTHASKGLEAPVVFLVDPGSAP---FHGSHGSRLMRWEEMPRLLADQAPG 860 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 A + + + ++ + + + P+ + Sbjct: 861 FLWRAAKEVENSAIAALREIEKQRAEEEYRRLLYVGMTRAAERLVICGMAGTRGPSEEAW 920 Query: 715 WLQRLLVLGGTDFF-------------------DNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + L +R R LD + + Sbjct: 921 REKVESALKPHAEEITDMAGDPVCWRIGSRRMGKPETERPDAANLAVRALDLSRLEEEVA 980 Query: 756 RPKPFPPLEA----QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 P+P P A + S +++ N YA +L P RG + Sbjct: 981 PPRPLTPSSAGAAFEADELESSVLEEQ-NTAETAYASPVLGTAATPSL-----GIQRGLV 1034 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H ++ L + +++ + + ++ Sbjct: 1035 VHRLLQHLPTLASEERERAAEAYVRRALPQVGDTH------RKQLLASVQRLMDDPA--Y 1086 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETA 929 I + + V I + I + G DR+ + V I DYKT P Sbjct: 1087 AAIFAEGSRAEVAIAGTVRIGRTNYAVNGTIDRLVVT-DRDVLIVDYKTNRPPPQTLAEV 1145 Query: 930 QKLIDPQLSLEAAALKA 946 K QL++ A + Sbjct: 1146 PKDYVRQLAIYRALVMQ 1162 >gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1] Length = 1072 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGTHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|308177921|ref|YP_003917327.1| ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] Length = 1105 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 100/888 (11%), Positives = 231/888 (26%), Gaps = 145/888 (16%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTG 237 + + ++ + L R A + + +++ Sbjct: 225 ASRATIAELAEEYASEKKRLGVMDYGDLVAHAARIAQEVPAAALAERASHKVVLLDEFQD 284 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 + A L S + G V D + + + + Sbjct: 285 TSHAQMVLFSQLYG--QGHPVTAVGDPNQSIYGFRGASAGQLFRFPEVFPING------- 335 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 + + + +++ + + + + ++ + Sbjct: 336 ------ENRNDVAHVKHLTIAWRNTVNVLAAANSITAAAPQHQGPVSVKPLDSSAHAKPG 389 Query: 358 DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415 V L REEA +IA + + K SA+++ +R + L GI + Sbjct: 390 RVVLNRCATVREEAEAIAEMIAAENRKAAEPKTSAVLSRNRTQLSIMGEVLAERGIKYQL 449 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L +T + L S L+ + + ++ + G + + Sbjct: 450 VGLSGLLSTPELTDLVSYLHVLVDPLRSDKLMRILAGARWRLGTADLMAFADWSRQLERR 509 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL- 534 S D + + + + + S + D + I+P Sbjct: 510 RAHGLQSTPAADESASSDEDVLKEAARAELNDAASLVEALDFLPKEGWTSSDGRTISPAG 569 Query: 535 -VTYKTNKNSTCGNLSIS-DWTKLTVTCLQNVCLDEHRKLPNLWFEEE------GKTLSS 586 ++ G ++ D + + + + W + Sbjct: 570 YERLAALRDELAGLRLLANDDLETLIRETERAMNLDIEVAARPWISRDKARANLDAFADV 629 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + A + W++ G + + S + +L S+ L +D + + Sbjct: 630 VREYCRNAPRVELAGFLMWLEQAAEKEKGLPLPSEDADPSAVQLLTVHASKGLEWDIVAV 689 Query: 647 GGLNEGVWP-----KNTAKNPFLSRVMQSDLNLKT-----------------------AE 678 LN+GV+P + T+ + L ++ D + Sbjct: 690 MTLNDGVFPGSKSDRWTSGDKALPWELRGDHKDLPQWDTDQPTLKELLEAESIFKDRVED 749 Query: 679 KYIGQAAHDFEMANGTRHLIYTRS----LRENNIPTIASRW---LQRLLVLGGTDFFDNL 731 +I + +A + S PT S + L L + Sbjct: 750 HHIAEERRLAYVAVTRAKSLLICSSSVWTSTRTKPTAPSEFFNCLVPLAEGENPQAEIGV 809 Query: 732 KKRGQCYLDW----TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN------- 780 + + L+ + P ++ P YS E+ + Sbjct: 810 WVEDEDAPEQNPSTLTPLEAVWPYDPLEGPVITGGVQKTPHPYSRREVIAEMAKNLEVVS 869 Query: 781 ---------------------DPYAVYARRILKLDFIPHFKKDP---------------- 803 A R +++ H + Sbjct: 870 QEHEPLTSFGQQWAEEAGKLLGQREFLAGRERRIEAPEHVRASLFVELAEDPVEVLENLR 929 Query: 804 --------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 RGT FH I E +K + ++ +D + Sbjct: 930 RPVPRRPGLAARRGTAFHAWIEEFYEKTSMLDLGDLQEPADGYLDEALD----------- 978 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 + +FL E S ++ +V +P + + + + G D + ++ G + Sbjct: 979 ----LESMKEAFLSSEW---SKLQPAYVEVPLETRV--GPVAVRGRIDAVFQMEDGTWLM 1029 Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 D+KTG P + + + QL++ I ++ FY Sbjct: 1030 LDWKTGRVPSGKDLKSKL-VQLAVYRLGWSR--LHGIPLEEIKAAFYY 1074 >gi|147921573|ref|YP_684610.1| putative ATP-dependent DNA helicase [uncultured methanogenic archaeon RC-I] gi|56295579|emb|CAH04821.1| ATP-dependent DNA helicase [uncultured archaeon] gi|110620006|emb|CAJ35284.1| putative ATP-dependent DNA helicase [uncultured methanogenic archaeon RC-I] Length = 1075 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 117/1007 (11%), Positives = 267/1007 (26%), Gaps = 192/1007 (19%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + + ++ A ++ E ++ P + F D+L++ + + Sbjct: 61 RLLMLTFSRDAAAHMKEEIEKVV-------PEARDATANTFHAFCLDILVAGESDTGIDE 113 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK------NLADIIDII 159 RLL+ I K + L S+ + + A L + I Sbjct: 114 RYRLLDEKDGGFILC-KEAGVPPRLASHYITSIQRAKDMGLTWADYEGYLGQLEASMREI 172 Query: 160 E-TEEKKWEDLHA--------LKNEKYGMWWLLAADFLKIASKY------------WTER 198 E+ + A K+++ +FL++ +Y + + Sbjct: 173 CPEEDIESAAGAATVRLRTEQFKDKQAREEKKKITEFLELFEEYKGYLKFLEAWKKYEQI 232 Query: 199 LVELNASSPVGYQIALMRAEAEH---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + + ++ +I+ + L+ +A G Sbjct: 233 KAQKLLLDYADMIRLTIDYARARGHEVLADKFDYVIVDEFQDTNRQQYELLKILAGDGKG 292 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF-LDIKREDVKRLG 314 V+ D + + ++ + +T + D L ++ Sbjct: 293 ITVV--GDVNQSIYGFRGAYPENIDTFKEEYRPATFDLTENYRSTDSILRTAYRLIRNNY 350 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +++ + V L++ N+ E+A I Sbjct: 351 QKADDARLLQAFDHREGTR-------------------------VMLLKTLNQNEQARRI 385 Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + L E ++ A++ + R ++ L + I +S + Sbjct: 386 VEEIDRLLAEGVAPEEIAVLFRSYSSLRPIEAALKQRAIPYQVSTTTGFLKRPEIRTALA 445 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 ++ + ++ P R L + I D+ L Sbjct: 446 ----------YLYVLASLEMP------------RHGADQLWYKLLQYRYGVSIRDVHLLS 483 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 LSEE + LVD I++ + + D Sbjct: 484 AAAKRDSIQGVLTGSLPRGLSEEGRVKIRHLVDRIME--------LRASTNKELPDLLLD 535 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 +L+ + + +L + + + F + T E+++++ + Sbjct: 536 IYELSGLSREFTHDNSSESKTSLLNLKALHDIVTGFQDLYGTDLQGFI---EYVELLDEI 592 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-----NPFLSRV 667 D + P+ EK+ + + ++ L + + + L + +P + L+ Sbjct: 593 GDDGEL-PRQEKAGGVVLKTCHGAKGLEYSHVFVVDLAKDKFPLSRGGREPLVPDQLNDR 651 Query: 668 MQSDLNLKTAEKYIGQ------------AAHDFEMANGTR-HLIYTRSLRENNIPTIASR 714 +L AE + + L S Sbjct: 652 YADVFSLPEAEIEEALKKRKQDFKLKEERRLAYVAFTRAKDRLYLCYPASYGESERPPSM 711 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTR------------------------------- 743 ++ G D Sbjct: 712 FIAEACYNSGELHPDMELVEDAEEKAAVATRDSDLDRKKNEIKRQILSTIDSEPDLALYN 771 Query: 744 -KLDYTTKQPHYKRPKPFPPLEAQP----------------------RTYSFSEIKQLIN 780 L P + + S+S +K Sbjct: 772 LLLYQHLCGRPIAINCPQAAMAGEEAAVIRAELDAGIPRGMQFDPKEVRLSYSGLKTYEE 831 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P + +L + + G H + +K++I+ ++ +D Sbjct: 832 CPKKYELQYLLNIPSRTKDSEGESPLSFGNYIHKTLELAVKQQIST---------REELD 882 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 + EK +L P + + +I F + + V ++ G TG Sbjct: 883 AIAEKTSLLPDFAGVDKDKAKRIFDVF--WARNKDTIRRSVGVEQFFNFTMD--GFQFTG 938 Query: 901 FADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 DR+D L ++G +I DYKTG P E ++ Q+++ AL+ Sbjct: 939 KIDRVDQLSENGDAEIIDYKTGREPGTEDRER----QITMYMLALQR 981 >gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1] gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2] gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1] gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2] gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1] Length = 1072 Score = 142 bits (357), Expect = 4e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDTQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|294814879|ref|ZP_06773522.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327478|gb|EFG09121.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1264 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 73/604 (12%), Positives = 148/604 (24%), Gaps = 68/604 (11%) Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D L+ PL + E A GN+ +L + L Sbjct: 616 LDTGTALALLTSPLGGMDAADLRRLGRALRDEERA-AGNRVPPPSDELIARALAEPERLV 674 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + A L + L T +++ + W Sbjct: 675 THDRTYAFG----------AQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERA 724 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +L ++ E + +I + I +T+ Sbjct: 725 ALRGGAAGRNADRDLDAVCALFDTAA----RAEERTGGAGALNFLEEIDAQDIAADTLSA 780 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 781 RRSRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 840 Query: 681 IGQAA----HDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 A + A R L+ T + SR+L L V +R Sbjct: 841 GALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPKDVTGRPRRP 898 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL----INDPYAVYARRIL 791 +L TT P R + ++ + L P + Sbjct: 899 LAVAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEP 958 Query: 792 KL----------------------------------DFIPHFKKDPDRTDRGTLFHNIIT 817 + G + H ++ Sbjct: 959 THSHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVH-VLA 1017 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + + + FL + Sbjct: 1018 DEVASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHAR--AALERFLRWHVMDRGG 1075 Query: 878 IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID 934 P + +E+ + + G DR++ G V + D+KTG P + Sbjct: 1076 RTTAATEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDRH-- 1133 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 PQL++ A++ G+ +D A+ + +A L +L Sbjct: 1134 PQLAVYQLAVREGALDTLDGTGTADAPDGAEASDTGPGPGEGRPESGAAPVPGGAELVHL 1193 Query: 995 IEIV 998 + Sbjct: 1194 RQAA 1197 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 87/773 (11%), Positives = 171/773 (22%), Gaps = 59/773 (7%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A V + +++A ELR G P + Sbjct: 67 TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 124 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ + D + Sbjct: 125 VRAHQDADLFAEPLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 181 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L W AA FL L Sbjct: 182 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 237 Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 ++ L+ A + + + PA RL++ +A G ++ D Sbjct: 238 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 295 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + + + + DV L Sbjct: 296 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 341 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + + + ++ + V E ++A LR + E Sbjct: 342 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 401 Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK 439 + L+ A V+ LT G+ ++ A +PL + L + L AI Sbjct: 402 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDGADVPLRHEPAVAPLLTALRAIAT 461 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIMDLKSLVL 493 V P R + G+ + D ++V Sbjct: 462 AASTTPTGAAVPGPRHGTAPVPAPEDRTPVRSDTPPAHGDPATAAPAADSGPPDAAAVVR 521 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + + + + A + + + + +D Sbjct: 522 TGTGASAAAGDLSGPVAGEAPDTPVPAPGGGPPGDIAADAVGGTSADAAAVVRTSAETDA 581 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-------KIIETGSCIKANAIEWI 606 + + G A+ Sbjct: 582 AADGGPDRSGAGDGAGDGVSGPGARARAAVGRAWLDTGTALALLTSPLGGMDAADLRRLG 641 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + + + RL+ D G + A+ L R Sbjct: 642 RALRDEERAAGNRVPPPSDELIARALAEPERLVTHDRTYAFGAQQLGGLLRHARE-LLER 700 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 ++ L G A A A R L + L T Sbjct: 701 GGTAEDALWALWDGTGWPARLERAALR-----------GGAAGRNADRDLDAVCALFDTA 749 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + G L++ ++D + P + T S+ + Sbjct: 750 ARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRSKGLEWR 802 >gi|332975149|gb|EGK12051.1| UvrD/REP helicase [Desmospora sp. 8437] Length = 1177 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 103/892 (11%), Positives = 231/892 (25%), Gaps = 87/892 (9%) Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 ++ + ++ E N Q + EH + +++ + Sbjct: 319 LQVMEQVDARYKKKKEERNRLDFDELQFRAVTLLREHPRICRQVRSRIRYLMVDEYQDTN 378 Query: 240 PATARLMSTVANHPNGAIV----LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 A +L+ + P+G + D + T S + + Sbjct: 379 EAQKQLVDLLRPGPDGERIPGKLFVVGDPKQSIYRFRGAEVAVFGRTRDEILQSGGKEVA 438 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 L + L + P + + + + Sbjct: 439 LVDNFRSDGALVGFINGLFD-----------KLMKGAPGEANHYQPARASRPAGDGPRVE 487 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINI 413 F V AD + EA +IA + ++E AL+ + V+ L R GI Sbjct: 488 FLAVDAAGADPRKVEAAAIARRICELVEEGIPYGGIALLFQAMTHVKEVEEALIREGIPC 547 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR----AKN 469 + G L +++ + D +A+ +++ P Sbjct: 548 HVVGGSGFFAQQEIFDLLNMMRILEDPADTLAMVGVLRSPFCGVSDETLLRLAQGEGWVL 607 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 E R + LK + ++ VP + ++ + + + Sbjct: 608 TREEWVEREGLPPEERRKLKQFLHQFERYRRIKGRVPAAELLSDLLEQSGYIHVTWSTPR 667 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + T + L+ V + E + +S+ Sbjct: 668 GKQARANLDKFLQLLRQWKDVD--TTSLRSILEKVERLTEMEDRETEAPVEAEDGNSVRL 725 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL---GTLESRLLNFDTLIL 646 + ++ + D+ + + ++ + L + + ++ Sbjct: 726 MSVHQSKGLEFPVVFVPDLARKPLIDVPDFKLDREAGLVVRLVDESGEKRDPFRWQRVME 785 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 +R Q + E++ G + ++ T L + Sbjct: 786 RERELSREESVRLFYVATTRAEQRLILSGVPEEHKGLQKGEELLSANTWSKWLDGVLGFH 845 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--------- 757 I R + L + P Sbjct: 846 RIDWE--RGIWNFADGNSGVAVRKCGDSDFKERSKLSPLSDGLPESSLPSPPESSPFLEK 903 Query: 758 --KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-------------D 802 P E S +++ L P Y R+ + + + Sbjct: 904 MLAPRGFTERDRLEVSVTDLVTLTGCPRRYYFERVAGMPAMEEGEPFSPASSGGEAEGPV 963 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 D +G + H ++ + + E+ +P + Sbjct: 964 LDPRIKGQIVHRLLEDC------PDPRSAEEDWTARCFEVLEEWRVPGELQSQALEEIRP 1017 Query: 863 ISHSFLEH----EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 + S+L E++ + ++ + + + G DRI G ++ DY Sbjct: 1018 LLESYLNSRFYLEQERLAGLK---NERRFIRRSDGLEVE--GVLDRIHCTPDGVWELVDY 1072 Query: 919 KTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 KT + E + PQL L A A + + LK + Sbjct: 1073 KTNDISEERVEEVAQEYLPQLQLYALAAREEW-----GIQAGRAILFFLKPGRCV----- 1122 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + E EK+ + L E LLQ G++ LR + ++ ++ Sbjct: 1123 --EYRTDREWMEKAEETLRESARLLQQGQEMEDFPLRPGRR-CSYCDFRNIC 1171 >gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 1048 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 95/786 (12%), Positives = 213/786 (27%), Gaps = 77/786 (9%) Query: 171 ALKNEKYGMWWLLA--ADFLKIASKYWTERLVELNASSPVG---YQIALMRAEAEHLMK- 224 L K + + + L E + A + A+ L Sbjct: 206 DLNERKLREELRKLEQLKAAARSFDDYQQLLKERGRYDFADMILWCSAAFKQNADLLATY 265 Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 +++ + + L+ +A++ + + D + + ++ Sbjct: 266 QERYLYLLVDEFQDTSGSQFELLMQLADYWDAPNLFVVGDDDQSIFRFQGASVENIRRFV 325 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 Y + L + + + + + GR+ + M Sbjct: 326 ER--------YRPSLTTVTLTDNHRSSQLILDGAGALIGRNQ--ERLSDEKQLIAMNPEV 375 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITADRNLARR 401 + P L E ++IA + LD ++ A+I + + + Sbjct: 376 AALPEPP---------QLEGYATLAHETVAIANRIGALLDAGVLPEQIAVIYRNHSQSEE 426 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + LT G+ + + L ++L + + + + + Sbjct: 427 IIRYLTARGVAVQTRRRADILQEPLILKLMNVLRYLATELERPHSGERLLFEILHEPWFG 486 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 +A + + + + + Sbjct: 487 VPPLALARLSVEIARQRTEKRPSYW--------------REQLPLRGMDKGQQALFPASD 532 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L H+ Q + + + + Q + E L Sbjct: 533 DL--HLRQAGETIEELLRDAATMTLQELLHHVITRLGILAQALSAHERVWHLEL------ 584 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE---TVKPKIEKSSTLFILGTLESRL 638 L++LF + E + + E + ++ + V+ + + L S+ Sbjct: 585 --LNTLFDFVREETAKQPLSLPELLAMLADMQRQGISLAVEKLSYTGAGVNFLTAHGSKG 642 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L FD + + G GVW + ++N S +E+ + M + L+ Sbjct: 643 LQFDHVFMLGCTRGVW-DSASRNRTYSMPPTIWSGPAGSEEEESRRLFYVAMTRARKQLV 701 Query: 699 YTRSLRENN-IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKR 756 + R+N SR++ L GG ++ + L + P Sbjct: 702 ISWPERDNKEKELEKSRFVAELAESGGGSIRQHVLSDDELLAFGNAVLQALPARLPAELI 761 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 F Q + S + + + P + Y +L++ G+ H+ + Sbjct: 762 DDAFVDSLLQKYSLSVTHLNSYLRCPLSFYFNTLLRVPAPMS-----SALTFGSAVHHAL 816 Query: 817 TELIKKRINKN------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 +L +K + + H E + I F Sbjct: 817 EQLFRKMKADPAGRFPTADVFVEDFRWFMRRHEEGFTPAEFRRRLEYG--ETILPGF--- 871 Query: 871 EEKIQSSIEK-IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929 + ++ V P + I GI L G D ++ + V + DYKTG+ Sbjct: 872 YAAHHAGWKRDALVEYPFR-NILMDGIPLNGKLDMLEFSGN-HVTVVDYKTGNPQNARKK 929 Query: 930 QKLIDP 935 DP Sbjct: 930 LNPPDP 935 >gi|223932474|ref|ZP_03624476.1| ATP-dependent nuclease subunit B [Streptococcus suis 89/1591] gi|302023672|ref|ZP_07248883.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus suis 05HAS68] gi|330832697|ref|YP_004401522.1| ATP-dependent exonuclease subunit B [Streptococcus suis ST3] gi|223898928|gb|EEF65287.1| ATP-dependent nuclease subunit B [Streptococcus suis 89/1591] gi|329306920|gb|AEB81336.1| ATP-dependent exonuclease subunit B [Streptococcus suis ST3] Length = 1088 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 111/938 (11%), Positives = 244/938 (26%), Gaps = 121/938 (12%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L + ++ DL A+ + L Sbjct: 97 FEDGDLKVYGRLQRDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 T+ L + + E L + K + ++ G + L+S + Sbjct: 150 IFLAVTDILSKESFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + +L I ++ + + L L + + Sbjct: 210 NE--RVSEIL--------------IGVYASKKAVQVIYAEGNVYQANVDFLRQLSAQFQT 253 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + D S ++ + L E N++E Sbjct: 254 KATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ--------EKIQLWEVVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R + + K L+ D + + ++ I +S Sbjct: 306 EVEQVATAIRQHIHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L + + EL D+ Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + + D + L I++ + L +T Sbjct: 416 GQAAFSRAFSVNGRADYDAEVVKEKRLVYDLAVLEPLRAKIMEPLNQLFKAGPQSGATLL 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + ++ E+ K+ + L + K +++ Sbjct: 476 EKFMAFLEAIEFPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + G+ + +PK L+ Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595 Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715 +L + E A + N L+ + N S + Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVISTPQIYNEGEDSLSPY 655 Query: 716 ------------------------------LQRLLVLGGTDFFDNLKKRGQC--YLDWTR 743 L L+ DN + GQ + R Sbjct: 656 VKILKEMGLSSEERGRIKSLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVR 715 Query: 744 KLDYTTKQPHYKRP---------------KPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 L + + P E +P S S + N+ Y + R Sbjct: 716 HLKKKLESQGIEIPTITGDITSKQLAADTLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE--INHLMKQIIDSHFEKE 846 +L+L P G H I ++ + + + +++ ++ F Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILRTRDEAEFAMF 833 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIHL 898 + KI+ S + + +I + + + +H+ Sbjct: 834 YNQDADARYTEEVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHV 891 Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 G DR+D L+ + V + DYK+ + + PQL AAL+ + + Sbjct: 892 NGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDKP 949 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V Y+ L+ T + ++ + K L Sbjct: 950 VFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987 >gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2] Length = 1072 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 107/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 + V+P + + F S ++ + + +A Sbjct: 680 QSVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|224417727|ref|ZP_03655733.1| hypothetical protein HcanM9_00476 [Helicobacter canadensis MIT 98-5491] gi|253827072|ref|ZP_04869957.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313141269|ref|ZP_07803462.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510478|gb|EES89137.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130300|gb|EFR47917.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 743 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 65/407 (15%), Positives = 132/407 (32%), Gaps = 37/407 (9%) Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 S+++ + Q + + + ++ FS ++ ++ + Sbjct: 303 RLQSLAESAQSFEEFWQFIEEMQENTWEDKEVKKIILQRLEYFSFGLKFLDSLQTRDKIY 362 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ ET+ + ++G LE+R + F +IL N+ PK + K+ FL+ Sbjct: 363 AFFM--MLKKETIDDIG--GGRISVIGILETRGIAFSYVILPEFNQNNVPKVSQKDIFLN 418 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 +++ + L T + + + + +N SR+L + Sbjct: 419 SIIRQKVGLPTRKDRENLQKYYYAKLFAHSKEA--CVMFVSNEEEEPSRFLLEEKIFKNA 476 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 F +K G+ +L+ L Y K+ S ++++ L+ Sbjct: 477 SFAKASRKYGEYFLN-GELLSYKEKEIIAP---------LDFGVMSATKLECLLTCKRKY 526 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 Y R +L F GT H + + I+ +++ +E Sbjct: 527 YYRYVLGYKEQMDFN-------VGTQIHKALQKAYVNF------AIHRDFEKLQQEAYEN 573 Query: 846 ENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFAD 903 + + + + F E K I + + I G D Sbjct: 574 LQVYENKREYFELEIAKRYLQKFFYAERKHLEDGWIPIEFEKEFSLQVCEIPF--RGRID 631 Query: 904 RIDLLKSGFVDITDYKTG---DNPKKETAQKLIDPQLSLEAAALKAG 947 RID K V + DYK + + D QL L A AL+ Sbjct: 632 RIDK-KGESVLVLDYKYKKNLKVSTQRSIDTSKDFQLVLYALALQES 677 >gi|120402801|ref|YP_952630.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] gi|119955619|gb|ABM12624.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] Length = 1086 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 107/959 (11%), Positives = 242/959 (25%), Gaps = 128/959 (13%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F +LL + L PV RLL L + + L E + Sbjct: 115 YHAFAGNLLREFGLLLPVEPDTRLLGETELWQLAFRVVCAHPAALDTEKSPASITDM--V 172 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL-------AADFLK--------- 189 + LA L++ + +L L + L Sbjct: 173 LRLAGQLSEHLVDTAALRDTHVELERLVLNLPAGRYQRDRGPSQWLLRMLATQTERTMLV 232 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATAR 244 R+ E + R A+ ++ +++ + A Sbjct: 233 PLVDALHRRMREERVMDFGMQMASAARLAAQFPQVGAQLRQRYRVVLLDEYQDTGHAQRV 292 Query: 245 LMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 +S++ +G + D W + + +++ S +L Sbjct: 293 ALSSLFGGGADDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPTLELRTS 352 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 E + VS + RS+ + P L + + + Sbjct: 353 WRNPPEVLHLANEVSVDARRRSVAVRALQPRPGAEPGSVRCALLSDVERERDWV------ 406 Query: 363 EADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIP 420 A IA ++ + +A++ A + LTR G+ +++ Sbjct: 407 --------ADQIARRWHAGIEADGAAPTAAVLVRRNADAAPMADALTRRGVAVEVVGLAG 458 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L + + ++L A ++ P + G + + + + Sbjct: 459 LLAVPEVADVVAMLRLAADPTAGAAAVRVLTGPRWRLGARDVAALWRRAVALV------E 512 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + + + + + +T Sbjct: 513 PGASSDGESATAGIVAQLGPDADAACLADAICDPGPATAYSEAGHARIVALGRELTGLRA 572 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + +++ ++ + E + + G + Sbjct: 573 HLQSPLPDLLAEVRRVLG--IDTEVRAAQPVSAGWSGTEHLDAFGDVVADFAARGGATVS 630 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + ++DI ++ +G + + IL ++ L + + + L+ V+P + Sbjct: 631 ALLGYLDIAEQVENGLAPAEVTVSADRVQILTVHAAKGLEWQIVAVPHLSGRVFPSTASP 690 Query: 661 NPFLSRVMQSDLNL------------------------------------KTAEKYIGQA 684 +L+ L + + Sbjct: 691 RTWLTDAADLPPLLRGDCATVSEHGVPVLDTSDVSDRKGLSDKIYDHKRSLEQRRTDEER 750 Query: 685 AHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVL-----------GGTDFFDN 730 + H + + P S +L L + G D + + Sbjct: 751 RLLYVAITRAEHTLLVSGHHWGATESKPRGPSTFLCELKDVIDASVQSGSPCGAVDVWAD 810 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE---------IKQLIND 781 G+ R ++ + + A+ T + S + D Sbjct: 811 APADGEPNPLRDRVVEAVWPEDPLAGRRAHTDHGARLVTTAMSTAGGAGPQPDVHGWTAD 870 Query: 782 PYAVYARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---- 836 A+ A R L +P + L + + + + Sbjct: 871 VDALLAERELAAQRPVPPLPLQLSVSAMVELGRDPEAVAQRLQRRLPRRPDAQALLGTAF 930 Query: 837 -QIIDSHFEKENLPP--------HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + +F+ E L D R ++ +F + I V +P Sbjct: 931 HEWVQRYFQAEKLFDLDDLPGAVDADRQDRGELEELQAAFALSPWAAR---TPIDVEVPF 987 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 M I + G D + G V + D+KTG+ P E + QL++ A Sbjct: 988 DMMIAGR--VVRGRIDAVFADGDG-VMVVDWKTGEPPATEEELQHNAVQLAVYRLAWAR 1043 >gi|218506213|ref|ZP_03504091.1| hypothetical protein RetlB5_00732 [Rhizobium etli Brasil 5] Length = 221 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 118/221 (53%), Positives = 149/221 (67%) Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + L G VKP+ LFI GTLE+RL + DTLILGGLNEG WP +A NPF+ R+M Sbjct: 1 MAALAAGHAVKPRALSHPRLFIFGTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMM 60 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 ++++ L+ E+ IGQ AHDFEMANGTRHLIY+R+LR+ + PT+ASRWLQRLL LGG F Sbjct: 61 KTEIGLEPPERRIGQLAHDFEMANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFE 120 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 LK RG +L W +D Q +RP P PPL QP++YSFSE+ +L DPY +YAR Sbjct: 121 AELKGRGTRFLQWAGLIDRGETQAPAQRPSPKPPLALQPQSYSFSEVGRLRRDPYTIYAR 180 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 RIL+LD I F +DP +RGTL+H II I+ TP Sbjct: 181 RILRLDPIDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTP 221 >gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1] gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2] gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1] gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2] gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2] gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1] gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1] gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1] gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4] gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1] gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3] gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3] gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1] gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1] gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1] gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2] gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1] gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1] gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1] gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2] gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3] gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1] gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2] gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3] gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1] gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1] gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1] gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2] gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1] gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2] gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3] gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2] gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2] gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1] gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL099PA1] gi|332675731|gb|AEE72547.1| DNA helicase II [Propionibacterium acnes 266] Length = 1072 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] Length = 1019 Score = 141 bits (356), Expect = 5e-31, Method: Composition-based stats. Identities = 115/1070 (10%), Positives = 269/1070 (25%), Gaps = 190/1070 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + +++A E+ K+ + I + E D +LS LN Sbjct: 47 EILALTFSEKAAAEMNDRIE---MKRPNLDLEIHTFHSFCLEVLQ-DNMLSSGLNVSGGV 102 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEE 163 I R +L + + L + + L D +D T++ Sbjct: 103 ISRTSQLVWGLQ-HIDIFDFEHIKLGNNAADVIEAVIDGISAFRDELIAPDELDDYLTQK 161 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRAE 218 +++ E+ +LL L + + + E N + Sbjct: 162 ------QSVQVEEAEQEYLLQLGDLLKVYRAYEQYKRERNLIDFDDMIHGAVTLFRSDPA 215 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + I++ + A +L+ +A G + D + + Sbjct: 216 LRSSYRSRFRYILVDEFQDTNYAQLQLIKEIA----GENLCVVGDDDQTIYRFRGAYLTN 271 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 T + L + + G V+S + + Sbjct: 272 IRDFKQWAATHT--------------------ETLLDQNYRNSG--AVLSLALQVMAGAP 309 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK------------ 386 R L + + + V + N+ EA +A + + Sbjct: 310 GRREKALFTEKGDGEP----VTVAACGNDAGEAEYVAAEIEKLVGTPYHSRQDGGDRPLE 365 Query: 387 -KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + ++ + ++ + L R I + A + + + L I Sbjct: 366 YRDFTVLCRTKADGKKFQAALQRHAIPCEYQANVDFMQLPVVRDMVAYLRIIDNP----- 420 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L + + A K Sbjct: 421 -------------------------LMAAVPLNRVMKICSIPETVVQKINAAAIKRGDDD 455 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 ++ + + + + + L + K ++ + + + Sbjct: 456 DDGVYETMQDAASIVPDHAEPVGEVVRMLAPFIEQKERY----TLPELVHAVMMQASGLY 511 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 ++ + T +++++++ E V+ + E Sbjct: 512 RSALTDTADMVRLYLATFHEIVLEFDRTTPEATIPGLLQYLELLGA-FPVEVVREQKEAG 570 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-----LSRVMQSDLNLKTAEKY 680 + IL +S+ F + + L +P + F L+R +++ + K Sbjct: 571 DAVQILTAHKSKGKEFPVVFVADLAREKFPLRYSPKRFRVPGDLARGLRTGDDEKALFVQ 630 Query: 681 IGQAAHDFEMANGTRHL------------------------------IYTRSLRENNIPT 710 + M L + T P Sbjct: 631 EERRLLYVAMTRAEERLYLTYAKWYGDNKRERKPSPFLEELNFRENPLITVVEPPACAPA 690 Query: 711 IAS------------------------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + R + L + ++G D L Sbjct: 691 LPVTAGDPVEDLRTSLQEEVVRAVSEMRISTAIQTLVTLEGVREYAEQGTDDFDRDAFLA 750 Query: 747 YTTKQPHYKRP------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + P L +S S + + P + ++ + Sbjct: 751 KAGSRVGADTRITTLLDPPHQSLIPPNYRFSASALSTYQDCPLQFKFANLYRVPLPRQPQ 810 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL- 859 G+ H++I L + + + +++ ++ E H Sbjct: 811 -----LVFGSTLHSVIEHLTR--NPDPSQSLRDQGLALLEEYWSPEPYESKTQESEAHDS 863 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + ++L + + I V + + GF DR++ G + D+K Sbjct: 864 ASALLDTYLAWQA--GNPNTVIGVEKEFTFSFAGHS--IHGFIDRLEQTPDGNYVVIDFK 919 Query: 920 TGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 +G P QL+L + A++ Q+ K A LFY++ ++ Sbjct: 920 SGKKPDSLTKKAVGEHIQLNLYSMAVQQ--MYQVLPEK-AELFYLKDGKRVSYLPT---- 972 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +E + L ++ + E P + + Y L Sbjct: 973 -----EETIQVFTGTLSTLIGGITREEFP----PKSDNQRCQWCAYRPLC 1013 >gi|313891346|ref|ZP_07824962.1| putative ATP-dependent nuclease subunit B [Dialister microaerophilus UPII 345-E] gi|313120121|gb|EFR43297.1| putative ATP-dependent nuclease subunit B [Dialister microaerophilus UPII 345-E] Length = 1138 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 116/970 (11%), Positives = 253/970 (26%), Gaps = 144/970 (14%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 I L + ++ LS+ ++ K+L DI + E L Sbjct: 83 DAISKLGQDLVLSLILSEEKNNLSVLSQMSSQPKFIKSLKDIFHQFNSSLITEEMLENAA 142 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 ++ L + K + E L N S G L+ E K I I Sbjct: 143 KKEKDSHLGKKLGDLHLLFKKYHEYLT--NRFSYNGEIFDLLATEIYKSDSIKKSAIWID 200 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G G +++S + + + + + Q Sbjct: 201 GYHGFTLQEMKIISALVKNAKKVTITL--------------------------PFESAEQ 234 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L + S+ ++ +S + Sbjct: 235 AMQNPLFMKPSETWRILSENEKTSDATILTTLHRFQSSRIRSLVKHGFETTPYECREK-E 293 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLA-RRVKLELTRF 409 + + A + E IA + + + + ++ + L ++ ++ Sbjct: 294 ETDGGIYPSSAADRSVEIDFIARKILTLVRDKKLRYRDITVLLRNPELYTDLIERIFKKY 353 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIF-------KLNDFMAIATLVKHPLAKFGFPEK 462 + + I+ ++ +T LL + + ++K L K PEK Sbjct: 354 ELPVFINKKDTMNNHPLIVSVTGLLEFLTAQANRKNSGYSRHILFPILKTGLLKNFPPEK 413 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 N LE ++ + T K+ + + S + + + E A Sbjct: 414 -----VNKLENYIIKNGIRFFQWDK-----EWNYRTVKDIDNPENELSEIEKSENEEANN 463 Query: 523 LVDHILQCITPLVTYK-TNKNSTCGNLSISDWT--KLTVTCLQNVCLDEHRKLPNLWFEE 579 +L+ + L TN + + +W + L +E K + Sbjct: 464 CRKKLLETLGNLEKEWNTNTSVKERCRILYEWLVSQNIPQILAERDKNEFEKTRKKPHIQ 523 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 K SL +++ + +++I+ + + + + + Sbjct: 524 AWKKFISLLDELVNIAGEDRLPEEYFMNILKSGLFNLSFATIPDTLDHITATSISRGYHM 583 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN----LKTAEKYI----GQAAHDFEMA 691 + + G+ G +PK+ F++ + L L ++ + + + Sbjct: 584 ESTAVFIPGMANGEFPKDIENTNFITEAERKHLAKENTLTLGNDFVFNIYEEQFYTYLAL 643 Query: 692 NGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG--------------Q 736 + + + ++ + ++ + ++ + + R Q Sbjct: 644 TRAKKYMYISYPKTDSENKPLEPSFIYKKIISLNYAHKEEIADRPTYDTKDMTFFSNPKQ 703 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-------------------------- 770 L + Y Sbjct: 704 AITLLPEILRQGLPKKDSFWTYLKNWATQSHNEYAELFYDQQKSFKYNSTASTLSQDIVN 763 Query: 771 -----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 S S++++ + PY + R LKL D G H+ + Sbjct: 764 KLFKPYGKFYGSISQLEEYRSCPYKYFLNRGLKLS--DRQDGRIQNIDFGNYLHSGLKRF 821 Query: 820 ----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-----S 864 K + ++ + II L + H + Sbjct: 822 GNLLSSMNKTWKDLSDDEIDAFSNQISSIITPLVAHGTLTSDATNAYTHRLLNMTFKKSI 881 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGFADRID----LLKSGFVDITD 917 F S + + K+ I++ L G DRID + + D Sbjct: 882 KQFKNW--SENSDFKTTDLEREFKINIKADDKDTFTLRGKIDRIDSYTTETSQCALAVCD 939 Query: 918 YKTG-DNPKKETAQKLIDPQLSLEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 YKTG + ++ I QL +K I L YI L + Sbjct: 940 YKTGIQSIDLQSIISGIKLQLVTYMLAMIKENPEKNI---IPTALMYIYLSNDAESFKSA 996 Query: 976 NDKKKYSADE 985 + +E Sbjct: 997 PPDGIPAKEE 1006 >gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1] Length = 1072 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 107/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A + L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--QDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|332283341|ref|YP_004415252.1| hypothetical protein PT7_0088 [Pusillimonas sp. T7-7] gi|330427294|gb|AEC18628.1| hypothetical protein PT7_0088 [Pusillimonas sp. T7-7] Length = 884 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 103/914 (11%), Positives = 231/914 (25%), Gaps = 88/914 (9%) Query: 164 KKWEDLHALKNEKYG------MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 E+L L E + + + + + Sbjct: 8 ITLEELARLDAENVLVLTVNNRHARRVLAEMSASLTGTRSVMAVPDIIPLSAWLRQAADQ 67 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITE 276 + G + A + + A V + A++ + I + Sbjct: 68 LSFSPESG-----LAAHTLDAFGAQWLWQKVVGEAESDRALLDVAQAARLAAEADRLIDD 122 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 ++ T + L + + + K + Sbjct: 123 WHIHVAPELETIDYQHFREWRQRYRTLLAQLDMEDGNLAYERITQAVCSGLLKIPVGALV 182 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396 N + +L +EA ++ ++ D Sbjct: 183 LAGFNELSPRLSGMLLAMQEQGASLAVLARPAQEAEAVQR--------------VVARDP 228 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + R+ ++ + + + + + + L + Sbjct: 229 DGEWRLAVQWAAERLQAHPQGRYAIVASRLEADVVLAHRCLRAGLTDGQGNVLPYNVAVA 288 Query: 457 FGFPEKY-------LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 + R + + R W+ Sbjct: 289 RPISDWPLVAAAISWLRVLARFVTKKTCPPAEVGSALLAGACAAARHEASGRAAIDVLWR 348 Query: 510 SRLSE--EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 R + + E A LL H Q + ++ W + LQ + Sbjct: 349 QRAAVTVSEPEFARLLDQHAPQLAQAWRGSYEMLSGESSAATVDVWVQRFRQGLQALAYP 408 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + +++ L S + K + ++ RL +P+ + ++ Sbjct: 409 GQSVLDSHSYQQLEAFDGLLDSLARQAPVMGKLGFSSAVGLLQRLAHETPFQPQRDPAAR 468 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK--TAEKYIGQAA 685 L +LG LES +D + + GL + V P NPF+ + T E+ + A Sbjct: 469 LDVLGFLESEGGRWDGVWVLGLTDEVLPAAPKPNPFIPLAALRQAHAPRATPERELHWAK 528 Query: 686 HDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + + + + E S + Y Sbjct: 529 TLYRSLLASAPQVWLSHAEYEGERELRPSPCIAAAAPSARALEPAASMPCSLEY------ 582 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + + P + I +P +A+ L + ++ + D Sbjct: 583 ---------IQDEQGPPLQAGHITRGGIAVIDTQARNPLWAFAKYRLGASELANYAELSD 633 Query: 805 RTDRGTLFHNIITELIKKRINKNTPE-------INHLMKQIIDSHFEKENLPPHI--DII 855 + RG L H I + + ++ + L++Q ++ + Sbjct: 634 QNARGLLLHKAIELVWRMLPDQQALRDLHAQGGLQALLEQSAQQAADECLQDYGAVVRGL 693 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 I +L+ E+ V + + L+ DRID L+ G + + Sbjct: 694 ETDRTITILQQWLQLEQARDP-FRVRDVEQ--TYSWSHGALQLSLRLDRIDELEDGRLAV 750 Query: 916 TDYKTGD----NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 DYK+G ++ + QL A+ L + +VA L RL + Sbjct: 751 IDYKSGGGRLDPRPDWMRERPVGLQLPFYASVLAG------EDARVAALVLARLHAREVQ 804 Query: 972 DCITNDKK--------KYSADELSEKSLKNL----IEIVTLLQNGEQPFISHLRLSEKSN 1019 D ++ + + L I+ + + ++ + Sbjct: 805 VKGLADADYGFDGLSALADWPMFADCTWEQLMGEWRRIICQMADEYAAGVARNHSLRPDD 864 Query: 1020 I-QSEYDHLARVAE 1032 I + R+ E Sbjct: 865 IQYCDVLPFLRLNE 878 Score = 41.8 bits (96), Expect = 0.60, Method: Composition-based stats. Identities = 86/873 (9%), Positives = 209/873 (23%), Gaps = 69/873 (7%) Query: 36 YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL--PIIKSLGDVVEEKFTADL 93 + L L +V + R + + +E +++ P I L + + Sbjct: 10 LEELARLDAENVLVLTVNNRHARRVLAEMSASLTGTRSVMAVPDIIPLSAWLRQ-----A 64 Query: 94 LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153 + +P L+ +W+ + + D A A Sbjct: 65 ADQLSFSPESGLAAHTLDAFGAQWLWQKVVGEAESDRALLDVAQAARLAAEA-------D 117 Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213 +ID E L + + + W + L +L+ Sbjct: 118 RLIDDWHIH-VAPE-LETIDYQHFREWRQR-----------YRTLLAQLDMEDGNLAYER 164 Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH----IPTA 269 + +A L+K G +++AG P + ++ + VL Sbjct: 165 ITQAVCSGLLKIPVGALVLAGFNELSPRLSGMLLAMQEQGASLAVLARPAQEAEAVQRVV 224 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR-------EDVKRLGNVSNEMYG 322 + E + + HPQ A + L+ G + Y Sbjct: 225 ARDPDGEWRLAVQWAAERLQAHPQGRYAIVASRLEADVVLAHRCLRAGLTDGQGNVLPYN 284 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 ++ S P + + +L + ++V A A Sbjct: 285 VAVARPISDWPLVAAAISWLRVLARFVTKKTCPPAEVGSALLAGACAAARHEASGRAAID 344 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN----AIF 438 ++++A+ ++ AR + + S + + +++ + Sbjct: 345 VLWRQRAAVTVSEPEFARLLDQHAPQLAQAWRGSYEMLSGESSAATVDVWVQRFRQGLQA 404 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL--------RGNKNSYDIMDLKS 490 ++ + + + + + + + Sbjct: 405 LAYPGQSVLDSHSYQQLEAFDGLLDSLARQAPVMGKLGFSSAVGLLQRLAHETPFQPQRD 464 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + W + L PL + Sbjct: 465 PAARLDVLGFLESEGGRWDGVWVLGLTDEV-LPAAPKPNPFIPLAALRQAHAPRATPERE 523 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 W K L E E + + + + A ++ Sbjct: 524 LHWAKTLYRSLLASAPQVWLSHAEYEGERELRPSPCIAAAAPSARALEPAASMPCSLEYI 583 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-------- 662 + G ++ + ++ T L G +E + Sbjct: 584 QDEQGPPLQAGHITRGGIAVIDTQARNPLWAFAKYRLGASELANYAELSDQNARGLLLHK 643 Query: 663 ---FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQ 717 + R++ L+ G A + A ++ LQ Sbjct: 644 AIELVWRMLPDQQALRDLHAQGGLQALLEQSAQQAADECLQDYGAVVRGLETDRTITILQ 703 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + L L ++ Q Y L + + + + S + Sbjct: 704 QWLQLEQARDPFRVRDVEQTYSWSHGALQLSLRLDRIDELEDGRLAVIDYK----SGGGR 759 Query: 778 LINDPYAVYARRI-LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 L P + R + L+L F D + + ++ + + + Sbjct: 760 LDPRPDWMRERPVGLQLPFYASVLAGEDARVAALVLARLHAREVQVKGLADADYGFDGLS 819 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 + D + + WR + +++ + Sbjct: 820 ALADWPMFADCTWEQLMGEWRRIICQMADEYAA 852 >gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1] Length = 1072 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 266/1061 (25%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 ++ + I + + + + + ++ L + +I+ + Sbjct: 620 ARKSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|289523885|ref|ZP_06440739.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502541|gb|EFD23705.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 959 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 109/734 (14%), Positives = 220/734 (29%), Gaps = 90/734 (12%) Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409 + + + L + R+E ++A L ++E K A+ + L + Sbjct: 267 EDRPAKIRLFTCGDPRQELETLARNLWFKVEEGVLTFKDIAIEIPS-PYKSIAEDVLNAY 325 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 I +G L+ T+ ++ L A + F+A L+ +PL F P+ Sbjct: 326 RIPWKSGSGKYLNETMCWDLVKRLKIAKDENWPFLATIGLLSNPLFGFDLPK-------- 377 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 E + + + ++ AT+ + L +L+ Sbjct: 378 --EFLEFLKERIPSGAKEWTDILSKSGATESTRIIKKWDSFFNHIKRGSNVESLFQRLLK 435 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + + + + S+ + L+ + E++ +L+ Sbjct: 436 LLDDELEIRKRAGACVTDPSLDESLYEVSKFLEAL-------------EKKALSLAESLP 482 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ + + A W + + R + + P K ++ I L ++ Sbjct: 483 ELGPAQKDMLSEAEGW-EYLNRFAEETRILPPKRKRESVTIYFDSSPVLATHKLYVVINA 541 Query: 650 NEGVWPKNTAKNPFLSRVMQS---------DLNLKTAEKYIGQAAHDFEMANGT--RHLI 698 WP P L+ + ++L + Q F Sbjct: 542 TSQQWPGKITDPPLLNDEARRIIHENANLAGIHLPLRHERRQQKEALFRRHLYASTEETW 601 Query: 699 YTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--YLDWTRKLDYTT-KQPHY 754 T S P S +L+ +R + R L + Sbjct: 602 LTFSAIDAQGRPNKLSPFLEMDGEKEDLYIIVEETRRPLSKLLPEGERFLREAEVPKDKL 661 Query: 755 KRPKPFP-PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 RP+ P P S+I + P R ILKL + D G + H Sbjct: 662 SRPRRKPIPSVKPKDEGYLSDIDTWVQCPALYAYRSILKL--FQPKEAGLDAQKCGNMLH 719 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL-----PPHIDIIWRHLFHKISHSFL 868 + ++ K R ++ + ++Q+ + E R + + + Sbjct: 720 LLWSKAWKMRSSEKGLSLEACVEQLWEEVVESTYPLLNHIRKLHRHRERLRLQVLRLARI 779 Query: 869 EHEEKIQSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 + E ++ ++ + G ADRID LK + DYKT + E Sbjct: 780 QEEIYLKLRTAFASTEWERQLPPFTINDVSFRGRADRIDHLKEIGQILWDYKTAGSKNYE 839 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI---------RLKQKFKIDCITNDK 978 QL+ A AL +K FY+ + ++ K Sbjct: 840 N-----SLQLASYALALSK------ADQKTGGAFYLCHSDSMCLGHISKEHKGLDKRLVP 888 Query: 979 KKYS---------ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + YS +++++++ + LI L +G K+ +Y L R Sbjct: 889 EGYSDNIKIKREKLEDIAKRAEEQLISWAKDLTSGSF----EPHYDRKTCKDCQYKVLCR 944 Query: 1030 V-----AEWREEYD 1038 EW E + Sbjct: 945 KSEIEGGEWLENGE 958 >gi|253750626|ref|YP_003024063.1| exonuclease RexB [Streptococcus suis BM407] gi|251819058|emb|CAZ55681.1| exonuclease RexB [Streptococcus suis BM407] Length = 1088 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 106/938 (11%), Positives = 240/938 (25%), Gaps = 121/938 (12%) Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + + L + L + ++ DL A+ + L Sbjct: 97 FEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPD-------KQADLVK 149 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI-IIAGSTGSIPATARLMSTV 249 T+ L + E L + K + ++ G + L+S + Sbjct: 150 IFLAVTDILSKEGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSAL 209 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + ++ A + E + + + Q+ Sbjct: 210 NERVSEILIGVYASKKAVQATYA---EGNVYQANVDFLRQLSAQFQTKATYIG------Q 260 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 L ++ S D + + L E N++E Sbjct: 261 EPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQ---------------EKIQLWEVVNQKE 305 Query: 370 EAISIAIALRMSLDE--NKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLH 426 E +A A+R + + K L+ D + + ++ I +S Sbjct: 306 EVEQVATAIRQHVHQGARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPL 365 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SL + L+K L + + EL D+ Sbjct: 366 VHFVESLERLRRYRFRAEDLLNLLKSGL----------YASISQKELDLFESYILFADMK 415 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + + + + + D + L I++ + L + Sbjct: 416 GQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALL 475 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++ + + ++ E+ K+ + L + K +++ Sbjct: 476 EKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHLLENFHQIFGKEKLKMDDFL 535 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + + + + + G+ + +PK L+ Sbjct: 536 AILQAGMQASHYRTVPATVDVVNVKSYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTE 595 Query: 667 VMQS----------DLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRW 715 +L + E A + N L+ + N S + Sbjct: 596 EEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNSATEQLVISTPQIYNEGEDSLSPY 655 Query: 716 LQRLLVLG------------------------------GTDFFDNLKKRGQC--YLDWTR 743 ++ L +G + + GQ + R Sbjct: 656 IKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLETEEWEGQRAFWTVLVR 715 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT---------------YSFSEIKQLINDPYAVYAR 788 L + + P + ++ + S S + N+ Y + R Sbjct: 716 HLKKKLESQSIEIPTITGDIASKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVR 775 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 +L+L P G H I ++ + + + E Sbjct: 776 NVLRLREQESIH--PTAFQHGLFLHRIFERVVMDQSELDFDQKVDKAILCTRDEAEFAMF 833 Query: 849 P--PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNIPAK----MAIE---SIGIHL 898 + KI+ S + + +I + + + +H+ Sbjct: 834 YNQDADARYTEEVLDKIARSSAT--ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHV 891 Query: 899 TGFADRIDLLK-SGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 G DR+D L+ + V + DYK+ + + PQL AAL+ + + Sbjct: 892 NGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQE--LDETKDKP 949 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 V Y+ L+ T + ++ + K L Sbjct: 950 VFGAMYLHLQDPIIKLKDTKNLEQLEGAANTSLVYKGL 987 >gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus] Length = 1078 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 130/1105 (11%), Positives = 294/1105 (26%), Gaps = 164/1105 (14%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N V T++A Sbjct: 20 DEQAAVIGAPPGPMVVIAGAGAGKTETMAARVVWLVANGYATPGQVLGLTFTRKAAAQLL 79 Query: 58 QELRSEFIEITGKKSTILPIIKSLGD---VVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114 + +RS + G + P+ D + LL + L P+ RLL + Sbjct: 80 RRVRSRLARLAGSG-ILAPVAADEPDPVIATYHAYAGTLLREHGLLLPMEPNARLLTETQ 138 Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL-- 172 L + + D DL ++ + A + LA L++ + ++L L Sbjct: 139 LWQLAFRLVCDFDGDL--DTEKTPGAVTAQVLALAGQLSEHLVNTTDLLSSHDELERLIL 196 Query: 173 -------KNEKYGMWW-------LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 + E W L + + R Sbjct: 197 TLPPGPRQREGGPSAWLLRLIETQRERTQLMAIVEQLIALMRTRGVLDFGAQMALSARLA 256 Query: 219 AEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIW 271 A+H + +++ + A L+S++ + D W Sbjct: 257 ADHPIVGQTQRERYRVVLLDEYQDTGHAQRILLSSLFGRGVDPDLALTAVGDPIQSIYGW 316 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 + + +++ +L E + +VS E RS+ Sbjct: 317 RGASATNLPRFTTDFPLPDGSPAPTRELRTSWRNPPEALHLANSVSEEARRRSV------ 370 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--- 388 + +P +A + E +A L ++ ++ Sbjct: 371 ------------AVRPLLPRPDAASGRIACALLGDIAAEREWVATQLAAVYEQAHREGNR 418 Query: 389 ---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 SA++ + A + L G+ ++ L + ++L + A Sbjct: 419 PPSSAVLVRRNSDAAPMAEALAAQGVPAEVVGLTGLLGLPEVADTVAMLRLVADPTAGPA 478 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ P + G + + + RG + + + +A ++ Sbjct: 479 ALRVLTGPRWRLGAHDLVVLWRRA---TGFGRGGAPAVGPDVGEEADIPCLADAISDPGT 535 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 P S + + + + +T + L + L + Sbjct: 536 PDEYSPEGWKRLTALRRELSALRARLGMPLTDLIAEVQRVLALDVELVAGRRGEGLDQL- 594 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIE 623 +++ F++ + + ++++D + G Sbjct: 595 -------------RAFTDVAAGFAESADQSDPVGVVSAFLQYLDAAWEIEKGLAPVEVAA 641 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV---------------- 667 + IL ++ L +D + + L+ GV+P A +L+ Sbjct: 642 SPGRVQILTVHSAKGLEWDVVAVPHLSAGVFPSGVAAPTWLTSATELPPLVRGDRASQGD 701 Query: 668 ----------------------MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT--RSL 703 + +L T + + L + Sbjct: 702 QFGVPQLDTEGITNRKQLADAIARHKDSLATRRIDEERRLLYVAVTRCAEQLFVSGHHWG 761 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLK----KRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + P S +L L + + + + +R + + + P Sbjct: 762 QTGLKPKGPSDFLVELRDVIESAAAEGVPCGTVERWAPEPPAGERNPMLDQTVEAQWPAD 821 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYA-----------VYARRILKLDFIPHFKKDPDRTDR 808 ++ + D A A L + P+ T Sbjct: 822 PLAGRRDDIEAGARLVRAALADGAALTMEDDDDTDGWEADVDALLREREQGHRRPEMTLP 881 Query: 809 GTL-------FHNIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHIDIIW--- 856 L L ++ P+++ S ++ + Sbjct: 882 QHLSVTSLVELRQDPQALARRLARPRPTRPDLDARRGTAFHSWVQRHYGSVRLIDFEDLP 941 Query: 857 ---------RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID- 906 + +FLE E + + V +P ++++ GI + G D + Sbjct: 942 GDGYGSFEDAEDLAALQSAFLESEWADR---TPVEVEVPFEISVA--GIVVRGRIDAVFG 996 Query: 907 -LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIR 964 + D+KTG P + + QL++ A S +ID +V +F Y+R Sbjct: 997 PDSAEDTWTVVDWKTGHEPAGDEMKAA-ALQLAVYRRAWA--SLREIDPARVRAVFHYVR 1053 Query: 965 LKQKFKIDCITNDKKKYSADELSEK 989 + + + EL+ Sbjct: 1054 SGRTVAPTELPDLPHAEELAELTRD 1078 >gi|182412469|ref|YP_001817535.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae PB90-1] gi|177839683|gb|ACB73935.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae PB90-1] Length = 989 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 133/969 (13%), Positives = 258/969 (26%), Gaps = 154/969 (15%) Query: 17 FFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK--STI 74 F P L + + PL L+ + + VPT+++ + LR E +K + Sbjct: 36 FLSWDAPLLPQAVALLAEGWTGDGPLDLSDLLVIVPTRQSGRRLREALAEHAARKQAAVF 95 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P + P L L ++R+ D +D++P Sbjct: 96 PPKVML------------PEALMTPAPAAGVATHLESLLAWADVFRSVALDDFRDVFPVD 143 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 P + A A+ LA+ + + + D + + ++ Sbjct: 144 P--PARNFAWALRLAEEFVRLQRSLAEAGLQLRDALSRAGSDFPE------------AER 189 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W + L+ A A L + P Sbjct: 190 WRQISELETRHEQRLASAGLIDAPAARLRQA----------------------CTPELPG 227 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G + L P I P D+ + E Sbjct: 228 GVRRIVMLATPDPQPIALQALAALARAVPVEVAVYA-PAAEADAFDDWGRPRPETWNTRT 286 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 ++ R + + E + Sbjct: 287 LTVPDVAQRVHLCLDPEAQAARIAALAAEYREPEG------------------------- 321 Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + L AD + ++ EL G +L + Sbjct: 322 -------------RLGLGVADSEVLPLLQGELAEVRQVGFNPEGRARLGDQLFQLLQNCA 368 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + F + L + P + A L L + L + Sbjct: 369 RLARE-ESFATVQALARCPDFLEFLHGQLGPDFSAARFLHELDELHTRHLPPTLTEALQH 427 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 +++ V + + A+ L+ + ++ + N + + + Sbjct: 428 VERSERPKPDVSSGPTHPANSRIGPALRLIAGLRATLSR-GDFPANAQAALAAVFGARRF 486 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + + L A+ +W D+ RL Sbjct: 487 ESSRDEDAQLAEAAETWSVVL------------QDIAAAAARFTAASNADWWDVALRLYG 534 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + + + G LE + L++ GLN+G P +PFL ++ L L Sbjct: 535 ENICYDEKVAGA-IELQGWLELLWEDAPHLVVAGLNDGRVPDAIVGDPFLPESLRERLGL 593 Query: 675 KTAEKYIGQAAHDFEMANG------TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 KT + A+ + R + P SR L R Sbjct: 594 KTNATRFARDAYLLQAIAAWRTGDPGRLDLLFGKTTVAGEPLRPSRLLLRCPD------- 646 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + L R + T R +P + A P + + I+ + P+ Y Sbjct: 647 EELPGRIRQLFRPAESTHTTESWRRAWRLQPR--IVAPPTRIAVTAIRAWLACPFRFYLS 704 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI-------NHLMKQIIDS 841 R+L+++ + K + D D GTL H + + ++ ++ + ++ Sbjct: 705 RVLRMEAVDPAKSELDVFDFGTLCHAALEAMGREPALRDEQDAPRLREFLLARLELEAAR 764 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 F + P + + ++S + V P ++ I + +TG Sbjct: 765 RFGRHLALPLVVQLESAR-QRLSRAAEVQALSRAEGWVIEHVERPFEITI--GPLVVTGK 821 Query: 902 ADRIDLLK-SGFVDITDYKTGDNPKKETAQKLI------------------------DPQ 936 DRID + +G + DYKT D P L D Q Sbjct: 822 IDRIDRHERTGARRVLDYKTSDRPVDPEQAHLRGWRREETAPALARFTYNAKEQVWTDLQ 881 Query: 937 LSLEAAALK 945 L L A++ Sbjct: 882 LPLYRLAVQ 890 >gi|295836626|ref|ZP_06823559.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74] gi|295826114|gb|EDY46535.2| ATP-dependent DNA helicase [Streptomyces sp. SPB74] Length = 1174 Score = 141 bits (355), Expect = 7e-31, Method: Composition-based stats. Identities = 69/591 (11%), Positives = 143/591 (24%), Gaps = 68/591 (11%) Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 L+ PL + E A + L + Sbjct: 559 SWIATETALDLLASPLCGMDAADLRRLGRALRAEERAAGNPVPLPSDVLLARALA----- 613 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 P + A L + + L T + + + + W Sbjct: 614 ------EPERLIAHDAAYAKTARALGLLLARTRALLARGGTAEEALWELWNGTRWPARLE 667 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + +L ++ E + + + + I +T+ Sbjct: 668 RASRRGGAGGRNADRDLDAVCALFATAA----RAEERTGGRGALNFLAETEAQEIAADTL 723 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + + ++ ++ L + +++ G+ EGVWP + L L Sbjct: 724 SGRTVRPDAVRLMTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPL 783 Query: 679 KYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 A L+ T SR+L L V + Sbjct: 784 TRGALLAEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPQHLTVRPR 841 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTY 770 R +L TT P P Sbjct: 842 RPLAVPALVAELRATTVDPRASPALREAAARRLARLAALTDGEGRPLVPSAHPGTWWGLA 901 Query: 771 SFSEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNII 816 + + + DP A L + G + H ++ Sbjct: 902 DETVNEVPVRDPDQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VL 960 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + + + ++ + + FL ++ Sbjct: 961 ADEVATGRSPADLDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRA 1018 Query: 877 SIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLI 933 + P + + + I + G DR+D +G + D+KTG P Sbjct: 1019 GRTPVASEHPFDVTLPAGEHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTAAEVAHH- 1077 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 PQL++ A+ G+ + A L ++RL+ K + + + Sbjct: 1078 -PQLAVYQRAVAEGAVGPLTPGG-AELVHLRLEASSKDPLSPKVQPQEPPE 1126 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 77/682 (11%), Positives = 159/682 (23%), Gaps = 39/682 (5%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLVE+ + + +++A LR G P + Sbjct: 66 ETLVESVAARIAAGADPERLLVLTFSRKAAVALRDRMALRIG--PASAPRATTFHSYGYA 123 Query: 88 KFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 A +P +S ++ L + L+ + + + Sbjct: 124 LVRAHQEAGPEGSPVRLLSGPEQDLAVRELLEG---ETALSAEGRGRVRWPGQLRACLTT 180 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 A + ++ + LH W AA FL + V A Sbjct: 181 RGFADEVRAVLARSRELGLGPDALHRFARRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAE 240 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + R + + + + + + PA RL+ +A G +L D Sbjct: 241 LVHRADLLARRPDVARELAASYDAVYVDEYQDTDPAQVRLLDALAG--QGRTLLAFGDPD 298 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + V+ L Sbjct: 299 QSIYAFRGADVNGILGFPDTFRTREG--------------APAPVRVLPAARRAARAVLD 344 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 L + + + ++ + DVA+ + E +A LR + E+ Sbjct: 345 ATRALTLRIPLTRLPAAAVRAHREQLPTREGGDVAVHTCPSPGAETDHVADLLRRAHLED 404 Query: 386 KKKS---ALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 A++ + ++ LT G+ ID PL L + L A Sbjct: 405 GLPWGDMAVLLRAGHRLPALRRSLTAAGVPIDTEGDELPLRLEPAVQPLLTALRA----- 459 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 A P + + A A G + +R Sbjct: 460 TAEAETRAETAPHGEADTDPGPGTGAGQGDGAEAGAGAETGGGAGPAPEAEGERAPDAG- 518 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + E D +++ S + D + + Sbjct: 519 -PAPGAESVPVPEPDAGPVPEPAPGDPAPAPAGPGQPSHEPSWIATETALDLLASPLCGM 577 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + G + ++ I + + Sbjct: 578 DAADLRRLGRALRAEERAAGNPVPLPSDVLLARALAEPERLIAHDAAYAKTARALGLLLA 637 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-----KT 676 ++ E+ ++ E + A R + + L + Sbjct: 638 RTRALLARGGTAEEALWELWNGTRWPARLERASRRGGAGGRNADRDLDAVCALFATAARA 697 Query: 677 AEKYIGQAAHDFEMANGTRHLI 698 E+ G+ A +F + + Sbjct: 698 EERTGGRGALNFLAETEAQEIA 719 >gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1] Length = 1072 Score = 141 bits (354), Expect = 7e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 265/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHME 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649] gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649] Length = 1103 Score = 141 bits (354), Expect = 7e-31, Method: Composition-based stats. Identities = 112/1055 (10%), Positives = 256/1055 (24%), Gaps = 150/1055 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG---KKSTILPIIK--------SLGDVVEEKFTADLL 94 V T++A EL + P ++ + L+ Sbjct: 75 DVLGLTFTRKAATELSDRIGNRLAQLRRVGLWTPQEVDGAPSLGAAVSVSTYHSYAGRLV 134 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L RLL A + + + A + LA +A+ Sbjct: 135 REHGLRLGYEADTRLLSEAAAWQTAHEAVVRYDGPMDEVDKAESTV-TAAVVDLAGEMAE 193 Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWL-------------LAADFLKIASKYWTERLVE 201 + E+ + + + + + E Sbjct: 194 HLQTPESVAAHLDRVIEHLEQLERGDTKKRVNPVAGELTNLRLRRAVLPIVGRYAELKRS 253 Query: 202 LNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-G 255 +A + + + +++ + A L+ + P Sbjct: 254 RDAMDFADQMALAAQLAMTFDDIGAIERARHRVVLLDEFQDTSEAQLALLKALYVAPGET 313 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + V D H W + + + Q L + + Sbjct: 314 SAVTAVGDPHQSIYGWRGASATTLTRFAVEFGDPDPAQKL------DLSTSWRNDSAVLA 367 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 V+N + S+ +E V + +EA IA Sbjct: 368 VANHLAQPLRAASRVK-------------VEPLASRPGAGVGAVEVARLTTAADEADHIA 414 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 L +A++ R V L GI ++ L T + +LL+ Sbjct: 415 RWLATHRSRGAVSAAVLCRKRAEFATVTAALEEHGIPHEVVGLGGLLLTPEVEDVVALLH 474 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + L+ P+ + G + A + ++ RG + DL + Sbjct: 475 VVQDPARGDHLVRLLSGPMMRLGIADLDALAAWSRVQQRL-RGGAVARHEKDLAPDAAN- 532 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 A ++ E + L + V + + K Sbjct: 533 -APSIIEALDSLPPRGWVGDEGERLSDVARDRLAGLAATVRRMRGLTFLPLADLVLEAEK 591 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 ++ + E+ + +++ FS+ + + ++WI G Sbjct: 592 ALGLDIEVLSRPEYTPAAARAHLDAFGDVAAQFSQSADRATLGGF--LDWIKAAIDEERG 649 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK------------------- 656 + ++ ++ L +D + + L E +P Sbjct: 650 LDRGYADATPDAVQVMTIHAAKGLEWDVVAVPALVESTFPAHNLHSPSFKDGQWRISAPK 709 Query: 657 -----NTAKNPFLSRVMQSDLNLKTAEKYI-------------------------GQAAH 686 ++ L ++ D + + + Sbjct: 710 DKGWLAGLQDGGLPYELRGDRDGLPEFGWRSAVGWDELAARLEEFAVSGGEHAVAEERRL 769 Query: 687 DFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + A RH + + P + SR+L + L + Sbjct: 770 AYVAATRARHALLLTASVWSRPKTPRVTSRFLDEVRELASVEGSPVRILEWVDLPVPPED 829 Query: 745 LDYTTKQ-------------------PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 K ++ + + + + + Sbjct: 830 GSPLVKPGTEDGHEFVWPVDHLGHRRVRADAAARAVTEASEGPESTSATVGPWARELDLL 889 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNII--TELIKKRINKNTPEINHLMKQ------ 837 A R + + P +L + ++ Sbjct: 890 LAERARRASRHDDIVELPSHLSTSSLVAFATDPERFAAELRRPMPSAPAQAARRGTAFHA 949 Query: 838 IIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 I+ H+ + + D + + FLE + E I + + Sbjct: 950 WIEEHYARAAIVDLFDLPGSADEDPMGDAELPAMRERFLESPWAAR---EPIEIETALET 1006 Query: 890 AIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 ++ G+ + G D + G I D+KTG P ++ QL+ A Sbjct: 1007 VVD--GVAIRGRIDAVFADVEGSDWVIVDWKTGRKPSG-EVARMRALQLAAYRIAWAR-- 1061 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 +D ++V+ FY + + ++ + Sbjct: 1062 LRGVDPQRVSGGFYYAGTGETVWPVLADEAEISDL 1096 >gi|170017500|ref|YP_001728419.1| ATP-dependent nuclease, subunit B [Leuconostoc citreum KM20] gi|251764605|sp|B1MZM3|ADDB_LEUCK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|169804357|gb|ACA82975.1| ATP-dependent nuclease, subunit B [Leuconostoc citreum KM20] Length = 1171 Score = 141 bits (354), Expect = 7e-31, Method: Composition-based stats. Identities = 105/963 (10%), Positives = 257/963 (26%), Gaps = 142/963 (14%) Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWL 182 DI++D + P+ + L + + EDL + + + Sbjct: 107 DILRDYAAQLPIF--ARMQSKAGFVTTLVAQLVELRASRISPEDLLTILNQESDDDTFLR 164 Query: 183 LAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 L I + +++ + + L G G Sbjct: 165 QTLSGKLRDLAIVADALDKKMGHTYITQQEVLSFFATQLATTQLKNVAF---YFDGFNGF 221 Query: 239 I-PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 P T ++ +A +P +L ++ + + T Q + Sbjct: 222 TSPETQVMIELMARYPVTVALLGDVEKLGSQQPGDLFYKPMTTAQRLAQFTKIANQQVVW 281 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 ++ ++ + +S + ++ + + + N + + Sbjct: 282 QV---------------------PTQARCLDESIISVMSAWEKLGEYRQF---NSENKKT 317 Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGIN 412 ++A A+N E +A +R L D + ++ D + + +F + Sbjct: 318 NLAAFVAENTMVEIQEVARRIRQLLVAQPDLRLRDILILARDLTPYTGHIPEVMQQFDLP 377 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYLSRA 467 + ++ +L +LL + + + ++K L + E Sbjct: 378 YFLDTDQKMTNHPLVELLLNLLRPAKERFQYQQVMAILKTGLLRPYTDGSLVPEGDFFDI 437 Query: 468 KNALELVALRGNKNSYDIMDLKS--LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV- 524 + L+ DL + + + + E V Sbjct: 438 VSYLDNYLYANQPFERTWRDLDHPFTLFTVSEDEDDEDARVVLDDKTVNRRIETLRRFVI 497 Query: 525 ---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 D + Q + T + L T+ ++ + EE Sbjct: 498 DAFDSLQQQLNQAQTMRQAATLIILWLEKYHVTEAILSQRDTLLAAGELSRSR-EGEEVW 556 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ I+ + ++ I+ +G T L I + ++ Sbjct: 557 EMMTQTLDDIVAIDGDERFELEKFKAILVAGFEGATFSGIPNNLDQLTISEAGIVQSNDY 616 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------KYIGQAAHDFE 689 L G P ++ + + E + + + F Sbjct: 617 QYLFFIGGTRNNLPAQLKSRALINDAERLIVQPALQENSTPKYLQNTAQQQMAEENLLFY 676 Query: 690 MANGT--RHLIYTRSLRENNIP-TIASRWLQRL--------------------------- 719 A ++++ + + + S + +RL Sbjct: 677 GALTAATKNIVLSYPALDAGGQISDMSPFFKRLVDAFNITVNKVTATPATSQALLKYYVG 736 Query: 720 ---LVLGGTDFFDNLKKRGQCYLDW--------TRKLDYTTKQP------HYKRPKPFPP 762 LG +++ Y +L+ P +P+ Sbjct: 737 SVRSTLGELVKIAASQQQTSAYQALRNTINQSEPERLERVLSAPNYKNQTETLKPELVQA 796 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L + S S+++ N+P A + + L L + GTL+H + ++++ Sbjct: 797 LFGETLNMSISQLESYYNNPLAYFLQYGLALKER--LTNRLNVAQTGTLYHAVFEGVVQQ 854 Query: 823 RINKNT---PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 I + ++Q++ + + P ++ + + +L Sbjct: 855 LIIQQLSLRDISQKALQQLVADNMAEITAQPAYQMLQETGKMRATQHYLAKVSEILAVNM 914 Query: 870 HEEKIQSSIEKIFVNIPAK-----------MAIESIGIHLTGFADRID-LLKSGFV-DIT 916 + + V ++ +HL G DR+D S I Sbjct: 915 QRAARVNHAQPKAVERLFGFPNRQSLPALVVSTPQATVHLRGKIDRLDSQDPSQVYGTII 974 Query: 917 DYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 DYK+ A QL A + + Q+ + F+ ++ + Sbjct: 975 DYKSNGKHFDWGQAYDGRQMQLLTYWQAAQLSA-EQLGIEAIGGAFFAKIAPEKLTIKDF 1033 Query: 976 NDK 978 Sbjct: 1034 KGD 1036 >gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M] gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M] Length = 1180 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|146343946|ref|YP_001201802.1| hypothetical protein pQBR0054 [Pseudomonas fluorescens SBW25] gi|146187758|emb|CAM96086.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 907 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 119/872 (13%), Positives = 248/872 (28%), Gaps = 105/872 (12%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 K W E + + A +PV +A +++ + I +T Sbjct: 63 KWIETTWLELMPDEQALNPVQE-LATVKSVIDQSDLLPSNMI---------SSTNAARRV 112 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + L G+D + E + + QY L L + + Sbjct: 113 GVAYSQVNKYLIGMDSD--RFRFKEEFEAFLQWKTQLDSVCGAKQYVFRAHLPTLLL--K 168 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 +K E ++S + D + I + + + L+ + N Sbjct: 169 AIKAGDVQPPERVIIVGMMSLNPAEKAVFDALEDLGTDVIIVSAEGDKTTPRLVRSHNNA 228 Query: 369 EEAISIAIALRMSLDEN-------KKKSALITADRNLARRVKLELTRF------------ 409 E + +A + L + ++ R+ + L+ Sbjct: 229 SEMLEVAQWVSNHLLPFVDAPHAAPSLAIVVPDIRSYKGPLIDALSLHTSPGSLMPAGPD 288 Query: 410 ---GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 DIS+G L + LL+ D + +++ E Sbjct: 289 GETRAPWDISSGATLGSRPMIRAAMDLLSITPDKADSETFSRVLRSRWIAGHVGESATRA 348 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + L N + + + Sbjct: 349 LLD-----------------------LWFRDNLGLNMGGKDFLRAIGAYKGDAVPDFRKR 385 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + LV+ + + S+W L ++ +L + F+ + Sbjct: 386 FGGLLEKLVSGEQ-------SRYPSEWADHFTEALNDMGWPGQSELDSANFQTLNAWAEA 438 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 L + ++D +P+I + + ILG ++ LNFD L + Sbjct: 439 LAMFRTLDAQLGTVQYERAFMWLREVVDTRQFQPRISHLAPVSILGYEDAIGLNFDALWI 498 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA--EKYIGQAAHDFEMANGTR-HLIYTRSL 703 G + V P +PF+ +Q D + A E + A + + + Sbjct: 499 VGASNNVLPGRAEPSPFIPTDLQIDAGISDASSEGMLAYAQSVVSALLSSSADVTVSCPS 558 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 I + L L+ +G D KLD + + + Sbjct: 559 HNEKGAAIGASEL----FGAWPATAPTLETKGDFLDDLMGKLDRNNYEQ--EEVPAVSDI 612 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 E K P+ + R L+ + P D +GT+ H ++ + + Sbjct: 613 ELTDIKGGVRIFKDYAESPFFSFVRNRLRANMFPQPIIGLDPRIQGTMIHLVLEKFWTEV 672 Query: 824 INKNTPEI--NHLMKQ--------IIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHE 871 + + +K + K + + + + ++ +LE E Sbjct: 673 VTSKALKAFSVAELKAKVQHHTQLASEDLLYKLIWRYGMKLIMLEQRRIVDLTIEWLELE 732 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD---RIDLLKSGFV---DITDYKTGDNPK 925 +K + E I + + + + ++ D RI L V + DYKTG + Sbjct: 733 KKREFEFEVIGFEERHDIVVGQVPLTVS--LDRRERIFLNDEQTVSRSVVFDYKTGQEMR 790 Query: 926 KET--AQKLIDPQLSLEA-------AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 + A L +PQL + A A+++ + +L + + F + + Sbjct: 791 MNSLNASTLTEPQLPIYATKIDLSVASVEPIDGIVLAQVNQKSLGF-HARSNFSANLVEG 849 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPF 1008 K + + S+K L + F Sbjct: 850 KKARQEDVDTSDKWEAQKDAWNRQLDSMSAGF 881 >gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941] gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19] gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941] gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19] gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] Length = 1180 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAVPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|261837794|gb|ACX97560.1| hypothetical protein KHP_0349 [Helicobacter pylori 51] Length = 778 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 133/389 (34%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLSDKKNLQKHYYYQLFKNSKEIALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G L H ++ E+ + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAIGNLLHELLKEVYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + + N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKMADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + F+ L++ ++ Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732 >gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] Length = 916 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 111/957 (11%), Positives = 271/957 (28%), Gaps = 140/957 (14%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRS 62 + P V P + R ++ + + ++P ++ + T++A EL++ Sbjct: 23 TEGPLVVVAGPGAGKTRVLVE-----RVAYLVKRKGVSPE---NILVITFTEKAAGELKA 74 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 I G + ++ I ++ + + + Sbjct: 75 RLINCVGLDAELM-QISTIHSFCSKVLSDHPE-------------------EHEFGAGFE 114 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLA--DIIDIIETEEKKWEDLHALKNEKYGMW 180 + D L + I + + + + + + E+L KY Sbjct: 115 ILDEESQLIFLRTVFYKIGLDRYMKMGEVHRAIEFFNRCTENCIEPEELINALRRKYPD- 173 Query: 181 WLLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLMKGT--KGPIIIAGS 235 + + + E L E L+ + L I+I Sbjct: 174 -REEYQGIAVCYARYLELLREQKKIDFPGLEKEVYLLLNSSERVLESVRKKYRYIMIDEY 232 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 + P ++ +A + V+ D + T ++ Sbjct: 233 QDTSPIQELILREIAGKNSSICVV--GDEDQSIYGFRGATPENFIRFREEYDAEVVTLED 290 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 + + + + R E I ++ Sbjct: 291 NFRSRAGIVLTADSFMR----------------------------GERHYEKTIKPVRDG 322 Query: 356 FSDVALIEADNEREEAISIAIALRMS-----LDENKKKSALITADRNLARRVKLELTRFG 410 +DV ++++ + EA +I ++ + E + L + RN A +V EL R G Sbjct: 323 GTDVVILKSRDVNSEARNIVSLIKKLKSSGKIPEYGYVALLFRSVRNHADKVLAELRREG 382 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I + + L + + + Sbjct: 383 IPYIVRGDGSFLKRYEVRSMLYFLAYVDPPDYG-----------------------GRFR 419 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 ++ + +DL L + + N + + SR E+ + + IL Sbjct: 420 KWDGWWNISRFRGEFLDLTGETLRALESLDRNCRLSDFTSRRELEEIGVHGEDAEKILGL 479 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + ++ K S + ++T + + ++ + +L + Sbjct: 480 NR--IRHEVGKGSLTVLSTFYSILEVTGYLRRLIEDGSDSSRAKIFNLAKLSSLIDRYEA 537 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 I + + ++ ++ + + + +++ I+ +++ L F + + + Sbjct: 538 IKPGARIQ--DLLWYLYLLPTHLHHDEAALEDP--ASVKIMTVHQAKGLEFPVVFICSVI 593 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIP 709 G +P K + + +L L E + + LI + + R N Sbjct: 594 NGRFPVKRRKERD-TIPIPGELLLSPGEVPDEDRRLFYVAMTRAQDALIISTAPRINTRK 652 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S ++ L G D +R L+ +P Sbjct: 653 VGVSPFITDLREKCGIYECDCT--------SVSRCLER--------------EWSEEPLR 690 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 +FS + P+ + F + G + H + EL N + Sbjct: 691 INFSALFTYEECPFRYMLIYHYGFVYPETFMQR-----YGIILHRCLEELHLAMKN-SEE 744 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 L+++I++ + + + + ++ + + + E + V P Sbjct: 745 INGALIRRIVERCWIPMGRDDKVK---KRRLERELLNY--YHDTRDHTGEVVSVEEPFS- 798 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 I I + G D I + G +++ D+K + ++ QL AL+ Sbjct: 799 -IPDTDIIIEGRTDLIIRTRDGELELVDFK--AREHGGVERMALEYQLRTYEYALRE 852 >gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] Length = 1180 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2] gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1] gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3] gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2] Length = 1072 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|208434307|ref|YP_002265973.1| hypothetical protein HPG27_341 [Helicobacter pylori G27] gi|208432236|gb|ACI27107.1| hypothetical protein HPG27_341 [Helicobacter pylori G27] Length = 773 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 60/395 (15%), Positives = 134/395 (33%), Gaps = 51/395 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + +S S + + Sbjct: 494 NLHIEPIKDAYTLFATAPLKDYQEEEIKAAIPKD--------------FNFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP-----QLSLEAAALKA 946 G DRID + + DYK +T ++ + P Q+++ A ALK Sbjct: 649 KGRIDRIDKTADNEIILLDYK---FKSDLKLDNMSKTQREGLSPISTDYQMAIYAFALKN 705 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + F+ L++ ++ + Sbjct: 706 LGYKG-----PIKAFFYDLRKGELLEEDELTLQAK 735 >gi|265983090|ref|ZP_06095825.1| double-strand break repair helicase AddA [Brucella sp. 83/13] gi|264661682|gb|EEZ31943.1| double-strand break repair helicase AddA [Brucella sp. 83/13] Length = 847 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 89/830 (10%), Positives = 201/830 (24%), Gaps = 93/830 (11%) Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------E 220 L LK + L A + + + + + A + Sbjct: 3 LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 62 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMS--------------------TVANHPNGAIVLP 260 + + I++ + + P +++ V + Sbjct: 63 YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 122 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNV 316 G I+ +++N S + + + + +D + + E + L Sbjct: 123 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGA 182 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + R + + + + + ++P Q V L A IA Sbjct: 183 TVHSAIRDKEPGEIEIWDMLTPEMVEEPDDWRVPVDQLAAPAVRL---------AEQIAA 233 Query: 377 ALRMSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +R LD + L+ + L + + + + L++ Sbjct: 234 TIRYWLDRGELIPGQNRKIAPRDIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSH 293 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L +L + + +D +++A L+K PL + + + Sbjct: 294 IAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASR 353 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ +N + A +L + P ++ Sbjct: 354 HDAELAQIHKLLSRWRNMADTMPVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQN 411 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + L+ + L + + ++ + G+ + Sbjct: 412 YALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF----- 466 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 L+D + ++ L L + Sbjct: 467 -------LVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLK 519 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +R + L + GTR T + S + Sbjct: 520 NRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVA 579 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + + + + +P PR + S LI Sbjct: 580 ARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEE 639 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + RGT H ++ L K + +I Sbjct: 640 PPLDLSSPVLEPGTGAPAF-ALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD--- 695 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIH 897 ++ H +F + + I Sbjct: 696 ------------WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHA 743 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 ++G DRI + +S V I DYKT P K QL+L L+ Sbjct: 744 VSGQIDRISVDES-RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLR 792 >gi|121594697|ref|YP_986593.1| exonuclease-like protein [Acidovorax sp. JS42] gi|120606777|gb|ABM42517.1| RecB family exonuclease-like protein [Acidovorax sp. JS42] Length = 856 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 101/749 (13%), Positives = 201/749 (26%), Gaps = 77/749 (10%) Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + + + L + + Sbjct: 140 WGEAARALLPAAGDGGALRLEAAAARIALEWVLASRHVGDVLFESGVRAAVPLLVVVQGF 199 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIEADNEREEAISIAIALRMSLDEN 385 ++ + + + V L + +EA A + L + Sbjct: 200 QPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLHAVPDAEDEAQRAAACVLQHLAQG 259 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + AL+ DR L RR+ L G + G LSTT ++ L ++L A A Sbjct: 260 QAPVALVANDRALTRRISALLGGAGAAVHDENGWLLSTTHAAARLMAVLQACAWDATADA 319 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + +K A ALE R + + L + Sbjct: 320 VLDWLK-------QSPAVDGAALRALEHWLRRAGARHWSGAATQLQALAERRPAEAALAD 372 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 R + + + + + G +++ LQ+ Sbjct: 373 QVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQDEAGARVLAEL--RLPEGLQDDL 430 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 D G+ + ++ + +++ +P Sbjct: 431 QDMD-------------------------GAGARMALADFTRWVGEVLECARYRPAYVDD 465 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + + +L + F L+L G +E ++ + L L T + Sbjct: 466 APVVVLPLPQLLARPFAALVLPGCDEKRLQAAPEPPGPWTQAQREGLGLPTRDLLAAAQR 525 Query: 686 HDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + A + + R E P + S +Q L + G + + Sbjct: 526 AAWRQALRIERVDLLWRVGDEGGEPLLPSPLVQALRLDGTGTDGADPR------------ 573 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + + RP P + + S S L + PY +A R L+L D Sbjct: 574 VTRSVPVAPTARPLPVGA-QLPVQRLSSSAYSDLRHCPYRFFALRQLQLQEDDELDAGLD 632 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWR 857 + D GT H ++ + + T + + +E W Sbjct: 633 KRDFGTWLHAVLQHFHEALQDAPTGDAAARTALMDEAAARATRELGLQEGDFLPYASGWP 692 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-LLKSGF---- 912 L +HE + + + L G DR+D + G Sbjct: 693 ALRAGYLEWLGKHEAAGACFRQ-----AELRARQPLGALELVGTLDRVDAVRPQGGGEPL 747 Query: 913 VDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + DYKT D + + D QL+ AA L+ Y+ + ++ + Sbjct: 748 ALVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQD---------DTLRAAYVNVGERGE 798 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVT 999 D + D L + ++ I Sbjct: 799 TRLHEQDDVVHLRDLLLDGITHDMQRIAA 827 >gi|326443254|ref|ZP_08217988.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1238 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 71/604 (11%), Positives = 145/604 (24%), Gaps = 68/604 (11%) Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D L+ PL + E A GN+ +L + L Sbjct: 590 LDTGTALALLTSPLGGMDAADLRRLGRALRDEERA-AGNRVPPPSDELIARALAEPERLV 648 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + A L + L T +++ + W Sbjct: 649 THDRTYAFG----------AQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERA 698 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +L ++ E + +I + I +T+ Sbjct: 699 ALRGGAAGRNADRDLDAVCALFDTAA----RAEERTGGAGALNFLEEIDAQDIAADTLSA 754 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 755 RRSRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 814 Query: 681 IGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 A L+ T + SR+L L V +R Sbjct: 815 GALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGV--EPKDVTGRPRRP 872 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL----INDPYAVYARRIL 791 +L TT P R + ++ + L P + Sbjct: 873 LAVAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEP 932 Query: 792 KL----------------------------------DFIPHFKKDPDRTDRGTLFHNIIT 817 + G + H ++ Sbjct: 933 THSHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVH-VLA 991 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + + + FL + Sbjct: 992 DEVASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHAR--AALERFLRWHVMDRGG 1049 Query: 878 IEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLID 934 P + +E+ + + G DR++ G V + D+KTG P + Sbjct: 1050 RTTAATEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDRH-- 1107 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 PQL++ A++ G+ +D A+ + +A L +L Sbjct: 1108 PQLAVYQLAVREGALDTLDGTGTADAPDGAEASDTGPGPGEGRPESGAAPVPGGAELVHL 1167 Query: 995 IEIV 998 + Sbjct: 1168 RQAA 1171 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 87/773 (11%), Positives = 171/773 (22%), Gaps = 59/773 (7%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A V + +++A ELR G P + Sbjct: 41 TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 98 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ + D + Sbjct: 99 VRAHQDADLFAEPLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 155 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L W AA FL L Sbjct: 156 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 211 Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 ++ L+ A + + + PA RL++ +A G ++ D Sbjct: 212 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 269 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + + + + DV L Sbjct: 270 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 315 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + + + ++ + V E ++A LR + E Sbjct: 316 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 375 Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNAIFK 439 + L+ A V+ LT G+ ++ A +PL + L + L AI Sbjct: 376 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDGADVPLRHEPAVAPLLTALRAIAT 435 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIMDLKSLVL 493 V P R + G+ + D ++V Sbjct: 436 AASTTPTGAAVPGPRHGTAPVPAPEDRTPVRSDTPPAHGDPATAAPAADSGPPDAAAVVR 495 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + + + + A + + + + +D Sbjct: 496 TGTGASAAAGDLSGPVAGEAPDTPVPAPGGGPPGDIAADAVGGTSADAAAVVRTSAETDA 555 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS-------KIIETGSCIKANAIEWI 606 + + G A+ Sbjct: 556 AADGGPDRSGAGDGAGDGVSGPGARARAAVGRAWLDTGTALALLTSPLGGMDAADLRRLG 615 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + + + RL+ D G + A+ L R Sbjct: 616 RALRDEERAAGNRVPPPSDELIARALAEPERLVTHDRTYAFGAQQLGGLLRHARE-LLER 674 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 ++ L G A A A R L + L T Sbjct: 675 GGTAEDALWALWDGTGWPARLERAALR-----------GGAAGRNADRDLDAVCALFDTA 723 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + G L++ ++D + P + T S+ + Sbjct: 724 ARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRSKGLEWR 776 >gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1] gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2] Length = 1072 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYAVLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] Length = 1180 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 + + L L E L LA + + T R R+ E ++ + Sbjct: 184 ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132 L + + + ++ L + + + LE A + L Sbjct: 242 LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301 Query: 133 ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E + A L + D E + L L + L A + Sbjct: 302 EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243 + + + + A ++ + I++ + + P Sbjct: 359 LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418 Query: 244 RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 +++ V + G I+ +++N Sbjct: 419 QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478 Query: 284 SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 S + + + + +D + + E + L + R + + + Sbjct: 479 KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387 + + ++P Q V L A IA +R LD + Sbjct: 539 MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ + L + + + + L++ + L +L + + +D +++A Sbjct: 590 IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+K PL + + + + + ++ +N Sbjct: 650 ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + A +L + P ++ + L+ + Sbjct: 710 VFEFYARVL--GADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + + ++ + G+ + L+D + ++ Sbjct: 768 APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L L + +R + L + Sbjct: 816 LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 GTR T + S + + + + + Sbjct: 876 ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806 + + +P PR + S LI L + P Sbjct: 936 SLPPLPHDYRQPMEAEPGLPRPLTPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I ++ Sbjct: 994 RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 H +F + + I ++G DRI + +S V I DYK Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKK--ETAQKLIDPQLSLEAAALK 945 T P K E QL+L L+ Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] Length = 1180 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 + + L L E L LA + + T R R+ E ++ + Sbjct: 184 ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132 L + + + ++ L + + + LE A + L Sbjct: 242 LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301 Query: 133 ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E + A L + D E + L L + L A + Sbjct: 302 EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243 + + + + A ++ + I++ + + P Sbjct: 359 LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418 Query: 244 RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 +++ V + G I+ +++N Sbjct: 419 QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478 Query: 284 SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 S + + + + +D + + E + L + R + + + Sbjct: 479 KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387 + + ++P Q V L A IA +R LD + Sbjct: 539 MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ + L + + + + L++ + L +L + + +D +++A Sbjct: 590 IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+K PL + + + + + ++ +N Sbjct: 650 ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + A +L + P ++ + L+ + Sbjct: 710 VFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + + ++ + G+ + L+D + ++ Sbjct: 768 APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L L + +R + L + Sbjct: 816 LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 GTR T + S + + + + + Sbjct: 876 ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806 + + +P PR + S LI L + P Sbjct: 936 SLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I ++ Sbjct: 994 RRGTAIHMLLEYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 H +F + + I ++G DRI + +S V I DYK Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKK--ETAQKLIDPQLSLEAAALK 945 T P K E QL+L L+ Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|300173051|ref|YP_003772217.1| ATP-dependent nuclease subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299887430|emb|CBL91398.1| ATP-dependent nuclease subunit B [Leuconostoc gasicomitatum LMG 18811] Length = 1178 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 96/969 (9%), Positives = 252/969 (26%), Gaps = 142/969 (14%) Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL--KNEKYGMWWL 182 DI++D + P+ + + L + + +DL + + Sbjct: 107 DILRDYAGQLPIFARMQSKS--GFISALVKQLVELRASHITPQDLLQILNDTSNDATFLH 164 Query: 183 LAA----DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 L I + ++ + ++ M+ L G G Sbjct: 165 QTLGSKLRDLAIVADALDRKIGQEYITAQEVLPFFAMQLAGSSLKNVAF---YFDGFNGF 221 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A ++++ + +I L + + + P Y+ + Sbjct: 222 TSAEMQVITQLIAKYPVSIAL--------------LGQADRLGKQQDGDVFNKPMYTAQQ 267 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L+ I + V+ + +S++ + + E + N K + Sbjct: 268 LIHTAQIFEQKVQIN------APKQLRHLSQTTKQVLLA---WESLGEYRAFNGDKDHVN 318 Query: 359 VALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGINI 413 + A+N E +A +R L + + ++ D + +++F + Sbjct: 319 LQTFAAENTIVEIQEVARRVRQLLVSEPELRLRDILILARDLTPYTAHIPEVMSQFDLPY 378 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK-----YLSRAK 468 + P++ +L +LL + + ++K L + + Sbjct: 379 FLDNDQPMANHPLVELLLNLLLPQKDRFQYQNVMAILKTSLLRPYLDDALVSETEFFDVM 438 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + +L + + + IL Sbjct: 439 GYFDNYLYANRPYETTWRNLDKPFE-LFTVVDSVDEDDATITSDDSIVNRRIETMRRFIL 497 Query: 529 QCITPLVTYKTNKNSTCGNLS-ISDWTK------LTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + + + W + + + E+ Sbjct: 498 SAFDDLQRQLDQAKTMRQAATNLVLWLEKYHVDSAILEQRDVLLAAGELTRSRQ-GEQVW 556 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + I+ + + +++ G L I + ++ Sbjct: 557 QLFIQTLDDIVAINGDQTFDLTIFKEVLNAGFSGAKFSGIPNNLDQLTISEAGIVQSNHY 616 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------KYIGQAAHDFE 689 L G P T ++ + + E + + + F Sbjct: 617 KQLFFIGGTRTNLPAQTKTTALINDAERLIVQPALQEAGTTKYLQNTAQQQMAEENLLFY 676 Query: 690 MANGTRH--LIYTRS-LRENNIPTIASRWLQRL--------------------------- 719 A T + ++ L + S + +RL Sbjct: 677 GALATTTSGVTFSYPILDATGKISEISPFFKRLIDTFDITIKKISNVPSSSVDLLKHYIG 736 Query: 720 ---LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK--------------RPKPFPP 762 L ++ + + K+ + +P+ Sbjct: 737 TPRATLSELVKIIPTQQATAAFKAVQNAISQQQKERLMRVLQAPNYRNTIQTLKPEFVQA 796 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L + S S+++ N+P + + LKL + + GTL+H ++ ++++ Sbjct: 797 LFGEQLNVSISQLESYYNNPLGYFLQYGLKLKER--ATNELNVAQTGTLYHAVLEAVLQR 854 Query: 823 RINKNTPEIN---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 I +N + + ++ + + P +++ + + +L+ Sbjct: 855 LIQENISLRDIKTSALMMLLQQELASQLMLPEYNLLQENGKMRAIRDYLQKVSETLLTNL 914 Query: 870 HEEKIQSSIEKIFVNIPAKMA----IESIGI-------HLTGFADRIDLLKSGFVD--IT 916 + V + ++ + G DR D+ + V I Sbjct: 915 QRAARVNIARPSAVEKLFGFPDKNALPALKFSRGQINMQVRGKIDRFDIQDNTQVFGTII 974 Query: 917 DYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 DYK+ A + QL A + + + + F+ ++ + ++ Sbjct: 975 DYKSSGKQFDWGQAFDGLQMQLLTYWQAAQMNA-EALGVEAIGGAFFAQIAPQKRLISDF 1033 Query: 976 NDKKKYSAD 984 D Sbjct: 1034 KGDVSALLD 1042 >gi|296111904|ref|YP_003622286.1| ATP-dependent nuclease, subunit B [Leuconostoc kimchii IMSNU 11154] gi|295833436|gb|ADG41317.1| ATP-dependent nuclease, subunit B [Leuconostoc kimchii IMSNU 11154] Length = 1178 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 118/1004 (11%), Positives = 267/1004 (26%), Gaps = 157/1004 (15%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPIS------PANAIWLAK---------NL 152 ++ L RL +PD ++ + L + +S A A+ L Sbjct: 73 QVYSLTRLAWALLKDMPDAQPNIIQNTGLFIMVSDILREYAAQLPVFARMQSKSGFISAL 132 Query: 153 ADIIDIIETEEKKWEDLHALKNEK------YGMWWLLAADFLKIASKYWTERLVELNASS 206 + + +DL + N++ L I S T ++ + Sbjct: 133 VKQLVELRASHISPQDLLQILNDESHDDTFLRQTLASKLRDLAIVSDALTRKIGTERITQ 192 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + A L G A +++S + H I L G + Sbjct: 193 QEVLPFFATQLAATQLENVAF---YFDNFNGFTSAEMQVVSQILTHYPTTIALLG---DV 246 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + A+ L +L + L + Sbjct: 247 KKLGYQQAGDVFNKPMQT------------AQQLVYLTKQANQSVELIAATKPR------ 288 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + + ++ E + + + ++ A+N E IA +R L E Sbjct: 289 --QLSHTVNQVLSAWENLGEYRAFSGEVDKVELQAFAAENTVVEMQEIARRVRRLLVEQP 346 Query: 387 ----KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + ++ D + +++F + + + ++ +LL Sbjct: 347 TLRLRDILILARDLTPYTAHIPEVMSQFDLPYFLDTDQKMVNHPLVELILNLLVPAKDRF 406 Query: 442 DFMAIATLVKHPLAKFG-----FPEKYLSRAKNALELVALRGNKNSYDIMDLKS--LVLD 494 + + T++K L + PE + + +L+ + Sbjct: 407 QYQNVMTVLKTSLLRPYNQTSLVPEDEFFDVVSYFDNYLYANRPYEKTWRNLEKPFELFT 466 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLV----DHILQCITPLVTYKTNKNSTCGNLSI 550 + ++ ++ E V D + + T + + L Sbjct: 467 VVGQIDDDDATIVSDDAITNRRIETLRRFVLTAFDALQVALDQAKTTQLAATNLVTWLQN 526 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + L EE + L+ +I+E + + D+++ Sbjct: 527 FHVVDAITEQRDALILAGELTRSRQ-GEEVWQLLTQTLDEIVEISGNEPFDLSAFKDVLS 585 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ- 669 G L I + ++ L G P ++ + Sbjct: 586 TGFSGAKFSGIPNNLDQLTISEAGIVQNNHYKQLFFIGGTRSNLPAQAKTTALINDAERL 645 Query: 670 ------SDLNLKTAEKYIGQAA-----HDFEMANGT--RHLIYTRSL-RENNIPTIASRW 715 + + + Q F A +L + + + + S + Sbjct: 646 IVQPALKEAGVSKYLQNTAQQQMTEENLLFYGALAATTDNLTLSYPMLEASGKISEMSPF 705 Query: 716 LQRLLV-------------LGGTDFFDNLKKRGQCYLD---------------------- 740 +RL+ G D + L Sbjct: 706 FKRLIATFNVSVEKVASKPHNGADLLKRYIGTARATLSELVKILPTQRTTAAFKAIQNTI 765 Query: 741 -------WTRKLDYTTK--QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 TR L +P+ L S S+++ +P + + L Sbjct: 766 ADTQSDRLTRVLSAPNYKNTSQVLKPEFVHALFGDQLNVSISQLESYYRNPLGYFIQYGL 825 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN---HLMKQIIDSHFEKENL 848 KL + D GTL+H ++ ++K I +N + + ++ + Sbjct: 826 KLKER--ATNELDVAQTGTLYHAVLEGVLKALIKENMSLRDITTPDLLILVQQKMTEIIQ 883 Query: 849 PPHIDIIW--------RHLFHKISHSFLEHEE--KIQSSIEKIFVNIPAKMA----IESI 894 P ++ R ++S + L + + +S + V + + Sbjct: 884 SPEYQLLQENGKMRATRDYLQRVSATLLMNLQRSARVNSAKPSHVEQLFGFPSQASLPPL 943 Query: 895 -------GIHLTGFADRIDLLKSGFVD--ITDYKTGDNPKKE-TAQKLIDPQLSLEAAAL 944 + + G DR D+ V I DYK+ A + QL A Sbjct: 944 KFSRGKVNVQVRGKIDRFDIQDQAHVFGTIIDYKSSGKQFDWGQAFDGLQMQLLTYWQAA 1003 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + + + + F+ ++ + ++ D+L Sbjct: 1004 QMNA-QLLGVEAIGGAFFAQIAPEKQLIANFKG----DIDDLLA 1042 >gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] Length = 1180 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|260654705|ref|ZP_05860195.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1] gi|260630721|gb|EEX48915.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1] Length = 943 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 106/756 (14%), Positives = 215/756 (28%), Gaps = 84/756 (11%) Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 + SD+ + DV +++A++ R E +IA +L + Sbjct: 212 PDDGTSHAEASDLIAQLLPGEAPCPSPGGPVDVRILQAEDCRGEYETIARSLILWEATGH 271 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + L + + L ++ Sbjct: 272 DGLKI-----GHPWPGWEALALWVPV-----------NREGTALE-VMRRYGVPCRRART 314 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + P + A + ++ M L + + Sbjct: 315 LKITDTPFWRLSQ---MARAAASQNWDAFSTSELMAHPAMASGPLPDKSPSGRDAWRDAL 371 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 +SR + +D + T L S+ + T + Sbjct: 372 PEKSRDAFDDACAFAQEIQSGGTPETLLAALLRLGERRLLTF-FSNASSGTAGTDGTLDG 430 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + +++ K + + + +T DG +++P+ Sbjct: 431 QIAEYNGALDELRRKLLAIRETLRDLKSAGSRKLDGGDAWEYLTAWADGSSIRPQQPLGD 490 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----------NLKT 676 L + + L + GLN VWP + A+ P LS + + +L Sbjct: 491 ALELWSGSLPVFFSRPYLFVSGLNASVWPGSLAETPLLSDADRQTISGSPDAENAGHLPL 550 Query: 677 AEKYIGQAAHDFEMANGT--RHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKK 733 + Q F + R I + + + P + +L G Sbjct: 551 LSERRSQQEVLFRRLIASAGRLTILSWTTTDEKSRPLEPTPFLPSAYSDGWIASDPPTVS 610 Query: 734 RGQCYLDWTR--------KLDYTTKQPHYKRPKPFP---PLEAQPRTYSFSEIKQLINDP 782 RG L R ++ + + + + FP P P S I + P Sbjct: 611 RGLDELLVPRDQPLIGGVEVRSPLEFAPWPKDRVFPSPLPGAKVPSALPMSAIDAFADCP 670 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 Y Y + +L+L + DR GT H + + + I +L + +D Sbjct: 671 YRFYVQNVLRLAPQET-RPAYDRLLVGTATHKLWEMVWSAKNAGEKESIQNLSARFLDEA 729 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEH--------EEKIQSSIEKIFVNIPAKMAIESI 894 + P + + S + +E++ K+ + P + ++ Sbjct: 730 LLGPSGYPELGTPQLARQFALLKSQIRRCAALQDKIDERLAPHRVKVMIETPLSLQLDHA 789 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 G ADRID+L G + DYK G ++ + QL L A A + Sbjct: 790 FF--RGRADRIDVLDDGSFLVWDYKLG-----KSEKYAKSFQLPLYALACEKS-----TG 837 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK-----------------NLIEI 997 ++ A ++ L+ + K++ + +L L E+ Sbjct: 838 KRPAGWGFLGLRDGGCQASLVLPKEQSETCQAVAAALAEQTDCKTIPPAAEGPLPELAEL 897 Query: 998 VTLLQNGEQPFISHLRL-SEKSNIQSEYDHLARVAE 1032 ++ L + + S+ + Y L R E Sbjct: 898 LSSLDSCTAAGRWNPNWDSKDACRNCPYKELCRKEE 933 >gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28] gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|308061709|gb|ADO03597.1| hypothetical protein HPCU_02120 [Helicobacter pylori Cuz20] Length = 778 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 130/389 (33%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ L L T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLKLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + F+ L++ ++ Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732 >gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGFLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|15611404|ref|NP_223055.1| hypothetical protein jhp0336 [Helicobacter pylori J99] gi|4154868|gb|AAD05920.1| putative [Helicobacter pylori J99] Length = 778 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 130/400 (32%), Gaps = 56/400 (14%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKVVIADFNETCVPNLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E AS L L Sbjct: 437 DLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + ++ + ++S S + + Sbjct: 494 DLHTEPIKDAYTLFETSPIKEYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +KN + + + Sbjct: 540 TCKRRFYYHYIKRFKETPKDE---SNSAVGSLIHELLKEAYE--KDKNPHALEERLIWLS 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F + E + + I + + + I+ G+ Sbjct: 595 E---TRENVTPKERLDTLVALKKI-QAFYKKERERFNAEITILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP----------QLSLEA 941 G DRID + + DYK E +K + P Q+++ Sbjct: 649 KGRIDRIDKTADNEIILLDYK---FKSDLKLDSMSEKQRKGLSPIEIAQISTDYQMAIYV 705 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 ALK + + F+ L++ ++ + Sbjct: 706 RALKNLGYK-----EPIKAFFYDLRKGELLEEDELTLQAK 740 >gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2] gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1] Length = 1072 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 108/1061 (10%), Positives = 264/1061 (24%), Gaps = 146/1061 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y +S L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMG 160 Query: 138 LPISPANAIWLAKNLADIIDI---IETEEKKWEDLHALKN--------EKYGMWWLLA-- 184 + LA +A + + +W + W Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ +S D + + + Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAVESGDHDPADDRAEVAVGQPLVAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E + + Sbjct: 516 ---------YRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + L + + Sbjct: 567 IVEVDAHRADSPDDLVLR-----IEAITGLVDDMAAD--DPHRSAARRGHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + + + ++ L + +I+ + Sbjct: 620 ARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYT-----------------------------------RSLRENNIPTI 711 + + + R + T Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTP 799 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + + + + ++ GQ + D T +R A P + Sbjct: 800 WPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPRLT 859 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 TSQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDA 914 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKM 889 + + ++E++ + + L EE + + V M Sbjct: 915 EEIAE------LDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGATVLAVEKSFVM 968 Query: 890 AIESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 I + G D + G + D+KT + QLS+ A Sbjct: 969 TIGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA 1020 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 ID +V + + I A L+ Sbjct: 1021 --RGIDPSRVW-AVFHHVGANETISAEPLLDADQVAAILTA 1058 >gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330] gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330] gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 112/988 (11%), Positives = 245/988 (24%), Gaps = 103/988 (10%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 + + L L E L LA + + T R R+ E ++ + Sbjct: 184 ADVLQAAGETGLQSLLDEAVGRRNGLQLYLAELGV--GTHRMEALHRAFGFEPDAREDDL 241 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYP 132 L + + + ++ L + + + LE A + L Sbjct: 242 LADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKSTG 301 Query: 133 ESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 E + A L + D E + L L + L A + Sbjct: 302 EPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDNL 358 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPATA 243 + + + + A ++ + I++ + + P Sbjct: 359 LQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQW 418 Query: 244 RLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 +++ V + G I+ +++N Sbjct: 419 QVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAEL 478 Query: 284 SNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 S + + + + +D + + E + L + R + + + Sbjct: 479 KFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTPE 538 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NKK 387 + + ++P Q V L A IA +R LD + Sbjct: 539 MVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPRD 589 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ + L + + + + L++ + L +L + + +D +++A Sbjct: 590 IMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLA 649 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+K PL + + + + + ++ +N Sbjct: 650 ALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTMP 709 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + A +L + P ++ + L+ + Sbjct: 710 VFEFYARVL--GADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAA 767 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + + ++ + G+ + L+D + ++ Sbjct: 768 APEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAPK 815 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L L + +R + L + Sbjct: 816 LIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLI 875 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 GTR T + S + + + + + Sbjct: 876 ICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGAT 935 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RT 806 + + +P PR + S LI L + P Sbjct: 936 SLPPLPHDYRQPMEAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFAL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I ++ Sbjct: 994 RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 H +F + + I ++G DRI + +S V I DYK Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKK--ETAQKLIDPQLSLEAAALK 945 T P K E QL+L L+ Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1] gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 99/928 (10%), Positives = 225/928 (24%), Gaps = 99/928 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAECAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 ASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + + +P PR + S LI + Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLEPGTGAPAF-AL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I ++ Sbjct: 994 RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 H +F + + I ++G DRI + +S V I DYK Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGHDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKKETAQKLID--PQLSLEAAALK 945 T P K QL+L L+ Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLR 1125 >gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|297379579|gb|ADI34466.1| Hypothetical protein HPV225_0378 [Helicobacter pylori v225d] Length = 778 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 64/389 (16%), Positives = 134/389 (34%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKD--------------FSFSVSSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCRRRFYYHYIKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYTLEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + + N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRGNITPKERLDTLVALKKI-QAFYVKEKERFSAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID V + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEVILLDYKFKSDLKLDNMSEKQRGGLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + + F+ L++ ++ Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGKLLEE 732 >gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] Length = 1180 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 98/928 (10%), Positives = 224/928 (24%), Gaps = 99/928 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D + + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVKMGLDRLKEL---RLVRLNLAALALIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGELIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 ASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + +P PR + S LI + Sbjct: 935 TSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLEPGTGAPAF-AL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I ++ Sbjct: 994 RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKAW 1038 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 H +F + + I ++G DRI + +S V I DYK Sbjct: 1039 QSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKKETAQKLID--PQLSLEAAALK 945 T P K QL+L L+ Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLR 1125 >gi|325675756|ref|ZP_08155440.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] gi|325553727|gb|EGD23405.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] Length = 1125 Score = 140 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 114/1114 (10%), Positives = 277/1114 (24%), Gaps = 175/1114 (15%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD 83 + +V ++P V T++A Q+L + + S ++ + G Sbjct: 53 MAARVVWLVANGLVDPE---QVLGLTFTRKAAQQLTARIRKRLAKLAGSALVRDLDPSGS 109 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + ++ L + L P+ LL L + + DL Sbjct: 110 LRSRILASEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLD 169 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------AA 185 + + + + L+ LA+ + + +L L + Sbjct: 170 TDRNPASITE--SVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLL 227 Query: 186 DFLKI---------ASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPII 231 D L++ + + L A R E + ++ Sbjct: 228 DLLEVQHQRLDLLPLVQRLADTLRREGALDFGSQMSLAARVASEHPEVGRSERARFRVVL 287 Query: 232 IAGSTGSIPATARLMSTVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + A L+S++ G + D W + + +++ + Sbjct: 288 LDEYQDTGHAQRVLLSSLFGGGEDAGLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 347 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E ++ +S + R + +SK Sbjct: 348 DGTPAPKLELLTSWRNPPEALELANMISEPLRDRGVEVSKLR------------------ 389 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------SALITADRNLARRVK 403 DV L D E +A + + + +A++ A + Sbjct: 390 ARPAAVPGDVRLALLDTVETERAWVADRIAEQYEAARVDGAKPPTAAVLVRRNADAAPIA 449 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 EL G+ +++ L T + + ++L + A ++ A++ Sbjct: 450 EELRARGLAVEVVGLGGLLHTPEVADVVAMLRLVADPMAGSAAVRVLTG--ARWQIGAAD 507 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + +R + + + + + D + + + D A Sbjct: 508 IRALWKRAGELGIRSDHGATGAVTDAAALDDALGSALPGEQSEQAGLADALADPGPAHRY 567 Query: 524 VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + I + + G + + + + E Sbjct: 568 SEAGYVRICAVAAELASLRERLGQPLTELVAEVERVIGIGIEAQARTRQSEVGGAGREHL 627 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + S S + ++ + +G + +L ++ L + Sbjct: 628 DAFADVVSGYANRTSATLTGLLSFLAAAEHVENGLAPGEVEVAPDRVQVLTVHSAKGLEW 687 Query: 642 DTLILGGLNEGVWPKNTAKNPFLS------------------------------------ 665 + + + L GV+P + A +L Sbjct: 688 EVVAVPHLTAGVFPSSQASATWLGSVAELPPTLRGDRAYPGESADGVPVLDLENLYHRKD 747 Query: 666 -RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL 720 + + + + F +A P S +L L Sbjct: 748 LEDAIKSHKDALSTRRLDEDRRLFYVALTRTERALFVSGHHWAESGADPKGPSPFLLELE 807 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 L ++ + R +P R +L+ Sbjct: 808 ELV--STWEGERLGAIDVWAPAPDDGAENPLTATPRSALWPRDPLGRRRADVERGAELVR 865 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM----- 835 A L D D + ++ E ++ E+ + Sbjct: 866 G-----ALAGLGKAAPEPEAADGDPDNWAADVDALLAERRERGHGGTDVEMPAQLSVSQL 920 Query: 836 ------KQIIDSHFEKENLPP--------------------HIDIIWRHLFHKISHSFLE 869 + + + P ++ + + + Sbjct: 921 VDLAADPDALAARLRRPLPFPPNPLARRGTAFHAWVEQRFGATRLLDFDELPGAADTGVG 980 Query: 870 HEEKI-----------QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 E ++ + + V +P + ++ L G D + G + D+ Sbjct: 981 TETELALLQDAFLRSPWADRSPVEVEVPFETSVAGT--VLRGRIDAVFADADGGWTVIDW 1038 Query: 919 KTGDNPKKETAQKLIDPQLSLEA-----AALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 KTG P ++ + QL+ S + L + Sbjct: 1039 KTGAEPSAAN-ERAVVMQLAAYRIAWAELMAARQSRLTGRPVEP------PLDKVRAAFH 1091 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + + ++L + L ++T E P Sbjct: 1092 YVRTGRTIAPEDLPDA--DRLARLITTAGAEETP 1123 >gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2] Length = 1071 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 106/1059 (10%), Positives = 255/1059 (24%), Gaps = 145/1059 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + TK+A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y ++ L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160 Query: 138 LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184 + LA + W + Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ ++S D + + I Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E V + Sbjct: 516 ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + I + + + + + ++ L + +I+ + Sbjct: 620 VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712 + + + + Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + ++ GQ D +R A P + Sbjct: 800 WPVFADVGHGLIDNASRSVDDPGQADRVRVWWTDADALLKDARRHIDLQDEVALPPRLTT 859 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890 + + ++EN + L EE + + V M Sbjct: 915 EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968 Query: 891 IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 I + G D + G + D+KT + QLS+ A Sbjct: 969 IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ID +V + + I A L+ Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|326334225|ref|ZP_08200448.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1] gi|325948016|gb|EGD40133.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1] Length = 854 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 99/816 (12%), Positives = 214/816 (26%), Gaps = 91/816 (11%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ A+++ R D + +++A ++LR ++ Sbjct: 40 PGTGKTTTLVEAVVDRIENRGVRPD--------QLLALTFSRKAAEQLRDRVTARL-GRT 90 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 + + P LL ++ + L D + + Sbjct: 91 LSGAVSSTFHSFAYGLVRRYAPAELYAAPLT-----LLSAPEADVVLQELLADNPESVRW 145 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 + + A+ + +I + L AL E+ ++ A FL+ Sbjct: 146 PERFRMAVGTR---GFAREVQTVIARARERGLDPDQLVALGREEGIEEFVAAGWFLEQYL 202 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 + + I R AE + + + + P+ L+ +A Sbjct: 203 DVLGAQSAIDYPDLIMRGVIEAERHAAEL--RAEFACVFVDEYQDTDPSQVALLQALAGD 260 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 IV+ D + S + L R R Sbjct: 261 GRDLIVV--GDPDQSIYGFRGADVNGILDFPSQFLTRE----RRHAPVVALGTTRRFGSR 314 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 L S + V + + ++ D +R E Sbjct: 315 LLRASRSIAAGISVRGSIPASAYDTFRN--------PHPLASDPGRAEVLTFDTDRAETE 366 Query: 373 SIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427 IA LR + E+ + L+ + R +++ LT G+ ++ S PL + Sbjct: 367 HIADLLRRAHLEDGLDWSDMAVLVRSGRTSIPQLRRSLTAAGVPVEVASDETPLVREPAA 426 Query: 428 SILTSLLNAIFKL----------NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 ++L L + L+ PL + + Sbjct: 427 AVLLDALGVVVDADVESDLDERYVRPERCEELLTGPLGGLDATDVRALIRTLRARFPDVA 486 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ------------------------SRLS 513 + + S R A+ + Sbjct: 487 AHDLVRRAVLDPSFAAGRAASASERVETNTVESSADGDRVGLDTDSLVPHESGSTSRAGG 546 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E L + + L + ++W + +++ Sbjct: 547 ERVLGRVRRLAALLAEARAALKDGAGAEQVLWTLWDGAEWGQRLRAQVESGGPAARLAHR 606 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 +L ++ E S + + I +T+ K + S++ +L Sbjct: 607 DLDAVVALFDTAAKIEGRQEFTSVETF----LATLRAQEIPADTLADKGVRGSSVRLLTA 662 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD----------LNLKTAEKYIGQ 683 S+ L + +++ + EG WP ++ L + L T + + Sbjct: 663 HRSKGLEWGLVVVAHVQEGAWPDLRRRDSLLGPDRIAPALPDGRHGGLLPPLTRSAMLAE 722 Query: 684 AAHDFEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD- 740 F +A L+ T ++ SR++ L + L RG L Sbjct: 723 ERRLFYVAATRARSRLVVTAVKSPDDDGDQPSRFINELGLREDLIPDPGLAGRGGPALAR 782 Query: 741 --WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 W+ +L +P + P R++ Sbjct: 783 PTWSAELRRHRGRPRLSPSRCVRPPRGGCRSWPPPR 818 >gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3] gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4] Length = 1071 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 105/1059 (9%), Positives = 254/1059 (23%), Gaps = 145/1059 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + T +A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTNKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y ++ L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160 Query: 138 LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184 + LA + W + Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ ++S D + + I Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E V + Sbjct: 516 ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + I + + + + + ++ L + +I+ + Sbjct: 620 VRRSDPTMTITGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712 + + + + Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + ++ GQ D +R A P + Sbjct: 800 WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890 + + ++EN + L EE + + V M Sbjct: 915 EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968 Query: 891 IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 I + G D + G + D+KT + QLS+ A Sbjct: 969 IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ID +V + + I A L+ Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|89889932|ref|ZP_01201443.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89518205|gb|EAS20861.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 913 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 84/441 (19%), Positives = 153/441 (34%), Gaps = 44/441 (9%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + E L ++G LE+R L+++ +I+ +NEGV P + Sbjct: 475 DLRTVQYLFKQFLPQKKLDFIGEPVKGLQVMGLLETRALDYEHIIMLSVNEGVLPAGKST 534 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTIASRWLQR 718 ++ M+ L T A+ F S + SR+L + Sbjct: 535 ASYIPYDMKIKFGLPTYTDKDSVYAYHFYRLLQRCKNADFIYNSEPGSLGGGEKSRFLMQ 594 Query: 719 LLVLGGTDFFDNLKKRGQCY-LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 L + N + + L ++KR + +S S I Sbjct: 595 LETNNIANHKINHRLYANKITTETVNGLSIKKDDFYFKR-----LQQIAISGFSPSSITS 649 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE------- 830 I DP Y +ILK++ + ++D GT+ H + L IN+ E Sbjct: 650 YIYDPIDFYRSKILKINDVEEVEEDMAANTMGTMIHKTLEALYLPYINQILDEKHFKEIR 709 Query: 831 --INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-----EKIFV 883 IN + + P +II + + +++ + +S +K+ Sbjct: 710 SRINKTIHNAYLDSYHTAQDPQGKNIIMYEVAQHYVKKMIAYDQNLVNSGNTLIIKKLEA 769 Query: 884 NIPAKMAIESIG-IHLTGFADRIDLLKSGFVDITDYKTGDN--------PKKETA----- 929 + I++IG I L G DRID L +G I DYK+G P A Sbjct: 770 RYSTSLTIDTIGNIKLHGEVDRIDEL-NGRTRIIDYKSGMVNKSNVGLDPDNYEALIDGY 828 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK----KKYSADE 985 K Q+ + A + + + K F + + + +E Sbjct: 829 DKSKAFQVLMYAYLYSKN--NPFTECTAGIISFKNFKDGFIPFSVKIGRSFQAQPIDIEE 886 Query: 986 LSEKSLKNLIEIVTLLQNGEQ 1006 L K + LI+I+ L N + Sbjct: 887 L-NKFEEQLIQIILELYNNDI 906 Score = 81.1 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 67/260 (25%), Gaps = 44/260 (16%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L+ +T VP++R L + PII S+ D + ++ +L Sbjct: 19 LSKLTYVVPSRRVATFLNKTIATYLD-QPIFEPIIYSVEDFISHTAQVEIASDVDL---- 73 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 L + + D S I A + + I+ Sbjct: 74 --------LFDFYNSYLKIENNNTAD-----------SLDEFITWAPTILKDFNEIDRFL 114 Query: 164 KKWED----LHALKNEKYGMWWLLA----------ADF---LKIASKYWTERLVELNASS 206 D L LK + W + F L++ +TE Sbjct: 115 VPPTDFFNYLGNLKELEQ-GHWSILEPKTEMIEKYLHFWKRLELYYNQFTEDCTSKGIVY 173 Query: 207 PVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 +AE + + PI+ G A ++ N A + D + Sbjct: 174 QGLAYRLAFAKAEQQSKQYNKETPIVFLGLNALNKAEEEIIKIFLESEN-ATIFYDSDQY 232 Query: 266 IPTAIWNTITEKSTNITSSN 285 ++ + Sbjct: 233 FQENEYHEAGRFIRRYKNEW 252 >gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2] gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1] gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1] Length = 1071 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 106/1059 (10%), Positives = 256/1059 (24%), Gaps = 145/1059 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + TK+A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y ++ L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160 Query: 138 LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184 + LA + W + Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ ++S D + + I Sbjct: 341 QVLSLATNRRCADQIINAANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADILVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + + H+ E V + Sbjct: 516 ---------YRRARALAKARAKDDGLDPDDVDIHLSDAVMEGRPGGHERLQCAVKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + I + + + + + ++ L + +I+ + Sbjct: 620 VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712 + + + + Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + ++ GQ D +R A P + Sbjct: 800 WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890 + + ++EN + L EE + + V M Sbjct: 915 EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968 Query: 891 IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 I + G D + G + D+KT + QLS+ A Sbjct: 969 IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ID +V + + I A L+ Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99] gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] Length = 1180 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|254718137|ref|ZP_05179948.1| ATP-dependent nuclease subunit A [Brucella sp. 83/13] Length = 855 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 89/830 (10%), Positives = 201/830 (24%), Gaps = 93/830 (11%) Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------E 220 L LK + L A + + + + + A + Sbjct: 11 LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 70 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMS--------------------TVANHPNGAIVLP 260 + + I++ + + P +++ V + Sbjct: 71 YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 130 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNV 316 G I+ +++N S + + + + +D + + E + L Sbjct: 131 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGA 190 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + R + + + + + ++P Q V L A IA Sbjct: 191 TVHSAIRDKEPGEIEIWDMLTPEMVEEPDDWRVPVDQLAAPAVRL---------AEQIAA 241 Query: 377 ALRMSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +R LD + L+ + L + + + + L++ Sbjct: 242 TIRYWLDRGELIPGQNRKIAPRDIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSH 301 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L +L + + +D +++A L+K PL + + + Sbjct: 302 IAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASR 361 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ +N + A +L + P ++ Sbjct: 362 HDAELAQIHKLLSRWRNMADTMPVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQN 419 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + L+ + L + + ++ + G+ + Sbjct: 420 YALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF----- 474 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 L+D + ++ L L + Sbjct: 475 -------LVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLK 527 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +R + L + GTR T + S + Sbjct: 528 NRAEEEYRRLLYVGMTRAEDRLIICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVA 587 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + + + + +P PR + S LI Sbjct: 588 ARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEE 647 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + RGT H ++ L K + +I Sbjct: 648 PPLDLSSPVLEPGTGAPAF-ALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD--- 703 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIH 897 ++ H +F + + I Sbjct: 704 ------------WPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHA 751 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 ++G DRI + +S V I DYKT P K QL+L L+ Sbjct: 752 VSGQIDRISVDES-RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLR 800 >gi|325977975|ref|YP_004287691.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177903|emb|CBZ47947.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 640 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 65/510 (12%), Positives = 149/510 (29%), Gaps = 75/510 (14%) Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E+ +T + + ++ K + + + +I + + + + Sbjct: 55 HEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLV 114 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAH-----DFE 689 + G+ + +PK + +S ++ +N T + ++ + F Sbjct: 115 EPHTNKFVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFA 174 Query: 690 MAN----GTRHLIYTRSLRENNIPTIASRWLQRLL------------------------- 720 + T L+ + N S +L L Sbjct: 175 ALSLFNSATEELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYK 234 Query: 721 ----------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------- 759 L + + K+ + R L + P Sbjct: 235 ALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIELPLIKDNMQTKTVSA 294 Query: 760 ----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 +P + S S + N+ Y + + +L L + PD + GT H + Sbjct: 295 DVIEARFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIH--PDARNHGTYLHRV 352 Query: 816 ITELIKKRINKNTPEINHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 ++K N + Q ++ F+ + I+ S Sbjct: 353 FELVMKDDSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTAMILRD 412 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKL 932 + I+ ++ I + + G DR+D L G + I DYK+ N + Sbjct: 413 D-AQIQVESEEETFELMIA-NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTFDIQKFYNG 470 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + PQL AL+ + + Y+ +++ + +K + E + + Sbjct: 471 LSPQLVTYVQALRDKKGLS-ESEHIFGAMYLHMQEPKVDLSLVATTEKILENLAKELTYR 529 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 L E+ ++++ R ++ S Sbjct: 530 GL------FLEDEKAYLANGRYHLNDSLYS 553 >gi|88608061|ref|YP_506408.1| hypothetical protein NSE_0524 [Neorickettsia sennetsu str. Miyayama] gi|88600230|gb|ABD45698.1| conserved domain protein [Neorickettsia sennetsu str. Miyayama] Length = 779 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 18/266 (6%) Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + + K F P+E P+ S + I+ LINDPY Y R IL + P Sbjct: 527 QPIETVAVVKEKLFVPIEMLPKKLSPTMIELLINDPYRFYVRYILAIKETNSVVVKPGHK 586 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISH 865 + G + H + K R +K +I+++ + + +W KI Sbjct: 587 EFGYIMHKVFQSASKTRFSK------EEYTRILENELKTYATRYQYVKNLWLPRGLKILE 640 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 F + I+ + + I G+ L DRI+ LK V+I ++KTG P Sbjct: 641 QFATFHNRRLEEIDILENEKELSIFIAD-GLELFCRFDRIESLKEDTVNIIEFKTGTIPT 699 Query: 926 KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + + PQL L+ L+ + ++ Y + KK S +E Sbjct: 700 FKEISSFVKPQLPLQGLILQKN-----RNVRFNSMMYCK-----PSTEKVTVKKLQSPEE 749 Query: 986 LSEKSLKNLIEIVTLLQNGEQPFISH 1011 + K L + + +GE F+++ Sbjct: 750 TIAEIHKKLTTLAQIYLSGEFDFLAN 775 >gi|332664641|ref|YP_004447429.1| UvrD/REP helicase [Haliscomenobacter hydrossis DSM 1100] gi|332333455|gb|AEE50556.1| UvrD/REP helicase [Haliscomenobacter hydrossis DSM 1100] Length = 1041 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 107/1001 (10%), Positives = 258/1001 (25%), Gaps = 106/1001 (10%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT--ADLLLSYNLNPP 102 ++ T + +R +++ G + I + +L +L P Sbjct: 59 QNILCLTFTDAGVTAMRERLLQLIGPDGHRV-HIYTFHSFCNAVIQDNLELFGRQDLEPL 117 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 LE LI ++L +S + + + + D + Sbjct: 118 GD-----LEKVDLIRALIDELDVEHPLKRGQSDVYFYETHLQDFFQRCKMEDWTAEYVIQ 172 Query: 163 EKK------WE----------------DLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + + DL K ++ + + Sbjct: 173 QIDAWLASLPDRPEYRYQRKQGAQQKGDLKEAKIKEEQIRMQR-LRAAAALYPRYEAAKQ 231 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKG-----PIIIAGSTGSIPATARLMSTVANHPNG 255 + ++RA H +++ + + ++ + N+ Sbjct: 232 AARRYDYQDMILWVLRAFETHDYLLRSYQEQYLYVLVDEYQDTNGSQNEILLQLINYWET 291 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 V D + K+ + Q++L ++ L V+ + Sbjct: 292 PNVFLVGDDDQSIFEFQGARLKNLTDFYAK------YQHNLHTVV--LTENYRSVQGFLD 343 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + ++ + + S L + +N + K + + E N E I Sbjct: 344 AAGQLIQNNQLRIISHLQALG-------LNKNLVAAAVKGKATPLISEYPNRISEETDIV 396 Query: 376 IALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + +L + ++ A+I A R + L + GI + + L S Sbjct: 397 QQI-EALQQKGIPLQEIAIIYAQHRQVRNLLGLLEKKGIPYQTRRDVNILELPLIQRLRS 455 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 + + H + E L L + +DL L Sbjct: 456 -------------LLDYLHHETLQPHSGELRL--------FQILHAHFLGISPLDLARLS 494 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + R D L +T + C N + Sbjct: 495 THLARFPAD----VRPPWRELLLDHAALGELNLEKPAVLTNFAILLEELIADCLNEPLPT 550 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + + + + + + A + + + Sbjct: 551 LLEKLLNRSGFLQYILEQPNHAWQIQVLHTFFQYVREECQRRPHYSLAELLHNLHRMEAN 610 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + + +L ++ L F + + + W + +N + + ++ Sbjct: 611 RLPLALSRLSDDQVGVHLLTAHAAKGLEFTAVFMLDCVKDYWEPASGRNSYRFTLPETLT 670 Query: 673 NLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDN 730 + + + + L + + +++ + ++ LL Sbjct: 671 YSGEEDATEARRRLFYVALTRAKTFLHLSYARQDDSEKELQRALYIDELLSTQTLALEQK 730 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + +L K + + + S S + +N P A Y I Sbjct: 731 VLPAPLVLSTQLLRLQEQQKPSVAPQDRSMIEAILRNFRMSISALNTFLNCPLAFYYEYI 790 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLMKQIIDSHFEKENL 848 LK+ + + T GT HN + L + + + + + ++ Sbjct: 791 LKVPGLH-----NEATAYGTAVHNALQRLFDRMLLSPQRLFPSEKELLYFFEQELNRQRQ 845 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA-IESIGIHLTGFADRIDL 907 + R + L + V + + IE G+ LTG D+I+ Sbjct: 846 QLSLPSFER-RLE-LGKRQLGRYYQYYYGRWHKRVRVEYTIRQIEVDGVPLTGTIDKIEF 903 Query: 908 LKSGFVDITDYKTGDNPKKETAQKLID---------PQLSLEAAALKAGSFSQIDCRKVA 958 V I DYKTG ++ D QL + Sbjct: 904 YDQLRVGIIDYKTGS-HDGTKLRRPTDTNPYGGTYWRQLLFYKLLYEHF-DRSSRRVTFG 961 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSAD---ELSEKSLKNLIE 996 + Y+ + + ++ ++ + + Sbjct: 962 EIAYLDPTPDGQFPEVRLSFTPEDTAFMRQMIREAYAKIRK 1002 >gi|188527166|ref|YP_001909853.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470] gi|188143406|gb|ACD47823.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470] Length = 778 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 131/391 (33%), Gaps = 54/391 (13%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + + N+ P + KI +F E++ + I+ + + + I+ GI Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYIKEKERFNAKIKILDLEKSFETTIQ--GIAF 648 Query: 899 TGFADRIDLLKSGFVDITDY--KTG--------------DNPKKETAQKLIDPQLSLEAA 942 G DRID + + DY K+G + Q+++ A Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSGLKLDNMSEKQRGSLSPIEIAQISADY--QMAIYAF 706 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 ALK + F+ L++ ++ Sbjct: 707 ALKNLGYKG-----PIKAFFYDLRKGKLLEE 732 >gi|302869751|ref|YP_003838388.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302572610|gb|ADL48812.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1240 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 94/769 (12%), Positives = 188/769 (24%), Gaps = 56/769 (7%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVE 86 LVE + + + +R ELR G + P++++ Sbjct: 136 LVEAVAARVAEGVDPERILVLTFGRRGATELRHRIEARIAEGGHRVIREPLVRTFPAYAF 195 Query: 87 EKFTADLLLSYNL-NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 ++ ++ L + L+ + + D P Sbjct: 196 GLLRRAAAERGEPSPRLLTGPEQDLIIRELLDVVGEEPGDD-----PVGWPEDLRPALRT 250 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN-- 203 A+ L D++ +L L + W AA FL+ R V Sbjct: 251 RAFAQQLRDLLMRAAERGVGPVELARLGEKLGRADWPAAARFLREYVAVLALRDVSNRGS 310 Query: 204 -ASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 A P A + + + + + PA L++ VA G Sbjct: 311 VAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADTDPAQLDLLAVVAG--GGRS 368 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 ++ D T + ++ + L E L + Sbjct: 369 LVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLTTSYRAGPE----LLAAT 424 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + R P V ++ + E+ +A A Sbjct: 425 ARLARRLR---------------GPAGHRRLRPLPGVPAGTVEVLTFRSATSESAWLAHA 469 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTS 432 LR + + + + R L R + +PL + L Sbjct: 470 LREAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLL 529 Query: 433 LLNAIFKL--NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 LL + D A L+ PL R + L +AL L Sbjct: 530 LLRCALEPDRLDEEAAVALLHSPLGG--ADPLAERRLRQGLRALALAAGDRRPSGELLVE 587 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + D ++ L S Sbjct: 588 ALRDPAELATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWR--ESGLAERWA 645 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 T+ ++ R + L ++ + + + ++ Sbjct: 646 GAITRGRAATGEHETAQRWRAEAADRDLDAVLVLFDAAARFTDRLPGAR-TEVFLDHVLG 704 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ- 669 + + +T+ ++ + +L ++ L +D + + G+ EGVWP + L Sbjct: 705 QELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERLV 764 Query: 670 -----SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +GQ + + H+ +R+ R + +AS + Sbjct: 765 DVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQ 824 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 F + T P P P + Sbjct: 825 PSRFLHELAAADPPATGGGGTAPTGPNPTGPAPTGPNPTGPNATGNGPT 873 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 106/983 (10%), Positives = 225/983 (22%), Gaps = 52/983 (5%) Query: 15 SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 P R A L+ + P+ LA L + + Sbjct: 245 RPALRTRAFAQQLRDLLMRAAERGVGPVELAR-------------LGEKLGRADWPAAAR 291 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 + + + + LL+ L+ R +L + D ++ Sbjct: 292 FLREYVAVLALRDVSNRGSVAYDPAELVRAATGMLLDDPELLAAERRRLTHVYVDELADT 351 Query: 135 PLSLPISPANAIWLAKNLADIID----IIETEEKKWEDLHALKNE-KYGMWWLLAADFLK 189 + A ++L D + + + A L Sbjct: 352 DPAQLDLLAVVAGGGRSLVAFADPDSSTYAFRGADPAGVTTFPHRFRTASGAPAAQVTLT 411 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG-PIIIAGSTGSIPATARLMST 248 + + E L + A R ++ S S A Sbjct: 412 TSYRAGPELLAATARLARRLRGPAGHRRLRPLPGVPAGTVEVLTFRSATSESAWLAHALR 471 Query: 249 VANHPNGAIV--LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 A+ +G + L + + T + P + + L + Sbjct: 472 EAHLLDGVPWSRMAVLVRSTGRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLLLL 531 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R ++ P +R ++ ++ + + Sbjct: 532 RCALEPDRLDEEAAVALLHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELLVEALRD 591 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E +A R + + L+ R A R + + +G+ Sbjct: 592 PAE----LATIERRWAAPAQAVAHLLATARETAGRPGATVEDVLWAVWRESGLAERWAGA 647 Query: 427 SSILTSLLNAI--FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + + + A + L F +R + L + Sbjct: 648 ITRGRAATGEHETAQRWRAEAADRDLDAVLVLF----DAAARFTDRLPGARTEVFLDHVL 703 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 +L + L A + + + + E +AV V + L Sbjct: 704 GQELPADTLAAAADRGDAVRLLTAHAAKGLEWDLVAVAGVQEGVWPDLRLRGSLLGSERL 763 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 L+ L + L+ + L + + + + E Sbjct: 764 VDVLAGRADGAGLRASLVGQTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEE 823 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + + + G + Sbjct: 824 QPSRFLHELAAADPPATGGGGTAPTGPNPTGPAPTGPNPTGPNATGNGPTGNGPTRTAMR 883 Query: 665 SRVMQSDLNLKTAEKYIGQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 ++ + G AA + L + + A+ +R G Sbjct: 884 GGIVDGPVPHGDEHPQDGPPAALPVTLPPRGLTLSALVAELRTAVTDPATPITRRHAAAG 943 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 G DW + +P +P + S ++ + Sbjct: 944 ELARLAAAGVPGAHPDDWWGLRGLSDDRPLVDEGEPV--------RVTPSAMESALRCSL 995 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 R G L H + + L++ + Sbjct: 996 RWLLERHGGSGPASA------AQGVGNLVHAA-----AMLAEDASVDREALLEYVAARFD 1044 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 E + R + L + I ++ S I LTG D Sbjct: 1045 AIELAARWMAGPERQRAEAMVDKLLRWLAGNPRRLLAIEHEFAVRLDDPSRPIELTGRVD 1104 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 R+++ G + + D KTG + + PQL AA++AG F++ + + Sbjct: 1105 RLEVDDEGRLVVIDLKTGKSTAVTEREVAEHPQLGAYQAAVEAGGFAEFG-EEPGGAALV 1163 Query: 964 RLKQKFKIDCITNDKKKYSADEL 986 +L + E Sbjct: 1164 QLGTGARDAKEQTQAAAGEGPEA 1186 >gi|315637851|ref|ZP_07893041.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] gi|315482092|gb|EFU72706.1| conserved hypothetical protein [Campylobacter upsaliensis JV21] Length = 794 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 68/355 (19%), Positives = 118/355 (33%), Gaps = 38/355 (10%) Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + K + +G LESR L+FD +I+ NE + PK + FL+ +++ L + Sbjct: 414 SFKQSYVGGGAVTAMGILESRGLSFDGVIVVDFNEDLIPKRSVNELFLNNEVRTKAGLIS 473 Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 EK +E + + E SR L+ L + K Sbjct: 474 YEKRENLQRFYYEQLFKNAKKISICYVENEEKS---RSRLLEDLEFRLDLTKEFSQKA-- 528 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 YL+ + + P S+S + + + + I L Sbjct: 529 --YLNALKLNYKAKQIKLEPPQAPKLKHNLFATPLSYSRLTLFLESKRTYFYKYIKHLKE 586 Query: 796 IPHFKKDPDRTD-------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 K D + G H I+ K + +++ S EKE Sbjct: 587 PRELKMDIKEQNDRKRLKNLGIFIHRILELYYKHYDFFD--------EKLFTSLLEKEGQ 638 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNI--PAKMAIESIGIHLTGFADRI 905 +D + L F + E++ I + + + +E I LTG DRI Sbjct: 639 KEGLDALDLELLKIKFKEFAKKEQERFKQGYHIKHLELNMDKSIILEGQRIELTGKIDRI 698 Query: 906 DLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL---KAGSFSQIDCRK 956 D + G + I DYK+G P+K QL+ +F ++ + Sbjct: 699 DSNERFGEL-ILDYKSGKIPEK-------SYQLAFYKLLYDENAHAAFYDLNDFE 745 >gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1] Length = 1071 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 106/1059 (10%), Positives = 255/1059 (24%), Gaps = 145/1059 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL-----PI 77 ++ +V ++P + TK+A EL + + P Sbjct: 49 TTVMAARVVWLVASRLVSPE---EILGLTFTKKATAELSERIESNLTRVGLLTSEQPRPT 105 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + + + F L+ Y ++ L+ AR + + + K + + Sbjct: 106 VAT-----YDSFAGTLVNDYGAWDGINTGAHLITAARAYQLAAEVIMGLNKAPLAATHMG 160 Query: 138 LPISPANAIWLAKN----------LADIIDIIETEEKKWEDLHALKNEKYGMWW---LLA 184 + LA + W + Sbjct: 161 PTFIAQAVVKLAGAMASHDASPGKVRRADARWRQMLLDAPTKRGGDRYADIDKWLSRVDE 220 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSI 239 + L + E + + H + +++ + Sbjct: 221 REELLDLVAAYQNLKKERGLVEFGDRMVQALHLVTHHPRVGEELRARYRVVLLDEYQDTS 280 Query: 240 PATARLMSTVANHPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A A +++ + + P+ G V+ D W + Sbjct: 281 SAQADVLAALFSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNKEGTPA 340 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + + S E+ ++S D + + I Sbjct: 341 QVLSLATNRRCADQIINVANVASEELRQTLSSAAESDDHDPAGDRAEVAVGQPLIAPEGN 400 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFG 410 +V + + +E + A L + + +A++ + + LT Sbjct: 401 RRGEVTVAAYPDWVKECQACADTLVEAKERGTIARWSDAAILVRRNSDVADLYDSLTARD 460 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + L +++ + L + D A+ATL+ P + + Sbjct: 461 VPVRFANLSGLLRLPDIAMVVAHLRLLVDRQDDAAMATLLAAPRLGLSTDDLAMV----- 515 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + D + H+ E V + Sbjct: 516 ---------YRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRPGGHERLQCAVKRVCAE 566 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 I + ++ + + + ++ D + + L + + Sbjct: 567 IVEVDAHQGDSPDDLVLR-----IEAITGLIDDIAAD--DPHRSAARRDHLDALWNAIRE 619 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + I + + + + + ++ L + +I+ + Sbjct: 620 VRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMA 679 Query: 651 EGVWPKNTAKNPFLSR------------------------VMQSDLNLKTAEKYIGQAAH 686 +GV+P + + F S ++ + + +A Sbjct: 680 QGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEARL 739 Query: 687 DFEMANGTRHLIYTRSLRENNI----------------------------------PTIA 712 + + + + Sbjct: 740 AYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDNVIQAGTP 799 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + ++ GQ D +R A P + Sbjct: 800 WPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQDEVALPPRLTT 859 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S+I +L +P A R L+ + GT FH +++ + + Sbjct: 860 SQIVRLHANPQAF--RDDLRRPMPRPADRG---AGIGTAFHEWVSQRLAPAEPIPLFDAE 914 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--EHEEKIQSSIEKIFVNIPAKMA 890 + + ++EN + L EE + + V M Sbjct: 915 EVAE------LDEENTTQEAVAAEPSGAESRALRSLCQAFEESRWAGATVLAVEKSFVMT 968 Query: 891 IESIGIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS 948 I + G D + G + D+KT + QLS+ A Sbjct: 969 IGQT--VVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP------LQLSIYRLAWAQA- 1019 Query: 949 FSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 ID +V + + I A L+ Sbjct: 1020 -RGIDPSRV-RAVFHHVGANETISAEPLLDADQVAAILT 1056 >gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 1201 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 104/905 (11%), Positives = 228/905 (25%), Gaps = 84/905 (9%) Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWEDLHALK 173 ++ +P K + + ++ L + I+T E+ +WE L L Sbjct: 327 KDGIPPASKGPEAKQWKARLDKLMDSCRRTPGLLAAMQQIQTLPGVHYEDAQWETLRHLF 386 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----KGTKGP 229 A L++ + N + A + + Sbjct: 387 VA-----LRRALAELRVVFAEY-------NQVDFLEISRAALEVLGQSESGMRWSEQLRH 434 Query: 230 IIIAGSTGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I++ + +L+ ++ H +G D ++ + Sbjct: 435 ILVDEFQDTSRQQHQLLESLVEHWMPEDGRTFFLVGDPMQSIYLFRQAEVELFERVREQG 494 Query: 287 TYSTHPQYSLA-----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + +L + L DV + + V ++ Sbjct: 495 LGESLTAETLKLRVNFRSHARLTEPLNDVFEPVFAATAGAAGARVEFEASSAAVEEVATI 554 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--------KSALIT 393 + + +D A EA ++A + + + A++ Sbjct: 555 YEPPLQVHAQLCSTDADAEQKRAL-RLTEAETVAEIIEQHAERIAAARAAGEEYRVAVLV 613 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R+ + L R GI L+ L +L+ A+ D +A +L++ P Sbjct: 614 RNRSHLAWIVPALRRRGIAFRAVEIESLAARQEMLDLMALVRALVHPMDRIAWLSLLRAP 673 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 E + + E + + + +R Sbjct: 674 WCGLSLEELHRLAGGDDAESSRHPMLELMQQNLARLGEEAQARVRRVLAVMERAAAARTR 733 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + V+ + + + + ++ + L V D L Sbjct: 734 PGETASFSAWVERTWHALGGPLCLEGAEREN---------AEVFFSLLDEVSPDGAELLT 784 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILG 632 + ++ + + + E + + +I + + L Sbjct: 785 REFSQKLERLFAQPDPAVSERCGVQIMTMHKAKGLGFDVVIVPGLERGSGREKQPLVTSL 844 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 + D + + ++ + Q E+ A Sbjct: 845 QRPNPETGKDVFFVAPIGAKGSGTKDPLYAWVQKQKQQRYG----EERKRLFYVACTRAR 900 Query: 693 GTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 HLI T + P+ S L G K + + Sbjct: 901 QELHLIGTATYGEKGLRKPSAGSLLATAWPALEGAFEMAMPKAETERTGEVIEFPAARPV 960 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD----RT 806 + + R S L A R L+ + P+ Sbjct: 961 PGVLEEIAAAAASGTRVRRLPLSAEWTLDEGKDARMEARALQSPGRETCFRRPEGSRLAR 1020 Query: 807 DRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 G + H ++ + + +++ + D +E + + ++ Sbjct: 1021 AVGQVLHTMLERMGAEIAAGRWDAAGFEVKVLRLLGDHALIQEQVREAVRE-----VLRM 1075 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG-FADRIDLLK-------SGFVDI 915 EE E L ADR+ G++ I Sbjct: 1076 LEQCAADEEARWILGEHEGGESEPSWTGRGPDGVLRTLRADRVFQAGARPLEASDGYLWI 1135 Query: 916 TDYKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 DYKT E+A+ PQL A L+ + + R L+Y RL+ Sbjct: 1136 VDYKTSTPMGGESAEDFLRRERSVYAPQLQAYAQVLRTARGTNLPVR--LALYYPRLEGG 1193 Query: 969 FKIDC 973 ++D Sbjct: 1194 NRLDW 1198 >gi|313884183|ref|ZP_07817949.1| putative ATP-dependent nuclease subunit B [Eremococcus coleocola ACS-139-V-Col8] gi|312620630|gb|EFR32053.1| putative ATP-dependent nuclease subunit B [Eremococcus coleocola ACS-139-V-Col8] Length = 1196 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 116/947 (12%), Positives = 257/947 (27%), Gaps = 146/947 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDL--HALKNEK--YGMWWLLAADFLKIASKYWTERLVEL 202 L + + DL L ++ L + + E + L Sbjct: 122 GFLDKLLQQFKELYEAQVTATDLLLARLDHDNSLIQNQEEREIQELSDLYQSFLEEISRL 181 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 V YQ + +I+ + L++ A + V L Sbjct: 182 QLDDYVIYQQLEEILTKKGAEGFKDTYLIMDQHYHLNARESHLLAQFARYCQ--KVWLTL 239 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 A+ +S + ++L DI ++ L + Sbjct: 240 PLSHQEALSQQYNPVINLPRASYRSIKDLILSLNIEVLPDWDINETNLDTLPS------- 292 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA-DNEREEAISIAIALRMS 381 I + + T+ + K+ D +A ++ E +++ +R Sbjct: 293 ----IMQVGASFKDIQLMQTNGYQPKLS------QDHHFFQAFASQEAELMAVTNEIRKL 342 Query: 382 LDENK---KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + ++ + + R + + I + ++ SLLN Sbjct: 343 VMKQGYRYSDILVLARNLDKYRTLAPLYFSLNEIPLFFDHAETMAKHSLVDFFESLLNLK 402 Query: 438 FKLNDFMAIATLVKHPLAKFGFP------EKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 + L+K K + N LE + + SY + Sbjct: 403 AYHFKDRDLLYLLKSQYFKLDLTSLGIKTDAEYENGVNQLENILIANGYFSYRMSQESFQ 462 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVL-----LVDHILQCITPLVTYKTNKNSTCG 546 QK E EL LV+ + + +T Sbjct: 463 WHFTNQDQKMVDPYGVATDISLGELAELGRQSINRQLVEPLKRWSQETLTGGDAVTWFYQ 522 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 L I + + ++E + + +E+ +L +L + K + + Sbjct: 523 FLEILKIKESLIELRDE-AIEEGQLAASRHYEQVWDSLMALLEEFYTIFKNKKISFDLFK 581 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 D++ + + + + ++ + LN+ P + FL+R Sbjct: 582 DLLIQGLKKSSFNIIPPTLDQVRFTNIESPQIRQAKICFVLDLNQDQLPLIQVQESFLNR 641 Query: 667 VMQSD----------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRW 715 + L+L + Y + +++ + N S + Sbjct: 642 QQRQAMNDKMLVYQHLSLLEDDAYHREFFLAYQLFFRASDRFYFAYHQDVNEENQTWSPF 701 Query: 716 LQRLLVLG------------------------------------------GTDFFDNLKK 733 + +L+ G +L+ Sbjct: 702 ISQLMKTHQFKEGWPPLDSNSGRALVYSSPAIQKMNFLEGVTRLDTESQQGQAHAQDLRL 761 Query: 734 RGQCYLDWTRK--------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L+W R+ P + + L P S S ++ Sbjct: 762 SLGRLLNWDRQNGLIWGAIKDLVLRAKTNQSLPDQIKAETAVALYGNPLVASVSRLESYF 821 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK------RINKNTPEINH 833 DPY+ + + L+L F DP G +H I+ + + + +P+ Sbjct: 822 QDPYSHFLQYGLRLKERDQFLMDPMVA--GNYYHEILDRTLSQLIEEEIHLKDLSPDQLQ 879 Query: 834 LMKQ---------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ + F+ + + + + ++ + L + + + Sbjct: 880 ILLDHQLQAFNEIEANQIFQASAVNRALQQLMQADISQVLLNHLA--VAHLTGNQPLHTE 937 Query: 885 IPA----KMAIESI--------GIHLTGFADRIDLLKSGF---VDITDYKTG-DNPKKET 928 + + + + I LTG DRID L + + DYK+G K + Sbjct: 938 LIFGPGRRQDFKGLAYPLGHNQEIRLTGKIDRIDTLSRKGQDYLSVIDYKSGNKEFKLQN 997 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 +D Q+ + + + + FY L +KF+ I Sbjct: 998 LYYGLDLQIVTYL----SVALANYPNSQALGAFYQSLGRKFESKKID 1040 >gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] Length = 1180 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 101/929 (10%), Positives = 227/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFFWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRREVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] Length = 1101 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 118/1098 (10%), Positives = 253/1098 (23%), Gaps = 144/1098 (13%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + + D I+ Sbjct: 482 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASVDADNPCLADAIS 541 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L + + LV + S Sbjct: 542 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593 +++ ++ ++ Sbjct: 602 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 662 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 722 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768 S +L L + D +P R Sbjct: 782 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841 Query: 769 -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S ++I A ++ + L RG Sbjct: 842 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900 Query: 812 FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850 H ++ L++ + P+ + + P Sbjct: 901 NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +++ ++ V +P +M I + G D + + Sbjct: 961 GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G + D+KTG P A + QL++ A + V FY ++ Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075 Query: 971 IDCITNDKKKYSADELSE 988 + A L++ Sbjct: 1076 VVPDELPAPGELAMLLTD 1093 >gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2] gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2] Length = 1180 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 101/927 (10%), Positives = 227/927 (24%), Gaps = 99/927 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL--ILIWRNKLPDIIKDLY 131 +L + + + ++ L + + +L L ++ + L Sbjct: 241 LLADLWPVPEFSDDALDLILSIPKGASRAQDFALQLKRLEKVSGLPDRIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTQSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + + +P PR + S LI + Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDVSSPVLEPGTGAPAF-AL 993 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RGT H ++ L K + +I P + H I Sbjct: 994 RRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD------WPDAERLRAWQSVHAILDD 1047 Query: 867 FLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 +F + + I ++G DRI + +S V I DYK Sbjct: 1048 ---------PRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDYK 1097 Query: 920 TGDNPKK--ETAQKLIDPQLSLEAAAL 944 T P K E QL+L L Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELL 1124 >gi|322391964|ref|ZP_08065428.1| exonuclease RexB [Streptococcus peroris ATCC 700780] gi|321145190|gb|EFX40587.1| exonuclease RexB [Streptococcus peroris ATCC 700780] Length = 1091 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 115/927 (12%), Positives = 243/927 (26%), Gaps = 143/927 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + L +I I T + + DL +L + + + Y + S Sbjct: 113 QFIQQLIEIYHEISTAKMSFLDLESLTDADKRSD---LLLIFEKITAYLNQ-----GQVS 164 Query: 207 PVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 L+ A ++ +K ++I G T L+ + G ++ G+ Sbjct: 165 QGSPLSYLIDAIEKNNVSSDFSKIALVIDGFTRFSAEEEHLVDLLHR--KGVEIIIGV-- 220 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + +S+ + Q S+ + L L K + Sbjct: 221 -----------YATKKAYNSSFSEGNLYQASV-EFLRHLSSK-------YQTKAGDACQE 261 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-- 382 +F D E + K D+ + +EE +A ++R L Sbjct: 262 HKNLDAFAKASKLLESAYDYSEISLEVDAKDREDLQIWSCLTHKEELELVARSIRQKLHQ 321 Query: 383 --DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + + K ++ D + ++ I + ++ + + S+ Sbjct: 322 ESELSYKNFRILLGDVESYKLSLQTIFNQYQIPFYLGKSESMAHHPLTQFVESIGRLKRY 381 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + L++ L + + K + Sbjct: 382 YFRQEDLINLLRTGL-------YTDLSQEEIDSFEQYLRYLGIDGLSSFKQEFTKNHREK 434 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + R+ + L + + + + T ++S+ ++ Sbjct: 435 FDLVKLNELRVRVLSPLETLLSSRKQNAENILAKWNNFLKDSFVTKKLQNLSETMEVADQ 494 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 Q EE K + + + +++ ++ + + Sbjct: 495 ERQ---------------EEVWKAFCHVMEQFATVFEGTQVALDDFLALLHSGMSLSNYR 539 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 T+ + L D + GL + PK LS + LN T + Sbjct: 540 TIPATVDTVLVQSYDLIAPLTSDLIYAIGLTQEHLPKIAQNTSLLSDEEREVLNQTTQDG 599 Query: 680 YIGQAAHD-------FEMAN----GTRHLIYTRSLRENNIPTIASRWLQRLLVLG----- 723 A + M + + L+ + N + S +L+ L G Sbjct: 600 SQLLIASHENLKKNRYTMLSLVNSAKKQLVLSAPSLLNENESKESVYLKELQDFGFTKIE 659 Query: 724 -----------------------------GTDFFDNLKKRGQCYLDWT--RKLDYTTKQP 752 G L RKL+ Sbjct: 660 KRINRKNLSKDDIGSYHSLLSSLVAYHQQGESETSEQDLTFIKVLARVMGRKLEDQGLDN 719 Query: 753 HYKRPKPF-----------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 P + Q S S + + + Y+ + R +L L + Sbjct: 720 PVLPTSPKSKTLATETLEVLYPKNQDFYLSTSGLTEFYRNEYSYFLRYVLGLQ--EELRL 777 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII--DSHFEKENLPPHIDIIWRHL 859 PD G H I +K + + + F+ + + Sbjct: 778 RPDARSHGNFLHRIFERAMKLPADTSFDRRLEQAISETSQEREFQAIYQESLEAQFTKEV 837 Query: 860 FHKISHS---FLEHEEKIQSSIEKIFV---NIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 ++ + L H +I++ E+ +++ G DRID LKS Sbjct: 838 LLDVARATGHILRHNSEIETIQEEAVFGGKEQAFVQLDNGRNVYVRGKVDRIDRLKSSEA 897 Query: 914 D-ITDYKTGDNPKKET-----AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 + DYK+ ++ QL AALK S Y+ + + Sbjct: 898 IGVVDYKS----SVTQFNFPLFYNGLNSQLPTYLAALKKEGNSDF-----FGAMYLEMAE 948 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNL 994 + K A+ + L Sbjct: 949 PVQSLQKFKTLSKALAETSKSMKYQGL 975 >gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] Length = 1156 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 101/917 (11%), Positives = 222/917 (24%), Gaps = 93/917 (10%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 I +L + L + + R AR I P Sbjct: 244 EIAALPEAAMHNAAEVLASGTKTDVKCAEALRAFLGARASRAENLDTYLGIFLTKEMKPR 303 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + ++ A A +++ E + L A+ + + + Sbjct: 304 ARLVTAALAKKHPDVEQELLAEQERIIRLHARLRAIGVAEATE---AIVTLAVEILETFD 360 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLMST 248 + M I+I + + P +++ Sbjct: 361 KAKHARALLDYDDLISKTRDLLTMRAMAPWVLYKLDGGIDHILIDEAQDTSPEQWDIIAR 420 Query: 249 VAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLA 297 +A+ + D + + + ++ Sbjct: 421 LADEFLSGSGARGVVRTIFAVGDEKQSIFSFQGADPARFDDMKIYFERRVKASEQRWDYV 480 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD----------MRNTDILEN 347 L E + + V + RS + + L + + E Sbjct: 481 PLTRSFRSVPEVLAAVDKVFESLKARSGLTASGNLDIHIAHRELDAGLVEIWELEEPDEG 540 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD------------ENKKKSALITAD 395 + + D + EA + A IA +R LD L+ Sbjct: 541 QEASPWDAPLDY-MTEAAPMAKLAARIAATIRNWLDSKEVLISKGRPIRAGDILILVRRR 599 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + L G+ + + + L+ L L +L + D + +AT++K P A Sbjct: 600 NAFVGEMVRHLKELGVPVAGADRMVLTEQLAVMDLLALARFVLLPEDDLTLATVLKSPFA 659 Query: 456 KFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 F E + +L+ + L R+ + + + + + Sbjct: 660 GFTEEEVFDLAWNRKGTLWQSLKEKATRNPRYAEAAAFLLRLLERADYEPPYEFFAHVLG 719 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + LL + P+ + + + + V L+ Sbjct: 720 GEGGRTRLLARLGPEAADPIDEFLSLALEFERKHPPA--LEAFVHWLERGSS-------- 769 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + + + + + ++ + P L L L Sbjct: 770 --------EIKRDMDQGRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGGSHDPALLSLPAL 821 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 E + +E L + + Sbjct: 822 EQDGPKLLLWPVRKKDEDEVSAGARA-------------LHREIQAAEYRRLLYVALTRA 868 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH- 753 R +Y R P+ + L L + + + Sbjct: 869 RDRLYISGYRNATPPSSECWYEMVCETLKPAAREIVLPDGRMVWRIEGEQRRQVDSKAPS 928 Query: 754 -YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTL 811 + P P + + + L P + + + + D RG+L Sbjct: 929 AAEEPSAPPEWAHRDAPLEPTPSRPLA--PSRLPPEDLEEPSVLSPLAGDNTNRFRRGSL 986 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H ++ L + + Q + I +F + + + H Sbjct: 987 IHRLLESLPDMEPAERRAAARRFLAQPAH-----GIDEAAQNEIEAAVFRVLDDATIAHV 1041 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETA 929 + V + + + + + G DR+ + + V I DYKT P E Sbjct: 1042 ---FGKGSRAEVPVAGTIELGGRPLLIAGQIDRLCVTED-SVTIIDYKTNRPPPQTLEAV 1097 Query: 930 QKLIDPQLSLEAAALKA 946 Q++ A L A Sbjct: 1098 VPAYIGQMAAYRALLAA 1114 >gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv] gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551] gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97] gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987] gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054] gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054] gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506] gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475] gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis H37Rv] gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551] gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97] gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054] gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A] gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] Length = 1101 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 118/1098 (10%), Positives = 252/1098 (22%), Gaps = 144/1098 (13%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + D I+ Sbjct: 482 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L + + LV + S Sbjct: 542 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593 +++ ++ ++ Sbjct: 602 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 662 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 722 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768 S +L L + D +P R Sbjct: 782 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841 Query: 769 -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S ++I A ++ + L RG Sbjct: 842 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900 Query: 812 FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850 H ++ L++ + P+ + + P Sbjct: 901 NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +++ ++ V +P +M I + G D + + Sbjct: 961 GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G + D+KTG P A + QL++ A + V FY ++ Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075 Query: 971 IDCITNDKKKYSADELSE 988 + A L++ Sbjct: 1076 VVPDELPAPGELAMLLTD 1093 >gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210] gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148] Length = 1101 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 118/1098 (10%), Positives = 253/1098 (23%), Gaps = 144/1098 (13%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEA-----EHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A ++ +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGRDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + D I+ Sbjct: 482 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L + + LV + S Sbjct: 542 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593 +++ ++ ++ Sbjct: 602 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 661 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 662 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 722 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768 S +L L + D +P R Sbjct: 782 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841 Query: 769 -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S ++I A ++ + L RG Sbjct: 842 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900 Query: 812 FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850 H ++ L++ + P+ + + P Sbjct: 901 NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +++ ++ V +P +M I + G D + + Sbjct: 961 GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G + D+KTG P A + QL++ A + V FY ++ Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075 Query: 971 IDCITNDKKKYSADELSE 988 + A L++ Sbjct: 1076 VVPDELPAPGELAMLLTD 1093 >gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1191 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 95/808 (11%), Positives = 212/808 (26%), Gaps = 74/808 (9%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-GTKGPIIIAG 234 + F + W E+ N S ++ I++ Sbjct: 356 EDRPLRETLLKFASMLWALWEEQKKRKNILSFDDLLTKAKDMVNKYPKAVERYKYILVDE 415 Query: 235 STGSIPATARLMSTVANHPNGAI-VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 L+ +A GA + D + + Sbjct: 416 FQDINGVQNLLIKNIAAGKEGATKLFIVGDLKQSIYRFRHADLRIFADYIEKAKSGAG-- 473 Query: 294 YSLAKLLDFLDIKREDVKRLGNV------SNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 L + + R+ ++R+ ++ + P + ++ L+ Sbjct: 474 -KYVALKESFRMTRDLLERINDLFEYIWKDGISSSLKEIYEPLVYPETLKNENSSGDLKI 532 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLE 405 + + A + A +A RM + K ++ RN ++ Sbjct: 533 LLETNAEDEDGNKASSAQRKNSLATKLAHRFRMFHEGGVFWKDMVVLVPTRNYFDTLEEA 592 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 R I + + T+LL A+ D A+ ++ P + + Sbjct: 593 FEREEIPAVFVDQRSFFSRSETLDATALLTALNNPEDDFALIGMLSSPFLRLSQERVSKA 652 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + E R + + + ++ + + + L EE L L + Sbjct: 653 LSSIEGEGGEGRIWRYLKTNLKGTAEKIEYLRRRAILRGPSDVLNYLLEEPLWLLALPSN 712 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 ++ + + + K + P G+ Sbjct: 713 KRMRAFSNIRYLIHFLRGYED-----AFGKDLAGAADYLKKTARLNAPYEEATPLGEDED 767 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + ++ + + L + ++F+ S FD Sbjct: 768 VVRIMTVHAAKGLEFPVV----AVFGLEYARHPRSGSSLVPSIFVGTVASSYGDPFD--- 820 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 + P A + LK E+ + + + + E Sbjct: 821 ----RKKNPPSKAAHDYLE--------GLKQEEENL---RLFYVACTRAKKHLILCGNYE 865 Query: 706 NNIPTIASR----WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK--- 758 + S+ WL+ +L G + + + + + D +K+ + Sbjct: 866 IDSQGNPSKKTGLWLKTVLNWEGARRYADPDDIDEAEIITPKTSDAGSKKNKLSHSRGIS 925 Query: 759 ----PFPPLEAQPRTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 P ++ +S +E + P Y + R+ L L + ++ D G+L Sbjct: 926 LKKLIRPIADSPLDKFSATEYALISWCPHAYRMSCRQGLPLKWELPRSEEYGGPDVGSLV 985 Query: 813 HNIITEL---------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 H I++ ++N ++ + + ++ P + Sbjct: 986 HWILSRWDLKEESLVRFFPENDENLERTLRMLPTGLRPILKDKSHWPLLQRWLTAFAGSF 1045 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 S L + K + IP +ES L G D + L I DYK Sbjct: 1046 LGSTLRRILSSKDPEYKTYREIPFDFELESGT-RLAGQIDLL-YLDDATAHIWDYKI--- 1100 Query: 924 PKKETAQKL-----IDPQLSLEAAALKA 946 E + QL A+ Sbjct: 1101 --TEDLDEGSFMELYRKQLEFYGYAVNR 1126 >gi|312140617|ref|YP_004007953.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311889956|emb|CBH49273.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 1116 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 114/1107 (10%), Positives = 272/1107 (24%), Gaps = 161/1107 (14%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD 83 + +V ++P V T++A Q+L + + S ++ + G Sbjct: 44 MAARVVWLVANGLVDPE---QVLGLTFTRKAAQQLTARIRKRLAKLAGSALVRDLDPSGS 100 Query: 84 VVEEKFTADL------------LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + ++ L + L P+ LL L + + DL Sbjct: 101 LRSRILASEPEVSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLD 160 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL------AA 185 + + + + L+ LA+ + + +L L + Sbjct: 161 TDRNPASITE--SVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLL 218 Query: 186 DFLKI---------ASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPII 231 D L++ + + L A R E + ++ Sbjct: 219 DLLEVQHQRLDLLPLVQRLADTLRREGALDFGSQMSLAARVASEHPEVGRSERARFRVVL 278 Query: 232 IAGSTGSIPATARLMSTVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + + A L+S++ G + D W + + +++ + Sbjct: 279 LDEYQDTGHAQRVLLSSLFGGGEDAGLALTAVGDPMQSIYGWRGASAANLPRFATDFPLA 338 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 +LL E ++ +S + R + +SK Sbjct: 339 DGTPAPKLELLTSWRNPPEALELANMISEPLRDRGVEVSKLR------------------ 380 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------SALITADRNLARRVK 403 DV L D E +A + + + +A++ A + Sbjct: 381 ARPAAVPGDVRLALLDTVETERAWVADRIAEQYEAARVDGAKPPTAAVLVRRNADAAPIA 440 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 EL G+ +++ L T + + ++L + A ++ A++ Sbjct: 441 EELRARGLAVEVVGLGGLLHTPEVADVVAMLRLVADPMAGTAAVRVLTG--ARWQIGAAD 498 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + +R + + + + + D + + + D A Sbjct: 499 IRALWKRAGELGIRSDHGATGAVTDAAALDDALGSALPGEQSEQAGLADALADPGPAHRY 558 Query: 524 VDHILQCITPLVTYKTNKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + I + + G + + + + E Sbjct: 559 SEAGYVRICAVAAELASLRERLGQPLTELVAEVERVIGIGIEAQARTRQSEVGGAGREHL 618 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + S S + ++ + +G + +L ++ L + Sbjct: 619 DAFADVVSGYANRTSATLTGLLSFLAAAEHVENGLAPGEVEVAPDRVQVLTVHSAKGLEW 678 Query: 642 DTLILGGLNEGVWPKNTAKNPFLS------------------------------------ 665 + + + L GV+P + A +L Sbjct: 679 EVVAVPHLTAGVFPSSQASATWLGSVAELPPTLRGDRAYPGESADGVPVLDLENLYHRKD 738 Query: 666 -RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENNIPTIASRWLQRLL 720 + + + + F +A P S +L L Sbjct: 739 LEDAIKSHKDALSTRRLDEDRRLFYVALTRTERALFVSGHHWAESGADPKGPSPFLLELE 798 Query: 721 V---------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 LG D + G + R + A+ + Sbjct: 799 ELVSTWEGERLGAIDVWAPAPDDGAENPLTATPRSALWPRDPLGRRRADVERGAELVRGA 858 Query: 772 FSEIKQLIN-------DPYAVYARRILKLDFIPHFKKD-------------------PDR 805 + + + DP A L D Sbjct: 859 LAGLGKAAPEPEAVDGDPDNWAADVDALLAERRERGHGGTDVEMPAQLSVSQLVDLAADP 918 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 + + T + ++ + + P +++ Sbjct: 919 DALAARLRRPLPFPPNPLARRGTAFHAWVEQRFGATRLLDFDELPGAADTGVGTETELAL 978 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 + + V +P + ++ L G D + G + D+KTG P Sbjct: 979 LQDAFLRSPWADRSPVEVEVPFETSVAGT--VLRGRIDAVFADADGGWTVIDWKTGAEPS 1036 Query: 926 KETAQKLIDPQLSLEA-----AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 ++ + QL+ S + L + + Sbjct: 1037 AAN-ERAVVMQLAAYRIAWAELMAARQSRLTGRPVEP------PLDKVRAAFHYVRTGRT 1089 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQP 1007 + ++L + L ++T E P Sbjct: 1090 IAPEDLPDA--DRLARLITTAGAEETP 1114 >gi|317012198|gb|ADU82806.1| hypothetical protein HPLT_01840 [Helicobacter pylori Lithuania75] Length = 785 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 135/404 (33%), Gaps = 57/404 (14%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 NLHTEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + + P + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKITILDLEKSFETIIQ--GVVF 648 Query: 899 TGFADRIDLLKSGFVDITDYK------------T---GDNP------KKETAQKLIDPQL 937 G DRID + + DYK T G +P + Q D Q+ Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKSDLKLDNMSKTQREGLSPIEIAQISTDYQQISTDYQM 708 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 ++ A ALK + + F+ L++ ++ + Sbjct: 709 AIYAFALKNLGYK-----EPIKAFFYDLRKGELLEEDELTLQAK 747 >gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33] gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] Length = 1180 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 102/929 (10%), Positives = 228/929 (24%), Gaps = 101/929 (10%) Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLY 131 +L + + + ++ L + + + LE A + L Sbjct: 241 LLADLWPVLEFSDDALDLILSIPKGASRAQDFALQLKRLEKASGLPDKIAVLRAAFLKST 300 Query: 132 PESPLSLPISPANAIWLAKNLADIID-IIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 E + A L + D E + L L + L A + Sbjct: 301 GEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKEL---RLVRLNLAALTLIDN 357 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPIIIAGSTGSIPAT 242 + + + + A ++ + I++ + + P Sbjct: 358 LLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQ 417 Query: 243 ARLMS--------------------TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 +++ V + G I+ +++N Sbjct: 418 WQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFAEQGRAISIQASNAE 477 Query: 283 SSNTTYSTHPQYS----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 S + + + + +D + + E + L + R + + + Sbjct: 478 LKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSGATVHSAIRDKEPGEIEIWDMLTP 537 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------------NK 386 + + ++P Q V L A IA +R LD + Sbjct: 538 EMVEEPDDWRVPVDQLAAPAVRL---------AEQIAATIRYWLDRGEPIPGQNRKIAPR 588 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + L + + + + L++ + L +L + + +D +++ Sbjct: 589 DIMVLVRKRDQFMPALSRALKNLSVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSL 648 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A L+K PL + + + + + ++ +N Sbjct: 649 AALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYRASRHDAELAQIHKLLSRWRNMADTM 708 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + A +L + P ++ + L+ + Sbjct: 709 PVFEFYARVL--SADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEA 766 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 L + + ++ + G+ + L+D + ++ Sbjct: 767 AAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVF------------LVDPGSAVWTGSRAP 814 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L + +R + L + Sbjct: 815 KLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRL 874 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 GTR T + S + + + + + Sbjct: 875 IICGYRGTRESGETWHRLVEDALAAKSETFVHPVTGVAARRYRKTPRSFIEINEEDQAGA 934 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-R 805 + + +P PR + S LI L + P Sbjct: 935 TSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLD--LSSPVLQPGTGAPAFA 992 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT H ++ L K + +I ++ Sbjct: 993 LRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAAD---------------WPDAERLKA 1037 Query: 866 SFLEHEEKIQSSIEKIFVN-------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 H +F + + I ++G DRI + +S V I DY Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES-RVLIVDY 1096 Query: 919 KTGDNPKK--ETAQKLIDPQLSLEAAALK 945 KT P K E QL+L L+ Sbjct: 1097 KTNRPPPKTLEAVPSAYRAQLALYRELLR 1125 >gi|222110699|ref|YP_002552963.1| exonuclease-like protein [Acidovorax ebreus TPSY] gi|221730143|gb|ACM32963.1| exonuclease-like protein [Acidovorax ebreus TPSY] Length = 856 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 104/772 (13%), Positives = 206/772 (26%), Gaps = 77/772 (9%) Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L+ A A + + + + + + L Sbjct: 117 PLLEMAAQLAVVAAAVAPGRRPDWGEAARALLPAAGDGGALRLEAAAARIALEWVLASRH 176 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALI 362 + + ++ + + + V L Sbjct: 177 VGDVLFESGVRAAVPLLVVVQGFQPDPLARTLAQHWAEAGLVVDLPQVMDGGKAGVPTLH 236 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 + +EA A + L + + AL+ DR L RR+ L G+ + G LS Sbjct: 237 AVPDAEDEAQRAAACVLQHLAQGQAPVALVANDRALTRRISALLAGAGVAVHDENGWLLS 296 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 TT ++ L ++L A A+ +K A ALE R Sbjct: 297 TTHAAARLMAVLQAGAWDATADAVLDWLK-------QSPAVDGAALRALEHWLRRAGARH 349 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + L + R + + + + + Sbjct: 350 WSGAVTQLQALAERRPAEAALADQVQAWRAQLRAARPLAQWLQSLRVLLQDCGLWDGLQQ 409 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 G +++ LQ+ D G+ + Sbjct: 410 DEAGARVLAEL--RLPEGLQDDLQDMD-------------------------GAGARMAL 442 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 ++ + +++ +P + + +L + F L+L G +E Sbjct: 443 ADFTRWVGEVLECARYRPAYVDDAPVVVLPLPQLLARPFAALVLPGCDEKRLQAAPEPPG 502 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLV 721 ++ + L L T + + A + + R E P + S +Q L + Sbjct: 503 PWTQAQREGLGLPTRDLLAAAQRAAWRQALRIARVDLLWRVGDEGGEPLLPSPLVQALRL 562 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G + + + + RP P + + S S L + Sbjct: 563 DGTGTDGADPR------------VTRSVPVAPTARPLPVGA-QLPVQRLSSSAYSDLRHC 609 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------L 834 PY +A R L+L D+ D GT H ++ + + T + Sbjct: 610 PYRFFALRQLQLQEDDELDAGLDKRDFGTWLHAVLQHFHEALQDAPTGDAAARTALMDEA 669 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 + +E W L +HE + + Sbjct: 670 AARATRELGLQEGDFLPYASGWPALRAGYLEWLGKHEAAGACFRQ-----AELRARQPLG 724 Query: 895 GIHLTGFADRID-LLKSGF----VDITDYKT-GDNPKKETAQKL-IDPQLSLEAAALKAG 947 + L G DR+D + G + DYKT D + + D QL+ AA L+ Sbjct: 725 ALELVGTLDRVDAVRPQGGGEPLTLVIDYKTESDALTRGRIKAGAEDTQLAFYAALLQD- 783 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 Y+ + ++ + D + D L ++ I Sbjct: 784 --------DTLRAAYVNVGERGETRLHEQDDVVHLRDLLLGGITHDMQRIAA 827 >gi|317180744|dbj|BAJ58530.1| hypothetical protein HPF32_0948 [Helicobacter pylori F32] Length = 777 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 64/398 (16%), Positives = 137/398 (34%), Gaps = 50/398 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ ++ + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 NLHIEPIKDAYTLFEQTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E+ + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTVGSLLHELLKEVYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + + N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFKAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 K + F+ L++ ++ + K Sbjct: 709 KNLGYKGS-----IKAFFYDLRKGKLLEEEPVLQAKMD 741 >gi|86160293|ref|YP_467078.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C] gi|85776804|gb|ABC83641.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C] Length = 1151 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 150/1096 (13%), Positives = 303/1096 (27%), Gaps = 156/1096 (14%) Query: 12 APSSPFFREMIPALLNGTLVENFR------YDPLNPLLLASVTIYVPTKRAIQELRSEFI 65 A SP R ++ A +N T+++ P L + T+ VP++R LR E Sbjct: 30 ACRSPAVRSVLEARVNVTVIDTLGDWADAVAALPAPGPLPARTVLVPSERHAHALRRELA 89 Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 TG+ + + G TA + + P + + L ARL+ ++ LP Sbjct: 90 R-TGRDAALA------GTRFLGPLTAAIEVLQAAGVPFTPGEGALRPARLLALFHEDLPL 142 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--LKNEKYGMWWLL 183 DL + A I +E DL A W Sbjct: 143 EHFDLDL---------LRTTRGWDEAFAGAIGDLEAAGLAPRDLPAEPAAARDLARLWSR 193 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 E + SS ++ A + GP + S + A Sbjct: 194 V------------EDGAGTSFSSARIFREAAALLARDAGAWPFHGPTLALASGHADAVEA 241 Query: 244 RLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 R + + + P G L ++ + + + + + + Sbjct: 242 RFLRAIPGVRLAVQTDRPAGERHLERVERLFGAEARSALAARGSTGSPRAEEDRDRAVRT 301 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 A+ S + ++L D + + + + P+ Sbjct: 302 PAR-----GSTGSPRAGGPGSSPAGRVTERDLLATYLLADAAVLADPARPRSGGPDGTVD 356 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI---- 411 + A +EA+ E A+ +A + + ++ + L+ LA V L R Sbjct: 357 LEEHAGVEAELEAT-ALWVARQVLEARRPLEEIAVLVPDQDPLAGLVADRLARLPFDGGP 415 Query: 412 -NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + ++ G+P +T + + +++ A+ +A ++ L G + + + Sbjct: 416 LPVFVAGGLPAISTAAGARILAVVRALRSHLSAETLAPVL-PALRLEGVVDGDRTHLTHG 474 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + G + L D + A + + Sbjct: 475 EAMELAFGLGIVGGNPAHPAGALAWSGRAAARAGELEAALAQVHADDDSAERERWRLERT 534 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + L + ++ G + R L Sbjct: 535 LGSLRAIRPALDALVGVARAVVEGAPLAAIGDVLGGFLTRCLLAPGEGAALPARLVEALA 594 Query: 591 IIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 GS + + + ++ + G V +++ + ++F + + GL Sbjct: 595 PACAGSLGKALSGDDALQVVEDQLLGLRVAQGRFGEPAVYVGTVAGAAGVSFGAVRIVGL 654 Query: 650 NEGVWPKNTA-----------------KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 EGV P + L R A + A D +A Sbjct: 655 CEGVLPSQPREDPVVPGALREQLERGAPDRVLRRAEDRVAAQAHALVAAVRGARD-AVAL 713 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW----------- 741 + R+ RE I + + + D Sbjct: 714 SAPRVDLARTEREPGAIFIDAAAALARPHAATGAPAEAVPDGAALRRDAFRPAASAAARF 773 Query: 742 --------TRKLDYTTKQPHYKRPK----------------------------------- 758 LD + P+ Sbjct: 774 RDAHPISDASWLDRVARTAPALPPEWTGTPVVDLARLAALRAPSGPLGPSDGIFDRGGPF 833 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNII 816 P P A R S S + QL+ P RRIL D ++ D G+L H ++ Sbjct: 834 PPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPASAPSLRELDPLSFGSLLHRVV 893 Query: 817 TELIKKR----------INKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISH 865 ++ + + + + D + L + + R H Sbjct: 894 ELFYREHGAAFSRREGRLARWLELARGVADRAFDGLLSEYPLVGEGVRLKERERLHDALR 953 Query: 866 SFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 FL ++ K + V +P + + +H+ G+ DR+D + G + D Sbjct: 954 EFLAYDWK-GGPRRFVGVELPFGTPEAPLSVEADGETLHVHGYIDRVD-AEDGVTLVRDL 1011 Query: 919 KTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 K+G + ++ D QL L A + + KV Y + +++ Sbjct: 1012 KSGKAHPRAGSEAGPTALRDVQLGLYQLAARKLARRWGTPAKVHGA-YAYASGRGEVEER 1070 Query: 975 TNDKKKYSADELSEKS 990 + ++ + + Sbjct: 1071 AFRADAGALEQATAEW 1086 >gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] Length = 1101 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 119/1098 (10%), Positives = 255/1098 (23%), Gaps = 144/1098 (13%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + D I+ Sbjct: 482 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 541 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT----------NKNSTCGN 547 + L + + LV G Sbjct: 542 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 601 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPN------LWFEEEGKTLSSLF--------SKIIE 593 + + + + L + + + + ++ Sbjct: 602 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQ 661 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 662 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 721 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 722 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 781 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR-- 768 S +L L + D +P R Sbjct: 782 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 841 Query: 769 -----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 S ++I A ++ + L RG Sbjct: 842 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLA-ERAHAARGAPARGLP 900 Query: 812 FHNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPP 850 H ++ L++ + P+ + + P Sbjct: 901 NHLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 960 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +++ ++ V +P +M I + G D + + Sbjct: 961 GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPD 1018 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 G + D+KTG P A + QL++ A + V FY ++ Sbjct: 1019 GGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGIT 1075 Query: 971 IDCITNDKKKYSADELSE 988 + A L++ Sbjct: 1076 VVPDELPAPGELAMLLTD 1093 >gi|332981096|ref|YP_004462537.1| UvrD/REP helicase [Mahella australiensis 50-1 BON] gi|332698774|gb|AEE95715.1| UvrD/REP helicase [Mahella australiensis 50-1 BON] Length = 993 Score = 138 bits (347), Expect = 6e-30, Method: Composition-based stats. Identities = 127/1034 (12%), Positives = 269/1034 (26%), Gaps = 136/1034 (13%) Query: 42 LLLA---SVTIYVPTKRAIQELRSEFIEIT------GKKSTILPI--------IKSLGDV 84 LA + T+RA E+ + G K + I ++ Sbjct: 42 ERLANIDEIVAITFTERAAAEMSERIRKAADDEMKSGDKDYWSDVKERLTTAYISTIHSF 101 Query: 85 VEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + VS Q + L I + PL + Sbjct: 102 CGRLLREHPVEAGVDPFFDVVSPAQADIWLDEAIAKAVADALEPTGAPDVR-PLIMRYGF 160 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 K L I + + L + + ++ER Sbjct: 161 DKLCVNIKALYKQIRDCGFLIAEAAKNTDMGQPD----AEAVIYILTASEENYSERKRVA 216 Query: 203 NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 N+ Q + + L +++ RL+ ++A G + Sbjct: 217 NSLDYEDMQRKAVELLQMPAMKDLYNHRFKFLMVDEGQDINYIQYRLIMSIAG-NEGCRL 275 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + + + + + + + ++A+ + + V R + Sbjct: 276 FAVGDAKQSIYRFRGSQVELFDKIAEDISANGGRRLTMAENFRSVGGIIDFVNRRFDSLM 335 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + Y K + + + I ER EA+ A Sbjct: 336 DRYEAVKPARKDHGYISVEILPVDVKGSIDSRKQAEADALARRIAHMVERREAVIYDDAS 395 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 A++ R + R+GI +G + ++L +I Sbjct: 396 GTFRAPRYGDIAVLFQKRTHLLPFEDAFERYGIPYQEISGGSFYDCQEIKDMINVLTSIA 455 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 +D +A+ +K A FG ++ L N + + Sbjct: 456 HPSDIIALVGTLK---AFFGVSDEALLVMANCGGIPYV---------------------- 490 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + L D I+ Y ++ISD +L + Sbjct: 491 ------------------LDDTDRLPDAYRMPISRAAGYMAKWRGMADTMNISDIVQLVL 532 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 ++ K + + + I + D Sbjct: 533 DDSGYEKRLASQRGGAHMISNVWK--FCDMATSAAHSGMLIDEFLMRIRAMADTADEGEA 590 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA------------KNPFLSR 666 +++ + + I+ ++ L F ++ ++ N + Sbjct: 591 PLELDGNDAVSIMTVHSAKGLEFPVAVIPDMSSMFRNDNPPMIFDVDKGIAIKPDGDSKG 650 Query: 667 VMQSDLNL-KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 D+ + E+ + + + S + W + L G Sbjct: 651 SKWQDIKDKLSKEQQQEYMRLMYVAFTRAKDRLILSSDDVDTTKQRQPSWWKWLKDSGIL 710 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 +N LD E R + + + P Sbjct: 711 PAQNNPLPETAAALDGAEAPVKHDGIDQTVIIAEGIAPELVYRP--VTPLITYMQCPRQY 768 Query: 786 YARRILKLDFI----------PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 Y +L+LD + G + H+I +L K + Sbjct: 769 YYEYVLQLDSEWFATPDTGVIGGHAEGLSAVQIGDIVHSICEKLKK----------ADEI 818 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 +ID + + + S+ E +++ V +P M ++ Sbjct: 819 DALIDEALNGLDASIQLRE----RIRNMVVSYAESPYFS-GDTDEVKVELPFIMRLD-EN 872 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 I L G DR+ ++K G I D+KTG D E+ PQL+ A A + + Sbjct: 873 IVLVGRIDRM-IIKDGHATIVDFKTGFVDADNIESISMEYMPQLAAYAMAARQ-----VF 926 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISH 1011 V + L+ + E +++ + ++ V ++++ G F Sbjct: 927 GFVVDDAVIYYLEPNIAYKVDIS-------PEAIDEARRRFVDAVKVIESAKGMDDFP-- 977 Query: 1012 LRLSEKSNIQSEYD 1025 S + + Y Sbjct: 978 --PSYRHCGRCGYK 989 >gi|258616340|ref|ZP_05714110.1| exonuclease RexB [Enterococcus faecium DO] Length = 919 Score = 138 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 102/860 (11%), Positives = 226/860 (26%), Gaps = 131/860 (15%) Query: 214 LMRAEAEHLMKGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 + A ++ + I++G + +L+ + + L LD + Sbjct: 1 ALSILANYMQTQDFNNVKFIVSGFSRINGQEYQLLQAMMEKGQLVVDLL-LDRPYTADLP 59 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 +T + + + + L+D E + + Sbjct: 60 EVLTLFHETGKLYFRLFQSARERKVPILVDRF--APEQTRP-----------------TE 100 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKK 388 L + T + + + L EA+N EE +A+ +R + + + Sbjct: 101 LQLLQTMWEETSSQKKAAVHKLGGQEHLHLWEAENPTEEVRQLAVEIRRLVSEENYRYRD 160 Query: 389 SALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 ++T + +L + I I + + SL I Sbjct: 161 IQVLTKNMSLYGNILRPIFQEMAIPFYIDEEQMMENHPLIEWINSLFALDRYSYRLSDIM 220 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALR-------GNKNSYDIMDLKSLVLDRIATQK 500 K L E L K + + +Y + Sbjct: 221 RFFKTELFLSTEAETELDEWKQERDEFRKKLDITENVALAYNYQGTYWTREKDWQFVAYD 280 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI---SDWTKLT 557 L E+ + L + + + KT + + S + Sbjct: 281 FEAEQIEDVQYLEEQSNTIRRLFQKAVPVFLKKIKKSKTGQEAANVFYQFLIQSGVQQQL 340 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + + E+ L L + + + + +IIT ++ + Sbjct: 341 LFWRNQEVDRGNLEAAR-NHEQTWGALIDLLDEYVVIYGESAFDWSLFQEIITSGLENLS 399 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + I R GLN+ V+P LS + LN Sbjct: 400 YGKIPTAIDQVRINRLELVRPNQAAVTFALGLNDQVFPDRKETKGLLSSEEREVLNQALP 459 Query: 678 EKYIGQA-----------AHDFEMANGTRHLIYTRSLR-ENNIPTIASRWLQRLLVLG-- 723 + +GT L + + + + S +L+R+ Sbjct: 460 DGQFLFDPSKESISFEPFQAYLVFLSGTDRLYLSYAQSYDTDGSLKMSPYLRRITEYLSV 519 Query: 724 ----------------------------------GTDFFDNLKKRGQ---------CYLD 740 D + K Q + + Sbjct: 520 PVERKEHLTIESDPNCYVGTYRSGINTVNRIYRLALDEKKPVPKHWQKLKELVLNSSWRN 579 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRT---YSFSEIKQLINDPYAVYARRILKLDFIP 797 + ++ + + + P E S S ++ N Y + + LKL Sbjct: 580 FALQIFESQEHLNVPVSMPEKMAEELYGKEIYTSISRMENFYNCEYKYFMQFGLKLKER- 638 Query: 798 HFKKDPDRTDRGTLFHNIITELIK-------KRINKNTPEINHLMKQIIDSHFEK---EN 847 G +H + K +N + + ++++ F + E Sbjct: 639 -TVYGLTPAATGDFYHESLDRFFKLLFSNQLSLVNMSDTQRRDFTEKVLQEVFGELRFEI 697 Query: 848 LPPHIDIIW-RHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAK----------MAIE-- 892 L + + R+ + ++ ++ + + + I + + Sbjct: 698 LDSSARMNYIRYQLGQTIQKVAWALQKQSKNTGMHPLQTEILFGQIAGAKGITGLELPLS 757 Query: 893 -SIGIHLTGFADRIDLLKSGF---VDITDYK-TGDNPKKETAQKLIDPQLSLEA--AALK 945 +H+ G DRID+ + + DYK +G + A + QL A + Sbjct: 758 NGGKLHVRGKIDRIDVASEQEDTWLSVVDYKSSGRSFDVTEAYYGMAMQLLTYLDVALMD 817 Query: 946 AGSFSQIDCRKVANLFYIRL 965 A + K A +Y+ + Sbjct: 818 AVRLTGKAAVKPAGSYYLHV 837 >gi|210134553|ref|YP_002300992.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12] gi|210132521|gb|ACJ07512.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12] Length = 778 Score = 138 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 135/389 (34%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEIALSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 NLHIEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + + P + + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHL 898 + ++N+ P + + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRKNITPKERLDTLIVLKKI-QAFYLKEKERFNTKIKILDLEKSFETIIQ--GVVF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSKTQRGSLNPIEIAQISTDHQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + F+ L++ ++ Sbjct: 709 KNLGYKD-----PIKAFFYDLRKGELVEE 732 >gi|227486419|ref|ZP_03916735.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235600|gb|EEI85615.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 1115 Score = 138 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 109/970 (11%), Positives = 256/970 (26%), Gaps = 142/970 (14%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALK 173 + L + L L + I ++ +I + ++ Sbjct: 81 EFLNKEGKVLLLTNILQDLKDDLKLFENSYQNIDFINSIVGLISNFKDNNFDEGFFASIF 140 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 N + + +K+ + + L ++ + A + I I Sbjct: 141 NSDISEISKIKFEEIKLILDTYQKELE--GKYFDKEDILSFVAANLDKTDLLDGYEIFID 198 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 L+S + N + +D + Sbjct: 199 KFDFFEERKLDLISALYNKGLNLNISLNIDPKF------------ISNPLVRPEIFDGSA 246 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + + + ++ + + R + + + Sbjct: 247 RTFDLFRQDFESEVINLPSNPKTVDLDHLRINFETY------------------RPAPFE 288 Query: 354 KCFSDVALIEADNEREE----AISIAIALRMSLDENKKKSALITADRNLAR-RVKLELTR 408 K ++ + E+ + + E A+ I ++ + D K A+ D + + +R Sbjct: 289 KNPENIKIYESISTKSEVTNMALLINKIIKTNPDIRYKDMAVYLTDPDQYENELIKTFSR 348 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--- 465 + I I + ++ +LL + ++ L + Sbjct: 349 YEIPIFLDKRRKMADNHIIKTFLALLRLKVNNFRQEDLFYILNSKLIGISDKDANALINF 408 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 ++ +K D L N + E+ + L+ Sbjct: 409 LTYRKIKGSMFENDKYFAMDEDFYEKNLV-------NDPKKDEKIAKKREEYDHVNLVRA 461 Query: 526 HILQCITPLV----TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 IL L T K ++ SD K + + E+ Sbjct: 462 KILHLTKGLDKKNMTVKDLATKIFKMIADSDIKKSINAFQAKLLENADLD-DYKENEQIW 520 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 ++ +++ + I+ + + L + R+ N Sbjct: 521 DEFVAILDQLVLLMGDRSLPLSRVVTIVEAVTRDIQIGLIPPSKDHLIVTDFARDRVSNK 580 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAHDFEMANGT 694 IL G+++ +P AK+ +S +L L ++ + +++ + + Sbjct: 581 KINILLGMDDAYFPSQKAKDYLISPDEMEELEKAKIDLKLYAKDRDRAELLSLYKIISRS 640 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLV----------LGGTDFFDNLKKRG--------- 735 LI++ +L + + + R + L D + R Sbjct: 641 DKLIFSYALSDKEGKDLNESLVIRDIRKIFPKLKKNILLDPRAEDAIFARESLKKYTLAV 700 Query: 736 ---------------QCYLDWTRKLDYTTKQPH------------------YKRPKPFPP 762 Q + L ++ Sbjct: 701 LNKLANKEKITDKDKQIATAFMEYLRENQEKDENKLTYDKVKKGLFYTNDKLALADELRK 760 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + + YS SEI+ PY + L + D D D G + H +L + Sbjct: 761 VLYKKHAYSVSEIETYSACPYKHFIAY--GLRPDVEKEFDVDALDIGNIVHKSFEDLSRL 818 Query: 823 RINKNTPEIN-HLMKQIIDSHFEKENLP------------PHIDIIWRHLFHKISHSFLE 869 + + E++ + +++D F + +I + + ++ Sbjct: 819 IKDMDLDEVDFSEIDKLLDEKFNEGIDENLDSTRKDSPKNKYILKNINQAAKRNTRQIVD 878 Query: 870 HEEKIQSSIEKIFVNIPAK-------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG- 921 + + + + + ++ L G DRID + V + DYKTG Sbjct: 879 QLK--RGDFKLEYFEQAFDKGGFFDPVYVDEENY-LRGRIDRID-MAGNLVRVIDYKTGS 934 Query: 922 DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 D QL + A+ + FYI LK + + + ++ Sbjct: 935 KAFNLAAILNGKDLQLIIYMIAVS----DDKKNLEPIGAFYISLKDEIENFGDSIADEEK 990 Query: 982 SADELSEKSL 991 + L +K Sbjct: 991 ISASLDKKFA 1000 >gi|317181701|dbj|BAJ59485.1| hypothetical protein HPF57_0411 [Helicobacter pylori F57] Length = 778 Score = 138 bits (346), Expect = 7e-30, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIKTAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIQRFKESPKDE---SNSAVGSLIHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSDLKLDNMSEKQRGSLNPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740 >gi|297157456|gb|ADI07168.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1] Length = 1132 Score = 138 bits (346), Expect = 7e-30, Method: Composition-based stats. Identities = 72/613 (11%), Positives = 146/613 (23%), Gaps = 70/613 (11%) Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D TL+ PL L R AL + D+ Sbjct: 511 LDVETALTLLASPLGGM--DAADLRRLGRALREEERAAGRAVPRPSDV---------LLA 559 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 P A L + + L T + + + W + Sbjct: 560 EALAEPERLVAHDPAYARGAQRLGLLLRKARELLAGGGTAEQALWELWDGTSWPQRLERA 619 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +L ++ + + + +I + I +T+ Sbjct: 620 AHRGGAAGRNADRDLDAVCALFETAARAEERVGGRGALNF----LDEIDAQDIAADTLSR 675 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 ++ + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 676 RLVSPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSP 735 Query: 681 IGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 A L+ T + SR+L L V +R Sbjct: 736 GALLAEERRLFYVAATRAAERLVVTAVKAAADDGDQPSRFLAELGV--EPVDVTQRPRRP 793 Query: 736 QCYLDWTRKLDYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSF 772 +L TT P P Y Sbjct: 794 LSVAALVAELRATTVDPAASEALRDAAARRLARLAALRDDDGQPLVPAAHPYRWWGLYEP 853 Query: 773 SEIKQLINDPYAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITE 818 + + D A L + G + H ++ + Sbjct: 854 THSAVPLRDRDRPVALSGSALDQLVNTCSLQWFLGREVKADTPSTAAQGFGNVVH-VLAD 912 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + + + FL + Sbjct: 913 EVASGRTPADLAVLMERLDSVWDALSFDAPWKSRQEKEHAR--AALERFLRWHVMERGGR 970 Query: 879 EKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ 936 + + +E+ + + G DR++ + G + D+KTG A PQ Sbjct: 971 APVATEHEFDVTLEADAYQVRIRGSMDRVEADEEGRAYVVDFKTGKQAVTRDAVAH-HPQ 1029 Query: 937 LSLEAAALKAGSFSQI---DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL-- 991 L++ A++ G+ + + ++L+Q + K A E Sbjct: 1030 LAVYQLAVREGAVDGLFADGHPEPGGAELVQLRQGAARKEGGDAVPKVQAQEPPRGEWVG 1089 Query: 992 KNLIEIVTLLQNG 1004 + L + + Sbjct: 1090 ELLATAAGRVLDE 1102 Score = 103 bits (257), Expect = 2e-19, Method: Composition-based stats. Identities = 62/660 (9%), Positives = 150/660 (22%), Gaps = 31/660 (4%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTA--DLLLSYNLNPPV 103 + + +++A ELR G P + A D+ + + + Sbjct: 16 RILVLTFSRKAAVELRDRMAARLGG--ARGPQATTFHSFCYALVRAHQDMDIFADPVRLL 73 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ + + L+ + + A + ++ Sbjct: 74 SGPEQDVVVRDLLAGQAELERE---GRAAVRWPDELRACLTTRGFADEVRAVLARSRELG 130 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 L + W AA FL + V A + R++ + Sbjct: 131 LDPRALGDFAARQGRPDWRAAAAFLAEYLDVLDAQGVLDYAELVHRAVLLAERSDTAADL 190 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + + + A RL+ +A G ++ D + Sbjct: 191 AARYDAVFVDEYQDTDVAQLRLLRALAG--GGRTLVAFGDPDQSIYAFRGADVGGILEFP 248 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 + + V+ L + + Sbjct: 249 YSFPRRDG--------------RPAPVQVLTTSRRSGATLLAATRLLTHRMPLTRLPADS 294 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLA 399 + ++ + + V E +IA LR + E ++ + L+ A Sbjct: 295 VRAHRELSAVRGGGRVEAYTYPTAGSELDNIADILRRAHLEDGVPWREMAVLVRAGGRSL 354 Query: 400 RRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V+ LT G+ +++ PL + L + L A A+ Sbjct: 355 PGVRRALTSAGVPVEVDGDDIPLRHEPAVAPLLTALRAAATAALREPAGRGAPE-PAEPA 413 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 P A ++ + + + + + Sbjct: 414 EPAGLAEALGVASPAPGAAEAADAAGAARGPTPGDLGLDAAVADAAPAANPVPVGDSPAP 473 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + L V + + Sbjct: 474 GGAHVAGAADAAGPDAGAGAPPGGRPGAAGGAGGAAALDVETALTLLASPLGGMDAADLR 533 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 G+ L + + + + + + + P + + L ++R Sbjct: 534 RLGRALRE--EERAAGRAVPRPSDVLLAEALAEPERLVAHDPAYARGAQRLGLLLRKARE 591 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L +W + + + A++ + FE A + Sbjct: 592 LLAGGGTAEQALWELWDGTSWPQRLERAAHRGGAAGRNADRDLDAVCALFETAARAEERV 651 >gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp. BNC1] gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp. BNC1] Length = 1177 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 96/875 (10%), Positives = 219/875 (25%), Gaps = 105/875 (12%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + LP + A+ L D + AL Sbjct: 309 ERTFKAALKARLPGIYDRYLAAAEFLRQACDRLALFRMLTATTAALGIAD---------- 358 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGS 238 + + +R A + I+I + + Sbjct: 359 ---ALIARYERLKRARGFLDFNDLIMRTVRLLARQDVGPWVQYKLDRGIDHILIDEAQDT 415 Query: 239 IPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY- 288 P R++ ++A + D + ++ + Sbjct: 416 SPEQWRIVRSLAEEFFAGKGSRDGVERTIFAVGDEKQSIYSFQGAEPEAFAESGFRFQAQ 475 Query: 289 --STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS----FLPPDTSDMRNT 342 + ++ +L + ++ + V + R + S Sbjct: 476 VPAAGGRFERVRLTRSFRSTEDVLRAVDLVFSREEARKGLTRDPEPIEHKAIRDSAPGYV 535 Query: 343 DILENKIPNIQKCFSDVAL---IEADNEREEAISIAIALRMSLD------------ENKK 387 +I P + + D + + A IA + L Sbjct: 536 EIWSPLSPEVVEEPDDWTKAVDHASAPAAKLAEVIAGKVESWLKNGEMIEGQGRRLRPGD 595 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ + L I++ + + L+ + LT+L + + ND +++A Sbjct: 596 IMVLVRKRDRFVHALSRSLKNRRISVAGADRLRLTAHIAVKDLTALGRFLLQPNDDLSLA 655 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++K PL + A + + + +LD + + + Sbjct: 656 AVLKSPLFDLDEDALFRLAWPRAESVSLFQALREKASADGKLQDILDTLRNWQRDAAFRP 715 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + A + L + + ++ + + Sbjct: 716 VFEFYASVLAGTAGREGARSRF-VARLGHEANDVLDEFLSFCLTAERTGLIGLEALLDTL 774 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 E + + + + +A + ++ + P Sbjct: 775 EG----------AAPEIKREMDQSRDEIRIMTVHAAKGLEAPVVFLVDPGSAP------- 817 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + + L+ F L V + L+ + K EK + Sbjct: 818 --VSNSHMPCLMPFRMKELP-----VKGFLWRQGKDLANTVARGFEAKVREKAEEEYRRL 870 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWL---------------QRLLVLGGTDFFDNLK 732 + S W + + ++ Sbjct: 871 LYVGMTRAEDRLIVCGYHGVRGPAPSTWHNLVRQAFADQPGTTELQDPEICAPVLRFSVT 930 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + +R T + +P PP A PR S S LI Y A + + Sbjct: 931 PPVEMPREESRASKVETFDIPAELTRPLPPAPAIPRPLSPSGAAVLIEGGYEAAA--LKR 988 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + +RGT H ++ L + +K + + S +E Sbjct: 989 SPVLDGAADPGFALERGTAVHRLLQALPELAPDKREIAARRYLARAGASWPPREAESVCR 1048 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 ++ + + F + + V++ ++ + ++G DR+ + G Sbjct: 1049 SVLAVLRDEQFAPIF--------APGSRAEVSVMGEILLGGTPQAVSGKVDRLAVTA-GE 1099 Query: 913 VDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945 V + DYKT + QL+L A LK Sbjct: 1100 VLLVDYKTNRPAPEHFAEVPAAYIAQLALYAELLK 1134 >gi|237752642|ref|ZP_04583122.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229376131|gb|EEO26222.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 662 Score = 137 bits (345), Expect = 9e-30, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 103/329 (31%), Gaps = 32/329 (9%) Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + ++G LE+R ++ + +I+ N P + K+ FL+ ++ + L T + Sbjct: 291 DVGGGRIRVMGILETRGVDLEYVIIPEFNASNVPSLSDKDIFLNTKIRESVGLPTRKNRE 350 Query: 682 GQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 H + G + + SR+L + G + +L Sbjct: 351 NLQKHYYAELLGGAKEARILCLNNVVDK---PSRFLLEDSIFGTQTPQKTSPAYSEYFLS 407 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + ++S + ++ + Y R +L L + Sbjct: 408 GKALNYKEQQIIA----------PLNKDSFSATSLECFLTCKRKFYYRYVLGLKAQEQER 457 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 + G+ H + E+ + + + + ++ + L Sbjct: 458 -----VNIGSKIHEALREVYAQAQEFDAEILYKEFCRRLNVSV------SARERFESELA 506 Query: 861 HKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 K + E++ + +E G L G DRID K + + DYK Sbjct: 507 KKYFKRVFDLEKERLKEGWNPVLFESDFSFMLE--GFELKGRIDRIDK-KGNELLVLDYK 563 Query: 920 ---TGDNPKKETAQKLIDPQLSLEAAALK 945 + ++ K D QL + A+K Sbjct: 564 YKRSLKRDSVKSYDKSSDFQLPMYYLAVK 592 >gi|268607992|ref|ZP_06141723.1| ATP-dependent nuclease subunit B [Ruminococcus flavefaciens FD-1] Length = 1112 Score = 137 bits (345), Expect = 9e-30, Method: Composition-based stats. Identities = 96/899 (10%), Positives = 231/899 (25%), Gaps = 140/899 (15%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF----LKIASKYWTERLVEL 202 A+++ +I ++ E L + + F + + + + E Sbjct: 114 GFAEDVLKLIGEMKRAGLTPEALM-----ERSQMFGDRLRFKTSDIAMIYMEYQRLMNEY 168 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + I + AE + + ++ + + + Sbjct: 169 GFKDSIE-NIKVAAEIAELQGYFRGRSVYLDEFESFTADQIAMLRVMISSAENVCIALRT 227 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + + + + + +L + + Sbjct: 228 D-DVTAGRFTLFETVNKTYEDIKSICTE---FRKETVLTECSESYRFISPDIAYLSSHVL 283 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 R+ S P ++ + EA + E ++ +++ + Sbjct: 284 RNKKYS---------------------PEEAPKPDNIKIFEARDMYSEVEYVSASIKRLI 322 Query: 383 ----DENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 D + A+I+ D + R+ I +S P++ T TSL++ + Sbjct: 323 HSRKDLRYRNIAVISNDITAYAGIIKAAFKRYDIPYFLSVEKPVTHTAVMVYFTSLIDLL 382 Query: 438 FKL-NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I ++K L + + + + Sbjct: 383 CSRKFRSELIFRMLKSGLTDVSLTDISALENY--CYKWTVDSEIWESEFTAPDDALDSLE 440 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 A +K + + + + +S + Sbjct: 441 AIRKTVIEPVFALRKKLSKKCTAKKIC-------------------TLIYEHLVSGGIEK 481 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 V + + ++ R + L + I ET + + E ++ +I Sbjct: 482 NVGRMMSGLINSDRAYEAAEIKRLWGCLIDILDSICETLDENEMSFSEAAKLMKSMIGRI 541 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + +RL + + G N+G +P + S + L Sbjct: 542 NYSVPPQTLDAVMTASARTARLNAPKAVFIMGANDGDFPNQVTVHGLFSEPDRQKLAEKD 601 Query: 674 ---LKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDF 727 I + L + L + + T ++ + ++ + GTD Sbjct: 602 LLVSTPLADLIAAERLVVYKSVSAPSEKLFISYPLSDLSGQTKYPAQIIDSIIKMFGTDR 661 Query: 728 FDNLKKRGQCYLDWTRKLD-----------------YTTKQPHYKRPKPFPP-------- 762 L + + L +Q RP Sbjct: 662 IR-LTEDDIPVHYYAATLHSAFYHYMQNRESNTPSAAAVEQLLMSRPDYKRRLIYVLSRS 720 Query: 763 ----------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 P S + +++ + + + L L + D Sbjct: 721 GHEQEYLIESEIMENLKSFSPLRLSSTGLEEYDLCHFKFFCDKCLGLHPREKIE--LDAR 778 Query: 807 DRGTLFHNIITELIKKRINKNT-----PEINHLMKQIIDSH----FEKENLPPHIDIIWR 857 G L H L+ R + ++ + + + + + + Sbjct: 779 IAGELTHECFFGLLSSRSKQEFISMSYEDMREEIGRKAEEYRNNKLAGDFGKDAKFGLIF 838 Query: 858 HLFH-KISHSFLEHEEKI-QSSIEKIFVNIPAK----MAIESIG---IHLTGFADRIDLL 908 ++S F+ ++ + S + + + + + G DR D+ Sbjct: 839 SKLTDRLSEVFIHTQQSLMASDFVPHKFELDLRESHSVVLPFGNGKQLSFGGIVDRADIC 898 Query: 909 K-SGF--VDITDYKTGDNP-KKETAQKLIDPQLSLEAAA-LKAGSFSQIDCRKVANLFY 962 K +G V I DYK+ ET I+ Q+ L A G + + A + Y Sbjct: 899 KINGRDYVRIVDYKSSRKNITAETLGCGINMQMLLYLFASADKGGIYE--GCEPAGVLY 955 >gi|33592639|ref|NP_880283.1| hypothetical protein BP1547 [Bordetella pertussis Tohama I] gi|33572285|emb|CAE41837.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382056|gb|AEE66903.1| hypothetical protein BPTD_1530 [Bordetella pertussis CS] Length = 886 Score = 137 bits (345), Expect = 9e-30, Method: Composition-based stats. Identities = 92/854 (10%), Positives = 223/854 (26%), Gaps = 53/854 (6%) Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + E S + S AT + Sbjct: 45 QLSSERQVSELPRIMPLSAWLADCVAELAFDERYEVPAYRLSSFATQLVWREAIRLEEAD 104 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 L D + + + + + + + Sbjct: 105 RALLDAD-----QAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDA 159 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + G V+ + I L + + ++ Sbjct: 160 EDANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARL----LRALADGGADVVAWRD 215 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 A+R + ++A A+ A R + R + P L A Sbjct: 216 AVREPAWPQRFEAADRGAEWRAAARWAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQA 275 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + + V L ++ L+ E+ A + + L + Sbjct: 276 LAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAACGAGEPALFGAALLAGHCAGD 335 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLL---VDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + + R ++ + + + + W Sbjct: 336 LQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAW 395 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 L + R L ++ ++ G L + + + + ++ Sbjct: 396 APRFKAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAA 455 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + +P+ + S+ L +LG LE+ +D + + GL + V P + NP L + + Sbjct: 456 RAGSFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVG 515 Query: 674 LK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 T E+ A F +I + + + S + R Sbjct: 516 APRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIVR------------ 563 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + T +Q + P + + +P + R Sbjct: 564 --AAPADWQPGTDAQVAALEQEILDDSQGPPLQAERQSRGGLDVLDTQARNPLWAFVRHR 621 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN 847 L + + + RG H + + + ++ + +++ + Sbjct: 622 LGGRAMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAA 681 Query: 848 ------LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 P + + + ++ + E + Q I + + + + L Sbjct: 682 RTELAGYPAALRELECARAAAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVR 738 Query: 902 ADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 DR+D L G I DYKTG P + ++ QL A+ L G+ +++ + Sbjct: 739 LDRMDRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLML 798 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFI 1009 A + ++ + + + + + L+ V +L + + Sbjct: 799 AQIHARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYA 858 Query: 1010 SHLRLSEKSNIQSE 1023 +++ L + + Sbjct: 859 ANVALRQDDLKFCD 872 >gi|302558545|ref|ZP_07310887.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000] gi|302476163|gb|EFL39256.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000] Length = 496 Score = 137 bits (345), Expect = 9e-30, Method: Composition-based stats. Identities = 60/461 (13%), Positives = 124/461 (26%), Gaps = 65/461 (14%) Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + E + + +I I +T+ + + + ++ S+ L + Sbjct: 3 ALFATAARAEERTGGRGALNFLEEIEAEDIAADTLTRRAARHDAVRLMTAHRSKGLEWRL 62 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----HDFEMANGTRH-LI 698 +++ G+ EG+WP + L L A + A R L+ Sbjct: 63 VVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLV 122 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY---- 754 T + SR+L L V +R +L TT P Sbjct: 123 VTAVQAPADDGDQPSRFLTELGV--EPKDVTGRPRRPLSVAALVAELRATTVDPRVSDTL 180 Query: 755 -------------------------------------KRPKPFPPLEAQPRTYSFSEIKQ 777 R + QP S S + Q Sbjct: 181 REAAAQRLARLAALADEDGRPLVPSAHPYRWWGMFEPTRSRVPLRDRDQPVVLSGSALDQ 240 Query: 778 LIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 L N + R + G + H ++ + + ++ Sbjct: 241 LANTCALQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGHTPADLDVLMERL 294 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG- 895 + + + FL+ ++ + + + + Sbjct: 295 DSVWNALAFDAPWKSAQEKENARV--ALERFLKWHVMDRTGRTPVASEHDFDVTLGAGDY 352 Query: 896 -IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + + G DR++ G + D+KTG P + PQL++ A++ G+ + Sbjct: 353 EVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEVEHH--PQLAVYQLAVREGAVDEAF 410 Query: 954 CR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + ++L+Q K A + E Sbjct: 411 GGTRPEPGGAELVQLRQGAAKRDGGETLPKVQAQKPPEGEW 451 >gi|327398225|ref|YP_004339094.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411] gi|327180854|gb|AEA33035.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411] Length = 933 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 72/510 (14%), Positives = 155/510 (30%), Gaps = 68/510 (13%) Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 +DE + + + L + I+ + + ++ V + Sbjct: 440 GIDEEKLQEFELESQLFQLLQTHIIDAIDNLPDRSIDLKFAYQLTKEILKDIQVPFEGYP 499 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + I+G LE+R L+FD +I+ +NEGV P +P L ++ L L + ++ Sbjct: 500 LKGIQIMGMLEARSLSFDEVIVADVNEGVLPSIDKIDPLLPEEIKVALGLTSFKQKEALV 559 Query: 685 AHDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 ++F ++ I + I SR+ ++L++L Y Sbjct: 560 KYNFFRLIYSSSKAHIMYKVGSTGMEKFIKSRFAEQLILLEELKGKKLNF-----YTPKI 614 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + ++ + +++ +EI +N PYA Y I ++ + Sbjct: 615 NLTVAGDSKNYIEKDEEAINYFNSKISFAPTEIDAYLNCPYAHYLGYIKEIKPRISLEDK 674 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTP---------EINHLMKQIIDSHFEKENLP---- 849 + G + H ++ E + K + I +H ++ Sbjct: 675 FEANVLGNIIHKLLEEGFAEFKGKELGKDDLEKIRKNTLRRLDNIFKNHDKETKDFLDKL 734 Query: 850 PHIDIIWRHLFHKI-SHSFLE--HEEKIQSSIEKIFVNIP---AKMAI-ESIGIHLTGFA 902 + + + K ++ K E + + + ++ + L G Sbjct: 735 SEFEKLGLPIILKFRLSNYFAVITNSKDFKPFEVVETEYDRGTFDIELSPTVNVTLWGKI 794 Query: 903 DRIDLLKSGFVDITDYKTG----DNPKKE--TAQKLI------------------DPQLS 938 DRID + + I DYKTG K+ + QL+ Sbjct: 795 DRIDKVGD-VLRIVDYKTGMHSLKPKVKKIIQVSNHLKYDLFNDEELKKVRDTVVSFQLA 853 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 + + D YI + + D E K L + Sbjct: 854 IYMLIITN---EWKDKEITTEFHYIGKSNIIEKGPTSRD---------IEIYKKLLQYTL 901 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++N + + Y++ Sbjct: 902 NHMRNSGHIY----AIPSDRCSFCPYNYFC 927 Score = 47.2 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 21/164 (12%) Query: 53 TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 KR I+ + + ++ + ++ + V+ + + S + R L Sbjct: 38 NKRPIRFIEKQIS----PEAALGVDFFTIDEFVQWIVAKYSHPAPTIQ---SKLSRELYF 90 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 LI + + A + AK L+ + D I+ + + L Sbjct: 91 LDLIKSTIGEEKPLFGG-----------DDAQLLGWAKRLSSLFDEIDRQLLD-KKLANF 138 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L + LK + E L + ++ Sbjct: 139 QYIEAIDEAQLILERLKSLYAKYREDLKS--FTYSGDSFRRAVK 180 >gi|332673205|gb|AEE70022.1| conserved hypothetical protein [Helicobacter pylori 83] Length = 778 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 135/397 (34%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKDSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898 + + N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740 >gi|319763162|ref|YP_004127099.1| exonuclease-like protein [Alicycliphilus denitrificans BC] gi|317117723|gb|ADV00212.1| exonuclease-like protein [Alicycliphilus denitrificans BC] Length = 855 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 99/680 (14%), Positives = 184/680 (27%), Gaps = 78/680 (11%) Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396 L + + L A + +EA A + + AL DR Sbjct: 208 CAAWGDRALALPLWQAPTGQGRIRLRRALDAEDEAQRAAACAIAHVQAGRVPVALAGTDR 267 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 L RR+ L G+ G LSTT ++ + + L A A+ +K Sbjct: 268 ALVRRITALLQGAGLAARDENGWTLSTTRAAAQVMAALRACAWDAGSDAVLDWLK----- 322 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + + W R + Sbjct: 323 ------------------------------------AVPVIEEPALRALEQWLRRNAVRR 346 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 A + + + +++W + LQ + + + Sbjct: 347 WSGAPGRAQGRPAIAATIAQVEALRAPMRAARPLAEWLRGLRQLLQASGQWDALQQDDAG 406 Query: 577 FEEEGKTLSSLFSK---IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL--FIL 631 + + + G+ + + ++ ++++ KP E+ + +L Sbjct: 407 ERVLLELHLAEGLEDSLADAEGAGRRLSPGDFGHWADQVLEATRFKPDWEQDAAADLVVL 466 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 + F L+L G +E ++ + L L T E + A Sbjct: 467 PLPQLLARPFAALVLAGCDEKRLQAAPEPPGPWTQAQRQALGLPTREALEAAQRAAWADA 526 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 T + E P +AS + L + + L Sbjct: 527 LQTPWVDVLWRASEGGEPLLASPLVLALPPALHAQAPQDTR------------LPRAVAP 574 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 RP P S S L + PY YA R L L + + D+ D GT Sbjct: 575 GATPRPWPVGAR-LPVAQLSASAYADLRHCPYRFYALRQLGLQEQDELEAELDKRDFGTW 633 Query: 812 FHNIITELIKKRINKNTPEINHLMKQI------IDSHFEKENLPPHIDIIWRHLFHKISH 865 H ++ + + T + ++ Sbjct: 634 LHAVLQRFHEGLRDAPTRDAAERSARLDAAASQAREQLGLAGSDFLPYASGWPQLRDGYL 693 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF----VDITDYKT- 920 +L+ E + + V +A++ + L G DRID K + DYKT Sbjct: 694 RWLDEHEAAGARFARAEVEAQRHLALKGGSLELVGKLDRIDEAKDAEGRAGTLVIDYKTE 753 Query: 921 GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 G + Q D QL+ AA + G R Y+ + ++ + Sbjct: 754 GSQTTRARVQAGTEDTQLAFYAALMPEG-------RGPLRAAYVNVGERGETRTFEAPDV 806 Query: 980 KYSADELSEKSLKNLIEIVT 999 + D L + I Sbjct: 807 EQLRDALLAGIRDDFDRIAQ 826 >gi|57242576|ref|ZP_00370514.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57016861|gb|EAL53644.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 794 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 116/348 (33%), Gaps = 35/348 (10%) Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + K + +G LESR L+FD +I+ NE + PK + FL+ +++ L + Sbjct: 414 SFKQSYIGGGAVTAMGILESRGLSFDGVIVVDFNEDLIPKRSVNELFLNNEVRTKAGLIS 473 Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 EK +E + + E SR L+ L + K Sbjct: 474 YEKRENLQRFYYEQLFKNAKKISICYVENEEKS---RSRLLEDLEFRLDLTKEFSQKA-- 528 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 YL+ + + P S+S + + + + I L Sbjct: 529 --YLNALKLNYKAKQINLEPPRAPKLKHNLFATPLSYSRLTLFLKSKRTYFYKYIKHLKE 586 Query: 796 IPHFKKDPDRTD-------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 K D + G H I+ K + +++ S EKE Sbjct: 587 PRELKMDIKEQNDRKRLKNLGIFTHRILELYYKYYNFFD--------EKLFTSLLEKEGQ 638 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI-FVNI--PAKMAIESIGIHLTGFADRI 905 +D + L F + E++ I + + + +ES I LTG DRI Sbjct: 639 KEGLDALDLELLKMKFKEFAKKEQERFKQGYHIKHLELNMDKSIILESQRIELTGKIDRI 698 Query: 906 DLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 D + G + I DYK+G P+K QL+ + + Sbjct: 699 DSNERFGEL-ILDYKSGKIPEK-------SYQLAFYKLLYDENADATF 738 >gi|163857868|ref|YP_001632166.1| hypothetical protein Bpet3555 [Bordetella petrii DSM 12804] gi|163261596|emb|CAP43898.1| conserved hypothetical protein [Bordetella petrii] Length = 990 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 103/937 (10%), Positives = 226/937 (24%), Gaps = 82/937 (8%) Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177 L + + + + + A+ L ++ + L+ E+ Sbjct: 89 RLVRLLKGEGMPVAVDPNALITLEQVGRLPAAQTLVLTVNNRLARRLTLDLAAQLRRERQ 148 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 ++ E E A P A G + + T Sbjct: 149 VSELPRVLPLAAWLAEAGGELAFEPGAELPAHRLDAFATQMVWADAIGAEEAGRVLLDTA 208 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 A A T+ + V G D + + + + + Sbjct: 209 QAAALAMDADTLMDEWR-LRVPDGADTDEYRGFSRWRRRYRERLAAIDAEDANQGYARVL 267 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 + L + L ++ + ++ T + E P Sbjct: 268 RALQRGGVAAPRHLVLAGFTDISPRFAALLDAFQQGGATLAWLGDTLGEAAAPLRHGADD 327 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 A A + L R V L G +++ Sbjct: 328 RGAEWRAAAAWAAQRLAEQP---DGRFAIVSAQLQAESPFARRVVGQALAAGGHAFNVAV 384 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G PL+ + L+A+ + A V G + A Sbjct: 385 GRPLTEWPAVRAALAWLHALADMAQAGAADAPVLGAALLAGHCAGDRRDLARLAAIDARW 444 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + I + + + D+ + I + L Sbjct: 445 RRQARARIDAARWQRDLAEGAALSAAWPAALERWQQAGDRLTTDRWMPVIRAALVALGFP 504 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + G + + +L Sbjct: 505 GERPLDSVGYQVMGAFGELLGRYAALAPAAGLL--------------------------- 537 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + ++ + +P+ + + L +LG LE+ ++D + + GL + V P Sbjct: 538 ---DGRAAVRLLASAAAASSFQPQRDPLARLDVLGLLEAEGGHWDGIWILGLTDDVLPAT 594 Query: 658 TAKNPFLSRVMQSDLNLK--TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASR 714 NP L + T E+ A + ++ + + + S Sbjct: 595 PQPNPLLPLTVLRQAGAPRATPERERQWAEALYAALCRCAPEVVVSHAHLDGERELRPSP 654 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + + + + +++ + P P P P Sbjct: 655 LIADVPPMAWQAPAAAAAE------VLPQQVLDDERGPPLAAPAPDSPRAGATGGLDV-- 706 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--------- 825 + +P + R L + + ++ RG H + + + + Sbjct: 707 LDTQARNPLWAFVRHRLGARALADYADAANQNVRGQFLHRALELVWRMLPDQEHLHDAMA 766 Query: 826 --KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + + +++ D P + + + ++L+ E + + V Sbjct: 767 QGRLPGLVEQAVQEAADEELRAY--PRALRELECERARAVLAAWLDLE-ARRLPFQVAQV 823 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSL 939 + LT DR+D L G I DYKTG P + ++ QL Sbjct: 824 EE--THQWSRGPLALTVRLDRLDRLADGRAVILDYKTGMAPGNPESDWARARPVNLQLPF 881 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 AA L VA L ++ + D + + + K + Sbjct: 882 YAAVLS----GDTPDADVAALVLAQIHARQVAAAGLTDTELGLEGVAAADAAKGFEGLAW 937 Query: 1000 L-------------LQNGEQPFISHLRLSEKSNIQSE 1023 + ++L + Sbjct: 938 RDILLRWRTAVENLADEYAAGYAANLAYRRDDLKYCD 974 >gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] Length = 1144 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 115/1097 (10%), Positives = 246/1097 (22%), Gaps = 142/1097 (12%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 70 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 129 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 130 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 184 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 185 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 242 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 243 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 302 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 303 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 362 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 363 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 422 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 423 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 464 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 465 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 524 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + D I+ Sbjct: 525 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 584 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L + + LV + S Sbjct: 585 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 644 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593 +++ ++ ++ Sbjct: 645 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQ 704 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 705 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 764 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 765 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 824 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 S +L L + D +P R Sbjct: 825 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 884 Query: 771 SF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + P + RG Sbjct: 885 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPN 944 Query: 813 HNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPPH 851 H ++ L++ + P+ + + P Sbjct: 945 HLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPG 1004 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 +++ ++ V +P +M I + G D + + G Sbjct: 1005 AADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 1062 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + D+KTG P A + QL++ A + V FY ++ + Sbjct: 1063 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 1119 Query: 972 DCITNDKKKYSADELSE 988 A L++ Sbjct: 1120 VPDELPAPGELAMLLTD 1136 >gi|332799906|ref|YP_004461405.1| UvrD/REP helicase [Tepidanaerobacter sp. Re1] gi|332697641|gb|AEE92098.1| UvrD/REP helicase [Tepidanaerobacter sp. Re1] Length = 970 Score = 136 bits (343), Expect = 2e-29, Method: Composition-based stats. Identities = 122/1009 (12%), Positives = 273/1009 (27%), Gaps = 150/1009 (14%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKS-----------TILPIIKSLGDVVEEKFTA 91 + + TK+A E+R + K+ + I ++ Sbjct: 46 DIDEIVAITYTKKAALEIRERLRKEMIKRKDEGDFSRCLEKLGVAYIGTIHSFCMRLLME 105 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 + + + + + +++E R + + + I D + S L+ Sbjct: 106 NPVEAG-----IDSDAKVIEEYRSKAWMKESIRETIIDNLENKSVFQLTSELGFSKLSYE 160 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 + ++++ ++ + + ++ + + A ++ K + + E Sbjct: 161 IYELMNKMQNQGLRPSVINTMAETED---EKAIALLIEKTYKLYNFKKEEQFFLDYEDIL 217 Query: 212 IALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + E+ ++ I+I ++ + + N + D Sbjct: 218 QKTLDLLKENKAILSEYQKKFRFILIDEYQDLNFVQDEILRLLGKNTN---IFVVGDKKQ 274 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + Q L D ++ + + Sbjct: 275 SIYGFRGARVELFEKLRKDLER----QGQALTLKDNFRSDDRIIEHVNQSFENLIEGYEP 330 Query: 327 ISKSFLPPDTSDMRNT--DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS-LD 383 I + +++ + QK +A + +E++ + Sbjct: 331 IKANRRHGGQNNICFLTMESQGTMSERRQKEGEMIAKKILEMISDESVKVFDRETQKYRR 390 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDI-SAGIPLSTTLHSSILTSLLNAIFKLND 442 + + A++ + + I + G + + +IL +L F+ D Sbjct: 391 PSFRDFAVLLRRKTHIKHYVNAFKAHEIPFYVADTGSIMEDSSVKNILCALKTVAFR--D 448 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + + H L K E E V +R I L+ + Sbjct: 449 NINLYGTLSH-LFKISDEELA--------EYVLMR----QELISGLEEDASYDDIPESLA 495 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 +D+ L I +D T L Q Sbjct: 496 EAFKLILMWCKIKDRATLRELAQRI-----------------------ADDTMLLAAAAQ 532 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 N L+ L + + +E S E ID+ Sbjct: 533 NDLLEVENVFKFLDLCRDYDEQGYTLREFLEELSDFGWEQQEAIDV-------------S 579 Query: 623 EKSSTLFILGTLESRLLNFDTLILGG--------LNEGVWPKNTAKNPFLSRVMQSDLNL 674 E+ + + S+ L F +IL E ++ R L Sbjct: 580 EEEDVVKFVTIHSSKGLEFPIVILADSGQEISGIFTEILFEPKIGLALKKDRDKWEMLKK 639 Query: 675 KTAEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 +K I +A + R + +++ +WL + + Sbjct: 640 YLNQKEIEEAKRLLYVALTRARDYLLISGEMKSDKKDSFLKWLN-------PESITDSVD 692 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFP--------PLEAQPRTYSFSEIKQLINDPYAV 785 G D + + KP + PR++S + I + P Sbjct: 693 DGISIQTIWELSDVAVNTVNLQENKPKLGKKQIYLNKHISVPRSFSVTSIGEFARCPRRY 752 Query: 786 YARRILKLDFIPHFKK-----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 Y + + +K +RGT+ H +I ++ K+ I N E + Sbjct: 753 YLSNQMGIPERLFYKDCGDLSRLSARERGTIVHELIEKIHKENIKVNNKEKILAIN---- 808 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ R ++LE + S ++ +P + +TG Sbjct: 809 --------SYPLNFQDRKFIESCLQNYLESDLYNTSG--VVYSEMPFTYHLGERRY-ITG 857 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DR+ L + G + D+KT K Q+ A A+ Sbjct: 858 KIDRLILEEDG-ATVVDFKTNSMI-GSDLMKAYHLQVMAYALAVSEIC------------ 903 Query: 961 FYIRLKQKFKIDCITNDKKKYSADEL---SEKSLKNLIEIVTLLQNGEQ 1006 + K + + K D L EK + I+ ++N + Sbjct: 904 ---GIIPKKAVIASLFEGKIVELDILLSSLEKCKAQICSIINRIENDDF 949 >gi|217033350|ref|ZP_03438781.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10] gi|216944291|gb|EEC23716.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10] Length = 778 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H + E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740 >gi|260904112|ref|ZP_05912434.1| UvrD/REP helicase [Brevibacterium linens BL2] Length = 1086 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 124/1078 (11%), Positives = 272/1078 (25%), Gaps = 176/1078 (16%) Query: 51 VPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD-LLLSYNLNPPVSNIQRL 109 P + LR+ P +S+ A + + +S + Sbjct: 52 TPNRDHADVLRNRLAVPRDAVLASAP-ARSISSFAYGIARAAHTTQTGDDLEFISGADQD 110 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET-------- 161 + LA L+ ++ P P + + + D ++ + Sbjct: 111 VFLADLLAGH-----ELGHGRGPAWPAEITAEVRSTSAFRTEVRDFLNRVMEFDFGVRIP 165 Query: 162 ---EEKKWE------------DLHALKNEKYGMWWLLAADFLKIASK--YWTERLVELNA 204 E L + W A L+ +A Sbjct: 166 APSAGGGPEQTPEFVFDFGRSALDRVLEHHRDPRWEAVAQVLEEYLDIMSMPGYGGTDSA 225 Query: 205 SSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + ++R AE ++ G A+ L+ + G+ Sbjct: 226 TVLARAAFEILREPAEVTAGRAWTFAPDVVPTVVLADGVQDFPAASWGLLEQLRE--RGS 283 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED------- 309 + T ++ + ++S+ ++T + D L +D Sbjct: 284 ALALFGSPETVTGRFHGADASIIDRSASDERFTTVVLPEVKNTADELVAVGDDFGRRITT 343 Query: 310 -VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + R+ + P D + E + K + V A + R Sbjct: 344 RWGLQHMPRPDGAARTGESADGIEPVDAGPQQGEGEPEPVASSPDKVETHVFEGAASSYR 403 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 A + + A++ + + AR V EL+ G+ PLS ++ Sbjct: 404 YLARRVTNFVEDGHA--WSDVAVLCRNTSTARVVANELSASGVATANIM-QPLSIDPATA 460 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L LL +D +IA LA + + + Sbjct: 461 PLLELLARTPDFDDDESIAAQALS-LAGSIYVRLDPVQIRR------------------F 501 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 K +V + K++ + ++ + + +L + + + G Sbjct: 502 KRVVRKQFPAAKSSNSLAQALRSDIDDSSPPGLATISRMLHAAAEVGSV-DPHEALWGIW 560 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + T + + E +L TL+ S + Sbjct: 561 EAAGIADKWQT--EVLKDPESVANAHLDSVLRLFTLAEKISD-----RGGFTARSFAGIV 613 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + I +++ + + + L +I+ +NEGVWP + L Sbjct: 614 AEQDIAQDSLAAQAGTDDLVQVGTPSSLAHLRVPLVIIAEVNEGVWPNPKIRGGILGLDD 673 Query: 669 QSDLNLKT--------------AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 S + L + + + ++ + + S Sbjct: 674 LSAVLLTGETVTSDPGYHSHAKRTNLREEGELFYTALTRAEEHVIVTAISD--AESNPSP 731 Query: 715 WLQRLLV--------------------------------------LGGTDFFDNLKKRGQ 736 + L + + + Sbjct: 732 FFDVLAAGTAKGTQDADGYAITHEDELLPLSLAEMAAHARARLLRAAADSEQETAAEDVE 791 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------SFSEIKQLINDPYAVYA 787 + L T+ + S S+++ + + Sbjct: 792 EWAQLMAALSATSSTVDPPERWRETEDITSAQPLYGAEDLVKVSPSQVESFTDCSLRWFL 851 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 R GT+ H +++ +D F+ + Sbjct: 852 TRNGGDRP------GSLAQSLGTIIHAAAENY--------PQGPASAIREFVDEEFKTLD 897 Query: 848 LPPH-IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA---KMAIESIGIHLTGFAD 903 L K++ E+ + S E I V + +TG D Sbjct: 898 FDAEWERDREHVLAMKMADRLGEYIKD--SPGEPIGVEAQVYATGVDENGQEWKVTGRLD 955 Query: 904 RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVA 958 RI+ G + I D+KTG P + + QL + A+ +G Q+ K Sbjct: 956 RIERTPEG-IRIVDFKTGKNTPTGQEMPRHA--QLGVYQEAINSGSITIGDDQVVDAKAY 1012 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 + L+ ++ DE + + ++ ++ E F + + + Sbjct: 1013 GAELVFLR---YTKQKKREQSALEIDEDPGWARDLINDVSGRMRAAE--FPARVEPQK 1065 >gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] Length = 1144 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 115/1097 (10%), Positives = 246/1097 (22%), Gaps = 142/1097 (12%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 70 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 129 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 130 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 184 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 185 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 242 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 243 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 302 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 303 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 362 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ Sbjct: 363 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSV---- 418 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 + P V + + E IA LR + Sbjct: 419 --------------AVRALRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 464 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 465 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 524 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVA------LRGNKNSYDIMDLKSLVLDRIA 497 A ++ P + G + + + + D I+ Sbjct: 525 AAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAIS 584 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L + + LV + S Sbjct: 585 DPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGG 644 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGK------------------------TLSSLFSKIIE 593 +++ ++ ++ Sbjct: 645 WAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQ 704 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + A +EW + + + +SS L L L + Sbjct: 705 VLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVL 764 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPT 710 A LS + L + + + + P Sbjct: 765 DTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPR 824 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 S +L L + D +P R Sbjct: 825 GPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRG 884 Query: 771 SF------------------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + P + RG Sbjct: 885 DVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPN 944 Query: 813 HNIITELIKKRINKNT------------PEINHLMKQII---------DSHFEKENLPPH 851 H ++ L++ + P+ + + P Sbjct: 945 HLSVSSLVELVGDPVGARQRLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPG 1004 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 +++ ++ V +P +M I + G D + + G Sbjct: 1005 AADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVFVDPDG 1062 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + D+KTG P A + QL++ A + V FY ++ + Sbjct: 1063 GATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VRSGITV 1119 Query: 972 DCITNDKKKYSADELSE 988 A L++ Sbjct: 1120 VPDELPAPGELAMLLTD 1136 >gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24] gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24] Length = 1183 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 103/1090 (9%), Positives = 261/1090 (23%), Gaps = 158/1090 (14%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F E + + P + + L L + + + +LA ++ + Sbjct: 110 IFPEGLLSEDALEPKVSTYHSYASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAFD 169 Query: 122 KLPDIIKDLYPESPLSLPISPAN----AIWLAKNLADIIDIIET-EEKKWEDLHALKNEK 176 + + ++ A+ +++ + E + + Sbjct: 170 GEYEHFRAAKSTLVKAVIQLAGECAEHLRDPAEVQEWLMERVAEFEGLPYVAGAKKNPTQ 229 Query: 177 YGMWWLLAADFLKIASK---YWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKG 228 ++ + + A R A + + Sbjct: 230 AAGELGAMLRTRASVAEMVGRYADAKRVRGALDFGDLVALAARVASEIPLAAEVERQRFK 289 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 +++ + A L S + G V D + + + Sbjct: 290 VVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAVGDPNQSIYGFRGASAGQLFHFVREFPA 347 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 +++ +L + + + + +N + + P + + Sbjct: 348 LAGDSFAV-APTSYLTTAWRNGRNILSAANVISAPLSAAALQAGPAGERQSAGSVEVPPL 406 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK----------SALITADRNL 398 P+ V + + +EA +IA + + ++ A++ R Sbjct: 407 QPSPAAAEGKVVIGRFATDEDEARAIAADVLRYRLTDFEEPVGADRVAPAMAVLCRRRAQ 466 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V+ E GI +I L T L + L + ++ L+ + G Sbjct: 467 MECVRREFELRGIPYEIVGLGGLLDTPEIVDLVATLRVLADPGRSDSLMRLLAGARWRIG 526 Query: 459 FPEKYLSR-----AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + R ++ + + + + S Sbjct: 527 PADLMAFRDWSSFLARRRGNPRTDADEADDPDAAVIESDITDSPSLVEALDWLPREGWTS 586 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + L+ +D + L + L + + + + ++ Sbjct: 587 AHGRTLSPAALDRLHALSAELRQLRGFMGDDLTTL-LGEVERAMLLDIEVAARPGVSIHQ 645 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 + ++ F + A W++ G V + +L Sbjct: 646 ARRNLDAFHDAAAGFLHTSHRVDVLAFLA--WLEAAATEEGGLDVAAPEVNHEAVQLLTV 703 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNP-----FLSRVMQSDLNLKTAEK--------- 679 S+ L +D + + GLN G +P + L ++ D Sbjct: 704 HASKGLEWDVVFVPGLNAGAFPSSRDSRWSSGSAALPWPLRGDRADLPQWDTDQPDQKGW 763 Query: 680 ---------------YIGQAAHDFEMANGTRHLIYTRSLRENN---IPTIASRWLQRLLV 721 + + + +++ S S +L L Sbjct: 764 LDAEKNFKADVQAHGEAEERRLAYVAYTRAKFVLWVSSAAWVGSRAGMAEMSPFLSELAP 823 Query: 722 LGGT--------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------PFPPLE 764 L G + + R + + + + + P + Sbjct: 824 LAGIGAGEAETVAAEGSTRGRTEAAAGTAAVVHAASVEESLVPAESPLTQDLELAHWPYD 883 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-------------------R 805 +L P A PD Sbjct: 884 PLEGPADPRTGARLRLVPGRRAAMEAAAGRVREALAAGPDTEPAADSDAGEGPRQLRSFA 943 Query: 806 TDRGTLFHNIITELIKKR------------------INKNTPEINHLMKQ---------- 837 + ++ ++ + + + +++ Sbjct: 944 ANWAKEADLLLERRHRRATVQDVHLPGHISASTFVDLGDDPAAVLARLRRPVPREPGMSA 1003 Query: 838 --------IIDSHFEK-------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 ++ HF K E I + + +F E ++ Sbjct: 1004 RKGTAFHAWVEEHFGKAGMLELDEAPGSDSHIDEAYGLDSMVETFRNSEWAHRA---PAH 1060 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 V +P + I + + G D + G D+ D+KTG P + QL++ Sbjct: 1061 VEVPVETRI--GEVVVRGRIDAVFRDADGGWDLVDWKTGRRPAAGQLKV-KAVQLAVYRL 1117 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 A + V FY + ++ + +++ +L ++ Sbjct: 1118 AWAR--LKGVPLDSVRAAFYY--VGENQVVRPHDLGTAEQLEDIVTAALGGTTALLNA-- 1171 Query: 1003 NGEQPFISHL 1012 +G S Sbjct: 1172 SGPASGTSRP 1181 >gi|319788732|ref|YP_004090047.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7] gi|315450599|gb|ADU24161.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7] Length = 1113 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 108/926 (11%), Positives = 237/926 (25%), Gaps = 154/926 (16%) Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 L D++ + + L + K + L + + L + N + Sbjct: 117 FIGELTDLLPRLRQSGITPQAL-QMAAAKLEGSVAMKLADLGAIYENYIFELEKANMNDK 175 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 + A+ + ++ R++ V +D Sbjct: 176 LSVMEEAAELSAK-CDVFDGRSVFVSAFADFSYDEKRMLEQCIIKGRSLTVSLLIDDSF- 233 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + THP L R+ K E+ + Sbjct: 234 -----------------VSRCHTHP---FDITLAARQCIRDMTKLHDQPLKEIRAEDINC 273 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK- 386 + + + + + P + V ++ AD+ EEA I + + E+ Sbjct: 274 CHPDIRQLSEHLFDYNK-----PEYKAAGDSVKVLAADDVYEEADYICAEICRLVREDGY 328 Query: 387 --KKSALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLN-AIFKLND 442 A+ D V + R+ I + + + + ++ + + Sbjct: 329 TFNDIAVTVRDIESFGAVISGVMERYDIPFFLDKRDSVDASAIVHYINTIFRTVLTRKFK 388 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 I L+K PL L+ + LE +R + + + Sbjct: 389 TDNIIKLIKSPL------YGILNYEISDLEDYCVRWGVDGDMWNEDFTAA---------- 432 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-- 560 S D L ++ + T ++ + + Sbjct: 433 --------PDSGIDLGRINELRKRVITPLVSFKEACTGASAAQISRAFYQLLDDLDLSGQ 484 Query: 561 ------LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + ++ + ++ S I E K + D+ + ++ Sbjct: 485 TYSLVKRVSTSDNDTETEMSRGLKQLWTMSLSAVRSIYELLGDEKITMRSYYDLYSLMLS 544 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 V +K + I+ SR L +NEG++P L+ + L L Sbjct: 545 QMKVSEPPQKLDCVRIVDAAHSRFGGVKVLFAAEVNEGIFPAAVRSRGLLNEHEKELLRL 604 Query: 675 -------KTAEKYIGQAAHDFEMANGTR--HLIYTRSLRE-NNIPTIASRWLQRLLVLGG 724 A + + A T L S + S ++ + + G Sbjct: 605 KEDIDITDNALNSLKREKLAAYTALCTPTDKLYVLYSRSDLLGSEKRPSALVKEVRGILG 664 Query: 725 TDF-----------------------------------FDNLKKRGQCYLDWTRKLDYTT 749 D + Y D R LD Sbjct: 665 IDVMNINTLPPDRFCTSYKSAYSVYIEHSRDNTVSVSSIRDSLMGSAYYHDKLRALDEAG 724 Query: 750 KQPHYKRPKPFP---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + ++ + ++ S +++ P+ + L+L K D D Sbjct: 725 RDKPFRLSESCAKEVFFASETAEVSPTKLDNYFKCPFMYFCNYGLRLS--RSQKMDMDGL 782 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-------- 858 ++G + H ++ + I + ++ + + + Sbjct: 783 NKGLMIHEVLEKAIGSQ-DRTPEGNREHFLNMTEEQITELIEGSFTKYYNDVFCGDFGKS 841 Query: 859 -----LFHKI------SHSFLEHEEKIQSSIEKIFVNIPAK---------MAI-ESIGIH 897 F + +++ E S + + + I Sbjct: 842 KTFIYRFENMKQQAFNIVKYVQRELSNGS-FAPAVTEYRLTKENGADHLDLTLKDGRHIV 900 Query: 898 LTGFADR--IDLLKSGF--VDITDYK--TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 L G DR I ++G V I DYK N ++ Q+ + + L Sbjct: 901 LIGTIDRADIYEDENGRRFVRIVDYKFRRQANFDLGELYCGLNLQMLIYLSVLLETGNPV 960 Query: 952 IDCRKV--ANLFYIRLKQKFKIDCIT 975 ++ A +FY++L Sbjct: 961 NPDMELEQAGVFYLKLIGDAAKFSDD 986 >gi|254779052|ref|YP_003057157.1| hypothetical protein HELPY_0364 [Helicobacter pylori B38] gi|254000963|emb|CAX28907.1| Conserved hypothetical protein [Helicobacter pylori B38] Length = 776 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 132/392 (33%), Gaps = 58/392 (14%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + +S S + + Sbjct: 494 NLHIEPIKDAYTLFAPTPLKDYQEEEIKAAIPKD--------------FNFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + + P + + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPHALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNP----------KKETAQKLI-------DPQLSLEA 941 G DRID + + DYK ++ + L D Q+++ A Sbjct: 649 KGRIDRIDKTADNEIILLDYK-----FKNDLKLDNMSEKQRKSLRPIEQISTDYQMAIYA 703 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 ALK + + F+ L++ ++ Sbjct: 704 FALKNLGYK-----EPIKAFFYDLRKGELVEE 730 >gi|56964349|ref|YP_176080.1| hypothetical protein ABC2584 [Bacillus clausii KSM-K16] gi|56910592|dbj|BAD65119.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 900 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 86/752 (11%), Positives = 194/752 (25%), Gaps = 141/752 (18%) Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 ++ P ++L +A E EE I + + + + A++ + + Sbjct: 206 DRQPVTDGQTGCLSLYKAVTEEEEHIGLIEHIL-TSNTPLSNIAVLFTKSDARAAFMAKA 264 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 + G+ I S L+ T + A+ Sbjct: 265 KQEGLPIAASNRSYLADTP---FYLWVKEALLTPLPSKEA-----------------RLG 304 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 A ++L V + L++ ++ V + +++ + + + Sbjct: 305 AVDSLFAVLGITGRRC-----LRAKQALYAGYGIGDSEVDFFLNQIGKSPLAEGNTIAEK 359 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + L + + T Q + + + E+G Sbjct: 360 AALLVDMLTKMEERTDIPYAP-----------TVKQALLALDGISYAKVETTEDG----- 403 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + + + +L + T+ + Sbjct: 404 ------------------FRQWFQTFAQTLVIGEEPIPKEGISVLSWADVAAFQGSTVYV 445 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702 GL G +P + + +++ + + A F+ + + + Sbjct: 446 AGLALGTFPHPYSLLGYFQESDLTEINKRGVPLTSRTRSVQALQFQQLINSGMDVYASYV 505 Query: 703 LR-ENNIPTIASRWLQRLL--------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + + P + S +L +K G Y + Sbjct: 506 CGLDRDSPALPSPFLLDFQLVGFWNYQNRLNNGIGTYSRKDGTAYRGELDHFQKRLQHLQ 565 Query: 754 YKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + E + + + P+ +L + + GT Sbjct: 566 LGQEWLSDAQQAKEKAKPAVAVTAFEAYARCPFRYGLEWLLGIKPPAGQNEGLPANKIGT 625 Query: 811 LFHNIITELIK-----------KRINKNTPEINHLMKQIIDSHFEKENLP--PHIDIIWR 857 L H I L + E+ + ++ F ++ +P P+++ Sbjct: 626 LIHQCIETLYRHKLNVIGKPFSTLSEAEKDEVPYWLESEWRRRFNEDIVPFVPYMNRFEL 685 Query: 858 HLFHKISHSFLE-----HEEKIQSSIEK--------IFVNIPA---KMAIESIGIHLTGF 901 + E + ++ + +P + + + +TG Sbjct: 686 EQEE---TWWANKLRLWWEAERARFWDRKELADAYIEGLEVPIVLEDFPLGTTKLKVTGK 742 Query: 902 ADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DR+D+ +G + DYKTG K E A QL + + + VA Sbjct: 743 IDRVDV-ANGEKVLYDYKTGKAALKLEEASHGTKLQLPMYSYIIGK-------QSPVAGA 794 Query: 961 FYIRLKQKFK--------------------IDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 YI L K N + + EK + E + Sbjct: 795 TYISLLDPGKRAGNGVWKPEHVGKQSIFGVSAQCRNKEDALGEEAFMEKWH--IHERLQE 852 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 L G Q + + Y + RV E Sbjct: 853 LWEGMQ--TNMSVVPLDCAASCPYKAICRVTE 882 >gi|330825225|ref|YP_004388528.1| exonuclease-like protein [Alicycliphilus denitrificans K601] gi|329310597|gb|AEB85012.1| exonuclease-like protein [Alicycliphilus denitrificans K601] Length = 855 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 98/680 (14%), Positives = 183/680 (26%), Gaps = 78/680 (11%) Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADR 396 L + + L A + +EA A + + AL DR Sbjct: 208 CAAWGDSALALPLWQAPTGQGRIRLRRALDAEDEAQRAAACAIAHVQAGRVPVALAGTDR 267 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 L RR+ L G+ G LSTT ++ + + L A A+ +K Sbjct: 268 ALVRRITALLQGAGLAARDENGWTLSTTRAAAQVMAALRACAWDAGSDAVLDWLK----- 322 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + + W R + Sbjct: 323 ------------------------------------AVPVIEEPALRALEQWLRRNAVRR 346 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 A + + + +++W + LQ + + + Sbjct: 347 WSGAPGRAQGRPAIAATIAQVEALRAPMRAARPLAEWLRGLRQLLQASGQWDALQQDDAG 406 Query: 577 FEEEGKTLSSLFSK---IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL--FIL 631 + + + G+ + + ++ ++++ KP E+ + +L Sbjct: 407 ERVLLELHLAEGLEGSLADAEGAGRRLSPGDFGHWADQVLEATRFKPDWEQDAAADLVVL 466 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 + F L+L G +E ++ + L L T E + A Sbjct: 467 PLPQLLARPFAALVLAGCDEKRLQAAPEPPGPWTQAQRQALGLPTREALEAAQRAAWADA 526 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 + E P +AS + L + + L Sbjct: 527 LQIPWVDVLWRASEGGEPLLASPLVLALPPALHAQAPQDTR------------LPRAVAP 574 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 RP P S S L + PY YA R L L + + D+ D GT Sbjct: 575 GATPRPWPVGAR-LPVAQLSASAYADLRHCPYRFYALRQLGLQEQDELEAELDKRDFGTW 633 Query: 812 FHNIITELIKKRINKNTPEINHLMKQI------IDSHFEKENLPPHIDIIWRHLFHKISH 865 H ++ + + T + ++ Sbjct: 634 LHAVLQRFHEGLRDAPTRDAAERSARLDAAASQAREQLGLAGSDFLPYASGWPQLCDGYL 693 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF----VDITDYKT- 920 +L+ E + + V +A++ + L G DRID K + DYKT Sbjct: 694 RWLDEHEAAGARFARAEVEAQRHLALKGGSLELVGKLDRIDEAKDAEGRAGTLVIDYKTE 753 Query: 921 GDNPKKETAQKL-IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 G + Q D QL+ AA + G R Y+ + ++ + Sbjct: 754 GSQTTRARVQAGTEDTQLAFYAALMPEG-------RGPLRAAYVNVGERGETRTFEAPDV 806 Query: 980 KYSADELSEKSLKNLIEIVT 999 + D L + I Sbjct: 807 EQLRDALLAGIRDDFDRIAQ 826 >gi|317177172|dbj|BAJ54961.1| hypothetical protein HPF16_0364 [Helicobacter pylori F16] Length = 778 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 65/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 NLYIEPIKDAYTLFESTPLKDYQEEEIQATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H + E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSAIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID V + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEVILLDYKFKSELKLDNMSEKQRGSLNPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740 >gi|317009003|gb|ADU79583.1| hypothetical protein HPIN_01645 [Helicobacter pylori India7] Length = 778 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 68/397 (17%), Positives = 139/397 (35%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-SFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ ++ + E + S+ L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SKMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + TT ++S S + + Sbjct: 494 DLPIEPIKDAYTLFAPSPLKDYQEEEIKTTIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSIVGSLLHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 KEN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 K---TKENITPKERLDTLIALKKI-QAFYVKEKERFKAKIKILDLEKSFETTIQ--GVMF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT GD E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNEMILLDYKFKSELKLDNMSKTQRGDLSPIEIAQISTDYQMAVYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGELLEEEGLTLQAK 740 >gi|308063219|gb|ADO05106.1| hypothetical protein HPSAT_01795 [Helicobacter pylori Sat464] Length = 778 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 132/389 (33%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 DLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNKIILLDYKFKSDLKLDNMSERQRGGLSPIEIAQISTDYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + + F+ L++ ++ Sbjct: 709 KNLGYK-----ESIKAFFYDLRKGKLLEE 732 >gi|217031583|ref|ZP_03437088.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128] gi|298736699|ref|YP_003729229.1| hypothetical protein HPB8_1208 [Helicobacter pylori B8] gi|216946783|gb|EEC25379.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128] gi|298355893|emb|CBI66765.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 778 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 61/386 (15%), Positives = 132/386 (34%), Gaps = 55/386 (14%) Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + ++ TLE+R + FD +++ NE P + FL+ ++ LNL Sbjct: 391 EANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRQSLNL 450 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 T H + ++ ++ + E + AS L L + Sbjct: 451 PTLLDKKNLQKHYYYQLFKNSKEIVLSYIESETSK---ASNMLLELNLYIEPIKDAYTLF 507 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 D+ + T ++S S + + Y + + Sbjct: 508 ETSPLKDYQEEEIKATIPKD--------------FSFSASSLNAFLTCKRRFYYHYMKRF 553 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 P + + + G+L H ++ E + +KN + + Q+++ +EN+ P Sbjct: 554 KESPKDE---NNSAVGSLLHELLKETYE--KDKNPYALEERLIQLLE---TRENITPKER 605 Query: 854 IIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + KI +F E++ + I+ + + + I+ G+ G DRID Sbjct: 606 LDTLIALKKI-QAFYIKEKERFKAKIKILDLEKSFETTIQ--GVAFKGRIDRIDKTADNE 662 Query: 913 VDITDYKTGDNPK-------KETAQKLIDP----------QLSLEAAALKAGSFSQIDCR 955 V + DYK +T ++ + P Q+++ ALK + Sbjct: 663 VILLDYK---FKSDLKLDNMSKTQREGLSPIEIAQISTDYQMTIYVFALKNLGYK----- 714 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKY 981 + F+ L++ ++ + Sbjct: 715 EPIKAFFYDLRKGELLEEDELTLQAK 740 >gi|317179247|dbj|BAJ57035.1| hypothetical protein HPF30_0938 [Helicobacter pylori F30] Length = 778 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMALSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + T ++S S + + Sbjct: 494 NLHIEPIKDAYTLFESTPLKDYQEEEIKATIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y I + P + + + G+L H + E + +KN + + Q++ Sbjct: 540 TCKRRFYYHYIKRFKESPKDE---NNSTIGSLLHEFLKEAYE--KDKNPYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFNAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + F+ L++ ++ + Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEEEEPVLQAK 740 >gi|15615543|ref|NP_243847.1| hypothetical protein BH2981 [Bacillus halodurans C-125] gi|10175603|dbj|BAB06700.1| BH2981 [Bacillus halodurans C-125] Length = 955 Score = 136 bits (341), Expect = 3e-29, Method: Composition-based stats. Identities = 110/871 (12%), Positives = 231/871 (26%), Gaps = 125/871 (14%) Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 ++DL L ++ ++ + + ++ + L E + +A A+ Sbjct: 57 ITFDDLAELILDETKESYVAIGE--EDRHLFFQQFLEEDALG--GTHDRHQAKAYADTYG 112 Query: 224 KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE---KSTN 280 + + + + T + + L L + I A + Sbjct: 113 QIKRLGLEVEEYTAGLESLKPLFKRYEQATVNENRLLDPEQKILVAANRLSKRPSLMTGA 172 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + QY L L D + + ++S F Sbjct: 173 VVVDGFYDFSPLQYRLITALKKADAPFHVYLPQATFAIAKQTLNDLLSLGFEQKTVHHRN 232 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400 +++ A E+ + + +S ++ ++ Sbjct: 233 ------------DLMTESISVKAASTTEEQYYGLMQDIILSEKPYDAFGIVLADEKADEA 280 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + G+ + S + L +L A + + PL + Sbjct: 281 VLFRVAKFLGVPLQRSKRRSARDSAILHWLDYVLRM-----PSRAATSWEQLPLLELIM- 334 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 L A+ +++E E Sbjct: 335 -----------------------------KLTFKSGASFALAKKSFLATGDVADEGIERL 365 Query: 521 VLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + LV + + Y + +S + + + L Sbjct: 366 IELVRGNVWRKRDTFLAYLHQLERLLDDSELSSLYEQRMR-ESHETWRAQEIAFELHVMT 424 Query: 580 EGKTLSSLFSKIIETGSCIKANAIE--WIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 K+L + +E + + + + ++ + + + + I + Sbjct: 425 YLKSLVQEKRQELEEKGLMAFTIRLDLFREWLHYQLERKKFTIEKGRERGVSIHTWRDVP 484 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----NLKTAEKYIGQAAHDFEMANG 693 L D L + +NEG +P + ++ L T + + F+ Sbjct: 485 LFQGDKLYVTSMNEGTFPAPHSLQGYVQERDLYSLPIPYGAPTQHVFKMKQEAYFDQLFY 544 Query: 694 -TRHLIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT-- 749 ++++ N N P + S +L R + ++ + L + + Sbjct: 545 IAPEIVFSYIKGMNPNEPFLPSPFLDRYVATETYEWTFEKRMEAPFALTVGEQQEKAAHF 604 Query: 750 ---------KQPHYKR-----------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 P +R + + T S + ++Q P+ R Sbjct: 605 LGKGYVINGLSPEIERIHQHVERLKTGEEALSEPLSAQHTLSVTALEQYARCPFRFGMER 664 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN------KNTPEINHLMKQIIDSHF 843 I + D G L H +I + ++ + + + Q ++S F Sbjct: 665 IFAVKEPMKKDVRVSPLDLGHLIHQVIQHIYEEEDLIGQPFHRLSETDKGRIGQKVESVF 724 Query: 844 EKENLPPHID-------------IIWRHLFHKISHSFLEHEEKIQSSIEKI------FVN 884 W K + E E K E + + Sbjct: 725 LTLWEEVEQRYLSLSRLELELIKREWLKRLRK----WWEAERKHFWDHEPVKEMAIYSLE 780 Query: 885 IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSL 939 + I I LTG DRID+ G I DYKTG K E + QL L Sbjct: 781 RSVSLPIRLPSGTTITLTGKVDRIDVDHEG-FTIYDYKTGQAHLKMEEDVPSGLKLQLPL 839 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 A + Q+ +K YI LK+ K Sbjct: 840 YMIA----AGQQLKEKKAYGASYISLKEPEK 866 >gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201] gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201] Length = 1145 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 119/1068 (11%), Positives = 273/1068 (25%), Gaps = 148/1068 (13%) Query: 46 SVTIYVPTKRAIQELRSEFI-----------------EITGKKSTILPIIKSLGDVVEEK 88 + T++A EL + + P + + Sbjct: 73 EILGVTFTRKAAGELSQRIATKLRMLRHAGLIEEPGGDDDAPAAVQEPTVSTYHSYANSL 132 Query: 89 FTA-DLLLSYNLNPPVSNIQRLLELA-RLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 + L L + + + +LA L+ W LP+ + + + + +S + Sbjct: 133 VRSYGLRLGIESDTVLLGQAQAWQLASELVRGWDGPLPEAVPAVNTLTGGVIKLSSEASE 192 Query: 147 WL--AKNLADIIDIIET--EEKKWEDLHALKNEKYGMWWLLAA--DFLKIASKYWTERLV 200 L A + + + ++ + + D L + + Sbjct: 193 HLVEAHRIREFVQRFRLACQDVPPDGRKRTPGKDVVSALSRMEQTDVLAQLVERFHAVKR 252 Query: 201 ELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A R A + + +++ + A L S + +G Sbjct: 253 QESALDYGDLLSLAARIVRVDPHARTVERDRFKVVLLDEFQDTSHAQLALFSGLYG--DG 310 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 V+ D + + N T S FL + + + Sbjct: 311 HCVMAVGDPQQSIYGFRGASSGQLFSFVENFPRRTADGGSEYAATSFLTTAWRNSLSVLD 370 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 V+N + T ++ P V + + EEA + A Sbjct: 371 VANAVAAPLRTAPAWSRSAATVEVP------PLDPAPGAVRGRVRVSRYATDTEEARATA 424 Query: 376 IAL---RMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + R + + A++ R ++LEL I ++ L T S Sbjct: 425 QLIHEQRAAHEGQPLAEMPTMAVLCRRRAQFEPLRLELEALDIPYEVVGLGGLLHTPEVS 484 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS---RAKNALELVALRGNKNSYDI 485 + ++L+ + A+A L+ + G + A+ + + Sbjct: 485 DVVAMLHVLTDPGRSDALARLLAGARWRLGARDLAALGDWAAELERRHESAARGEQDTRP 544 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 D+ ++ +S + ++ + + +V + Sbjct: 545 DDVVMADAVDGSSLVEALETLPRDGWVSSRGRSISPEGMRRLRALREDVVALREVLGDEL 604 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + I + + ++ L + + FS T A W Sbjct: 605 TTV-IHEVEAVLGLDIELAALPGEDPATARRNLDAFTDQAVQFSATTRTHDVAAFLA--W 661 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-- 663 ++ +R +G + P + + +L S+ L +D + + GLN+G +P + Sbjct: 662 LETASREENGLDLPPAHTRHDAVQLLTVHASKGLEWDHVHVPGLNQGDFPSTNSSAWTGE 721 Query: 664 ---LSRVMQSDLNLKT-----------------------AEKYIGQAAHDFEMANGTRHL 697 L ++ D + AE +G+ +A Sbjct: 722 AAKLPWPLRGDASQLPEWSPRVDDVRELEASFGEFAEDVAEHDLGEERRLAYVAFTRAKT 781 Query: 698 IY----TRSLRENNIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLDWTRKLDY 747 + + P S +L+ + + ++ Sbjct: 782 LLELSGSVYRGTGKKPKEVSPFLREARDMAESATPGFEAGPWADPGELEGNPQLDTRVSA 841 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF------IPHFKK 801 + P T S + + A + + Sbjct: 842 LWPYDPLEGPVITRTSRDADGTLSETVLPPAHEGRRARAEAAAQAVRNGGFPHLADVPDE 901 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK---QIIDSHFEKENLPPHIDIIWRH 858 + + G E ++ PE + + S + P + Sbjct: 902 ELAAGEAGARVRRWRHEAELLLARRSDPERPRTVHMPSHVSASALVSMDSDPEGFVSTLR 961 Query: 859 L--------FHKISHSFLEH------------------------------------EEKI 874 + +F Sbjct: 962 RPMPRRPGSAARAGTAFHTWVENFYGDSALLDPDELPGADDHVDEDLDLPRLAETFRASP 1021 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 + + V +P + + + + G D + G ++ D+KTG P E ++ Sbjct: 1022 WAERQPYAVELPVETPV--GSLTVRGRIDAVFRTADG-WELVDWKTGRVPHGEDLRR-KS 1077 Query: 935 PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 QL+L A I V+ FY + D+++ Sbjct: 1078 GQLALYRLAFAR--LHGIPLESVSAAFYYVASDRVVRPLDLADEQQLE 1123 >gi|291060258|gb|ADD72993.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 986 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 84/791 (10%), Positives = 201/791 (25%), Gaps = 116/791 (14%) Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + + T + Q + A+ L L E R + + ++ Sbjct: 139 DAVSRNTFDGRDARAYAQSAEAQDLQTLKAHYEQFLRAHALFEPSWDTPQFCAQGNTYVI 198 Query: 336 TSDMRNTDILE--NKIPNIQKCFSDV-------------ALIEADNEREEAISIAIALRM 380 D E + + + V L N REE ++A+ + Sbjct: 199 VYPQLMQDFAEYAPVLQEAARATAGVLTFLPVPPFRQDTPLCCFSNVREEITAVALQVER 258 Query: 381 SLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 L + + + L V+ E I ++ AG L + + L + Sbjct: 259 LLRTGTPVSQIAVSVANLEELQPYVEREFRLRDIEPEVRAGFCLGAHPAGRMFSQLREFV 318 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM--DLKSLVLDR 495 ++ L+ +P ++ P+ + + L+ +R K S L++ L Sbjct: 319 RSHGTLKSVRALLLNPHIRWADPQGAQAVVQYGLQQACIRSWKQSGTYCNVWLQAFALHC 378 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 T++ H Q + L+ + + S + Sbjct: 379 ERTEQERQHQQCAQRFFLTLLRFARALVEARSFVRMQKAYGAFRAACLLPASAHTSGAEE 438 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + C + L++L + + + +L Sbjct: 439 EIASSAFASCSAGEDDAVMARCVCVLQELAALERRFAHV-----VPPDPYSFFVQQLAQQ 493 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 V + L I + F + ++ + FL +++ + Sbjct: 494 MYVPVRAGVG--LAIFPYRVAAAAPFLHHFVINVSHEASSVRYQRGTFLRADVRAAFGFE 551 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL------------------- 716 + + + ++ S++ + +R+ Sbjct: 552 DEDVTEA----FLSAYATAQTVYFSCSVQAFSGVQRPNRFFSNVHPPVSSTLTGRASQTP 607 Query: 717 -----------------------------QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 Q L G + + + + Sbjct: 608 SPAGIASETGGAVPQYPAVRYEEDALQAEQDLYAQGAPVPSSLYRTQQERLRKAASLIPA 667 Query: 748 T----------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 P S +++ P A + R+L + + Sbjct: 668 AGRSYIRDSFAQALPPLTAVLHARHFHHAAVKVSQTDLNLFFRCPAAWFLERVLDVAPLS 727 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ-------IIDSHFEKENLPP 850 + D G H ++ L + ++ + M++ I+ F + + Sbjct: 728 RRPRLVDPRVLGVFSHVVLERLYNRIACEDECFFSAHMERYRLWTQEAIEQVFSERAVRA 787 Query: 851 -----HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + + L+ + + + + G DRI Sbjct: 788 GPLVWALRAALSARIRHMVEFVLQFDAQRLDGWRVVRTEKAFEFTDTQCFYT--GLVDRI 845 Query: 906 DLLKSGF-VDITDYKTGDNPKKETAQ------KLIDPQLSLEAAALKAGSFSQIDCRKVA 958 + + DYKTG P +L D Q+ + L+ + V Sbjct: 846 SCSPDARSLAVLDYKTGALPALSDYTDCEKKGRLSDFQIPMYVYLLEQAGY------TVT 899 Query: 959 NLFYIRLKQKF 969 + F++ ++++ Sbjct: 900 HAFFLDVRKRD 910 >gi|308182529|ref|YP_003926656.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4] gi|308064714|gb|ADO06606.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4] Length = 778 Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 131/399 (32%), Gaps = 54/399 (13%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKVVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 NLHTEPIKDAYTLFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + P + + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYMKCFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLVALKKI-QAFYLKEKERFKAKIKILDLEKSFETIIQ--GVVF 648 Query: 899 TGFADRIDLLKSGFVDITDY----------------KTGDNPKKETAQKLIDPQLSLEAA 942 G DRID + + DY K+ + Q+++ A Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSEKQRKSLSPIEISQISTDY--QMAIYAC 706 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 ALK + + F+ L++ ++ + Sbjct: 707 ALKNLGYK-----EPIKAFFYDLRKGELLEEDELVLQAK 740 >gi|291276799|ref|YP_003516571.1| hypothetical protein HMU05710 [Helicobacter mustelae 12198] gi|290963993|emb|CBG39832.1| putative hypothetical protein [Helicobacter mustelae 12198] Length = 730 Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 123/406 (30%), Gaps = 55/406 (13%) Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + G LE+R ++FD +I+ NE + FL+ ++ L + T + Sbjct: 375 GGKIPVYGMLETRGMSFDAIIIVDFNEEKIFNFDDSDMFLNTKIRKSLGIPTLMDHKNLQ 434 Query: 685 AHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 H + + + T + +L ++ + +F ++ Sbjct: 435 KHYYYQLIKNAKEVDITYVKDDKPQALH---FLSSIVDVLPGEFDKSIFYFD-------- 483 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + F Q +S S ++ + R I L ++D Sbjct: 484 -------KKPSYVEDDFFGEIPQDFVFSASSLRTFFACKRRFFLRYIKGLR--DVSQRDF 534 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 L H + + N ++ + +L + L K Sbjct: 535 SAQ---NLLHESLEKAYNAHPNDVIGA-----QKEFYHLVHQASLQDPMQKFASELMVKN 586 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGD 922 SF + E + + I + +G DR+D + + DYK G Sbjct: 587 MDSFWKQEREHYQKYRFYAAEYGFEAEI--LKHKFSGKIDRVDYDEESASYVVVDYKFGK 644 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + + D QL L A AL++ + V ++ + KI Sbjct: 645 KIHQSINENTSDFQLILYAMALESEG------KSVEACLVYDIRGEKKISVN-------- 690 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E+ + L E + L +GE F + K E+ L Sbjct: 691 ----LEEGREILQERIKEL-DGEMEFT----QNFKECHYCEFKMLC 727 >gi|308184160|ref|YP_003928293.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180] gi|308060080|gb|ADO01976.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180] Length = 778 Score = 135 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 58/399 (14%), Positives = 131/399 (32%), Gaps = 54/399 (13%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDEVVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E + AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASSMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 DLHTEPIKDAYTLFAPTPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + + P + + + G+L H ++ E + +KN + + ++ Sbjct: 540 TCKRRFYYHYMKRFKESPKDE---NNSAVGSLLHELLKEAYE--KDKNPYVLEERLIWLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNIPAKMAIESIGIHL 898 + +EN+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TRENITPKERLDTLIALKKI-QAFYTKEKERFNTKIKILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KTGD----NPKKETAQKLIDPQLSLEAA 942 G DRID + + DY KT + Q+++ A Sbjct: 649 KGRIDRIDKTADNEIILLDYKFKNDLKLDNMSKTQREGLSPIEIAQISTDY--QMTIYAC 706 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 ALK + F+ L++ ++ + Sbjct: 707 ALKNLGYKG-----PIKAFFYDLRKGELLEEDELVLQAK 740 >gi|153953621|ref|YP_001394386.1| hypothetical protein CKL_0996 [Clostridium kluyveri DSM 555] gi|219854243|ref|YP_002471365.1| hypothetical protein CKR_0900 [Clostridium kluyveri NBRC 12016] gi|251764558|sp|B9E0C6|ADDB_CLOK1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|146346502|gb|EDK33038.1| AddB [Clostridium kluyveri DSM 555] gi|219567967|dbj|BAH05951.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1150 Score = 135 bits (338), Expect = 6e-29, Method: Composition-based stats. Identities = 107/936 (11%), Positives = 252/936 (26%), Gaps = 129/936 (13%) Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213 DII + E L + + + + + RL + I Sbjct: 124 DIIGEFKKYNISPEFLKENLDSIENKSLKNKLEDIGMLFLEFQNRLSKNYIDLEDTLHIL 183 Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 + + + + I + P ++ + + +D + + Sbjct: 184 CEKL--DKSIIFKNSEVWIDEFSTFTPQEYSIIEKIMCSAYRVNITLCMDALGEYSERES 241 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 I + + L I ++ ++ S + Sbjct: 242 IDLFLPIKITER---------------NILQIAEKNNII------YQKPVNLRCSPCYRF 280 Query: 334 PDTSDMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKK 388 +++ +++ P N +K D+ + +A N+ E IA + + + K Sbjct: 281 KNSTALQHLQHSLFSYPYKNYEKSTEDINIFKALNKYTEIDYIARDIVKACRDKNLRFKD 340 Query: 389 SALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 A++T D + + ++ I I + ++ S + + K + ++ Sbjct: 341 MAVVTGDLDEYENLIKAVFNQYDIPYFIDKKREIIHNQIVILIISAVEILAKNWSYESVF 400 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 +K L F + + + R ++ + + + + Sbjct: 401 RYLKTGLLDLEFDDIDILENYVLANGIRGRQWLDTKPWSFKINYGNFKEDDSEEEQEYLN 460 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + + ++ +E + L + I + N C +L + Sbjct: 461 KINCIRDKVREPILKLSNDIKGKKKGRHICEELYNFLCELKIPEKVEELIIEFRNT---- 516 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 R + + + + +I++ + + + + Sbjct: 517 -DRLDKANEYSQIWDIVVDVLDQIVDVLGEQSFGMEIFNEALEIGFSQYEIGVIPPALDQ 575 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLK----TAEKY 680 + + + N L + G+N+G++P + + + +L L+ T + Sbjct: 576 VLVSNITRIKSYNISALYIAGVNDGIFPVTISPEGIFTDQDRDELKQNGLEIAPNTRSRA 635 Query: 681 IGQAAHDFEMA-NGTRHLIYTRSLRENNIPT------------------IASRWLQRLLV 721 + + ++L T S+ + S L Sbjct: 636 FEEQFLIYATLTIVDKYLTLTYSMSDEEGKAKRPSVVISMIKKIFPKLQEKSNLLDASGY 695 Query: 722 LGGTDFFDNLKKRGQCYLD----------------------------WTRKLDYTTKQ-- 751 GG + ++ K + W ++LD Sbjct: 696 EGGIEAVNSPKVTFNMLISNIRRNLGHRENINSLWIDVYRWYREHEIWNKRLDTVLGAFY 755 Query: 752 ----PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 L + S S +++ P+ + + LK+ D Sbjct: 756 YNNEIKISDLVKIRRLYGKHLNMSVSRLEKFAQCPFGYFVQYGLKVKDRKM--YSLSAPD 813 Query: 808 RGTLFHNIITEL-------IKKRINKNTPEINHLMKQIIDSHFEKE----NLPPHIDIIW 856 G+ H I+ N + + ++D+ Sbjct: 814 LGSFMHGILERFSIGLKQKSLTWENVDERCCEENINDLVDNVLYDNPNSILNSSKKYKHV 873 Query: 857 RHLFHKISHS--FLEHEEKIQSSIEKIFVNI---------PAKMAIESIG-IHLTGFADR 904 K +L + + + P + ++S + LTG DR Sbjct: 874 TDKLKKTLTRSVWLIAQHMKKGRFIPRAYELVFGEIGDFPPISIELDSGEKVSLTGKVDR 933 Query: 905 IDLLKSG---FVDITDYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVAN 959 +D K ++ I DYK+G K QL + A L A Sbjct: 934 VDTAKEDIITYIRIVDYKSGTREFKLSDVYYGFQLQLLIYLDAILTEFDKMTKGKSIPAG 993 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 L Y +L D I K+ E+ ++ K+L Sbjct: 994 LLYFKL-----EDPIVRTKENIPDHEIEDRITKSLK 1024 >gi|227505536|ref|ZP_03935585.1| helicase [Corynebacterium striatum ATCC 6940] gi|227197833|gb|EEI77881.1| helicase [Corynebacterium striatum ATCC 6940] Length = 1021 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 119/961 (12%), Positives = 264/961 (27%), Gaps = 69/961 (7%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 ++ LV+ + + + + +K + LR E + + +++S+ + Sbjct: 9 VSSLLVDVVLNKLSSGADPSGILVVSTSKESGSILRRELAQHLEDYAAQASMVRSVHSLA 68 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 L ++ ++ + L+ + S + Sbjct: 69 FALLRTISEEEIRL---ITGAEQDAVIRELLEGQAEENRG--------SWPAEVRPAMTF 117 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + A+ L D++ K +L L + W A +FL + T++L L++ Sbjct: 118 VGFARQLRDLLLRAIERGKGPHELMELGQKYQQPMWTAAGEFLLEYER--TQQLAGLHSY 175 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 S ++ +E + K II+ + P + +L+ ++ +V D Sbjct: 176 SAAELVNEVL-LHSELVEKHPWHTIIVDDAQLLDPTSGKLIEGLSRSTELTVV--AGDPD 232 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + + + + L +V + R Sbjct: 233 QAVFAFRGANSEFLTSFPAEHELVLEEPRR--RPAPACISIVDSRSTLRDVVADAVRRRH 290 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + + +R+T + + V + D E + L +L Sbjct: 291 LEDEVPWREIAVIVRSTGDIGQVRRTLLAAGVPVHINPTDVILAEQRLVKSILL-ALRAL 349 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + + + + V + + L +LL +L DF Sbjct: 350 DHELSNTELEELVTGPVGGADPVTLRRLIRGLRRWAPQSRGIDSLRALLE--GELPDFSG 407 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + T + + + RA ++ ++ L + + Sbjct: 408 LLTEREQTILERIRSILDAGRAALRAQVSIEETLWEVWNATGLDARLQAAALRGGATGSQ 467 Query: 506 PHWQSRLSEEDKELAVLLVDHILQC-ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + A + + + + + G V + Sbjct: 468 ADRDLDAMMSLFDAAGDYSERRPGASLEAFLRHIEEQELPTGVRDRRTAIPQAVEVITAH 527 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + + ETGS + ID++ + I T + Sbjct: 528 GAVGREW----DTVVIAGAQEGTWPSLGETGSV--FGQEDLIDLLDKGIAPGTPVSHVAS 581 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L++ ++ + F+ S + +A Sbjct: 582 RLREERRLFHVATTRHRRRLLIAAVDAPEAAVPEEPSRFVGEFALSGSVDVPGAQTRREA 641 Query: 685 AHDFEMANGTRHLIY---------TRSLRENNIP-----TIASRWLQRLLVLGGTDFFDN 730 A R L R+ RE + ++ S Q V+ + Sbjct: 642 TKRLRAAQLPRELGLAVPEPAPVSVRAEREIDPLDVAVLSVPSFVAQLRRVVVSASSGEA 701 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDP 782 + + L K P S S ++ L+N P Sbjct: 702 ERSQAARQLARLAKAGVPGAHPESWWAARSVATDVLADMEEAVAVGRVSPSRVEALLNCP 761 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 + L + + P RGT+ H + L + + K+++ Sbjct: 762 LSAI------LGNLAEEESTPMHLIRGTMAHAYLEALGRGIEPELG-------KKMVMEA 808 Query: 843 FEKENLPPHIDIIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 F P + F ++ + +SS E I V +P + + GI + G+ Sbjct: 809 FASIVDGPGWKMRSDMAAFERLIDRTHQWAMNSESSFELIGVEVPVSVEV-LPGITVAGY 867 Query: 902 ADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DR+ + D KTG + A++ +PQL AL+ G + A Sbjct: 868 MDRLVKAGD-DYMVVDLKTGNSAVTAKQAKE--NPQLMTYQLALERGELVGVVDADDAEA 924 Query: 961 F 961 Sbjct: 925 G 925 >gi|187477415|ref|YP_785439.1| hypothetical protein BAV0912 [Bordetella avium 197N] gi|115422001|emb|CAJ48523.1| conserved hypothetical protein [Bordetella avium 197N] Length = 883 Score = 134 bits (337), Expect = 7e-29, Method: Composition-based stats. Identities = 73/626 (11%), Positives = 171/626 (27%), Gaps = 46/626 (7%) Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 L A+ A+ V +P + A + ++ Sbjct: 268 RVLDQALQASGGQDALLFNVAVGRPLIEWPALRAALAWLQALADMAAAGSVAVPVLGAAL 327 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC---ITPLVTYKTNKNSTCGN 547 L + + R + C T Sbjct: 328 LAGHCAGDRSERHAAIDARWRRQGRISLNEEAWKQALQYCPRLAQAWEAAMTVWRLGPAR 387 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 W L+ + R + ++ ++ G L + + + Sbjct: 388 APCDIWMPRIREALKALGFPGERTVDSVGYQLMGALGELLGDFAALAPAVGSLDGRGAVR 447 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 +++ + +P+ + + L +LG LE+ ++D + + GL + V P + NP L + Sbjct: 448 LLSSAARAGSFQPQRDPQARLDVLGLLEAEGGSWDGVWMLGLTDEVLPASPKPNPLLPLM 507 Query: 668 MQSDLNLK--TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 + T E+ A + + +I + + E S + Sbjct: 508 VLRQAGAPRATPEREREWAENIYAALRTCAPEMIVSCAEHEGERELRPSPLI------AA 561 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + W +++ + P T + +P Sbjct: 562 APLLETARLGADAQTGWPQQVLEDEQGPPLDPASLS--------TGGLDVLDTQARNPQW 613 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDS 841 + R L + + + + RG H + + ++ + + ++ +++ Sbjct: 614 AFVRHRLGARELAPYAQAAAQNVRGQFLHRALELAWRMLPDQESLHLSMSEGRLQTLLNE 673 Query: 842 HFEKENL------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++ P + + + ++ E + + A+ Sbjct: 674 AVQEAADQELAAYAPALRALECARAAGVLARWMALEAQRLPFAVG---ELEAEHTWRRGA 730 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTG----DNPKKETAQKLIDPQLSLEAAALKAGS--- 948 + L DR+D L G I DYKTG + + I+ QL A+ L G+ Sbjct: 731 LALKLRLDRMDRLADGRAVILDYKTGSAQARPEADWSRARPINLQLPFYASVLGEGAPEV 790 Query: 949 ----FSQIDCRKVANLFYIRLKQKFKIDCITNDKKK---YSADELSEKSLKNLIEIVTLL 1001 +QI R V + + + + ++ + + Sbjct: 791 AGLILAQIHARHVGAQGLCAEDLGIEGLRVAAESEAFGGRDWAQILAGWRAAIESLADEY 850 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHL 1027 G ++ R K + L Sbjct: 851 ARGHAANVAWGRDDLKYCDAMPFLRL 876 >gi|300867523|ref|ZP_07112174.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506] gi|300334517|emb|CBN57344.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506] Length = 983 Score = 134 bits (337), Expect = 8e-29, Method: Composition-based stats. Identities = 94/1028 (9%), Positives = 258/1028 (25%), Gaps = 153/1028 (14%) Query: 50 YVPTKRAIQEL----RSEFIEITGKKSTILPIIK-SLGDVVEEKFTADLLLSYNLNPPVS 104 + T+RA +EL R +I +++ + ++ L + Sbjct: 54 FTFTERASRELKTRIRGHLEDINPDDASLGDMYVGTIHSFC-----------LQLLKEID 102 Query: 105 NIQRLLELARLILIWRNKLP-----DIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 R E+ + + + L I +++I Sbjct: 103 TQYRNFEVMDDVRQAALITANYHYYEDSGKGIGLNQLRQQIRGEGYWDALDWFTTTLNVI 162 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + E+L E + + + + L Sbjct: 163 HLKRIDPENLQ---TEHLSGAVQRYKQLAQERPNCFFDFNTIIG-----ELLSRLSEPAL 214 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 ++ +I+ P L+ +++ V D W K+ Sbjct: 215 LEQVRSKFRYLIVDEYQDVDPRQEELIRILSDGGTRMSVCVVGDDDQAIYGWRGTDIKNI 274 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 +P + +L++ V+ R + ++ + Sbjct: 275 LTFEQR-----YPNVTRIELINNFRSTHAIVE-----IANKAVRQLPVNCRLNKAMVARY 324 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------------MSLDENK 386 ++ + D+ E ++ EA +A ++ + Sbjct: 325 WQSEQDVVVLRERMAELGDIRRQEFPSDEAEAAWVAERIKYLRGTVIEEKDGTERAIDYA 384 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSL-LNAIFKLNDFMA 445 + L+ + R+ + L GI + L + ++ + + + Sbjct: 385 DMAILLRSVRSSGQVFVDALREQGIPFVVKGTRGLFSHDEVLLVQAAFCQLAQREFSYTD 444 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + +++ L R + D + + + Sbjct: 445 MTGKFHS--FTVNKTREFVRDTVRRLRD---RQQMSQADATSFLEWIAKQREKLNRQSLP 499 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + +S D + + L + + L +T ++V Sbjct: 500 KEERDGISRRIYPQ-----DIFQEMLEELGASAETQPWSDDILYNLGRFSHLLTQFESVK 554 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + G + G + Sbjct: 555 QWIEPRDLTPLCLFLGGWAAGKTDD----GGVDEITTPNA-------------------- 590 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + I+ ++ L + + + ++ +P + + + + + Sbjct: 591 --VQIMTIHAAKGLEWPVVFVPRVSSSNFPSSRRNQGPETFLTSQEFDRSEYAGGDAGER 648 Query: 686 HDFEMAN--GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + +A + L + R P+ + + V G Sbjct: 649 RLWYVALTRCRKFLHISSQDRHRKKPSDFYKEITHDYVKG-------------------- 688 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 +R P P+ + ++S++ P+ R ++ Sbjct: 689 ---DGNDPTFRRRDIPIAPVNTELLPTTYSDLNYYWKCPFDYKLRCLMGFGPSVKQDFG- 744 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 G HNI+ E+ ++ + + ++ +++ F ++ Sbjct: 745 ----YGQQVHNILAEIHQRIAQNSEAHLSITEDFLENLVERQFNLRYTRGKPLEALKNAA 800 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-------V 913 + + + P + G ++G D + ++ SG V Sbjct: 801 KRSIIRYWQFYRDRAELAF--EAEKPFEYVDRQSGALISGTIDLLQIVDSGGQQEYPIPV 858 Query: 914 DITDYKTGD----NPKKETAQKLIDPQLSLEAAALKA--------GSFSQIDCRKVANLF 961 + D+K+ + + QL L AAA++ G+ + + + Sbjct: 859 CVVDFKSQKWEKDPQSYRERRNDVTRQLRLYAAAVRHALGYDPDNGADAHFLAPEPPDSE 918 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI-SHLRLSEKSNI 1020 + L + + DE + + + + V +++G P S Sbjct: 919 LVNLGVEERFTVDVG-------DEYQNQVREEVRQAVEGIKSGLFPLTGSQSDPPR--CS 969 Query: 1021 QSEYDHLA 1028 + ++ + Sbjct: 970 KCDFKKIC 977 >gi|257068317|ref|YP_003154572.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] gi|256559135|gb|ACU84982.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] Length = 1058 Score = 134 bits (337), Expect = 8e-29, Method: Composition-based stats. Identities = 125/1018 (12%), Positives = 264/1018 (25%), Gaps = 129/1018 (12%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSN 105 + P + A LR ++ + + AD L V+ Sbjct: 73 TLLLAPRRTAAGRLRDALAVHGAGEA----RAMTPPALGHALVRADALRRGLGEPTLVTG 128 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++ LA LI L + L D+I Sbjct: 129 AEQDALLAELIAQ------------REAWHLEVDPGARTLPGFRTELRDLITRAAELGLT 176 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWT----ERLVELNASSPVGYQIALMRAEAEH 221 DL L +E+ W AA L+ L +R A+ Sbjct: 177 PADLEELGHERGRPAWADAAAILRDYLGVLDLEASAALDAGPRLDSGALVRRAVRLLADP 236 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 +++ + A L++ +A +V D + T Sbjct: 237 STPAPFRAVVVDDAQDLTAAGIDLVAALAAAGARVLVCACPDTAVDTFRGALPDAADRLH 296 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 T LD L + + GR + Sbjct: 297 TLLPRPVEAM----------VLDGAHAQTAPLTAAVDALRGRLPLAGA------------ 334 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNL 398 + + A + +EA I ALR A++ Sbjct: 335 ---PAESRRPRAPRPGALVTLRAQDPLDEARLIGSALRDLHHREGVQYDDMAVVCRSGAA 391 Query: 399 ARRVKLELTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + L+R G+ + + PL + L +L D L L Sbjct: 392 VADLADLLSRTGLPVRVPRRPQPLREVPAIADLLRILEIGLAPQDAPLDPRLATELLRGP 451 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 L + L+ + L+ + ++ + Sbjct: 452 FGDADTLRLRRIRRLLLGAHRAAEPDSETPSEQLLARALVDEEVPGLPAPEARDRAAAPI 511 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 ++ + + + + S D L Sbjct: 512 HRVREMIRAVREHPEA-----DAQQVLWHAWNASGLAGGWRRAALGSAGDVDGARSRLAA 566 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTLES 636 L + T A A+E ++ I + + +T+ P L +L + Sbjct: 567 SRLDALLELFAAAERLTDRRPGAGALELVEQIRGQAVVEDTLAPAAAARGRLAVLTPAQL 626 Query: 637 RLLNFDTLILGGLNEGVWP-----------------KNTAKNPFLSRVMQSDLNLKTAEK 679 + DT++L L EG WP + L ++ L+ + Sbjct: 627 AGEHRDTVVLARLQEGAWPDLRLRSTLFGAAELQLRAGARRGAELPIEPEAVRALQREQV 686 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + R + ++++ A + + L++ Sbjct: 687 IADELRLAVSALARARRRVLVTAVQDEQNEPSALFEAFEGMAADPWIDLETLRRDPGPAP 746 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQ--------------------------------- 766 D R + ++ + P+ Sbjct: 747 DARRLVAALRRRLRGEDPQTVRDAALALDALGRAGAPGTDPGRWYHQEPSSTAPLHEDDT 806 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P S S +++ ++ P + R GT H+ + ++ + Sbjct: 807 PIRLSPSALERAVDCPQSWLMERAGGTRAGGP------AQLIGTALHH-LAQVHPRGPAD 859 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ + ++ + E + ++ + L +S+ E + V P Sbjct: 860 AEEDLLAELHTLLRAVPGTETWSGRRRVRRAEDAARLLAAHL------RSAGEPLAVEAP 913 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 ++ + + L G DRI+ +G + + D KTG K A+ D QL+ AA++ Sbjct: 914 FEVEL--GRVQLRGSIDRIEGDPTG-LHVVDLKTGRA-AKSAAKAEEDLQLAAYQAAVRE 969 Query: 947 GSFSQI----DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 G+ ++ ++ + + K + A++ + +L++ V+ Sbjct: 970 GALTEQLGPDAPERLIGAQLVYVGTGGKKAAVRTQTALSRAEDPA--WFDDLVQQVSR 1025 >gi|315652080|ref|ZP_07905081.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485727|gb|EFU76108.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 1128 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 102/978 (10%), Positives = 250/978 (25%), Gaps = 134/978 (13%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + L L R+ K Sbjct: 66 SFNRLAYRIFEELDIENPEVLDELDKALILRRIANKVELKAWKKQFQKA----------- 114 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVE 201 N+ +I + + + N + + + + + + + Sbjct: 115 ----GFIDNIKSLISEFMQYDISDDFIKEQVNNSEVDSLLKIKLEDIYKLKTGFEDYIA- 169 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ + I+ G TG P R++S + + Sbjct: 170 -GKYFTNEQILDILNENIVNSELLRNSIILFDGYTGFTPIQNRIVSNLMKVADEVRF--- 225 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + S S S+ + ++ ++IKR L S + Sbjct: 226 -----SITLGRGVDPDSRLSESDLFFVSSKMILQINEMAKKVNIKRLPDINLNTGSVYRF 280 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 S + + K SD+ + N +E A + Sbjct: 281 KNSNDL-----------AFFEEHFLRYDGKKSKEVSDIEINYCMNPLDEIDFTANKILSL 329 Query: 382 LDENK---KKSALITAD-RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + + A+I D +++ + + I + + + + + + I Sbjct: 330 VKDKGYRYRDIAIIYGDLEDVSDALINRFHQLEIPYYLDEKMEVDNNELVEFINAFIAVI 389 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + + A+ ++ L +F L LE + + L Sbjct: 390 SENFSYDALNRFLRLGLLRFDKRLVSLLDNY-LLETGIKGYKRLHSEFTYLPRSFG--ED 446 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 K+ + + +I ++ L +N +I + Sbjct: 447 ELKDINEFKDFALSKLDTLYSAISKSKINIKDALSALREIFEKENIEEKLQNIKPELEA- 505 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + +E + SLF ++ E D++ + Sbjct: 506 ----------RNDFKRAREYEGIFDEVISLFDRLELVLEGESLTKKELSDLLYTGFEEIK 555 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL----- 672 + ++ + I +RL + L + G N+G P ++ + L Sbjct: 556 LGMIPDRVDRVVIGDLKRTRLGSIKALFVCGANDGSLPTVKESGGLINDREKRKLKSLGF 615 Query: 673 NLKTAEKYIGQA-AHDFEMANG--TRHLIYTRSLRENNIPTI---------ASRWLQRLL 720 NL + + L + + + ++ S ++ + Sbjct: 616 NLSDTVREDLYTGRFYLYQVLTKPSDKLFISFTGMDFEGKSLRQSILINMIKSIFVNIEI 675 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP----------------------- 757 + + + + RKL Sbjct: 676 KNRKEANIYSKFEAKEYLSENLRKLRAKEVIDEEFIRYIATFFDKEFIKRLISAAMYVYK 735 Query: 758 ------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 L S + ++ P+ + R L ++ +D GTL Sbjct: 736 DSKIGESAARELFGDELRVSVTRLENYNACPFEHFIRYGLGVEERQ--IHSFKASDIGTL 793 Query: 812 FHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLF 860 H+++ + + +++ + ++D + + Sbjct: 794 VHDMLEKCFRYAKSRDKKIAEMDESALFALVDEAVSENMASEKNSIFKESNKSKYQLEKI 853 Query: 861 HKI--SHSFLEHEEKIQSSIEKIFVNIPA--KMAIESIGIH--------LTGFADRID-- 906 ++ + ++ + E + +E++ I L G DR+D Sbjct: 854 VRMTKLTMLVLSKQLAAGNFEPKYFEKSFGESDNLEALNIELKNNAKMYLRGKIDRVDTY 913 Query: 907 LLKSGFVD-ITDYKTGDNPKKETAQKLI---DPQLSLEAAALKAGSFSQIDCRKVANLFY 962 + + + I DYKTG+ K QL + A+ + A FY Sbjct: 914 VDEDATLVKIIDYKTGNM--KWELDMPFYGRALQLVIYLDAVMEQLTKEGKEVLPAAFFY 971 Query: 963 IRLKQKFKIDCITNDKKK 980 + + F + Sbjct: 972 YHIDEPFLTRDEAKKENA 989 >gi|269955586|ref|YP_003325375.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] gi|269304267|gb|ACZ29817.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] Length = 1197 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 97/808 (12%), Positives = 206/808 (25%), Gaps = 90/808 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-V 103 + V + ++R LR + + ++ P++++ P V Sbjct: 69 SRVLVLGSSRRLAARLRDQVAAAS-GRTLGAPLVRTASSAAFAVLRTRAAALGEPTPTLV 127 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S ++ L LA L+ + P LP L + L D++ Sbjct: 128 SGPEQDLVLAELLAGHLEGEGAPL-----LLPDGLPSEALGLRGLRQELRDLLMRAAERG 182 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN---------ASSPVGYQIAL 214 + ++L L W +AA + RL + +A Sbjct: 183 IRPDELAQLGRTHARPEWSMAAQLYEEYLDVTALRLGTPDSGARFDPAVVVDEAAQSLAA 242 Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 E + + + +++ + ATARL+ + + GA ++ D + Sbjct: 243 WEEELPGVPRPSWDLVVVDDYQEATVATARLLHALRDS--GARLVLLADPDSAVQGFRGA 300 Query: 275 TEKSTNI-----------------------------------TSSNTTYSTHPQYSLAKL 299 T T+ T Q + + Sbjct: 301 TPGLVGRASAPPRSLGAFGAEEVVLGTVWRQTPELRDVTRVVTTRIPTVGGPFQRGASAV 360 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + D G+ Y + D D T + S V Sbjct: 361 VPDDGASDGDGVAHGDDGVVPYDDASSNVAGHDADDGDDGPGTTSPDGLAAAGGPAPSGV 420 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 A+ + +EA IA LR + +I + ++ +L + + + Sbjct: 421 AVAVLAGQAQEAAFIARELRAEHLLHGTPWERMVVIARSGDRLGALRRDLVAASVPVALL 480 Query: 417 A-GIPLSTTLHSSILTSLLNAIFK--LNDFMAIATLVKH---------PLAKFGFPEKYL 464 +PL + L + L A+ + P L Sbjct: 481 GSDVPLREEPAVAPLLAALRVSAGTAPGSLDAVLAELVGGDDTATSSDPDGLTAPEPYPL 540 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 A+ A L+ + L +D AV L Sbjct: 541 LDAETAAALLTSPVGGLDAVALRRLRRALRAEELAGGGGRSSDALLVELLDDPARAVTLP 600 Query: 525 DHILQCITPLVTYKTNKNSTCG---------NLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + + + + G ++ D T L + Sbjct: 601 NPVKRGAVTVARVLAAGRAAAGEPGATAQTVLWAVWDATGLAARWRDAALAGGPAGVRAD 660 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + L ++ A + ++ + +++ + + L Sbjct: 661 RDLDAVLALFRAAETYVDRMPGAPV-AAFVDYLSSQDLPADSLAASASGAHAVEALTPAG 719 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD-----------LNLKTAEKYIGQA 684 + +D ++ G+ +GVWP ++ L + L ++ + Sbjct: 720 AAGREWDVAVVAGVQDGVWPDLRLRDSLLGSQALVELLAGRSQDAHGLGPDARKQVLADE 779 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 F +A + S + ++ G + D + LD Sbjct: 780 LRAFAVAISRARRRLL-VTAVEDAEDAPSVFCDLVVPPGEDEERDPRRVEVAAPLDLRGV 838 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + P P+ A+ S Sbjct: 839 VATARATLLRAVAAPSLPVVAEAPPSSV 866 Score = 79.6 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 92/813 (11%), Positives = 200/813 (24%), Gaps = 67/813 (8%) Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + + +RAE + ++IA S + A R + + + L G Sbjct: 427 GQAQEAAFIARELRAEHLLHGTPWERMVVIARSGDRLGALRRDLVAAS----VPVALLGS 482 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + + S T LA+L+ D Sbjct: 483 DVPLREEP--AVAPLLAALRVSAGTAPGSLDAVLAELVGGDDTATSSDPDGLTAPEPYPL 540 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + L + + + + + +D L L Sbjct: 541 LDAETAAALLTSPVGGLDAVALRRLRRALRAEELAGGGGRSSD----------ALLVELL 590 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 D+ + L + A V L AG P +T + Sbjct: 591 DDPARAVTLPNPVKRGAVTVARVLAAGRAA----AGEPGATAQTVLWAVWDATGLAARWR 646 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 A+A A + + G + + L S L + + Sbjct: 647 DAALAGGPAGVRADRDLDAVLALFRAAETYVDRMPGAPVAAFVDYLSSQDLPADSLAASA 706 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + H L+ V + + ++S G+ ++ + Sbjct: 707 SGA-HAVEALTPAGAAGREWDVAVVAGVQDGVWPDLRLRDSLLGSQALVELLAGRSQDAH 765 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPK 621 + D +++ +S ++ + + + D++ + E P+ Sbjct: 766 GLGPDARKQVLADELRAFAVAISRARRRLLVTAVEDAEDAPSVFCDLVVPPGEDEERDPR 825 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L + + + + V + + + + L E Sbjct: 826 RVEVAAPLDLRGVVATARATLLRAVAAPSLPVVAEAPPSSVIDAALPVVAAALPVVEPVE 885 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 ++ T S + T ++ LL R + Sbjct: 886 -------TTHEQPGDVVSTGSTTGGHGSTTEAQTAAALLADLAAAGVPEADPRTWYGVAG 938 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + S S+++ + Sbjct: 939 ASS-------------DAPLWADDAVVPVSPSKVETVTTCALRWSFEAAGGTAADDQ--- 982 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 GTL H I L ++ E++ P + R Sbjct: 983 ---NQTLGTLVHAIAEALPTGSLSALKAELDRR-----WPQLALPPGWPARQL--RQRAE 1032 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 ++ + + + V + + L G DR++ G + D KTG Sbjct: 1033 QMIEHLATYLAD---AGSPLAVEAEFDVEVGRA--RLRGKVDRVEDAGDGAAIVADLKTG 1087 Query: 922 D-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 P + + PQL A++AG+ A L ++ + Sbjct: 1088 RKAPTVDQSVTH--PQLGAYQLAVEAGAIDGATRSAGARLVFV---GTDTKKPTMRVQPA 1142 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLR 1013 + + L+E E+ F +H Sbjct: 1143 LAPEPDGSSWASALVEGAADTMASER-FAAHPN 1174 >gi|269838113|ref|YP_003320341.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter thermophilus DSM 20745] gi|269787376|gb|ACZ39519.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter thermophilus DSM 20745] Length = 1066 Score = 134 bits (336), Expect = 1e-28, Method: Composition-based stats. Identities = 110/1078 (10%), Positives = 234/1078 (21%), Gaps = 171/1078 (15%) Query: 59 ELRSEFIEITGKKSTILPIIK----SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE--- 111 L E P++ +G + + NL L Sbjct: 17 ALGDELRRWKAVDPLAPPLLLVGDVLIGIYLRRRLARLAGGHVNLPVMTPGHLARLLGEP 76 Query: 112 --LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 LA ++ + A A+ L + + E Sbjct: 77 ALLAEGRTPLPAGGQHLLAEEIALGAGGYFAPVRQAPGFAQALDRLFRELREAGVDPEGF 136 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229 A L + ER + A + Sbjct: 137 RAAV--SQAEVNQEKCTALAHLYARYAER--RRGFYDGLDTYAAAD------PSRLDAPA 186 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 +++ G + RL+ + + LP A I ++ Sbjct: 187 VLVYGISQPSGLLRRLLERLMETLPVTVFLPRTVPEADRAHREMIDWLTSLGAGEEPAPE 246 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 P + + + + Sbjct: 247 PVPDR----------------------------------------EPTALDHLRATLFHP 266 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLEL 406 + V L+ A + E A A E + + + D V Sbjct: 267 AGGTEPDGTVRLVSAPDPAREVREAARACLAWAAEGIPFHEMAVVFRRDEPYRALVDEVF 326 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF-------GF 459 GI + + G PL+ L +LL A+ + Sbjct: 327 RETGIPVYLYGGRPLAEHPQGRRLLALLALAGSPLRRAAVMEFITETHLPDATAERYGPV 386 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 +V R S + ++ + ++ + + R E E Sbjct: 387 EPALWDALSREAGIVEGRDQWISRLSLLHQAKRRAVLGEEQEDPERIDERLRTELEAIER 446 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSIS-------DWTKLTVTCLQNVCLDEHRKL 572 + + + + + ++ + + L + + Sbjct: 447 LSQFIKDFADQLEARPEHASWQAHLDYLRDLAVTYVDRAEPLLDLLAPLARLDALVPQVS 506 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPKIEKS 625 + + L + + + N D + L + V Sbjct: 507 FVRFQRTVRRVLERADAGTVLGPDEVPPNGHFGRDGVAVLDVFSLRFLRLRAVAVLGLAE 566 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + ++ LL+ + + L P A + + + Sbjct: 567 RSFPAPPRQDALLLDRERVRLSAAGRWEIPLRAAGADPEPLLFALAVAAAGERLLLSYPR 626 Query: 686 -----------HDFEMANGT--------------RHLIYTRSLRENNIPTIA-------- 712 H F A ++TR Sbjct: 627 SGGDGRTILPSHFFRAAAEALTGRRVGVEDIDSLSRELFTRVPTNRFGAATPEEALTAGE 686 Query: 713 -SRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------RKLDYTTKQPHYKRPKPFPPLEA 765 R L LL G + L R+L Sbjct: 687 YDRTLLALLPQEGAECLARLHPPFARARAAWEARWRGRELTTYDGVLGEAAAAAVARRAG 746 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELIKKR 823 R S S ++ P+ + +L+L+ + + + +RG L H+++ + + Sbjct: 747 LRRAISPSRLETYATCPFRFFLSYLLRLEPVEEPDLLERIESLERGALVHDVLQRFLTEC 806 Query: 824 INKNTP------EINHLMKQIIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHE---- 871 + P ++ I + ++W+ I + Sbjct: 807 GANDPPSRVRREAHLARLRAIAEEECADREQRGLVGYPLLWQVDRRAILEDLITWYDREV 866 Query: 872 EKIQSSIEKIFVNIPAK-------------------MAIESIGIHLTGFADRIDLLKSGF 912 + ++ + + + + + G DRID Sbjct: 867 AERDDALRPGAFELRFGPKWTHDREDSPLSTDDPVPLQADGLTLRFQGRIDRIDWSPDRS 926 Query: 913 -VDITDYKTGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 + DYKTG P K + QL + A + Y + ++ Sbjct: 927 AFRVVDYKTGKCPGHHKDDRLAGGRALQLPIYLLAASHVLGI---PWERGEAEYFYVTRR 983 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLRLSEKSNIQSEY 1024 + + + +V L G F S + +Y Sbjct: 984 GEFKRVRFSGAT------LRDRWEEFTALVQGLAEGIAAGRFHPVPGPSREHCTYCDY 1035 >gi|218670460|ref|ZP_03520131.1| hypothetical protein RetlG_01777 [Rhizobium etli GR56] Length = 197 Score = 134 bits (336), Expect = 1e-28, Method: Composition-based stats. Identities = 109/194 (56%), Positives = 139/194 (71%) Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 FI GTLE+RL + DTLILGGLNEG WP +A NPF+ R+M++++ L+ E+ IGQ AHDF Sbjct: 2 FIFGTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDF 61 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 EMANGT HLIY+R+LR+ + PT+ASRWLQRLL LGG F LK RG +L W +D Sbjct: 62 EMANGTCHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAELKGRGTRFLQWAGLIDRG 121 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 Q +RP P PPL QP++YSFSE+ +L DPYA+YARRIL+LD + F +DP +R Sbjct: 122 ESQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRILRLDPVDAFNRDPGAAER 181 Query: 809 GTLFHNIITELIKK 822 GTL+H II I+ Sbjct: 182 GTLYHTIIDRFIRA 195 >gi|33600422|ref|NP_887982.1| hypothetical protein BB1436 [Bordetella bronchiseptica RB50] gi|33568021|emb|CAE31934.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 886 Score = 134 bits (336), Expect = 1e-28, Method: Composition-based stats. Identities = 64/550 (11%), Positives = 164/550 (29%), Gaps = 44/550 (8%) Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + + D + + + + + + + + W Sbjct: 343 AALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDA---WAPRL 399 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L + R L ++ ++ G L + + + + ++ + Sbjct: 400 KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGS 459 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-- 675 +P+ + S+ L +LG LE+ +D + + GL + V P + NP L + + Sbjct: 460 FQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAPRA 519 Query: 676 TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 T E+ A F +I + + + S + R Sbjct: 520 TPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIAR--------------AA 565 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + +Q + P + + +P + R L Sbjct: 566 PADWQPGADAQAAVLEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGR 625 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN---- 847 + + + RG H + + + ++ + +++ + Sbjct: 626 AMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTEL 685 Query: 848 --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 P + + + ++ + E + Q I + + + + L DR+ Sbjct: 686 AGYPAALRELECARAAAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVRLDRM 742 Query: 906 DLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 D L G I DYKTG P + ++ QL A+ L G+ +++ +A + Sbjct: 743 DRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIH 802 Query: 962 YIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFISHLR 1013 ++ + + + + + L+ V +L + + +++ Sbjct: 803 ARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVA 862 Query: 1014 LSEKSNIQSE 1023 L + + Sbjct: 863 LRQDDLKFCD 872 >gi|326692733|ref|ZP_08229738.1| ATP-dependent nuclease, subunit B [Leuconostoc argentinum KCTC 3773] Length = 1178 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 103/955 (10%), Positives = 240/955 (25%), Gaps = 142/955 (14%) Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL------KNEKYG 178 DI+++ P+ P+ L + + +DL + Sbjct: 107 DILREYAPQLPIF--ARMQAKPGFIAALVTQLVELRASRITPQDLLQILNDTTDDATFLR 164 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 L I + + + +P+ L A+H G G Sbjct: 165 QTLAAKLRDLAIVADAL-AVKMGTDRMTPLEVLPFLATQLAQH--PLENVAFYFEGFNGF 221 Query: 239 IPATARLMST-VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 A +++ V +P +L D + + T Q Sbjct: 222 TSAEWQVVQQLVQRYPVTMALLGDGDQLGRQQPGDVFFKPMTTAQELMRLAKQAQQPV-- 279 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 + R++ + L + + + P Sbjct: 280 -----------------RLEQPQTRRTLSQTSEQLLTAWTHLGEYRPYQADQP-----AP 317 Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD-RNLARRVKLELTRFGIN 412 D+++ A+N E + +R L D + + ++ D + + + + Sbjct: 318 DLSVFAAENTIVEIQEVGRRIRRLLLADPDLHLRDILILARDLTPYTDHIPEVMAQLELP 377 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYLSRA 467 + ++ +L +LL + + + ++K L + E Sbjct: 378 YFLDTDQKMANHPLVELLLNLLMPTSERLQYQNVMAILKTSLLRPFQDQALVPEAEFFDV 437 Query: 468 KNALELVALRGNKNSYDIMDLKS--LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV- 524 + + +L + + + + E + Sbjct: 438 VSYFDNYLYANKPFEARWRNLDQPFELFTMTDEVSEDDVTLETEDQQINRRIETLRRFIL 497 Query: 525 ---DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 D + + T + L T + E Sbjct: 498 TAFDALQESFDHAKTMREAATGLVMWLQKYHVTDAILAQRDQYLAAGDLARSRQGS-EVW 556 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ +++ + ++ I+T G L I + + Sbjct: 557 QLFTATLDELVAIDGDAVFDLAQFKAILTAGFAGAKFSGIPNHLDQLTISEAGIVQSNRY 616 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQ------------SDLNLKTAEKYIGQAAHDFE 689 L G P ++ + S TA++ + + F Sbjct: 617 RHLFFIGGTRTNLPAQAKTTALINDAERLIVQPALQAGEQSKYLQNTAQQQMAEENLLFY 676 Query: 690 MANGTRH--LIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------- 739 A + + + + + S + QRL+ T + Sbjct: 677 GALSSANTSVTLSYPVLDSAGKIADMSPFYQRLVSTFQTPVDKITRVPADSAALLKNYTS 736 Query: 740 -------------------------------DWTRKLDYTTKQP------HYKRPKPFPP 762 +L+ P RP+ Sbjct: 737 TPRATLSELVKLMPTYQQSSAFKALQNAISVTQQDRLERVLSAPNYRNQTEILRPEFVQS 796 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 L Q S S+++ N+P A + + L+L + + GTL+H ++ ++I+ Sbjct: 797 LFGQQLNVSISQLESYYNNPLAYFLQYGLRLKER--TTNELNVAQTGTLYHAVLEQVIRA 854 Query: 823 RINK---NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 I + + ++ E P ++ + + L Sbjct: 855 LIQRQVSLRDVTTDELLDLVSQAMTTELSLPVYQLLATNGKMRAVRDHLAKISRQLMLNL 914 Query: 870 HEEKIQSSIEKIFVNIPAKMAIES-----------IGIHLTGFADRIDL-LKSGFV-DIT 916 + + V ++ I + G DR+D +G I Sbjct: 915 QQAARANGSYPQAVEQLFGFPVKGALPALEFSGRRGPIKVRGKIDRLDRQDPNGVFGTII 974 Query: 917 DYKT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 DYK+ G A + QL A + + + + F+ ++ + + Sbjct: 975 DYKSNGKQFDWAQAFDGLQMQLLTYWQAAQKNA-EALGVEAIGGAFFAKIAPERR 1028 >gi|222823416|ref|YP_002574990.1| hypothetical protein Cla_0381 [Campylobacter lari RM2100] gi|222538638|gb|ACM63739.1| conserved hypothetical protein [Campylobacter lari RM2100] Length = 794 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 76/456 (16%), Positives = 141/456 (30%), Gaps = 56/456 (12%) Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 EE + + I E + + + +++ IDG + + ++G LESR Sbjct: 376 EELVIKIKEELAFIKELVRAHELSFCQILELFFMQIDGIKLSSVG--GGEVTVMGLLESR 433 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRH 696 L +D +I+ N+ PK + FL+ ++ L T + H + + Sbjct: 434 GLRYDGVIIVDFNDEFIPKRVSSELFLNNEIRKKAGLITHTQRENLQRHYYYTLMAKAKF 493 Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + I SR+L L ++ Y+ + ++ + Sbjct: 494 AGISYVEN---EEKIKSRFLDELEFFL----VEDKIYSDNAYIKYFQENECKFNLDPITH 546 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + + +FS LIN Y + +L L + + G+ H + Sbjct: 547 --IKAEHDYFKKALTFSRFHILINYGLDYYYKYVLGLKEPKILDNNLKANELGSFIHKAL 604 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 E + + N + + + K ID + L + F E + Sbjct: 605 EEYYNQNKSLNYFDYEKFINIV------KNLKDKQIDALNFALIQAMFKEFQMLENERFK 658 Query: 877 SI---EKIFVNIPAKMAIESIGIHLT--GFADRIDLLKSGFV--DITDYKTGDNPKKETA 929 EK + I G+ +T G DR+D + I DYK+G Sbjct: 659 QGYMVEKCEFEQKKEF-ISDNGVKITAFGRIDRLD---NNTYERLIIDYKSGKI-----D 709 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 +K QL+ L+ D + LK + D+K L + Sbjct: 710 EKTY--QLAFYVFLLE-----SKDMLANTKACFYDLKNMKIVYENCTDEKVQELKNLLNE 762 Query: 990 -SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + L + N + N S Y Sbjct: 763 LVKEPLEK---EFFN-----------QKNDNNYSPY 784 >gi|108562783|ref|YP_627099.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1] gi|107836556|gb|ABF84425.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1] Length = 777 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 138/426 (32%), Gaps = 48/426 (11%) Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + D + + L+N+ L + + + S + + +K ++ Sbjct: 319 LEDLQTSGDLSASPLLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSL 378 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + + + + ++ TLE+R + FD +++ NE P + F Sbjct: 379 KDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLF 438 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 L+ ++ LNL T H + ++ + + E + AS L L + Sbjct: 439 LNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEITLSYIESETSK---ASNMLLELDLH 495 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 D+ + ++S S + + Sbjct: 496 IEPIKDAYTFFAPSPLKDYQEEEIKAAIPKD--------------FSFSASSLNAFLTCK 541 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 Y + + P + + G+L H ++ E + +KN + + +++ Sbjct: 542 CRFYYHYMKRFKESPKDE---SNSAVGSLLHELLKEAYE--KDKNPYALEERLIWLLE-- 594 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGF 901 ++N+ P + KI +F E++ + I+ + + + I+ G+ G Sbjct: 595 -TRKNITPKERLDTLITLKKI-QAFYLKEKERFKAKIKILDLEKSFETTIQ--GVAFKGR 650 Query: 902 ADRIDLLKSGFVDITDY----------------KTGDNPKKETAQKLIDPQLSLEAAALK 945 DRID + + DY K+ + Q+++ A ALK Sbjct: 651 IDRIDKTADNEIILLDYKFKNDLKLDNMSEKQRKSLSPIEIAQISTDY--QMAIYAHALK 708 Query: 946 AGSFSQ 951 + Sbjct: 709 NLGYKG 714 >gi|307637050|gb|ADN79500.1| hypothetical protein hp908_0371 [Helicobacter pylori 908] gi|325995642|gb|ADZ51047.1| hypothetical protein hp2018_0364 [Helicobacter pylori 2018] gi|325997238|gb|ADZ49446.1| hypothetical protein hp2017_0362 [Helicobacter pylori 2017] Length = 778 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 132/397 (33%), Gaps = 50/397 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ + + E AS L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVALSYIESETLK---ASNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + ++S S + + Sbjct: 494 DLHIEPIKDAYTLFETSPLKDYQEEEIKAAIPK--------------NFSFSASSLNAFL 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y + + P + + G+L H ++ E + +K + + Q++ Sbjct: 540 TCKRRFYYHYMKRFKETPKDE---SNSAVGSLLHELLKEAYE--KDKTPHALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHL 898 + +EN+ + KI +F E++ + I + + + I+ G+ Sbjct: 595 E---TRENVTLKERLDTLVALKKI-QAFYLKEKERFNAEITILDLEKSFETIIQ--GVIF 648 Query: 899 TGFADRIDLLKSGFVDITDY------------KT--GDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DY KT G E AQ D Q+++ A AL Sbjct: 649 KGHIDRIDKTTDNKIILLDYKFKSDLKLDNMSKTQRGGLSPIEIAQISTDYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 K + + F+ L++ ++ + Sbjct: 709 KNLGYK-----EPIKAFFYDLRKGELLEEDELILQAK 740 >gi|289555475|ref|ZP_06444685.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289440107|gb|EFD22600.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] Length = 656 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 68/605 (11%), Positives = 153/605 (25%), Gaps = 93/605 (15%) Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 L R LV + R+ A Sbjct: 65 LRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGS 124 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 L P +++ S + + ++ + +L ++ Sbjct: 125 LGGQDP-------RHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDH 177 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + A+ ++ +T L + + +L + +D +++ Sbjct: 178 YV-----SRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIA 232 Query: 648 GLNEGVWPKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 GL +G+WP + L ++ L E+ + A Sbjct: 233 GLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLV 292 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + + + + + S + + + L + Sbjct: 293 TAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVC 352 Query: 754 YKRPKPFPPLEAQP--------------------------------------RTYSFSEI 775 T + S + Sbjct: 353 APACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTL 412 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + L + P A R + + G++ H + E ++ ++ + Sbjct: 413 QALNDCPLRWLAERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAEL 461 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + + H + + +F++ + +S + ++ V + A+E Sbjct: 462 DR-VWGHLPFGAQWYSAN--ELARHRAMIQAFVQWRAQSRSELTEVGVEVDIDGALEDGS 518 Query: 896 -----IHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 I L G ADR++ +G + I D KTG P + + QL++ A+ G Sbjct: 519 GQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVR 577 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--F 1008 D A L Y+ + D L+ + +V L F Sbjct: 578 AGDEPGGARLVYVGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQF 630 Query: 1009 ISHLR 1013 I+ Sbjct: 631 IARRN 635 >gi|33595891|ref|NP_883534.1| hypothetical protein BPP1219 [Bordetella parapertussis 12822] gi|33565970|emb|CAE36521.1| conserved hypothetical protein [Bordetella parapertussis] Length = 886 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 64/550 (11%), Positives = 163/550 (29%), Gaps = 44/550 (8%) Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + + D + + + + + + + + W Sbjct: 343 AALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDA---WAPRL 399 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L + R L ++ ++ G L + + + + ++ + Sbjct: 400 KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGS 459 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK-- 675 +P+ + S+ L +LG LE+ +D + + GL V P + NP L + + Sbjct: 460 FQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTGDVLPASPKPNPLLPLAVLRQVGAPRA 519 Query: 676 TAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 T E+ A F +I + + + S + R Sbjct: 520 TPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIAR--------------AA 565 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + +Q + P + + +P + R L Sbjct: 566 PADWQPGADAQAAALEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHRLGGR 625 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT---PEINHLMKQIIDSHFEKEN---- 847 + + + RG H + + + ++ + +++ + Sbjct: 626 AMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTEL 685 Query: 848 --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 P + + + ++ + E + Q I + + + + L DR+ Sbjct: 686 AGYPAALRELECARATAVLANWFDSEAQRQPF---EVAQIEQEHSWQRGALALKVRLDRM 742 Query: 906 DLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 D L G I DYKTG P + ++ QL A+ L G+ +++ +A + Sbjct: 743 DRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIH 802 Query: 962 YIRLKQKFKIDCITNDKKKYSAD-------ELSEKSLKNLIEIVTLLQNG-EQPFISHLR 1013 ++ + + + + + L+ V +L + + +++ Sbjct: 803 ARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVA 862 Query: 1014 LSEKSNIQSE 1023 L + + Sbjct: 863 LRQDDLKFCD 872 Score = 38.0 bits (86), Expect = 8.4, Method: Composition-based stats. Identities = 70/752 (9%), Positives = 167/752 (22%), Gaps = 33/752 (4%) Query: 46 SVTIYVPTKRAIQELRSEFIE--ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102 + R + L + + ++ + LP I L + + P Sbjct: 24 DTLVLTVNNRLSRRLTLDLAAQLRSERQVSELPRIMPLSAWLADCAAELAFDERYEVPAY 83 Query: 103 -VSNIQRLLELARLIL--IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 +S+ L I L D + L + A A D Sbjct: 84 RLSSFATQLVWREAIRLEEADRALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGF 143 Query: 160 ETEEKKWED-LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 ++ L L E + + L+ + + L+RA Sbjct: 144 SRWRARYRAMLGELDAEDANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRAL 203 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 A+ + A P + ++ + Sbjct: 204 ADGGADVVAWRDAVREPAWPQRFEAADRGAEWRAAARWA--ADRLRADPRGRYAIVSPQL 261 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 L F + V + +++ + Sbjct: 262 EAEAPFARRVLGQALAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAARGAAEPA 321 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA-LRMSLDENKKKSALITADRN 397 + +L + A ++A R+ + A + L+E + + + Sbjct: 322 LFGAALLAGHCAGDLQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMA 381 Query: 398 LARRVKLELTRFGINIDISA--------GIPLSTTLHSSILTSLLNAIFK---------L 440 + + + T + A G ++ ++ +L + + + Sbjct: 382 IWQAGQRSDTCDAWAPRLKAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGR 441 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D A L+ F + A+ + + I L A+ K Sbjct: 442 LDGRAAVRLLASAARAGSFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTGDVLPASPK 501 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT----YKTNKNSTCGNLSISDWTKL 556 N +P R + + L + + G + + Sbjct: 502 PNPLLPLAVLRQVGAPRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLI 561 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + + L E + ++ + + + + + Sbjct: 562 ARAAPADWQPGADAQAAALEQEILDDSQGPPLEAERQSRGGLDVLDTQARNPLWAFVRHR 621 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + L L+ L + L+ +++ + Sbjct: 622 LGGRAMAPYADAATVSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAA 681 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + G A E+ + P ++ Q G R Sbjct: 682 RTELAGYPAALRELECARATAVLANWFDSEAQRQPFEVAQIEQEHSWQRGALALKVRLDR 741 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 D + RP+ Sbjct: 742 MDRLADGRALIVDYKTGAAPGRPESDWARARP 773 >gi|154149234|ref|YP_001406941.1| hypothetical protein CHAB381_1392 [Campylobacter hominis ATCC BAA-381] gi|153805243|gb|ABS52250.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381] Length = 803 Score = 133 bits (334), Expect = 2e-28, Method: Composition-based stats. Identities = 73/428 (17%), Positives = 139/428 (32%), Gaps = 41/428 (9%) Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +I+ L+ + + +LG LESR + FD +I+ N+ + PK + Sbjct: 402 LTFGNLCEILLSLLSEIKI--DDVSGGEVSVLGILESRGMKFDGVIIIDFNDDLIPKRVS 459 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQR 718 FLS +++ L E +E + + + E+ I Sbjct: 460 AEMFLSSKVRAKAGLIGHEDRENLQRFYYESLIKNAKKVAISYQENEDKIVFR------- 512 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 D D+ + YL + P + SFS++ Sbjct: 513 --FAKKFDIIDDTDYSDEAYLHVFAN-RKNKIFSFLQNDDPVCKSKLFDDALSFSKLDVF 569 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 ++ Y + + + D +G+L H ++ ++ N + + QI Sbjct: 570 LSCKRKYYYAYLANIKEPKKLETQLDFASKGSLIHEVLQKIYNDFGTFNEQKFAEVYTQI 629 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHS-FLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 K + + + K++ F + ++ + G+ Sbjct: 630 SK----KYIISDFERELSFYRIKKVNDEIFTDFLKQ---GFNFEAAEKQMETEF--CGVK 680 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 + G DRID K+G + DYK+G+ K QL+ A L Sbjct: 681 IKGKIDRIDKNKNGETLLNDYKSGNVNDK-------SYQLAFYKALL--------GLDDS 725 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI-EIVTLLQNGEQPFISHLRLSE 1016 ++I +K KI Y + + SLK+LI + QN + S E Sbjct: 726 TQSYFISIKNCAKIPSKLGINVAYESKDKIYPSLKDLIFSLKLSAQNEMK--FSRSDYFE 783 Query: 1017 KSNIQSEY 1024 K + ++ Sbjct: 784 KEAKECDF 791 >gi|237750241|ref|ZP_04580721.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374135|gb|EEO24526.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 879 Score = 133 bits (334), Expect = 2e-28, Method: Composition-based stats. Identities = 69/451 (15%), Positives = 137/451 (30%), Gaps = 56/451 (12%) Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + R I G + + ++GTLE+R L+F +++ ++ P T Sbjct: 461 TLHFENLFTLFMREIAGLKINHVA--GGKIKVIGTLEARNLHFKEVLILDFSDDFVPNVT 518 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + FL+ ++S + T + H + T NN I S L Sbjct: 519 HDDMFLNSKIRSHYGMPTRKDKENLYKHHYYNIMKNTE--ITHISFVNNEEQIESNMLFE 576 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + + + Y + + + + S + + Sbjct: 577 IGCNTESAQSIDTLYSYYDMTKQANITFYEDEYKPFGKVE----------NLSATALNVY 626 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQ 837 Y R + L + G++ H + E K I + T + + ++ Sbjct: 627 NECTRKFYYRYVEGLKE-----ERTQSQYFGSIIHEWLFESYKPYIEETLTLDSINAIES 681 Query: 838 IIDSHFEKENLPPHIDIIWRHL------------FHKISHSFLEHEEKIQS--SIEKIFV 883 S F N + + F +F E+E + SI+ + + Sbjct: 682 SFFSKFYALNTLLTQNNQEESIEIDMKTFVKLDSFTPYMRAFFEYERERVKKYSIKILGL 741 Query: 884 NIPAKMA------IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937 ++ + G L G DRID++ + + DYK+G + K + D Q+ Sbjct: 742 EYTFRIENFRINATQDTGYTLNGAIDRIDMV-DNEIVLYDYKSGASLPKSS-----DLQM 795 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 A Q L Y L K + + +K +E +K + L Sbjct: 796 PFYAMCATEMPLLQPHNGLHTKLAYYHLGAKDINKILVFNDEKK-LNENIQKIQEMLKTF 854 Query: 998 VTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + + +Y L Sbjct: 855 ---------GETNEMTEKLSTCKDCQYALLC 876 >gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328] gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328] Length = 1070 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 105/898 (11%), Positives = 214/898 (23%), Gaps = 126/898 (14%) Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213 D + + E K L N + G A+ L + + E L G + Sbjct: 261 DALKALREELVKPSLNENLINAEVGEADHKLAEMLAALKEAYREVKDHLQKLKWQGRVLT 320 Query: 214 LMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIVLPG 261 E L P I + + P ++ + + IV Sbjct: 321 FADLEIGALTALQNNPTIQLYYQQRWRSFLVDEFQDTNPIQGEILELLTQTGDLTIV--- 377 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D + N Q L ++ + ++ V + + Sbjct: 378 GDKKQSIYGFRRADIGVFNKFRKRIIDH---QGDEIILNQSFRTHQKLINQINQVFSPLL 434 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 G ++ S + E IA L+ Sbjct: 435 GDLRQDLEAVRIDPPSPRETLQVFVIPKTAETDINQ--------RRIAEGNLIAKTLKEM 486 Query: 382 LDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 LD A++T L I + S G L T Sbjct: 487 LDNQIPVFDKQTQQLRPIQPGDIAILTRTWEPLDSYGEALAAAQIPLAPSGGGNLLETQE 546 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + SLL + D +A+ L++ P + ++ L + N + + I Sbjct: 547 AKDAWSLLKFLADPGDDIALVALLRSPFFAISDRLLFNVSRQSQLSHKSTSENISWWQI- 605 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L + A + + E + + D + + + Sbjct: 606 -LTTASPAEFAKAIDTLKTL--LKQRQIEPPSRLLQIADQLTGYTAIIANLPASNRRLAD 662 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + ++ ++ R T+ S + A + + Sbjct: 663 FSGFRELVQILEQGTDDLFGVVRRLKRLKDKAV---TVERPPINTSNAVSLMTIFAAKGL 719 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + ++ + FD + K+ + Sbjct: 720 EWPMVVVADLSRPSPNSSVPV------------YFDPEYGVAIRCKDDDKDLKDPVLYNW 767 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 + + + AE + +R I + +E L Sbjct: 768 LKYRNQQREEAEALRIL----YVALTRSRDYILLTAPQEKGNYLDK--LYLGLQAANIPI 821 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + P + + + + + P Sbjct: 822 TTLEINSDDIIPPVPPSPPPPAINPPLLTNA-----MTSGLFELPVTSLSEYKRCPARFQ 876 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 IL + ++ G L HN + I+ N +Q + Sbjct: 877 FMYILGHPGLS--EEANQGMIIGQLVHNALEYDIRDIDQLGKFAQNGSNEQSLREAIYLA 934 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906 + + F+ + + ++ ++ +G+ G AD I Sbjct: 935 QEFDNTEEF---------KRFIHPKNQR-----------EVELKLDILGVTFNGVADLI- 973 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 G + DYKT + + QL A AL A++ Y+R K Sbjct: 974 ----GDNWVLDYKTDKV----MRPEHHNLQLWAYAKALNCSE---------AHIAYLRHK 1016 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + + E+ K+ IV + G P + S ++ Y Sbjct: 1017 KCYSFSP-----------EILAKTAHEAESIVRDIVEGYYP----PKPSRENCQTCRY 1059 >gi|302536760|ref|ZP_07289102.1| ATP-dependent DNA helicase [Streptomyces sp. C] gi|302445655|gb|EFL17471.1| ATP-dependent DNA helicase [Streptomyces sp. C] Length = 840 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 93/794 (11%), Positives = 190/794 (23%), Gaps = 96/794 (12%) Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + V H + A G + T + + +L + Sbjct: 9 AAVRAHRDLAAAREGGSVEVYTYPTAGAELDNIADILRRAHLEDGVPWRDMAVLVRAGGR 68 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 R ++ + + P + + ++ A + Sbjct: 69 TLPAMRRALIAAGVPAE---TDAASTPLRHEPAVSPLLTALRLTATAALPGGDREEPAPS 125 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 A+ A R + + + + A + G D Sbjct: 126 AGATALPGAAVPRDAAEAAGSGTPGAAGAGSDAPAAGVGAGADGAGGDPEG--------- 176 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +++ L+ PL L R AL Sbjct: 177 ----SAVTAGGEGWVGVEGALALLTSPLGGM--DAADLRRLGRALRDEERAAGVAVPAPS 230 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 D+ P + A L + + L T + + Sbjct: 231 DV---------LLARALAEPERLTAHDPAYARGAQRLGLLLRKTRELLQGGGTAEEALWT 281 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + W + + +L + E + + Sbjct: 282 LWDGTPWPQRLERQARRGGTGGRNADRDLDAVCALFD----NAARAEERTGGRGALNFLE 337 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + I +T+ K ++ + ++ S+ L + +++ G+ EG+WP + L Sbjct: 338 QLEAEDIAADTLTGKAVRTDAVRLMTAHRSKGLEWGLVVVAGVQEGLWPDLRRRGSLLEA 397 Query: 667 VMQSDLNLKTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 L A L+ T SR+L L V Sbjct: 398 DRIGRDGLAEPLTPGALLAEERRLFYVAATRARHRLVVTAVKAPAEDGDQPSRFLTELGV 457 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR------------------------- 756 +R +L TT P Sbjct: 458 T--PKDVTGRPRRPLAVPALVAELRATTVDPDASPALRDAAARRLARLAALTDDEDRPLV 515 Query: 757 PKPFPPLE----------------AQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHF 799 P P +P T S S + QL N + R +K D Sbjct: 516 PAAHPQRWWGLYEPTASTVPLRDRDRPVTLSGSALDQLANTCSLQWFLGREVKADAPST- 574 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 G + H ++ + + + + + Sbjct: 575 ----AAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWDALAFDAPWKSRQEKDNAR 629 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITD 917 FL + + + +++ G + + G DR++ G + D Sbjct: 630 --AALERFLRWHTTDRGGRSAVATEHDFDVTLDAGGYAVRIRGSMDRVEADPQGRAYVVD 687 Query: 918 YKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDC 973 +KTG P +E + PQL++ A++ G+ ++ + ++L+Q Sbjct: 688 FKTGKGAPTREQVARH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQGAAKRD 745 Query: 974 ITNDKKKYSADELS 987 + K A E Sbjct: 746 GGDQVPKIQAQEPL 759 >gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 1045 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 89/871 (10%), Positives = 218/871 (25%), Gaps = 135/871 (15%) Query: 154 DIIDIIET--EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 +++ + E ++ + AL Y L + L+ + + +R + A + Sbjct: 256 NLLKRMREQIEGAEYALITAL----YAPQRELLIEILRRFDRLYRDRKRQGAALDFSDLE 311 Query: 212 IALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 +R EH + I++ + A+L+ + D + Sbjct: 312 EFTVRLLEEHHETRARLQRQFDHILMDEFQDTNGQQAKLIELI---RPPDRFYAVGDINQ 368 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + + L + + R+ + Sbjct: 369 SIFGFRHAEPQGFARYRDEIATGD--------------------RHLVQLVDNFRSRAEI 408 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DE 384 +S + L V +I A EA +A + + Sbjct: 409 LSAVETLTAGAKGIEDRALVAGRRFDDAPEHSVEVIAAPETAIEAQWVARRIMELSGPEP 468 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 K A++ + + GI ++ G + + LT LL AI D + Sbjct: 469 QFKDFAVLVRNTEVIPEFTDAFDAAGIPYLVNRGRGFYASREVNDLTHLLRAIANPRDEI 528 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++A +++ PL + L+ + H Sbjct: 529 SLAVVLRSPLVNASVEALLRLKMNGENL------------GAALQRSEDALLQRFGARLH 576 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + D+ L + D + + +S+ ++ + Sbjct: 577 EWRGRREYVTFDRLLLEAIDDCGYPASGNVDKFLAQARDAASRMSLDEFVMELAQVRE-- 634 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 E + + + ++ + ++ + Sbjct: 635 --------------ENPREPDAPPEDSANAVKIMTVHSAKGLEFPVVFVA---------- 670 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + F G K+ ++ + + E+ Sbjct: 671 --AIHKGVDTGVPAVAFSRHYGLGARWRNPASGQDKDDLFQHALRREWKQREEEESNRL- 727 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-------------FFDNL 731 M + LI + + ++RL + GT + Sbjct: 728 -FYVAMTRAEQRLILSFTAAARKPQNWDKLVMERLRIEPGTPGDAVKIFEAPDGKQWKAR 786 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 Q + + ++ + P E + + + P Y R L Sbjct: 787 ILIAQAAPELLTRERTPNEEITVQFAVPPVVEEQHDSNATVTALALFAGCPRKYYLNRYL 846 Query: 792 KLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 + D + GT H ++ + + + Sbjct: 847 GFEGRAARRSEGAALDAGEFGTQVHALLA--GTAVASPDPEAV----------------- 887 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 +++ F + ++ + + + + G D + Sbjct: 888 -------------RLAEVFRQSPLGRRAENA-VRIEREFDFLLAIADQVIVGQVD-LWFE 932 Query: 909 KSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 ++G + + DYKT E + + D QL L A A++ + R F L+ Sbjct: 933 ENGELLVVDYKTDTVSASEASHRARDYGLQLRLYALAIER-----MTGRAPDRGFVHFLR 987 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 I+ S +++ ++ Sbjct: 988 PNVAIEVDLTPSLIESPEQIVRDFQDAQSKL 1018 >gi|315124915|ref|YP_004066919.1| hypothetical protein ICDCCJ07001_1412 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018637|gb|ADT66730.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 712 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 117/350 (33%), Gaps = 20/350 (5%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 376 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 433 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE + PK + FL+ ++ L + ++ +E Sbjct: 434 SRGLCFDGVILVDFNEEIIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 493 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 494 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 546 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 547 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 606 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K +N + ++ + +KE +I + +F F ++E++ Sbjct: 607 MLEIYYKNYVNNDFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 660 Query: 875 QS-SIEKIFVNIPAK--MAIESIGIHLTGFADRIDLLKSGFVD-ITDYKT 920 S + + + + I L G DRID K G + I +K+ Sbjct: 661 FSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNLIMIIKWKS 710 >gi|325680672|ref|ZP_08160210.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8] gi|324107452|gb|EGC01730.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8] Length = 1115 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 108/929 (11%), Positives = 248/929 (26%), Gaps = 165/929 (17%) Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 E L L E+ L L Y+ E L N + + + A+ Sbjct: 132 GITPEVL-QLAGERLEGSVSLKLLDLTQIFTYYLEELERANMTDSLSIMEEAVE-LADIN 189 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + ++ T R++ V LD + Sbjct: 190 NLFDGRQVFVSAFTDFSYDERRMLEICVRKAEKLTVSLLLDDNF---------------- 233 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 THP D+ ++L +++ + + + Sbjct: 234 --VKRCRTHP----------FDVTVGTQQKLVDMAKDHNKEIRFTHA---EDAVCESWDI 278 Query: 343 DILENKIPNIQK-----CFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITA 394 +L ++ ++ + V ++ AD+ EEA I L S + Sbjct: 279 MLLSERLYDLDRKEYHTANDSVQVMAADDMYEEADYICAEICQLVSSKKYVYNDIVVAVR 338 Query: 395 DRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLL-NAIFKLNDFMAIATLVKH 452 D + V L ++ I + + + + ++ + + I L+K Sbjct: 339 DMSNFGSVIASALEKYDIPYFLDKRDSVDASAIVHYICNIFKTVLTRKFRTENILKLIKS 398 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 PL L+ LE +R + ++ + + Sbjct: 399 PLFGL------LNYEICDLEDYCVRWGVDGDMWLE-------------------PFTAEP 433 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH--- 569 E L +++ + + + +L+ + Q L + Sbjct: 434 DGVGLERINDLRAKVIEPLIKFKNACKDTTAEQISLAFYELLGELKISEQTYSLVKRVST 493 Query: 570 -RKLPNLWFEEEGKTLSSL----FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 +L K L ++ I K + + D+ ++ V +K Sbjct: 494 SDNESDLEMSRGLKQLWTMSLSAVKSIHNILGKEKISLRSYFDLYELMLSQMKVSSPPQK 553 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT-------A 677 + ++ SR+ + +N+G++P + ++ ++ L LK A Sbjct: 554 LDCVRVIDAGHSRIGEVRVVFAAEVNDGIFPSSVKNGGLMTEHEKNLLKLKENILIESNA 613 Query: 678 EKYIGQAAHDFEMANGTR--HLIYTRSLREN-NIPTIASRWLQRLLVLGGT--------- 725 + L T S + S ++ + + G Sbjct: 614 LSDLMHEKLAAYSVLCAPDDRLYVTYSRADLLGNRKRPSSLVREVKEVLGVKEKSINTLP 673 Query: 726 --------------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPH---YKR 756 + + Y + L + K Sbjct: 674 VDFFCTSMKTAYSKYIEHSRDNTAAVSSIRDSLMVSREYYEKLSALKQANAKEPFRLSKE 733 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + S +++ P+ + L L D ++G + H ++ Sbjct: 734 SAKEAFFAGETAEVSPTKLDNYFKCPFMYFCNYGLHLSRSEKLD--MDGLNKGLMIHEVL 791 Query: 817 TEL-------IKKRINKNTPEINHLMKQIIDSHF----------EKENLPPHIDIIWRHL 859 + ++ + + +++++ F + + Sbjct: 792 EKAISTENITPEESRRQFLEMDEEKITELVENSFNNYYSEVFCGDFGKTKTFVYRFESMK 851 Query: 860 FHKI-SHSFLEHEEKIQSSIEKIFVNIPA---------KMAI-ESIGIHLTGFADRIDLL 908 +++ E S + + + + I L G DR D+L Sbjct: 852 KQAFNIVKYVQKELA-AGSFAPVVTEYKLKNEEGEDHLDLTLKDGRHIVLIGTIDRADIL 910 Query: 909 K-SGF--VDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKV--ANLF 961 + G V I DYK + K + ++ Q+ + + L ++ A +F Sbjct: 911 EEDGKKYVRIIDYKFRKHAKFDLGELYCGLNLQMLIYLSILLETGNPINTDMELHQAGVF 970 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKS 990 Y++L + S DEL + + Sbjct: 971 YLKLIGDGSDYSADRE---ISEDELYKAA 996 >gi|291165682|gb|EFE27730.1| ATP-dependent nuclease subunit B [Filifactor alocis ATCC 35896] Length = 1122 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 108/883 (12%), Positives = 230/883 (26%), Gaps = 134/883 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L A + ++ ++ + + L L N + + + Sbjct: 102 FELYRPVAQRQGFLTKMESLLTELKRNDIQSTALKELANRTEDKLFSQKLKEVSFLQEQM 161 Query: 196 TERLVELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 RL A L+ A + G R++ + + Sbjct: 162 ELRLTGHYA-DSEDKMNMLVNQIASCGWIQDLDF---YFFGFHSFTAIEYRIVEQLIMYA 217 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + + +S Q ++ KL + Sbjct: 218 HNVYITL---------------PMEEKESSDTINLFQTTQETVKKLRE------------ 250 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + + + + ++ + K K S V+L A EE Sbjct: 251 -FAQKSNIPVKVEFEDTNPVLEEFQLLGKNLFDYKNVVYPKETSSVSLTVAKTTEEEVHW 309 Query: 374 IAIALRMSLDENK---KKSALITADRNLARRV-KLELTRFGINIDISAGIPLSTTLHSSI 429 I + + E ++ L+ D R + + I + + L + Sbjct: 310 ICNKICELVQEEGYRYREIGLLVTDIREYGRFIRQIFPMYHIPVFVDEKKDLIHSPAMHA 369 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + SL + + + + + +K F E + + Sbjct: 370 IFSLWDIVSNGFRYEDVFSFLKAGFTSFSQSEIERLENFVLAHKIRGEMYFQ-------E 422 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 L +++ + + R + + + + + S + Sbjct: 423 KYFLKGEESEEERHQILDIRQRFEDMLLPFYRSIKKKGM-----VEEFAKQSVSFLIEKN 477 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + V L+ L+E + S+ +++E A E+ DI+ Sbjct: 478 FPQKIEEYVEELKESGLEE----FADENRQVWNIFVSILEQMVELLGSRMVKATEFRDIL 533 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 I G V + + SR + L + GL++G++PK + L + Sbjct: 534 YAGIQGHKVGILPPSQDQVIVGTLDRSRTTPTEHLFVLGLHDGMFPKVQKEGSVLEEEER 593 Query: 670 SDLNL------KTAEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTI-AS------- 713 + L EK + + + + + + + S Sbjct: 594 TKLLQYGFHLSSVREKLQAEERLSWYNHITQTKTAVYLSYAEMSYDKKVLYPSFYVDKIR 653 Query: 714 -----------------------RWLQRLLVLGGTDFFD----NLKKRGQCYLDWTRKLD 746 +LQ+L + + ++R C W Sbjct: 654 RQFPKMNVIVPKRYDDSMLYSKQAFLQQLAQMTRPVLEESDSLEQEERAFCLQGWDYLKQ 713 Query: 747 YTTKQPHYKRPKPFPPLEAQPRT-----------YSFSEIKQLINDPYAVYARRILKLDF 795 + P + P+ +S S ++Q PY + R L Sbjct: 714 QQEETLFQSAVSENPSVRYIPQKYVTSLYGNKVYFSASGLEQYARCPYKHFIHRAL--SP 771 Query: 796 IPHFKKDPDRTDRGTLFHNIITE---LIKKRIN--------KNTPEINHLMKQIIDSHFE 844 + + + TD G L H I E +KK +N EIN + Q D Sbjct: 772 KERARYEMEETDIGILVHGCIDEFTDFLKKHPELSEQWDEKRNQEEINAIFSQYADKMLG 831 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIPAK-------MAIESIG 895 + K + ++ + + + + + + Sbjct: 832 VSFEDNARNQYLLRKIRKTTEETAKYVVRHLNLGTFKIWGQEVGFGYGKDYPAVELIEDT 891 Query: 896 IHLTGFADRIDLL--KSGFVD-ITDYKTGDNP-KKETAQKLID 934 +L G DR+D+ + DYKTG A + D Sbjct: 892 AYLRGRIDRVDVCHKDDKDYIKVIDYKTGKKTFHLSDAWQGYD 934 >gi|171912576|ref|ZP_02928046.1| hypothetical protein VspiD_15390 [Verrucomicrobium spinosum DSM 4136] Length = 955 Score = 132 bits (331), Expect = 4e-28, Method: Composition-based stats. Identities = 91/715 (12%), Positives = 209/715 (29%), Gaps = 83/715 (11%) Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391 + ++ + ++A +++ L L ++ A+ Sbjct: 239 RAGFDEIGMPRILSWGDDAGLECPLPHDRMHRVPGAEDQAR-LSVRLLGELAATGQEVAV 297 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 D L ++ LT G+ + AG +L + A + ++ Sbjct: 298 GACDPALNSVLEGTLTSQGVRVYNPAGRSARQHGLVQVLRAGWRAARS-ASWRDWLPFLR 356 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 ++ + + + TH+P + Sbjct: 357 -----------------------LDDVSRALCAETGMLVTKYYEQLDEFDATHLPP--TV 391 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + Q ++ +V + + ++ ++ + EH+K Sbjct: 392 RDAQSLAGLHEAWAELGQVLSAVVRHAEGWAAETCEGAVRNFLLWLYGETEFDSGREHQK 451 Query: 572 LPNLWFEEEGKTLSSLFS-KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 F + + + + S A A W+ ++ ++ + ++ + + Sbjct: 452 HHGELFGQVVRLAMQMDEGRAAAGASSSPAEAAAWLGLVFDALEEGQLTDLRGEADLV-L 510 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 G LE L++ G N+ P +PFL ++ L L + A+ + Sbjct: 511 HGWLELLWEPAPGLVITGFNDEHVPGTLTADPFLPDKAKAALGLPCQATRRARDAYFLKA 570 Query: 691 AN------GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 T H++ R E + SR L +L R Sbjct: 571 MAEQRSGSRTLHIVLGRHTAEGDA-LRPSRLLLDASDDDLPLRVKHLFPAEDEVQAPPRP 629 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 L Q P + S + +++ + P+ Y +L ++ + ++ Sbjct: 630 LRTQAFQL------TPPLRKWTRSAISPTALRRYLQCPFRFYLTDVLGMESVSTGLRELS 683 Query: 805 RTDRGTLFHNIITELIKKRI---NKNTPEINHLMKQIIDS--HFEKENLPPHIDIIWRHL 859 G L H + + +++ I ++ +D P + Sbjct: 684 PATVGDLIHQVFKAFADETAVAESRDAGIIAAWLEAELDRRAALYFGAEPLFSVTLQVES 743 Query: 860 FHKISHSFLEHEEK-IQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDL-LKSGFVDI 915 + +F E + + + + A ++ G+ L+G DRID K+G + + Sbjct: 744 LRQRLAAFAEKQAELREQGWRILRAEEKIQADWGVDLGGVILSGKIDRIDRNDKTGMLRV 803 Query: 916 TDYKTGDNPKKE--------------------------TAQKLIDPQLSLEAAALKAGSF 949 DYKT +E A+ D QL L A A+ Sbjct: 804 IDYKTSRKKPEEAHHRSARKELLADENQSWKCFDDARGKARCWTDLQLPLYARAVS---- 859 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 +++ Y L + + + +L + + E V +++G Sbjct: 860 AKLADGAPVEAAYFLL--PATVSEVKTHVWEGLDADLMDAAGDCACEAVRRIRDG 912 Score = 38.0 bits (86), Expect = 9.9, Method: Composition-based stats. Identities = 82/766 (10%), Positives = 186/766 (24%), Gaps = 49/766 (6%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L L+ I VPT ++ LR G + + + + + + P Sbjct: 32 LDLSDTLIIVPTAETVRRLREALAVEAGARDS----VVTAPHLWHAALVFQPKATTM--P 85 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE- 160 S +Q ++ L + L + + A +A+ + + Sbjct: 86 LASPLQERAAWTEVLAKV---------PLGEMTALFPAAPESQDLTWASAVAETVGTLRK 136 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 T L A G+ L + + E L + + R E Sbjct: 137 TLGAGGYTLAAGAEALAGLDDPARWSQLARLEELYLETLEAWGLADGESAKQGAAR---E 193 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + + + + P + V+ I + A ++ I Sbjct: 194 ATLPEGVKQVKVFAVADAPPLFGVWLRHVSEKVPSGIFVQA--PAEGRAGFDEIGMPRIL 251 Query: 281 ITSSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + + ++ D R V+ LG ++ ++ L Sbjct: 252 SWGDDAGLECPLPHDRMHRVPGAEDQARLSVRLLGELAATGQEVAVGACDPALNSVLEGT 311 Query: 340 RNTDILENKIPNIQKCFS-DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398 + + P + + + R + L + AL L Sbjct: 312 LTSQGVRVYNPAGRSARQHGLVQVLRAGWRAARSASWRDWLPFLRLDDVSRALCAETGML 371 Query: 399 ARRVKLELTRFG----INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + +L F A + L +L+A+ + + A Sbjct: 372 VTKYYEQLDEFDATHLPPTVRDAQSLAGLHEAWAELGQVLSAVVRHAEGWAAE------- 424 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G +L E + R ++ + + Q + + R + Sbjct: 425 TCEGAVRNFLLWLYGETEFDSGREHQKHHG----------ELFGQVVRLAMQMDEGRAAA 474 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV--CLDEHRKL 572 + L + +L + W +L + + Sbjct: 475 GASSSPAEAAAWLGLVFDALEEGQLTDLRGEADLVLHGWLELLWEPAPGLVITGFNDEHV 534 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 P + + + + + +A ++ + G + T Sbjct: 535 PGTLTADPFLPDKAKAALGLPCQATRRARDAYFLKAMAEQRSGSRTLHIVLGRHTAEGDA 594 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-SDLNLKTAEKYIGQAAHDFEMA 691 SRLL + L + R ++ L + ++A Sbjct: 595 LRPSRLLLDASDDDLPLRVKHLFPAEDEVQAPPRPLRTQAFQLTPPLRKWTRSAISPTAL 654 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT--T 749 + L + S L+ L D + K D Sbjct: 655 RRYLQCPFRFYLTDVLGMESVSTGLRELSPATVGDLIHQVFKAFADETAVAESRDAGIIA 714 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + + +S + + + A +A + +L Sbjct: 715 AWLEAELDRRAALYFGAEPLFSVTLQVESLRQRLAAFAEKQAELRE 760 >gi|34556981|ref|NP_906796.1| hypothetical protein WS0562 [Wolinella succinogenes DSM 1740] gi|34482696|emb|CAE09696.1| conserved hypothetical protein [Wolinella succinogenes] Length = 732 Score = 132 bits (331), Expect = 4e-28, Method: Composition-based stats. Identities = 74/487 (15%), Positives = 153/487 (31%), Gaps = 42/487 (8%) Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 V + I ++ +P + + + + + + + + S+ Sbjct: 228 WVNEGIEPERIAIILPDERFADYLRLFDKERNFNYAMGERFSDSSLFLSLQKEIERLESL 287 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIETGSCIKANAIEWID 607 + L + E + L + + ++ + Sbjct: 288 PP-PASLLELSPLGLEALRAFTLELESQGEIEASRLLQEGITLLAPLERILENRPPS--E 344 Query: 608 IITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ L+ T + + ++G LE+R LNFD +++ NEG+ PK + K+ FL+ Sbjct: 345 ILRLLLKEFATRRIDDVGGGRIRVMGILETRGLNFDRVVVVDFNEGLIPKPSDKDLFLNS 404 Query: 667 VMQSDLNLKTAEKYIGQAAHDFE-MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 +++ +L T + H + + + + E N P+ LQ + G Sbjct: 405 SIRAKCHLPTRLERENLQKHYYLSLLRRAKESVLAFVSNEQNEPSRMLLELQTPIFSGKE 464 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + L + + + ++ + +S S ++ + Sbjct: 465 LYERTLFGAPREHKGFVEEIIDSIPWE--------------RERFSHSRLQSFLLCKRQY 510 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 Y R I + G H + E + ++ S +K Sbjct: 511 YYRYIRGYSQREEENES---AWLGKTVHRWLKESF------DPSISQKKRREHFLSLLQK 561 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVNIPAKMAIESIGIHLTGFADR 904 E P K F E E++ + +++ + +E I GF DR Sbjct: 562 ERFPSAKLAFEARATAKKMERFFEREKERAKEGAQPLWLEERVEFEVEGIDFV--GFIDR 619 Query: 905 IDLLKSGFVDITDYKTGDNPKK---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 +D + I DYK K +K D Q +L A AL+ ++ F Sbjct: 620 VDRVGE-EYWILDYKLKKALKVDKERDLEKTSDFQFALYAQALRQ----RVGGAVAIRAF 674 Query: 962 YIRLKQK 968 Y L + Sbjct: 675 YYDLFKG 681 >gi|296392993|ref|YP_003657877.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296180140|gb|ADG97046.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 1025 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 115/1033 (11%), Positives = 261/1033 (25%), Gaps = 149/1033 (14%) Query: 47 VTIYVPTKRAIQELRS----EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + + A LR+ + + + + P++++ A S N P Sbjct: 57 TVVLTSNRAAADRLRAQIHGRLLRASPQLALAKPLVRTTHSYAFALLEARARASGNPPPR 116 Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + ++ L L + ++ L + Sbjct: 117 LIPAAEQDATLREL------------AIDQAARWPEPLRAALGSMEFTAQLRSVFQRAAQ 164 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER----LVELNASSPVGYQIALMRA 217 E L AL + W+ A + + T R + + AS L+ A Sbjct: 165 HGHGPEGLIALGTARARPEWVAAGRTWREYEQVMTLRGAVGMADPAASPGALDAAELLGA 224 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + + + + G GS + + P A + Sbjct: 225 ALDAVAEDPDLLLHPLGKPGSRF---------------VVFVDDAQHFDPQAARLSSLAA 269 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + T + + RE + S + + + P Sbjct: 270 RRADLAVCTVDPDQSVFWFQGAQTGPGLWREAEQLRLGPSQRLSSSVAQLVAAVAPRSAP 329 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397 + + + + + A ++ A + + L+ + Sbjct: 330 QVATCR------ESAGEAQTRLYPTVAAQAEGVVEALCRAHARDQVPWSRMAVLVRSVPV 383 Query: 398 LARRVKLELTRFGINIDISA--GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 L + + + ++A G + T S++L+ L K + L+ P+A Sbjct: 384 LEPSLARAAALADVPLRLAAMSGPLAANTAVSALLSLLKALARKALEPATALELLVSPIA 443 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + R L++ DR + V + E Sbjct: 444 GASVAQARSLRRL-------------------LRAQEPDRPSLDLLAELVLGAREHDVPE 484 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + + T + S S + Sbjct: 485 PVLRLRRVWRAACEALGAPA--PTVETVLWAAWSASGLEERLPE--------------GD 528 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + ++ + + A + + S + +L Sbjct: 529 FAAVRALFAAARAQRAADAADAAAELARFAERVERERLPVSATLGDGGGSDAVTLLSAHA 588 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD--------LNLKTAEKYIGQAAHD 687 + +D +++ G+ EG+WP + + L + L ++ + Q Sbjct: 589 AAGQEWDVVVVCGVQEGLWPGFSESSSLLGVDELAAALAGTPAEAKLDARKQVLAQERRL 648 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +A + E + SR+L L L +R + Sbjct: 649 LYLACSRAREQLLVTAVEGEGDLVPSRFLAPLAPLALRTQEHGPAERAAAAPPPAPATPW 708 Query: 748 TTKQPHYKRPKPF-----------------------------------------PPLEAQ 766 ++ + P + Sbjct: 709 SSAGVVAELRALACGADQHRAQRAAAALAALAQAGVIGAHPKSWHGLAEVSTSEPLAKDG 768 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 T S S ++QL++ P R + GT H + + R + Sbjct: 769 SLTLSPSRVQQLLDCPLRWLFERAMPAAPGE-------AAAIGTAVH--LLASVADRFPE 819 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + ++ +F+ + + ++ V IP Sbjct: 820 DELQAALDAAARAADERSARPPWAAQRRREQ--LARLFAAFMAWRNASRGELTQVGVEIP 877 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 +M++ G+ L G DR++ G + I D KT P+ + + DPQL+ ++ Sbjct: 878 VEMSV--SGVTLRGRIDRLERTARGELVIVDLKTAATPRSAASVR-EDPQLACYQLVVRM 934 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 VA + L + ++ +E + + + E + Sbjct: 935 -----ARDEPVAGGKLVYLGALRQETGAAEREQPALTEEEAAQWNSTIREAAAAAAGPQ- 988 Query: 1007 PFISHLRLSEKSN 1019 F + S Sbjct: 989 -FRARPNQHCGSC 1000 >gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] Length = 1180 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 108/1011 (10%), Positives = 236/1011 (23%), Gaps = 126/1011 (12%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL------RSEFIEITGKKSTIL 75 A + D LASV + A + L R F T + Sbjct: 169 AEARASVLHKAEMEPDSPFGQALASVIDLMSDGGAQKALDELIQNRDAFRRWTVDAGGLE 228 Query: 76 PIIKSLGD---------VVEEKFTADLLLSYNLNPPVSNIQRLLELAR--------LILI 118 P + +L D + + ++LN +S + L + L+ Sbjct: 229 PALHALADDLEIDPAQQLSDFDRRFRSECPFDLNTCLSYSEALNTGTKTDQGKAEALVAA 288 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIW---LAKNLADIIDIIETEEKKWEDLHALKNE 175 R P + ++ + L+ + ++ + + D++D + E+ + +L + Sbjct: 289 IRQTDPGLFREAWLPVFLTGKLEARKSLATKKVTEAFPDMVDALIAEQARLLELLD-ERR 347 Query: 176 KYGMWW--LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------- 226 K + + Y+ + A+ Sbjct: 348 KVVTYAGTVALLRLADAVITYYERAKTAKGYLDFEDLVVKTATLLAKSDAAQWVQYKLDQ 407 Query: 227 -KGPIIIAGSTGSIPATARLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + P +++ +A + D + Sbjct: 408 GLDHILVDEAQDTSPRQWEVVNALAAEFFVGDSGREKVRTLFAVGDEKQSIYSFQGAVPA 467 Query: 278 STNITSSNTTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + Q S D L E K + Sbjct: 468 YFDQMRRAFSRQAQSAEQEFHSVNLQLSFRSTPDVLGAVDEVFKDASAYQGLSQDGVAPV 527 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE-----REEAISIAIALRMSL 382 ++ E ++ V + + + + A +I + Sbjct: 528 HEAIRLDPGIVDLWPLETEAEVSEPDDWRLPVDHVGSGSPMLKVAKRIASTIKGWMLDGT 587 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 E L+ + EL I S + L+ + L +L + D Sbjct: 588 AEPGDVMILVRKRGPFVEALNRELKNLNIPAAGSDRLILTDHIAVQDLAALGRFLLLPED 647 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 +++A ++K PL + L + G + ++ + ++ Sbjct: 648 DLSLAAVLKSPLFG--LDDMDLLEVARETDEKIRPGTLWQMLVKRSEASTKWQEVRRQLE 705 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 E + + + + ++ LT+ Q Sbjct: 706 DWRARADFVPPYEFYARLL--------GADGGRQAFRRRLGVEVDDVLDEFLALTIAYEQ 757 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 L W + + + + + ++ ++ P Sbjct: 758 AGTPGLEGFLA--WMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPVS 815 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 F+ L+ +L+ + + Sbjct: 816 AIHDPSFLPRPRPGHDLSPPSLVWL-----------PPKTDRISWHDEAVETLRKGQEEE 864 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L+ L + W Sbjct: 865 YRRLLYVALTRAEDRLIVCGWEPKRGAH--DNCWYSLVSAALKPQAKELHDADGDVVGWR 922 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + D + P P P + + + P R ++L F+ Sbjct: 923 WQKDPSAGTGRA--PSPGHPRTDASVSGDDHTLPDWAHQPVK-PVSRKIRLQPSKAFEDM 979 Query: 803 PD----------------------RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 D +RG L H ++ L + Q + Sbjct: 980 EDKDGIEPVPAVARLAAGRQPDSWPLERGRLVHRLLELLPDLPAASRMAAAEAFLDQALK 1039 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIH 897 F K LE E E + I + Sbjct: 1040 PVFAPFKDT----------LLKELAQVLEKPEFQPVFSENSRAEVALTGTIRSANGTDVE 1089 Query: 898 LTGFADRIDLLKSGFVDITDYKTG-DNP-KKETAQKLIDPQLSLEAAALKA 946 ++G DR+ + + V I DYKT P + QLS+ L+ Sbjct: 1090 VSGQIDRLIVDGN-EVVIVDYKTNLQPPETLDQVPLEYRAQLSVYKELLRQ 1139 >gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB5] Length = 1159 Score = 131 bits (330), Expect = 5e-28, Method: Composition-based stats. Identities = 95/857 (11%), Positives = 214/857 (24%), Gaps = 89/857 (10%) Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWWLLAADFLKIASKYWTE 197 P +A ++ ++ E + EDL + ++ Sbjct: 302 PRKSLATKKIADAAPGFVEDLKREGARLEDLLERRRALLMRERTRALLVIAADVAERIRR 361 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTK-------GPIIIAGSTGSIPATARLMSTV- 249 E + ++I + + P +++ + Sbjct: 362 EKQERGLLDYDDLIDKTLAMLDSGASSWVHFKLDRGVDHVLIDEAQDTSPKQWDIVAHLI 421 Query: 250 --------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---------- 291 A V D + K H Sbjct: 422 AEFTAGEGARDGVRRTVFAVGDEKQSIFSFQGAVPKEFAERRDLLQRRFHGAGLNFEKVS 481 Query: 292 PQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 YS L + + + + S + P D+ ++ ++K Sbjct: 482 FNYSFRSGATILQSVDHVFRDPDIYRSIHADAAYPLHQSLADAGPSVIDLWPLELPDDKQ 541 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALR--------------MSLDENKKKSALITAD 395 A+ E E A + + L+ Sbjct: 542 NIEGWRAPFDAVSETSPEVRLAQKVQAEIASLIAGGTMTGSLGDRRRLRFGDVLVLVRRR 601 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + V L R GI + + + L+ + L +L +A+ D +A+A +K PL Sbjct: 602 GSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLF 661 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + + + L K + D +L +++ T P Sbjct: 662 GLDDDDLFRLAWRRKGSLRHALREKAAGDAKLATALQRLDACAERSQTDTPFGFYAWLLG 721 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 ++ + N ++ ++ +L ++ Q + Sbjct: 722 GVGGRARILRRLGP---------------EANDALDEFLELALSYEQKAAPSLQGFMA-- 764 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 W + + + + + ++ + T P + L L Sbjct: 765 WLRAADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPSDTQRLNLIRLPGGN 824 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ + ++ G RV++ +E + Sbjct: 825 AQPGSVGAMVWAGRKSND-----------PRVVEQARAEMVSETEDEYRRLLYVAMTRAA 873 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--YLDWTRKLDYTTKQPH 753 + N + + L+ G + ++ + R D T+ Sbjct: 874 DRLIVGGCMPGNRNEVRALSWYDLISKGLENSGLTMRTAPPDGAVKRYCRPEDEVTEIAP 933 Query: 754 YKRPKPFPP----LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 ++ PP + L+ A ++ + RG Sbjct: 934 SEQAPAAPPLVMPDWLHKAAPALRRPDNLLRPSDPDDADHR-RIRRGETEAQRQRALQRG 992 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 TL H ++ L + + + + D +E ++ + + F Sbjct: 993 TLVHRLLQSLPDLPADIRANAADRFLLRNADDWSPQERDALAARVLEVISDDRFAAVF-- 1050 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKE 927 + + V I ++ + ++G DR+ + V I DYKT P Sbjct: 1051 ------APGSRAEVPIVGRLQRHGEPVLISGQIDRLVVT-DAEVLIVDYKTNHAPPRSLA 1103 Query: 928 TAQKLIDPQLSLEAAAL 944 QL+L A L Sbjct: 1104 ETPPAYVRQLALYRAVL 1120 >gi|189485138|ref|YP_001956079.1| hypothetical protein TGRD_135 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287097|dbj|BAG13618.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 933 Score = 131 bits (330), Expect = 5e-28, Method: Composition-based stats. Identities = 101/695 (14%), Positives = 219/695 (31%), Gaps = 63/695 (9%) Query: 346 ENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 +P+I+ + + + A +++ + + + + + K+A+I D + + V Sbjct: 245 GEPLPDIENKKDEYKLNIYSAFDDQSQGALLKNLISGYSENDLDKTAVIVPDSKMLQSVI 304 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL----NDFMAIATLVKHPLAKFGF 459 E++ ++SAG P T S+L +++ A + ++ +PL K Sbjct: 305 SEISIVTDRYNVSAGYPAEKTPVFSLLNAIIEAQLSRKGEYYYSKDVMKVLTNPLVKNME 364 Query: 460 ---PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 A +E + + N + Q + Sbjct: 365 FLGESSISRTAVYKIEEALNQYSGNCLSGRMFVAFKEIIGEKQIIDEISLAVNEVWEYTA 424 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 E + + T+ ++S L+ + +L Sbjct: 425 PEEI------MKMLKEIFDVFFTSWEKIETLNNLSYI---LSELLEKIYSLSVAANYSLN 475 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E LS S K + ++ +LI + + L ILG LES Sbjct: 476 AEATELLLSLAKELKFGEVSQAKFQNEDVLNTFKKLIKNKRIVLPGSPLKGLQILGLLES 535 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695 R L+F+ + + G+ + P + + + + L ++ A+K + + F+ G + Sbjct: 536 RNLSFENVFIVGMIDSAIPAVKKEYSLIPKDIMYALGIEIAKKELEIQQYHFDRLISGAK 595 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 +L + + SR+++ L+ + D + ++ K+ + K Sbjct: 596 NLNLIYPDNDKD---ERSRFIESLIWNKQFENKDINIVKINKFVLPKFLAKQPAKRKYAK 652 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 K + +Y+ S+I ++ Y +L LD ++ D G H+ Sbjct: 653 TKKIR--EYLKNMSYTHSKIDAYLSCKLKFYFMHVLILDERTKVGQEFSAVDIGNFVHSF 710 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-LFHKIS----HSFLEH 870 + + + ++++ + K+ + PH + ++ + L + Sbjct: 711 LKDTLCEKLDSKKLQTLEFEKEYFKKFENSFDNSPHFKFREDAFMIKEVLLYRMKNILHY 770 Query: 871 EEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--- 924 E S I DRID I DYKTG P Sbjct: 771 ERLR-SYKNIYGCEKKYYSNIKTASGETYKFNCRIDRIDTDGEN-YMIFDYKTGAAPGSI 828 Query: 925 -------------KKETAQKLI-DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 ++ +K + QL L F + V +K+ Sbjct: 829 VSNKYFDLMSNNFDRQNIKKAVSSMQLPLY-----KNIFEKETDFAVLECGIYDIKKAEI 883 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 I E+ +K + + ++ + GE Sbjct: 884 IKFPERK-------EIYDKCIDAVRSLLDEINTGE 911 >gi|326790760|ref|YP_004308581.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326541524|gb|ADZ83383.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 1131 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 115/955 (12%), Positives = 257/955 (26%), Gaps = 170/955 (17%) Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + + S + E F + +++R++ L R+I + ++ K++ Sbjct: 57 PGLLRAEVISFNTLAREVFKEVGKAEV---AVIEDLERMIILKRVIEAHKKEIIFYKKNM 113 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-WLLAADFLK 189 + + I ++E E L L K + + Sbjct: 114 NNT-------------GFIEAINRFITVLEQAGVSKEQLGELIENKEATLLFKSKLTDIH 160 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + + + L + + + L+ + K K + I G G ++ + Sbjct: 161 MLYEAFEDYLGNQFVT--IEKNMTLLASSIMKSKKLEKAWLWIDGFYGFTYNQLLIIKEL 218 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G + +D T ++ +++P Y ++L L E+ Sbjct: 219 MKKVKGLTITLPMDKSY---------------TRTDKVRNSYPFYESIQMLQKLMGICEE 263 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V+ + ++L L+ +K + L + E Sbjct: 264 QHLAYEVNYVKGAGEKNEALAYL--------EGQYLKPYANPYEKENEAIYLQTYGSRAE 315 Query: 370 EAISIAIAL----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 E +A + + ++ + ++ + I + + T Sbjct: 316 EVEQVAKQIVTLVMEEGYRYHDMAVIVGDLADYKTLLEGAFKEYEIPYFLDMKRNIHTNS 375 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L +L + + +I L++ + E L + + Sbjct: 376 LVAALEGVLEVLTSNYSYKSIMGLLRTQILPISIEEIDLLENYLLAYGIKGKKKWAQPWG 435 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 D + EE + + + IL I L + Sbjct: 436 FD-----------------------QKDEEKQARINITREAILGPIQKLE-MTIQMTKSS 471 Query: 546 GNLSISDWTKLTVTCLQNVCL------------DEHRKLPNLWFEEEGKTLSSLFSKIIE 593 G + D TK L+++ E +L + + + +F ++++ Sbjct: 472 GKNKVVDLTKALYGFLEDIGAYSKLNEIIAKHKAEGNRLLEIENTQIWGKIMEVFERLVD 531 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + + + + I+ + + I +RL + G NEGV Sbjct: 532 ILGEEELSLMTYRRILETSFSYVKMGVIPPAQDQVLIGSVDRTRLPRLKACFILGTNEGV 591 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKY---------------IGQAAHDFEMANGTRHLI 698 PK P S + ++ L+ E G + M + Sbjct: 592 IPKVDETTPIFSDMDKASLSQMCKEDKGPKGRLNELIIDQPLYGGQFSIYSMLTRATEKL 651 Query: 699 YTRSL--RENNIPTIASRWLQRLLVLGGT--------------DFFDNLKKRGQCYLDWT 742 + + EN P S +L L G G ++ Sbjct: 652 FVSAAMADENGKPLRTSLVYYKLKKLFGETPKPLQGDFLSQIYRPLPTFGYVGNLLREYV 711 Query: 743 R-KLDYTTKQPHYKRPKPFPPLEAQPRTY----------------------------SFS 773 +L+ + + + + S S Sbjct: 712 EGRLEEEAWKDLVSWYATKDEWKDRLKGLTDYLFYTNQQHYLQEETTHLLYGNKLDTSIS 771 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 +++ + R +K + F+ DR GTLFH + + K+ NT Sbjct: 772 KLETFRQCACCYFMRYGIKAEERRLFR--FDRAKVGTLFHAALEQYPKELSLMNTTWTKA 829 Query: 834 LMKQI----------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKI 881 +++ + K++ + E + Sbjct: 830 TREEMQQGVKKATAYAVEQVNEAQRETGRFQFTAAKVEKMTSRAIHALTAHLKNGEFEPM 889 Query: 882 FVNIPAK-------MAIESIGIH---LTGFADRIDL---LKSGFVD-ITDYKTGD 922 I + I + +TG DR+D+ + I DYK+G Sbjct: 890 GYEINFGEGKGFPPIEIAIDEVRTILVTGQIDRVDVYYKDDNQQYIKILDYKSGQ 944 >gi|251764594|sp|Q897P5|ADDB_CLOTE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB Length = 1150 Score = 131 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 117/952 (12%), Positives = 262/952 (27%), Gaps = 129/952 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMW--WLLAADFLK 189 L + + AN L+DII + E + L+ + + Sbjct: 103 TGELKIFNNAANKNGFVSTLSDIITEFKRYNLTPEMIKEYLEVAEEREDNILKGKLQDIY 162 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + + + + L E I + P ++ + Sbjct: 163 LIYSKFQDSIRKK-FIDEEENLTILADKLKESKY-FDGAYIWVDEFFNFTPQEYLVLEEL 220 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + + + + + +IK E Sbjct: 221 LLKAEKVNITLCTGGLNEGERIDNLDLFLPVKNTEEKILE---------FVKRNNIKYEK 271 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 +L + S +S + + D+ + +A NE Sbjct: 272 PIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKY----------TEDICVFQALNEYS 321 Query: 370 EAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTL 425 E A + + +N K A+IT D + + T +GI I + Sbjct: 322 EIEYTARDIIKLVRDNGFRYKDIAVITGDLEGYQSLIKAVFTEYGIPYFIDKKVEGDNNP 381 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + S L + K ++ ++ +K L E + +E L Sbjct: 382 LVIFILSSLEVLNKNWNYESVFRYLKAGLVDIKREEIDI------IENYVLANGIRGKRW 435 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 ++ K + + ++ E+ + + +++ + T K Sbjct: 436 IEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKITEPLIEFHNNIKGEITPKKMCL 495 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ + + R + +++ L +++E K N+ Sbjct: 496 ELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWDVAIGLMEQLVEVMKEEKLNSR 555 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 +I + + + + T R L + G N+GV+P +N Sbjct: 556 TLENIFKSGFEQYELGIIPPSLDQVLVSSTKRLRSHEIKALYIVGTNDGVFPSVLDENGI 615 Query: 664 LSRVMQ---SDLNLKTAEKY----IGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASR 714 LS + + + L+ A+ + + L + E S Sbjct: 616 LSDLERENLRETGLEVAKDTKSTAFEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSI 675 Query: 715 WLQRLL--------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + RL G + + K ++ R + + Sbjct: 676 VISRLRKIFPNLCEKSNVIKEEGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYD 735 Query: 761 PPLEAQPRT---------------------------------YSFSEIKQLINDPYAVYA 787 + + S S +++ P+A + Sbjct: 736 WFMNNKEWKEKFINISQGFNHTNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFI 795 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQ-----IID 840 R + D GTL H+++ + KN EI+ + + ++D Sbjct: 796 RYGMNAKERK--IYKVSTPDIGTLMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVD 853 Query: 841 SHFEK-----ENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA------ 887 + N P + + I +E ++ + + + Sbjct: 854 EKIKDMKGSILNSSPRYKHMT-NRIKDILSKSMEVISQQISRGDFKPSAYELAFGFNGDF 912 Query: 888 ---KMAIESIG-IHLTGFADRIDLL--KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSL 939 + + S ++L G DR+D L + G + I DYK+G + QL + Sbjct: 913 PPISIELSSGEKVNLIGRIDRVDKLENEDGTFIRIIDYKSGKQDFNLSDIYYGLQIQLLV 972 Query: 940 EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 A L+ S A + Y + D + + KK+ + +E ++ Sbjct: 973 YLDALLQEIEDSAKKEVNPAGILYFNMD-----DPLISTKKEITKEEAEKEI 1019 >gi|227486916|ref|ZP_03917232.1| helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092990|gb|EEI28302.1| helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 1025 Score = 131 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 121/1074 (11%), Positives = 293/1074 (27%), Gaps = 168/1074 (15%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF-IEITGKKS---TILPIIK 79 A + + + R L + I +KR+ ++ +S P + Sbjct: 45 AGVTSLIRDAARARLLAGTDPDRLLIVTHSKRSALAFEEALWDDLVASRSDEENAAPYVA 104 Query: 80 ------SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133 S+ + + + P RL+ A + R L + Sbjct: 105 ESKLAQSVHSLAFSIVHYAAIANNVPAP------RLMTGAEQDAVIRELLKGNQEAGGEY 158 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 P + + + A+ L D + K D+ L ++ W+ A FL+ + Sbjct: 159 WPAER-VEALDYVGFARGLRDFLLRAGERGKSAADVKKLGEQENKPLWVAAGAFLEEYTA 217 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST 248 L +++ + I +RA ++ + + + + P + +L+ Sbjct: 218 VMN--LQQMHHLNASELLITAVRALEDNPALLEKMRNRYDFLAVDNAQHLDPLSQKLVEM 275 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H I + G + + + S T Sbjct: 276 IGEHTP--IFVVGGNTNGLVYSFRGANTDLVEDKSGKTVI-------------------- 313 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + +SF P + T + I + +V LI Sbjct: 314 -----------------TLEQSFRRPSDKRIIYTHTAGDNFSVIARELREVHLI------ 350 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427 D + +IT + ++ L + + S + L Sbjct: 351 -------------RDIPWEDMVVITRSLSQIPALQRALATADVPVHIDSTDVVLVEQSIV 397 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + ++ + I L P+ L R + Sbjct: 398 QAMLQAVDIVMGNGTEEDIIELATGPIGG--ADPITLRRIQRE----------------- 438 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + +RL E+ + + L I + + + Sbjct: 439 -----IGELGPVVRGAAGVAEDARLGEQAESVLTHLSAVIQTGREAVERGDSLELILWSI 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + + + +L E ++ + + ++ + +I+ Sbjct: 494 WEATGLSTSKMYTALRGGPAAAQANRDLNAMMELFDVAGDYVERVKQP-----SLEGFIE 548 Query: 608 IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +T V+ + + + +L + ++T+IL G ++ WP + Sbjct: 549 HLTSQDLPTGVRERQVVAPKAVALLTAHGAIDDEWNTVILAGADDDSWPSLGLTGTIFDQ 608 Query: 667 VMQSDLNLK----------TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT---IAS 713 DL + E+ + + + + ++ + S Sbjct: 609 EELVDLIDENVDPDAYIDRLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPS 668 Query: 714 RWLQRLLV----------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 R++++L + + D + ++ Sbjct: 669 RFVRKLEEDETFSVSTVVETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLA 728 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-------------------FKKDPD 804 +A + L A R + + + Sbjct: 729 DAGFSEAEPTNWWGLAGPTDAQPLREPGQPATLSPSQVESGLQCPLKMVLNSVTPTESSS 788 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 G L H + + + ++ T + + ++D++ +PP + F ++ Sbjct: 789 ALREGNLLHALAEASVTLQQDEETWKEAEQL--VLDAYLSSRTVPPWKEKADEEEFVEVM 846 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLKSGFVDITDYKT 920 ++ + + + + V IP + + + I + G DR+ G + + D KT Sbjct: 847 NATVSKMTNLAGDL--VGVEIPMDVTVGQLDDGSPIRIKGRLDRVHRDSEGRMKVYDLKT 904 Query: 921 GD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR-LKQKFKIDCITNDK 978 G P + A+ PQ+++ + + V + L+ Sbjct: 905 GRSAPTYQEAESH--PQMAVYQLGINHSRIQENPLEFVTDDGSGGALQSGGAELVYPRST 962 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 KK S L+E + + L++ + L + L K Y + + E Sbjct: 963 KKPSQKPLTEDNARILMDNLRQLVHHTSGST-VPALPNKHCGSCAYRIICPITE 1015 >gi|197124366|ref|YP_002136317.1| hypothetical protein AnaeK_3983 [Anaeromyxobacter sp. K] gi|196174215|gb|ACG75188.1| conserved hypothetical protein [Anaeromyxobacter sp. K] Length = 1100 Score = 131 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 146/1050 (13%), Positives = 297/1050 (28%), Gaps = 140/1050 (13%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L S TI VP++R LR E ++ +L + LG TA + + Sbjct: 24 PLPSRTILVPSERHAHALRRELARS--GRAGVLAGTRFLG-----PLTAAIEVLQAAGVA 76 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + L ARL+ ++ LP DL + A I +E Sbjct: 77 FTPGEGALRPARLLALFHEDLPLEHFDLDL---------LRTTRGWDEAFASAIGELEAA 127 Query: 163 EKKWEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 DL A W + + + + R+ A+ A Sbjct: 128 GLGPRDLPAEPAAARDLARLWSRVEESAG--TSFSSARIFREAAALLARDPGAWPFLGPT 185 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + + AG +IPA + T P G L + H + + + + + Sbjct: 186 LALATGHEDAVHAGFLQAIPAVRLAVQTA--RPMGERHLERVARHFGADVRSALAARGST 243 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 +S + + + ++L D + + Sbjct: 244 GSSRAEEAQD-------------RAAQAPARGSTGSRGAEKPTERDLLATYLLADAAVLA 290 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400 + + P+ + A +E + E A+ +A + + ++ + L+ A LA Sbjct: 291 DPARPRSGGPDGTVDLEEHAGVEGELEAT-ALWVARQVLEARRPLEEIAVLVPAQDPLAG 349 Query: 401 RVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 V L R + + ++ G+P +T + + ++L A+ +A ++ L Sbjct: 350 LVADRLARLPLDGGPLPVFVAGGLPAISTAAGARILAVLRALRSHLSAETLAPVL-PALR 408 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + + + + G + L Sbjct: 409 LDGIADGERTHLTHGEAMELAFGLGIVGGNPAHPAGALAWSERAAARAGELTAALAQVHV 468 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 D + A + + + L + ++ G + R L Sbjct: 469 DDDSAERERWRLERTLKSLRAIRPALDALVGVARKLVDGAPLAAIADVLGGFLARWLLAP 528 Query: 576 WFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 G+ + + + +I + G V +++ Sbjct: 529 GEGAALAARLGEALAPACAGNLGKALSGDDALQVIEDHLLGLRVAHGRFGEPAVYVGTVA 588 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM---- 690 + L F + + GL EGV P ++P + V++ L ++ + +A Sbjct: 589 GAAGLGFGAVRVIGLCEGVLPSQPREDPVVPGVLREQLERAAPDRVVPRAEDRVAAQVHA 648 Query: 691 ------------ANGTRHLIYTRSLRENNI------------------------------ 708 A + R+ RE Sbjct: 649 LVAAVRGARDAVALSAPRVDLARTEREPGAIFIDAAAALARPHAGTGEPAEAVPDGAALR 708 Query: 709 ------------------PTIASRWLQRLLVLGGTDFFDNL------KKRGQCYLDWTRK 744 P + WL R+ + R T Sbjct: 709 RDAFRPAASAAARFRDAHPISDASWLDRVARTAPELPPEWTGAPVVDLARLASLRAPTGP 768 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKD 802 L + P P P A R S S + QL+ P RRIL D ++ Sbjct: 769 LGPSDGVFEIGGPFPPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPAGAPSLRE 828 Query: 803 PDRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP-----PH 851 D G+L H ++ ++ + + + D F+ Sbjct: 829 LDPLSFGSLLHRVVELFYREHGAAFSRREGTIGKWQTRARAVADRAFDGLLSEVPLVGEG 888 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADR 904 + R H FL ++ + + + V +P + + +H+ G+ DR Sbjct: 889 VRQKERERLHDALREFLAYDWE-GAPRRFVGVELPFGTPEAPLSVDADGETLHVHGYIDR 947 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANL 960 +D+ + G + D K+G + + D QL L A + + + KV Sbjct: 948 VDV-EGGVTLVRDLKSGKAHPRAGKEAGPTPLRDVQLGLYQLAARKLATAWKTPAKVQGA 1006 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Y + +++ + ++ + + Sbjct: 1007 -YAYASGRGEVEERAFRADAGALEQATAEW 1035 >gi|28210410|ref|NP_781354.1| ATP-dependent nuclease subunit B [Clostridium tetani E88] gi|28202847|gb|AAO35291.1| ATP-dependent nuclease subunit B [Clostridium tetani E88] Length = 1157 Score = 131 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 117/952 (12%), Positives = 262/952 (27%), Gaps = 129/952 (13%) Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMW--WLLAADFLK 189 L + + AN L+DII + E + L+ + + Sbjct: 110 TGELKIFNNAANKNGFVSTLSDIITEFKRYNLTPEMIKEYLEVAEEREDNILKGKLQDIY 169 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + + + + L E I + P ++ + Sbjct: 170 LIYSKFQDSIRKK-FIDEEENLTILADKLKESKY-FDGAYIWVDEFFNFTPQEYLVLEEL 227 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + + + + + +IK E Sbjct: 228 LLKAEKVNITLCTGGLNEGERIDNLDLFLPVKNTEEKILE---------FVKRNNIKYEK 278 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 +L + S +S + + D+ + +A NE Sbjct: 279 PIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKY----------TEDICVFQALNEYS 328 Query: 370 EAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTL 425 E A + + +N K A+IT D + + T +GI I + Sbjct: 329 EIEYTARDIIKLVRDNGFRYKDIAVITGDLEGYQSLIKAVFTEYGIPYFIDKKVEGDNNP 388 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + S L + K ++ ++ +K L E + +E L Sbjct: 389 LVIFILSSLEVLNKNWNYESVFRYLKAGLVDIKREEIDI------IENYVLANGIRGKRW 442 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 ++ K + + ++ E+ + + +++ + T K Sbjct: 443 IEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKITEPLIEFHNNIKGEITPKKMCL 502 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ + + R + +++ L +++E K N+ Sbjct: 503 ELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWDVAIGLMEQLVEVMKEEKLNSR 562 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 +I + + + + T R L + G N+GV+P +N Sbjct: 563 TLENIFKSGFEQYELGIIPPSLDQVLVSSTKRLRSHEIKALYIVGTNDGVFPSVLDENGI 622 Query: 664 LSRVMQ---SDLNLKTAEKY----IGQAAHDFEMANGTRH-LIYTRS-LRENNIPTIASR 714 LS + + + L+ A+ + + L + E S Sbjct: 623 LSDLERENLRETGLEVAKDTKSTAFEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSI 682 Query: 715 WLQRLL--------------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 + RL G + + K ++ R + + Sbjct: 683 VISRLRKIFPNLCEKSNVIKEEGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYD 742 Query: 761 PPLEAQPRT---------------------------------YSFSEIKQLINDPYAVYA 787 + + S S +++ P+A + Sbjct: 743 WFMNNKEWKEKFINISQGFNHTNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFI 802 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN--TPEINHLMKQ-----IID 840 R + D GTL H+++ + KN EI+ + + ++D Sbjct: 803 RYGMNAKERK--IYKVSTPDIGTLMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVD 860 Query: 841 SHFEK-----ENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPA------ 887 + N P + + I +E ++ + + + Sbjct: 861 EKIKDMKGSILNSSPRYKHMT-NRIKDILSKSMEVISQQISRGDFKPSAYELAFGFNGDF 919 Query: 888 ---KMAIESIG-IHLTGFADRIDLL--KSGF-VDITDYKTGDNP-KKETAQKLIDPQLSL 939 + + S ++L G DR+D L + G + I DYK+G + QL + Sbjct: 920 PPISIELSSGEKVNLIGRIDRVDKLENEDGTFIRIIDYKSGKQDFNLSDIYYGLQIQLLV 979 Query: 940 EA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 A L+ S A + Y + D + + KK+ + +E ++ Sbjct: 980 YLDALLQEIEDSAKKEVNPAGILYFNMD-----DPLISTKKEITKEEAEKEI 1026 >gi|168334043|ref|ZP_02692262.1| ATP-dependent nuclease subunit B [Epulopiscium sp. 'N.t. morphotype B'] Length = 1100 Score = 131 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 116/904 (12%), Positives = 256/904 (28%), Gaps = 147/904 (16%) Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P + ++R++ L +++ ++L + L ++ E Sbjct: 76 PILDELERIMILKKVLEDHHHELTFFTTSYNKDGFLEKINI-------------LLTNCE 122 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 L ++ ++ SK++ + + ++ AL+++ Sbjct: 123 NFGV-----TQLGDDTVEGTLKAKLADIQKISKWFYDFISTQFLTNEG-SLNALIKSLTT 176 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT-EKST 279 III G A +++ + + IV +D + N + + Sbjct: 177 T-EAYKDALIIIDGFYSFTAAQQKVLLKLHSMARQMIVTLPMDKEYLGSNQNHLYYKSYN 235 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + Q++ A I+ ++ + Sbjct: 236 TLINFEFAVPVSKQFTNAAF------------------ANKTADIQFIADNYFATHSIKQ 277 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADR 396 + ++V L N E +A + + + + A+IT + Sbjct: 278 -------------PRDSANVRLFACRNFESEIELVAQNITRFVRDDTYRYNEIAIITGNL 324 Query: 397 NLAR-RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-L 454 NL R + L ++ I + + + + +LL I + + AI + +K L Sbjct: 325 NLYRSHLTTVLGQYDIPYFLDETKTIQANPAVNFILNLLEVITQHWNLTAILSFLKSGIL 384 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 F + + + + S +++ + T+ + + Q ++ Sbjct: 385 TDFADEDIDYLENYLYEHGINYKNKWLEXWEEETDSTLINDLRTRVASIILGIEQKIIAH 444 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + + + + LV + S S+ Sbjct: 445 KHRGKILT-SNLCRILYDFLVEINFANTIRWESKSESEIEHTLSK----------NFNLA 493 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L ++ +T+ + ++++ N + I+T E V + + Sbjct: 494 LEYKHIYQTILDILDRLVDILGNQYVNIATFKSILTTCFKHEKVGTIPATQDQILVGEIP 553 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD---------LNLKTAEKYIGQAA 685 +RL + L GLNEGV+P N + S + + L G Sbjct: 554 RTRLPKQKIVFLIGLNEGVFPANPINDSLFSDMDLTANLFNANPNLYELFIYSNLYGSEL 613 Query: 686 HDFEMANG-TRHLIYTRSLRENNIP-TIASRWLQRLLVL--------GGTDFFDNLKKRG 735 + +R+L + S+ +++ T S RL + T F D + Sbjct: 614 EIYSTLIKPSRYLFASYSMGDDSGKITRPSIIFTRLKRMFTMYAPSTTATTFADQIYTSK 673 Query: 736 QCYLDWTRKLDYTTKQPHY----------------------------------KRPKPFP 761 Q + R + + Sbjct: 674 QAIIALGRAIKQNAGIATLDDSYKYALMWYMQHQPDAIVQTVNGLFFTNQQDKLQTDIAK 733 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 L + + + S I++ P A + L FK D GT+FH+++ K Sbjct: 734 KLYSNNQVTTVSRIEKFRRCPCAYFIEYGLLASERKLFKFRTP--DIGTIFHSVLEIYPK 791 Query: 822 KRINKN------TPEINHLMKQII--DSHFE--KENLPPHIDIIWRHLFHKISHSFLEHE 871 TP+ + +S + K + +S+ + Sbjct: 792 LLQAAGSTWTTITPDAQQQLVATAVSESMLQNNKLKIKNGHTKYLTKRIETMSNRAITAM 851 Query: 872 EKIQ--SSIEKIFVNIPA--------KMAIESIGIHLTGFADRID--LLKSGFVD--ITD 917 ++ + + LTG DR+D L G I D Sbjct: 852 ASQLKCGKFVPAEYEYKFNDAALPAIEIDLGETTLRLTGTIDRVDAYLTPDGDTYIKIID 911 Query: 918 YKTG 921 YK+G Sbjct: 912 YKSG 915 >gi|56461632|ref|YP_156913.1| exonuclease V gamma subunit [Idiomarina loihiensis L2TR] gi|56180642|gb|AAV83364.1| Exonuclease V gamma subunit [Idiomarina loihiensis L2TR] Length = 1155 Score = 131 bits (328), Expect = 9e-28, Method: Composition-based stats. Identities = 81/781 (10%), Positives = 200/781 (25%), Gaps = 91/781 (11%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 L + T V L T+ V + Q L+ + +G + + + Sbjct: 16 LEDLTDVAVTFTQNYPLAPLEQETVLVQSNGIAQWLKINLAQASGIAA-----MIDVTLP 70 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 ++ A + + P S + RL+ + + + S Sbjct: 71 ARFQWKAYRAVLGDDIPKTSPFDKDRLTWRLMRLLPELIEHNPHFAPLKHYTSDDSDGRK 130 Query: 145 AIWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWT 196 L+ LAD+ D W + L + + W + W Sbjct: 131 LYQLSGRLADLFDQYAVYRADWLDNWVRGQDMLEQEQPVEDEQLWQP---------ELWR 181 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVA 250 ++ + L + + T+ P +++ G + +++ + Sbjct: 182 AVSNDIGIDDYWNNRAELHQRFIDTAQALTERPAGLPPRVVVFGISSLPQQMLQVLDAIK 241 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTN----------ITSSNTTYSTHPQYSLAKLL 300 + + + + I + + LL Sbjct: 242 GYTQILLCVHNPSQYHWADIVDGKEALRQAVKASSRLKHKPELPDDPNDDELHQLAHPLL 301 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345 + D RL ++ +E + + + L D ++R Sbjct: 302 ASWGKQGRDYIRLLDLYDETLAKQEAFNTIKLELFEPHNTDHLLAQLQDDILNLRPVQET 361 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARR 401 P + + + E + L + + + ++ D N Sbjct: 362 RELWPTPNTADKSLQFHVCHSPQRELEVLHDQLLDAFAKDPELKPRDVMVMLPDVNTYAP 421 Query: 402 VKLEL-----------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + I I+ L LL + L+ Sbjct: 422 YIDAVFGRYHNRFGERDPRAIPYTIADQGERHQRPLMIALELLLQVDQLRFTQTDLFNLL 481 Query: 451 KHPLAKFGFP-----------------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 P + F ++ A+ + + + LK ++ Sbjct: 482 SVPAVQQRFDMSDDDLPQLKRWVKEAGARWGLNAEQRAQFYMPAAEETNSWWFGLKRMIA 541 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISD 552 + ++ + + E L ++ C+ + T + G S+ + Sbjct: 542 GYAMGDLADVNLENDSPWANVEPYTEVAGLSAALVGCLADVVRTLEQWWQRAQGEHSLPE 601 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W L+ E L + L L +E + + + D Sbjct: 602 WVTQGEWLLEQFFEAEEDSDRLL-LAKLSDELYQLRDICVEADNESQLRLPIFKDAWLER 660 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 +D + + + + + + R + F + + G+NE +P++T + F + Sbjct: 661 VDQQNLNQRFLAGA-VNFATLMPMRAIPFKYVCVLGMNESDYPRSTPRVDFDLMTDRYRP 719 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730 ++ M + + +N S + +L + + Sbjct: 720 GDRSRRDDDRYL-FLEAMLSARDCFYLSWVGYSAKDNSERTPSVLVAQLRDHLQQGWEVD 778 Query: 731 L 731 + Sbjct: 779 I 779 >gi|118602243|ref|YP_903458.1| hypothetical protein Rmag_0199 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567182|gb|ABL01987.1| hypothetical protein Rmag_0199 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 824 Score = 130 bits (327), Expect = 9e-28, Method: Composition-based stats. Identities = 64/432 (14%), Positives = 145/432 (33%), Gaps = 43/432 (9%) Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + + + + + IL LE+R L FD + G+ P F++ + Sbjct: 420 LTAQVIFQEQANKTNIQILDALEARGLYFDEAWILGMTNQFLPTRLNSTRFIAHDISVTH 479 Query: 673 NLKTAEKYIG--QAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 + + + A + E N ++++ +L + S L T Sbjct: 480 QIPNTDYKLITTDAKNTLESLNSLANKVVFSYALTHLGNEQLPSP-LVEFNPTINTSHIQ 538 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + + LD T + +K + + +A Sbjct: 539 KIFP-----IPLESILDTNTSYLKKPQ-----------IKLGVRILKDQMACAFKGFA-H 581 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIK------KRINKNTPEINHLMKQIIDSHF 843 L +R ++G + HN++ + + + + NT E+++L+ I++ Sbjct: 582 RLDTTSFDAPHIGINRLEQGNIIHNVLQYIYQKITSKEQLLALNTKELDNLILNKINTVL 641 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 ++ L I + + H+F+E ++ + I ++ D Sbjct: 642 KRH-LNSSFKKIEKLRLSHLIHTFIEADKLR-EDFYVLTTEQNITANIANLEFE--TRLD 697 Query: 904 RIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAA--LKAGSFSQIDCRKVANL 960 R+D + +G I DYKT + +PQL + A ++ +F ++ K+ Sbjct: 698 RLDRMSNGDKIIFDYKTSTTSISSWYGSAISEPQLPIYAITNNVQGAAFIELASNKIN-- 755 Query: 961 FYIRLKQKFKIDCITN--DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 + L + + K ++ + + L QNG + ++ + Sbjct: 756 -FKGLSKNPDSLPKQSKYKDKYQDWNKQLKIWQQTLNIASIDFQNGIT----TVLPNKNA 810 Query: 1019 NIQSEYDHLARV 1030 E+D L R+ Sbjct: 811 CNFCEFDLLCRI 822 >gi|121607641|ref|YP_995448.1| hypothetical protein Veis_0647 [Verminephrobacter eiseniae EF01-2] gi|121552281|gb|ABM56430.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 940 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 79/600 (13%), Positives = 152/600 (25%), Gaps = 65/600 (10%) Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 ++ + D + +AL + +EA A + L Sbjct: 178 AQALQADWGAAALTLAWPDAPAPAGSMAGQMPGHIALHPTRDAEDEAQRAAACVLRHLAA 237 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + AL DR L RR+ L+ + + G LSTT ++ L + L A Sbjct: 238 GRAPVALAANDRALTRRIAAHLSSSAVAVRDENGWTLSTTRAAAQLMAALEACAWNASAD 297 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 A+ +K +ALE + + + Sbjct: 298 AVLDWLK-------QAPAIDPAVLDALERALRKAGVAHWPDAAARDWSASPAGPALTAGV 350 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 R + + + + + + G+ ++ T + Sbjct: 351 ALVQGWRAGLHAPRPLAQWLQALRALLLAAGQWPRLEQDSAGSAVLAALRLQTDRQAELD 410 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 G+ + E+ + +++ KP Sbjct: 411 GW---------------------------HGAGRRMALAEFSRWASEVLEAARYKPPGMD 443 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + +L + F L+L G +E P + + L + + Sbjct: 444 AAPVVVLPLPQLLARPFAALVLPGCDEKRLPPAPDPAGQWTPAQRQAWGLPSRQTLESAQ 503 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + A T + + + + L L L G + + Sbjct: 504 RAAWHNALQTPAVDLLWRTGDEGGEPLLASALVLALQLDGLAHQGADPRCQRRVAA---- 559 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 RP P + S + L + PY +A R L L D D Sbjct: 560 -------APTARPSP-QGQALPLQRLSATAYADLRHCPYRFFALRQLGLQEADELAADID 611 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWR 857 + D G H ++ + + P+ + + E W Sbjct: 612 KRDFGNWLHAVLQHFHEALRDDPAPDDATRSARMDSAAQAVTRQQGRDEGDFLPFTAGWP 671 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI---------HLTGFADRIDLL 908 L +HE Q+ ++ L G DRID L Sbjct: 672 PLRDGYLRWLAQHE---QAGARFRQAEWHTSQPLDPDPFDPSGTLDMVQLVGTIDRIDTL 728 >gi|167751207|ref|ZP_02423334.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702] gi|167655714|gb|EDR99843.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702] Length = 1132 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 98/872 (11%), Positives = 225/872 (25%), Gaps = 157/872 (18%) Query: 157 DIIETEEKKWEDLHALKN-------EKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + ++ ++L + E+ + + + ++L E A Sbjct: 119 NELKAAGISADELTNTLHSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 177 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + I I G A + +A+ +V D + Sbjct: 178 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDENKAE- 236 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + E + + K Sbjct: 237 --------------------------------VFATCDRTERLFERGNREDIKYTRLCGK 264 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 + + + D L+ + + + + + + + EA + +R + Sbjct: 265 APRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSGEADFVCANIRKLVRSEGYRY 324 Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 A+I A V R+ + + +P+S +LL A Sbjct: 325 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 383 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 I ++ + E + + L L + + Sbjct: 384 ILRYIRSGFVRLPS------------EKNNGKTVPMTLKERHLVEQHLMEEYAECWDLKR 431 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 W + + + + +TPLV + + G + +T + Sbjct: 432 KKWDKPMPHITNASEQRVEEIRIATVTPLVEFAKSVRGIGGRELVKKFTAFLFDKVDISA 491 Query: 566 LDEHRKLPN------------LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + N + + +T+S + + + ET E+ +I Sbjct: 492 AIQGKCQDNSTRQLRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCA 551 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK-NTAKNPFLSRVMQSDL 672 ++ ++ +R + + G +G +P N + L Sbjct: 552 SRISISRTPNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRL 611 Query: 673 NLKTAEKYIGQAAH-------DFEMANGTRHLIYTRSLRENNI----PTIASRWLQRLLV 721 E +A + M L T + + N IA R+ L+ Sbjct: 612 AENDIELENDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKRFGAELIN 671 Query: 722 LGGTDFFDNLKKRGQCYLDWT---------------RKLDYTTKQP-------------- 752 + D + + L K+P Sbjct: 672 VDNLDALYMTESVKSAEKQYVINSAQLTDGQKKAVEAVLSENEKEPSSIDRIKAVMSNNS 731 Query: 753 ---HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 R P+ S + I++L +A + R + L + ++ G Sbjct: 732 GNSDIHRISDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYG 789 Query: 810 TLFHNIITELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDII 855 + H I+ + R N N + +K +I+ + EN+ + + Sbjct: 790 NIMHYIMKYCFENMYDGARENGNPHVSDGRIKDLIEQALAEYREKYLLTEENMSARFNTL 849 Query: 856 W--RHLFHKISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---I 894 + + ++ E + +S + + + + Sbjct: 850 YNALSVTAFYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQ 908 Query: 895 GIHLTGFADRIDL--LKS---GFVDITDYKTG 921 I + G DR+D+ G + + DYKTG Sbjct: 909 TITVGGTVDRVDIAYDDDKSGGQIRVIDYKTG 940 >gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 1114 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 117/1022 (11%), Positives = 238/1022 (23%), Gaps = 130/1022 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG----------KKSTILPIIKSLGDVVEEKFTADLLL 95 V T++A EL + P+ + ++ Sbjct: 83 QVLGLTFTRKAAGELGHRVRTRLDQLIRRLGRRGRDPLDDPLAGEPTVATYHSYAGRIVT 142 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + L RLL A + + E + LA L + Sbjct: 143 EHGLRAGYEPSTRLLTEASRWQ-LVDLIVRNYDGDMSEVDRMPSTVTDAVLALAGELDEH 201 Query: 156 I----DIIETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + D+ + + D+ K L + + + R + A Sbjct: 202 LVEPDDLAAWTGRFFADVQSRPGRIYADVRKALALQQTRLKLLPLV-RAYARRKDDFEAM 260 Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 R +H + + +++ + A L+ + +G V Sbjct: 261 DFADQLARAARVARDHPGVGEIERDRYRVVLLDEYQDTSHAQVVLLRALFG--DGHPVTA 318 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W + + + + S + L + E + ++ + Sbjct: 319 VGDPCQSIYGWRGASAGTLDRFPTEFVGSDGSPARVLGLTTSWRNRPEILAVANALATPL 378 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + + V +EA IA +L Sbjct: 379 RAAGARVPELHAALSVDEPIAHRSPRG------AAAGTVHCALLSTYADEADWIADSLLA 432 Query: 381 SLDENKKK---------------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 + + +A++ R+ + L G+ +++ L T Sbjct: 433 AWQGAARMPRALPEQIPVTARPTTAVLVRLRSQIPAIAAALRERGLPVEVVGLGGLLDTP 492 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L + D A+ L+ + G + + A R + D Sbjct: 493 EVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRAKAIAAARRQLADDGDP 552 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + + AT S E + L + Sbjct: 553 EIVPDRLD--EATLVEALADLGPAQAYSAEGYARLRAYARELGLLRYRLD---QSLPELI 607 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 ++ + + V L + G + ET A + + Sbjct: 608 ADIERTTGLDVEVAVRAGGEGAGDAGLARAHLDALGDVAARF---SGETPGATLAGFLAY 664 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL- 664 + G + IL ++ L +D + + GL+ GVWP + Sbjct: 665 LAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGLSRGVWPGPVRNSDHWL 724 Query: 665 -----------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 Q + AE AHD ++ TR Sbjct: 725 GGLGVLPFPLRGDADGLPELALAEAADQRAVARTMAEFTDAWRAHDEREERRLAYVAVTR 784 Query: 702 SLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 R P S L+ + +L T Sbjct: 785 PRRLLLCSGHWWGEGTKRPRGPSALLREIHDACLDGGPGHLVDEWTPEPTPDAVNPTTEV 844 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQL-----------INDPYAVYARRILKLDFIPHF 799 + P + + + +++ +DP RR L Sbjct: 845 VLRAEWPADPLGVRRPALAEAAALVRRFLTGEGGPDNSAASDPQVARWRREADLLLAERA 904 Query: 800 K-----------------------KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 + D + + T L + Sbjct: 905 ELSRLSGPIDVVLPEQLSVTQLVSLRRDPAALARTLRRPLPAEPNPYARRGTAFHAWLEQ 964 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + P ++ + I V +P I G+ Sbjct: 965 RFGADRLLDTDELPGAADEDAAPDEALAELQRRFLASEWADRTPIEVEVPFATVI--GGV 1022 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + G D + D+ D+KTG P +A+ QL++ A + +D Sbjct: 1023 VVRGRMDAVFRRPGDRFDVVDWKTGARPTGASAEVA-AVQLAVYRLAWAELAGVPVDRVG 1081 Query: 957 VA 958 A Sbjct: 1082 AA 1083 >gi|302553995|ref|ZP_07306337.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471613|gb|EFL34706.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 447 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 57/435 (13%), Positives = 113/435 (25%), Gaps = 67/435 (15%) Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA----H 686 + S+ L + +++ G+ EG+WP + L L A Sbjct: 1 MTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRL 60 Query: 687 DFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + A R L+ T + SR+L L V +R +L Sbjct: 61 FYVAATRARERLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGRPRRPLSVAALVAEL 118 Query: 746 DYTTKQPHYK----------------------RPKPFPPLEAQPRT-------------- 769 TT P RP + Sbjct: 119 RATTVDPRVSDALREAAARRLARLAALADEDGRPLVPSAHPYRWWGMFEPTESKVPLRNR 178 Query: 770 -----YSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 S S + QL N + R + G + H + E+ Sbjct: 179 DQPVVLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFGNVVHVLADEVASGH 233 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + + + + + + FL+ ++ + Sbjct: 234 TPADLSVLMERL-DSVWNALAFDAPWKSDQEKDNARV--ALERFLQWHVMDRTGRTPVAS 290 Query: 884 NIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLE 940 + +++ + + G DR++ G + D+KTG P + ++ PQL++ Sbjct: 291 EHDFDVTLDAGDYQVRIRGQMDRVEADGDGRAYVVDFKTGKQAPTGKEVERH--PQLAVY 348 Query: 941 AAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL--KNLI 995 A++ G+ + + L+Q K A E L Sbjct: 349 QLAVREGAVDDAFDGVRPEPGGAELVHLRQGAAKRDGGETLPKVQAQEPLAGEWVGDLLA 408 Query: 996 EIVTLLQNGEQPFIS 1010 + + + Sbjct: 409 TAAGKVLDERFTPTA 423 >gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] Length = 1167 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 119/1113 (10%), Positives = 262/1113 (23%), Gaps = 184/1113 (16%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR--- 61 P + S M ++ R + V T++A EL Sbjct: 56 TPRLVIAGAGSGKTATMADRVVWLVANGWVRPE--------EVLGVTFTRKAAGELASRI 107 Query: 62 -------SEFIEITGKKST----------ILPIIKSLGDVVEE-KFTADLLLSYNLNPPV 103 + P + + L L + + Sbjct: 108 RAKLVALQRVAARGAGAPMFPAGMISSDALEPKVSTYHSFASGIVSDYGLRLGVERDVVL 167 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + +LA ++ + + I LA A+ + EE Sbjct: 168 LGGAQAWQLATEVVEAYDGEYGHFRAAKSTLVK-------AVIQLAGECAEHLQE--PEE 218 Query: 164 KKWEDLHALKNEKYGMWWL-----------------LAADFLKIASKYWTERLVELNASS 206 + + L + + + + +T+ A Sbjct: 219 VEAWLMARLADYEASPYLAGKQKNPPQAAADIARLLRTRASVADMVGRYTDAKRARGALD 278 Query: 207 PVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 R A H+ + +++ + A L S + G V Sbjct: 279 FGDLVSLAARVARDVPLAAHMERQRYKVVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAV 336 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF---LDIKREDVKRLGNVSN 318 D + + + T P A+ + + + Sbjct: 337 GDPNQSIYGFRGASAGQLFHFVREFPVRTGPAEGSAQWMPAPTSYLTTAWRNGKSILAAA 396 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + S+ +++ P + P+ V L ++ EEA ++A + Sbjct: 397 NVMSESLAKAEAQRGPAGGAATAAATVPPLQPSPFAVEGRVVLGRFASDAEEAAALADDV 456 Query: 379 RMSLDENKKK----------SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + + A++ R ++ + GI ++ L T Sbjct: 457 LKYRVTDFETKPDGSSVAPALAVLCRRRAQMETIRRQFEARGIAYEVVGLGGLLVTPEVV 516 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR----AKNALELVALRGNKNSYD 484 L + L + A+ L+ + G + R G + Sbjct: 517 DLVATLRVLADPGRSDALMRLLAGARWRIGPADLMALRDWSSHLARRRGQLSAGPEGDEA 576 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 D ++ + + W R L + + L Sbjct: 577 GDDDGTVPESDLTDGASLVEALDWLPREGWTSSAG-RCLTEVARGRLHRLSVELRQLRGY 635 Query: 545 CGNL---SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 G+ + + + + ++ L + + ++ F + + Sbjct: 636 LGDDLTTLLGEVERAMLLDIEVAALPGVSIHQARRNLDAFQDAAAGFLRTSHRVDILAF- 694 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN--------EGV 653 + W++ +G P + +L S+ L +D + + GLN + Sbjct: 695 -LSWLEAAAAEENGLEAPPGDVNREAVQLLTVHASKGLEWDAVFVPGLNAGAFPTDKDSR 753 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYI---------------------GQAAHDFEMAN 692 W TA P+ R +SDL ++ + + Sbjct: 754 WSSGTAALPWPLRGDRSDLPQWDLDQPDQKGWIDAEKDFKAAVQAHGESEERRLAYVAYT 813 Query: 693 GTRHLIYTRSLRENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--- 746 +H+++ S + S +L L L + L Sbjct: 814 RAKHVLWVSSAAWVGSRSGRSTMSPFLAELETLAAPAAGSPARAGVHPLSLDEAALPENS 873 Query: 747 ------YTTKQPHYKRPKPFPPLEAQPRTYSFSE-----------IKQLINDPYAVYARR 789 P+ P P + S + +L P R+ Sbjct: 874 PLTLETEVAGWPYDPLEGPVDPRSGERLRLSGGRRASMEAAAERVLAELAKGPADFRTRQ 933 Query: 790 ------------ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR--INKNTPEINHLM 835 R +G H + ++ + + Sbjct: 934 DPAKSPGFAGPAAGWAREAALLLLRRSRRSQGQDVHLPTHISASTLVDLEEDPAAVLARL 993 Query: 836 KQIIDSHFEKENLPPHIDIIWRH-------------------------LFHKISHSFLEH 870 ++ + W + +F Sbjct: 994 RRPVPREPGMSARKGTAFHAWVEDYFGSAGMLDLGEDPGSDDHIDAAYDLDAMVETFRAS 1053 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E ++ +V +P + + + + G D + G D+ D+KTG P + Sbjct: 1054 EWAHRA---PAYVEVPVETRV--GDVVVRGRIDAVFRDADGRWDLVDWKTGRRPSGARLK 1108 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 QL+ A + V F+ Sbjct: 1109 T-RAVQLAAYRLAWAR--LKDVPLESVRAAFFY 1138 >gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1135 Score = 130 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 112/1022 (10%), Positives = 240/1022 (23%), Gaps = 124/1022 (12%) Query: 45 ASVTIYVPTKRAI----QELRSEFIEITGKK-----STILPIIKSLGDVVEEKFTADLLL 95 V T++A + +RS + G + F L+ Sbjct: 107 GQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGPDGPAPAEPAGAPTVSTYHAFAGSLIR 166 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 Y L PV RLL L + + + +L + + + + L LA+ Sbjct: 167 DYGLLLPVEPDTRLLGETELWQLAFDVVSGYRGEL--RTDKTPAAITSMVLRLWGQLAEH 224 Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLL----------------AADFLKIASKYWTERL 199 + +L L + + L R+ Sbjct: 225 LVDTRQLGDTHVELERLIHTLPAGPYQRDRGPSQWLLRLLATQTQRAELVPLLDALDARM 284 Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANH 252 + R A +G +++ + A +S + Sbjct: 285 RAAKTMDFGVQMASAARLAANFPQVGEELRGRYRVVLLDEYQDTGHAQRVALSALFGGGV 344 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 +G + D W + + +++ + + +L + Sbjct: 345 DDGLALTAVGDPIQSIYGWRGASATNLPRFATDFPRADGTPAPVLELRTSWRNPPRTLAL 404 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 +S E RS+ + PD L + ++ +D + Sbjct: 405 ANAISAEARRRSVAVRPLRPRPDAPPGTVCCALLPDVQAEREWIADE------------L 452 Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + + +A++ A + L G+ +++ L + + + + Sbjct: 453 AARYRAAQADGAGPPTAAVLVRRNADAAPIADALRARGLPVEVVGLAGLLSVPEVADVVA 512 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY------DIM 486 +L + A ++ P + G + + G + Sbjct: 513 MLRLVADPTAGAAAMRVLTGPRWRLGGRDIAALWRRARQLGEGPGGEGSPESIALAAGHD 572 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 + D +A R L H+ + LV Sbjct: 573 ADTPCLADALADPGPADGYSAAGYRRITALAAELRALRGHLGHSLPDLVAEVRRALGVDC 632 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL------------------- 587 ++ + +++ E Sbjct: 633 DVRAAAGANAGWAGTEHLDAFADVVAGYAERVELAGAADRCPTASVAGLLAFLDVAETVE 692 Query: 588 ----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 ++ + A +EW + + G +++ L L Sbjct: 693 NGLPPAPSVAARDRVQVLTVHSAKGLEWQVVAVAHLSGGVFPSAASRTTWLTDAAELPPL 752 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L + LS + + + + Sbjct: 753 LRGDRAAAGALGVPVLDVSAVTNRKQLSDTISEHRRQLDQRRVDEERRLLYVAVTRAEDT 812 Query: 698 IYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + P S +L + + Sbjct: 813 LLVSGHHWGATGIKPRGPSDFLCEIKNVIDRSAAAGAPCGVVDQWAPAPADGDPNPLRDN 872 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLIN------------DPYAVYARRILKLDFIPHFKKD 802 +P R L+ D A L + Sbjct: 873 TVEAIWPADPPAGRRGDVERGADLVARAMSGDPQENTVDVEGWAADVDALLAERARSAEP 932 Query: 803 PDRTDRGTLFHNIITELIK---------KRINKNTPEINHLMKQI----------IDSHF 843 P R G L + + +L + + P+ + L+ +S F Sbjct: 933 PSRALPGQLSVSGLVDLARDPAGAAQRLRHRLPTRPDPHALLGNAFHAWVQRFYGAESLF 992 Query: 844 EKENLPPHIDIIW--RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + +LP D + +F E + I V +P +M I + G Sbjct: 993 DLADLPGAADADIGDTPELGALRAAFTESPWAAR---TPIAVEVPFEMPIGET--LVRGR 1047 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 D + G + D+KTG+ P+ A + QL++ A + S + V F Sbjct: 1048 IDAVFADPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRLAWA--ALSGMPESSVRTAF 1105 Query: 962 YI 963 Y Sbjct: 1106 YY 1107 >gi|134097674|ref|YP_001103335.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291006367|ref|ZP_06564340.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133910297|emb|CAM00410.1| probable ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1078 Score = 130 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 117/1041 (11%), Positives = 253/1041 (24%), Gaps = 129/1041 (12%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPL-LLASVTIYVPTKRAIQELRS 62 ++ V P A T+ + N L V T++A ++L Sbjct: 19 EQAEVIAAPPEPALVVAGAGAGKTETMAARVVWLVANRLVTPERVLGLTFTRKAARQLAD 78 Query: 63 EFIEITGK--KSTILPIIKSLGDVV------------EEKFTADLLLSYNLNPPVSNIQR 108 + S +L + G++ + L+ + L PV R Sbjct: 79 RVRARLRRLAGSGLLDEVDPSGELRSTVLAGEPTVLTYHAYAGRLVGEHGLRVPVEPGAR 138 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 LL + + +DL + S + LA LA+ + + E Sbjct: 139 LLTETAAWQLAHRVVSTWTEDLDTDKVPSTV--TGYLLSLAGELAEHLVRPDDLRAHAEA 196 Query: 169 LHALKNEKYGMWWL---------------LAADFLKIASKYWTERLVELNASSPVGYQIA 213 L L + +R A Sbjct: 197 LCRTIENAPRAKRQKAELPKDLQKVVATQRLRVALLPLLAEYAQRKRREAAMDFADQMSL 256 Query: 214 LMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 AEH + G +++ + A L+ ++ V D Sbjct: 257 AAGLAAEHPEVVAGERERFGAVLLDEYQDTGHAQRVLLRSLFGQGRTMPVTSVGDPAQAI 316 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 W + + +++ + LL E ++ VS + + + Sbjct: 317 YGWRGASAANLPRFTTDFPKDSMAPARRYGLLTSFRNPPEVLRVANAVSAPLREAGLEVE 376 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 + L + + + A IA +LDEN + Sbjct: 377 ELRAKDGAEAGDIRVALADDVRQERDWV--------------ADRIAAQWHAALDENGRP 422 Query: 389 --SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +A++ R + L G+ +++ L L S L + A Sbjct: 423 PTAAVLVRRRADMADLAAALRDRGLPVEVVGLGGLLDEAEVRDLVSALRMLVDPLAGTAA 482 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 L+ + G + + G S D + L ++ Sbjct: 483 MRLLTGSRWRLGAADIAALWDRARELGERAFGAPESEDPTAAVAAALPGEHAEQAGLVDA 542 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 +E E + + + + L ++D + + ++++ Sbjct: 543 LDDPGNAERYSEPGYQRIRRLGRELANLRRRLEQPLPEL----VADVERTLLLDIESLSR 598 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 +L + + S ++++ R DG Sbjct: 599 PGGAGRIHLD-----AFADVVTDFATASPSATLPALLDYLAAAERAEDGLEPGEVEVADD 653 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR------------------VM 668 + +L ++ L ++ + L L V+P + +L + Sbjct: 654 RVQVLTVHAAKGLEWEVVALPHLVRDVFPGKRKASSWLRAVTELPARLRGDAQDLPRLDL 713 Query: 669 QSDLNLKTAEKYIGQAAHD---------------FEMANGTRHLIYT---RSLRENNIPT 710 + E AHD + + + + P Sbjct: 714 DRLQGMDRKEIVEALEAHDDEFEDRRLTEERRLLYVAVTRSERSLLLSGHWWAEGGDKPK 773 Query: 711 IASRWLQRLLV--------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 S +L +L + + + R ++ +R Sbjct: 774 GPSDFLLQLAEVVKSPDVGVVEQWSPQPPEDAPNPLAEAVRSAEWPVDPLGTRRDAVAEG 833 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRIL--------------------KLDFIPHFKKD 802 + + +AR + L + Sbjct: 834 ANLVLAALDAVDSAAPDEEDEDGWARDVDVLLAERAAAARRRDQVRLPEHLSVSQLVELA 893 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 D + + T + L + + + P Sbjct: 894 DDADALARRLRRPLPYPPNPMTRRGTAFHSWLEHRFTSTALLDFDELPGAADESATPHDD 953 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + + V +P + +E G+ + G D + G + D+KTG Sbjct: 954 LEMLQQAFLAGSWAERTPHRVEVPFETQVE--GVVVRGRMDAVFADSDGGWTVVDWKTGA 1011 Query: 923 NPKKETAQKLIDPQLSLEAAA 943 P + + + QL+ A Sbjct: 1012 VPAGDQV-RALSVQLAAYRLA 1031 >gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] Length = 1166 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 95/886 (10%), Positives = 216/886 (24%), Gaps = 83/886 (9%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 ++RL +LAR L D K LP + + + + +D + Sbjct: 282 DPVRRLQQLARAFLKTDGDPYDPAKAFKKALTDRLPDLADRYLSASSAIIETVDRLALFR 341 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 AL + + A Sbjct: 342 MLEGTAAALTIAD-------------WLIARYEVLKRGRGFLDFNDLITRTVNLLARPDA 388 Query: 224 KGT--------KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHI 266 I++ + + P ++ +A V D Sbjct: 389 GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 448 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + S + + ++ KL + + + V + R Sbjct: 449 SIYSFQGAAPDSFADSRLLFSSRVRDAEASFADLKLTWSFRSTDDVLSAVDRVFADPVVR 508 Query: 324 SMVIS--------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---EREEAI 372 + I + + + A A Sbjct: 509 RGISHDPDPLSHKAIRTDAPGYVEVWPSIGADIVDEPDDWTQAIDHAHAPAVRVAENVAT 568 Query: 373 SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +IA + R L+ + + L R I + + + L Sbjct: 569 TIAGWIGNGEIIEGRGKRLRPGDVLVLVRKRDSFVHALTRALKRRDIPVAGADRLSLPGH 628 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L +L + + D +++A +++ P+ + A+ A L + Sbjct: 629 IAVKDLIALGRLLIQPQDDLSLAAVLRSPIFDLPEETLFALAAQRAPGLSLATSLRQHAG 688 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + ++V+ ++ + + E + + I L + Sbjct: 689 ESEALAIVVAQL-----DIWTDEAAFKPVFEFYAGLLARDGVRRKMIARLGPEAGDILDE 743 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + +++ + E G + + + + +A + Sbjct: 744 FLSFCLAEERTGLPGLEAFLST----------LENAGPEIKREMDQTRDEVRVMTVHAAK 793 Query: 605 WIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 ++ + L+DG + + L + + G A+ Sbjct: 794 GLEAPVVFLVDGGSAPFSDQHLPRLMPFDGSGWVGKGYLWRSASDVANGFSKAAAARARE 853 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 L+ L + + + S+ + + G Sbjct: 854 LADDEYRRLLYVGMTRAEDRLIVCGYHGKRAPNTGTWHSIVSRALIGAPESEQRAHPAGG 913 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP--KPFPPLEAQPRTYSFSEIKQLIND 781 + ++ + L + T +P PP E PR S S LI + Sbjct: 914 EPVYRFHVTELPPVALATAEQARQTDAFGPLPTNLFRPLPPFEDLPRPLSPSGASALIEE 973 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 + + + + RG H ++ L ++ + + Sbjct: 974 GKETVVDKASPV--LDADAEPGFAVLRGLALHKLLQMLPGIAEDQREGAAARYLARTGAE 1031 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 PP I + ++ + + V I + + ++G Sbjct: 1032 ------WPPAEREKALASVIAILAD--PYLGQLFAPSSRAEVAIMGSLEVRGKNRSISGK 1083 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945 DR+ + V I DYKT QL+L A L+ Sbjct: 1084 IDRLAVTPD-AVSIVDYKTNRPAPAGLAEVPPAYLLQLALYRALLQ 1128 >gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 1080 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 108/920 (11%), Positives = 228/920 (24%), Gaps = 107/920 (11%) Query: 55 RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR 114 R E F+ P I++L D+ L + + +A Sbjct: 196 RCQTEALEAFLSRAA------PSIETLRDLAARYPGERDPAGAYLRAVEPCLAGEIAVAE 249 Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174 L + N + A ++ T+ L L Sbjct: 250 LAAVHDNSGFRKNMGQKKNWEGDDLDNLRAAYG-------VLRQCLTDHAGACSLT-LDA 301 Query: 175 EKYGMWWLLAADFLKIASKYWTERL-------VELNASSPVGYQIALMRAEAEHLM---- 223 + DFL+ + L +NA R + Sbjct: 302 AD--PFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNALDFDDLVNRTHRLFRDRGDIVET 359 Query: 224 --KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + I++ + P ++ T+ + A + D ++ Sbjct: 360 HFRSRFRFILVDEFQDTDPVQIAIIRTL--LGDSANLFVVGDPKQSIYLFREAD------ 411 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + + + L LD+ + + S +++++ P + Sbjct: 412 VTQFSHTRDLIERDLGGETVALDVNFRSTPEVVGFT--NAVFSALMAEAGRPWEFLYEPL 469 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-------------- 387 + +++ A R EA A +R ++ +K Sbjct: 470 HAFRRDDAGSVELLLCQKIRDRAAGRRAEAEMAARKIRSLVERGEKRVSRDGEVRPAGYG 529 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 A++ R + L R+G+ + AG+ L ++L + D A+ Sbjct: 530 DVAVLLERRTNLAYYEWALARYGVPYHVHAGLGFYERQEVYDLYNILRFLANNLDDAALY 589 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 +++ P F + L L+ + + Sbjct: 590 GVLRSPYFGFSDARLFHIARAPGASLWERLQAAAEPAAATLREWL-----SLSRRLPPAR 644 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 R+ +E V + V +++ + + + Sbjct: 645 LLRRIVDESGIFVVFGGMAGGEQAAANVEKLIALARDADCSTLAGFVAELGRSIDAGDRE 704 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE-TVKPKIEKSS 626 L + + S+ + ++ + D+ G T+ + Sbjct: 705 GDAPL-------DLASADSVSIMTVHAAKGLEFPVVVVPDLAETPRSGGGTIMVEDGLLL 757 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + I ++ +E + + + + + A Sbjct: 758 GVSIPNPANDHEREETPVLRLLKDEYRQKEEAERKRLFYVAVTRAEDHLILCGEMPVAVP 817 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + TR L + R L L D L Sbjct: 818 ESLRDARTRMAWLAHCLGLCDEVYA--RGEAVLGTLRIPITLDPAAIPVDVQETVPVCLP 875 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 P P P + R YS SE++ + P +P F D Sbjct: 876 VPDDVPAAPVPAGIPSNGKKERVYSASELEAYLRGPAE---------SRLPVFAAGEDAL 926 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RG + H + ++ + L P + ++ L+ + Sbjct: 927 TRGLVVHEVF-------RGRDPAA-----------VLRRYGLDPAGAVEYQELYVR---- 964 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 FL I + +P + G G DR+ +G + DYKTG Sbjct: 965 FLASPLMR--GIVRDHREVPFSARVN--GFAFRGVIDRLVQRVNGTWMLIDYKTGTPGDA 1020 Query: 927 ETAQKLIDPQLSLEAAALKA 946 Q+++ A Sbjct: 1021 GE----YAIQMAVYHRAAAQ 1036 >gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris HaA2] Length = 1161 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 95/867 (10%), Positives = 214/867 (24%), Gaps = 94/867 (10%) Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK-IASKYWTERLVELNASSP 207 A + + ++ E + E L + A + ++ E Sbjct: 313 ADPMPGFAEDLKREGARLEGLLERRRALLMRERTRALLVIAFDVAERIRREKQERGLLDY 372 Query: 208 VGYQIALMRAEAEHLMKGTK-------GPIIIAGSTGSIPATARLMSTV---------AN 251 ++ ++I + + P +++ + A Sbjct: 373 DDLIDRTLQMLDSGASSWVHFKLDRGVDHVLIDEAQDTSPKQWDIVAHLIAEFTAGEGAR 432 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLAKLLD 301 V D + K H YS Sbjct: 433 EGIKRTVFAVGDEKQSIFSFQGAVPKEFAERRDLLQRRFHGAGLAFEKVSFNYSFRSGAT 492 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKS--FLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L + + S + ++ P D+ ++ ++K Sbjct: 493 ILQSVDHVFRDPDIYRSIHADTSYPLHEALTDAGPSLIDLWPLEVPDDKQEIEGWRAPFD 552 Query: 360 ALIEADNEREEAISIAIALR--------------MSLDENKKKSALITADRNLARRVKLE 405 A+ E E A + + L+ + V Sbjct: 553 AVSETSPEVRLADKVRAEIASLIASGTMTGPRDDRRRLRYGDVLVLVRRRGSAFDAVIQA 612 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 L R GI + + + L+ + L +L +A+ D +A+A +K PL F + + Sbjct: 613 LKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGFDDDDLFRL 672 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + L++ + D+ A T V H +E+ + Sbjct: 673 AWRRK---------------GSLRAALRDKAAGDAKLTAVLHRLDTCAEQSQAETPFGFY 717 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 L + N ++ ++ +L ++ + + W + Sbjct: 718 AWLLGGDGGRARILRRLGPEANDALDEFLELALSFERK--QPPSLQGFVAWLRAADTEIK 775 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + + + ++ + + T P + L L ++ ++ Sbjct: 776 RDMEISRDEVRVMTVHGAKGLEALVVFLVDTTSSPADSQRLNLIRLPGGNAQPGAPSAMV 835 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 G R ++ ++ + + Sbjct: 836 WAGRKADD-----------PRAVEQARAAMISDTEDEYRRLLYVAMTRAADRLIVGGCMP 884 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP---- 761 N + + L+ G + ++ R + P P Sbjct: 885 GNRNDVRALSWYDLISKGLENSGLAMRAVPPPDGAVKRYCRPEDEVVETAAPDETPAAAP 944 Query: 762 ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P + L+ A A +L + RGTL H ++ Sbjct: 945 LILPNWLHRSAPALRAPDNLLRPSDAHDADHR-RLRRGESEAQRQRALQRGTLVHRLLQS 1003 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 L + + + +++ ++ + + F + Sbjct: 1004 LPDLPADARASAAARYLARNAKDWNDEDRDALAARVLQVITATRFAVVF--------APG 1055 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQ 936 + V I ++ + ++G DR+ + V I DYKT P Q Sbjct: 1056 SRAEVPIAGRLQRHGEPVLVSGQIDRLVVT-DAEVLIVDYKTNQVPPRSLAETPPAYLRQ 1114 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYI 963 L+L A L R V Sbjct: 1115 LALYRAVLARL----YPQRPVRAALLW 1137 >gi|317121623|ref|YP_004101626.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM 12885] gi|315591603|gb|ADU50899.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM 12885] Length = 1306 Score = 129 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 112/1009 (11%), Positives = 232/1009 (22%), Gaps = 168/1009 (16%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 Q L +E + G++ + S + + PPVS + + L L L Sbjct: 47 MEQALLAELGRLAGRRGFARTRVASFQRLAWWI---QQEVGGGTAPPVSELGKRLILRAL 103 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH----A 171 + L L A+ LA + + EDL Sbjct: 104 VTR-------------EAGRLKLFRQVADRPGFVDRLAVTLAELAAYGVGPEDLRSRYEQ 150 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + + + L + + + E L E P + R + + Sbjct: 151 MDRAQREGLLGVKLHDLALLLQAYQEYLAEHGLEDPAYAFDRVARQIRDS-RWLRDARVW 209 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT----------------------- 268 + G TG A R+++++ V LD Sbjct: 210 VDGFTGFTTAELRVLASLMRVAQRVEVSLCLDPDEAPWAVQGVPGPGTAPGGPSGTPGGV 269 Query: 269 --------AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 + + + + HP + A+ L L + V + Sbjct: 270 RPGRDPAMPVHRPAGKGPGAGEGRDESALFHPTWVTARQLLDLARQEGV-----GVEPAL 324 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 S ++ + V L+ A + R E + A + Sbjct: 325 TLTGRGRSLPRFRNPALAHLERELFQFPGRRFPGLADGVTLVAAPDRRAEVAAAAREMLR 384 Query: 381 SLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 E ++ + GI + + P+ ++ + L Sbjct: 385 LAREEGYRFRDMVVIVRDLETYHDLLVSACAEHGIPLFVDRRRPVGHHPLIELVRAALEV 444 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL-VLDR 495 + + A+ +K L + + + Sbjct: 445 VAGDWPYEAVFRYLKTDLVPVPRGAVDRLENYVLAFGIRGSLWYGKGRWTWRRHDSLEAD 504 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-------------------- 535 A + + + +E D + V Sbjct: 505 EAPRPEQEAELEAVNGIRDEATAHLRRFFDRVKSSRRQPVPARDLARALYALLLDLDIPA 564 Query: 536 -------------TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + +S+ + L + L L L EG Sbjct: 565 QLQRWSEEAERDGDLEAAQEHLQVWNGVSELLEQVEASLPEIHLTAGEFLRVLEAGMEGL 624 Query: 583 ---------------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 ++ + A + I + + ++ Sbjct: 625 RVGLIPPGLDQVVAGSVERSRHPSARAAFVLGATDDAFPRRIEEDAIFTDREREELAAAG 684 Query: 628 LFILGTLESRLLN---FDTLILGGLNEGVWPKNTAKNP--------FLSRVMQSDL---- 672 L + R L+ F + L + +W + +L+R M+ L Sbjct: 685 LDLGPPGRVRALHEQYFAYVALTRARDRLWVSYPLGDEEGRAVAPAWLTRRMRVLLPGLE 744 Query: 673 ----------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 + T + + Q A A + L Sbjct: 745 VSPADVPGPEGVATPAQAVDQLARLL--ACRRHRAADPAGPAAAGAGRGTAEPWAVLYQW 802 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 TD + R + ++ EA S S +++ P Sbjct: 803 AVTDPDVQPRLRKALAAVAYGNHIPPLGRDLARQLYARMAGEAWELRTSVSRLERFAACP 862 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---KNTPEINHLMKQII 839 + +A L L D G ++H ++ L +K ++ ++ Sbjct: 863 FQHFAAFGLGLRERE--VGRLDAPRLGRVYHAALSLLSRKVWEAGIDWADLSEARLEAMV 920 Query: 840 DSHFE--------KENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAKM 889 + + +I E + + + V Sbjct: 921 AECLQEIAPRLRGELAADSAYYEHLLRDAGRILTRTALRLAEHARRGTFRPLAVEADFGP 980 Query: 890 AIE------------SIGIHLTGFADRID--LLKSGFV--DITDYKTGD 922 + L G DRID ++G + DYK+ Sbjct: 981 EAGARLPFEPWELSTGERLALRGRIDRIDGARTEAGRWLIRVIDYKSSR 1029 >gi|109947353|ref|YP_664581.1| hypothetical protein Hac_0793 [Helicobacter acinonychis str. Sheeba] gi|109714574|emb|CAJ99582.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 778 Score = 129 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 63/377 (16%), Positives = 122/377 (32%), Gaps = 55/377 (14%) Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + ++ TLE+R + FD +++ NE P + FL+ ++ LNL Sbjct: 391 EANFRLDDSSGGKIRVMDTLETRGMQFDKIVIADFNESCVPNLKDCDLFLNSALRKSLNL 450 Query: 675 KTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 T H + ++ ++ + E + S L L + Sbjct: 451 PTLLDKKNLQKHYYYQLFKNSKEMVLSCIESETSKV---SNMLLELDLNLEPIKDAYTLF 507 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 D+ + + +S S + + Y I Sbjct: 508 ATSPLKDYQE--------------EDIKATIPKGFCFSASSLNTFLACKRRFYYHYIKCF 553 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 + G+L H ++ E +K + N + + Q+++ +EN P Sbjct: 554 KESSKDESSST---VGSLLHELLKEAYEKNKSPNL--LKERLIQLLE---TRENTTPKER 605 Query: 854 IIWRHLFHKISHSFLEHEEKIQSS-IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + KI +F E++ + I + + + IE GI G DRID Sbjct: 606 LDTLVAIEKI-QAFYRKEQQRFNEKITILDLERSFEEPIE--GIVFKGRIDRIDKTADNE 662 Query: 913 VDITDYK----------------TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + DYK T E A++ D Q+++ ALK + + Sbjct: 663 TILLDYKFKSDLKLDNMSKRKNLT----PTEIAKESTDYQMAIYVYALKNLGYE-----E 713 Query: 957 VANLFYIRLKQKFKIDC 973 F+ LK+ ++ Sbjct: 714 PIKAFFYDLKKGELVEE 730 >gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] Length = 1178 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 89/862 (10%), Positives = 205/862 (23%), Gaps = 80/862 (9%) Query: 114 RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHA 171 ++ + ++ L ++ ++ + LA + + +T +EDL Sbjct: 327 EMLEALEAEQQRLLALLDQRRKVATYEGTSSLLRLADAVIGHYERAKTARGYLDFEDLV- 385 Query: 172 LKNEKYGMWWLLAADFLKIASKY-WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 + A L+ + W + ++ + T Sbjct: 386 ----------VKTATLLQKSDAALWVQYKLDQGLDHILV--DEAQDTSPRQWEVVTSLAS 433 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 TG+ L V + G A+ + K+ + + Sbjct: 434 EFFAGTGARDRVRTLF-AVGDEKQSIYSFQGAVPAYFDAMRRAFSGKAEAAELEFHSVN- 491 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Q S D L + + ++ E +I Sbjct: 492 -LQLSFRSTPDVLGAVDKVFHDESAHKGLSQDVKAPVHEAIRRDPGIVDLWPLEAEAEIE 550 Query: 351 NIQKCFSDVALIEADNE-----REEAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405 + + + + R A IA +R + L+ + E Sbjct: 551 EPDDWRQPIDHVGSGSPMLKVARRIAAEIAQWMRDGTADPGDVMILVRKRGPFVEALNRE 610 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 L I S + L+ + L +L + D +++A ++K P Sbjct: 611 LKELDIPAAGSDRLVLTDHIAVQDLAALGRFLLLPEDDLSLACVLKSP---LFDLTDDDL 667 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 +R ++ A + + + +L D Sbjct: 668 LEVARETPEKVRPGTLWQMLVKRSDTSDKWKAVRAKLEDWRARADFVPPYEFYARLLGAD 727 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + + + + ++ LT+ Q+ L W + Sbjct: 728 GGRKAFRA-------RLGVEVDDVLDEFLALTIAYEQSGTPGLEGFLA--WMAAAPTEIK 778 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-GTLESRLLNFDTL 644 + + + + ++ ++ P F+ LE+ LL + Sbjct: 779 RELTNTKGMVRIMTVHGSKGLEARIVILVDPGAAPVSAIHDPAFLPRRRLENDLLPPALV 838 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 L + + + + + + + Sbjct: 839 WLPPKADR------------TPWHDAAVEALRDAQEEEYRRLLYVALTRAEDRLIVCGWE 886 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-------- 756 + L W ++ + Sbjct: 887 PKRGAHENCWYSMVSRALKPEARELTASDGAVSAWRWQKEGTAAGPEAGGAAHVSAEPGS 946 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-------DPDRTDRG 809 +P P + K+L +D +P + +RG Sbjct: 947 EEPPLPDWLSTPVRPLPKKKRLQPSRAFEAMEEKEGIDPVPAVSRLQAGRDLASWPLERG 1006 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 L H ++ L + ++Q + F + + + L+ Sbjct: 1007 RLIHRLLELLPDIAEGERLAASEAYLRQALKPEFADRSSH----------LLREVAAILD 1056 Query: 870 HEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNP 924 E +P I + + ++G DR+ +++ V I DYKT Sbjct: 1057 MPEFETLFCGHARAEVPLVGTIRASDGTEVEISGQIDRL-VVEDNRVVIVDYKTNFHPPA 1115 Query: 925 KKETAQKLIDPQLSLEAAALKA 946 QL + LK Sbjct: 1116 SVAEIPLEYRAQLCVYREMLKQ 1137 >gi|238854634|ref|ZP_04644964.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 269-3] gi|260664423|ref|ZP_05865275.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii SJ-7A-US] gi|282932975|ref|ZP_06338372.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1] gi|238832424|gb|EEQ24731.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 269-3] gi|260561488|gb|EEX27460.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii SJ-7A-US] gi|281303010|gb|EFA95215.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1] Length = 1151 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 97/760 (12%), Positives = 216/760 (28%), Gaps = 97/760 (12%) Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL- 382 S +S + T+ + + ++ +V LI+AD+ +EA +A + + Sbjct: 264 SHEQYESPVKDLTAKQLLDHYWTGDLESNEQTKPNVQLIKADSRYDEAYFVARTIYQQVS 323 Query: 383 --DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + ++ + + L + GI + + SL + Sbjct: 324 LNKFRYQDFLVLAPNLHEYETYLTPILRQNGIPFFNDLQKEMKYHPLVIFIESLQTILET 383 Query: 440 LNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + ++ L+K L F E R + LE L N Y + + Sbjct: 384 GFESASLFALLKTRLFIPAFYHDEAAFLRDVDELENFVLAHGINYYLWNRPLTSFVK--- 440 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWT 554 K ++ E ++L +++ + I K T Sbjct: 441 -IKRPVITLDKRATEIERLEKLRQVIIKELSHFIEQFKKTSEVKAGVKFFFDFLVKIGLT 499 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLI 613 K T + +D++ + ++ L +L + + + +A +++ I+ Sbjct: 500 KRLETWRKQ-AIDKNDLQASQEPKQIWDLLLNLLNDFLLINKPEEEFSASDFLRILISGF 558 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL- 672 + + + N+ + + G + P+ + FL+ + + Sbjct: 559 KEANFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSSNLPQISNTPGFLTSENLAQIS 618 Query: 673 ------NLKTAEKYIGQAAHDFEMA---NGTRHLIYTRS-LRENNIPTIASRWLQRLLVL 722 L+ ++ A + + + L N S + +L L Sbjct: 619 SADTDNALEDRQELANLDQDYQFGACLTLASNWVYVSYPFLNTANESIQPSTYYTKLQEL 678 Query: 723 GGTDFFDNLKKRGQC---------------YLDWTRKLDYTTKQPHYKRPKP-------- 759 G + + YL T K P Sbjct: 679 GARELEQADLPKEDASDILSFTTNAKASLGYLTNLSPAYQNTLLDLAKNYAPQKYSQLVK 738 Query: 760 ---------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 L T S S+++ + + L+L + + D Sbjct: 739 GRNYNNQPVNLGEQLARELYGVKLTSSVSQLETYYQNSLEYFFNYGLRLRPR--AENELD 796 Query: 805 RTDRGTLFHNIITELIK-------KRINKNTPEINHLM----KQIIDSHFEKENLPPHID 853 G FH L+K + +I + KQI ++ L + Sbjct: 797 VIQAGNYFHQTFDYLVKYAHAQQIDLATLSNDQILAALTEVRKQIHQEGSYEQLLSEPFN 856 Query: 854 IIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPA---------KMAIE-SIGIHLTG 900 K ++ + K + + + + K ++ I L G Sbjct: 857 QYLFTSLDKTVNA-VAFNWKKRMAQTPFRPAYSELAFGSGNKLAGLKFKLDQLREIDLRG 915 Query: 901 FADRIDLLK-SGFVD--ITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS-FSQIDCR 955 DR+DL + + DYK + N I Q+ L + F + Sbjct: 916 KIDRVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYLDVLAKNASFFGNESL 975 Query: 956 KVANLFYIRLKQK-FKIDCITNDKKKYSADELSEKSLKNL 994 + FY + ++ +++ + + E++ + L Sbjct: 976 DLLGAFYQTITKQVERLNKADQLDSNFLPKKALEQAKQRL 1015 >gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] Length = 1153 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 115/892 (12%), Positives = 244/892 (27%), Gaps = 113/892 (12%) Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-GMWW 181 +S + + + L + ++ L L + W Sbjct: 311 ETQDGDKALAKSLKTNFTALLQDLRSNDELREKLNE----------LRNLPQGHFDRSQW 360 Query: 182 LLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHL--------MKGTKGP 229 + L +L + + +A + A + L + Sbjct: 361 Q-LLESLTRILPALVAQLMTEFQQRGEVDFSQFSMAALDALGDGLNPTELALKLDHQLRH 419 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTN 280 I++ + + RL+ ++ A V D + Sbjct: 420 ILVDEFQDTSSSQFRLLQSLLEGWQEANRNDPNNPRTVFIVGDGMQSIYGFREANVGLFL 479 Query: 281 ITSS----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI-----SKSF 331 T P ++ + I + ++ RS + +F Sbjct: 480 EARRLGVNGVTLVDCPLHTNFRSDPT--IVEWINETFSYAFPQVENRSRGAVPHETAIAF 537 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391 P D+S + + VALIEA +D A+ Sbjct: 538 NPIDSSSEVKLFGFTGDDAQLAEAGKTVALIEAA--------------QLVDPEGS-IAI 582 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + R + + L+R G+ + + PL + + L SL A++ L D ++ L++ Sbjct: 583 LVRSRGHLKAIIPALSRAGLQWNATDIDPLLSYGTINDLLSLTKAMYNLADKVSWVALLR 642 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + + + + + V D L ++ QS Sbjct: 643 TPWVGLNNNDLFRLLSVDKAQSVWSAIG------NDEILAGLSSHGKERLGAVRLILQSA 696 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + ++ ++ I Q + T+ ++ S + + L+ E + Sbjct: 697 YGDRLRQTPRSWIEGIWQALGGAATHGASE---------SQFVGDFLNLLERFHQGELLQ 747 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 L+ + G +S S + + + ++ T ++ G P+ + S L Sbjct: 748 SLALFEQAVGGLYASSLPSDSNI-SLMTIHKSKGLEFDTVILPGLGRAPRSDDKSLLMWQ 806 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 L L +I + ++ + + E + A Sbjct: 807 EYLSDDGLESGLVISPQA-----AAGSEEDSIYTYLRSEQAASSRLEN----TRLFYVAA 857 Query: 692 NGT-RHLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + L + + + P + L + G +D Sbjct: 858 TRAVKRLYISITSSMDEKSGKAKPPSKNSLLGAAWPVLEDAVQWTDNALGNAVVDKVPAQ 917 Query: 746 -----DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 +++ ++R + A + +K + A L IP Sbjct: 918 FGMNFEHSNPGDSFERLSVAWRVPAWSF---PNPLKTFYLNEAFPVAGNDASLLNIPDLS 974 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 DP T G + H I L K+ I +DS LP ++ + Sbjct: 975 IDPLPTCVGVICHGIFEVLAKQGIGHWQQMNADKRIVWLDSLLRHHRLPASSWVLAKQQI 1034 Query: 861 HKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 K + + + + + M++ + + DRI + G + I D Sbjct: 1035 VKAVENTVSDDRGRWILSRDKQSSHTELQL-MSVSANTVR-NNILDRILTDEEGNIWIID 1092 Query: 918 YKTGDNPKK-------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 YKT E + + PQL+ L A + + Y Sbjct: 1093 YKTSTPGDTETLQQFIEKEEAIYMPQLAAYKGLLSAKL---GGSQPIRTALY 1141 >gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1136 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 129/1077 (11%), Positives = 267/1077 (24%), Gaps = 138/1077 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITG----------------------KKSTIL----PII 78 + V T++A EL + +L P I Sbjct: 73 SEVLGLTFTRKAASELAERVERHLALLHRHGLGSGAEPADAELSGASSSAGLLGEDRPRI 132 Query: 79 KSLGDVVEEKFTADLLLSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + L + + R AR++ W L +K + + Sbjct: 133 STYNAYAGSLVKDYGLRIGVEPDAGLIGDAGRYQLAARVVESWDTDLDVDVKPVTVIGAV 192 Query: 137 SLPISPANAIWL-----AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + L A+ + + D +E +E + + L + L Sbjct: 193 ADLAGALAEHLLTPHEAAEAMLRLADELEDKEPVARAKAPMAGVARVVRSLRSRAALMPL 252 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLM 246 + E + R + + + +++ + A R++ Sbjct: 253 VAQFAALKSERSVLDFADQVALAARIARDVPAVGEAERTSARVVLLDEYQDTSVAQLRML 312 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + G V D H W + S ++ + S A L Sbjct: 313 RGLFG--GGHPVTAVGDPHQGIYGWRGASAGSLLAFDTDFPRADGTPASRAHLTTSWRND 370 Query: 307 R---------------EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 R D V +E + S D++ Sbjct: 371 RAILQAANRVARALRLADEDAAPAVPDEAGESGTAGEAGAAGDEASTPPGPDLVPPLAAR 430 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 +V A + EEA +IA L + +A++ R+L V+ L G+ Sbjct: 431 PDAGRGEVRSAFAAHRPEEAATIAAFLADRWRPGRGTAAVLCRKRDLFEPVRAALEAAGV 490 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + L T + + + L A + + A+ L+ P G + + Sbjct: 491 PYQVVGLAGLLRTPEVTDVRAALQAAYDPSRGDALMRLLTGPAVALGPADLVALADAASA 550 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 V G+ ++ + I + P W S + + + + Sbjct: 551 RTVRRAGDDDAGRGGRREPAEAASIVEVLDQLPPPGWVSPSGRSLSDEGRARLVGLAAQL 610 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + + + L V + +E + + Sbjct: 611 RRIRGVAHLPMPDLVTAT-EEILGLDVEVAVHEARAGAGGRARANLDELAAVAAEFDAGA 669 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 W+D G + + +L S+ L +D +++ GL E Sbjct: 670 ALATLGAFLA---WLDAAEEHERGLEAAHVEPDPAAVQVLTVHASKGLEWDVVVVAGLTE 726 Query: 652 GVWP------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH------------- 686 G +P L ++ D++ IG H Sbjct: 727 GDFPAVDGGANGVRSSAWLTGVAELPYPLRGDVDHLPELDVIGPVTHKDMDVAREEFRSA 786 Query: 687 ------------DFEMANGTRHLIYTRSLRENNIPT--IASRWLQRLLVLGGTDFFDNLK 732 + RH++ T SR+L+ ++ G Sbjct: 787 AGERELLEERRLAYVAMTRARHVLLLTGSWWGTRKTTLTPSRFLREVVADGSAVPLPPPW 846 Query: 733 --------------------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + L L+ +P Sbjct: 847 GGTLDAAPAEAAPAEPARAMWPAEPGGATAQALRDAASGVRSWLAAGSDRLDLEPGAEPS 906 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPE 830 + ++ + A+ R + L + + R E Sbjct: 907 ARAREWLWQARALLDEREAAAGEALPADPPGHLSASAVVQLARDP-EAFARARRRPVPAE 965 Query: 831 IN------HLMKQIIDSHFEKENLPPHIDIIWR---HLFHKISHSFLEHEEKIQSSIEKI 881 N ++ HF L D+ + +FL + + I Sbjct: 966 PNPNARRGTRFHAWVEQHFAAAALLDVDDLDDEATDADLDVLRRAFLASDWAAR---TPI 1022 Query: 882 FVNIPAKMAIESIGIHLTGFADRID--LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 V + + + + D + V + D+KTG +A++ + QL+L Sbjct: 1023 AVEADVETPLRDGTL-VRCRIDAVFPGRRSGQEVHVVDWKTGTPAADRSAREAREVQLAL 1081 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 A + ++A F + + ++L + L L Sbjct: 1082 YRLAWSR--LHGVPVERIAASFVFVGADDGVVTHDAPMLSELEIEDLVGRHLAELRA 1136 >gi|289763385|ref|ZP_06522763.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289710891|gb|EFD74907.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] Length = 540 Score = 128 bits (321), Expect = 5e-27, Method: Composition-based stats. Identities = 63/515 (12%), Positives = 134/515 (26%), Gaps = 83/515 (16%) Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + G L + + S A+ ++ +T L Sbjct: 29 RWLAAKRAWWCGGCSKPPGNWKRGPPLFDITDHYVSRTSG--ASLRGLVEHVTALQLPVV 86 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ-------- 669 + + +L + +D +++ GL +G+WP + L Sbjct: 87 RPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVT 146 Query: 670 ----SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 L E+ + A + + + + + S + + Sbjct: 147 KDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADG 206 Query: 726 --DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR-----------------------PKPF 760 + L + P Sbjct: 207 DGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGAD 266 Query: 761 PPLEAQPRTYS---------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P S S ++ L + P A R + Sbjct: 267 PSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRE------LP 320 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 + G++ H + E ++ ++ + + + H + + Sbjct: 321 SAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGAQWYSAN--ELARHRAMIQ 372 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDITDYKT 920 +F++ + +S + ++ V + A+E I L G ADR++ +G + I D KT Sbjct: 373 AFVQWRAQSRSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKT 432 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 G P + + QL++ A+ G D A L Y+ + D Sbjct: 433 GKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVYVGKSGAAGVAERKQDP-- 489 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 L+ + +V L FI+ Sbjct: 490 -----LTPAARDEWRNLVRQLAAATAGPQFIARRN 519 >gi|225174501|ref|ZP_03728500.1| ATP-dependent nuclease subunit B-like protein [Dethiobacter alkaliphilus AHT 1] gi|225170286|gb|EEG79081.1| ATP-dependent nuclease subunit B-like protein [Dethiobacter alkaliphilus AHT 1] Length = 1004 Score = 128 bits (321), Expect = 5e-27, Method: Composition-based stats. Identities = 114/989 (11%), Positives = 271/989 (27%), Gaps = 156/989 (15%) Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLA------------ADFLKIASKYWTERLVE 201 +++ + E W +L + + L + + + Sbjct: 32 QLLESLSKENVPWLNLRPVTPLELATEQAKPMLLTKNITIPTEGQLLFLLEEILQQMRAN 91 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 ++ T + + G T S + + VL Sbjct: 92 SQLQYFAELHNQ---NSLTRVLYPTIKELRLTGITASQLNESSFVDPCKGQ-EIITVLTL 147 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + + W + + T ++ P Y + + LD ++ VK L + + Sbjct: 148 WEEKLSSLNW--ADAATIYNIALQTKTNSSPYYLIPEDLDLSPLELTFVKHLTSHKQIIL 205 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKI--PNIQKCFSDVALIEADNEREEAISIAIALR 379 + V++ S T+ + + P ++ ++ A + E + + Sbjct: 206 PQDPVLNHSHSHTFTTPQPTPQSPLSWLFDPQNSPQPPELTILRAYGQTNEIRQV-LRHL 264 Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + + + + I + + GIPL T L+ I + Sbjct: 265 QQENIPLDNAVVCHTSTKYIPLILTITASQNIPVTFAEGIPLGFTRPGRFTLQLIRWIEE 324 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + + L+ + + A + ++ L +L + Sbjct: 325 RYTSLILHQLMTSGDMRLTSATTQARLLRQAN--IGWERSRYIPCTESLHQSILQKA--T 380 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 ++ + E L + Q + + ++T GN+S + Sbjct: 381 AATNEGNDPYAQYLHQQAEHVSTLKQTLTQIFSRI------PDATDGNVSFPKLCRGISQ 434 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC--IKANAIEWIDIITRLIDGET 617 +G L+++ + E E + + +++D Sbjct: 435 TTSTYARISSPT--------DGLALAAIQDTLTEAAHAFSGTLPLREALRRLHQVLDTLH 486 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS---DLNL 674 K L I G ++ + + GL+ L + + +L+L Sbjct: 487 TAASPPKPGHLHITGLNQAAFTHRPVTFMVGLDANFPGSGLQDPVLLDQEREQIHPELSL 546 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL-----QRLLVLGGTDFFD 729 T E Q +++ +I + + S RL T + Sbjct: 547 LTHEPAKRQYRLARYLSSRRGQIILSYPSYDTVEGRHTSPAAILLQAHRLQTNNPTADYS 606 Query: 730 NLKKR--------------------------------------GQCYLDWTRKLDY---- 747 L++ CY L+ Sbjct: 607 ALQESLTTPAGFLAPSPDQFTTLEEWWLTTTLKNLSAHNINTVTACYPHIASGLEAHQHR 666 Query: 748 --TTKQPHYKRPKPFPPLEAQPR---TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 T P+ R P + + T S ++ + L N P+ + R +L++ + D Sbjct: 667 AGTDFTPYDGRVDPDLDRDPRISQTLTLSATQFENLANCPFGYFLRYVLRIQPPEDAEYD 726 Query: 803 P----DRTDRGTLFHNIITELIKKRINKNTPE------INHLMKQIIDSHFEKENLPPH- 851 P D RG+L H+I +++ N + P+ + + + +I+ + P Sbjct: 727 PGTWLDPLTRGSLLHDIYCTYLRQTHNPDNPQPPNKQTLLSIAEDLINQTKQTLPPPSDM 786 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-----KMAIESIG------IHLT- 899 + + + F + + + F +P + +G + L+ Sbjct: 787 VFEHEKEELLRGLEVF--WRVEESAQTKPAFFEVPFGFGQQEAEEAGLGLSEPVTVTLSD 844 Query: 900 GFADRIDL------------LKSGFVDITDYKTGDNPKKETAQ---KLIDPQLSLEA--- 941 G ++ + D+KTG E + Q +L A Sbjct: 845 GK----EIRIRGRIDRIDYGTAENLYQVWDFKTGSTYGYEEQAVFKQGRQIQHALYAFAA 900 Query: 942 -AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 A LK + + Y+ K + + + ++E+++ Sbjct: 901 EAILKQSGTDHNAKVEASG--YLFPTDKGEGQRFAR----------LQANRHQILELLSQ 948 Query: 1001 LQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + + ++ + R Sbjct: 949 GLDIVATGTFCATDDQNRCTFCDFKIVCR 977 >gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] Length = 1170 Score = 128 bits (321), Expect = 6e-27, Method: Composition-based stats. Identities = 102/883 (11%), Positives = 216/883 (24%), Gaps = 75/883 (8%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 I+RL LAR L D K LP + A + + +D + Sbjct: 284 DPIRRLQLLARAFLKTDGDPYDSAKAFKKALTDRLPDLAERYVSAASAIIETVDRLALFR 343 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 AL + + A Sbjct: 344 MLEGTRAALTIAD-------------WLIARYDVLKRSRGFLDFNDLITRTVNLLARPDA 390 Query: 224 KGT--------KGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHI 266 I++ + + P ++ + A V D Sbjct: 391 GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 450 Query: 267 PTAIWNTITEKSTNITSSNTTYSTH-PQYSLAKL------------LDFLDIKREDVKRL 313 + S + + S A L L +D D Sbjct: 451 SIYSFQGAAPDSFADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLAAVDRVFADPVVR 510 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AI 372 +S++ S ++ P + P+ D A A E A Sbjct: 511 RGISHDPDPLSHKAIRTDAPGYVEVWPSIGADVVDEPDDWAQAIDHAHAPAVRVAENVAA 570 Query: 373 SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +IA + R L+ + + L R I + + + L Sbjct: 571 TIAGWIGKGEIIEGRGKRLRPGDVLVLVRKRDSFVHALTRALKRRDIPVAGADRLSLPGH 630 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L +L + + + D +++A +++ P+ + A+ L + Sbjct: 631 IAVKDLIALGHLLLQPQDDLSLAAVLRSPIFDLPEEALFTLAAQRPPGLSLAASLRQHAG 690 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ ++ + + + ++ + P ++ + Sbjct: 691 ESERLAKIVAQLDAWADEAAFKPVFELYAGLL--ARDDVRKRMIARLGPEAGDILDEFLS 748 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 L + + + + + ++A + Sbjct: 749 FCLAEERTGLPGLEAFLSTLENAGPEIKREMDQTRD-----EVRVMTVHAAKGLEAPVVF 803 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +D + + + + + + + G + Sbjct: 804 LVDGGSAPFSDQHLPRLMSFGGSGRNFDGKGYLWRSASDVANGFSKAAATRARELADDEY 863 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 R++ + + AE + + + A T S P I R Sbjct: 864 RRLLY--VGMTRAEDRLIVCGYHGKRAPNTGTWHSIVSRALTGAPEIEQRPHPAGGEPVH 921 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 L + R+ D +P PP E PR S S LI++ Sbjct: 922 RFHVTRLPPVAVSADEQARQAD-AFGPLPATLFRPLPPFEDLPRPLSPSGASALIDEGKE 980 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + + + RG H ++ L + + + Sbjct: 981 AVVDKA--SPVLDADAEPGFAVLRGLALHKLLQVLPGIAEGERQGAAERYLARTG----- 1033 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 PP I ++ + + V I + + ++G DR Sbjct: 1034 -AAWPPSEREKALASVIAILVD--PRLGQLFALSSRAEVAIMGSLQVRGKTRSISGKIDR 1090 Query: 905 IDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALK 945 + + + V I DYKT QL+L A L+ Sbjct: 1091 LAVTAN-TVSIVDYKTNRPAPVSLAEVPPAYLLQLALYRALLQ 1132 >gi|319957660|ref|YP_004168923.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM 16511] gi|319420064|gb|ADV47174.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM 16511] Length = 787 Score = 128 bits (321), Expect = 6e-27, Method: Composition-based stats. Identities = 82/542 (15%), Positives = 167/542 (30%), Gaps = 59/542 (10%) Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + D+ + H + L + K ++ Sbjct: 297 RDRPEYRLPAALLESWNRPDEPEYRRRLAHYGLSLDVLGSLKASERCGVD--------GF 348 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + P E + L L + + + + EW+ + L + Sbjct: 349 LERFAEAKIPGFELPEPGREPRREEEPLWELRHRFQKLNAGRTLSLKEWLFLW--LEEVG 406 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 ++ + + ++G LE+R + FD +++ NEGV P ++ K+ FL ++ L Sbjct: 407 ALRLDDVRGGKVTVMGVLETRGVAFDGVVIVDFNEGVVPASSGKDRFLDSRVRHFAGLPD 466 Query: 677 AEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 H + G + + + EN +PT R+L L + G Sbjct: 467 RRDREALQKHYYARLLEGAKEAVILYATGENRLPT---RFLYELG-----------LEEG 512 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + + L + P + +S S ++ + Y R I L+ Sbjct: 513 REVAAPRKLLYDHSPLPAADADPVVEAFDPTQMRWSASRLRTWLECKRRFYYRYIEGLEE 572 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKR-INKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 + + G H ++ L ++R + +++ + E+ Sbjct: 573 KESEEL-----NEGLFLHRVLEGLFRERDHYDDPEQMSREFAILAARELERHG---SAGR 624 Query: 855 IWRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 + + S+ E K + + I+ G+ G DRID L + Sbjct: 625 YILAYWKRKLESYFREEAKRFTQGWRVESIETAVEGEID--GLRFGGRIDRIDRLGEARL 682 Query: 914 DITDYKTGDNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 DYK+G +K KL D Q+S+ L F ++ +L ++ Sbjct: 683 A-LDYKSGSIKEANRKSNLDKLTDFQMSIYDLLL-RSRFPEL------DLAFVTPLDGGS 734 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + ++K L + L L + F++ K Y L Sbjct: 735 FVPVAALEEKNV---LLLEHLGQLKQ--------TCSFVAERCEDLKRCTWCPYQLLCER 783 Query: 1031 AE 1032 E Sbjct: 784 GE 785 >gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1172 Score = 128 bits (321), Expect = 6e-27, Method: Composition-based stats. Identities = 95/883 (10%), Positives = 211/883 (23%), Gaps = 75/883 (8%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 I+RL LAR L D K LP + A + + D + Sbjct: 286 DPIRRLQLLARAFLKTDGDAYDPAKAFKRALVDRLPDLAERYLSAANAIVETTDRLALFR 345 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 AL + + A Sbjct: 346 MLEGTAAALTIAD-------------WLIARYEMLKRSRGFLDFNDLITRTVNLLARPDA 392 Query: 224 KGT--------KGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHI 266 I++ + + P ++ +A V D Sbjct: 393 GPWVQYKLDQGIDHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQ 452 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAK--------------LLDFLDIKREDVKR 312 + S + + L + + R Sbjct: 453 SIYSFQGAAPDSFADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLTAVDRVFADPAVR 512 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 G + R I + ++ + + A+ Sbjct: 513 RGISHDPDPLRHQAIRTDAPGYVEVWPSVGADVVDEPDDWTQAIDHAHAPAVRVAENVAV 572 Query: 373 SIAIAL--------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +IA + R L+ + L R I + + + L Sbjct: 573 TIAGWIGSGEIIEGRGKWLRPGDVLVLVRKRDRFVHALTRALKRRDIPVAGADRLSLPGH 632 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L +L + + + D +++A +++ P+ ++ A+ L + + Sbjct: 633 IAVKDLIALGHLLIQPQDDLSLAAVLRSPIFDLPEEALFMLAAQRPAGLSLIASLRQHAG 692 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + ++ ++ + + E + + I L + Sbjct: 693 ESERLAKIVAQV-----DIWTNEAAFKPVFEFYAALLARDGVRRKMIARLGPEAGDILDE 747 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + +++ + E+ E +T + + ++A + Sbjct: 748 FLSFCLAEERTGLPGLEAFLSTLENAGPEI--KREMDQTRDEVRVMTVHAAKGLEAPVVF 805 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +D + + + + S+ + + G + Sbjct: 806 LVDGGSAPFSDQHLPRLMPFDSSGANWDGKGYLWRSASEVANGFSKAAASRARELADDEY 865 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 R++ + + AE + + + A S P R Sbjct: 866 RRLLY--VGMTRAEDRLIVCGYHGKRAPNAGTWHSIVSRALIGAPESEQRAHPAGGEPVH 923 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 L + R+ D +P P E PR S S LI++ Sbjct: 924 RFHVTKLPPVAPSSAEQVRQAD-AFGPLPATLFRPLLPFEDLPRPLSPSGASALIDEGKQ 982 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + + + + RG H ++ L + + + Sbjct: 983 AVVDKASPV--LDADAEPGFAVQRGLALHKLLQMLPGIAEPERAGAAERYLLRTGAD--- 1037 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 PP I ++ + + V I + ++ ++G DR Sbjct: 1038 ---WPPSEREKALASVTSILAD--PGFGQLFAPSSRAEVAIMGSLEVKGKKRSISGKIDR 1092 Query: 905 IDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945 + + V I DYKT QL+L A L+ Sbjct: 1093 LAVTPD-TVSIVDYKTNRPAPATLAEVPPAYVLQLALYRALLQ 1134 >gi|254670142|emb|CBA05156.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha153] Length = 1069 Score = 128 bits (321), Expect = 6e-27, Method: Composition-based stats. Identities = 108/875 (12%), Positives = 215/875 (24%), Gaps = 80/875 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLE 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 SLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N D+ K NI + ++ A + E + L L E+ A++T + Sbjct: 311 QNLDMPSEKAGNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T +I +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + E ++ E +++ + + I I R +D E+ Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832 E + +P V+ ++ L + I I+ R + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGR--DFA 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|254776586|ref|ZP_05218102.1| helicase, UvrD/Rep family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 655 Score = 128 bits (320), Expect = 6e-27, Method: Composition-based stats. Identities = 72/657 (10%), Positives = 167/657 (25%), Gaps = 100/657 (15%) Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 +A PL+ L ++L A D L+ P+ + R L Sbjct: 20 PAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLR----RNLQ 75 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + D +L L A + + Sbjct: 76 RANAGRPPGDFAELLVEALTGTAP-------------PPGAPFRALRRVRAVLDAAGCCH 122 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + S + ++ + + +L ++ + Sbjct: 123 RDGQDPRYILWAAWHQSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYV----- 177 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 A+ ++ + L + + + +L + +D +++ GL +G+W Sbjct: 178 SRTSGASLRGLVEHVAALQLPGAGPESVATAEQVSVLSAHAALGREWDFVVIAGLQDGLW 237 Query: 655 PKNTAKNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 P + L S L E+ + AA + + + Sbjct: 238 PNTVPRGGVLGTQRLLDVLDGVSADASVRAPLLAEERRLLVAAMGRARRRLLVTAVDSDT 297 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNL--KKRGQCYLDWTRKLDYTTKQPHYKR---- 756 + + S + + G D L + Sbjct: 298 DGSDREAALPSPFCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVD 357 Query: 757 -------------------PKPFPPLEAQPRTYS---------------FSEIKQLINDP 782 P P S S ++ L + P Sbjct: 358 ELERRCAATQLARLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCP 417 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 A R D + G++ H +I + +++ E+ + + Sbjct: 418 LRWLAERHGGTDPRDLR------SAIGSVVHALI-----AQPHRSPAELVAELDRAWRHL 466 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLT 899 + +F + + ++ ++ V + + + + L Sbjct: 467 PFAAQWHSD---NELARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGREVRLR 523 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF-SQIDCRKVA 958 G DR++ +G + I D KTG P + + QL+L A+ G + + Sbjct: 524 GRVDRVERDAAGRLVIVDVKTGKTPVSKDDAQQHA-QLALYQLAVAHGLLGAAGGDAEPG 582 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 + + + + ++ D L+ + E + + FI+ Sbjct: 583 GARLVYVGKTAASGVVEREQ-----DPLTAAAADQWREALRRAADATAGPQFIARRN 634 >gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] Length = 1180 Score = 128 bits (320), Expect = 7e-27, Method: Composition-based stats. Identities = 104/823 (12%), Positives = 214/823 (26%), Gaps = 119/823 (14%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGS 238 + E + Q+ ++ ++ + Sbjct: 344 LLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRDNEKIRKELVDRHQYYMVDEYQDT 403 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 L+ + N A + D + + N T + SL + Sbjct: 404 NELQYELVMLLTNELKSANLFIVGDPKQSIYGFRDADVRVFNKTKQKIVREDGKRISLTE 463 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L V + + + + +E I ++ Sbjct: 464 NFRSLRDVIGFVNYFFSHLMGPGNENEFEVEYEALTQARHAKTNGAIEILIGQDGDPSAN 523 Query: 359 VALIEADNEREEAISIAIALRMSLDE--------NKKKSALITADRNLARRVKLELTRFG 410 + A A +R+ + A++ R ++ L G Sbjct: 524 EYKLIAQRIENMITDAAETIRVRDKDGKLSERPIQYDDIAILIRARTHLPDIEHALLEAG 583 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDF-MAIATLVKHPLAKFGFPEKYLSRAKN 469 I + GI + + LN + +D +++A +++ P E Y + Sbjct: 584 IPYLTTGGIGFYQRQEIYDIWNYLNFLNNPSDSNISLAAILRSPAFGISDAELYEISLQK 643 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + + D + I T K + + LV I+ Sbjct: 644 ETKQEKKSFWDKTLDYQGCTEQLRCAIDTLKT---------HIEFARRMPVNRLVGTIVN 694 Query: 530 ---CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 I L T K K + D + L Sbjct: 695 ETGLIGTLRTGKQGKQRWANYQKLLDLARNFDGDENRQILP------------------- 735 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + I+++DI+ E P S + I+ ++ F ++L Sbjct: 736 --------------DFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVML 781 Query: 647 GGLN-----------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------AHDF 688 L+ + + + + +++ + K + Sbjct: 782 PRLDKKGQTDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKRLFY 841 Query: 689 EMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------- 738 A LI + +LR+N+ P WL L +G D NL + Y Sbjct: 842 VGATRAEDRLILSGTLRDNSKPQQMLEWLYTHLEIGEADNLLNLDVKQDVYKNGSTIDQH 901 Query: 739 --------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 D D T + P S E+ P Sbjct: 902 FRLQIPISRTLTDTTDTDAASDETMPIEFPEDLPSALQPTEVPTALSAPELANYARCPLR 961 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 +L++ I + D D + + L++ R +T ++ ++Q ++ E Sbjct: 962 YQLENVLRIPSIKQAEPDSDENEMKNAI---LYVLMQIREPSDTQNLDTRIQQAFENFPE 1018 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + K +SFL+ E + + + + G L G DR Sbjct: 1019 IADAETELR--------KHINSFLDSELGQTA-LRASETETNQHIYADVDGHILDGRIDR 1069 Query: 905 IDLLKSGFV-DITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + ++G I Y TG + P++ L + + Sbjct: 1070 LFRDETGHWQAII-YGTG----DAQHPTVCSPEMELYSLLIHR 1107 >gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] Length = 1138 Score = 128 bits (320), Expect = 7e-27, Method: Composition-based stats. Identities = 116/907 (12%), Positives = 243/907 (26%), Gaps = 115/907 (12%) Query: 101 PPVSNIQRLLELARLI----LIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 P + + L L L+ WR + + + L +I Sbjct: 276 PDADALPQWLGLIELVFTQKQEWRKSVTVAQGFPPGKGADKKACDARK-----QQLKALI 330 Query: 157 DIIE---TEEKKWEDLHALKNEKYGM-WWLLAADF---LKIASKYWTERLVELNASSPVG 209 ++ + + D+ L W L L + S T ELN Sbjct: 331 AELQSVPGLDDQLADILQLPAADVDDSQWQLLDALFTVLPMLSAQLTLVFKELNRVDFTE 390 Query: 210 YQIALMRAEAEHLM--------KGTKGPIIIAGSTGSIPATARLMSTVANHP---NGAIV 258 +A RA I++ + A L++ + +G + Sbjct: 391 VSLAARRALGSAESPSQLAMKMDYRLSHILVDEFQDTSAAQVELLNQLTAGWVPDDGRTL 450 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + + P L +L + V + V Sbjct: 451 FCVGDAMQSIYAFRGANVGLF-LNAREQGLENVPLRCL-RLTANFRSQAGVVHWVNKVFA 508 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + S + S + N ++ + + RE A + I L Sbjct: 509 QSFPAQHSASHGAVAYAASTVVNPELPGDAVRLHGFIDDG------AGAREAAQVLDIIL 562 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 ++ K A++ R+ + L G+ PL+ T L SL A+ Sbjct: 563 SARAEQPDAKIAVLVRSRSALAAIVPALQGAGLRYRAVDLEPLAETPAVQDLLSLTRALL 622 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 D +A +++ P + Sbjct: 623 HPADRVAWLAVLRAPWCGLALTDLDALC-------------------------------- 650 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + E L + + ++ + + + W + Sbjct: 651 -RPQESKLVPTVLEQCEYALADNCLSESGAARLARVLPLLSAASEQRLRKTFRAWVE--G 707 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 L +L L + A+ + ++ ++ Sbjct: 708 CWLALGGGASLPGAASLENARMFFRLLEKWEY---------ASDLPAYRVLANAVNQLYA 758 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF---LSRVMQSDLNLK 675 P E +L ++ +S+ L FD +I+ GL + ++ + L+R +S L + Sbjct: 759 APDPEADDSLQLMTVHKSKGLQFDVVIVPGLAKRGNSRSDDLMLWQERLNRDGESQLLMA 818 Query: 676 TAEKYIGQAAHDFEMANGTR-------------HLIYTRSLRENNIPTIASRWLQRLLVL 722 + G H ++ TR+ + ++ + + L Sbjct: 819 PLTRASGGDRHANYQHLAAEAGKKMDLETCRLLYVACTRARQRLHLCFATAENSKNPQEL 878 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ----- 777 L Q + ++ +P PPL+ ++ +++ Sbjct: 879 RAPSSSSMLASIWQAVVLQVQRYPAPEIEPSATESWVAPPLQRFVAHWTPPLVERENLLL 938 Query: 778 -LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 I A+ +L++ + GTL H + + ++ + + H Sbjct: 939 GFIPPYDYDEAQNRPELEWQSVANRA--SRHLGTLVHRYLQIISEQGLEHWSRTRVHACA 996 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIES 893 + + + + P + + L+ E + + S Sbjct: 997 PAMAAGLRELGVAPALVPQLTERAGRHLARILDDERGRAILSNDYRFHASEYSLTLVTRS 1056 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ-------LSLEAAALKA 946 L DR+ +G I DYKT + + E Q + L AAL Sbjct: 1057 GPQQL--VVDRVYTDAAGVTWIVDYKTAEPAEHEALDAFFRSQQELYQPKMRLYRAALLQ 1114 Query: 947 GSFSQID 953 FSQ+ Sbjct: 1115 AGFSQVR 1121 >gi|296532163|ref|ZP_06894923.1| inactivated superfamily I helicase [Roseomonas cervicalis ATCC 49957] gi|296267511|gb|EFH13376.1| inactivated superfamily I helicase [Roseomonas cervicalis ATCC 49957] Length = 191 Score = 128 bits (320), Expect = 8e-27, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 5/193 (2%) Query: 848 LPPHIDIIWRHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 P + WR +I + E + I + +P + I + L ADR+ Sbjct: 1 ARPGLLAFWRPRLARIGGFVVAQEEAAQQGRRIRRRHAELPGHLDIAGRRVKLKVRADRL 60 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL 965 D L G + + DYKTG P + PQ+ LEAA +AG F I V+ L + RL Sbjct: 61 DELADGTIALIDYKTGTPPTGKEMTDGRAPQMPLEAAIAEAGGFQGIARAPVSGLAHWRL 120 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 + K L +L+ +V G + FI+ + + E+D Sbjct: 121 TGGGTPGEVKPVKG--DPGTLGADALEQTTALVQGFLLGHRRFIARPH-PRRRPQRGEHD 177 Query: 1026 HLARVAEWREEYD 1038 HLAR+AEW D Sbjct: 178 HLARIAEWGTAED 190 >gi|121635356|ref|YP_975601.1| exodeoxyribonuclease V [Neisseria meningitidis FAM18] gi|120867062|emb|CAM10826.1| exodeoxyribonuclease V [Neisseria meningitidis FAM18] gi|325132791|gb|EGC55471.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M6190] Length = 1069 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 101/857 (11%), Positives = 221/857 (25%), Gaps = 57/857 (6%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPH 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T +I +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + E ++ E +++ + + I I R +D E+ Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + S L L+ ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + N + +++++ + P + + + E Sbjct: 782 QD----EFIRFWRNPVKVWLQQQLAWSEP----HIGEAWEPAEPFEPQHADQIAETYIEA 833 Query: 861 HKISHSFLEHEEKIQSS 877 + F + +I + Sbjct: 834 RREGRDFAQTAARIGAE 850 >gi|326771897|ref|ZP_08231182.1| helicase, UvrD/Rep family [Actinomyces viscosus C505] gi|326638030|gb|EGE38931.1| helicase, UvrD/Rep family [Actinomyces viscosus C505] Length = 1206 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 112/1075 (10%), Positives = 273/1075 (25%), Gaps = 199/1075 (18%) Query: 46 SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + PT+ LR + + + +++ + T L + PP Sbjct: 64 DAVLLAPTRARADWLRGRAAHLLREGHGDGVV--RVRTPAALALTILTTSLTMRPAPLPP 121 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + + + + LP + L +++ Sbjct: 122 PVLLAG-----------AEEDSALASMVSTVTWPGLPAEATGSRAFRSELRNLLARAGEL 170 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTERLVELNASSPVGYQIALMRAEA 219 +DL L W A+ L+ + ER + Q + A + Sbjct: 171 GISADDLADLGRRLNVPIWGPASQLLRTWDAQGRASAERRAQTRKMDTARLQDRAVEALS 230 Query: 220 EH------LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAI 270 + +++ ATARL++ +A + A ++ D + Sbjct: 231 SWGSDAVTAPRPVPDLVLVDDYQDCTAATARLLTALATPDPDGHRAQIVVLGDPDVAVET 290 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + T + + +L + + S + + Sbjct: 291 FRGGTPSLL----VAAEDHSGLAATRLRLTTCYRGNPAIAAVIRDQSARVPVTGTTAHRQ 346 Query: 331 FLPPDTSDMRNTDILENKIPNIQK--CFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 S R++ + + ++ + V +I A + +E +A ALR+ + Sbjct: 347 TTLAPRSPARSSAGPSSGASDAERPQAVAGVEVILASSAWQEHAHVARALRLEHVHHGTA 406 Query: 387 -KKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAI------- 437 + A+I A + +L R G+ + + + L ++ L ++ A Sbjct: 407 WSQMAVIVRSAADAETLARDLRRRGVPLASRTPAVLLRAEPAAAALLDIVRAAIRDQLGG 466 Query: 438 -FKLNDFMAIATLVKHPLAK---------------FGFPEKYLSRAKNALELVALRGNKN 481 + A L+ PL + A E G Sbjct: 467 HGEPPQRDAAINLLTSPLVGLTTMDLRRLRRRLRQAQPAATPHASAAEPCEPSTSTGPAP 526 Query: 482 SY-----DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT---- 532 + +L +A + + + +L+ IL+ + Sbjct: 527 VPAVGTGPRTGGDAALLALLADPEQASGFARSLDGQPLSAQAERLLIAARILEALRSAIG 586 Query: 533 --PLVTYKTNKNSTCGNLSISDWTKLTV--TCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 P + + + S+ + L + + + T Sbjct: 587 QTPAEAPRDVEALLWAAWNASERAEAWRATALLPSASSVRTLLSEAAEHDLDVVTTLFKR 646 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 +++ + + ++ ++ ++V P+ + + ++ ++ +++ G Sbjct: 647 AEVWAERHPGQDASSFLAELDAEVLPSDSVAPQGRRPEGVAVMTPAGCAGQEWELVVVVG 706 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDL----------------------NLKTAEKYIGQAAH 686 L WP ++ + D A+ + Sbjct: 707 LERDRWPDLRLRDSLTRTGLLVDAVTGRLTTDTVAPGEGTSGTGAVAAARAQVRADERRM 766 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG---------------------- 724 + + + + S +L + G Sbjct: 767 LIMALSRASRRLLLTATAD--AEHAPSPFLTEIARSAGIALTDADGAPLLTPDTGDLTLR 824 Query: 725 ---------------TDFFDNLKKRGQCYLDWTRKLDY-------TTKQPHYKRP--KPF 760 D ++RG+ +D L P Sbjct: 825 GLVGELRHAAICGNLEMATDAERRRGRAAVDLLADLARQGVPGADPATWIGATGPTSSAP 884 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + S S+++ L P + R D G+L H + Sbjct: 885 LIAAGERIRVSPSDVEGLAACPLKWFLTRSGGSAP------ASDAQALGSLVHAVAERAE 938 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIE 879 K+ + +++ + P + + + + Sbjct: 939 KEHLRGP------ALREAFEERLTDLGYPATWQGGLAADRARAMIERLDAYLADCDALGV 992 Query: 880 KIFVNIPAKMAIESI------------------------GIHLTGFADRIDL-------- 907 + V P + ++ + ++G DR++ Sbjct: 993 RADVEQPVRADVDIPLSVLSPAVRQRAGLRIPTKGGNAVPVTISGRIDRLEHVGGLLGGE 1052 Query: 908 -------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 ++G V + D KTG + Q+ PQL+ AL + + Sbjct: 1053 SEDSAGPDRNGTVRVIDLKTGQR-VPKDVQRH--PQLATYRLALSSQGLDVVGGA 1104 >gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] Length = 1119 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 124/1073 (11%), Positives = 264/1073 (24%), Gaps = 168/1073 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLL--------- 94 + T++A EL + S L G + AD Sbjct: 62 EILGLTFTRKAASELGARIRRRLSMLSGSPALRSWDPEGTLAARLRGADPEVSTYHAYAG 121 Query: 95 ---LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 Y L PV LL L + + + + +L+ + + L Sbjct: 122 RLISDYGLLLPVEPNSTLLSETELWQLAFSLVANWPDELH--TTKVPASVTEAVLKLYGE 179 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA---------------DFLKIASKYWT 196 +A+ + I+ + DL+ + L Sbjct: 180 MAEHLVDIDDLARAGSDLYEMIPTLPKGPKQRGGPNQALLKIRDVIDERRELIPMVTALA 239 Query: 197 ERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E + E +A R + +++ + + L+ST+ Sbjct: 240 EAMREQSALDFGSQMSLAARLVVGNPEVVAAERKAFRAVLLDEYQDTGHSQRVLLSTLFG 299 Query: 252 HPNG---AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V D W + + + + + +LL Sbjct: 300 GTSRDAPVAVTAVGDPIQSIYGWRGASAANLPRFAGDFPAADGSPADRRELLTSWRNAEV 359 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 ++ +VS E+ R + +S P+ + +AL E + Sbjct: 360 VLRLANHVSAELRRRGIPVSVLRAR----------------PDAPSGSAHIALTETVVDE 403 Query: 369 EE--AISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 E A +I R + + + +A++ + + EL R GI ++ L Sbjct: 404 REWIADAIETRWRAAENDGQAPPTTAILVRRNEDSAPLAAELERRGIPAEVVGIGGLLHV 463 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNS 482 + + S L + A L+ + G + RA Sbjct: 464 PEVTDVVSTLRLMADPMAGTAAMRLLTGARWRLGAADLAALWRRAAELAAEEIAAAGGAV 523 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 L + + + T+ + + + I L + + Sbjct: 524 TSREQLDAALDAVLPTEVVDRAGIADAVVDPGDPSRYSPDGYARIRAFGAQLESLRR--R 581 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + T+ + R + E + ++ + Sbjct: 582 IGQPLPELVADVENTIGVGVEAQIRARRMRGAITGREHLDAFAEYVTRYADRRGADLPGL 641 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +++ + G + IL ++ L +D + + L ++P A+ Sbjct: 642 LAFLETAETIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVAIPHLCHNIFPGGKAETT 701 Query: 663 FLSRVMQSDLNLK------------------------------------------TAEKY 680 +L + L+ + Sbjct: 702 WLGSARELPGELRGDLAIAAEQGSAHPEGYPVLDLHAVTDRKELEDTIATYKEAIADRRL 761 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIA---SRWLQRLLVLGGTDFFDNLKKRGQC 737 + RH + + + S + LL D + G Sbjct: 762 EEDRRLLYVALTRARHDLLISAHHWSESGDKPRGGSEFFTELLTAISDAVDDPTVESGGL 821 Query: 738 YLD-WTRKLDYTTKQPHYKR--PKPFPPLEAQPRTYSFSEIKQL------INDPYAVYAR 788 +D + D P +R P+P R L D A++ Sbjct: 822 VVDVLAPEPDDGAPNPLAERVLAAPWPADPLAGRRDGVRAAADLVLAEIAARDAPALFDT 881 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI------------------NKNTPE 830 D + ++ + + + E Sbjct: 882 DGAPESDGDPDLSDEIAAWEAEVSALLVEREASNQALVEVELPTHLSVSQLVELDADEAE 941 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHL--------------------------FHKIS 864 +++ W + Sbjct: 942 FARRLRRPTPFRPNPTARRGTAFHAWVERWFGATRLLDIDELPGAADATATPDADLDALR 1001 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 +FL +S V +P + I GI + G D + G + D+KTG P Sbjct: 1002 DAFLASPWANRS---PSEVEVPFETVIA--GIVVRGRIDAVFADPDGGWTVIDWKTGVVP 1056 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 + + L QL+ A + +D + A Y+R D + ++ Sbjct: 1057 EPARRESLFI-QLAAYRIAWAQLAGVPVDRVR-AAFHYVRSGHTLAADELPDE 1107 >gi|261392060|emb|CAX49553.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis 8013] Length = 1069 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 103/882 (11%), Positives = 225/882 (25%), Gaps = 63/882 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 +I +W L+ + E ++ E +++ + + Sbjct: 526 DIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L L+ ++ Q +++ Y + RT + + Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYATAL 756 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 Q P + + + + + +D + + N + +++++ + P + Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + E + F + +I + Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850 >gi|227541922|ref|ZP_03971971.1| helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182365|gb|EEI63337.1| helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 1025 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 129/1081 (11%), Positives = 299/1081 (27%), Gaps = 182/1081 (16%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF----------IEITGKKST 73 A + + + R L + I +KR+ E Sbjct: 45 AGVTSLIRDAARARLLAGTDPDRLLIVTHSKRSALAFEEALWDDLVASRSDEENAAPYVA 104 Query: 74 ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPE 133 + +S+ + + + P RL+ A + R L + Sbjct: 105 ESKLAQSVHSLAFSIVHYAAIANNVPAP------RLMTGAEQDAVIRELLKGNQEAGGEY 158 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 P + + + A+ L D + K D+ L ++ W+ A FL+ + Sbjct: 159 WPAER-VEALDYVGFARGLRDFLLRAGERGKSAADVKKLGEQENKPLWVAAGAFLEEYTA 217 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST 248 L +++ + I +RA ++ + + + + P + +L+ Sbjct: 218 VMN--LQQMHHLNASELLITAVRALEDNPALLEKMRNRYDFLAVDNAQHLDPLSQKLVEM 275 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + H I + G + + + S T Sbjct: 276 IGEHTP--IFVVGGNTNGLVYSFRGANTDLVEDKSGKTVI-------------------- 313 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + +SF P + T + I + +V LI Sbjct: 314 -----------------TLEQSFRRPSDKRIIYTHTAGDNFSVIARELREVHLI------ 350 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHS 427 D + +IT + ++ L + + S + L Sbjct: 351 -------------RDIPWEDMVVITRSLSQIPALQRALATADVPVHIDSTDVVLVEQSIV 397 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + ++ + I L P+ L R + Sbjct: 398 QAMLQAVDIVMGNGTEEDIIELATGPIGG--ADPITLRRIQRE----------------- 438 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + +RL E+ + + L I + + + Sbjct: 439 -----IGELGPVVRGAARVAEDARLGEQAESVLAHLSAVIQTGREAVERGDSLELILWSI 493 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + + + +L E ++ + + ++ + +I+ Sbjct: 494 WEATGLSTSKMYTALRGVPAAAQANRDLNAMMELFDVAGDYVERVKQP-----SLEGFIE 548 Query: 608 IITRLIDGETVKPKIEKSS-TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 +T V+ + + + +L + ++T+IL G ++ WP + Sbjct: 549 HLTSQDLPTGVRERQVVAPKAVALLTAHGAIDDEWNTVILAGADDDSWPSLGLTGTIFDQ 608 Query: 667 VMQSDLNLK----------TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT---IAS 713 DL + E+ + + + + ++ + S Sbjct: 609 EELVDLIDENVDPDAYIDRLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPS 668 Query: 714 RWLQRL------------------------------LVLGGTDFFDNLKKRGQCYLDWTR 743 R++++L L D D K+ L Sbjct: 669 RFVRKLEEDETFSVSTVVETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLA 728 Query: 744 -----KLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDFIP 797 + D T P E + S S+++ + P + + Sbjct: 729 DAGFSEADPTNWWGLAGPTDAQPLREPRQPATLSPSQVESGLQCPLKMVLNSV------- 781 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 + G L H + + + ++ T + + ++D++ +PP + Sbjct: 782 TPTESSSALREGNLLHALAEASVTLQQDEETWKEAEQL--VLDAYLSSRTVPPWKEKADE 839 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLLKSGFV 913 F ++ ++ + + + + V IP +A+ + IH+ G DR+ G + Sbjct: 840 EEFVEVMNATVSKMTNLAGDL--VGVEIPMDVAVGQLDDGSPIHIKGRLDRVHRDSEGRM 897 Query: 914 DITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR-LKQKFKI 971 + D KTG P + A+ PQ+++ + + V + L+ Sbjct: 898 KVYDLKTGRSAPTYQEAESH--PQMAVYQLGINHSRIQENPLEFVTDDGSGGALQSGGAE 955 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 KK S L+E + + L++ + L + L K Y + + Sbjct: 956 LVYPRSTKKPSQKPLTEDNARILMDNLRQLVHHTSGST-VPALPNKHCGSCAYRIICPIT 1014 Query: 1032 E 1032 E Sbjct: 1015 E 1015 >gi|296272006|ref|YP_003654637.1| hypothetical protein Arnit_0466 [Arcobacter nitrofigilis DSM 7299] gi|296096181|gb|ADG92131.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299] Length = 786 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 63/335 (18%), Positives = 131/335 (39%), Gaps = 25/335 (7%) Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 S + ++G LE+R + F+ +I+ NE PK++ K+ FLS +++ + L T + Sbjct: 415 SGLITVMGLLETRAVEFEAVIICDFNENYIPKSSIKDKFLSSIIKKRVKLPTQKDRENLQ 474 Query: 685 AHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + ++L + + E SR+ L + + + L + Sbjct: 475 KYYYYRLMNKAKNLYISYTQNETM---QVSRFADELFKDEINPSTKDKQYK--QILYKNK 529 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 +++ + Y+ ++ + +S + +K+ + Y I K+ P Sbjct: 530 SIEHFNETIEYE-------IDLSKQEWSATSLKKYLECKRKYYLEYICKIKEHN-ISLKP 581 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + G++ H + K ++ ++ ++I S FEK+ ++ + +F + Sbjct: 582 KGFELGSMVHKTLESAYKSF------QVQNINYELIKSLFEKQMNENPFLLLDKEIFLRK 635 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-- 921 + F+E E K + I + GI L G DRID + DYKT Sbjct: 636 LNIFVEFENKRFEDKNLSVLEIEKDFKFDYNGIVLKGSIDRIDKQDD-KYLLIDYKTSAS 694 Query: 922 -DNPKKETAQKLIDPQLSLEAAA-LKAGSFSQIDC 954 +T + +D QL A L+ + +I Sbjct: 695 LKIDSIKTYENSVDFQLEFYYLACLELFGYDKIKA 729 Score = 43.4 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 51/162 (31%), Gaps = 25/162 (15%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + I PT RA +R + ++ +LP ++ + +++ + + Sbjct: 5 SKILIVFPTSRA---IRESIKRRS-NENLLLPSYLTIDEFLKKSISIKNKKY------ID 54 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 QR L L D+ S L + + + + + L + E+ Sbjct: 55 EEQRFLYL------------KNASDIKNLSKLGISNNFTSFLKQSDYLFRFFGELAAEKV 102 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 + + + + ++ LK + L N Sbjct: 103 SIDSIDEVDTYE---YYKEHISILKKIYNNYVTILDTNNVVD 141 >gi|269793284|ref|YP_003318188.1| hypothetical protein Taci_1692 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100919|gb|ACZ19906.1| hypothetical protein Taci_1692 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 972 Score = 127 bits (319), Expect = 1e-26, Method: Composition-based stats. Identities = 118/844 (13%), Positives = 236/844 (27%), Gaps = 128/844 (15%) Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + + + + TH Q +L +LL L + + N+ Sbjct: 182 PTMTSRLLRLMGSPNLRLALVGFLSFTHGQLNLVRLLRELGCELCLLIPWVNLEGVPDCA 241 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 + + + P + +L + + + RE A+ + R+ Sbjct: 242 LQMGIDAAMAPHSPPPSCQALLGLDPHHQYEALA----------RELALLGSPHCRLDFS 291 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + A+ + +L RRV+ ELTR + I G LS +L +L LNA F Sbjct: 292 GPLDQVAISVPEEDL-RRVRWELTRHDVPFWIQGGTSLSESLAFRVLMLALNAARSRWAF 350 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 L+ + + ++ + RG Sbjct: 351 RPTLRLLS---------ALHPRQVRSEVISTRPRGR------------------------ 377 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITP----LVTYKTNKNSTCGNLSISDWTKLTVT 559 W L +E + + P + + + Sbjct: 378 --DQWLEALKGPLREAFESISRRADSFLEPPGLTPGEAMDQAQGIMEAVDLFQLARGL-Q 434 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 ++ L ++ + S + E + + E I + Sbjct: 435 DRPHMDWTIRAMGSALEEAQKRRFALSRGQDLGEAFRE-RLDGQEAIQFLAAWGASSYTA 493 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT--- 676 + + + L + LIL G ++ WP ++ L + LN Sbjct: 494 QEQPLQGAVRVYRGNPPVLADHRCLILCGADQSRWPGKLRESATLGEESRRRLNRTDWAS 553 Query: 677 -----------AEKYIGQAAHDFEMANGTRH-LIYTRSLRE-NNIPTIASRWLQRLLVLG 723 E+ + A F +A R L+ +R + + PT S + L +G Sbjct: 554 QGLNPTHLVEIHERRAEKEALFFRLALTARDLLVLSRPVNDREGRPTSKSPFEGSLHRVG 613 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ---PRTYSFSEIKQLIN 780 + R + +R P L + P S++ Sbjct: 614 IREPVPMNPTPSLLDSPPIRGIHLENPWDPPRRTGPLELLADRVQLPTKVRLSQLDTFSQ 673 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P+A IL+L + TL H+ + L + TP + + + ++ Sbjct: 674 CPFAFACEAILELKIQD--RDPASSVSLSTLAHHGLQLLGEALSKGATPVVERCLLEAME 731 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---GIH 897 N P + R L + L+ + ++ ++ ++ + I + Sbjct: 732 GSGVDLNAPRFMRQ--RALLSDLLDRCLQWLYARREGLKDRLIDTLWEVELPPIRRTNLV 789 Query: 898 LTGFADRID--LLKSGFV--DITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ-- 951 +G AD +D L+ V I D+K G Q + A++ Sbjct: 790 TSGRADMVDLIRLEGQQVGAFIVDFKWG----NSDGYSH-SLQPGAYSLAIQESHVLGDR 844 Query: 952 ---------------------IDCRKVANLF-----------YIRLKQKFKIDCITNDKK 979 ++V Y + K + + Sbjct: 845 VDVQVLGCGIVSFREMLNQRRFRRKEVGRGSHGGRKGFLENCYWLIPNGAKAEVDGKKGR 904 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE---WREE 1036 D + + + L E+ + L G K + +Y L R E W Sbjct: 905 LGDLDLALKLAGRALDELDSALGKGVFA----ADYGSKRCDRCQYQGLCRRLEEGRWLSR 960 Query: 1037 YDIS 1040 D+S Sbjct: 961 EDLS 964 >gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] Length = 1135 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 87/948 (9%), Positives = 235/948 (24%), Gaps = 98/948 (10%) Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES-------PLSLPISPANAIW 147 + +L P + + L + ++L + S L + Sbjct: 223 AALDLIPQFPSAEG---LTKAQAGHVDRLQEAFLSPPSPSGPNEYMDWLIGVMPKRTDKK 279 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA------DFLKIASKYWTERLVE 201 + + + + E K +D + + + D L + Sbjct: 280 WQEAIPALFQLFEEHWKPLKDDWKAVGGEVEIDEAASLLLGRFIDLLCDFHLAYKREKEL 339 Query: 202 LNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 Q + ++ +++ + ++ + N + Sbjct: 340 RGVVDFSDLQQKAVSLLENKEIQEACQKQFRHMLVDEFQDTNRLQLEMLERI----NPSY 395 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 D + + N + + + ++I K + + Sbjct: 396 RFIVGDTKQSIYRFRGANVRLMNELEQDAVEQENAEAI------EMNINYRTCKPIIDGV 449 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 N ++ +M + + + + Q + E D E ++A Sbjct: 450 NALFQSAMTDHITESYQTRYAALSANREAEQPDQKQMELLLLNKEETDEEAGSYEALAHR 509 Query: 378 LRM--------------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 + K A++ R +++ ++ I + GI Sbjct: 510 INEMITSQQPRVFKGESWQAPAFKDMAVLIPARTDLLKLERAFSKQNIPYTVYGGIGFYE 569 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE----KYLSRAKNALELVALRGN 479 +LL + + + + + +L++ PL + A + + + Sbjct: 570 RQEIIDFLTLLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKEATQSFADYLYQLS 629 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLVDHILQCITPLVTYK 538 ++ S L + W D +++ + + Sbjct: 630 ESMPQTGLADSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFDRMIKETGLVHSLL 689 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 N ++ ++ + + + + + + + + + Sbjct: 690 IQSNGLQKVKNVEKLIQMIEQSHLRSLEEIIHFIDERMALNDKEGEAEMERTEGDAVNIM 749 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +A + ++ + + G S + I+ L E Sbjct: 750 TIHASKGLEFPIVYLPQLER----------SVQGDKGSVRFDAKLGIVWSLEEETDNLEA 799 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 ++ + E + A + + ++ Sbjct: 800 RPKKLVTPGFELVKEAAGLESEEESKRLFYVAATRAKD-YLVMIGNGDGAKKSWLHLIEE 858 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 G + + + L + + + S SEI Sbjct: 859 ARDCGPLEDYITVVNEISEQLPHHAENHLYKGTELAAKKEVL-------YPLSVSEIMTF 911 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDR-----------TDRGTLFHNIITELIKKRINKN 827 I+ P Y + +L ++ + D D GTL H + Sbjct: 912 IHQPEEYYEKYVLGVNESRRLRSDADADQETRVQQVDPAVVGTLVHRACE---LRDYGFG 968 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E +D + ++ + L E + + Sbjct: 969 AQEAVTEAMNYVDELNDTASVKVSYEQEVSELMETY------SEAQQTELGTPVENEWSF 1022 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 I + G D++ + + G + I D+KT + D QL L A + Sbjct: 1023 ATEIAGAEV--IGEIDKV-VERDGCLHIIDFKTNRIKRSGSEWLAVYDVQLYLYKMAYEQ 1079 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 ++ + L+ K K + +++ +K+++ L Sbjct: 1080 E-----TGHTISTMSLYVLRDKEKPLHTIHVEEEKEVS--IKKAIQRL 1120 >gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] Length = 1128 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 98/1006 (9%), Positives = 239/1006 (23%), Gaps = 140/1006 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 V T +A EL + G+ + ++P + + A + + Sbjct: 72 QVLGLTFTNKAAAELAERVRKRLGQLAASGLIPPELLDHEPAVSTYHAYAARLFTDHALR 131 Query: 104 SNIQRLLELARLILIW--RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DI 158 ++ + LA + W ++ + L+ P A + LA LA+ + D Sbjct: 132 DGLEPAMRLATPAVAWQLAAQVVGQYDGPMDKVDLTPPSVTAAVLELAGELAEHLCEPDD 191 Query: 159 IETEEKKWEDLHALKNEKYGM------WWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 + + D A K + L + + E Sbjct: 192 VRGFGRWLRDRFAELPGKPIAAQRKVIERQEVREQLLPLVEAYQRLKRERGLLDHGDQVA 251 Query: 213 ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 R H + +G +++ + A L+ + G V D Sbjct: 252 LAARIALRHPEVGAVERGRYAVVLLDEYQDTSHAQLELLRALYG--GGHPVTAVGDPCQS 309 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQY-------SLAKLLDFLDIKREDVKRLGN----- 315 W + + + T S L + + L Sbjct: 310 IYGWRGASAGNLLRFPGHFPTRTGEPAPVKCLSVSFRNGERVLGVAARIQEPLRAEAREV 369 Query: 316 ----VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 GR V+ + +++ + + +L A E Sbjct: 370 PVLTPGPNRRGRGRVVCAFHRTAEEEAEWIAGLVDGLLRGEGAAAAGSSLGVAVPR--EG 427 Query: 372 ISIAIALRMSLDENKKKS------ALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 + + + + A++ R+ ++ L GI +++ L Sbjct: 428 APDGLPWPEGERDPDRPAVSPKDIAILVRKRSQFAALRRALEDRGIPVEVVGLGGLLMVP 487 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYD 484 + + + L A++ A+ L+ P + G + L G + Sbjct: 488 EVADIVATLRALYDPTAGDALLRLLAGPRWRIGPADLKTLGDLARELTKELREGRREGDP 547 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + + + + + + A + + + L + Sbjct: 548 LENAVAELAEEQGNLIDALDELPDRPDWLARFSPRARERLPALALELRALRAHAGRPLPE 607 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 I + + ++ + + + + + ++ Sbjct: 608 L----IGEVERRLRLDIEVAAKGGNPLAARADLDAFLDIAARFAGESEDGTLGAFLAYLK 663 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT------ 658 + + E T+ ++ ++ L + +I+ GL++ K Sbjct: 664 AAETEEFGLKTAEAGQVGET-DTVKLMTVHMAKGLEWPVVIVPGLSQATTQKGWVTKGSL 722 Query: 659 -----------------------------AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + P L R + + + + Sbjct: 723 FPAAPVTNPRWTENPRKLPYPLRGDRTDLPRLPSLERDALTAFEEDCRTRDLLEERRLAY 782 Query: 690 MANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLG----------------------- 723 +A H + S ++ P S +L+ + G Sbjct: 783 VAVTRAHYLLVASGFRWGTSSRPLEPSMFLEEIRAKGAEVARWWDGDEEENPLLADPPRA 842 Query: 724 -------------------GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + D T P + Sbjct: 843 DWPQVGVPDPVREGARLVEEALAARAEQDAAGAERDAAEAERDTAGAVFADPVGDLSPED 902 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------KKDPDRTDRGTLFHNIITE 818 + + + L+ + + R ++ D + Sbjct: 903 RERMRAWARDTELLLRERAEHHHRAGQVVELPDRLTVSSLVTLAADPVAFAQSVRRPLPR 962 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + T L + E+ P + ++ E + Sbjct: 963 KPAPHARRGTAFHRWLETRWGQQRLLDESDLPGA-ADEQSGDADLAELQELFERSEWARR 1021 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 + +P +M I + G D + G + D++TG P Sbjct: 1022 TPVDQEVPFQMVIGDR--LVRGRMDAVFREGDG-YVVVDWRTGRRP 1064 >gi|332686493|ref|YP_004456267.1| ATP-dependent nuclease subunit B [Melissococcus plutonius ATCC 35311] gi|332370502|dbj|BAK21458.1| ATP-dependent nuclease, subunit B [Melissococcus plutonius ATCC 35311] Length = 1202 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 115/979 (11%), Positives = 252/979 (25%), Gaps = 155/979 (15%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-ANAIWLAKNLAD---IIDIIETEE 163 +LL A +++R L + ++L + + D ID ++T Sbjct: 90 KLLPEAGAAMLFRQVLLENEQELQIFQGEITKEGFIQQLFVFYQEIQDGNITIDELDTF- 148 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 L L + L + + E+ + ++ ++L Sbjct: 149 -----LTQLDKGAKEQELQIKLKDLALIFTKFEEKAKNYQFDT-----KKIVENLTKYLT 198 Query: 224 KGTKGPI--IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + +I+G L+ + + LD ++ + + Sbjct: 199 NQNLSHVSFLISGFHQFTAKELELICLLIKKAGEVKISLPLDRSYTNSLPEPMDIFAETG 258 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 T Y + + Y + + Sbjct: 259 TLY---------YQFYQFARTNRVPLFTD----------YVVNESSLIPTTGICQLENYW 299 Query: 342 TDILENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 + P +Q+ D V + + +N +EE +S+A +R + E K LIT D Sbjct: 300 IAAQKQYFPKMQQQILDNCVQIWKGENVKEEILSVACEIRRLVAEEGYRYKDIQLITRDM 359 Query: 397 N-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +K L + I I + + + S + I ++ L Sbjct: 360 ACYENLLKPLLALYDIPIYLDHDQTMEQHPLVEWIQSFFAIYNYNYRYRDILRFLRTELF 419 Query: 456 KFGFPE---------KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + +N +++ Y+ H Sbjct: 420 FPKENQKWETIEQWQAACREWRNKVDITENVVLAYGYEGTYWSRKQDWSFIQYDFEEHKL 479 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI--SDWTKLTVTCLQNV 564 ++ E+ E+ + ++ C L K + K + + Sbjct: 480 ENTKQIEEDSNEIRQKVQKYLPVCFKKLKKAKNGLEAAKIFHHFLIESGVKYQMNQWRIQ 539 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 ++ E+ L +L + +E + +I T + G Sbjct: 540 AIEAGNLEEAKNHEQVWTALMTLLDEYVEIYKNEPFFFETFQEIFTSGLAGINYSRIPAT 599 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + +R + GL E +PK LS + ++L A+ Sbjct: 600 IDQVQVRLIDLTRAAAAKVIFAIGLTEEAFPKKIENKTLLSDEERQLIDLYLADDQFLAN 659 Query: 685 AH----------DFEMANGTRH-LIYTR-SLRENNIPTIASRWLQRLLVL---------- 722 + ++M L T ++ S +++ + Sbjct: 660 STEKKIAQEPFIAYKMLVSATEKLYLTYHCTKDTKQEIKCSPYIRNIQQAFMLPIIEKRE 719 Query: 723 -GGTDFFDNLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPKPFPPLE 764 TD Y +L ++ ++P+ Sbjct: 720 GLPTDDEAISLTHIGTYPALIGELTRLKRQNQEIGEPVSGFWLAMEKALTRQPEISQTAS 779 Query: 765 AQPRTY------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + S S+++ + + + + L L Sbjct: 780 FVFSSLGYTNNPENLTETFAEALYGKHIYTSISQMEAFHHCQFQYFLQFGLNLKER--LL 837 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLPP------- 850 G FH + + K I +N + + D+ P Sbjct: 838 FQLTSAATGEFFHEALDQFFKLLIRQNKYLPDLTDEEVANFSDNVLTAVLDEPKFSILTS 897 Query: 851 -----HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA------------KMAIES 893 ++ K+ S+ ++ +S + I ++A+E Sbjct: 898 SNRMNYLRYQLSQTIKKV--SWALKKQSQKSGFSTVQTEILFGQLAIQQGIPGLELALEK 955 Query: 894 IG-IHLTGFADRIDLL--KSGFVD--ITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAG 947 G I + G DR+D L V + DYK+ + Q+ Sbjct: 956 QGKISVRGKIDRVDQLITNDHEVYLGVIDYKSSHRKFNITEVYYGLAMQMLTYLDVALMD 1015 Query: 948 SFSQIDC-RKVANLFYIRL 965 + + K A FY+ + Sbjct: 1016 AVQLVGKTAKPAGSFYLHV 1034 >gi|291531718|emb|CBK97303.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum 70/3] Length = 1132 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 92/872 (10%), Positives = 217/872 (24%), Gaps = 157/872 (18%) Query: 157 DIIETEEKKWEDLHALK-------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + ++ ++L E+ + + + ++L E A Sbjct: 119 NELKAAGISADELTKTLYSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 177 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + I I G A + +A+ +V D + Sbjct: 178 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDGNKAE- 236 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + E + + K Sbjct: 237 --------------------------------VFATCDRTERLFERGNREDIKHTRLCGK 264 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--- 386 + + + + L+ + + + + + + EA + +R + Sbjct: 265 APRYKNGNLKALRNFLQTGVKDSTAGSDGITMAYSSSVSGEADFVCANIRKLVRSEGYRY 324 Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 A+I A V R+ + + +P+S +LL A Sbjct: 325 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 383 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 I ++ + E + + L L + + Sbjct: 384 ILRYIRSGFVRLPS------------EKNNGKTVPMTLKERHLVEQHLMEEYAECWDLKR 431 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 W + + + + +TPLV + + G + +T + Sbjct: 432 KKWDKPMPHITNASEQRVEEIRIATVTPLVEFAKSVRGIGGRELVKKFTAFLFDKVDISA 491 Query: 566 LDEHRKLPN------------LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + N + + +T+S + + + ET E+ +I Sbjct: 492 AIQGKCQDNSTRELRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCA 551 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK-NTAKNPFLSRVMQSDL 672 ++ ++ +R + + G +G +P N + L Sbjct: 552 SRISISRTPNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRL 611 Query: 673 NLKTAEKYIGQAAH-------DFEMANGTRHLIYTRSLRENNI----------------- 708 E +A + M L T + + N Sbjct: 612 AENDIELENDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKHFGAKLIN 671 Query: 709 ----------PTIAS---------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 ++ S L +K + + Sbjct: 672 VDNLDALYMTESVKSAEKQYVINNSRLTDGQKKAVEAVLSENEKESSSIGRIKAVMSNNS 731 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 R P+ S + I++L +A + R + L + ++ G Sbjct: 732 GNSDIHRISDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYG 789 Query: 810 TLFHNIITELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDII 855 + H I+ + R N N + +K +I+ + EN+ + + Sbjct: 790 NIMHYIMKYCFENMYDGARENGNPHVSDDRIKDLIEQALAEYREKYLLTEENMSARFNTL 849 Query: 856 W--RHLFHKISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---I 894 + + ++ E + +S + + + + Sbjct: 850 YNALSVTAFYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQ 908 Query: 895 GIHLTGFADRIDLL-----KSGFVDITDYKTG 921 I + G DR+D+ G + + DYKTG Sbjct: 909 TITVGGTVDRVDIAYNDDKSGGQIRVIDYKTG 940 >gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 1123 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 89/770 (11%), Positives = 188/770 (24%), Gaps = 99/770 (12%) Query: 226 TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 I++ + + RL+ + +G + D + Sbjct: 401 RLNHILVDEFQDTSASQYRLLRKLTAGWQPGDGRTLFVVGDPMQSIYRFRQAEVGLFLQA 460 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 Q L+ L + V S V + + Sbjct: 461 RQ--------QGIGNVQLEPLSLSVNFRSTAAIVHWNNQIFSRVFPAVEEISSGAIAYSA 512 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALITADRNLARR 401 + C L+ +EEA +I + + A++ +R Sbjct: 513 SSAFHGEAEGPDCAVQAHLLPTAKAQEEARAILACIEDIRSRHPGETIAILARNRTHLDE 572 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + L + PL+ + L + A+ D +A L++ P + Sbjct: 573 IISLLKGGATSFSAIDIAPLAHSGAVRDLQIITRALCHPGDSIAWLALLRAPWCGLTLAD 632 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 L A D ++L Q+RL L Sbjct: 633 LQLLTAGA-----------------DGRTLWQCLQEATCVEPLSADGQARLLRIRPALIQ 675 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + Q + V + L + L + E P + Sbjct: 676 AMEERGRQGLARWVEGTWRQLGGPAFLERPAQLEDARVFLHILHSLEEEPFPEIQH---- 731 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + S+L ++ +++ L F Sbjct: 732 ---------------------------MEEALASVYCSEDPSADSSLQLMTIHKAKGLEF 764 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQS-------DLNLKTAEKYIGQAAHDFEMANGT 694 D +I+ GL G ++ + +S + + ++ + Sbjct: 765 DHVIIPGLCGGSRSESKPLLAWHEGPHRSADMELLLAIARRGRDQKESSLYEYIRQMHQR 824 Query: 695 ------RHLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + L+Y R R + ++ ++ Q Sbjct: 825 CMENEQKRLLYVACTRARKGLHLFARLRPDRSGEDWASPRSGSLLRHIWEQLQPLAPPLP 884 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 +Q + P P + + + + + L P A+ Sbjct: 885 DAPEAEEQQQAQPPVPLKRVHSDWQIPRVAPRILPNLAITP----AQHDEGEPQPEFQWA 940 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G LFH + L +K ++ +++ + + +P + Sbjct: 941 GEMARLVGVLFHQWVRRLGEKNERESLSGDMEELRKNLRWSTYQLGVPHELRASVVERTI 1000 Query: 862 KISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 + + SS + P + G + DR+ + G I DY Sbjct: 1001 TALGNMGVDQRGRWILSSSHQDSRWEYPLTGT-DQRGHIVNIIIDRMFIDDQGTRWIIDY 1059 Query: 919 KTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 KTG + Q+ PQL ++ + V Y Sbjct: 1060 KTGQHEGGGLEHFLREEQQRYAPQLERYGFLA-----GKLGPQPVRLGLY 1104 >gi|154485116|ref|ZP_02027564.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC 27560] gi|149734069|gb|EDM50188.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC 27560] Length = 1144 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 106/873 (12%), Positives = 246/873 (28%), Gaps = 111/873 (12%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHAL-KNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + A+ + I+ + + L+ + + ++I S + E + E Sbjct: 114 SMPGFAEKMKTIVSEFKQYGITDDVLNNMKAECDSKPLLRHKLNDVEIISDAFNEYIKEK 173 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ + + I G TG P +++ + H G + L Sbjct: 174 VITT--EDVLTIFCKYISSSDFIKNTYFYIDGFTGFTPIQYQVLELLIKHCAGVKIAITL 231 Query: 263 DCHIPTAIWNTITEKSTNITSSN-TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 ++ N ++ + I+ S + L +++ +I++++ +G Sbjct: 232 PEDEFQSLRNAYSKGNNAISKYELFNLSKDTLWKLKDIINRNNIEQQETVIVGEGQAPYR 291 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 R ++ N ++ + + N REEA +A + Sbjct: 292 IRDNKELTFL---------EKNLFRNNSSKYRENCKALEVHSMSNPREEAAYVAGRISEL 342 Query: 382 LDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + A+IT D + R ++ E ++ I I +++ + + + + Sbjct: 343 IVDKGYRYNDIAVITGDMDGYYRYIEEEFSKNNIPAFIDHKHNIASNPFVDGIKAAIEIV 402 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 K + + L++ A + +E L+ + + + Sbjct: 403 EKDFSYETVFHLIRLGFLPID------REAVDIMENYVLQSGRRGFKSYGRLWEKAYKGM 456 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 T + V + +L E + L L + I D Sbjct: 457 TAEELDMVNQAREKLVEIIRPLREELKKKKATVREYTKAVYQFVQANNMQRQIDD----- 511 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + ++ +E+ T+ +L +I+E E+ I+ + Sbjct: 512 ---YRIEFQNQGEISRAKEYEQVYVTIITLLDRIVELMGDEVLTIKEYKQILQAGFESVK 568 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLI-LGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 V T+ + +RL + +I G+N+G+ PK ++ + L Sbjct: 569 VGIIPPGLDTVMVGDIERTRLKDTKRIIFFMGVNDGIIPKAGQAGGIITDTDREFLEKNN 628 Query: 674 ---LKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFF 728 TA + + T + T S ++ T ++ L+ + Sbjct: 629 YILAPTATDNVFKQKFYLYTIFAKPTEKMCITFSKSGSDGATRRKSYIISTLMNLFENLK 688 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQP------------------------------------ 752 + + L+ Sbjct: 689 IIDEDESEITLNQVTTRSKALDYLSQNIYEYSKEGDSGIFKELMATVMKNKEYSKVINLM 748 Query: 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 L + +++ Y+ + LKL F+ Sbjct: 749 FDGAFYSAKNPILDENVARQLYGNKENIGITRLERFAACAYSQFLNNGLKLGERKKFE-- 806 Query: 803 PDRTDRGTLFHNIITELIKK-------RINKNTPEINHLMKQIIDSHFEKENLPP----H 851 D G L+H+ I E + + + +++ I+ E+ Sbjct: 807 LAAFDIGNLYHSAIKEFFDTINTNNIKWADLDDKKSENIINDSIEKVMEQYENDALNDIA 866 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 + S + K S + ++A G DR+D + G Sbjct: 867 RSAFIKKQVKDTSTETVNALVKHIRSGNFLPREYELRIA--------HGRVDRVDTFEDG 918 Query: 912 ---FVDITDYKTG-DNPKKETAQKLIDPQLSLE 940 +V + DYK+G + QL + Sbjct: 919 NNIYVKVIDYKSGNKVFNVTETFLGLQMQLMVY 951 >gi|325142857|gb|EGC65224.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis 961-5945] Length = 1069 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 109/875 (12%), Positives = 217/875 (24%), Gaps = 80/875 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIIVQSQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + Sbjct: 146 RPQWIDAWQQGRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLE 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 SLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N D+ K NI + ++ A + E + L L E+ A++T + Sbjct: 311 QNLDMPSEKAGNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T +I +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + E ++ E +++ + + I I R +D E+ Sbjct: 551 LFQAEADDQKSVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ N ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832 E + +P V+ ++ L + I I+ R + + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAKTYIEARREGR--DFS 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|291556730|emb|CBL33847.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum V10Sc8a] Length = 1175 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 91/864 (10%), Positives = 222/864 (25%), Gaps = 141/864 (16%) Query: 157 DIIETEEKKWEDLHALK-------NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + ++ ++L E+ + + + ++L E A Sbjct: 162 NELKAAGISADELTKTLYSPEKNTAERLPVHLAEKMGDIAAVYSVYDKKLTEKYA-DRQD 220 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + I I G A + +A+ +V D + Sbjct: 221 NLTLAAQVIRNGDSFDENTTIYIDGFDSFSGAQQNFLRALADKGVNFVVALCTDENKAE- 279 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + E + + K Sbjct: 280 --------------------------------VFATCDRTERLFERGNREDIKYTRLCGK 307 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD---ENK 386 + + + D L+ + + + + + + + EA + +R + Sbjct: 308 APRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSGEADFVCANIRKLVRCEGYRY 367 Query: 387 KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 A+I A V R+ + + +P+S +LL A Sbjct: 368 SDIAVICASPAKYKDAVNSAAARYDVPVFADLPVPISEKPMLRFFEALLKAADNP-TGTN 426 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 I ++ + + + + + +M+ + D + + Sbjct: 427 ILRYIRSGFVRLPSEKN----NGKTVPMTLKERHLVEQHLMEEYAECWDLKRKKWDKPMP 482 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQN 563 + ++ + + + + D + Q+ Sbjct: 483 HITNASEQRVEEIRIATVTPLVEFAKSVCGIGGRELVKKFTSFLFDKVDISAAIQGKCQD 542 Query: 564 VCLDEHRKLPNL--WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + R + L + + +T+S + + + ET E+ +I ++ Sbjct: 543 NSTRQLRYVKELTEEYNQLWRTVSEMLTSLYETLDDTPLTLAEFSALIHSCASRISISRT 602 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP--FLSRVMQS----DLNLK 675 ++ +R + + G +G +P + F S +Q D+ L+ Sbjct: 603 PNVLDSVLFGDPARTRSREVKAVFVMGAADGAFPDIYPEGNSVFTSDDVQRLAENDIELE 662 Query: 676 ----------------------------------TAEKYIGQAAHDFEMANGTRHL---I 698 +E A H +L Sbjct: 663 NDEARYSSAVLDAYKAMTLAGEKLFITFTGEKENASEYIADIAKHFGAELINADNLDALY 722 Query: 699 YTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 T S++ + S L +K + + R Sbjct: 723 MTESVKSAEKQYVINSAQLTDGQKKAVEAVLSENEKEPSSIDRIKAVMSNNSGNSDIHRI 782 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P+ S + I++L +A + R + L + ++ G + H I+ Sbjct: 783 SDIAPIVFPQTALSPTAIEKLNGCKFAYFLRYGMNLSSSAGI--AMNASNYGNIMHYIMK 840 Query: 818 ELIK-----KRINKNTPEINHLMKQIIDSHFEK---------ENLPPHIDIIW--RHLFH 861 + R N N + +K +I+ + EN+ + ++ + Sbjct: 841 YCFEKLYDGARENGNPHVSDGRIKDLIEQALAEYREKYLLTEENMSARFNTLYNALSVTA 900 Query: 862 KISHSFLEHEEKIQSSIEKIFVNI----------------PAKMAIES---IGIHLTGFA 902 ++ E + +S + + + + I + G Sbjct: 901 FYLIKYMAQELE-KSRFVPSYFELKLESGKSENGFDISPYSFDIELADKSRQTITVGGTV 959 Query: 903 DRIDLL-----KSGFVDITDYKTG 921 DR+D+ G + + DYKTG Sbjct: 960 DRVDIAYNDDKSGGQIRVIDYKTG 983 >gi|316985731|gb|EFV64676.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis H44/76] gi|325140819|gb|EGC63329.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis CU385] gi|325199688|gb|ADY95143.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis H44/76] Length = 1069 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 106/900 (11%), Positives = 216/900 (24%), Gaps = 86/900 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMAGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E ++ E +++ + + Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748 L L+ ++ Q D+ L T Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + P +P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818 Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 819 EPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|293400339|ref|ZP_06644485.1| hypothetical protein HMPREF0863_00623 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306739|gb|EFE47982.1| hypothetical protein HMPREF0863_00623 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 882 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 86/655 (13%), Positives = 190/655 (29%), Gaps = 79/655 (12%) Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A N+R+E A + + + A+ AD + +K R+ I Sbjct: 178 KFYHAVNKRQEIEGCAQYILR-HEMKAEDVAITLADTSYIPILKQIFNRYHIPY-----T 231 Query: 420 PLSTTLHSSILTSLLNAIFKLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 L + SSI+ + + + + + E+ LS L++ Sbjct: 232 NLVASAASSIIVKRAHMLLNYYLQPTQEHLLACLDCGIFH----EETLSSLLQYLQIYQK 287 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + + L + T +E +E A + HI + + PL+ Sbjct: 288 DFFQPFDHLQTLSTTSHILNETDVA----------KLKEIEERAEIARQHIAEQLRPLMH 337 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + + + ++ D + + + + Sbjct: 338 PASYEEM---------LLTVLKLLKNSLGNDMQQSAVLQDVMNVINEVYPYIKEKDD--- 385 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 I + +L+ TV I + + + + L G + +P Sbjct: 386 ---------ITFLLQLLADITVHSTIHQLQGVSVTSLKQGSCTRKHH-FLLGATQNQYPA 435 Query: 657 NTAKNPFLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 AK L + E +Y ++ N ++HL + L ++ Sbjct: 436 FMAKRGIFDEHYYETLPYPSMEHRYQLHLKQLRKLLNRSQHLYISYPLGTYEGKSL---- 491 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 + +R + Y + + Q S S I Sbjct: 492 ------EAALEIEQMFDERAKPYPLQEMYEKADIALTITSQTAHALFVRNQQIKGSISSI 545 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ + P++ + R L + + GTL H ++ L K++ T + Sbjct: 546 ERYVKCPFSYFLRYGLGIREPMKL--GFADSYMGTLSHYLLETLTKQQGKAYTSVCETTL 603 Query: 836 KQIIDSHFEKE-NLPPHID---IIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPA 887 +ID + + + I R + EE S + Sbjct: 604 TALIDKEIDALQEVFSDMRTRLQILRIRIESSMMQTLRRLASFEE--HSHFQPWQQEREF 661 Query: 888 KMAIE---SIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAA 943 + I + + L GF DR+D+ + I DYK+ + + QL + Sbjct: 662 QYEIPVTSDVTLALHGFIDRLDVYDD-ILCILDYKSSAKTLSETKVFAAMQLQLLTYSIV 720 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 + ++ +++ +Y+ LK + ++ + +L + + Sbjct: 721 MAK-----LEQKEIMGAYYLSLKNENIPHPAGKLSRRKPV-TYTPIEKADLQDAI 769 >gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] Length = 1090 Score = 126 bits (317), Expect = 2e-26, Method: Composition-based stats. Identities = 118/1057 (11%), Positives = 248/1057 (23%), Gaps = 163/1057 (15%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRS 62 ++ V P A T+ + N L+ V T++A ++L Sbjct: 29 EQAAVVAAPPEPALVVAGAGAGKTETMAARVVWLVANGLVTPDRVLGLTFTRKAARQLAD 88 Query: 63 EFI-------------------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 ++ P + + + LL Y L PV Sbjct: 89 RVRARLRRLAGSGLLDDVDPSGRRRLAVASGEPTVLT-----YHAYAGRLLAEYGLRLPV 143 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIE 160 R+L + + DL + + + LA L + + + + Sbjct: 144 QPGARILSETASWQLAYRVVSSWDADLDTDKAPMTVTE--HLLALAGELGEHLVSPERLR 201 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIAS------------KYWTERLVELNASSPV 208 + DL G + L I + + + R A Sbjct: 202 EYTTWFCDLVENAPRAKGQRAKPKKELLDIVAAQRLRLQLLPLVEAYEHRKRAEGALDFA 261 Query: 209 GYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 R + G +++ + A L+ ++ P V D Sbjct: 262 DQMSLAARLAETQPDVVASERERYGAVLLDEYQDTGHAQRVLLRSLFGGPAPMPVTAVGD 321 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 W + + +++ +L + + S Sbjct: 322 PAQAIYGWRGASAANLPRFTTD----------FPRLDERTGQPVPAREYGMLTSFRNPPE 371 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---- 379 + ++ S P + L + +D+ + + E +A + Sbjct: 372 VLTLANSIAEPLRAKGLGVQELRARA---DAGPADIRVALLPDVVSEREWVADQIATRWF 428 Query: 380 --MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 +A++ R + L G+ +++ L + L + L + Sbjct: 429 AERDATGTAPTAAVLVRRRVDMAPMAAALRARGLPVEVVGLGGLLDEPEVADLVATLRVL 488 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + A L+ + G + R D A Sbjct: 489 AEPLSGTAAVRLLTGARWRLGAADLGAL----------WRRAGELSAADDTVVAERAEQA 538 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + P SR SEE L + + + + D L Sbjct: 539 GLVDAIDDPGEPSRYSEEGYARIRRLSRELEALRRRMDQPLPELVADVERTMLLDVEALA 598 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + + + + ++++ TR DG Sbjct: 599 R-------------PGAVGRAHLDAFADVVNDYAENSPTATLLSFVDYLAAATRAEDGLE 645 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGL------NEGVWPKNTAKNPFLSRVMQSD 671 + +L ++ L + + + L NE L ++ D Sbjct: 646 PGEVEVVPDRVQVLTAHSAKGLEWRIVAVPHLVDRTFPNERKTSSWLKTVTELPAALRGD 705 Query: 672 L---------NLKTAEKYIGQAAHD----------------FEMANGTRHLIYT----RS 702 + ++ A + + H + Sbjct: 706 AQDLPQLALRGGEDRKQVEEALAEHEEGFRRRHAEEERRLCYVALTRSEHCLVVSGYRWG 765 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG------QCYLDWTRKLDYTTKQPHYKR 756 P S +L + D + + +R+ ++ +R Sbjct: 766 DANATEPKAPSPFLTEVAERVREDPTVGVVEHWCSEPGENPLAGVSRETEWPVDPLGARR 825 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVY---------------ARRILKLDFIPHFKK 801 P E + + + Sbjct: 826 PAVDEGARLVLEALEELESGADAETDEEITEEDDPDNWVSDTDVLLAERARAREPQVEIE 885 Query: 802 DPDRTDRGTLFHNIIT--ELIKKRINKNTPEINHLMKQ------------IIDSHFEKEN 847 P + L +L ++ N ++ D F+ + Sbjct: 886 LPGKLSVSQLVDLAGEPEDLARRLRRPLPFPPNAYARRGTEFHGWLERRFASDKLFDLDE 945 Query: 848 LPPHIDIIWRHLFHKISHSF-LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906 LP D + E + V +P AI+ GI + G D + Sbjct: 946 LPGAADADVGDADPADLEALKEAFERSPWAQRVPHDVEVPFSTAID--GITVRGRIDAVF 1003 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 G + D+KTG P E + QL+ A Sbjct: 1004 ADPDGGWTVVDWKTGALPDAERMPA-LAVQLAAYRLA 1039 >gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] Length = 1174 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 85/828 (10%), Positives = 191/828 (23%), Gaps = 106/828 (12%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIA 233 + + + + + R A I++ Sbjct: 347 RALLELAHAVIERYENAKMAKGYLDFEDLVVKTARLLARSDAALWVQYKLDQGLDHILVD 406 Query: 234 GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEK----STNI 281 + + P +++S++A + D + Sbjct: 407 EAQDTSPRQWQVVSSLAAEFFSGESASDRVRTLFAVGDEKQSIYSFQGAVPAYFDAMRRQ 466 Query: 282 TSSNTTYSTH------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 S + + H Q S D L + K + ++ Sbjct: 467 FSKHAEAAQHTFHSVDLQLSFRSTPDVLGAVDKVFKESDAYQGLSQELKAPVHEAIRRDP 526 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLDE----NKKKSA 390 E + + + + + A I+ A+R +++ Sbjct: 527 GLVEIWPLEQEADVVEPEDWREPIDHVGISSPPARVAQRISTAIRDWMEKGEVAPGDIMV 586 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 L+ + EL + GI + S + L+ + L +L + D +++A ++ Sbjct: 587 LVRKRGAFVEILNRELKQRGIPVAGSDRLVLTDHIAVQDLAALGRFLLLSEDDLSLAAVL 646 Query: 451 KHPLAKFGFPEK-------YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 K PL + + R L + + ++S + + + Sbjct: 647 KSPLFQLTDEDLLEIARDPDGRRRAGTLWQGLVSRGMDMPKWEKVRSRLDIW--RARADF 704 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + + + ++ LT+ Q Sbjct: 705 MPPFEFYSRLLSADGGRRQFRKRLGVEVDDV---------------LDEFLNLTLAYEQT 749 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L W + + + + + ++ ++ KP Sbjct: 750 GTPGLEGFLA--WMAAAPTEIKRELTSTKGLVRVMTVHGSKGLEAKVVILVDPGSKPVNA 807 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 F+ + L + + + +++ + E Sbjct: 808 THDPAFLPRESGVAGAPPALVWLP--------TKADRTQWHNSAIEARHETQAEE----Y 855 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + + + L W R Sbjct: 856 RRLLYVALTRAEDRLVVCGWEPKSGAPENGWYNLVSRALTADAREIKNTVGETTAWQWQR 915 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL------------ 791 + + E P Q + P R+ Sbjct: 916 AANDPEVMDLQETHHSDAQTETAPMLDLPPPPPQWLAKPVKPLPRKRRLQPSKVFEVMEE 975 Query: 792 --KLDFIPH-------FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 ++D +P +RG + H ++ L + I+ + + Sbjct: 976 KERIDPVPTSARLKSRLADPSWPLERGRIVHRLLEVLPEMPAEDRDGAIDRFLDASLPDA 1035 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLT 899 F+ + L EE E +P I I ++ Sbjct: 1036 FKAR----------KSELSDEIQKILLSEEFASLFAETARAEVPVAGTILTTGGAEIAVS 1085 Query: 900 GFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQLSLEAAALK 945 G DR+ V I DYKT E QLS+ LK Sbjct: 1086 GQIDRLVECPD-HVLIVDYKTNVSVPRHPEEVSAEYRAQLSVYRELLK 1132 >gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] Length = 1155 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 104/863 (12%), Positives = 225/863 (26%), Gaps = 118/863 (13%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIP 240 + K + + + ++ + I++ + + P Sbjct: 346 SLYLKIYADLKKANGLLDFDDLIERTLHLLQRRGASQWVQYKLDHGIDHILLDEAQDTNP 405 Query: 241 ATARLMSTVA--------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 A +++ +A N + D + ++ Sbjct: 406 AQWQIIQLLAKEFFTGDSQRTNTRTIFAVGDEKQSIYSFQGAEPENFAKNGRMIQKQIQH 465 Query: 293 ----------QYSLAKLLDFLDIKREDVKRLG---NVSNEMYGRSMVISKSFLPPDTSDM 339 YS D L + +S + + P D Sbjct: 466 VNEKFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSADNAKTVHEPIRVNSPGDVIVW 525 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREE---AISIAIALRM--------SLDENKKK 388 + +P+ S V ++ R A +IA L+ L Sbjct: 526 DVISKQTSTLPD--DWHSTVDHLDTPEVRLADKIATTIADWLQKGEMLPAKGRLLRASDI 583 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 L+ + L I + + + L++ + L +L + D +++A Sbjct: 584 MILVRKRDQFVPALSRALKLRNIPVAGADRLQLTSHISVQDLMALARFVLHPKDDLSLAC 643 Query: 449 LVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++K PL Y A+ +L + ++ + + V Sbjct: 644 VLKSPLFALSEEALYQLAAQRTGSLWQSLNAHASSHDYFKEIFENLSKY-RALVDQIPVF 702 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + S + DK +L + L + + L+ + Sbjct: 703 EFYSHILNNDKGRQKILARLGPESNEVLDAFMDYTLTIQKTG-----LPGLQAFLETLSK 757 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 +E L + + + ++A+ + +D Sbjct: 758 NEPEIKRELD-----QNHEEVRIMTVHAAKGLEASVVFLVD------------------- 793 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 G+ LN F ++ + L+ Sbjct: 794 ----SGSAIWNSHYAPHFFKLPLNGKQAFIWRPNAEFKTKPFEKALSHLKESAEEEYRRL 849 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + + + + + WL + K W + Sbjct: 850 LYVGMTRAEDRLIICGYSQKRE--VPNTWLHLVKNALKPYAVP-TKGPADDIAAWRYSIT 906 Query: 747 YTTKQP-------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA------------VYA 787 +T P + P P + + S + +++ A Sbjct: 907 PSTSFPIDQKILGEASQEFPPLPAFFHHKIPAESALPKILKPSVTNFATDTDSEIELFSA 966 Query: 788 RRILKLDFIPHFKKDPDR--TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 ++IL + I K + G L H ++ L K + I SH++ Sbjct: 967 QKILNVSPILEAKNTNKAFSIEYGNLIHKLLQYLPDCPPEKRQDYAQQYL-NIKASHWDD 1025 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + IW I + H + + S + V++ + I ++G DR+ Sbjct: 1026 TKKNNALHDIW-----AILDN--PHLKLLFSDSSRAEVSLMGIVKIRGKEQMISGRIDRL 1078 Query: 906 DLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 + + + D+KTG P+ E + Q++L L+ I K F I Sbjct: 1079 CITQD-CILFADFKTGTPPEDETAITQNYWSQMALYRKMLQ-----TIYPEKTIQAFLIY 1132 Query: 965 LKQKFKIDCITNDKKKYSADELS 987 Q KI + K DE++ Sbjct: 1133 -SQGAKIFTLLPKKLDTLLDEIA 1154 >gi|150398844|ref|YP_001322611.1| UvrD/REP helicase [Methanococcus vannielii SB] gi|150011547|gb|ABR53999.1| UvrD/REP helicase [Methanococcus vannielii SB] Length = 1016 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 93/274 (33%), Gaps = 26/274 (9%) Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 PPL + +S S+IKQ I P +L + GT H I +L Sbjct: 767 PPLVDKSMKFSASKIKQYIGCPLNFKYNYVLNIPTPKKAH-----LTVGTDVHKIFEDL- 820 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 NK L K ++ + ++ + K+ + + E K ++ + Sbjct: 821 GILKNKGEAIDLELAKSMLSENLKEFSFNSKTEFEEEYSKSLKMIEYWFDFESKNKN--K 878 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK-ETAQKLIDPQLS 938 + + + G TG DRID+ G I DYKTG + D Q++ Sbjct: 879 ILATEEKFNLDL--GGFTFTGIIDRIDVTPDGEYIILDYKTGKKSSVLTKPKMAEDVQMA 936 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 L A A+ F + V ++ Q + ++ D E +N+I V Sbjct: 937 LYAMAV----FEKYGKYPV------KMGQLYVNPDVSKDVIIDVNPANIENIKENVISNV 986 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + + + F K +Y + E Sbjct: 987 NKIMDED--FTVINTP--KMCYFCDYKDICEYLE 1016 >gi|319410967|emb|CBY91363.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis WUE 2594] Length = 1069 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 106/900 (11%), Positives = 215/900 (23%), Gaps = 86/900 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ + + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEYCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E + E +++ + + Sbjct: 526 DIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRL----------------LVLGGTDFFDNLKKR-----------GQCYLDWTRKLDYT 748 L L L +R D+ L T Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + P +P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818 Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 819 EPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] Length = 1140 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 110/1002 (10%), Positives = 253/1002 (25%), Gaps = 144/1002 (14%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + L Q L E A L+ + +L + + A Sbjct: 217 FAAVREVIEAREALGAKTKGRQTLTEAAGLLDEMQKQLLAPEPECSLLDASGVVKVSGKA 276 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 LA L ++ ++ + L K W L+ + R E N Sbjct: 277 --LAAELTNLKNLRQELN---HVLLNAKGCDLVQDW---LAVLQEFYACLSARKQENNIL 328 Query: 206 SPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--NHPNGAIV 258 + + + I++ + +L+ + + Sbjct: 329 FNDDLDLLAIEHLQKNEALRQKYQERYKYIMVDEFQDTNERQRQLIYLLCGNKLDGKNNL 388 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + N + + + E Sbjct: 389 FIVGDVKQSIYRFRHADVSVFNKVKEDIAQNAGQNLGMKTNFRSTQSIVESCNTAFCQLM 448 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 ++ + + + K + + D ++EA +IA L Sbjct: 449 DLPKEEICLEHHEGANTGGAKVCLLQVPYKSKDDDLGAKE------DKWQKEAEAIAAYL 502 Query: 379 RMSL------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 + L A++ ++ L +GIN + G + + Sbjct: 503 QQELPKVEPQLRPGASKAILLRAMTHCEILRQTLQGYGINCVVVKGKGFYEQQEVLDILN 562 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL + + +A ++ + L++ E + L Sbjct: 563 LLAVLHNRYTSLELAGALRSNYFG--LDDATLTQLFWQTENDKPLWDVLQAVGSGELQLN 620 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 L +S L + + P +N ++ Sbjct: 621 LQPEQQALAMQAAERLRSLRQAAALMALPELFAQLWDELKPEFVLSQQENGPSKLANVKK 680 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 +L ++ +T + ++ ++ ++A+ Sbjct: 681 LRRLA--------------------QQYCQTKQASLAEWLQNVKDLRAS----------- 709 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + ++ L I+ S+ L FD +IL L++ V + F + + L Sbjct: 710 -SSKEPAATVQADDALQIMTIHNSKGLEFDLVILPQLDKSVKGDTASIKYFSGKEGEQGL 768 Query: 673 -NLKTAEKYIGQAAHDFEMANGTRH-------------LIYTRSLREN------NIPTIA 712 +K +K + R + TR+ ++ + Sbjct: 769 LGIKVPDKEMQLQNSGVYELAKARDSELEEEESRRLLYVAMTRAKKQLLMVGTVAEEKLP 828 Query: 713 SR---------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 W Q+L + D+ L L Q ++ PL Sbjct: 829 EAVIALPAAKGWWQQLQAVYEVDWDKQESSCPWVRLLCADALSPAVVQQGVQQQLALEPL 888 Query: 764 EAQPRT---------YSFSEIKQLINDPYAVYARRILKLDFIP-----HFKKDPDRTDRG 809 P ++ S ++ ++ Y +++L + + + + G Sbjct: 889 ALAPLPAYAACGRTCFTASALQTYLHCQRQYYYQQVLAVPELEQTVAGEQAHELPASVTG 948 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 ++ H + + + ++ + +++ Sbjct: 949 SIVHKALELYNGYNA-----------EAVFAIALDEFAPGAAATQ-----AKSMFDAYIS 992 Query: 870 HEE-KIQSSIEKIFVN--IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 + K +K + P + + + G+ D + + + I DYKTG P+ Sbjct: 993 SDLYKSLPKKQKRELEFVQPLQQELAAEGV-----IDLLAFDEDDNMIIVDYKTGTPPEP 1047 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + + QL+L K + ++V L+ + A EL Sbjct: 1048 DEVKLGYAYQLALY----KDAAEKLYPGKRVVCAELHFLQNMSVWQLPLDKSYLQEAIEL 1103 Query: 987 SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E+ E F +S Y +L Sbjct: 1104 CEEISGK---------GEEDDFACSCN---ESCAYCHYAYLC 1133 >gi|15677567|ref|NP_274723.1| exodeoxyribonuclease V 125 kD polypeptide [Neisseria meningitidis MC58] gi|7226975|gb|AAF42066.1| exodeoxyribonuclease V 125 kD polypeptide [Neisseria meningitidis MC58] Length = 1069 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 106/900 (11%), Positives = 216/900 (24%), Gaps = 86/900 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSEMAGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPKGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E ++ E +++ + + Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748 L L+ ++ Q D+ L T Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + P +P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818 Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 819 EPQHADQIAEIYIEARCEGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|9857300|dbj|BAB11938.1| orf3 [Streptomyces griseus] Length = 551 Score = 126 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 62/505 (12%), Positives = 127/505 (25%), Gaps = 66/505 (13%) Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 P A L + + L T + + + + W Sbjct: 9 ELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALWNGTPWPGR 68 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 +L ++ E + + ++ + I + Sbjct: 69 LERAALRGGAGGRNADRDLDAVCALFETAA----RAEERTGGRGALNFLEEVDAQDIAAD 124 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 T+ + + + ++ S+ L + +++ G+ EG+WP + L L Sbjct: 125 TLSRRTARPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAE 184 Query: 677 AEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 A L+ T + SR+L L V Sbjct: 185 PLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGV--EPRDVTGR 242 Query: 732 KKRGQCYLDWTRKLDYTTKQPHY------------------------------------- 754 +R +L TT P Sbjct: 243 PRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPAAHPYRWWG 302 Query: 755 ----KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRG 809 R QP T S S + QL N + R + G Sbjct: 303 LEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGR-----EVKADAPATAAQGFG 357 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 + H ++ + + ++ + + + + FL Sbjct: 358 NVVH-VLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLH 414 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKK 926 + + +E+ + + G DR++ G + D+KTG P K Sbjct: 415 WHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTK 474 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQ 951 + PQL++ A++ G+ + Sbjct: 475 DEVATH--PQLAVYQLAVREGAVDE 497 >gi|296314385|ref|ZP_06864326.1| exodeoxyribonuclease V, gamma subunit [Neisseria polysaccharea ATCC 43768] gi|296838944|gb|EFH22882.1| exodeoxyribonuclease V, gamma subunit [Neisseria polysaccharea ATCC 43768] Length = 1069 Score = 126 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 104/899 (11%), Positives = 216/899 (24%), Gaps = 84/899 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFAHIQKFKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLA-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRRVLQNY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + A + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMHWGNVIEAAQILKGGGDPDLTQTGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + ++ + ++ A + E + Sbjct: 286 EIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETAGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDENKKK----SALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHYIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYK 538 D + +P + + ++ + ++ + + Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTVMFGRFAAFIESLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + + E + G Sbjct: 526 DIVRIWRQPATVGEWVARCRDLLEILFQTGADDQKAVQNLE--NEWVKWQEESTLAGFIG 583 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 584 QLPQQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756 L L+ N ++ Q +++ + Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808 P+P P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I+ + +W+ F + Sbjct: 820 PQHADQIAETYIEARREGR--DFAQTAARIVAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] Length = 1157 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 102/861 (11%), Positives = 223/861 (25%), Gaps = 118/861 (13%) Query: 191 ASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARL 245 + L+ + + L++ + + I++ + + P ++ Sbjct: 351 IYANLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDSGLDHILLDEAQDTNPEQWKI 410 Query: 246 MSTVANH--------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH------ 291 + +A N + D + ++ Sbjct: 411 IQLLAQEFFTGHSQCTNIRTLFAVGDEKQSIYSFQGAAPENFAANGRIIQKKVQQVNQKF 470 Query: 292 ----PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 YS D L + N + + ++ D+ D + Sbjct: 471 EKIQLNYSFRSTADVLKSVDLVFETPENYKGLSAENTKTVHEAIRVHSPGDVILWDAISK 530 Query: 348 KIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDENK------------KKSALITA 394 + + V + D A IA + L + L+ Sbjct: 531 ETNEFPDDW-HVTVDHLDTPEVRLAEKIAETVANWLHNEEMLPAKGRLMRASDIMILVRK 589 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L I + + + L+ + L +L + + D +++A ++K PL Sbjct: 590 RDQFVLALSRALKLHNIPVAGADRLQLTNHISVRDLMALARFVLQPQDDLSLACVLKSPL 649 Query: 455 AKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 E Y A +L + D + T + V + S + Sbjct: 650 FALTEDELYQLAAHRTGSLWQSLCMHALSHASFKDAFENLNHY-RTLVDKIPVFEFYSYI 708 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 DK +L + L + + + T ++ + Sbjct: 709 LNIDKGRQKILARLGSEANDVLDAFMDYTLTIQKT-GLPGLQAFLETLSESEPEIKREFH 767 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 N + ++A + +D I Sbjct: 768 QNHEEVRI---------MTVHAAKGLEAAVVFLVD------------------PGTPIWH 800 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 + L L+E F +++ + L+ + Sbjct: 801 PQHASHLLKVPFFNTQLSEQQNFIWHPNAQFNTKLSEKALSRLKERAEEEYKRLLYVGMT 860 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 ++ + R +L+ T +K + W + ++ P Sbjct: 861 RAEDRLFIC---GYSGKRTFPRTWLQLVKKALTPHAIPIKGPAEDIAAWRYCITPSSSIP 917 Query: 753 -----------------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 P PL + S + + Sbjct: 918 INQEVSCAESQTFPPLPDFFFHKVPAEPALPKPLRPSVASLSIEADTEFAPNLKQFSISP 977 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 +L + G L H ++ L K H + SH+ + Sbjct: 978 VLG----KTKTNRAFSIEYGNLIHLLLQYLPDCIPQKRRDYAQHYLNTKA-SHWNESQKK 1032 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + IW+ I + + + S + V++ + I ++G DR+ + + Sbjct: 1033 DALRHIWQ-----ILDH--SYLKPLFSEGARAEVSLMGIIKIRGKEQAISGQVDRLYITQ 1085 Query: 910 SGFVDIT--DYKTGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 + I D+KTG P+ E A D Q++L L+A I K I Sbjct: 1086 NK---IIFADFKTGIPPENEAAIAPRDLLQMALYRKLLQA-----IHPTKNVQALLIY-T 1136 Query: 967 QKFKIDCITNDKKKYSADELS 987 ++ KI + ++K DE++ Sbjct: 1137 KEAKIFKLPSEKLDALLDEIA 1157 >gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] Length = 1147 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 105/841 (12%), Positives = 218/841 (25%), Gaps = 92/841 (10%) Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLV----ELNASSPVGYQIALMRAEAE------- 220 L + + D L +L + +A + A Sbjct: 336 LPDAEIDQSQQKMLDALGFLLPLLAAQLDVIFQQQGQCDYPAITLAALNALEPEAGDGVV 395 Query: 221 ----HLMKGTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNT 273 + I++ + A +L+ + +G + D + Sbjct: 396 SDITLRLDYQLRHILVDEFQDTSAAQIKLLEQLIGGWQPDDGRTLFLVGDAMQSLYGFRN 455 Query: 274 ITEKSTNITSSNTTYSTH--PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 + P + L I + S Sbjct: 456 ANVGLFLNAQRHPVGPVQCRPLTLSSNFRSQLGIIEWVNSAFTDAFPAHADISRGAIPYS 515 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-SA 390 N + + + ++ +EA IA D + A Sbjct: 516 PSVAVKAADNAQSVSFQGFSGDN-----------HKLDEAAYIAKLCSDLRDHKPDESIA 564 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 ++ R R + L + PL++ + L SL A+ D +A ++ Sbjct: 565 ILVRGRGHLRSIIPALREAKLFWQAIDITPLASRMPVIDLLSLTRALLSPADKIAWLAVL 624 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + P + L N+L +K + ++ +L A+Q + +H+ Sbjct: 625 RAPFCGLSLGD--LLAVANSLGDNKENPHKPNNAVLAQLIELLGVSASQLHLSHLSQDGQ 682 Query: 511 RLSEEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + + L + + + + G ++ D L D Sbjct: 683 QCLQRIVPLLESAWANRGRTNLR--ASVEQLWIDLGGPATLKDSADL---------SDAR 731 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 L L + G T+S S + A + + DG + + S + Sbjct: 732 SYLDLLENWQTGATVSDWNSFKLAVDKLYAAPSPD---------DGGSDNTDGSQKSVIQ 782 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--------SRVMQSDLNLKTAEKYI 681 I+ +++ L FD +IL GL+ G + S ++ + L E Sbjct: 783 IMTIHKAKGLEFDHVILPGLSRGSGSDKKQLMRWQQHIDEHSDSSLIMAPLGAHDEEDDS 842 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG------ 735 + + TR + A+R ++RL + G N + + Sbjct: 843 VYSY------LKREDSLKTRLESTRVLYVAATRAVRRLYLCGAVKQLKNGQWQPTGKTTL 896 Query: 736 --QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILK 792 + LD + + + + P L Sbjct: 897 LTPIWKSIETGLDQGLYAVQQSATELADKDSKEVPSLRHIRRLDGQFQSPQRPDTSANLG 956 Query: 793 LDFIPHFKKDP-------DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 GT+ H + +L + + + + + ++ Sbjct: 957 TPETSAETGSDIDSSLSSRARSMGTVLHRTLKQLANEGVEQWPESRISQLPATWGAQLKE 1016 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + +S L + E+ G T D Sbjct: 1017 LGM--LARPDELKSLLDAVNSMLADQRGRWILQHHEQAQCEQALGYRYSDRGHVGTSVID 1074 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANLF 961 R + ++G I DYK + E+ + I Q S +A L + + + V Sbjct: 1075 RTFV-ENGTRWIIDYKLSQPAEGESETQFIVRQSSAYSAQLSHYAKLYRSMQANPVHCAL 1133 Query: 962 Y 962 Y Sbjct: 1134 Y 1134 >gi|304386797|ref|ZP_07369064.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis ATCC 13091] gi|304339147|gb|EFM05234.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis ATCC 13091] Length = 1069 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 103/882 (11%), Positives = 225/882 (25%), Gaps = 63/882 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 +I +W L+ + E ++ E +++ + + Sbjct: 526 DIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L L+ ++ Q +++ Y + RT + + Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYATAL 756 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 Q P + + + + + +D + + N + +++++ + P + Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + E + F + +I + Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850 >gi|261399984|ref|ZP_05986109.1| exodeoxyribonuclease V, gamma subunit [Neisseria lactamica ATCC 23970] gi|269210447|gb|EEZ76902.1| exodeoxyribonuclease V, gamma subunit [Neisseria lactamica ATCC 23970] Length = 1069 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 106/902 (11%), Positives = 219/902 (24%), Gaps = 90/902 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVIRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D L L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLIGLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + ++ + ++ A + E Sbjct: 283 NEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETAGSVNTGDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L + + + + L++ + L A V Sbjct: 403 RRQPFFYALECLFDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLV 535 + D + +P + + ++ + D + + Sbjct: 463 LDGEMRGGTDRLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + + E + G Sbjct: 523 TLSDIARIWRQPATVGEWVARCRDLLEILFQTGADDQKAVQNLE--NEWVKWQEESTLAG 580 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 581 FVGQLPPHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753 S L L+ ++ Q +++ Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756 Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + P+P P E + +P V+ ++ L + Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAE 816 Query: 807 DR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 I I+ R + + +I+ + +W+ F + Sbjct: 817 PFEPQHADQIAEAYIEARREG--QDFSQTAARIVAESL---LPSGELGRLWQQDFQTAAK 871 Query: 866 SF 867 Sbjct: 872 QI 873 >gi|227514156|ref|ZP_03944205.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum ATCC 14931] gi|227087527|gb|EEI22839.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum ATCC 14931] Length = 1248 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 121/1074 (11%), Positives = 274/1074 (25%), Gaps = 197/1074 (18%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + P +SN+ + +A++I + + PD+ L + Sbjct: 77 SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 127 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189 + A + + ++ + DL AL ++ G + F + Sbjct: 128 SERQGFATAVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFTDKMT 187 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248 + + + + + A++ E + + + G ++ Sbjct: 188 VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 246 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V LD + Y AK L Sbjct: 247 LIQRAADTTVSLILDRDY---------------RGRELPSQNNLYYRSAKQYQDLLNLAT 291 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + S + D + V A Sbjct: 292 QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 351 Query: 369 EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 E +A +R + + ++T + + + +R I + P++T+ Sbjct: 352 AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 411 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472 ++ +L + + L+K L + A E Sbjct: 412 PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 471 Query: 473 LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L+ K D + L K +W +++ A+ + Sbjct: 472 NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 531 Query: 529 QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576 + + W + Q + L Sbjct: 532 TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 591 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633 + NA + I + +++ E+ + + LFI+G Sbjct: 592 DQVAPTEQPGQLVAEFADLMNTGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 651 Query: 634 LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681 + + GLN+ + + + + + L++ + + + Sbjct: 652 TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 711 Query: 682 --------------------GQAAH--------------------------DFEMANGTR 695 G A H D Sbjct: 712 MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAP 771 Query: 696 HLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + R + R + T + L R D + Sbjct: 772 AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQ 831 Query: 753 HYKRPKP----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + T S S++++ +PY + R L L + D++ Sbjct: 832 PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 889 Query: 809 GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856 GTL H+ + ++ I++ ++ L+ ++ID FE+ N + + Sbjct: 890 GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 949 Query: 857 ------RHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------------MAIES 893 + ++ + + + Q+ + + V + + Sbjct: 950 SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1009 Query: 894 IG--------IHLTGFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941 G + L G DR+D LK G + DYK+ A Q+ Sbjct: 1010 TGAGLGEGAKVSLRGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1069 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 AL+ + ++ Y+RL + K+ +A+EL E + + Sbjct: 1070 NALQ----AANPGEQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1114 >gi|148244358|ref|YP_001219052.1| hypothetical protein COSY_0198 [Candidatus Vesicomyosocius okutanii HA] gi|146326185|dbj|BAF61328.1| hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 826 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 59/434 (13%), Positives = 138/434 (31%), Gaps = 45/434 (10%) Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + + + + IL E+ L FD + G+ F++ + + Sbjct: 422 LTTQIIFQAQASKTNIQILSVSEAHGLYFDEAWVLGMTNQFVSTQLNLPRFITYDISTKH 481 Query: 673 NLKTAEKYIGQ--AAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 ++ + + A + E N +I++ + + S ++ + Sbjct: 482 HIPHTDYKLIATDAKNTLESLNSIAGKVIFSYAATHLGSKQLPSPLVKFDTSINTNHIQK 541 Query: 730 NLKKRGQCYLD-WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + D T L+ T +K + + + Sbjct: 542 IFPIALESINDTKTTHLEKT------------------QVKSGVCILKDQMACAFKGFI- 582 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELI------KKRINKNTPEINHLMKQIIDSH 842 L + +R ++G + HN + + K+ + N E++ L+ I + Sbjct: 583 HRLNIPNFDAPHIGINRLEQGYIIHNTLQYIYQKITSKKQLLALNNKELDKLILNTIKAA 642 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + I + ++ HSF+ ++ + + I ++ + Sbjct: 643 L-RHYPSSSFKKIEKLRLSRLIHSFIAVDKLR-EDFYILKTEQSITINIANLEFKI--RL 698 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLID-PQLSLEAAA--LKAGSFSQIDCRKVAN 959 DR+D + +G I DYKT I PQL + A ++ +F ++ K+ Sbjct: 699 DRLDQMSNGDKIIFDYKTSSTSIYNWCDTAISKPQLPIYAITNNVQGAAFIELTSHKIN- 757 Query: 960 LFYIRLKQKFKIDCITNDKKKY--SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017 + L + + K S ++ + L QNG I+ + ++ Sbjct: 758 --FKGLSEDSDSLPKQSKYKGKCQSWNKQLKIWQNILNTASFDFQNG----IAAVLPNKN 811 Query: 1018 SNIQSEYDHLARVA 1031 + ++ RV Sbjct: 812 ACDYCKFYLFCRVK 825 >gi|325205568|gb|ADZ01021.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M04-240196] Length = 1069 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 107/899 (11%), Positives = 219/899 (24%), Gaps = 84/899 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + A + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFG---FPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ P+ + + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRHFGLTEDDLPLLHDMVADLNVRWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + + + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQGVSAWYADVNQTALFGRFAAFLETLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 +I +W L+ + E + E +++ + + Sbjct: 526 DIVRIWRQPATIGEWVARCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756 L L+ ++ Q +++ + Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808 P+P P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 820 PQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|289759336|ref|ZP_06518714.1| helicase [Mycobacterium tuberculosis T85] gi|289714900|gb|EFD78912.1| helicase [Mycobacterium tuberculosis T85] Length = 953 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 87/888 (9%), Positives = 194/888 (21%), Gaps = 108/888 (12%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIP 240 L ER+ + R A ++ +++ + Sbjct: 81 AELVPLLDALGERMHAGKVMDFAMQMASAARLAATSPQVGRDLRRRYRVVLLDEYQDTGH 140 Query: 241 ATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A ++S++ +G + D W + + +++ S + + Sbjct: 141 AQRVVLSSLFGGGVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPVLE 200 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LL + ++ +S E RS+ + P Sbjct: 201 LLTSWRNPPQALRVANGISAEARRRSVAVRALR------------------PRPDAPPGA 242 Query: 359 VALIEADNEREEAISIAIALR------MSLDENKKKSALITADRNLARRVKLELTRFGIN 412 V + + E IA LR + +A++ A + L GI Sbjct: 243 VRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPTAAVLVRRNADAAAIADTLRARGIP 302 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 ++ L + + + ++L + A ++ P + G + + Sbjct: 303 AEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDLAALWRRALTL 362 Query: 473 LVA------LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + + D I+ + L Sbjct: 363 SGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGALAGELSALRGR 422 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK---- 582 + + LV + S +++ Sbjct: 423 LGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYAERASARSSEAS 482 Query: 583 --------------------TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 ++ ++ + A +EW + + + Sbjct: 483 VAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTV 542 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 +SS L L L + A LS + L + Sbjct: 543 SRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDE 602 Query: 683 QAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + + + P S +L L + Sbjct: 603 ERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQW 662 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF------------------SEIKQLIND 781 D +P R + Sbjct: 663 ASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLPGSTTDIDHPPR 722 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT------------P 829 P + RG H ++ L++ + P Sbjct: 723 PGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQRLMCRLPKRP 782 Query: 830 EINHLMKQII---------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + + + P +++ ++ Sbjct: 783 DPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTP 842 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 V +P +M I + G D + + G + D+KTG P A + QL++ Sbjct: 843 AAVEVPFEMPIGDT--VVRGRIDAVFVDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVY 900 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 A + V FY ++ + A L++ Sbjct: 901 RLAWA--ALRGCPTSSVRTAFYY-VRSGITVVPDELPAPGELAMLLTD 945 >gi|118475773|ref|YP_891587.1| hypothetical protein CFF8240_0385 [Campylobacter fetus subsp. fetus 82-40] gi|118414999|gb|ABK83419.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus 82-40] Length = 786 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 75/402 (18%), Positives = 138/402 (34%), Gaps = 56/402 (13%) Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + ++G LESR N+D +I+ N+ + PK + K FLS ++ L + + Sbjct: 431 GGAEVTVMGVLESRSGNYDGVIIIDFNDDIVPKRSQKEMFLSSSVRKKAGLISHQDRENL 490 Query: 684 AAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 +E + + + ++ +I SR+ + + N + Sbjct: 491 QRFYYESLINSAKKVSISY---LSDEESILSRFARDFSFRIDEKYTQN---------AYL 538 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 L + ++ + + SFS + + Y R IL + F KD Sbjct: 539 NSLKSGGIKLSLEKKDIYLRHDFFATELSFSRLNTYLACKRKYYYRYILGIKEYRGFDKD 598 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 + G+ H+ + E K K +K+ F+K ID + +F Sbjct: 599 IS-SHLGSTIHSALQEYFSKFKTK-------FVKKEFLELFKKY--ENTIDTLDSEIFKA 648 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 F E + +S ++ E G+ +TG DRID + DYK+G Sbjct: 649 GLAKFEESQNTHFNSG-FSVFECEKELKNEFCGVKITGKIDRIDKSAD-TFMLIDYKSGT 706 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 PKK QLS A S S FY +K ++K + Sbjct: 707 VPKK-------SFQLSFYEALFGHNSIS----------FYYDIKNEYKFIPNDTN----- 744 Query: 983 ADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 +++ + + + +N +EK+ Y Sbjct: 745 ----TDELAQCINGLKDEFKNEVC-----FDRNEKACQYCAY 777 >gi|289747015|ref|ZP_06506393.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289687543|gb|EFD55031.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] Length = 489 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 61/473 (12%), Positives = 130/473 (27%), Gaps = 81/473 (17%) Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 18 ASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVP 77 Query: 660 KNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + L ++ L E+ + A + + + + Sbjct: 78 RGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 137 Query: 708 IPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR--------- 756 + S + + + L + Sbjct: 138 EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 197 Query: 757 --------------PKPFPPLEAQPRTYS---------------FSEIKQLINDPYAVYA 787 P P S S ++ L + P A Sbjct: 198 CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 257 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 R + + G++ H + E ++ ++ + + + H Sbjct: 258 ERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGA 305 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFA 902 + + +F++ + +S + K+ V + A+E I L G A Sbjct: 306 QWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRA 363 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 DR++ +G + I D KTG P + + QL++ A+ G D A L Y Sbjct: 364 DRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVY 422 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 + + D L+ + +V L FI+ Sbjct: 423 VGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 468 >gi|148927466|ref|ZP_01810969.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1] gi|147887190|gb|EDK72657.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1] Length = 933 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 86/868 (9%), Positives = 225/868 (25%), Gaps = 99/868 (11%) Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSI 239 L + + + ++ A ++ I++ + Sbjct: 97 LRALAHVYYEYLVAMQANTLYDFDDMILRVVHALEVFGELRFTLQEQYQYILVDEFQDTN 156 Query: 240 PATARLMSTVANHP---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 A R++ + + +L D + + Q+ Sbjct: 157 GAQLRILLNLTENEVNNGRPNILIVGDDDQAIYSFQGAEISNILTF----------QHRF 206 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + N + D + + + P+ Sbjct: 207 R--------NPAIITLADNYRSAPAILENARKVITQGQDRLETHMKSLDKTLTPHKPVTK 258 Query: 357 SDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID 414 S V L E + E + I ++ LD +N + A++T + + I ++ Sbjct: 259 SRVELAELPTKNHEYLWIVNQIKQRLDAGQNAHEIAVLTRTHSEMTHLLPYFHHADIEVN 318 Query: 415 ISAGIPLSTTLHSSIL----TSLLNAIFKLNDFM--AIATLVKHPLAKFGFPEKYLSRAK 468 + ++L +L++ + D + + L+ HP + + + Sbjct: 319 YERRDNVLDLPPIAMLEQLARALVDIAEQRFDDLNGRLPELLSHPSWRLPPLTLWKLGLE 378 Query: 469 NA--LELVALRGNKNSYDIMDLKSLVLDR--------IATQKNNTHVPHWQSRLSEEDKE 518 + + D+ ++ + + H + ++ E Sbjct: 379 AHNSRRHWVEIMLETKGPLKDIAEWLIVAAHRSMTAPLEEALDLLLGTHERQVPDNDEVE 438 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 I+PL + ++ E R + + Sbjct: 439 PTTRPSHQTEGFISPLRNHFFPHDAL-----------------------EKRPHLYILYL 475 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIIT-RLIDGETVKPKIEKSSTLFILGTLESR 637 + + + +E+ID+ + +P E + + ++ +S+ Sbjct: 476 NALRRIRFKMRDYQPERLLHLKDFVEFIDLHRKTHTPITSPRPASEDAEGICLMTAHKSK 535 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696 L F+T+ + + W + + E + F R Sbjct: 536 GLEFETVFVVNVTHSTWGSGARARGRMIPYPANLPLAPAGETDDERLRLFFVXMTRAKRE 595 Query: 697 LIYTRSLREN-NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 LI + +L++ PT+ + +L + + + + + Sbjct: 596 LIISYALQDLVGRPTLRAEFLATDNWHVIQPALPDTPESQKEAAE--HQWYENVLSVSDG 653 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLIN----DPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + S + + I+ P A + +L+ + G Sbjct: 654 SLDKLLKPTLERYKLSATHLNNFIDVTSGGPQAFLLQNLLRFP-----QARLPNAAFGLA 708 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H + + + ++ ++ L + + +FL Sbjct: 709 IHKALQRAHAHFNATGSRRPVEDILHDFETALGEQRLSNLDHEHFMQRGSDVLQTFLA-- 766 Query: 872 EKIQSSIEKIFV-NIPAKMA-IESIGIHLTGFADR--IDLLKSGFVDITDYKTGDNPKKE 927 S ++ + + G LTG D ID + + + DYKTG ++ Sbjct: 767 -ARYESFQESAIPERSFGSQGVLIEGAALTGVLDLMLID-DANKTITVVDYKTGKAARRW 824 Query: 928 TAQKLIDP--------QLSLEAAALKAGS-FSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 I+ QL ++ F L ++ ++ +I + Sbjct: 825 QGSSDIEKIKLHKYKQQLMFYKLLVEHSRDFGGRFSVGSGVLEFVEPTREGEIVRLETQY 884 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + + + + L + Sbjct: 885 DIAELERFKRLIVAVW-KRIQSLDFPDT 911 >gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX] gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX] Length = 1108 Score = 125 bits (314), Expect = 4e-26, Method: Composition-based stats. Identities = 98/1027 (9%), Positives = 265/1027 (25%), Gaps = 142/1027 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGD---VVEEKFTADLLLSYNLN 100 V T++A EL + + + ++P G+ + L+ + L Sbjct: 65 QVLGLTFTRKAAAELAERVRKRLDQLRGAGVVPDDVLDGEPTVATYNAYATRLVGDHALR 124 Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---- 156 + R++ A + + +++ + + + LA+ LA+ + Sbjct: 125 EAIEPTTRIITPA-IAWQFVHRVVSTYDGPMDAVTSAPATVVHDVLALAQELAEHLCTPD 183 Query: 157 ------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210 D + + + AL + + + L + + + E Sbjct: 184 DVRAYGDWLRERAAQLKKTPALVRDLLAV--QRHREQLLPLLEQFAQLKAEREVMDYSDQ 241 Query: 211 QIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 R E + + +++ + A L+ ++ NG V D Sbjct: 242 VALAARIAQRHPEVGRIERERYAVVLLDEYQDTSHAQLVLLQSLFG--NGHPVTAVGDPC 299 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 W + + + + + +L Sbjct: 300 QSIYGWRGASAGNLSRFPVDFPEKPDRPAPVRQLSTSFRNG-----------------ER 342 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 ++ + + D+ + V E EEA IA + +L E+ Sbjct: 343 ILEVAKRIAEPLRAAARDVPVLYPGPARAGRGRVTCALLRTETEEAEWIAEQIDRALRES 402 Query: 386 KK----------------------KSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 + A++ R ++ L GI +++ L Sbjct: 403 AEHHTAPDGLPWPEQEHRGPLSYGDIAVLCRKRAQFPVIRRALEERGIPVEVVGLGGLIE 462 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + + L + +A ++ P + G + + A EL Sbjct: 463 VPEVRDIVATLRVLHDPTAANELARILTGPRWRLGPRDLVAL-NQRAKELAEEARRDLRG 521 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + + + D + + + +D Q + L Sbjct: 522 EAAEARVDEEDPLRQTVLDLTAEAGSLLDALDDLGPPERYSATGYQRLQALSEELRTLR- 580 Query: 544 TCGNLSISDWT----KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 T + + D ++ ++ + + + FS +T + Sbjct: 581 TRISQPLPDLIMEVERVLGLDIEVGARPGRDQSAARADLDAFVDAAVRFSGSTDTPTLSA 640 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A ++ G ++ S+T+ ++ ++ L + +++ GL+ G +P Sbjct: 641 FLA--YLTSAEDTEHGLEPGERVGSSNTVKLMTVHAAKGLQWPMVVIPGLSRGQFPGVPK 698 Query: 660 KNPFLSR------------------------VMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 + + + + +A Sbjct: 699 TVKGWTGKAASLPFALRGDRDSLPELADVTVQEIKQFTAAERARELMEQRRLAYVAVTRA 758 Query: 696 HLIYTRSLRENNIPTI----ASRWLQRLLV-----LGGTDFFDNLKKRGQC--------- 737 + T S +L+ + +G + + G+ Sbjct: 759 AFSLVCTGHWWGQETQRSRGPSEFLEEIREVCETGVGQVALWTDPPDEGEPNPQLVADNS 818 Query: 738 --YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + T + ++ + + + + + R ++L Sbjct: 819 VVWPPQTDERRDAAERAAALVARYRNGEWERELALMNRALLRPAANRRIRDWARDVELLL 878 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 +++ + +T + ++ + +++ + Sbjct: 879 RHRDQEEGAPRVIEVELPDHLTVSALVSLARDPAALAQQIRRPLPRPPAPHARRGTAFHT 938 Query: 856 WRHL------------FHKISHSFL-----------EHEEKIQSSIEKIFVNIPAKMAIE 892 W + + E+ + + + V +P + I Sbjct: 939 WLERRFGQETLIDPHELPGAADETATGDADLDELQRQFEQSVWADRVPLEVEVPFETIIG 998 Query: 893 SIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 + G D + ++ D+KTG P E ++ QL+ A + Sbjct: 999 DR--LVRGRMDAVFHDPEDDVYEVVDWKTGRLPATERERRAAAVQLAAYRVAWARIADIP 1056 Query: 952 IDCRKVA 958 ++ + A Sbjct: 1057 LERVRAA 1063 >gi|254805469|ref|YP_003083690.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha14] gi|254669011|emb|CBA07403.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha14] Length = 1069 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 106/882 (12%), Positives = 228/882 (25%), Gaps = 63/882 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH--PLAKFGFPEKYLSRAKNALELVALRGNKNS 482 L+ L + + + + L++ L +FG E L + + + +R + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465 Query: 483 YDIMDLKSLVLDRIATQK----NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 L + A ++ V + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPESGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E + E +++ + + Sbjct: 526 DIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L L+ ++ Q +++ Y + RT + + Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYATAL 756 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 Q P + + + + + +D + + N + +++++ + P + Sbjct: 757 GQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP----HI 808 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + E + F + +I + Sbjct: 809 GEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850 >gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] Length = 1086 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 117/856 (13%), Positives = 224/856 (26%), Gaps = 114/856 (13%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGS 238 + L + + ++ + + +++ + Sbjct: 230 SLAPLLDLAVQYAQQKRAQGLLEFSDQVALALEVAERSQDVVDHYQDRYRVVLLDEYQDT 289 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 RL+ A V+ D H W + + S + T + Y Sbjct: 290 SVVQTRLL---ARLFGNHPVMAVGDPHQSIYGWRGASAANLARFSRDFTETADAHYF--A 344 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L + + + RS V +S + D +I + Sbjct: 345 LSTSWRNATSVLDAANVIVQPLSARSPVRVESLGARPEAPAGAVDAY--YYEHIDEEARG 402 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 VA+ A +A + + +A++ R+ R L I + Sbjct: 403 VAMWFARALAPQAWNHYNPDPDAAAPEPPTAAILFRRRSDMDRFATALGAHEIPYHVLGI 462 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 L +T L S L I + + L+ A++ + L + + R Sbjct: 463 GGLLSTPEIVDLVSALTVIHDPSAGSELIRLLSG--ARWSIGTRDLHALADLSRWLLSRS 520 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 ++K V D +A + + V + E V L K Sbjct: 521 VTQQALSDEVKQRVKDSVAVDDSASIVDA-----LDFVGEAPVSHSQLENFSPEGLSRLK 575 Query: 539 TNKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-TGS 596 S + V L+ L + + + + L + ++ S Sbjct: 576 DAAKQMAFFRSRAGLELGDLVRLLEQELLLDIEVVASRPQAQGMANLYAFHDELAGFLAS 635 Query: 597 CIKANAIEWIDIITRLIDGETVKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 AN ++ + R + + P+ ++ T+ +L S+ L +D + + L +G Sbjct: 636 DDHANLSSFLSWLRRAAQQDMMGPRSDDAEAGTVQLLTIHASKGLEWDLVAVPRLVDGEV 695 Query: 655 PKNTAKNP-----------------------FLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 P + + + + QSD + E A Sbjct: 696 PAASREGKGWVSFGKLPFAFRGDAAELPELEWENAQYQSDFDGSLKEFKAALADRHQAEE 755 Query: 692 NGTRHLIYTRSL----------RENNIPTIASRWLQRLLV-------------------- 721 ++ TR+ + P S +LQ L Sbjct: 756 RRLGYVAITRARDNLLLTGSFWSSRSKPQAPSTFLQELEERELIGELPSDPVNDENPTLN 815 Query: 722 -----LGGTDFFDNLKKRGQCYLDWTRKLDYTTK----------QPHYKRPKPFPPLEAQ 766 L D N + + D R Sbjct: 816 DVVDPLWPFDPLGNRRATVEAAAQLVTTADPGADGLWSHEIELLVAERNRAASEGQRTPL 875 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P+ S K I DP AV + P+ T GT FH + + Sbjct: 876 PQRIPASRFKDYIADPEAVALSLRRPMPEKPYR-----ATRLGTQFHEWVEARFGTSASA 930 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 T + L D+ K+S E ++ + + V I Sbjct: 931 ETLDALSLEID-------------GADVDGAADAEKLSQLQATFERSAWATRKPVDVEIE 977 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + + D + +I D+KTG P+ + QL+L A Sbjct: 978 IHVPFGDR--VIICKIDAVYADGD-RYEIVDWKTGRAPRDAADLEAKQLQLALYRLAYAQ 1034 Query: 947 GSFSQIDCRKVANLFY 962 + I ++ FY Sbjct: 1035 --WKGIAPERIDAAFY 1048 >gi|323466408|gb|ADX70095.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus helveticus H10] Length = 1160 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 110/902 (12%), Positives = 243/902 (26%), Gaps = 154/902 (17%) Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 DL + L+I + E + S+ Q+ L A++ Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 + + + + + + Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240 Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + Q ++ +L+ FL + D V S+ +P + + + Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401 L + + V L++AD+ EA +A + + + + ++ D Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345 Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455 L + I + + L +L + ++ ++K L Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLAILKTHLLIP 405 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + E + LE L N K A + + E Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVA----E 459 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569 L LVD + T L K ++ + ++ + N + Sbjct: 460 IDRLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + P ++ + L + E K + E+ +++ T + Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681 + + + + + G G P K FL+ + L L+ ++ Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634 Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736 + +A + + + +N S + QRL G + +L ++ Q Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694 Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770 L L T K K + + Sbjct: 695 ELLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754 Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 S S+++ + Y + LKL + + D G FH Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812 Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861 L+K+ + + + ++ +I D + + + H Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908 K++ ++ + + + + + + + I + ++L G DR+DL Sbjct: 873 KVARNWCKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930 Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960 K + + DYK+ I Q+ L + F++ D + Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNRFFAEEDKLSLLGA 990 Query: 961 FY 962 FY Sbjct: 991 FY 992 >gi|325128741|gb|EGC51604.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis N1568] Length = 1069 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 105/899 (11%), Positives = 216/899 (24%), Gaps = 84/899 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + A + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + ++ + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLS 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E + E +++ + + Sbjct: 526 DIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 P--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKR 756 L L+ ++ Q ++ + Sbjct: 700 LGELIDTVAAMAGIGSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 757 PKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR- 808 P+P P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFE 819 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 820 PQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|313896370|ref|ZP_07829923.1| putative ATP-dependent nuclease subunit B [Selenomonas sp. oral taxon 137 str. F0430] gi|312975169|gb|EFR40631.1| putative ATP-dependent nuclease subunit B [Selenomonas sp. oral taxon 137 str. F0430] Length = 900 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 80/698 (11%), Positives = 185/698 (26%), Gaps = 70/698 (10%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 E+ + L G + P +S+I + L +++ Sbjct: 52 ALAEVLTSGAGFL-QAYVFG-FRRFARQVLIETGGAHLPRISDIGMRILLKDILIKRAGD 109 Query: 123 LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 L + ++ + L I ++ + L + Sbjct: 110 LSAFARSVHKR-------------GFTETLGSTIAELKRYRIHPDILRTAAEQAATGRLP 156 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L I + R+ + ++ + + I + G P Sbjct: 157 QKLADLSIVMEDLAARME--GRYTDQTDRMERLARQLGTASFLRDAEIWVDGFDFFNPQE 214 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + + V ++ + T T + + Sbjct: 215 LAVFRALFHTAGAIHVTLTME--------GRRDGGHVRVNLPENTQDTGLFSRGYRAMRD 266 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 LD ++ S ++ +S L + D + + L+ Sbjct: 267 LDQILAEIDPQAASSIQLMEVQRRTHRSSLAAIEGHLFGHDRIVP------CGDGALRLV 320 Query: 363 EADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAG 418 EA N R EA + A + E ++ A+ D + +GI + A Sbjct: 321 EAANPRLEAEAAAADILRLTREQGYRYREIAVFVRDMPCYAELLTLTFADYGIPCYLDAK 380 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----------KFGFPEKYLSRAK 468 P + + +L + ++ + + ++ K P A Sbjct: 381 RPSTHHPLAELLRAAAWTAWRGWGYETMFRALRTGFFPVLGASEEETKVLAPSGDWQEAV 440 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + LE L + ++ + + E+ + I Sbjct: 441 DRLENYCLAYGIRTQRQWTATEDWDFARRAIASDAYESEENAARIAEEI-ALDAVRRRIA 499 Query: 529 QCITPLVTYKTNKN--STCGNLSISDWTKLT-----VTCLQNVCLDEHRKLPNLWFEEEG 581 + L + + S+ + + + E R + Sbjct: 500 APLALLKERLSRAQGTARTRTQSLYELLMELDVPRILETWRTAADAEGRLADAAAHRQIW 559 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + +LF +++ETG + +A ++ +I+ +D + + I ++ L Sbjct: 560 TSCMNLFDQMVETGGDEEISAHDYEEILGDGLDALDIALIPPGLDHVTIASFDQNSLAGI 619 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK---------------TAEKYIGQAAH 686 T+ + G N G P+ A+ LS + +N E+ + Sbjct: 620 RTVYIVGANAGTMPRAGAQQGVLSDAERLSMNEMFHALHEGAAPEIFGGGREQSFLERYR 679 Query: 687 DFEMANGTRH-LIYTRS-LRENNIPTIASRWLQRLLVL 722 + R L + + + S + RL L Sbjct: 680 LYRGFTAAREYLWVSYALAGSDGSALSPSPLIARLRRL 717 >gi|218768734|ref|YP_002343246.1| exodeoxyribonuclease V [Neisseria meningitidis Z2491] gi|121052742|emb|CAM09085.1| exodeoxyribonuclease V [Neisseria meningitidis Z2491] Length = 1069 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 109/900 (12%), Positives = 222/900 (24%), Gaps = 86/900 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---WLLAADFLKIASKY 194 L + LA LADI D +W D W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLGLGDDEIWQSKL--------- 171 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 W R ++ S + A + G + P +L+ ++ H + Sbjct: 172 W--RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCD 229 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + W + E + + T + L L D Sbjct: 230 VFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEM 285 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + E + L +D++N + + ++ + ++ A + E + Sbjct: 286 EIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLRELQIL 345 Query: 375 AIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L E+ A++T + + + +S Sbjct: 346 KDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQ 405 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKH-PLAKFG---FPEKYLSRAKNALELVALRGNK 480 L+ L + + + + L++ P+ + + L A V + Sbjct: 406 PLFHALSCLFDLLESRFEVDKVLVLLETAPVLRHFGLTEDDLPLLHDMVADLNVRWGLDG 465 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLVTYK 538 D + +P + + + + + L T Sbjct: 466 EMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQGVSAWYADVNQTALFGRFAAFLETLT 525 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W L+ + E + E +++ + + Sbjct: 526 DIVRIWRQPATVDEWVARCRDLLETLFQVEGDDQKAVQSLENEWVKWQAETELAQFSGQL 585 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 586 PLH--TVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT 641 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRW 715 F + E R L + R+ + S Sbjct: 642 KAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSL 699 Query: 716 LQRLLVLGGTDFFDNLKKRGQCY---------------------------LDWTRKLDYT 748 L L+ N ++ Q + D+ L T Sbjct: 700 LGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQT 759 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + P +P E + +P V+ ++ L + Sbjct: 760 PEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPF 818 Query: 809 -GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + +I + +W+ F + Sbjct: 819 EPQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQNFQTAAKQI 873 >gi|284043265|ref|YP_003393605.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei DSM 14684] gi|283947486|gb|ADB50230.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei DSM 14684] Length = 986 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 110/922 (11%), Positives = 228/922 (24%), Gaps = 134/922 (14%) Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA 184 ++ + + L A +E + L A Sbjct: 86 RVVAEAIASARLQALAPIAGTRGFLHAAGAFTAELERTLLTPQRLTAAVRAL--PDAPPT 143 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 + + L L + + A P++ G Sbjct: 144 LHEVAAIYDRYARGLERLGRVDAELFAWRALDALRARKEVWGDTPVVFYGFDDFTTLERD 203 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + T++ + + T S +L D Sbjct: 204 AIETLSRVVGAEV---TVSLTYEPGRAAFAGRARTFAELSQIATEVQELPALDDWYDEAG 260 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + E + V L+ A Sbjct: 261 RAPL-----------------------------HALERGLFEPAAARDAEAGDAVRLLVA 291 Query: 365 DNEREEAISIAIALRMSLDE--NKKKSALITADRNLAR-RVKLELTRFGINIDISAGIPL 421 ER E +A + L + ++ A++ + V+ + I + +PL Sbjct: 292 GGERAEIELVAATVLELLGDGVPGEEIAVVLRTPARSASLVEQVFGAYAIPHTLDWRVPL 351 Query: 422 STTLHSS--ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 + T + + + + ++ P + LEL R Sbjct: 352 AHTALGRGLLALARCALLPADARPADLLAYLRTP------GRLQRLELADRLELTVRR-- 403 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 ++L+ A + W R + + A +L + Sbjct: 404 ---------RALLSMEEARRAWEEARGGWPLRELDRLRGAAADGPAALLGALAREARTLF 454 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + L + E ++ ++ Sbjct: 455 VAPHRGQARVLDAAEEADARALSALLRALEELGELAAAEPRRAAELLEPEALLAALGELE 514 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + + + L R FDT+I+ GL EG +P+ Sbjct: 515 VSLG-----------------ATAREGAVLVADPLAIRARRFDTVIVCGLQEGEFPRPAH 557 Query: 660 KNPFLSRVMQSDLN------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPT 710 PFLS ++ +LN L E + + F S R+ + P Sbjct: 558 PEPFLSDDVRRELNAVAGLRLPLREDALADERYLFYATASRPRRRLILSCRDADEDGNPA 617 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYL---DWTRKLDYTTKQPHYKRPKPFP------ 761 + S ++ + L + + T + R P P Sbjct: 618 LPSFFVDDVRALLRELPERHRPLSAVTWPLDAAPTDAERERAEALAAPRELPHPIGSLSE 677 Query: 762 ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 L Q S +++ P + L+ F+ DP+ RG+ H+++ Sbjct: 678 AATALLRQREVLSAGALERYARCPVRWFVESELQ---PERFEPDPEAMARGSCIHSVLER 734 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEE 872 + + ++Q++ +E H L HE Sbjct: 735 TLARVSWPIAVAELPAIEQVVREVVAEEASAFTLGRGAAAQAAAAHEIAADVLRLLAHEA 794 Query: 873 KIQSS--IEKIFVNIPAKMA---------------------IESIGIHLTGFADRIDLLK 909 + ++ + + M + + L G DR+DL Sbjct: 795 EAEAGGAFRPAELELRFGMGDESALPALELTSAEPGDAAGGAPAEPLRLRGVIDRVDLDG 854 Query: 910 SGFVDITDYKTGDNPKKETAQKLID---PQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 +G + DYK+G K Q++L A++ + R+ A Y L+ Sbjct: 855 AGRALVRDYKSGRRQPSWPVAKWASEDQLQVALYMVAVRE-----LMGRQPAGGVYQPLR 909 Query: 967 QKFKIDCITNDKKKYSADELSE 988 + + D + + Sbjct: 910 GEDLRARGVVRDDVNAGDLVVD 931 >gi|184154512|ref|YP_001842852.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum IFO 3956] gi|251764592|sp|B2GEY3|ADDB_LACF3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|183225856|dbj|BAG26372.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum IFO 3956] Length = 1245 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 121/1074 (11%), Positives = 275/1074 (25%), Gaps = 197/1074 (18%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + P +SN+ + +A++I + + PD+ L + Sbjct: 74 SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 124 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189 + A + + ++ + DL AL ++ G + F + Sbjct: 125 SERQGFATEVTKQLVELQNANIQPADLAPDQETGIIKRALASQAGGGRASQSTVFTDKMT 184 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248 + + + + + A++ E + + + G ++ Sbjct: 185 VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 243 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V LD + Y AK L Sbjct: 244 LIQRAADTTVSLILDRDY---------------RGRELPSQNNLYYRSAKQYQDLLNLAT 288 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + S + D + V A Sbjct: 289 QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 348 Query: 369 EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 E +A +R + + ++T + + + +R I + P++T+ Sbjct: 349 AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 408 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472 ++ +L + + L+K L + A E Sbjct: 409 PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 468 Query: 473 LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L+ K D + L K +W +++ A+ + Sbjct: 469 NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 528 Query: 529 QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576 + + W + Q + L Sbjct: 529 TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 588 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633 + NA + I + +++ E+ + + LFI+G Sbjct: 589 DQVAPTEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 648 Query: 634 LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681 + + GLN+ + + + + + L++ + + + Sbjct: 649 TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 708 Query: 682 --------------------GQAAHDFEM--ANGTRHLIYTRSLRENNIPTIASRWLQRL 719 G A H + N ++ Sbjct: 709 MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNAPTTDLPDRPNPRASEDDVWSFVAAP 768 Query: 720 LVLGGTDFFDNLKKRGQ------CYLDWTRKLDY-------------------TTKQPHY 754 V G + + D R L P Sbjct: 769 AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRYDEGLTGRLNDIRDGQYAKNEAVPLQ 828 Query: 755 KRPKPFPPLEAQPR------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + T S S++++ +PY + R L L + D++ Sbjct: 829 PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 886 Query: 809 GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856 GTL H+ + ++ I++ ++ L+ ++ID FE+ N + + Sbjct: 887 GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 946 Query: 857 ------RHLFHKISHSFLEHE--EKIQSSIEKIFVNIPAK---------------MAIES 893 + ++ + + + Q+ + + V + + Sbjct: 947 SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1006 Query: 894 IG--------IHLTGFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941 G + L G DR+D LK G + DYK+ A Q+ Sbjct: 1007 TGAGLGEGAKVSLRGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1066 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 AL+ + +++ Y+RL + K+ +A+EL E + + Sbjct: 1067 NALQ----AANPGKQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1111 >gi|256825724|ref|YP_003149684.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689117|gb|ACV06919.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547] Length = 1119 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 115/1062 (10%), Positives = 257/1062 (24%), Gaps = 180/1062 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV------VEEKFTADLLLSYNL 99 V T++A EL + + + + ++ ++ ++ + L Sbjct: 63 QVLGLTFTRKAAAELSERLAARLD--ALVRAGVLAAEELQPPVVSTYNAWSGGIVAEHGL 120 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 + R+L + L P S+ + + LA + D + Sbjct: 121 RLGIEPGARVLSAVEAWQGVTD-LVTTWPGELPPGLTSIEGAVQGVLTLAGQMGDHLVSG 179 Query: 160 ETEEKKWEDLHALKN-----EKYGMWW-----LLAA---DFLKIASKYWTERLVELNASS 206 E E++ + L L + L + W E E Sbjct: 180 EQVERELDRLDELLGTVAPNRSGRPYADVLKAQATLAVRRALVPMVQRWQELKAERQVLE 239 Query: 207 PVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 ++A A + + +++ + A ++ V V Sbjct: 240 FSDQTQLSARLARGHAAVGRVERARSRAVLLDEFQDTTEAQLSVVRGVFAGDPTLSVTAV 299 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D H + + ++ + + L ++ V+ + Sbjct: 300 GDPHQSIYGFRGASARTMESFVESFDATE------RHLSTSWRNSGRVLRVANRVAEPLR 353 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 RS + + P +D V +EA + A L Sbjct: 354 ERSALDLPALRPRPGTDEGPP----------------VTASRFGTPADEARAGAAWLAEH 397 Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + +A++ R+ V L G+ ++ L + + +LL + Sbjct: 398 WAPGELGAAVLCRKRSQFPVVTEALEAAGLPYEVVGLGGLLLVPEVADVRALLGVVDDPT 457 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + L+ P A+ G + A + + T + Sbjct: 458 RGDHLMRLLTGPAARLGAADLVGLHAWRRELERRWGVRSPGDEGSAERRDHQQLAVTLLD 517 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 P + + ++ L + + ++ G L++ + + Sbjct: 518 AVLTPVEAGWTGPQGEAVSDLARARLASLAEAVTQCLGAQHRGVGELALVA-EQALGVDV 576 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + E + F++ + A + W+ + Sbjct: 577 ELASRTDVPPWRARAHLEAFHEHVATFAEAGTREPSLSA-LMGWLSAAEQHEGALEPGAV 635 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGL----------------NEGVWPKNTAKNPFLS 665 S + +L S+ L +D + + GL E V T + Sbjct: 636 EVDPSAVQVLTVHASKGLEWDAVWVPGLVAGTFPSGTGTVRPEGPEWVARPATDSAWWAP 695 Query: 666 RVMQSDLNLKTA------------------------------EKYIGQAAHDFEMANGTR 695 L+ E+ + + +A Sbjct: 696 ASGMLPFALRGDAPSLPEWSLPADPDKADFETAMKDFARANGERGLQEERRLAYVAVTRA 755 Query: 696 HLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + PT S +L +L + + + T P Sbjct: 756 RRLLHLSSAVWGTSAAPTPTSDFLLEVLDDCAPGTWVEMPPTDPVPENPVTATPRTALWP 815 Query: 753 HYKRPKPFPPL----------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + S L D R + + + Sbjct: 816 RPEAEDLEHHAHAAAAAEVGLALETAPGSEPGWTGLAEDSREHLLRFRQDVRLLLAERDA 875 Query: 803 PD--------------------------------------RTDRGTLFHNIITELIKKRI 824 D +GT FH + Sbjct: 876 ADQPDIEPLRHVSTSSLVALARDPGARRFLARPVPTPPARAARQGTDFHAWVESQWAPAR 935 Query: 825 NKNTPEINHLMKQIIDSH------------------FEKENLPPHIDIIWRHLFHKISHS 866 + P++ + D+H + + Sbjct: 936 LFDVPDLPQESQGEWDAHEERDAQEERAAPGAPQDGLALDGPRLRTRAPGEADLRRFQEH 995 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI------DLLKSGFVDITDYKT 920 F+ E S +V +P + + G+ + G AD I + + D+KT Sbjct: 996 FVASEW---SGRTPTWVELPLQTNVA--GLTVRGRADAIFPATRAERDAGLEWVVVDWKT 1050 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 +P++ QL+ A ++ ID V F+ Sbjct: 1051 SSSPREAEVGAA-AVQLACYRQAFA--AWRGIDPATVGGAFF 1089 >gi|325204677|gb|ADZ00131.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M01-240355] Length = 1069 Score = 125 bits (313), Expect = 5e-26, Method: Composition-based stats. Identities = 103/885 (11%), Positives = 230/885 (25%), Gaps = 69/885 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L+ L + + + + L++ + L A V Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ ++ Q +++ Y + RT Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPL---QAFSRRYFQEGGRSDGIFGTRTDYA 753 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + + Q P + + + + + +D + + N + +++++ + P Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + E + F + +I + Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850 >gi|215405208|ref|ZP_03417389.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987] Length = 498 Score = 125 bits (313), Expect = 5e-26, Method: Composition-based stats. Identities = 59/473 (12%), Positives = 129/473 (27%), Gaps = 81/473 (17%) Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A+ ++ +T L + + +L + +D +++ GL +G+WP Sbjct: 27 ASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVP 86 Query: 660 KNPFL------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + L ++ L E+ + A + + + + Sbjct: 87 RGGVLGTQRLLDELDGVTKDASMRAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 146 Query: 708 IPTIASRWLQRLLVLGGT--DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 + S + + + L + Sbjct: 147 EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 206 Query: 766 QP--------------------------------------RTYSFSEIKQLINDPYAVYA 787 T + S ++ L + P A Sbjct: 207 CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 266 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 R + + G++ H + E ++ ++ + + + H Sbjct: 267 ERHGGTNTRE------LPSAVGSVLHALFAE-----PGRSESQLLAELDR-VWGHLPFGA 314 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFA 902 + + +F++ + +S + K+ V + A+E I L G A Sbjct: 315 QWYSAN--ELARHRAMIQAFVQWRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRA 372 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 DR++ +G + I D KTG P + + QL++ A+ G D A L Y Sbjct: 373 DRLERDPAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVRAGDEPGGARLVY 431 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 + + D L+ + +V L FI+ Sbjct: 432 VGKSGAAGVAERKQDP-------LTPAARDEWRNLVRQLAAATAGPQFIARRN 477 >gi|313888221|ref|ZP_07821895.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845911|gb|EFR33298.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 870 Score = 125 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 68/477 (14%), Positives = 158/477 (33%), Gaps = 43/477 (9%) Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIE 623 E L ++ +E + +++ I+ + ++ + Sbjct: 407 ALERDPESPLIRDQRFLEELDDVFIKMEALREFYKSIDLYDFVLILKKYMEKIRLDEVQ- 465 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYI 681 + I + +F LIL G +E + S+ + +L L Sbjct: 466 NLEGIEISSQASNYYRDFKNLILIGYDETYQDDKRSNFIYKQESQEVMEELGLVKDNFNR 525 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 A +++ L+ S R+ S+ L L++ + + K L Sbjct: 526 DYAYLIYDILV-AEKLLILCSDRDKG----FSKLLNSLILDLDLEVEEVKKIYETDKLYR 580 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 TR++ + + + R YS ++ L + P R+ ++ + + Sbjct: 581 TREVKENSYLIDAGQLGEI-NKKISERPYSVTDFDILKDCPRRFLFERVYRIGKLEKDYE 639 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 D D G +H ++ K+ + ++ ++ ++ + + D + Sbjct: 640 DRFYIDAGEKYHKVLETYFKQEEGFDEDKLLKIILEV--ENLGDFDDLSFFDKLSVLNSQ 697 Query: 862 KISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 KI +++ + + Q+ + + + I G+ + G DRID+L + DYK Sbjct: 698 KILGDYIKKDLEGQAKYGYKPAYFEEGFETEIN--GLRIRGRIDRIDVLGDKEIL-MDYK 754 Query: 920 TGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK- 978 KK+ +L Q+ L A A + +K++ Y +K+ I N + Sbjct: 755 RSGVKKKKEIDELKSFQMPLYAIA------RKKLGKKISMANYGSIKRGEIATVIKNSEF 808 Query: 979 -----------KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 +L K ++ + + +++G+ S +Y Sbjct: 809 LPKDDKGRYYMTDEDLSDLLNKFEAEIVRLTSNIRSGDYESTS-------DCKNCDY 858 >gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1] Length = 1151 Score = 125 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 97/828 (11%), Positives = 217/828 (26%), Gaps = 119/828 (14%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGST 236 + A +LKI + + L+ + + L++ ++ + I+I + Sbjct: 343 QICATYLKIYAD-LKKANGLLDFDDLIERTLYLLQRKGASQWVQYKLDRGIDHILIDEAQ 401 Query: 237 GSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + P +++ +A H N + D + ++ Sbjct: 402 DTNPEQWQIIQLLAQEFFADYSQHTNIRTIFAVGDEKQSIYSFQGAEPENFAKNGRMFQK 461 Query: 289 STH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 YS D L + N + + + Sbjct: 462 QVQRINQKFEKIQLHYSFRSTADILKGVDLVFETPENYKGLSADNVKTVHEPVRINSPGE 521 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREE-----AISIAIALR---------MSLDE 384 + D + + + + + + D A +IA L L Sbjct: 522 IILWDTISKETNKLPDDW-HLTVDHLDTPEIRLANKIAATIANWLHSGEMLPAKGRLLRA 580 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + + + L + + + + L++ + L +L + + D + Sbjct: 581 SDILVLVRKRHDQFVPALSRALKLHNVPVAGADRLQLTSHISVRDLMALAQFVLQPQDDL 640 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 ++A ++K PL Y AK +L + D + T + Sbjct: 641 SLACVLKSPLFALSEDALYHLAAKRTGSLWQSLCTHASSHVSYKDAFENLSKY-RTFVDK 699 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 V + S + DK +L + L + + L+ Sbjct: 700 MPVFEFYSHILNNDKGRQKILARLGSEANEILDAFMDYTLTIQKTG-----LPGLQAFLE 754 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + ++ L + + + +++ + ++D Sbjct: 755 TLSANKPEIKRELD-----QNHEEVRIMTVHAAKGLESAVVFFVD--------------- 794 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 I T +F T L G +W N + + L+ Sbjct: 795 ---PGSAIWDT--RYTPHFFTFPLNGRQALIWRPNAQFDT----KFKKALSYLKERAEEE 845 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + + + WL+ L+ +K + W Sbjct: 846 YKRLLYVGMTRAEDRLIVC--GYSGQQENPNTWLK-LVKKALQPHTVAIKDPTEDVAAWR 902 Query: 743 ------------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN---------D 781 LD + P P + K L D Sbjct: 903 YSITPSSTLINKEILDEGNQTLP-----PLPDFFHHKMPLEPALPKPLRPSVASLFIDVD 957 Query: 782 PYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + + L + + + G L H ++ L + + + Sbjct: 958 AESFPNQTHLSISPVLGEKNTNKIFTIEYGNLVHRLLQYLPECPPQQRFDYAQRYLNI-- 1015 Query: 840 DSHFEKENLPPHI-DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 K + P I K+ + H + + S + V++ + I + Sbjct: 1016 -----KASHWPEIQREKALQQVCKLLEN--PHLKSLFSDNSRAEVSLTGTLKIHGKEQII 1068 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALK 945 +G DR+ + + V D+KTG P+ E T Q++L L+ Sbjct: 1069 SGQIDRLCVTQD-SVLFADFKTGIPPEDETTIAPNYLLQMALYRKLLQ 1115 >gi|150401988|ref|YP_001329282.1| UvrD/REP helicase [Methanococcus maripaludis C7] gi|159906221|ref|YP_001549883.1| UvrD/REP helicase [Methanococcus maripaludis C6] gi|150033018|gb|ABR65131.1| UvrD/REP helicase [Methanococcus maripaludis C7] gi|159887714|gb|ABX02651.1| UvrD/REP helicase [Methanococcus maripaludis C6] Length = 946 Score = 125 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 116/955 (12%), Positives = 291/955 (30%), Gaps = 138/955 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + R +I ++ LVE YDP + + T +A EL+ + G + Sbjct: 29 PGTGKTRTIIEKVV--YLVEELGYDPN------KLLVVTFTIKAADELKDRLRKRLGDRV 80 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 + I ++ + + P N + E+ + + D + Sbjct: 81 ETM-QISTIHSFCQRML--------EMFPEYHNYGSVFEVMDELDQFIYV--DNNYRGFG 129 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 + + + I L + +++ + L + K L + L + Sbjct: 130 LNGIEERLETGKRIRFVDKLTNFYNLLTENDIDPIALKTYYSGKRS---LKTEELLTESY 186 Query: 193 KYWTERLV--ELNASSPVGYQ-----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 +Y+ L + Q + L +A + ++ I + + P + Sbjct: 187 EYYEAELDKTDPKKLDFAMLQKQFYHMLLNNEDALNSVREMFDYIFVDEYQDTNPIQDAI 246 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + +A V+ D + + ++ + + + KL + Sbjct: 247 IRLIAEPKFNITVV--GDEDQSIYGFRGASVENFRQFLERYSGPEKIKAHMIKLEENFRS 304 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 E V K P T + + + + LI ++ Sbjct: 305 PEEIVDAFD--------------KFMGPHRTFEKKIISKNGHYSDPV--------LIVSE 342 Query: 366 NEREEAISIAIALRMSLD----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 + EE+I IA + + + + L + RN A + EL I + L Sbjct: 343 SPEEESIKIAEWIEKLITKHNVDYGDIAVLFKSVRNHANELVDELMERNIPYVVYGDSSL 402 Query: 422 STTLHSSILTSLLNAIFKLN------DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 + + I + + +L+ + + + +E + Sbjct: 403 IDQPEIRSVIHAMACINEYELNEKVSRNRKLMSLLDYDILGSDLLNLD----EKTVEKLD 458 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 RG + + + + ++ K+ + + ++ +++ K+ + + ++ L Sbjct: 459 YRGEPHKFCDVYNYEGLKNQGIATKDIDTLINIKNIRNKDVKKPQLDIFYELMDATGYLR 518 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + E K Sbjct: 519 RLFEASKDEADKYNAEKAELQLKNLAKFTTILEKFKKNT--------------------- 557 Query: 596 SCIKANAIEWIDIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + +I ++T++ D E + I+ +++ L F ++LGG+ E + Sbjct: 558 --GSNSFKSFIYLLTKIPDNKLEDAASPEGQDVVKIMTIHQAKGLEFPVVVLGGVTERRY 615 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 A + ++ Q +N + + + + L+ ++ + S+ Sbjct: 616 G-ARADDRLVNIPKQFMMNKHDVDFDEEVRRVFYVGMSRAQKLLTISAI--DGRNRKMSK 672 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 ++ + G+ D+ + ++S Sbjct: 673 FIGEIGDYKFISPSAFTATFGED--------DHYVPVD-------------EKIRMTYSS 711 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 + ++ P+ Y +L ++ G++ HN + +L +++ Sbjct: 712 VNYYMDCPFRFYLYYVLGFVTPEWERQ-----IYGSIIHNCLKKL-HIMMSEGKNISIRD 765 Query: 835 MKQIIDSHFEKENLPPHIDII--WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + I+D + ++EN + + + +HK + F+ E + V P Sbjct: 766 IMGIVDKYCKEENTKKYRNSVIDLVRDYHKNAKEFI---------GEIVDVERPFTYI-- 814 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK-LIDPQLSLEAAALKA 946 + + + G AD + K+G + I D+K+ K+ + ++ QL AL Sbjct: 815 NSDLVVNGQADLVIRNKNGELCILDFKS---MTKKGIESTNVEIQLQTYGMALSK 866 >gi|325138694|gb|EGC61246.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis ES14902] Length = 1069 Score = 125 bits (312), Expect = 6e-26, Method: Composition-based stats. Identities = 104/885 (11%), Positives = 231/885 (26%), Gaps = 69/885 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L+ L + + + + L++ + L A V Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ N ++ Q +++ Y + RT Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + + Q P + + + + + +D + + N + +++++ + P Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + E + F + +I + Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAE 850 >gi|296169028|ref|ZP_06850690.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896287|gb|EFG75946.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 638 Score = 125 bits (312), Expect = 6e-26, Method: Composition-based stats. Identities = 81/659 (12%), Positives = 168/659 (25%), Gaps = 102/659 (15%) Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 +AG PLS + L ++L A D L+ P+ R Sbjct: 3 AAPAAGGPLSEEPAARALLTVLAATADGLDGERALALLTGPIGGVDPVSLRQLRRTLQRA 62 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 D L+ D +A + + A Sbjct: 63 HPDRAPG-------DFADLLADTLAGAAPPVGPQFRPVQRVRAVLDAAARCHRAGQDPRY 115 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L S + ++ + + +L ++ + Sbjct: 116 TL----------WAAWHRSGLQRRWLSAAERGGPAGAQATRDLDAVTALFDITDQYV--- 162 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 A+ +D + L + + + +L + +D +++ GL EG Sbjct: 163 --SRTSGASLRGLVDHVAALHLPGVRQEPVSTVEQVRVLSAHAALGHEWDLVVIAGLQEG 220 Query: 653 VWPKNTAKNPFLSRVMQSDL------NLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRE 705 +WP + L D+ + + + A R + ++ Sbjct: 221 LWPNTVPRGGVLGTQRLLDVLDGVTGDASVRAPLLAEERRLLVAAMGRARRRLLVTAVDG 280 Query: 706 N-----NIPTIASRWLQRLLVLG--------------------------------GTDFF 728 + + S + + D Sbjct: 281 DPGGADGEAALPSTFYYEVAQWAGDDADAAASQPVSAPRVLSAAALVGRLRGVVCAPDGT 340 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR--------TYSFSEIKQLIN 780 + R R P+ T + S ++ L + Sbjct: 341 VDDADRACAATQLARLARAGVAGADPASWHGLVPVSTAEPLCGGDDAVTLTPSTLQMLND 400 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P A R + R+ G+L H ++ E + E+ + + Sbjct: 401 CPLRWLAERHGGTNPR------ALRSTIGSLLHALLAE-----PGRTESELLAELDR-AW 448 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGI 896 H E + +FLE + + ++ ++ V + A+ + + Sbjct: 449 RHLPFEAEW--HSANELARHRAMIEAFLEWRAQTRGALTEVGVEVEIDGALAASGDRGEV 506 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 L G DR++ +G + I D KTG P + + QL++ A+ G Sbjct: 507 RLRGRVDRLERDAAGRLVIVDIKTGKTPVSKDDAQQHA-QLAMYQLAVAEGLVDAGTEPG 565 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP--FISHLR 1013 A L Y+ + D L+ + +V F++ Sbjct: 566 GARLVYLGKTGASGVTE-------REQDPLTPAARDEWRRLVRRAAEATAGPRFVARRN 617 >gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] Length = 1209 Score = 125 bits (312), Expect = 6e-26, Method: Composition-based stats. Identities = 93/920 (10%), Positives = 203/920 (22%), Gaps = 74/920 (8%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 D L + + V RL L L + P S Sbjct: 255 DAAFCDSAMSLAAASSKPTDVKFRDRLQALRDAGTPDARLAALKALCLTAKGTPYKPSSV 314 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTERLVE 201 A +A L D + ++ + + L + + A + + Sbjct: 315 A-TKAVADALPDFPERLQQLADHVQAIDERLASLRLFRASAAALVIADAFERDYAILKRR 373 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAGSTGSIPATARLMSTVAN-- 251 + ++I + + P ++M + Sbjct: 374 RGRLDFEDLIVRTAELLTRSAASAWVHYKLDQGIDHVLIDEAQDTSPRQWQVMRQLVEEF 433 Query: 252 ------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN---TTYSTHPQYSLAKLLDF 302 V D + + + + ++ +L Sbjct: 434 FAGAGAREVTRTVFAVGDEKQSIYSFQGASPRMFADEQRAMRKRAEAAEARFEEVRLTQS 493 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM--------RNTDILENKIPNIQK 354 + ++ + V + R + S P + + P + Sbjct: 494 FRTAADVLRAVDTVFADAENRKGLSSGDEPPAHQTARGEAPGLVEIWPVYQAEEQPQSRD 553 Query: 355 CFSDVALIEADNER-EEAISIAIALRMSLDEN------------KKKSALITADRNLARR 401 + A++ A IA + + + L+ Sbjct: 554 WLQAIDYEPANSPANRLARRIAAQIGDWIGDPIAHKGAVRPLAAGDVIVLVRKRSGFVAA 613 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + L GI + + + ++ + L +L + D ++ A ++K P F + Sbjct: 614 MAKALRDAGIPVAGADRLVITDHIAVKDLMALGRTVANFEDDLSFAAVLKSPFFDFTDDD 673 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 G + L + T + R + + Sbjct: 674 LMGLALSRERHEPLSLGLRRICGPEGLARVPEFVPDET---TEAFLAKCRYALTRLDELR 730 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + ++ L + Sbjct: 731 ARSGFETIFAFYARILGPEGGRARLTRRLGSDSGEVIDAFLDLALADEDAGEPGLDAFLA 790 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ S E I L + SRL+ + Sbjct: 791 RLAAAPPSIKREMEQGRGEVRIMTTHASKGLEAPVVFLVDPGSAP---FSHAHGSRLMEW 847 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + A + + + + A + + Sbjct: 848 PDMPGLVPGMSPGFLWRAAKDLENDAIAALKEAEKARAEEEYRRLLYVGMTRAADRLVVC 907 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL----------DWTRKLDYTTKQ 751 + P S WLQR + + + G + Sbjct: 908 GVSGVRGPNENS-WLQRAQLALSAECEPVIDADGATIAWRFGAAGTGDKLAAAIPSQPDA 966 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEI----KQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 P P PP PR S S + +D A + + Sbjct: 967 PAPLDLSPLPPEILPPRPLSPSSAGEGTEIAEDDAIPPEAAQAFVSPVLSQTGDPSFAIR 1026 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 RG H ++ L + + + ++ + + F Sbjct: 1027 RGLAVHKLLQVLPEMAADAREAAARRYLATAAPEMRAGDHDALVASALAVMDDPGFAAIF 1086 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--K 925 + V + ++ + + G DR+ + + V I DYKT P Sbjct: 1087 AA--------GSRAEVPVAGEITLAGRSYRVNGTIDRLAVTTT-RVLIVDYKTNRPPPAS 1137 Query: 926 KETAQKLIDPQLSLEAAALK 945 QL+L LK Sbjct: 1138 LAEVSPAYIMQLALYREMLK 1157 >gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca] gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39] Length = 1070 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 103/905 (11%), Positives = 219/905 (24%), Gaps = 132/905 (14%) Query: 154 DIIDIIETEEKKW---EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGY 210 D + + E K E+L + + LK A + + L +L Sbjct: 261 DALKALREELVKPCIKENLINAEVGEADHKLAEMLAALKEAYREVKDYLQQLKWQ---AR 317 Query: 211 QIALMRAEAEHLMKGTKGPII------------IAGSTGSIPATARLMSTVANHPNGAIV 258 + E L P I + + P ++ + + IV Sbjct: 318 VLTFADLEIGALTALQNNPTIQLYYQQRWRTFLVDEFQDTNPIQGEILELLTQTADLTIV 377 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + N + Q L ++ + ++ V + Sbjct: 378 ---GDKKQSIYGFRRADIQVFNKFRKRIIDN---QGDEIILNQSFRTHQQLINQINQVFS 431 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + G ++ S I E IA L Sbjct: 432 PLLGDLRQDLEAVRIDSPSPRETLQIFVIPKTAETDVTQ--------RRIAEGKLIAKTL 483 Query: 379 RMSLDEN---------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 + LD A++T L I + S G L Sbjct: 484 KEMLDNQTPVFDKETQQLRPIQPGDIAILTRTWGPLDSYGEALAAAQIPLAPSGGGNLLE 543 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 T + SLL + D +A+ L++ P + + L + N + + Sbjct: 544 TQEAKDAWSLLKFLADPGDDIALVALLRSPFFTISDRLLFKVSSNLKLSHQSTSENMSWW 603 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 ++ + K + + E + + D + + + Sbjct: 604 KFLN----SGSPVEFTKAIDPLKRLLKKRHIEPPSRLLQIADRLTGYTATIANLPASNRR 659 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + ++ ++ R T+ S + A Sbjct: 660 LADFNGFRELVQILEQGTDDLFGVVRRLKRLKDKAV---TVERPPINTSNAVSLMTIFAA 716 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + ++ ++ + FD + ++ Sbjct: 717 KGLEWPMVVVADLSRPTPNSSVPV------------YFDPEYGVAIACKDEDQDRKDPVI 764 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + + + AE + +R I + +E L + Sbjct: 765 YNWLKYRHQQREEAEALRIL----YVALTRSRDYILLTASQEKGNYLNK----LYLGLQA 816 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 L+ + P + + + + + P Sbjct: 817 ANIPITTLEINSDDIIPPVPPSPLPPAINP---PLLTEAMTSGLFELPVTSLSEYKRCPT 873 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 IL ++ G L H + I+ +Q++ Sbjct: 874 RFKFIYILGHPGFS--EEANQGMRIGQLVHKALEYDIRDIDKLQKFAEYGTDEQLLSEAI 931 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + + F +HE ++ ++ +G+ G AD Sbjct: 932 CLAIDFDNTEEF---------KIFRDHEINR-----------EIELKLDILGVSFNGIAD 971 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 I G + DYK+ + + QL A AL A++ Y+ Sbjct: 972 LI-----GDNWVLDYKSDRV----MRPEHHNLQLWAYAKALNYSE---------AHIAYL 1013 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 R KQ + + +K + A+ IV + G P + S ++ Sbjct: 1014 RHKQLYTLPPKLLEKTAHEAE-----------SIVRDIVEGHYP----PKPSLENCQTCR 1058 Query: 1024 YDHLA 1028 Y + Sbjct: 1059 YREIC 1063 >gi|308389838|gb|ADO32158.1| exodeoxyribonuclease V [Neisseria meningitidis alpha710] Length = 1069 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 107/885 (12%), Positives = 231/885 (26%), Gaps = 69/885 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N D+ K NI + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L + + + + L++ + L A V Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ ++ Q +++ Y + RT Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + + Q P + + + + + +D + + N + +++++ + P Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + E + F + +I++ Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850 >gi|240017063|ref|ZP_04723603.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA6140] gi|240118423|ref|ZP_04732485.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID1] gi|268604138|ref|ZP_06138305.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID1] gi|268588269|gb|EEZ52945.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID1] Length = 1069 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 105/875 (12%), Positives = 212/875 (24%), Gaps = 80/875 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVDRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ N ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832 E + +P V+ ++ L + I I+ R + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|300783060|ref|YP_003763351.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792574|gb|ADJ42949.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 1080 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 110/1049 (10%), Positives = 272/1049 (25%), Gaps = 142/1049 (13%) Query: 46 SVTIYVPTKRAIQELRSE------------FIEITGKKSTILPIIKS--LGDVVEEKFTA 91 V T++A ++L ++ + + + + + Sbjct: 70 RVLGLTFTRKAARQLGERVRARLRRLAGSGLLDRLDPTGGLRSTVVAGEPTVLTYHAYAG 129 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 LL + L PV RLL I + +L ++ P A+ + LA Sbjct: 130 RLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNEL--DTDRVPPTVTADLLALAGE 187 Query: 152 LADII---DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI------------ASKYWT 196 L + + + + + G L +I + Sbjct: 188 LGEHLVSTEQLAEYTTWLCRVIENAPRAKGQRAALPQKLTEIMAAQHFRLALLPLVDDYH 247 Query: 197 ERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVAN 251 R A + + + G +++ + A L+ + Sbjct: 248 RRKRNEGALDFADQMSLAAQLAGGYPSVVRGERERYGAVLLDEYQDTGHAQRVLLRALFG 307 Query: 252 --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 V D W + + +++ + A L R Sbjct: 308 GVENPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRFDGERLVPAHEFGLLTSFRNP 367 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + L + DI +P+I+ + V Sbjct: 368 PEILDLANAIAEPLRARGLGVERLRAREGAGPADIACALLPDIRAERAWV---------- 417 Query: 370 EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A ++A ++ K +A++ R + EL G+ +++ L Sbjct: 418 -ADALARRWYAHQEQTGKPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEV 476 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L S L + A A L+ + + + + + + Sbjct: 477 ADLVSTLKVLADPLSGSAAARLLTGARWRLSAADVAALWRRAGELSSPEKPDTPELVVER 536 Query: 488 LKSL-VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 ++ ++D I + + L + Q + L Sbjct: 537 VEQAGLIDAIDEPGDPARYSDEGYKRIRRIGWELAALRRRLDQSLPEL------------ 584 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 ++D + + ++++ +L + + + +++ T + + + ++++ Sbjct: 585 ---VADVERTMLLDVESLARPGSAGRAHL---DAFAEVVTDYAETAPTATLL--SFVDYL 636 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS- 665 + DG T + +L ++ L ++ + + L V+P + +L Sbjct: 637 NTAAHAEDGLTPGEVEVVPDRVQVLTVHSAKGLEWEVVAVPHLVHDVFPGRRRSSSWLRT 696 Query: 666 ------------------------RVMQSDLNLKTAE------KYIGQAAHDFEMANGTR 695 + L+ E + + + + Sbjct: 697 ATSLPAKLRGDAEDLPELRIAEGYDRKEVQEGLELHEAGFVEREQAEERRLCYVALTRSE 756 Query: 696 HLIYTRSLRENNIPTI---ASRWLQRLLVL--------GGTDFFDNLKKRGQCYLDWTRK 744 H + N + S +L + + + + + +R Sbjct: 757 HALIVSGHWWNESSSRVKGPSEFLTEIADVVRETGAGQLAEWAPEPTEDDENPLVSDSRA 816 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSE---------------------IKQLINDPY 783 + +R +E + S +++ Sbjct: 817 ARWPVDPLSDRRTGVQTGVELVSEALASSPDEEASEEDDDPDGWLTDTDVLLEEWARKDD 876 Query: 784 AVYARRIL-KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 V + +L D + + T L ++ Sbjct: 877 HVKLVPLPSRLSVSQLVALADDAARLAADLRRPLPVEPNSFARRGTEFHGWLERRFAGDQ 936 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + P E E+ +S + V + +E G+ L G Sbjct: 937 LIEIDDLPGAADFGEAPDADFEELQTEFEKSEWASRVPVAVEVTFSADVE--GLTLRGRM 994 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF- 961 D + G + D+KTG P + + QL+ A + + +V F Sbjct: 995 DAVFADPEGGWTVVDWKTGAVPPESRIPA-LSVQLAAYRMAWA--ALKNVPVEQVRAAFH 1051 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKS 990 Y+R + + + + + S ++ Sbjct: 1052 YVRANRTIRPADLLDPEALRSLLRDIPEA 1080 >gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] Length = 984 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 123/1031 (11%), Positives = 273/1031 (26%), Gaps = 163/1031 (15%) Query: 31 VENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPI-IKSLGDVV 85 + ++ P ++ + T++A + + S + + + + I ++ Sbjct: 48 IARLIHEGAKPE---NIIAFTFTEKAAESIKRRVASALEKAGLPVALVGAMYIGTIHAFC 104 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + + N RL L+R + + ++ +NA Sbjct: 105 QNLLGSMNAKYRQYEVLNENRLRLFLLSR----YYELELNALQANRNARMFQTIAEVSNA 160 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 +A + +D IE E+ L K RL Sbjct: 161 WKMANDEMLSLDEIEEEDAP----------------------LGSCLKNINNRLNSDQYI 198 Query: 206 SPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++ A + + +++ + RL+ + + N V+ Sbjct: 199 DFSLMIRLVVEALEANNTEIYAALESANHLMVDEYQDVNISQERLIRGLYSRLNSLFVV- 257 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTT-YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D W ++ STH + + + + + + + Sbjct: 258 -GDDDQSIYGWRGADVRNIIEFDQRYPNCSTHTLSTNFRSTNTIVSTSDRFIQHQLSTAR 316 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKI-PNIQKCFSDVALIEAD-NEREEAISIAIA 377 + + S + + T E + N IE D +ER S Sbjct: 317 IDKAPISNSDGNIQHFGNLWFRTKQDEAEWIANRINQLLGTKYIETDGSERGLTKSDFAI 376 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 L S+ + R L++ IN I A + LH+ L ++ + Sbjct: 377 LMRSVQGGTRN-----GGAPYHRDYTNALSKADINYIIEAEGSIFERLHARTLRDAMSLL 431 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + + DL + +A Sbjct: 432 RSPGYP------------------------RREAINFFNSNILPVFPNADLNKFLEI-LA 466 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 N H P +R + L L++ T ++ Sbjct: 467 DWNNQIHRPIGGARRKVYPQLLVHELLEAFRISTTEFQNHEQVMRDL------------- 513 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + LD + ++ + +++ + + E+G T Sbjct: 514 -GVFSGIILDVEKVFVSIDTGQRYQSMLNFLENVAESGY------------------DTT 554 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL--- 674 + + + I + + L F + + + + +P + + L Sbjct: 555 QVELMSRPDAVTISTVHKMKGLEFPVVFIVDVVQQRFPGKRSSYNGWLPLNLIQNPLSRG 614 Query: 675 KTAEKYIGQAAHDFEMANGTRH-LIYTRS--LRENNIPTIASRWLQRLLVLGGTDFFDNL 731 G+A + L T S P S + + L + Sbjct: 615 LYQSNIFGEARLFYTALTRAERFLYVTGSSIQPGLQRPKNPSPFKLIIQGLNDPEVIT-- 672 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 D T + +R + P ++ + SF+EIK + P R+I Sbjct: 673 --------------DTTHLPDNIERIEQRPRIDEESMPTSFTEIKDYLECPMKYKFRKIY 718 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 G H I + N +I + F +++ P Sbjct: 719 GYSPAVPELFG-----YGLTTHTAINRAHQLFANAAP--TREEAGEITEDVFHLKHVFPS 771 Query: 852 I---DIIWRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESIGIHLTGFADRID 906 S + + + ++ + ++ + +TG D + Sbjct: 772 RDPEREGPYERAKNASKRLVGNYAEGYPEDFVQSRSLEQRFEIKANNA--LITGSIDLLL 829 Query: 907 LLKSG----FVDITDYKT-----GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 + + D+K+ G + QL AA + G ++ Sbjct: 830 REDNNGNILEARVIDFKSMDFPEGQLNPFFWINLSLQVQLYAYAADIVLGENAKTGS--- 886 Query: 958 ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEK 1017 + L + + + N DE E +++N+ V + GE P +R S Sbjct: 887 -----VHLLKALSTEEVPNRVNVPITDEAIESAIQNIEWAVNRILEGEFP----MRPSVG 937 Query: 1018 SNIQSEYDHLA 1028 + ++ + Sbjct: 938 KCEECDFRKIC 948 >gi|302542687|ref|ZP_07295029.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus ATCC 53653] gi|302460305|gb|EFL23398.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus ATCC 53653] Length = 499 Score = 124 bits (311), Expect = 8e-26, Method: Composition-based stats. Identities = 56/450 (12%), Positives = 120/450 (26%), Gaps = 53/450 (11%) Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + E + + ++ + I +T+ +I + + ++ S+ L + Sbjct: 3 ALFETAARAEERTGGRGALNFLDELDAQDIAADTLSRRIARPDAVRLMTAHRSKGLEWRL 62 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHDFEMA--NGTRHLI 698 +++ G+ EG+WP + L L T + + F +A L+ Sbjct: 63 VVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARDRLV 122 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 T + SR+L L V +R +L TT P Sbjct: 123 VTAVKAAADDGDQPSRFLTELGV--PPVDVTQRPRRPLSVAALVAELRATTVDPDASDAL 180 Query: 759 -----------------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793 P Y + + + D A L Sbjct: 181 REAAAQRLARLAALRDEDGRPLVPAAHPSGWWGLYEPTHSEVPLRDRDRPVALSGSALDQ 240 Query: 794 ------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 + G + H ++ + + + + Sbjct: 241 LVNTCSLQWFLGREVKADAPSTAAQGFGNVVH-VLADEVASGRTPADLAVLMERLDSVWD 299 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLT 899 + FL + + + +++ + + Sbjct: 300 ALAFDAPWKSRQEKEHAR--AALERFLRWHVMERGGRTAVASEHGFDVTLDAETYQVRIR 357 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI---DCRK 956 G DR++ G + D+KTG + PQL++ A++ G+ + D + Sbjct: 358 GSMDRVEADAEGRAYVVDFKTGK-QSVTRGEVAHHPQLAVYQLAVREGAVDGLFGDDRPE 416 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYSADEL 986 ++L+Q K A E Sbjct: 417 PGGAELVQLRQGAPKKEGGETVPKVQAQEP 446 >gi|223983368|ref|ZP_03633554.1| hypothetical protein HOLDEFILI_00834 [Holdemania filiformis DSM 12042] gi|223964540|gb|EEF68866.1| hypothetical protein HOLDEFILI_00834 [Holdemania filiformis DSM 12042] Length = 897 Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 92/662 (13%), Positives = 191/662 (28%), Gaps = 68/662 (10%) Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRF 409 P +A N R+EA A + + ++ ++ + V+ L R+ Sbjct: 180 PLPSAQPRTTRFYKALNSRQEAEGAAQLILHEEWKPEEVMIILCDSQRDGSLVRSVLARY 239 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 + +S S IL +A L +I ++K Sbjct: 240 QLPAAQ-----VSYQKPSKILR-CFDAFVALTRAPSIEAVLKT----------------- 276 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIAT-QKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L+L A + + L V D+ + THV + + L+ Sbjct: 277 -LQLKAYPVLISEAYVQYLTQFVFDQNDLCEPVFTHVQRALETNTLLNTIEKENLLRLEA 335 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 Q + ++ +S+ L+ E + Sbjct: 336 QAQSVHEQLLPWLLPLLEDVPLSEKLNRCYELLRQHSCLSD---------ELERRALLNL 386 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 +E + E +D++ L+ + ++ E + I L+ L IL G Sbjct: 387 KTTLEDCWDL-LEQPEALDMLMALLAQKKLEISEEVDGRIAITD-LKHPLPARPLTILFG 444 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKT-AEKYIGQAAHDFEMANGTRH-LIYTRSLREN 706 ++ +P N A ++ + A++Y + H LIY+ + Sbjct: 445 ADQNSFPGNIAYAGIFDEDYLKTTSMPSQADRYDHYTKQLEWIYTSASHCLIYSYAAGNY 504 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + + + R + ++ + Sbjct: 505 EGKSWDVAF----------EIEQRAASRAVLWPLIQNEVYSDQRHQLTPETARRLFTPDH 554 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S S + PYA + + L+L + GT+ H ++ + I+ Sbjct: 555 VLRGSISSFETYFQCPYAYFLKSGLRLS--KGSLTTVNAAIVGTIQHALLEQSIQTWGKD 612 Query: 827 NTPEINHLMKQIIDSHFEK-ENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-----SIEK 880 M I+ +F++ +L P + ++ + + E + + S Sbjct: 613 YAKLNETEMTAILSPYFQQLHDLFPDQQAEIDQIQRRMQLNLTQLLEALAAMEENTSFAP 672 Query: 881 IFVNIPAK---MAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQ 936 + + + I + L G DRID G + I DYK+ + + + Q Sbjct: 673 AYQEYRFEEDLLETGGITVRLKGIIDRID-TCLGDLRILDYKSSAKTLSESKVKAGLQLQ 731 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCITNDKKKYSADELSEKSLKNL 994 L A +Y LK + + N ++ D + + L Sbjct: 732 LLTYLIIAVRKL-----RLNPAGAYYCSLKNETISVSEASLNGRRMEIEDVERDAWMSEL 786 Query: 995 IE 996 Sbjct: 787 QS 788 >gi|325136636|gb|EGC59236.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M0579] gi|325201628|gb|ADY97082.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M01-240149] gi|325208637|gb|ADZ04089.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis NZ-05/33] Length = 1069 Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 107/885 (12%), Positives = 231/885 (26%), Gaps = 69/885 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N D+ K NI + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L + + + + L++ + L A V Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ ++ Q +++ Y + RT Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + + Q P + + + + + +D + + N + +++++ + P Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + E + F + +I++ Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850 >gi|119357211|ref|YP_911855.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium phaeobacteroides DSM 266] gi|119354560|gb|ABL65431.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium phaeobacteroides DSM 266] Length = 1077 Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 109/954 (11%), Positives = 242/954 (25%), Gaps = 111/954 (11%) Query: 19 REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78 ++ AL P + I V ++ + + E G + Sbjct: 12 ETLVDALAE-------VLGRNPPSVFEYEKIVVQSRGMQRWISMELARRFGVWAGAE--- 61 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + + ++ ++ L+ + S + RL+ ++ S L Sbjct: 62 YPFPNRLLQQLFEEMELTQPDSSTFSKEVMCWSMMRLLPEMLDRELFSPL----RSYLRN 117 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L+ +AD D + W + W Sbjct: 118 DRDGLKLFQLSGRIADTFDQYTLFRTDLLAAWEEGRDDGARDWQP---------ELWRAL 168 Query: 199 LVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + E + + ++ L G I + G + P ++ +A I Sbjct: 169 VAESSGKHRGRLKTEFCLKVRHASLPAGFPKRISLFGISYMPPYHIGMIEALATRIPVNI 228 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 L + I + + + +P LA L + + G + Sbjct: 229 FLLSPTQEYWSDIVSRRKLFRMSEGERELSTEGNPL--LASLGRSGREFADLLLEAGGIE 286 Query: 318 NEMYGRSMVISKSFLPPDTSD---MRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 NE + L SD + T + P ++ V + N E + Sbjct: 287 NEHDLYIEPADDTLLHALQSDMLNLSGTGEEGERRPAPERADRSVQVHSCHNPLREVEVL 346 Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L+ ++ ++T + + + I+ L Sbjct: 347 HDNLLDLLERLPGLEPREIVVMTPEIETYAPYIATVFGSSGDGVSRLPHSIADRRMLDEG 406 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482 + L LL I L+ P +F E+ L + + +R + Sbjct: 407 GIAPALLKLLELYGSRLPSPDIFDLLSSPPVSRRFRLDEEELDTIRVWVADTRIRWGMDE 466 Query: 483 YDIMDL------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 L + + +P + + + + Sbjct: 467 RSRSGLGLPPFRDNSWRAGLERLLLGYAMPDEGVLFDGVLPFDVEGDAETLGKFADFIDA 526 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + ++ W + L + L +++ K+ E Sbjct: 527 LEALSARFDRPRTLDGWRDHFIWMLDIFIDADEEVEREL------SHIAAEIDKLTELAG 580 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGV 653 ++ + G K ++ + L R + F + + G+N+G Sbjct: 581 EASFGGETAAPVMIAWLRGRLEKFEMGLGFMTGGITFCAMLPMRSIPFRVVAMIGMNDGA 640 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPT 710 +P+ F + ++ E R + + + +N Sbjct: 641 FPRQQRLPGFDMMSREPRKGDRSVRGDDRY--LFLESILSARDVLYLSYVGQSIRDNSEQ 698 Query: 711 IASRWLQRLLVLG--------GTDFFDNLKKR---------------------GQCYLDW 741 S + LL G D + R + Sbjct: 699 PPSVLVSELLDAIERGFAFSEGEDAISRMVVRHKLQGFNPAYFTERSPLFSYSDDNFRAL 758 Query: 742 TRKLDYTT------KQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + + P RP +P P + R + ++ + +P A + R L Sbjct: 759 ACRDERNAGNGSRGRNPVEARPFMDEPLPEADDGDRRVTIDDLVKFFANPSAFFLDRQLG 818 Query: 793 LDF---IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 L + ++ G + + EL+ + E + + S P Sbjct: 819 LKPSAALRPLEEREPFGAEGLDAYMMRQELLAAVLEGGKEEA---LLPLFRS--RGLLPP 873 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + F + +++ S + ++ G LTG D Sbjct: 874 ARHGELLFGELLAEVREFADRLPELKGSAAPAVLEAD----LDIGGFRLTGRLD 923 >gi|161507625|ref|YP_001577579.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DPC 4571] gi|251764593|sp|A8YVK1|ADDB_LACH4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|160348614|gb|ABX27288.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DPC 4571] Length = 1160 Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 109/902 (12%), Positives = 244/902 (27%), Gaps = 154/902 (17%) Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 DL + L+I + E + S+ Q+ L A++ Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 + + + + + + Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240 Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + Q ++ +L+ FL + D V S+ +P + + + Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401 L + + V L++AD+ EA +A + + + + ++ D Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345 Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455 L + I + + L +L + ++ ++K L Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLAILKTHLLIP 405 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + E + LE L N K A + +++ Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVAKID-- 461 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569 L LVD + T L K ++ + ++ + N + Sbjct: 462 --RLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + P ++ + L + E K + E+ +++ T + Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681 + + + + + G G P K FL+ + L L+ ++ Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634 Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736 + +A + + + +N S + QRL G + +L ++ Q Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694 Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770 L L T K K + + Sbjct: 695 ELLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754 Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 S S+++ + Y + LKL + + D G FH Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812 Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861 L+K+ + + + ++ +I D + + + H Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908 K++ ++ + + + + + + + I + ++L G DR+DL Sbjct: 873 KVAQNWRKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930 Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960 K + + DYK+ I Q+ L + F++ D + Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNRFFAEEDKLSLLGA 990 Query: 961 FY 962 FY Sbjct: 991 FY 992 >gi|302521801|ref|ZP_07274143.1| ATP dependent DNA helicase [Streptomyces sp. SPB78] gi|302430696|gb|EFL02512.1| ATP dependent DNA helicase [Streptomyces sp. SPB78] Length = 439 Score = 124 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 108/401 (26%), Gaps = 56/401 (13%) Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL---KTAEKYIGQAAHD 687 + ++ L + +++ G+ EGVWP + L L T + + Sbjct: 1 MTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPGALLAEERRL 60 Query: 688 FEMA--NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 F +A L+ T SR+L L V +R +L Sbjct: 61 FYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGV--EPRHLTVRPRRPLAVPALVAEL 118 Query: 746 DYTTKQPHYKRPK-----------------------PFPPLEAQPRTYSFSEIKQLINDP 782 TT PH P + + + DP Sbjct: 119 RATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVNEVPVRDP 178 Query: 783 YAVYARRILKL--------------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 A L + G + H ++ + + + Sbjct: 179 AQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVH-VLADEVATGRSPAD 237 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ + + FL ++ + P Sbjct: 238 LDVLMERLDTVWDGLAFDAPWKSAQERENAR--AALERFLRWHVLDRTGRTPVASEHPFD 295 Query: 889 MAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALK 945 + + + I + G DR+D +G + D+KTG P + PQL++ A+ Sbjct: 296 VTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEVDHH--PQLAVYQRAVA 353 Query: 946 AGSFSQIDCRKVANLFYIRLK-QKFKIDCITNDKKKYSADE 985 G+ + + L+ + K D ++ + E Sbjct: 354 EGA---VGPLTPGGAELVHLRLEASKKDPLSPKVQPQEFPE 391 >gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 1086 Score = 124 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 88/837 (10%), Positives = 192/837 (22%), Gaps = 124/837 (14%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPAT 242 L + + E + + +++ + Sbjct: 235 LVDLAVRFQEEKTRRGLVEYSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQ 294 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 RL+ST+ G V+ D H W + + ++ + Sbjct: 295 TRLLSTLFG---GTPVMAVGDPHQSIYGWRGASAANLARFGADFAPAG------------ 339 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + +S + V+ + + + + P + + Sbjct: 340 ---ASAADVPVYALSTSWRNPASVLGAANRIVEPLTAASRIPVARLEPRPDAGDGHLDVA 396 Query: 363 EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417 + +EA S+A L + + +A++ L G+ + Sbjct: 397 YEETIADEAASVAAWFADLLRQTGSDGRPRSAAMLCRSLKTIEPFTTALADRGVPFRVLG 456 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L L +L + + L+ A++ K + + R Sbjct: 457 LGGLLDQPAVVDLVCVLRVLHDPTAGSELVRLLTG--ARWRIGTKDVHALSRVASWLMSR 514 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + +++ + R + + ++ L + + L Sbjct: 515 DHAQKPLAEEVRDGL--RASVVPDEVGSVVDALDFVVGARDGHTALAGFSDEGLARLRAA 572 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + +TV + + E + G Sbjct: 573 GRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLGRASLEAFTEQVAGYLQGDS 632 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPK 656 + E + IL S+ L +D + + + EG P Sbjct: 633 AGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPG 692 Query: 657 NTAKNPFL------------------------------SRVMQSDLNLKTAEKYIGQAAH 686 + + E+ + Sbjct: 693 TLREKKGWVAFGALPFEFRGDSAELPSLAWRGVETQKEFAEAMEAFGEELEERNAAEQRR 752 Query: 687 DFEMANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 +A S P +L+ + +G + Sbjct: 753 LAYVAITRTRSDLLLSGSFWSTQQKPRGPGAFLREIQQVGLIAPDALPEAPELEENPLEP 812 Query: 744 KLDYTTKQPHYKRP-------------------------------------KPFPPLEAQ 766 P L Sbjct: 813 GSARVAWPLPPLGPREARVRAAAGAVAGADPDAETVWTRDIDLLLAERDARARDAELVDL 872 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P S K ++DP V AR + P+ + GTLFH + Sbjct: 873 PTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRL-----GTLFHGWVEARYGPAGTS 927 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + +ID+ + + P + + ++ F E + + V + Sbjct: 928 D----------VIDASGVELDADPTEPPVEQEDLDRLRAIFEASEWASR---KPEEVEVE 974 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 M + + D + L+ G + D+KTG PK +L QL+L A Sbjct: 975 IHMELAGQ--VVICKIDAVFLI-DGRYRVVDWKTGRTPKDAADLELKQLQLALYRLA 1028 >gi|325972064|ref|YP_004248255.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy] gi|324027302|gb|ADY14061.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy] Length = 871 Score = 124 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 98/783 (12%), Positives = 199/783 (25%), Gaps = 110/783 (14%) Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + + IS + + + L Sbjct: 147 RSLFEPRYAQPCLPPDWDASVRYCILFCDTISSAQQLFTSLGCPSWLELRPTPCAKLA-- 204 Query: 357 SDVALIEADNEREEAISIAIALRMSL--DENKKKSALITADRNLARRVKLELTR-FGINI 413 L N E + +R L + A NL + E + I + Sbjct: 205 ---TLEVFGNHVMEIRTTLRRIRKLLSSKTPAHSIVIGCAASNLLLPILQEEAVLYDIPL 261 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 I G L + ++ +L+ P + + + + A++ Sbjct: 262 VIREGKLALEYPSGRFLNRIQEVYDDQFSLESLKSLLLDPGIPYKDRDLHHRFLRRAVDK 321 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + G+ D + + QS + +L + Sbjct: 322 SIVHGSLKQKD-----QFTEMLADRDLRSWYRSLKQSIIDIVTASDIEMLRRKLNHF--- 373 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + W + + + + + Sbjct: 374 ----------QDTYFTAEQWV------------GTEDEDVYSFCLDAIDHIKQAMQRC-- 409 Query: 594 TGSCIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + + + + L+ + ++ + + + L D L + GL++ Sbjct: 410 -------SIASYPHVFSYLLSYLQTKLYVPQQRKGGIAVYAWPQVAPLIADHLFVLGLDQ 462 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 FL + + + A ++ G ++ + R + Sbjct: 463 ESSATIERPLLFLPSQIGEEHRKEIDTTRANLQA----VSLGDGNVTLSCHTRRYEGELL 518 Query: 712 A-SRWLQRLLVL------------------------GGTDFFDNLKKRGQCYLDWTRKLD 746 S +L+ +L G ++R T L+ Sbjct: 519 PPSAFLEEDALLYHGQSPNLCEDPYLEELALYKQGPSGPAISLESQRRFFLTARKTALLE 578 Query: 747 YTTKQPHYKRPKPFPPLEAQPR------TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y P + R S ++I PYA A + + + Sbjct: 579 RRDDYTRYPIPLDLVKKLKEERDGKALLVLSPTKIDLFDRCPYAWLAHYLYGVTKETYDV 638 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHID 853 + D G L H + + ++ + + L + + E P I Sbjct: 639 ERVDHLMIGNLLHLVYQRFFSQIVDFDPALLEQYRSLLTSLFDSTLTDVYGSEGPTPSIR 698 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKS 910 + + LE E K+ S I + + + L G DRI D + Sbjct: 699 SWIIAEYRQKVLCILEQEAKLFSHTRSILFEQELSFSYD--SLFLHGRIDRIINLDPPEG 756 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 + DYK G+ P K +KL QL L A +K ++ Y +K+ Sbjct: 757 KSYAVIDYKKGEAPMKSIKEKLSSYQLPLYRALVKHAL-----GGAASHAAYYSVKEGRY 811 Query: 971 ID--CITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 ++ DEL L+ + L Q S++ +Y L Sbjct: 812 RSLWTDDGSEEALLGDEL-------LVNRLDSLGESVQVGAFMATPSKQHCSGCDYRSLC 864 Query: 1029 RVA 1031 R Sbjct: 865 RRR 867 >gi|160914773|ref|ZP_02076987.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991] gi|158433313|gb|EDP11602.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991] Length = 889 Score = 124 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 89/662 (13%), Positives = 194/662 (29%), Gaps = 77/662 (11%) Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVK 403 K+ + K ++A A N+R+E + A + + + + D + + ++ Sbjct: 170 QQGAKLSSFPKEEQEIAFYHAVNKRQEIEACAQHILN-HSLDAQDIHITLCDASYPKLIE 228 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 R+ I + S +LLN +F + + L + Sbjct: 229 QIFQRYHIPYTLFQQETSSQLP--KQFLALLNYVFDPCK-EQLLACLDSELF--TGGNIH 283 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 R L V DL + + + + + +E + A Sbjct: 284 ALREYMQLFEV------------DLFDNFHHLETMEDSGNLMNIYTLKQLQELENKAAEA 331 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 +L T L N ++ + + ++ + + Sbjct: 332 QAELLPFFTQLNQNMQITNK-----------------VELIVNELNKHIHTDEDRSIYRK 374 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 ++++ +I + + + K + I + L Sbjct: 375 ITTILYEI-----GDVVQTKNDLHFLASFFENIQGSKKQPSYQGVLIHNHKQEVLPRKYH 429 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM----ANGTRHLIY 699 +LG T K F + E+ + AH E +++LI Sbjct: 430 YVLGATQTNYPAFQTKKGIFDEAYYALIKGYPSMEE---RYAHYMEQMNQILTHSKYLIL 486 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + + ++ + + Q Y + + Sbjct: 487 SYPVGSYEGKSM----------EAALEIEQYAQTPSQPYPLHENYAELRLQDTLSADMAK 536 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 L+ S S ++ + P++ + R L L F+ GTLFH I+ L Sbjct: 537 QLFLKNGCLHGSISSFERYVKCPFSYFLRYGLSLK--EPFQPGFPDAYAGTLFHYILESL 594 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENL-PPHIDIIWRHLFHKIS---HSFLE--HEEK 873 + + + + +++I+D P +++ ++ ++ LE E + Sbjct: 595 TNAYGKEYSEQSSKQLRKIVDKELAHLTQIFPSMELALMNVKERLLISMTQTLEVLQEFE 654 Query: 874 IQSSIEKIFVNIPAKMAIESIG---IHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETA 929 S + + I L GF DR+D + F I DYK+ + Sbjct: 655 THSQFSPTASELEFHYDLPLQENVTIALHGFIDRLDTYQD-FACILDYKSSIKTLSETDI 713 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK--FKIDCITNDKKKYSADELS 987 + QL A + +++ +YI LK + KK + +E Sbjct: 714 FAALQLQLLTYAMVVHQQ-----QQKEIMGAYYISLKNETIPCPAGKLTRKKPVTYNEYV 768 Query: 988 EK 989 ++ Sbjct: 769 KE 770 >gi|325134747|gb|EGC57384.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M13399] Length = 1069 Score = 124 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 105/902 (11%), Positives = 221/902 (24%), Gaps = 90/902 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVNTGDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L + + + + L++ + L A V Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLALLETAPVLRRFGLTEDDLPLLHDMVADLNVHWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLTDIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753 S L L+ ++ Q +++ Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756 Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + P+P P E + +P V+ ++ L + Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAE 816 Query: 807 DR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 I I+ R + +I + +W+ F + Sbjct: 817 PFEPQHADQIAEIYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAAK 871 Query: 866 SF 867 Sbjct: 872 QI 873 >gi|260101293|ref|ZP_05751530.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DSM 20075] gi|260084878|gb|EEW68998.1| ATP-dependent exonuclease subunit B [Lactobacillus helveticus DSM 20075] Length = 1160 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 110/902 (12%), Positives = 244/902 (27%), Gaps = 154/902 (17%) Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 DL + L+I + E + S+ Q+ L A++ Sbjct: 138 DLDNIDETNLDQETKSKIHDLRIIYDAFIEEIAGK-FSTKNEVQVQLNDILAKNSE-LKN 195 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 + + + + + + Sbjct: 196 ASFYFCDFSHFSLQEMLTIQILMRKAKNVTL---------------AFKTRLGNINPKAE 240 Query: 288 YSTH---PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + Q ++ +L+ FL + D V S+ +P + + + Sbjct: 241 AGDYDYVIQQTIRRLVSFLQERDMDY---------------VASEFPIPSEPTPREILNS 285 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITADRNLARR 401 L + + V L++AD+ EA +A + + + + ++ D Sbjct: 286 LWTETVSKVDELKQVQLVKADSRYAEAYFVARTIYQQVALNNYRYRDFLILAPDLKEYET 345 Query: 402 VKL-ELTRFGINIDISAGIPLSTTLHSSI---LTSLLNAIFKLNDFMAIATLVKHPLA-- 455 L + I + + L +L + ++ T++K L Sbjct: 346 YLTPILRQNNIPFFNDLQQEMKYHPLVVLIENLFNLRDLKENPFQTQSMLTILKTHLLIP 405 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + E + LE L N K A + +++ Sbjct: 406 SWYKEEAEYIHDVDELENFVLAHGINHNLWK--KHFADFVSAEVIRLDKIDEEVAKID-- 461 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI------SDWTKLTVTCLQNVCLDEH 569 L LVD + T L K ++ + ++ + N + Sbjct: 462 --RLRGYLVDKVTNLFTKLEQEKDSQKALTIFFDFLTKNGIAERLEQWRDAANNAGDLQQ 519 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + P ++ + L + E K + E+ +++ T + Sbjct: 520 AQQPEQLWDLLIQLLKDYLAINPE-----KFDLDEFFNMLISAFKEATFSQIPSTLDAVN 574 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681 + + + + + G G P K FL+ + L L+ ++ Sbjct: 575 LSEMGMVQTSGYKQVFIIGATSGNLPSIEKKPGFLTTENLNQLQSSFESDAYLEDNQRLN 634 Query: 682 GQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQ 736 + +A + + + +N S + QRL G + +L ++ Q Sbjct: 635 NLDQNYQFGLSLALAQDRVYISYPVLNASNEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQ 694 Query: 737 CYL-----------------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--- 770 L L T K K + + Sbjct: 695 DLLSFITNPDASLGYLAYINSNTSDEAIDELLKITQKYLPQKVKAVLDASDFDNQPEDIG 754 Query: 771 --------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 S S+++ + Y + LKL + + D G FH Sbjct: 755 EDLAAELYGKNLYSSVSQLETFYENSYEYFLTYGLKLRRR--LENEFDVIQAGNYFHETF 812 Query: 817 TELIKKRINK----------NTPEINHLMKQII-DSHFEKENLPPHIDIIWRHLFH---- 861 L+K+ + + + ++ +I D + + + H Sbjct: 813 DRLVKRLNEQHIDLADLSSVELEQQLNQVRDVIKDESKYAQLMNDPFNQYLFHCLDHTTS 872 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG----IHLTGFADRIDLL 908 K++ ++ + + + + + + + I + ++L G DR+DL Sbjct: 873 KVAQNWRKSLAE--TPLRAKYSELSFGLDQKIKGISLDIPDLPGNHQVNLRGKIDRVDLA 930 Query: 909 ----KSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANL 960 K + + DYK+ I Q+ L + F+ D + Sbjct: 931 NFAEKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMISYLDVLTNNNCFFAGEDKLSLLGA 990 Query: 961 FY 962 FY Sbjct: 991 FY 992 >gi|240128645|ref|ZP_04741306.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035] gi|268687035|ref|ZP_06153897.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035] gi|268627319|gb|EEZ59719.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-93-1035] Length = 1069 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 101/875 (11%), Positives = 209/875 (23%), Gaps = 80/875 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDRSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E +++ + + I I R +D E+ Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832 E + +P V+ ++ L + I I+ R + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|223041677|ref|ZP_03611874.1| exodeoxyribonuclease V gamma chain [Actinobacillus minor 202] gi|223017541|gb|EEF15955.1| exodeoxyribonuclease V gamma chain [Actinobacillus minor 202] Length = 1085 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 77/759 (10%), Positives = 180/759 (23%), Gaps = 76/759 (10%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + L++ V DP P TI V + Q L+ + E G Sbjct: 10 LTALAEMLIHHQKVNPNE-DPFQPE-----TILVQSVGMAQWLQMQIAESMGVA------ 57 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDL 130 G+ T+ L Y L P + + E L R+I + + L Sbjct: 58 ----GNYEFPFPTSFLWQQYRLLFPHLPKENIFERGVMAWRLMRIIPAVLER--PEFQGL 111 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKYGM- 179 LA +AD+ D W E + ++ + + Sbjct: 112 RAYLTHDKEQDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQIQPFSTN 171 Query: 180 ---------WWLLAA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTK 227 W ++ K + E L + + + E K Sbjct: 172 LQTGIQENVHWQSLLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFEKLEDLTEEEYKKLP 231 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSSN 285 I + G + + ++ + + + + + + S Sbjct: 232 KRIFVFGISSLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENAALEKMALKQQLSE 291 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 T +LL + D + + + Sbjct: 292 TEIQQLLAQQGNQLLSMWGKQGRDFFDQLAEYSPEPIELFFENDQESNLSRLKQAILNND 351 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARR 401 + + + + + + E + L ++N ++ AD Sbjct: 352 NPSYLEL-ENDNSIQIHNCHSAMREVEVLQNQLLRLFEQNPHLSPKDIIVMAADIEQYAP 410 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK--- 451 + I IS S +L A+ L++ Sbjct: 411 YINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFLVMLKLRDSTFSAEALLDLLEVEA 470 Query: 452 --HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 L + + + + S + Sbjct: 471 IGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQNYNSWENGLDRLLLGSCLKEENG 530 Query: 510 SRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + + L + + + + + + IS W + ++ V + Sbjct: 531 IWQNTIAFNESYGLSAERVGKLAEFIEKLTAWSVLSLESHPISTWKQALEDLVKAVYQEN 590 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 L+ + + L +L + +++ + ++ ++ + Sbjct: 591 DASNDALFLIQ--QELEALEALVLQAKFDEPVAFEVIERALQDRLNSQSHVMHFMTG-KV 647 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 L R + F + L G+NE +P+ N F + + Sbjct: 648 NFCTLLPMRAIPFKVVCLLGMNEADFPRQPVINSFDLMQYHPRKGDRARREDDRY--LFL 705 Query: 689 EMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGG 724 E + + + + S + + + Sbjct: 706 EALLSAEEVFYISYVGKSLVKDEEREPSVLVSQFVDYLA 744 >gi|315636565|ref|ZP_07891801.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479214|gb|EFU69911.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 522 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 136/377 (36%), Gaps = 40/377 (10%) Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 S + +LG LE+R ++FDT+I+ NE PK + K+ FLS ++ NL T Sbjct: 154 SGKITVLGLLETRAVSFDTVIVCDFNESYIPKISVKDKFLSTRLKQLANLPTQFDRESLQ 213 Query: 685 AHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + ++ + +++ + E N SR+ L ++ + Y + Sbjct: 214 KYYYKRLISSSKNVFISYVNSETN---QISRFANELFEKNIATDTNDSFYKHILYDNHKI 270 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + +S + K + Y + ILK++ P Sbjct: 271 SYFDEDIISKI---------DLTKFIWSATSFKNFLECKRRFYLQYILKINEH-TISLKP 320 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + G + H+I+ + K + I+ F K + ++ K Sbjct: 321 KGYELGDIIHSILEDYYSKDNKNS-----------IEELFLKYKSSNPFLTLDLEVWKKK 369 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 +F E +++ + E I + + I++ G DR+D + ++ DYKT Sbjct: 370 LLNFYEFDKQRLKNREIIMIEKEFNCSFN--NINIKGIIDRVDKFEDN-YEVIDYKTSST 426 Query: 924 PKK---ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 +T +K +D QL AL+ F + + FY L + + I +K Sbjct: 427 LSVDTLKTYEKSVDFQLEFYHIALQQ-LFKNSNIK----AFYYDLNECLLKEEIAIQEKL 481 Query: 981 YSADELSEKSLKNLIEI 997 EL L E+ Sbjct: 482 ----ELLSSKFDELKEL 494 >gi|312869864|ref|ZP_07730004.1| putative ATP-dependent nuclease subunit B [Lactobacillus oris PB013-T2-3] gi|311094604|gb|EFQ52908.1| putative ATP-dependent nuclease subunit B [Lactobacillus oris PB013-T2-3] Length = 1250 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 128/1081 (11%), Positives = 247/1081 (22%), Gaps = 198/1081 (18%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + SL + L P +S I + +A+++ L Sbjct: 74 QVLSLSRLAWYLLRDTPALQR---PRLSKIGLTMLVAKVVQDHAADL------------- 117 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-------WLLAADFLK 189 L S A + L D + + DL AL + WL ++ Sbjct: 118 QLFASEAQQPGFIQKLTDQLTELANANVSAADLTALLRQAQHDDNASINQAWLAKMHDVE 177 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + ER+ + + + I P +++ + Sbjct: 178 LIYHAYEERV--QGKFMGNTELYQQLAQFLQSQPAAKRMHFFIDRFAQFTPGEQQVVDAM 235 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + V LD P +E + +L DF ++ Sbjct: 236 ILNGASTTVSFVLDRGYPDQTHPDQSELPGSTDLFYPAAM-----QYHRLWDFARQHPQE 290 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + NV R + L+ N +D+ I N R Sbjct: 291 VDLVPNVLVATKDRVSPTLTAVDHFF--ADYIKKPLDLTAGNEVVDPADLQFITTVNRRT 348 Query: 370 EAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTL 425 E +A + + + +++ + + + I + + Sbjct: 349 ELERVATMIHQLVATKGYRYRDFLVLSRHLDKYQTLLAPTFAAHQIPVFNDHERRMDNHP 408 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVK---------------------------------- 451 ++LT+L N I L+K Sbjct: 409 LVTLLTALFNLPLYHYRTADIMQLLKTWLLAEYQPATGDYQALDQDAVFTTENWCLKRAV 468 Query: 452 ----------HPLAKFGFPEK-----------YLSRAKNALELVALRGNKNSYDIMDLKS 490 PL + G + + K +L + Sbjct: 469 EGQRVWTDAESPLWQVGDSTAAPVNQLQEQLSRVRAFVADRIMSFFADLKTVTTGRELAA 528 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS- 549 + + + WQ S D +LA L Y T N Sbjct: 529 KTYQFLVDNRVVKRLTDWQKYQSTRDLDLARQPQQVWGTFCQILDEYVQLLGDTPVNADN 588 Query: 550 -------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 S+ + Q + + + +I + + Sbjct: 589 FTATLTNFSELLQAGFAAAQYSQIPATLDQVMVSETGIVQNQDRKIVFMIGSTDDVMPEV 648 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + ++T + L + R F L+ T K Sbjct: 649 QQQESLLTDQDKELLANYLDPATQYLPAGPRDQLRTEPF-------LHYSGMMTGTEKLI 701 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLL 720 L+ D T Y+ A F+ L+ + + R + + L +L+ Sbjct: 702 MLAPTASDDDQPLTPSAYLTDMARYFDQPVAAVPLVASPAGQQRVPDYVSTPVATLSQLV 761 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------- 770 + D K W + + R P + R Sbjct: 762 QVERQARNDQPKGPIVLAPGWQAVRQALVDEIAHLRHAPRAADQRAGRELAARLSLITAG 821 Query: 771 -------------------------------SFSEIKQLINDPYAVYARRILKLDFIPHF 799 S S+++ +PY + + L L Sbjct: 822 FNYRNQVDDLGEQLAAALYLRHNHDQQILYSSISQLQDYYVNPYEYFLKYGLGLKKRDQL 881 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKENLP---- 849 D GT FH + + E + +I Sbjct: 882 TMSVD--RIGTFFHKAMEWFVSAVNADQQLSFAGLAENPAQLNDLIKRALAVAKDDQPDL 939 Query: 850 ---------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------ 888 + + L + K + + + I Sbjct: 940 AILTASSNQAAFQYQQLTRIVRTMLTILCWQAKYTA-AQPLDTEIRFGRLGAAKEDDLRP 998 Query: 889 MAIESIG----IHLTGFADRIDLL-KSGF--VDITDYKTG-DNPKKETAQKLIDPQLSLE 940 + ++L G DRID L + + + DYK+G A + QL Sbjct: 999 LEYPLRPANTHVYLRGRIDRIDQLNQDNKDYLTVVDYKSGNRIFDLTAAYYGLSLQLLAY 1058 Query: 941 AAALKAG-------SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 A+ + ++A Y+ L + + K Sbjct: 1059 LNAISSNRHQLPARLNPTAGDLQLAGALYLHLSNPVINAAKLKPGTDLDTVRMQQHQYKG 1118 Query: 994 L 994 L Sbjct: 1119 L 1119 >gi|118594718|ref|ZP_01552065.1| Inactivated superfamily I helicase-like protein [Methylophilales bacterium HTCC2181] gi|118440496|gb|EAV47123.1| Inactivated superfamily I helicase-like protein [Methylophilales bacterium HTCC2181] Length = 880 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 71/505 (14%), Positives = 151/505 (29%), Gaps = 38/505 (7%) Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +L + +W + E L + +SL ++ Sbjct: 381 SLRLREWVYQIEALWNEIKFSEINFLLSFEINNLNSLYASLHQLKNNEVVDGLIEFKTFL 440 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ ++ PK + S + I G E+ + +D + L +N+ WP N L Sbjct: 441 KLLFIHLESW-PAPKKDGQSLIDIKGFYENPIKEYDAIWLMNMNDNHWPGKLMFNSLLPM 499 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 +Q ++ E Y + +L + S + + + + Sbjct: 500 KLQKKYHIFDEEYYKQINTVHQDRLKKFGPNLTISFSQTDEDGNPLFCSN-NYFSDIKEG 558 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + D LD + + + + ++ P Sbjct: 559 LITKKRIEGKKSLNDVDFILDNYAPEV----------TGEKKISRGTACLENFQKCPAWA 608 Query: 786 YARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK------NTPEINHLMKQI 838 + L ++ RGT+ H ++ +K N + +I + + QI Sbjct: 609 FYENRLGAFKSQEDEVEELSPMARGTIAHELLEAFWRKYKNSEVLKSMSDEQIKNNITQI 668 Query: 839 IDSHFEKENLPPHIDIIWRHLFH-----KISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 I+ + ++ ++ ++L +E+ + + I Sbjct: 669 IEGKLKTLEASLPFLSPFQIKVQSNYFNRLLFNWLSYEKNHRGIFKVSSTEKAFTANIGR 728 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--IDPQLSLEAAALKAGSFSQ 951 + L DR+D G + + DYKTG + + QL L AA + + S Sbjct: 729 LSFKL--KIDRVDEYTDGSMIVIDYKTGSTTPNLSDYQGTIKSLQLPLYAAYSEIKNLSA 786 Query: 952 IDCRKVA---NLFYIRLKQKFKIDC--ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 I KV+ Y L ++ KK S + L + + + G+ Sbjct: 787 IGIAKVSINDQKIY-GLTSHIQLPPDGDLVLSKKISWEHLIPSWQEQIFNAASGFLKGDA 845 Query: 1007 PFISHLRLSEKSNIQSEYDHLARVA 1031 S +K + R+ Sbjct: 846 ---SITFTDQKDLDYCSVKSILRLG 867 >gi|315586350|gb|ADU40731.1| conserved hypothetical protein [Helicobacter pylori 35A] Length = 778 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%) Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + + + + + + + ++ TLE+R + FD +++ NE P Sbjct: 378 SLKDLLHLYLQEFEA-NFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDC 436 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENNIPTIASRWLQRL 719 + FL+ ++ LNL T H + ++ ++ + E + S L L Sbjct: 437 DLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEMVLSYIESETSKV---SNMLLEL 493 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + D+ + + Sbjct: 494 DLHIEPIKDAYTLFESTPLKDYQEEEIQAAIPKDFSFSASSLSAFL-------------- 539 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 Y R I + P + + G+L H ++ E + +KN + + Q++ Sbjct: 540 TCKRRFYYRYIKRFKESPKDE---SNSAIGSLLHELLKEAYE--KDKNLYALEERLIQLL 594 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKIFVNIPAKMAIESIGIHL 898 + K N+ P + KI +F E++ + I+ + + + I+ G+ Sbjct: 595 E---TKGNITPKERLDTLIALKKI-QAFYVKEKERFHAKIKILDLEKSFETTIQ--GVAF 648 Query: 899 TGFADRIDLLKSGFVDITDYK--------------TGDNPKKETAQKLIDPQLSLEAAAL 944 G DRID + + DYK G E AQ D Q+++ A AL Sbjct: 649 KGHIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISTDYQMAIYAFAL 708 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 K + F+ L++ ++ Sbjct: 709 KNLGYKG-----PIKAFFYDLRKGKLLEE 732 >gi|254673959|emb|CBA09743.1| exodeoxyribonuclease V gamma chain [Neisseria meningitidis alpha275] Length = 1069 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 106/901 (11%), Positives = 226/901 (25%), Gaps = 88/901 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L+ L + + + + L++ + L A V Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLETLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPH 753 S L L+ N ++ Q +++ Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756 Query: 754 YKRPKPFPPL-------EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 + P+P P E + +P V+ ++ L H + + Sbjct: 757 GQTPEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPA 815 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 + H I + + + +I + +W+ F + Sbjct: 816 EPFEPQHAEQIAEIYIEARREGQDFSQTAARIGAESL---LPSGELGRLWQQDFQTAAKQ 872 Query: 867 F 867 Sbjct: 873 I 873 >gi|261365222|ref|ZP_05978105.1| exodeoxyribonuclease V, gamma subunit [Neisseria mucosa ATCC 25996] gi|288566304|gb|EFC87864.1| exodeoxyribonuclease V, gamma subunit [Neisseria mucosa ATCC 25996] Length = 1072 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 106/879 (12%), Positives = 231/879 (26%), Gaps = 75/879 (8%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 LA+ I V ++ + L G + + SL + + L+ P Sbjct: 29 ALAAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S L L R + +++ L + LA LADI D Sbjct: 86 FSPEVMRWRLLDLFRSERFQTTSEFENVRSVLQSYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 +W D L L ++ W + W R ++ S + Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + G + P +L+ ++ H + + W + E Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNP----SGQYWGNVIE 247 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + + + + L L D + + + Sbjct: 248 AAQLLKGGDEADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQN 307 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALI 392 E+ ++ V ++ A + E + L L E+ A++ Sbjct: 308 DIQNLRMPSEHSRADLLD-DGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVL 366 Query: 393 TADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 T + + + +S L L+ + + + Sbjct: 367 TPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQPLLYALEQTLDLLESRFEVDKV 426 Query: 447 ATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 L++ L + L A V + D + Sbjct: 427 LPLLESGLVLRRFGLTADDLPLLHDTIAELNVHWGLDGTMRGAADNLFTWQQALERIVLG 486 Query: 503 THVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 +P S L + + +D + + T + +WT+ Sbjct: 487 WMLPDDGSPLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPAAAEEWTERCRDL 546 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +Q++ L + L ++ + L+ + G I I R + E+ Sbjct: 547 VQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES--Q 602 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + R L F + L GLN+G +P+NT F + Sbjct: 603 AGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARRDD 662 Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 E R L + R N+ S + L+ G+ Sbjct: 663 DRY--LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTVAA-------MTGRR 713 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + + P + + + + +N P R + F Sbjct: 714 SKELAEQWVEQHPLQPFSHRYFIPDNISDDLFSTRQDYAEALNRP-----REQARPFFSE 768 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 +++ + + I N + + ++ + Sbjct: 769 ALEENSPAPNV------WQDDFILFWKNPVKAWLQQTL---GWREPYRDEAWESAEPFEP 819 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 KI+ ++L+ + Q ++ V + A+ + + + Sbjct: 820 QRADKIAAAYLDARRQNQ-DFQETAVRLDAESLLPAGEL 857 >gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974] gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974] Length = 1070 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 93/905 (10%), Positives = 219/905 (24%), Gaps = 152/905 (16%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 P A+ L ++ + + +L+ A+ L + Sbjct: 186 GRRMAEQLAGPERVTSAAEELERLV-RTLPKGPRQRAEPSLELRDAVAVQQARAELLGMV 244 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLM 246 +K ERL A+ A G +++ + A L+ Sbjct: 245 AKV-QERLRSSGAADFATQTARAAELAARFAQVRAEESGAHRVVLLDEYQDTGHAQRMLL 303 Query: 247 STV--ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + N V D H W + + + Sbjct: 304 RALFGQDGDNDVAVTAVGDPHQAIYAWRGASAGNLAAFGDDFGARDS------------- 350 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 L +++ +++ + + + +V + Sbjct: 351 --------LTLMTSWRNPVAVLGLANRTVAPLRRAGGASAVPELTARPEAPAGEVRVALF 402 Query: 365 DNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 ++ EE IA LR + E ++ A++ A V L G+ + Sbjct: 403 EDAAEERAWIAERLRRAAAEADGTGSRPSMAVLVRRNADALAVADALASAGLEAQVVGLG 462 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T S L ++L + + A ++ P + G + A+ A Sbjct: 463 GLLDTPEVSDLLAMLELVADPSSSTAALQVLTSPRWRIGAADLAALSARAAELGARRPKR 522 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 D +L + +A + + + + + Sbjct: 523 SAPKDSAELIDQLAGVLADEGAEQASLGDALADLGDLARYGPAGGARLAVLAGEVDRLRA 582 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + + + ++ + +K + Sbjct: 583 QLDRP--------LPEFVTLVERTMGFAVEADAQARERLSAFASVVAEHAKGVAATGGST 634 Query: 600 --ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + + ++ + + G V + +L ++ L +D + + L +GV+P Sbjct: 635 SLSGLVGYLRVAETVERGLPVGEVAPDPRKVQVLTVHAAKGLEWDVVAVAHLVKGVFPTG 694 Query: 658 TAKNPF-----------------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 A++ + L +++++ + + Sbjct: 695 RARSTWVGDLTELPPDDLGPLTSSQDRAELQEMLRAEREAAKEVADEEERRLGYVAVTRA 754 Query: 695 RHLIYT---RSLRENNIPTIASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRK 744 + + S +L + L Sbjct: 755 KQTLLLSGHWWAEGVERALGPSAFLVEWRDALAEQGGMPDVWAESPAGEAANPLLGEAEG 814 Query: 745 LDYTTKQPHYKRPKPFP------------------------------------------- 761 + + +RP Sbjct: 815 VLWPADPLLGRRPSVERGADLVRAALAAEASSASFAAADPEDRDAELFAAAEALIAEREA 874 Query: 762 ---PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 A+ + S++ L+ DP R + P + GT FH + Sbjct: 875 AAERAAAERSGLTVSDVVGLVVDPAEFARERARRGPRPPAREAQA-----GTDFHEWVRS 929 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 E+ + ++ FL+ +S Sbjct: 930 WYLSEELLGLDELPGAADD----------GWESAERGHAPRLRQM---FLDSPWAARS-- 974 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 + V P ++ ++ G+ + G D + G + D+KTG ++ QLS Sbjct: 975 -PVAVETPFELNLD--GVLVRGRIDAVFAQPGGGYVVVDWKTGRADPRKARA-----QLS 1026 Query: 939 LEAAA 943 + A Sbjct: 1027 VYRLA 1031 >gi|256851164|ref|ZP_05556553.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 27-2-CHN] gi|260660588|ref|ZP_05861503.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 115-3-CHN] gi|282934630|ref|ZP_06339873.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1] gi|297206029|ref|ZP_06923424.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii JV-V16] gi|256616226|gb|EEU21414.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 27-2-CHN] gi|260548310|gb|EEX24285.1| ATP-dependent nuclease subunit B [Lactobacillus jensenii 115-3-CHN] gi|281301205|gb|EFA93506.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii 208-1] gi|297149155|gb|EFH29453.1| ATP-dependent exonuclease subunit B [Lactobacillus jensenii JV-V16] Length = 1151 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 118/940 (12%), Positives = 251/940 (26%), Gaps = 141/940 (15%) Query: 154 DIIDIIET--EEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWTERLVELNASSPVG 209 +I I E D L + + L I + E Sbjct: 122 GLIKQIYQSINEVSSSDFDLLDAQSHVTDEETKNKLHDLAIIKTAFDE------------ 169 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 A++ T+ I +AGS + + + NG + Sbjct: 170 ---AIVDRFITKQDFLTEMNIFLAGSNRLKDCSFYFVD--FSQFNGTEQVAIELFAQKAK 224 Query: 270 IWNTITEKSTNITSSNTTYSTHP---QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 ++ + Q ++ KL L E Sbjct: 225 QVVLAFATEDGTIKASPEAGDYDYVVQKTIKKLQRRLSFTYEQY---------------- 268 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---D 383 S + T+ R + ++ +V LI+AD+ +EA +A + + Sbjct: 269 --ASPVKDLTAKQRLDHYWTGDLDYDEQNKPNVQLIKADSRYDEAYFVARTIYQQVSLNK 326 Query: 384 ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 + ++ + + L + GI + + SL + + Sbjct: 327 FRYQDFLVLAPNLHEYETYLTPILRQNGIPFFNDLQKEMKYHPLVIFIESLQTFLETGFE 386 Query: 443 FMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 ++ +L+K L F E R + LE AL N Y + + K Sbjct: 387 SASLFSLLKTRLFIPSFYQDEAAFLRDVDELENFALAHGINYYLWNRPLTSFVK----IK 442 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS---DWTKLT 557 ++ E ++L ++ + I + K TK Sbjct: 443 RPIIALDKRNNEVERLEKLRQVVFKELNNFIEQFKKAEEVKAGVKFFFDFLVKIGLTKRL 502 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET-GSCIKANAIEWIDIITRLIDGE 616 + + +D++ + ++ L +L + + + +A +++ I+ Sbjct: 503 ESWRKQ-AVDKNDLQASQEPKQIWDLLLNLLNDFLLINKPEDQFSASDFLRILISGFKEA 561 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672 + + + N+ + + G + P+ + FL+ + + Sbjct: 562 NFAQIPASLDAVSLSEMGMVQAKNYKNVFIIGASSNNLPQISNTPGFLTSENLAQISSAD 621 Query: 673 ---NLKTAEKYIGQAAHDFEMA---NGTRHLIYTRS-LRENNIPTIASRWLQRLLVLGGT 725 L+ ++ A + + + L N S + +L LG Sbjct: 622 GDNALEDRQELANLDQDYQFGACLTLASNWVYISYPFLNTANESIEPSTYYTKLQKLGAR 681 Query: 726 DFFDNLKKRGQC---------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT- 769 + + YL T K P + Sbjct: 682 ELEQADLPKEDASDILSFTTNASASLGYLTSLLPSYQNTLLDLAKNYAPQKYTQLIQGRN 741 Query: 770 ----------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 S S+++ + + L+L + + D Sbjct: 742 FNNQPVNLGQKLAKELYGLKLTSSVSQLETYYQNSLEYFFNYGLRLKPR--AENELDVIQ 799 Query: 808 RGTLFHNIITELIK-------KRINKNTPEINHLMKQ----IIDSHFEKENLPPHIDIIW 856 G FH L+K + ++ + + I ++ L + Sbjct: 800 AGNYFHQTFDYLVKYAQAHQYDLAALSDEQVLAALTEVRNQIHQEGSYEQLLSDPFNQYL 859 Query: 857 RHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPA---------KMAIES-IGIHLTGFAD 903 K + + K + + + + K ++ I L G D Sbjct: 860 FTSLDKTV-NTVAFNWKKRMAQTPFRPAYSELAFGSGNKLAGLKFKLDQTREIDLRGKID 918 Query: 904 RIDLLK-SGFVD--ITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS-FSQIDCRKVA 958 R+DL + + DYK + N I Q+ L + F D + Sbjct: 919 RVDLAPYKNELLGQVIDYKSSSKNFDLALFASGISLQMVSYLDVLAKNASFFGNDSLDLL 978 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 FY + K N + A+ L +K+L + + Sbjct: 979 GAFYQTIT---KQVERLNKPDQLDANLLPKKALAQAKQRL 1015 >gi|189346870|ref|YP_001943399.1| exodeoxyribonuclease V, gamma subunit [Chlorobium limicola DSM 245] gi|189341017|gb|ACD90420.1| exodeoxyribonuclease V, gamma subunit [Chlorobium limicola DSM 245] Length = 1077 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 114/948 (12%), Positives = 247/948 (26%), Gaps = 99/948 (10%) Query: 19 REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78 ++ AL ++ P I V ++ + + E G + Sbjct: 12 ETLVDALAE--VLRRNPPSVFEPEK-----IVVQSRGMQRWISMELARRFGVWAGAE--- 61 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + + ++ ++ L+ + S L RL+ ++ S L Sbjct: 62 YPFPNRLLQQLFEEMELTQPDSEKFSKETMCWTLMRLLPEMLDRELFSPL----RSYLRN 117 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L+ +AD D W + W Sbjct: 118 DREGLKLFQLSGRIADTFDQYTLFRTDLLAAWEEGRNDGARDWQP---------ELWRAL 168 Query: 199 LVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + E + + ++ L I + G + P ++ +A I Sbjct: 169 VAESSGKHRGRLKTEFCLKVRHAPLPAAFPKRISLFGISYMPPYHIGMIEALATRIPVNI 228 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 L + I + + + +P LA L + + G + Sbjct: 229 FLLSPTQEYWSDIVSRRKLFRMSEGERELSTEGNPL--LASLGRSGREFADLLLEAGGIE 286 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---IQKCFSDVALIEADNEREEAISI 374 NE + L SDM N + V + N E + Sbjct: 287 NEHDLYIEPADDTLLHALQSDMLNLSGTGEEGERRSSPDPADRSVQVHSCHNPLREVEVL 346 Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L+ + ++T + + + + I+ L Sbjct: 347 HDNLLDLLEHLPGLEPRDIVVMTPEIEIYAPYIATVFGVSGEGVPRLPHSIADRRMLDEG 406 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482 + L LL I L+ P +F E+ L + + +R + Sbjct: 407 GIAPALLKLLELYGSRLPAPEIFDLLSSPPVSRRFRLDEEELDTIRVWVADTRIRWGMDE 466 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 L L R + + + +E +L + L + Sbjct: 467 RSRSGL-GLPPFRENSWRAGLERLLLGYAMPDEGVLSDGVLPFDVEGDAETLGKLADFID 525 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCIKAN 601 + + D + + + E E +++ ++ E + Sbjct: 526 AVDALSARFDRPRTLDGWRDHFIWMLDTFIDADEEVERELSHIAAEIDRLTELAAEANFG 585 Query: 602 AIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++ + G K ++ + L R + F + + G+N+G +P+ Sbjct: 586 GETAAPVMIAWLRGRLEKFEMGLGFMTGGITFCAMLPMRSIPFRVVAMIGMNDGAFPRQQ 645 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWL 716 F + ++ + + + + L + + +N P S Sbjct: 646 RLPGFDMMSREPRKGDRSV-RGDDRYLFLESILSARDVLYLSYVGQSIRDNTPQPPSVLA 704 Query: 717 QRLLVLG--------GTDFFDNLKKR---------------------GQCYLDWTRKLDY 747 LL G D + R +L R+ + Sbjct: 705 SELLDAIERGFAFPEGEDAISRMVVRHRLQGFSPAYFTEGSPLFSYSADNFLALERRHER 764 Query: 748 TT------KQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF--- 795 + P RP +P P + R + ++ + +P A + R L L Sbjct: 765 NAGNGSRGRNPVEARPFMDEPLPEADDGDRRVTIDDLVKFFANPSAFFLDRQLGLKPSAA 824 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + ++ G + + EL+ + E + + S P + Sbjct: 825 LRPLEEREPFGADGLDAYLMRQELLAAVLEGGKEEA---LLPLFRS--RGLLPPARHGEL 879 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 F + +++ S + ++ G LTG D Sbjct: 880 LFGELLAEVREFADRLPELKGSAAPAVLEAD----LDIGGFRLTGTLD 923 >gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 1183 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 106/883 (12%), Positives = 234/883 (26%), Gaps = 86/883 (9%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 AR + + +S + A A LA+ +A I D L Sbjct: 297 ARRAQFLEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIA--IARAHVA--ASRDRLKL 352 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG---- 228 A + + E + + + + Sbjct: 353 MRMYGATH--AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLD 410 Query: 229 ----PIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITE 276 I++ + + P ++ ++A P + D + Sbjct: 411 RGIDHILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARP 470 Query: 277 KSTNITSSNTTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + S T S D L+ K N V Sbjct: 471 ERFSEESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFKTPENARGLSALGEPV 530 Query: 327 ISKSFL--PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL------ 378 + +S P D+ E + A E+ A IA ++ Sbjct: 531 VHRSSRIGHPGAVDLWEMIAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGR 590 Query: 379 -------RMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSIL 430 + L E L+ + L R I + + + L++ + L Sbjct: 591 ETIVDKGKERLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDL 650 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY-DIMDLK 489 +L + D +++A ++K PL + + A ++ D +L Sbjct: 651 LALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESFWSHLRSFAADGTELF 710 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 ++R+ + + Q + L T ++ + Sbjct: 711 RAAVERLELFLRQSRSLSVHDFYARVLGSYGGR-----RQFLARLGTEVSDILDEFLTFT 765 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + + + E +++G+ + + ++A + +D Sbjct: 766 LDHESSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-- 821 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 G + L ++ T + + L + + A+ L+ Sbjct: 822 -----GGSKAFTHTHLPKLRLIETRPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEY 876 Query: 670 SDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 L + + T H++ + +L +++ A+ + G Sbjct: 877 RRLLYVAMTRAADRLVVCGYRGVRVNNDTWHMMISTALHDDHPHVEATTFSGSDGEWPGI 936 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + +R +D + + + +P PP PR S S +I++ Sbjct: 937 KWRVPRVERSFERIDR-SQERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGG 995 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 H + ++G L H ++ L + + + + ++ Sbjct: 996 LLVVSPLFGEKEHSDRSL---EKGRLIHRMLQALPEIPLAERPDAASRYAERAAR----- 1047 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFAD 903 P + R L+ E + + + +E ++G D Sbjct: 1048 --FWPEV---ERRKLVDSVLKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRID 1102 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944 R+ +L V I DYKT P QL++ L Sbjct: 1103 RLAVLAD-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREIL 1144 >gi|240949821|ref|ZP_04754150.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus minor NM305] gi|240295738|gb|EER46433.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus minor NM305] Length = 1085 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 79/760 (10%), Positives = 179/760 (23%), Gaps = 78/760 (10%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + L++ V DP P TI V + Q L+ E G Sbjct: 10 LTALAEMLIHHQKVNPNE-DPFQPE-----TILVQSVGMAQWLQMRIAESMGVA------ 57 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDL 130 G+ T+ L Y L P + + E L R+I + L Sbjct: 58 ----GNYEFPFPTSFLWQQYRLLFPHLPKENIFERGVMTWRLMRIIPSVLE--HPEFQGL 111 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKYGM- 179 LA +AD+ D W E + ++++ + Sbjct: 112 RAYLTHDKEQDSLKLYQLATKIADLFDQYLVYRPHWLVHWENGQWQEVVREIQSQPFSAS 171 Query: 180 ---------WWLLAA--DFLKIASKYWTERL--VELNASSPVGYQIALMRAEAEHLMKGT 226 W ++ K + E L A + L E K Sbjct: 172 HQTGIQENVHWQSRLWNLLIEDTRKDYDELLFTTSHRAYLQQKFFDKLEDLIEEEYKKLP 231 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSS 284 I + G + + ++ + + + + + + S Sbjct: 232 -KRIFVFGISSLPTTQFATLLKLSEYCDVHLFFLNPSQMYWGDSIENVALEKMALKQQLS 290 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 T +LL + D + + + Sbjct: 291 ETEIQQLLAQQGNQLLSMWGKQGRDFFDQLAEYSPEPIELFFENDQERNLSRLKQAILNN 350 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLAR 400 + + + + + + E + L ++N ++ AD Sbjct: 351 DNPSYLEL-ENDNSIQIHNCHSAMREVEVLQNQLLRLFEQNPHLSPKDIIVMAADIEQYA 409 Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-- 451 + I IS S +L A+ L++ Sbjct: 410 PYINAVFSRYGREDNRYIPFTISDQKISQVDPVISSFLVMLKLRDSTFSAEALLDLLEVE 469 Query: 452 ---HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 L + + + + S + Sbjct: 470 AIGQQFGFNREDLTCLRHWIKESGIRSTLTIEQENGWQNYNSWENGLDRLLLGSCLKEEN 529 Query: 509 QSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + + L + + + + + + IS W + ++ V + Sbjct: 530 GIWQNTIAFNESYGLSAERVGKLAEFIEKLTAWSVLSLESHPISTWKQALENLVKAVYQE 589 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L+ + + L +L + +++ + ++ ++ Sbjct: 590 NDASNDALFLIQ--QELEALEALVLQAKFDEAVAFEVIERALQDRLNSQSHVMHFMTG-K 646 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + L R + F + L G+NE +P+ N F + + Sbjct: 647 VNFCTLLPMRAIPFKVVCLLGMNEADFPRQPMINSFDLMQYHPRKGDRARREDDRY--LF 704 Query: 688 FEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGG 724 E + + + + S + + + Sbjct: 705 LEALLSAEEVFYISYVGKSLVKDEKREPSVLVSQFVDYLA 744 >gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] Length = 1157 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 91/827 (11%), Positives = 208/827 (25%), Gaps = 108/827 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234 A + K +T + + + I++ Sbjct: 340 AAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLDHILLDE 399 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITE---KSTNITS 283 + + P +++ +A N + D + + Sbjct: 400 AQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAANGRII 459 Query: 284 SNTTYSTHPQ-------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 T+ Q YS D L + N + + ++ Sbjct: 460 QKKAQQTNQQFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSAENTKTVHEAIRVHSP 519 Query: 337 SDMRNTDILENK----IPNIQKCFSDVALIEADNEREEAISIAIALRM--------SLDE 384 ++ D + + + + E + A +IA L+ L Sbjct: 520 GEVIIWDAISKETSEFPHDWHLSVDHLDTPEVRLAEKIAETIADWLQKGEILPAKGRLIR 579 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 L+ + L I + + + L+ + L +L + + D + Sbjct: 580 ASDIMILVRKRDKFVSALSRALKHLNIPVAGADRLQLTKHISIRDLMALGRFVLQPQDDL 639 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 ++A ++K PL F E Y A +L + D + T + Sbjct: 640 SLACVLKSPLFAFSEEELYQLAAHRTGSLWQSLCTHASSQVSFKDAFERLNHY-RTLVDK 698 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 V + S + DK +L + L + + L+ Sbjct: 699 IPVFEFYSHILNNDKGRQKILSRLGSEANDVLDAFMDYTLAIQKTG-----LPGLQAFLE 753 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + E + + ++A + +D + Sbjct: 754 TLTASEPEIKREFEQNN-----EEIRIMTVHAAKGLEAAIVFLVD-------PGSAIWHP 801 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L + ++ N F +++ + ++ Sbjct: 802 QHAPHLLKVPLNNAQG-----------NGQQAFIWRPNEKFDTKLSKQAISHLKERAEEE 850 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + ++ S +L+ +K + W Sbjct: 851 YRRLLYVGMTRAEDRLFIC---GYKGQKTPSHTWLQLVKKALEPHAVAIKGPAEDIAAWR 907 Query: 743 R---------------KLDYTTKQPHY-------KRPKPFPPLEAQPRTYSFSEIKQLIN 780 P PL+ + S +L + Sbjct: 908 YCITSSSASINQEVSCAESQALPPLPAFFSHKVSVEPVLPKPLKPSVASLSIEADTELSS 967 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P ++ +L + G L H ++ L K + + I Sbjct: 968 SPKQLFTSPVLG----EINTNRAFFIEYGHLIHRLLQYLPDCPPQKRQDYARNYL-NIKA 1022 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 SH+++ + +W KI + + + S + V + + I ++G Sbjct: 1023 SHWDESQRERALRHVW-----KILDHV--YLKPLFSEQSRAEVPLMGIVKIRGKEQAISG 1075 Query: 901 FADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 DR+ + K+ + D+KTG P + Q++L L+A Sbjct: 1076 QIDRLYITKN-SIIFADFKTGIPPENEAAIAPHHWLQMALYRKLLQA 1121 >gi|325145090|gb|EGC67373.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis M01-240013] Length = 1069 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 107/903 (11%), Positives = 219/903 (24%), Gaps = 92/903 (10%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L+ L + + + + L++ + L A V Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWRQPATVDEWVGRCRGLLKTLFQAEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRL----------------LVLGGTDFFDNLKKR-----------GQCYLDWTRKL 745 S L L L +R D+ L Sbjct: 697 SSLLGELIDTVAAMTGTNSRQLAQNLIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAAL 756 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 T +P E + +P V+ ++ L + Sbjct: 757 GQT-PEPPQPFFDQSVENAEPVAEIGQDEFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPA 815 Query: 806 TDR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 I I+ R + +I + +W+ F + Sbjct: 816 EPFEPQHADQIAETYIEARREGR--DFAQTAARIGAESL---LPSGELGRLWQQDFQTAA 870 Query: 865 HSF 867 Sbjct: 871 KQI 873 >gi|313667895|ref|YP_004048179.1| exodeoxyribonuclease V [Neisseria lactamica ST-640] gi|313005357|emb|CBN86790.1| exodeoxyribonuclease V [Neisseria lactamica 020-06] Length = 1069 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 107/898 (11%), Positives = 223/898 (24%), Gaps = 82/898 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSALQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRCVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 L + LA LADI D +W D + L Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILGLGDDEIWQSKLWCYLD---- 176 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + +++AL E L + G + P +L+ ++ H + Sbjct: 177 -----DGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVF 231 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + W + E + + T + L L D + Sbjct: 232 VFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLSEMEI 287 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 E + L +D++N + ++ + ++ A + E + Sbjct: 288 EGETPVFEEGGRDTLLHVLQTDIQNLKMPSETAGSVNTDDGSIRIVSAHSPLRELQILKD 347 Query: 377 ALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLH 426 L L E+ A++T + + + +S Sbjct: 348 KLLQILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPF 407 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNS 482 L L + + + + L++ + L A V + Sbjct: 408 FYALECLSDLLESRFEVDKVLALLETAPVLCRFGLTEDDLPLLHDMVADLNVHWGLDGEM 467 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTN 540 D + +P + + ++ + D + + T Sbjct: 468 RGGTDRLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTDLFGRFAAFIETLSDI 527 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 ++ +W L+ + E + E +++ + + Sbjct: 528 ARIWRQPATVGEWVARCRDLLETLFQVEGDDQKAVQSLENEWVKWQAETELAQFSGQLP- 586 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 I I R +D E+ + + R L F + L GLN+G +P+NT Sbjct: 587 -PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKA 643 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQ 717 F + E R L + R+ + S L Sbjct: 644 AVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAPSSLLG 701 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRK-------------------LDYTTKQPHYKRPK 758 L+ N ++ Q +++ + P+ Sbjct: 702 ELIDTVAAMTGANSRQLAQNWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPE 761 Query: 759 PFPPLEAQPR-------TYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRG 809 P P P E + +P V+ ++ L + + + Sbjct: 762 PPQPFFDNPVESCEPVAEIGQDEFIRFWRNPVKVWLQQQLAWHEPYIDPAWEPAEPFE-P 820 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 I I+ R + + +I + +W+ F + Sbjct: 821 QHAEQIAEIYIEARREG--QDFSQTAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] Length = 1156 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 82/814 (10%), Positives = 186/814 (22%), Gaps = 84/814 (10%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTKGPIIIAG 234 +Y+ + L RAEA + I++ Sbjct: 345 AILILSDAVLRYYETEKLRRGYLDFEDLVVKSAQLLSRAEAAQWVQYKLDQGLDHILVDE 404 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P ++ +A + D + Sbjct: 405 AQDTSPRQWEVIRALAEEFFAGDGAREKVRTIFAVGDEKQSIYSFQGAVPAYFAEMRKFF 464 Query: 287 TYSTHPQY----------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP-PD 335 S D L + + ++ Sbjct: 465 ARRAEEAQKNFEGIELNLSFRSTPDVLGAVDKVFDTPETYKGLSQDNVAPVHEAIRHNDP 524 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDE----NKKKSA 390 + + I N A IA ++ + Sbjct: 525 GRVEIWPLEEAVETLEPDDWTQPIDAIGTGNPMLRLATRIAEQIKDWDERNIAGPGDVLV 584 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 L+ + EL R + S + L+ + L +L I D +++A ++ Sbjct: 585 LVRKRGPFVEALNRELKRLDVPAAGSDRLVLTDHIAVKDLVALGRFILLPEDDLSLACVL 644 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 K PL + L +A L+ ++K T + Sbjct: 645 KSPLFGLLDDD---------LFEIAHETPGVPRPGTLWHELLRKSENSEKWQTVRKQLEV 695 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 D I+ ++ T + + ++ LT+T ++ Sbjct: 696 WRDRADFVPPFEFYAKIMGTDGYRQKFRERL-GTEVDDVLDEFLSLTLTYEKSGTPGMEG 754 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 L W E + + + + + ++ ++ P + + + Sbjct: 755 FLA--WLAEAPTEIKRELNAAKGMVRIMTVHGSKGLEAPYVILADGCNAPVSSLHAPVMV 812 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 L+ + + L L E+ + Sbjct: 813 EKQRAGDTEAAPALVWL-----------PNKAQRTAWHEEALELLADEQKEEYRRLLYVA 861 Query: 691 ANGTRHLIYTRSLRENNIPTIASRW-LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 + + P + L R ++ + ++ ++ Sbjct: 862 LTRAKDRLVVCGWSPKRGPHDECWYTLTRNGLIEEAREQTDANGEVSAWIWTKGGIEKPE 921 Query: 750 KQPHYKRPKPFPPLEAQPRTYS--FSEIKQLIN--DPYAVYARRILKLDFIPHFKKDPDR 805 A P S S +++ A + K + Sbjct: 922 PVLPQSEKAESQQQAAMPDWISKNVSAPERIRRLKPSAAFEEMEAKESIEQQDPKDALEA 981 Query: 806 TD--------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 RG + H ++ L ++ + + FE + R Sbjct: 982 ARQPEDWPLVRGRIVHRLLEFLPDLPEDQRIVSTERFLASSLPERFEDK----------R 1031 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVD 914 L E + +P + + + + + G DR+ L+ V Sbjct: 1032 ERLLDDVLGTLGAPEFAELFSANGRAEVPIQGMLTGEDGKPVEIFGLIDRL-LVNDEEVI 1090 Query: 915 ITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 I D+KT + + QL++ L Sbjct: 1091 ILDFKTNAYVPRSVQDVSETYVAQLAVYRKLLSE 1124 >gi|157738276|ref|YP_001490960.1| hypothetical protein Abu_2073 [Arcobacter butzleri RM4018] gi|157700130|gb|ABV68290.1| conserved hypothetical protein [Arcobacter butzleri RM4018] Length = 783 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 69/377 (18%), Positives = 133/377 (35%), Gaps = 40/377 (10%) Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 S T+ +LG LE+R ++FDT+I+ NE PK + K+ FLS ++ NL T Sbjct: 415 SGTITVLGLLETRAVSFDTVIICDFNESYIPKISVKDKFLSTRLKQLANLPTQFDRESLQ 474 Query: 685 AHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + ++ + +++ + E N SR+ L ++ + Y + Sbjct: 475 KYYYKRLISSSKNVFISYVNSETN---QISRFANELFEKNIVTDTNDSFYKHILYDNHKI 531 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + +S + K + Y + ILK++ P Sbjct: 532 SYFDEDIISKI---------DLTKFIWSATSFKNFLECKRRFYLQYILKINEH-TISLKP 581 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + G + H+I+ + K + I+ F K + ++ K Sbjct: 582 KGYELGDIIHSILEDYYSKDNKNS-----------IEELFLKYKSSNPFLTLDLEVWKKK 630 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD- 922 +F E +++ + + I + + I++ G DR+D + ++ DYKT Sbjct: 631 LLNFYEFDKQRLKNRKIIMIEKEFNCSFN--NINIKGIIDRVDKFEDN-YEVIDYKTSST 687 Query: 923 --NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 +T +K +D QL AL+ + FY L + + + Sbjct: 688 LNVDTLKTYEKSVDFQLEFYYIALQQ-----LFKTPNIKAFYYDLNE----YLLKEEVAI 738 Query: 981 YSADELSEKSLKNLIEI 997 EL L E+ Sbjct: 739 QEKLELLSSKFDELKEL 755 >gi|313900244|ref|ZP_07833740.1| hypothetical protein HMPREF9406_0760 [Clostridium sp. HGF2] gi|312954953|gb|EFR36625.1| hypothetical protein HMPREF9406_0760 [Clostridium sp. HGF2] Length = 899 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 84/637 (13%), Positives = 185/637 (29%), Gaps = 69/637 (10%) Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 A N+R+E + A + D + + A+ + R+ I Sbjct: 187 FFHAVNKRQEIEACAQYIIE-HDLDADDIHITLANATYKPILAQIFQRYQIPYT------ 239 Query: 421 LSTTLHSSILTSLLNAIFKLN---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L H+SIL +A+F D + ++ + E + Sbjct: 240 LLQDSHASILPHRFSALFSYYLKPDTENLLRVLDCGVVHM--------------EQLQKL 285 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + D++ + + + ++ +E A L+ ++ + PL Sbjct: 286 KDYLDVFSCDIEEAFDHLQQIEDEGHILDALELAKLQKLEEEAELVRQQLVVYLRPLKQP 345 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + + +++ D+ L E K L + + Sbjct: 346 ISME---------AMIQTAASYVRESLRRDDADTKILLDIEAMLKELHPYILEKED---- 392 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 I +DG T + S + +S L + G + +P Sbjct: 393 --------IAFFLYFLDGMTQSSAPTERSGAIVCDLRQSPFCR-KHLFVLGCTQKDYPAF 443 Query: 658 TAKNPFLSRVMQSDLNLKT--AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 K + ++ +Y M + + L + + Sbjct: 444 QTKKGIFDENYHALISAYPSMERRYQFYLKQISAMLYAAPSVYVSYPLGTYEGKGMEAAL 503 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 V N K Y ++ +T ++ + S S + Sbjct: 504 EIEDYVQKQHA---NPKAGSVAYPLYSSYEPVSTNITLSPEMAQALFVKDKMIRGSISAL 560 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ + P++ + R L L GTL H ++ K T + Sbjct: 561 ERYVKCPFSYFLRYGLSLREPMKVGFPDSYA--GTLAHYLLETFTGKYGKAYTKVAEEKI 618 Query: 836 KQIIDSHFE-KENLPPHIDIIWRHLFHKISHSF-----LEHEEKIQSSIEKIFVNIPAKM 889 ++++ +++ P ++ ++ +I S L + + S + Sbjct: 619 EEVLMKEIRIMQDVFPSLEKKLENVAQRILTSMTQTLGLLDDFEQHSILSPYLREKEFHY 678 Query: 890 AIESIG---IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALK 945 +I + L G+ DRID F+ I DYK+ + + QL + + Sbjct: 679 SIPLGDDISLALKGYIDRID-ASDEFLCILDYKSSAKMLSEANVFAALQLQLLTYS-IVC 736 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + F + +V FY+ LK + ++ Sbjct: 737 SKEFHK----RVIGSFYVSLKNENIPYTAGKLSRRKP 769 >gi|313673704|ref|YP_004051815.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM 19672] gi|312940460|gb|ADR19652.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM 19672] Length = 921 Score = 123 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 73/469 (15%), Positives = 151/469 (32%), Gaps = 79/469 (16%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 I + + + L I+G LE+R L F+ + + +NEGV P +P + Sbjct: 485 IFKEISKDILIPFEGSPLKGLQIMGILEARGLKFEHIFIPDMNEGVIPSVDKVDPLIPES 544 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTRSLRENN-IPTIASRWLQRLLVLGGT 725 ++ + L + E+ ++F + + + + SR++ +L Sbjct: 545 IKRIIGLPSYEEKEILMRYNFFRLVYSAKKVYLFFKTGVGDNSKFVRSRYVDQL------ 598 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 R Q + + + P ++ P + ++YS + + ++ PY Sbjct: 599 -ILKEELDRNQEFANI-YQPKSNFFTPKHEDLSFQKPCDISLKSYSPTALDCYLSCPYRY 656 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINHLMKQIIDSH 842 Y R I ++ + D G++ H I+ EL K + E + + S Sbjct: 657 YLRYIRQIPPAVNIDSDFKADRVGSIVHAILEETIELGKPVKDSFLVENALNIIDCVRSQ 716 Query: 843 -------------FEKENLPPHIDIIWRHLFHKISH----SFLEHEEKIQSSIEKIFVNI 885 + L + + +F KI FL+ ++ + I + Sbjct: 717 NKRITTKINNEGNLKNYILD--MSELEYEMFRKILEYRFNRFLDVHFDDENLRDSIVMAK 774 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG-----------DNPKKETAQKL-- 932 + L G DRID L+ + I DYKTG + + Sbjct: 775 EKGIKKG----KLEGVIDRIDKLRD-KLIIIDYKTGSSLKSPSKSKVTQLSDKIYELGIN 829 Query: 933 -----------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 QL S+ + ++Y+ K I + +K+ Sbjct: 830 REDLLYLKENLKSVQLLTYIVLAM----SKYKADEYEAIYYLFGKNNGNIKKFSVEKEVA 885 Query: 982 SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 + + ++ E + L ++ + EY+ + R Sbjct: 886 GIIDYI----------INHIEKTEHIYP----LPDRDCVYCEYNRMCRF 920 >gi|329667336|gb|AEB93284.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii DPC 6026] Length = 1158 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 113/1031 (10%), Positives = 258/1031 (25%), Gaps = 170/1031 (16%) Query: 46 SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V I VP RA+ +L L I S + + Sbjct: 32 DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVKKL-HILSFSRLAWYFLR---DEAIK 86 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 L + + ++ L +++ +++L + L + + Sbjct: 87 LPQILDDAASVMLLEQIVKDHQDELKLFQNQTQVT---------------SGALRQMYEA 131 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 I + +L + +K L+I + ERL E A+ L+ Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + + ++ + K+ Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N Y + + + L + + + S Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395 T + ++ + ++AD+ EA +A + + + + ++ + Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L + I + + +L + + L+K L Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402 Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + + LE L + + + + +S Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT-------KSLKSFVDADVIALDKSEK 455 Query: 513 SEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEH 569 ED + +D + + L + + + + + + D Sbjct: 456 EVEDLDRLRDYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNRVAKRLESWRKEANDTG 515 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 E+ TL+ L + K + ++ D++ + Sbjct: 516 DLQLAQQPEQVWSTLTDLLKDYL--LVANKFSVDQFFDLLISGFSEANFSQIPSTLDAVN 573 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681 I + + + + G P+ F S LN L+ +K Sbjct: 574 ISELGMVQGQGYKQVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKIN 633 Query: 682 GQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ- 736 + ++ + + + + N S + ++LL L D F Sbjct: 634 NLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFAQHDLPQNN 693 Query: 737 -----------------------CYLDWTRKLDYTTK-----------------QPHYKR 756 D LD T + P Sbjct: 694 GDVLTFITNPEASLGYLTYLKNKAATDVESLLDMTEEKIGEIAKNVLEGSSFKNIPQDLS 753 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P+ L S S+++ + + + L L F+ + D G +H Sbjct: 754 PELAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETF 811 Query: 817 TELIKKRIN------KNTPEINHLMKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISH 865 L+K+ T E + + ++E L + H + + Sbjct: 812 DYLVKRIKEKKLNFADLTEEKLGELLIEVREELKEEGRYRQLLNDPFNKYLFHKLDQTTA 871 Query: 866 SFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK 909 + + + + + + + + L G DR+DL + Sbjct: 872 NVAHYWHSNVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQ 931 Query: 910 -SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVAN 959 + V + DYK+ + + Q+ LK + F+Q V Sbjct: 932 VNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLG 987 Query: 960 LFYIRLKQKFK 970 FY + + Sbjct: 988 AFYQSITSSLE 998 >gi|298369988|ref|ZP_06981304.1| exodeoxyribonuclease V, gamma subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281448|gb|EFI22937.1| exodeoxyribonuclease V, gamma subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1070 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 111/902 (12%), Positives = 239/902 (26%), Gaps = 92/902 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L + I V ++ + L G + + SL + + L+ P Sbjct: 29 ALVAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S L L R + +++ L + LA LADI D Sbjct: 86 FSPEVMRWRLLDLFRSERFQTASEFENVRSVLQSYLGSGDSADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 +W D L L ++ W + W R ++ S + Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + G + P +L+ ++ H + + + + Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQYWGNVIEAA-Q 250 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPP 334 ++ + + HP LL L + D E V + L Sbjct: 251 LLKGGDEADLSQTGHP------LLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHC 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390 +D++N + V ++ A + E + L L E+ A Sbjct: 305 LQNDIQNLRMPSEHSRTDLLGDGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIA 364 Query: 391 LITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 ++T + + + +S L L+ + + Sbjct: 365 VLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQPLLYALEQTLDLLESRFEVD 424 Query: 445 AIATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + L++ L + L A V + D + Sbjct: 425 KVLPLLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGAADNLFTWQQALERIV 484 Query: 501 NNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 +P S L + + +D + + + T + +WT+ Sbjct: 485 LGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRFVAFIRTLSRLAAEWRKPAAAEEWTERCR 544 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 +Q++ L + L ++ + L+ + G I I R + E+ Sbjct: 545 DLVQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES- 601 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + R L F + L GLN+G +P+NT F + Sbjct: 602 -QAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARR 660 Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 E R+ L + R N+ S + L+ K+ Sbjct: 661 DDDRY--LFLEAIISARNILYLSYVGRSIRNDDELAPSALVSELIDTVAAMTGRRSKELA 718 Query: 736 QCYLDW----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + +++ TR+ ++ +PF + + + + Sbjct: 719 EHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYADALNRPREQARPFFSEALEENSPAPT 778 Query: 774 EIK----QLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + +P + ++ L + + + L +R N++ Sbjct: 779 VWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQD 838 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E + E + +W+ F + ++ + I Sbjct: 839 FQETAVRLDA------ESLLPAGELGKLWQQNFQAAAKR-IDGALLQSPKLPPFAYEIQF 891 Query: 888 KM 889 Sbjct: 892 DG 893 >gi|194099143|ref|YP_002002228.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae NCCP11945] gi|239999442|ref|ZP_04719366.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02] gi|268595261|ref|ZP_06129428.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02] gi|193934433|gb|ACF30257.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae NCCP11945] gi|268548650|gb|EEZ44068.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 35/02] gi|317164690|gb|ADV08231.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae TCDC-NG08107] Length = 1069 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 101/876 (11%), Positives = 217/876 (24%), Gaps = 68/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAADRMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + + + I +E Sbjct: 782 QDE------------FIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFEPQHA------ 823 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 824 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 858 >gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1134 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 115/1078 (10%), Positives = 250/1078 (23%), Gaps = 153/1078 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTIL----------PIIKSLGDVVEEKFTADLLL 95 + T++A EL + L P+ + ++ Sbjct: 85 HILGLTFTRKAAGELAHRVRTRLDQLIRRLGRQGRDPHDDPLAGEPTVSTYHSYAGRIVT 144 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + L RLL A + L E + LA L + Sbjct: 145 EHGLRAGYEPTTRLLTEASRWQ-LVDLLVRNYDGDMSEVDRMPSTITDAVLALAGELDEH 203 Query: 156 IDIIETEEKKWEDLHALKNEKYGM----------------WWLLAADFLKIASKYWTERL 199 + ++L A + L + + R Sbjct: 204 L-------VDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLLPLVRAYARRK 256 Query: 200 VELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + A R +H + + +++ + A L++ + Sbjct: 257 DDFEAMDFADQLARAARVARDHPGVGVIERDRFRVVLLDEYQDTSHAQVVLLNALFG--G 314 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G V D W + + + + + + L + E + Sbjct: 315 GHPVTAVGDPCQSIYGWRGASAGTLDRFPAEFARTDGSPADVLSLTTSWRNRPEILGVAN 374 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +S + + + D + V + +EA I Sbjct: 375 TLSVPLRAAGARVPELHAALSVRDPI------PHRTPGGQAGGTVHCALLETYADEADWI 428 Query: 375 AIALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A ++ + + + +A++ R+ ++ L G+ +D+ Sbjct: 429 ADSVLAAWRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRARGLPVDVVGLG 488 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T + L + D A+ L+ + G + + + R Sbjct: 489 GLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRREL 548 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + AT S E + L Sbjct: 549 TGDEGPEITVDALD--EATLVEALADLGPAQAYSAEGYARLRSYGMELALLRYRLDQSLP 606 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + +I ++ V ++ D +L + ET Sbjct: 607 -ELIADIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAA-----RFSGETPGATL 660 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A + ++ G + + +L ++ L +D + + G+ GVWP Sbjct: 661 AGFLAYLAAAEDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVR 720 Query: 660 KNPFL-------------SRVMQSDLNLKTAEKYIGQA-------------------AHD 687 + +L L AE G A Sbjct: 721 NSDHWLGGLGVLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLA 780 Query: 688 FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + R L+ S +L+ + ++ Sbjct: 781 YVAVTRPRRLLLCSGYWWGEGTKRFRGPSVFLREVHDACLAGGDGHVVDAWTPEPAGDAV 840 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------Y 783 T + P T + + +++ + DP Sbjct: 841 NPTTETVLRAEWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVA 900 Query: 784 AVYARRILKLDFIPHFKKDPDRTDR---------------------GTLFHNIITELIKK 822 L L + + + + Sbjct: 901 RWRREADLLLAERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNP 960 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + T L ++ + P ++ + + Sbjct: 961 YARRGTAFHAWLEQRFGTDRLLDVDELPGAADEDAAPDEALAELQERFLAGEWADRVPVE 1020 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 V +P I G+ + G D + G D+ D+KTG P A QL++ Sbjct: 1021 VEVPFATVIA--GVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA-AVQLAVYRL 1077 Query: 943 ALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 A + + +V F Y+R + + + + + + +L E Sbjct: 1078 AWAE--LAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVPEIPGDLPERAN 1133 >gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1134 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 115/1078 (10%), Positives = 250/1078 (23%), Gaps = 153/1078 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTIL----------PIIKSLGDVVEEKFTADLLL 95 + T++A EL + L P+ + ++ Sbjct: 85 HILGLTFTRKAAGELAHRVRTRLDQLIRRLGRQGRDPHDDPLAGEPTVSTYHSYAGRIVT 144 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + L RLL A + L E + LA L + Sbjct: 145 EHGLRAGYEPTTRLLTEASRWQ-LVDLLVRNYDGDMSEVDRMPSTITDAVLALAGELDEH 203 Query: 156 IDIIETEEKKWEDLHALKNEKYGM----------------WWLLAADFLKIASKYWTERL 199 + ++L A + L + + R Sbjct: 204 L-------VDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLLPLVRAYARRK 256 Query: 200 VELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + A R +H + + +++ + A L++ + Sbjct: 257 DDFEAMDFADQLARAARVARDHPGVGVIERDRFRVVLLDEYQDTSHAQVVLLNALFG--G 314 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G V D W + + + + + + L + E + Sbjct: 315 GHPVTAVGDPCQSIYGWRGASAGTLDRFPAEFARTDGSPADVLSLTTSWRNRPEILGVAN 374 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +S + + + D + V + +EA I Sbjct: 375 TLSVPLRAAGARVPELHAALSVRDPI------PHRTPGGQAGGTVHCALLETYADEADWI 428 Query: 375 AIALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A ++ + + + +A++ R+ ++ L G+ +D+ Sbjct: 429 ADSVLAAWRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRARGLPVDVVGLG 488 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T + L + D A+ L+ + G + + + R Sbjct: 489 GLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRREL 548 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + AT S E + L Sbjct: 549 TGDEGPEITVDALD--EATLVEALADLGPAQAYSAEGYARLRSYGMELALLRYRLDQSLP 606 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + +I ++ V ++ D +L + ET Sbjct: 607 -ELIADIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAA-----RFSGETPGATL 660 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A + ++ G + + +L ++ L +D + + G+ GVWP Sbjct: 661 AGFLAYLAAAEDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVR 720 Query: 660 KNPFL-------------SRVMQSDLNLKTAEKYIGQA-------------------AHD 687 + +L L AE G A Sbjct: 721 NSDHWLGGLGVLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLA 780 Query: 688 FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + R L+ S +L+ + ++ Sbjct: 781 YVAVTRPRRLLLCSGYWWGEGTKRFRGPSVFLREVHDACLAGADGHVVDAWTPEPAGDAV 840 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------Y 783 T + P T + + +++ + DP Sbjct: 841 NPTTETVLRAEWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVA 900 Query: 784 AVYARRILKLDFIPHFKKDPDRTDR---------------------GTLFHNIITELIKK 822 L L + + + + Sbjct: 901 RWRREADLLLAERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNP 960 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + T L ++ + P ++ + + Sbjct: 961 YARRGTAFHAWLEQRFGTDRLLDVDELPGAADEDAAPDEALAELQERFLAGEWADRVPVE 1020 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 V +P I G+ + G D + G D+ D+KTG P A QL++ Sbjct: 1021 VEVPFATVIA--GVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA-AVQLAVYRL 1077 Query: 943 ALKAGSFSQIDCRKVANLF-YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 A + + +V F Y+R + + + + + + +L E Sbjct: 1078 AWAE--LAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVPEIPGDLPERAN 1133 >gi|332669680|ref|YP_004452688.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484] gi|332338718|gb|AEE45301.1| UvrD/REP helicase [Cellulomonas fimi ATCC 484] Length = 1166 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 97/903 (10%), Positives = 231/903 (25%), Gaps = 129/903 (14%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATAR 244 + ER +A R E + +++ + A Sbjct: 242 DLVAEYRERKRAADAIDFGDQVALAARLARDVPEVAAGERDRFRVVLLDEYQDTSYAQLT 301 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ + +G V D H W + ++ + L Sbjct: 302 LLGALFG--DGHPVTAVGDPHQSIYGWRGASAGGLESFPTSFPAVDADGRRRPADVHVLS 359 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + +R+ + +N + G + P + V A Sbjct: 360 TSWRNDRRILDAANVVAGPLRAAAARVEVPVLAA------------RPGAGDGRVHAHVA 407 Query: 365 DNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 D +EA ++A + + +A++ R+ V+ L G+ +++ Sbjct: 408 DTVEDEARAVAEFVAARWRPASPGTERVTAAVLCRKRSQFPAVQRALRAAGLPVEVVGLG 467 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T L + L A + A+ L+ + G + + A Sbjct: 468 GLLATPEVVDLVAALQAAHDPSRGDALMRLLTGGRTRLGAADLHALGAWADELAGRAGRR 527 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + I ++ W+SR E + + + + +T L ++ Sbjct: 528 AGRDTGVQADVVDERSIVDALDDLPRSGWRSRNGRELSDAGRARLAELARLLTALRSHTY 587 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 +++ +L ++ + + ++ F++ + + Sbjct: 588 LAVPEL----VAEAERLLGLDIEVAARAGTTPGRARANLDAFRDVAVEFARTADHPTLGG 643 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + W+D G + + ++ ++ L +D + + GL +G+ P Sbjct: 644 F--LTWLDAAEVRESGLDMPVAEPDPDAVQVITIHAAKGLEWDVVAVAGLVDGILPATRT 701 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHD-------------------------------- 687 + + L T + HD Sbjct: 702 RGQDGPKDSAWLTGLGTLPYPLRGDRHDLPVLAYAGAADHKDLDERRKQFLLDAGLHQVA 761 Query: 688 ------FEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + R + + + P S +L+ L G +++ Q Sbjct: 762 EERRLAYVALTRARSDLLLTAAWWGDSARPRELSSFLEELAEAGVVGSGSWVERPEQGVG 821 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL------------------IND 781 + +L T + P P + + ++ + D Sbjct: 822 NPRDELVLTAQWPADPFAVDGGPGRRPAVEAAATLVRDALAAGADSSGQPGGSRWEDLAD 881 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 R+ + + + L H E + E + ++ Sbjct: 882 RLLAEQERVRRPERGVELPAHLSASSLVRL-HADPAEFARGLRRPVPREPSPQARRGTRF 940 Query: 842 HFEKENLPPHIDIIWRHLF--------------HKISHSFLEHEEKIQSSIEKIFVNIPA 887 H E ++ + SFL +S + + + Sbjct: 941 HAWVEGWYGAATLVDLDALPGADDDSDLVDLEEAALRASFLRTPWADRS---PLAIEVDV 997 Query: 888 KMAIESIGIHLTGFADRIDLLKSGF------------------VDITDYKTGDNPKKETA 929 + +++ G L D + V + D+KTG P A Sbjct: 998 ETSVD--GYVLRSRIDAVFADDEAGREAAPQPAGAGAGAAVRPVVVVDWKTGAPPSDPAA 1055 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + + QL++ A + + + + + D L Sbjct: 1056 RASRELQLAVYRLAWSR---WTGTPLDLVRAAFCYVGTGETVYPERLLAEPEITDLLRRA 1112 Query: 990 SLK 992 + Sbjct: 1113 TAA 1115 >gi|240081301|ref|ZP_04725844.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA19] gi|268597406|ref|ZP_06131573.1| exodeoxyribonuclease V [Neisseria gonorrhoeae FA19] gi|268551194|gb|EEZ46213.1| exodeoxyribonuclease V [Neisseria gonorrhoeae FA19] Length = 1069 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 99/874 (11%), Positives = 210/874 (24%), Gaps = 78/874 (8%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E +++ + + I I R +D E+ Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E + +P V+ ++ L H + + + H + + + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPAEPFDPQHAEQIAETYIGARREGQDFSQ 842 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 843 TAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|261378928|ref|ZP_05983501.1| exodeoxyribonuclease V, gamma subunit [Neisseria cinerea ATCC 14685] gi|269144625|gb|EEZ71043.1| exodeoxyribonuclease V, gamma subunit [Neisseria cinerea ATCC 14685] Length = 1068 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 102/875 (11%), Positives = 221/875 (25%), Gaps = 69/875 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFAHIQKFKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLA-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNMLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L S + LA LADI D +W D L L +++ W Sbjct: 121 LGSSESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRLLGLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMHWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N D+ K NI + ++ A + E Sbjct: 283 NEMEIEEETPVFEEGSRDTLLHALQTDIQNLDMPSEKAGNINTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L+ L + + + + L++ + L A V Sbjct: 403 RRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ--CITPLV 535 + D + +P + + ++ + + + Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFIE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + ++ +W L+ + E + E + G Sbjct: 523 SLTDIVRIWRQPATVDEWVGRCRDLLKTLFQAEADDQKAVQNLE--NEWVKWQEESTLAG 580 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ S + + R L F + L GLN+G +P Sbjct: 581 FVGQLPQQTVIRHIRRFLDSES--EAGFLRSGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ ++ + +++ + + + Sbjct: 697 SSLLGELIDTVAAMTGIGSRQLVENWIEQH-------PLQPFSHRYFQTGSRSDGIFSTR 749 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 ++ + + P + + + N + ++++++ + P Sbjct: 750 TDYAEALECPSGQPQPFFDNPVESCEPVAEIGQEAFVRFWRNPVKAWLQQQLSWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 + + + E + F Sbjct: 807 -YIDEAWEPAEPFEPQHAEQIAEIYIEARREGQDF 840 >gi|295424858|ref|ZP_06817573.1| ATP-dependent exonuclease subunit B [Lactobacillus amylolyticus DSM 11664] gi|295065424|gb|EFG56317.1| ATP-dependent exonuclease subunit B [Lactobacillus amylolyticus DSM 11664] Length = 1161 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 109/977 (11%), Positives = 230/977 (23%), Gaps = 151/977 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + L+++I +N L I +D + Sbjct: 71 SFSRLAWYFLKDAEVGLPTQLDDAAAAMLLSKIIQDKQNDLMLIKEDKPNSGTV------ 124 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 K L D I + +D E L+I + E+ Sbjct: 125 -------KQLYDTILQVHDGNLDLDDFSD---ENLNEETRKKLHDLRIIYDAFIEKTA-- 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S + + + + + Sbjct: 173 GRFSTKNEVQLQLNQVLAKNQNLKTASFYFTDFSHFSLQEQLTIKLLFRKAKNVSLAFKT 232 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 N + Y Q ++ KL+ FLD +R + Sbjct: 233 QLG------------DINPKAEEGDYDYVIQQTIHKLVSFLDERRISYQTEAYPLQPKQS 280 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 +++ + V L+ AD+ EA +A + + Sbjct: 281 GRELLNGIWTQTI---------------PANDELKQVQLVRADSRYAEAYFVARTIYQQV 325 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++ + + L + I + ++ +L Sbjct: 326 ALNNYRYRDFLILAPNLHEYETYLTPILRQNQIPYFDDLQQEMKYHPLVVLIENLAKL-D 384 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + I T++K L + E + LE L N KS Sbjct: 385 ERLSTQNILTILKTRLLIPSWYQDEASYLHDVDELENFVLAHGINYDLWK--KSFSDFVK 442 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD--WT 554 A P R+ + + + + K T ++D Sbjct: 443 AEVIRLDKQPEEIGRIDKLRSYIIDKVTQLFTDLNAENNKEGSRKAITIFFNFLADNGAI 502 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 D+ E+ L L + + E+ ++ Sbjct: 503 SQLEKWRSE-ANDKGDLQQAEQPEQLWSLLMQLLRDYLLISPD-HFDQDEFFKMLISGFK 560 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + I + + + + G G PK FLS + + Sbjct: 561 EANFSQIPSTLDAVNISEIGMVQNNGYKQVFIIGATSGNLPKIQKTPGFLSSENLAQMAA 620 Query: 675 KTAEKYIGQAAHDF-----------EMANGTRHLIYTRSL-RENNIPTIASRWLQRL-LV 721 E + D +A + + + N S + +RL Sbjct: 621 DFDEDSYLEDRQDLNNLDQDYQFGLALALAEDRVYLSYPVLNAANEELKPSLFYERLKQD 680 Query: 722 LGGTDFFDNLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPK 758 +L Q L + LD ++ K Sbjct: 681 NAPEMSQHDLPDNLQELLSFITNPDASLGYLTYLKSISNSKAIEQLLDLAKQKLPQKTNA 740 Query: 759 PFPPLEAQPRT-----------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + S S+++ + Y + L+L F+ Sbjct: 741 VLKASIYDNQPVNIGEGLAQELYGQNLNASVSQLETFYENSYEYFLNYGLRLRKR--FEN 798 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPE------INHLMKQIIDSHFEKENLPPH---- 851 + D G FH L+K+ K + ++E Sbjct: 799 ELDVIQAGNYFHETFDRLVKELNRKKLDLGNIDQSELEKLLNEARLQMQQEGQYAQLMND 858 Query: 852 -IDIIWRHLFHK----ISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGI-------- 896 + + ++ ++ + + + + + + + + + + Sbjct: 859 PFNKYLFTCLDRTTSKVARNWRKSLIQ--TPLRAKYSELSFGLGEKVNGLSLPLSDLSGQ 916 Query: 897 ---HLTGFADRIDLLK----SGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAG 947 L G DR+DL + + I DYK+ I Q+ L Sbjct: 917 HKAQLRGKMDRVDLAPVSGKNQVLAQIIDYKSSAKKFDLSLFYSGISLQMVSYLDVLSKN 976 Query: 948 S--FSQIDCRKVANLFY 962 F+ + + FY Sbjct: 977 QQFFAGEEKLSLLGAFY 993 >gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] Length = 1196 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 103/896 (11%), Positives = 228/896 (25%), Gaps = 90/896 (10%) Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 +RL L ++ + P A +A + D + Sbjct: 291 DPAERLDLLRQVFFTKSGPPSKLGSVASKSVAERFPDLADRAQAAQAQIAGVFDRLAR-- 348 Query: 164 KKWEDLHALKNEKYGMWWLL--AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 L AL F + S+ +L A++ + + A + Sbjct: 349 -----LKALDASLIAYHLARRYIGGFAAMKSRQALLDYDDLIAATASLLEKSGASAWVHY 403 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNT 273 + I++ + + P ++ ++ + D + Sbjct: 404 KLDQGIDHILVDEAQDTAPLQWSVIGKLSEEFFAGEGARQARRTLFAVGDEKQSIYSFQG 463 Query: 274 ITEKSTNIT--------SSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + H + L + + Sbjct: 464 ARPERFAQERRSTQLKAEAAGVVFEHVPLRVSFRSSSEVLKLVDHVFASADAMRGMGDPD 523 Query: 324 SMVISKSFLP--PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 V+ ++ P +++ + + + + EA + A IA LR Sbjct: 524 EPVMHETARARAPGQAELWPMIAKQKSDDDDDWTAAFDDVPEAAPSAQLARRIATVLRDW 583 Query: 382 LDE---------------NKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTL 425 +D L+ + L GI + + + L+ + Sbjct: 584 IDNEMIEDQKTRKLRPITPGDVLVLVRKRDGFVPTLLRTLKAMTGIPVAGADRLRLTDHI 643 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L +L + + D +++A L+K PL + A L Sbjct: 644 AVQDLMALGSFVLLDEDDLSLAALIKSPLLGLDEDALFRLAAGRPDGLSVWNHLLELAKT 703 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L + +R+ + H+ + ++ L + Sbjct: 704 EPLFASARNRLVRWRAMAHIQPPHDFYATVLGPDGGR-----QAYLSRLGHEAGDVLDEF 758 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 L++ + + E E G + + ++A + Sbjct: 759 LGLTLDHEQAGLPGLQAFLAMLESDAPEIKREMEAGSGAVRIM--TVHAAKGLEAPIVFL 816 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +D + L+++ + + ++ + W + N + Sbjct: 817 VD-------SGGEAFQTSHQPNLWLIPQGPHQGSDGPSVPV-------WLPDKTYNNGAT 862 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI---ASRWLQRLLVL 722 ++ + E+Y A + R L+E PT AS +R Sbjct: 863 NPLRELAKEQAEEEYRRLLYVGLTRAADRLVVCGYRGLKEAKSPTWHTLASAGFERAAEA 922 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------PPLEAQPRTYSFSE 774 G + ++ R P P+ + P Sbjct: 923 GDYAVGEIEREADNTTFPVLRLQRAAPAPVAPGEPAADSKERTAAPAPIPSSPLPPPTRL 982 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPD----RTDRGTLFHNIITELIKKRINKNTPE 830 + L L F P +RG++ H ++ L + Sbjct: 983 PRPLAPSGVGAVLEDSANLANRSPFADKPAGSGAALERGSMIHRLLQVLPSIPPEERDAA 1042 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + +++ + E + + + F + + V++ + Sbjct: 1043 LERYLERALPGADRSEAGLIAGQVRSVLDDARFAGVFAAQQGE-------AEVSVMGTLR 1095 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALK 945 I ++G DRI +L V I DYKTG P QL++ A L Sbjct: 1096 IAGEERAVSGRIDRIAVLAD-RVLIVDYKTGLAPGSGEPPPHSHVSQLAIYRALLA 1150 >gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1183 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 111/888 (12%), Positives = 240/888 (27%), Gaps = 83/888 (9%) Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA-IWLAKNLADIIDIIETEEKKWE 167 L R ++ + I P + A + A LA+ I I Sbjct: 288 RLTGRERDDARRAEILEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASR 347 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 D L A + + E + + + + Sbjct: 348 DRLKLMRMYGATH--AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWI 405 Query: 228 G--------PIIIAGSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIW 271 I++ + + P ++ ++A P + D + Sbjct: 406 HYKLDRGIDHILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSF 465 Query: 272 NTITEKSTNITSSNTTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + S T S D L+ K N Sbjct: 466 QGARPERFSEESDRTRRRVSDSGQSFSTVRLPLSFRSTADVLEAVDHIFKAPENARGLSA 525 Query: 322 GRSMVISKSFL--PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL- 378 V+ +S P D+ E + A E+ A IA ++ Sbjct: 526 LGEPVVHRSSRIGHPGAVDLWEMVAPEAVMKEEDWTAPFDATPESAPAAILARRIAHSIG 585 Query: 379 ------------RMSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTL 425 + E L+ + L R I + + + L++ + Sbjct: 586 SLVGRETIVDKGKERPIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHI 645 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L +L + D +++A ++K PL + + A K Sbjct: 646 AVQDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAVAALRGDNQSVWSHLK----S 701 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 R A ++ + +S + + Q + L T ++ Sbjct: 702 FAADGTERFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEF 761 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 ++ T + E +++G+ + + ++A + Sbjct: 762 LTFTLDHETSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIM--TVHASKGLEAPIVFL 819 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +D G + L ++ T + + L + + A+ L+ Sbjct: 820 VD-------GGSKAFTHTHLPKLRLIETGPDEPPMPVWVPVSDLANSLTQDDAARIQMLA 872 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLV 721 L + + T H++ + +LR+++ A+ + Sbjct: 873 EEEYRRLLYVAMTRAADRLVVCGYRGVRVNNDTWHMMISTALRDDHPHVEATTFSGPDGE 932 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G + +R + + + + + +P PP PR S S +I++ Sbjct: 933 WPGIKWRVPRVERSFERIGRSEE-RGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDE 991 Query: 782 PYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 A +L + + + DR+ ++G L H ++ L + + + + ++ Sbjct: 992 D----AGGLLVVSPLFGETERSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAAR 1047 Query: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHL 898 P R L+ E + + + +E + Sbjct: 1048 -------FWPEA---ERRKLVDSVLKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAV 1097 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944 +G DR+ +L V I DYKT P QL++ L Sbjct: 1098 SGRIDRLAVLAD-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREIL 1144 >gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1] Length = 805 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 83/704 (11%), Positives = 192/704 (27%), Gaps = 120/704 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E+++ E+ G+ +P + + + + Sbjct: 93 QILAITFTNKAAREMKTRIAELVGEAIEGMPWLGTFHSIGAKI----------------- 135 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D + L + L + W A++LA +ID + + Sbjct: 136 LRRHAELIDLKSNFTILDTDDVVRLLKQ--LIQAAGLDDKRWSARSLATMIDAWKNQGLS 193 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----AE 220 + + + + + + +RL LNA + + Sbjct: 194 PDHISESDSYAFA------KGMGRELYHSYQDRLKSLNACDFGDLLLHSINIFQHNPDIL 247 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTITEKS 278 H I++ + A + +A + D W + Sbjct: 248 HEYHAKFRYILVDEYQDTNTAQYLWLRLLAQQSTRQQVNLCCVGDDDQSIYGWRGAKVDN 307 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + ++R + + S + + Sbjct: 308 ILRFEKDFPPA-----------KIIRLERNYRSTSHILKTASHFISHNQGRLGKTLFSDK 356 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396 N + V + A + EEA +IA + + A++ Sbjct: 357 TNNEE-------------KKVKIHAAWDSEEEARAIAKEIEQAQQSGHFLNDMAILVRAS 403 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 R + G+N + G + + L + + +D +A ++ P Sbjct: 404 FQMRAFEERFITLGLNYRVVGGPRFYERMEIRDALAYLRVVAQPSDDLAFERIINTPKRG 463 Query: 457 FGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G A + + +LK Sbjct: 464 LGETTLRHLHNNARARAIPLFSAAIEIIETDELK-------------------------- 497 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + L + + + T+LT L + + Sbjct: 498 ------------PKARNALRNIIEDFHRWQNLSPRTPLTELTEMILNDSG------YMEM 539 Query: 576 WFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 W E+ + + E ++ N +++ ++ ++D E + I+ Sbjct: 540 WQEDRSPEAPTRLENLKEMIRSMEQFENLHSFLEHVSLVMD----VEHNENMDAVNIMTL 595 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 ++ L F T+ L G EG++P + + + E+ A A Sbjct: 596 HSAKGLEFKTVFLPGWEEGLFPNQRSLD---------EGGRAGLEEERRLAYVGLTRAQQ 646 Query: 694 TRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735 H+ + + R + ++ SR+L L + G Sbjct: 647 NLHIWFVSNRRIHGLWQSSLPSRFLDELPGEHIEVLENETSYGG 690 >gi|240126168|ref|ZP_04739054.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679] gi|268684756|ref|ZP_06151618.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679] gi|268625040|gb|EEZ57440.1| exodeoxyribonuclease V [Neisseria gonorrhoeae SK-92-679] Length = 1068 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 101/876 (11%), Positives = 219/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + S L L+ ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 959 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 91/902 (10%), Positives = 227/902 (25%), Gaps = 119/902 (13%) Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM--WWLLAADFLKIASKYWTERLVELN 203 +AK L + D + E +E L + L A K + + L + N Sbjct: 156 WQVAKRLGEYFDKVTEELI-FEKLKKHVTQLSRPTNERDKFLYALTYAYKNYQQLLAKTN 214 Query: 204 ASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 Q + I++ + +++ T+A ++ Sbjct: 215 RVDFAHLQKCAYNLLQKRPEIIQGLRYILVDEYQDTNYIQEQILLTLARATESYNLVVVG 274 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTH-PQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D + T ++ ++ + +++ Q+ L + R + Sbjct: 275 DEDQALYRFRGATVRNILEFTTRSEFASACVQHHLTTNYRSHPQIIDFYNRWMRTLD--- 331 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--- 378 R+ + + + +DV +EA +A + Sbjct: 332 WRNGEHDRLSRTEKIIQADPQATFSDYPSVLTLQDADV--------EQEAEQLAELIYTL 383 Query: 379 -RMSLDENKKKSALIT--ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + A + ++ + GI + ++ + Sbjct: 384 KEQGRISDYNQVAFLLYSVRSYMSETYIEAFHKQGIAVHCPRARQYFEQEEIRLIIACFA 443 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 + + + + AL V + I++ + + Sbjct: 444 YLLDYDGMHQDTVMEYSAFPGYVRACLQQLHTHPALVQVLQLLKEEVVHIIEAREQPGKQ 503 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + + N+ ++ S Sbjct: 504 LLDYFYLLLFHP-------------------------AFSGFLANETQRTNLVAFSQHLA 538 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 ++ D G+ + + +AN E +++ Sbjct: 539 TFHRYYRDTSPD---------MSALGQAHARFMHTFLCLLYENEANLPENPNLLF----- 584 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN----TAKNPFLSRVMQSD 671 S + ++ +++ L F +I+G L++ + Sbjct: 585 --------PSDHVQMMTIHQAKGLEFPVVIVGRLDKASSLSRDEYKNENKHLQGFYHRKP 636 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 + + + +HL+ + R+ ++ Sbjct: 637 FEAEEKIATFDFRRLYYVAFSRAKHLLILTAKRQPHVEFAT------------------- 677 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + + + + P +PR I+ P R Sbjct: 678 -----IWRTAPESVYARDRLRLMPCAEAEPHTALKPRYSFTGHIQLYATCPRRFQFFRQF 732 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPP 850 + G H+ + + + +T + + I + F Sbjct: 733 NFVPRRAQEP-----ITGLAVHHTLERIHRLALEQPHTKLDDSKLISIFEYTFAFLAASS 787 Query: 851 HIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 I + L + Q+ + ++ + LTG D + + Sbjct: 788 PA-SIEASQREQALQQVLNYVHANQQALTTIADIEARFRVERD--RYILTGQIDLL-MQG 843 Query: 910 SGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 S +DI D+KT P+++ QL L A+AL+ ++ Y ++ Sbjct: 844 SQGLDIMDFKTSKRPEQDTDYLAFYRQQLYLYASALQ----ARTGQAPRRLFLYWTAEEH 899 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K + + +++ + E+VT +Q + F + HL Sbjct: 900 KKDALM----EIPYTPTHIQEANDYVEEVVTHIQRQD--FAIQQLPHPGVCKACDVRHLC 953 Query: 1029 RV 1030 R Sbjct: 954 RR 955 >gi|331002449|ref|ZP_08325967.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410265|gb|EGG89699.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon 107 str. F0167] Length = 1121 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 106/979 (10%), Positives = 249/979 (25%), Gaps = 136/979 (13%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + L L R+ K Sbjct: 66 SFNRLAYRIFEELDIENPKLIDELDKALILRRIANKVELKAWKKQFQKA----------- 114 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVE 201 N+ +I + E + + + + + K + + + Sbjct: 115 ----GFIDNIKALISEFMMYDISDEFIKEQQENKDINSLLKIKLEDIYKLKKGFGDYIA- 169 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ + I++ G G P R++S + + Sbjct: 170 -GKYFTNEQVLDILNENIINSDLLKDSIILLDGFAGFTPVQNRIISNLMKVCDEIRFCIT 228 Query: 262 L-DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 L P + T+ + + + +L D Sbjct: 229 LGKRVNPDIGLSESDLFFTSGKMISQINEMAKKADIKRLDD------------------- 269 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + F + L + SD+ + N EE +A + Sbjct: 270 INLNTGANTGFRNSKDLNFFEEHFLRYDGEKSEDV-SDIEINYCMNPLEEIDFVANKILK 328 Query: 381 SLDENK---KKSALITADRN-LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + + A+I D ++ + ++ I + + ++ + + + Sbjct: 329 LVKDEGYRYRDIAIIYGDLEGVSDSLINRFSQLEIPYYLDEKMDVNNNELVEFINACIAL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I + + A+ ++ L F + L LE + D L Sbjct: 389 ISENFSYDAVNRYLRLGLLGFECRKVSLLDNY-LLESGIRGYKRLHSDFTYLPKSFT--- 444 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + E +L + + + +I + ++ Sbjct: 445 ------ESEFEEINEFKKLAMEKVSVLYTAMSKSKINIKDVCDAFRKIFTEQNIEEKLEI 498 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 T L+ V +E + SLF ++ + E ID++ + Sbjct: 499 VRTELEEV----KDLKRAREYEGVLDEVLSLFERLELILEGEYISKKELIDLLHTGFEEI 554 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---- 672 + ++ + I +RL L + G N+G P ++ + L Sbjct: 555 KLGMIPDRVDRVVIGDLKRTRLSAIKALFVCGANDGKLPTVKDGGGLINDREKRKLKSIG 614 Query: 673 -NLKTAEKYIGQA-AHDFEMANGTR--HLIYT-RSLRENNIPTIASRWLQRLLVL----- 722 NL + L + + + S + + + Sbjct: 615 FNLSDTVREDLYTGRFYLYRMLTKPSNKLFISLTGMDFDGKTNRPSILINMIKSIFPNIE 674 Query: 723 ---GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------------------- 756 + + + + R+L Sbjct: 675 IKNKEDLEIYSKFEAKEYLTENLRRLRAKENIDEKLLKYISTFFDKDFIKKITSAAMYIY 734 Query: 757 ------PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 L + S + ++ P+ + L ++ + D G+ Sbjct: 735 KDSGIGESAARELFGEELRVSVTRLENYNACPFEHFISYGLGVEER--AIHSFNAADIGS 792 Query: 811 LFHNIITE---LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----FHK 862 L H+++ + K K + ++D ++ I+ K Sbjct: 793 LVHDMLEKCFKYAKFSKKKIAGMSEGELYALVDEAVKESMAYDKNSILEESKKSKVQLEK 852 Query: 863 ISH------SFLEHEEKIQS----SIEKIFVNIP----AKMAI-ESIGIHLTGFADRIDL 907 I L + + + E+IF + + + ++L G DR+D+ Sbjct: 853 IVRMTKLTMLVLAKQLEAGNFIPFDFERIFGEKDNLEALNIDLKNNAKMYLRGKIDRVDI 912 Query: 908 LK--SGFVD-ITDYKTGDNPKKETAQ---KLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 + + I DYKTG+ K QL + A+ + A F Sbjct: 913 CEENDKTLVKIIDYKTGNM--KWEMDMPYYGRALQLVIYLDAVMEQLAKEGREILPAAFF 970 Query: 962 YIRLKQKFKIDCITNDKKK 980 Y + F + Sbjct: 971 YYHIDAPFLTRDEAKKENA 989 >gi|325130750|gb|EGC53486.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis OX99.30304] Length = 1069 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 103/885 (11%), Positives = 230/885 (25%), Gaps = 69/885 (7%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + AL L P I V ++ + L + G + + Sbjct: 10 LETLA-ALFARIQKVKPLKSVLQPE-----QIIVQSQGMRRYLNTCLARDLGVAANLS-- 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 SL + K L+ P + L L + +D+ Sbjct: 62 -FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDY 120 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIA 191 L + LA LADI D +W D + +L +++ W Sbjct: 121 LGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILSLGDDEI---WQSKL------ 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W R ++ S + + G + P +L+ ++ Sbjct: 172 ---W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSE 226 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + + W + E + + T + L L D Sbjct: 227 HCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFL 282 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + E + L +D++N + + ++ + ++ A + E Sbjct: 283 NEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSVGTDDGSIRIVSAHSPLREL 342 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 + L L E+ A++T + + + +S Sbjct: 343 QILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVKIS 402 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L + + + + L++ + L A V Sbjct: 403 RRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWG 462 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCITPLV 535 + D + +P + + ++ + + L Sbjct: 463 LDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLE 522 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ +W L+ + E + E +++ + Sbjct: 523 TLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQKAVQNLENEWVKWQAETELAQFS 582 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + I I R +D E+ + + R L F + L GLN+G +P Sbjct: 583 GQLP--PHTVIRHIRRFLDSES--EAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFP 638 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ + Sbjct: 639 RNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISAREILYLSYIGRDIRKDEELAP 696 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S L L+ ++ Q +++ Y + RT Sbjct: 697 SSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRRYFQEGGRSDGIFGTRTDYA 753 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 + + Q P + + + + + +D + + N + +++++ + P Sbjct: 754 TALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWRNPVKVWLQQQLAWSEP--- 806 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + + + E + F + +I++ Sbjct: 807 -HIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAE 850 >gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030] gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030] Length = 1103 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 87/866 (10%), Positives = 213/866 (24%), Gaps = 137/866 (15%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F S + + + N + + + + + Sbjct: 284 RAMQFSDQVSFAYQAMMADPNIVES---------------ERAKWKVVFLDEYQDTSDSQ 328 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 +++ T+ G + D W +E + + Sbjct: 329 VKMLKTLFA---GLPITAVGDPRQSIYAWRGASELNIEGFPHDFVSPGQ-----RATSFT 380 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + +R+ ++N + GR S+ + N ++ Sbjct: 381 MTTSFRNSQRVLAIANAIAGRLPEDSEDTRLKPIT--TNNEVTSPLGDVEVSVTQGKTHP 438 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 +++ E+ L + A++ R V LT G ++ + Sbjct: 439 TYVSDQLES------LVEWMRGRTGHRAVLVRKRMHFAPVAQALTAAGFDVQVVGDAGGM 492 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL----------------SR 466 + ++LN + + L+ + G + Sbjct: 493 GDPFVADTVAILNVATDPHAVEHLMRLLTGRVCSLGAHDLRAFNTIVKNANAEASATPLT 552 Query: 467 AKNALELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 A ++ A R + + + L + + H+ R+ + ELA Sbjct: 553 AVECVDSFATREYSELSLQANERLRSLAFKLREVRKNHGGAIHMIRTIMRVFDMSYELAS 612 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + + T+ + +S T + D P E Sbjct: 613 LPHERAESHRANIDTFVSAVSSYVARNPTVSMTAVLAWLELANEHDAISPPPETLDESAV 672 Query: 582 KTLSSLFSKIIE---------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 ++ SK +E T + + +T ++ K L + Sbjct: 673 TIMTVHASKGLEFDAVALPFLTMGDLPTQPRSYQAWLTLGELPYPLRGDATKLPHLDLAQ 732 Query: 633 TLESRLLNFDTLI---LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + + + + ++ + L + A Sbjct: 733 EPHVSVSEMKNMFKQTQADKEDIEDFIDAGNIDEKQLPIRDQIALYHRRQERRLAYVAVT 792 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRL--------LVLGGTDFFDNLKKRGQCYLDW 741 A L + S +L + + + + + W Sbjct: 793 RAKAHLWLGASYWGHRT-TANQLSPFLLEAIGTLNVAGANIEIPESEPDKPEGLPVEVQW 851 Query: 742 TRKLDYTTKQPHYKRPK----------------------------------PFPPLEAQP 767 + ++ + P P Sbjct: 852 PPVISEAEQKKQSRTRDFVRSQAPLDLDSPVSIGDEGFHRVFARVQKIMSDARPQPPRVP 911 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S +++ + + Y R + + + GT FH + + + Sbjct: 912 QRMSTTDLVKYRAN-ADAYMREVQRPMPQQPSEY----AALGTAFHAWVERHFGQ--SAL 964 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 T M++ + +H K F + +F E ++ V +P Sbjct: 965 TDIHEAQMRKALPAHVRK-------------RFDSLVATF---ERSAYANRVPHAVELPF 1008 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 ++ + + G D + V + D+KTG P + QL++ A++ Sbjct: 1009 ELELGGRKVP--GKIDAVFKDGD-RVTVVDWKTGRKPS-ADILDTMATQLAIYVHAVQK- 1063 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDC 973 + +V + + Sbjct: 1064 -LPEYADCEV-GAEFYFVGSDETFTP 1087 >gi|240123968|ref|ZP_04736924.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID332] gi|268682596|ref|ZP_06149458.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID332] gi|268622880|gb|EEZ55280.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID332] Length = 1069 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 99/874 (11%), Positives = 210/874 (24%), Gaps = 78/874 (8%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSENVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E +++ + + I I R +D E+ Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + S L L+ ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E + +P V+ ++ L H + + + H + + + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEP-HIGEAWEPAEPFDPQHAEQIAETYIGARREGQDFSQ 842 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 843 TAARIAAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] Length = 1160 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 86/830 (10%), Positives = 209/830 (25%), Gaps = 110/830 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAG 234 A K + + I++ Sbjct: 340 AAFQLCARYLKIYANLKKANGFLDFNDLIERTLHLLKRQGASQWVHYKLDNGLDHILLDE 399 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P +++ +A N + D + ++ Sbjct: 400 AQDTNPEQWQIIQLLAQEFFTGHSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAENGRMI 459 Query: 287 TYSTH----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 YS D L ++ N + + ++ Sbjct: 460 QKKVQQVNQKFEKIQLNYSFRSTPDVLKSVDLVFEKPENYKGLSAENTKTVHEAIRAHSP 519 Query: 337 SDMRNTDILENKIPNIQKCF----SDVALIEADNEREEAISIAIALR--MSLDENKKKS- 389 ++ D + + + + E + A +IA L L + Sbjct: 520 GEVILWDAISKEKSEFPDAWHLSVDHLDTPETRLAEKIAETIANWLHNGEMLPAKGRLMR 579 Query: 390 -----ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 L+ + + L I I + + L+ + L +L + + D + Sbjct: 580 ASDIMVLVRKRDHFVSALSRALKLRNIPIAGADRLQLTKHMSVRDLMALARFVLQPKDDL 639 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRI--ATQK 500 ++A ++K PL E Y A +L + + + T Sbjct: 640 SLACVLKSPLFSLSEEELYQLAAHRTGSLWQSLCMHASHVSSHASFRDAFENLNHYRTLV 699 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + V + S + DK +L + L + + Sbjct: 700 DKIPVFEFYSYILNNDKGRQKILARLGSEANDVLDAFMDYTLTLQKTG-----LPGLQAF 754 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L+ + ++ E + + + ++A+ + +D Sbjct: 755 LETLSANDPEI-----KREFDQNHEEVRIMTVHAAKGLEASVVFLVD------------- 796 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 I + + L ++ F +++ Q L+ Sbjct: 797 -----PGSAIWHSQHAPHLLKTPSSHPQWSDQQAFIWRPNEKFDTKLSQQALSYLKERAE 851 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 + ++ + T WLQ + F + + Sbjct: 852 EEYRRLLYVGMTRAEDRLFVC--GYSGEKTSPHTWLQLVKNALKPHAFV-IDGPAEDIAA 908 Query: 741 WTRKLDYTTKQP-----------------------HYKRPKPFPPLEAQPRTYSFSEIKQ 777 W + ++ P + P PL + S + Sbjct: 909 WRYCITASSYAPIKQEVPCAEYQTLPSLPTFFSHKVPEEPALPKPLRPSVASLSIEADTE 968 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + ++ + +L + G + H ++ L K + + Sbjct: 969 ISSNLKYLSLSPVLG----ETNINRAFSIEYGNIVHRLLQHLPNCPAQKRRDYAQYYLNT 1024 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 SH+++ + +W+ I + + S + V++ + I Sbjct: 1025 KA-SHWQETQKEKALCHVWQ-----ILDH--SSLKPLFSDHSRAEVSLMGIVKIRGKEQA 1076 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 ++G DR+ + ++ + D+KTG P + Q++L L+A Sbjct: 1077 ISGQIDRLYITEN-SIIFADFKTGAPPEDEAAIAPHYLLQMALYRKLLQA 1125 >gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1091 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 87/837 (10%), Positives = 193/837 (23%), Gaps = 124/837 (14%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPAT 242 L + + E + + +++ + Sbjct: 240 LVDLAVRFQEEKTRRGLVEYSDQVAFALAICERVPQVVAEHRKRFRVVLLDEYQDTSVVQ 299 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 RL+ST+ G V+ D H W + + ++ + Sbjct: 300 TRLLSTLFG---GTPVMAVGDPHQSIYGWRGASAANLARFGADFAPTG------------ 344 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + +S + V+ + + + + P + + Sbjct: 345 ---AASADVPVYALSTSWRNPASVLGAANRIVEPLTAASRIPVARLEPRPDAGDGRLDVA 401 Query: 363 EADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISA 417 + +EA S+A L + + +A++ L G+ + Sbjct: 402 YEETVADEAASVAAWFADRLRQTGSDGRPRSAAMLCRSLKTIEPFTTALADRGVPFRVLG 461 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L L +L + + L+ + G + + + + R Sbjct: 462 LGGLLDQPAVVDLVCVLRVLHDPTAGSELVRLLAGARWRIGTKDVHALSRVAS--WLMSR 519 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + +++ + R + + + ++ L + L Sbjct: 520 DHAQKPLAEEVRDGL--RASVVPDEVGSVVDALDFVVDARDGHTALAGFSADGLARLRAA 577 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + +TV + + E + G Sbjct: 578 GRQLQVLRSRVGLDLVDLVTVVQQELLLDIEVAANETDPLGRASLEAFTEQVARYLQGDS 637 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPK 656 + E + IL S+ L +D + + + EG P Sbjct: 638 AGTLGPFLAWLAEAERRDNLAPRTEEPEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPG 697 Query: 657 NTAKNPFL------------------------------SRVMQSDLNLKTAEKYIGQAAH 686 + + E+ + Sbjct: 698 TLREKRGWVAFGALPFEFRGDSAELPSLAWRGAETQKEFAEAMEAFGEELEERNAAEQRR 757 Query: 687 DFEMANGTRHLIYTRS---LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 +A S P +L+ + +G + Sbjct: 758 LAYVAITRTRSDLLLSGSFWSTQQKPRGPGAFLREIQQVGLIAPDALPEAPELEENPLEP 817 Query: 744 KLDYTTKQPHYKRP-------------------------------------KPFPPLEAQ 766 P L Sbjct: 818 GSARVAWPLPPLGPREARVRAASDAVADADPGAETVWTRDIDLLLAERDARARDAELVDL 877 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P S K ++DP V AR + P+ + GTLFH + Sbjct: 878 PTRIPASRFKDFVSDPAGVAARLRRPMPERPYRQTRL-----GTLFHGWVEARYGPAGTA 932 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + +ID+ + + P + + ++ +F E + + V + Sbjct: 933 D----------VIDASGVELDADPTEPPVEQEDLDRLRATFEASEWASR---KPEEVEVE 979 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 M + + D + L+ G + D+KTG PK +L QL+L A Sbjct: 980 IHMELAGQ--VVICKIDAVFLI-DGRYRVVDWKTGRTPKDAADLELKQLQLALYRLA 1033 >gi|237786047|ref|YP_002906752.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] gi|237758959|gb|ACR18209.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] Length = 1175 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 103/848 (12%), Positives = 230/848 (27%), Gaps = 70/848 (8%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAI----QELRSEFIEITGKKSTILPII---- 78 + L + R + ++ S+ +K A + L S + I + Sbjct: 56 SSFLRDVARAEIMSGTNPDSILFLTASKEAAVQTNRWLLSAIEQGFDNDIAIERVFSGSI 115 Query: 79 -KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 +S+ + P RLL A + R+ L + + P Sbjct: 116 ARSVHSFAFAVLRHQAAHTPGALAP-----RLLTGAEHDSLVRDMLREHSERGADIWPER 170 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 S + A+ L D + + E+L W AADF T Sbjct: 171 -LRSALTTLGFARQLRDFLLRVAERGCTSEELRQYGQGCSRDEWSAAADFYDEYRA--TA 227 Query: 198 RLVELNASSPVGYQIALMRAE---AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 RL+ NA + A + A E I+I S P ++ L+ + Sbjct: 228 RLMGSNALNASELVRAAVDALDSDEELAESLNFDVILIDDSQFFDPLSSELVERFRSRAR 287 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 +V +++ +T T +T +L Sbjct: 288 LTLVA----SEQSESVFRFRGGSTTYADKLAKTENTIHLSGTKRL--------------- 328 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDM----RNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + + ++ + P++ R+ D + + +DV ++ + + E Sbjct: 329 --APPVAELAARVADATRHPESLRWAKEIRHQDAERLSDHSAEFGEADVRVLVSPS--AE 384 Query: 371 AISIAIALRMSL---DENKKKSALITADRNLARRVKLELTRFGINI-DISAGIPLSTTLH 426 ++ +R + + K A+I ++ A ++ L G+ + D I L Sbjct: 385 VAAVVDRVRRAHIVDNVQWKDIAVIVRSKSQAAPMRRGLLAAGVPVADDPTEIVLLEQPM 444 Query: 427 SSILTSLLN-AIFKLNDFMAIATLVKHPLAKFGFPEKY--LSRAKNALELVALRGNKNSY 483 + + A+ + + LV P+ L + V + Sbjct: 445 VRAILQAVRCAVGEDLTNDELERLVLSPIGGGDPITFRCILRGLRRGFMKVEFDNPVRAA 504 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 ++ + + + L E +L L I + + Sbjct: 505 ELTAITTTDDEDYGRSVFRAIDALRFILLGGELIDLTENLTAREKDLIMRVRSVIQAGQE 564 Query: 544 T--------CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 ++ D L+ + +L +E Sbjct: 565 AFYGGESVEAILWAVWDAAGLSEALANQSLRGGAVGSMADQHLDAVMSLFDAAGDYVERH 624 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 I+ + + + + + + +DT+++ GL E VWP Sbjct: 625 PHSTIT-SFVRFIVEQELPTGARDRRGPVREAVDVSPAHATVGKEWDTVVVAGLQEDVWP 683 Query: 656 KNTAKNPFLSRVMQSDLNLKTAE--KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 + + D + E + + + R L R + + Sbjct: 684 SLSETGTIFRQEEFVDFLDRGVEPGRPENRRGRYDDRLAEERRLFLVAVTRARRSLLVTA 743 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + G D +++ R L + L + +P + S + Sbjct: 744 VG-PHVSDDGTVDSDADIRSRFLEELAGDQALASSHGEPDAESSDSADLRALTSSGGSQT 802 Query: 774 E--IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + + L + + + + D + G H+ +L + + Sbjct: 803 QSPLSVLPECEFPRVLSPDSLIAELRRVVESEDSS--GHERHHAARQLARLALAAGDAPS 860 Query: 832 NHLMKQII 839 + Sbjct: 861 RESVITAA 868 >gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 121 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 98/861 (11%), Positives = 210/861 (24%), Gaps = 80/861 (9%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172 L + + I L ++ + +A ++AD I + E ++DL Sbjct: 319 LCAVLAREAERIGALLQRRRAVAARDRTQALLLIATSVADAIRREKQERGLLDYDDLID- 377 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 L S W ++ + + Sbjct: 378 ----------KTLAMLDRISAGWVHYKLDRGVDH--VLIDEAQDTSPKQWDIVERLIAEF 425 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G+ R + V + G T+ + S S + Sbjct: 426 TAGEGARENIKRTIFAVGDEKQSIFSFQGAVPREFAERRETLRSRFQKADLSFEKVSFNY 485 Query: 293 QYSLAK--LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 + L + R++ ++ Y ++ + + Sbjct: 486 SFRSGAAILQSVDHVFRDEDIYRSIHADTTYPVHQSLTDAGPSLIDLWELQQPDERQDLE 545 Query: 351 NIQKCFSDVALIEAD---NEREEAISIAIA---------LRMSLDENKKKSALITADRNL 398 Q F V+ + +R +A A+ L+ + Sbjct: 546 GWQAPFDAVSATSPEVKLAQRVQAEIAALISGGTLTGPVGSRRRLRYGDVLILVRRRGSA 605 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V L R I + + + L+ + L +L +A+ D +A+A +K PL Sbjct: 606 FDAVIQALKRGNIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLD 665 Query: 459 FPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + + + AL + D + L+ A + + + L D+ Sbjct: 666 DDDLFKLAWERQGSLRQALADQAATNDKFGIAQQRLNDCAKLALSQSPFSFYAWLLGGDR 725 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 A +L + L + + + W Sbjct: 726 GRARMLRRLGHEATDALDEFLELALAYERKAPA------------------TLQGFVAWL 767 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + + + + ++ + T P + L L + Sbjct: 768 RAADTEIKRDMEIARDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPQGNAG 827 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 ++ G V + + + + M L Sbjct: 828 PGTPSVMVWAGKKADDP----------PAVANARAAMIGDTEDEYRRLLYVAMTRAADRL 877 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---------YLDWTRKLDYT 748 I N + W + + G W Sbjct: 878 IVGGCQPGNRNEVREASWYDLICKGLERSGLPMQEIAGPDGAVKRFCRAEDAWPETAIAA 937 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 T + L + +E + AR + + ++ R Sbjct: 938 TAALPEPIAELPFWLSLPAPPLTPTERTLQPSSAEIDAARTARRGEPTDARER---ARQR 994 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 G L H ++ L + + + + D E + L F Sbjct: 995 GVLVHRLLQSLPEIAPTRRRDAAAGFLGRNTDPKIWPEADRTALADRVLALIAD--PRF- 1051 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 + + + V I ++ ++G DR+ ++ V I D+KT P Sbjct: 1052 ---ASVFAEGSRAEVPIIGRLRQPGGVPFLVSGQIDRL-VVSDEAVLIVDFKTNQTPPGN 1107 Query: 928 TAQKL--IDPQLSLEAAALKA 946 ++ QL+L A L Sbjct: 1108 ESEVPVTYLRQLALYRAVLAR 1128 >gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli] gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] Length = 1183 Score = 121 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 89/817 (10%), Positives = 208/817 (25%), Gaps = 84/817 (10%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233 A + + E + + + + I++ Sbjct: 360 QAALVLAGRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVD 419 Query: 234 GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + + P ++ ++A P + D + + + S Sbjct: 420 EAQDTSPIQWSVIQSLAEDFFSGESARPGVRTLFAVGDEKQSIYSFQGARPERFSEESDR 479 Query: 286 TTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--P 333 T S D L+ E + N V+ +S Sbjct: 480 TRRRVSDSGLSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGEPVVHRSSRIGH 539 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RM 380 P D+ E + A E+ A IA ++ + Sbjct: 540 PGAVDLWEVVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVGRETIVDKGKE 599 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGI-NIDISAGIPLSTTLHSSILTSLLNAIFK 439 L E L+ + L R G + + + L++ + L +L + Sbjct: 600 RLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLTLTSHIAVQDLLALGRFLLL 659 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 D +++A ++K PL + + K R A + Sbjct: 660 PEDDLSLAAVLKSPLFDLSEDDIFAIAGLRDDNESVWSHLKRF----AADGTERFRAAVE 715 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + + + Q + L T ++ ++ + Sbjct: 716 RLELFLRQSRHLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPG 775 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + E +++G+ + + ++A + +D G + Sbjct: 776 LQSFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKP 826 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 L ++ T + + L + + A+ L+ L + Sbjct: 827 FTHTHLPKLRLIETDADEPPLPAWVPVSDLANSLTQNDAARIQMLAEEEYRRLLYVAMTR 886 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + + T + + + ++ G + ++ R Sbjct: 887 AADRLVVCGYRGVRVNND--TWHMMISTALSEGHPHVEAATFSGPDGEWPGIRWRVPRVE 944 Query: 740 DWTRKLDYTT-----KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--VYARRILK 792 ++D + + +P PP PR S S ++++ A + Sbjct: 945 RRFERIDRSEAHDSQEALPEGLSRPLPPQAELPRPLSPSGAGTIVDEDEGSLFVASPLFG 1004 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 ++G L H ++ L + + ++ L P Sbjct: 1005 EKERSDHS-----LEKGRLIHRMLQALPDIPPVERPDAASRYAERAAR-------LWPEA 1052 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKS 910 R ++ E + + + +E ++G DR+ +L Sbjct: 1053 ---ERRRLVDSVVKLMDEEGLQPVLGAEARPEVSIMGTLTLEDRRYAVSGRIDRLAVLAD 1109 Query: 911 GFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 + I DYKT P QL++ L Sbjct: 1110 -RIVILDYKTNRVPPSTEEAIPFAHKAQLAIYREILA 1145 >gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] Length = 1219 Score = 121 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 81/699 (11%), Positives = 185/699 (26%), Gaps = 67/699 (9%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI-----LPIIKSLGDVVE---------EKFTA 91 V T++A EL + LP + + + + Sbjct: 100 HVLGLTFTRKAANELGQRIRGRLETLARSGFREQLPADDPRHEALRNISPAVSTYDSYAG 159 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK------------DLYPESPLSLP 139 +++ Y L PV R++ A +I R L D + D + Sbjct: 160 NIVGEYGLLAPVEPSGRIISDAEKWMITRQLLLDHDREMQTSRSMVTVIDFIHRLSDEMD 219 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 A + +ID I+ E + K D L KYW ERL Sbjct: 220 NHLAELKDVRGETEALIDTIQQVEHGVGKPLSKAAYKLRDANQERLDLLPWVKKYW-ERL 278 Query: 200 VELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 EL+ + + +EH + +++ + A L+ ++ Sbjct: 279 QELDVRTFGQQMTLAAKLASEHAIVGQSQRERFRVVMLDEYQDTSHAQRVLLRSLFGDGQ 338 Query: 255 G--AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V D + T + ++ + P + + Sbjct: 339 DDELAVTAVGDPMQAIYGFRGATSSNLGNFETDFPFRGEPAQKFELTTSWRNPASVLELA 398 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI-EADNEREEA 371 S + V + + ++ + E+ +R+EA Sbjct: 399 NVVSSRTLGENRTVSELKPRAGAEDGEIQVAFFDEEDQELEWLTDQLQQRWESFKKRKEA 458 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 +++ + +A++ A + L G+ ++++ G L + + Sbjct: 459 AAVSGE-----KVDPFSAAVLVRKNKEALPIFELLRAKGVPVELTGGAGLLDIPEVADVY 513 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG------------- 478 + L A+ D A+ L+ P G + + + +G Sbjct: 514 ATLRALVDPEDDPAMLRLLTGPRFNLGARDLQILARRAQQLQRRAKGDTDPGEVNQDTTS 573 Query: 479 -----NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD------HI 527 + + + Q + + D + Sbjct: 574 AGGEDPWIHNPAYEELKSLESPLREQLLEAIPNPADATVGLADAIADFADAEEQGMSPRG 633 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDW---TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + I L + C + D + + V HR + Sbjct: 634 ARAIAELSRELGHLRRNCLTKPLPDLIADIEDMIGIRTEVLTRWHRNPDDSIGTSHLDEF 693 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + + G + ++++ G K+ T+ IL S+ L +D + Sbjct: 694 ADIVQSFSQLGGSNASILVDYLRAAHEHDSGLEPGEVEAKTDTVQILTVHRSKGLEWDIV 753 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + + L + + ++ + + Sbjct: 754 AVPYAHRKNFFDAETPGVRLEEWLHKAERIPSSLRGDAE 792 Score = 74.6 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 91/801 (11%), Positives = 205/801 (25%), Gaps = 85/801 (10%) Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPI 230 ++ + + W A++ G ++ A PI Sbjct: 425 EIQVAFFDEEDQELEWLTDQLQQRWESFKKRKEAAAVSGEKVDPFSAAVLVRKNKEALPI 484 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGL----DCHIPTAIWNTITEKSTNITSSNT 286 +P + + + P A V L D A+ +T N+ + + Sbjct: 485 FELLRAKGVPVELTGGAGLLDIPEVADVYATLRALVDPEDDPAMLRLLTGPRFNLGARDL 544 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 +L + + + ++ + + ++ + + + L Sbjct: 545 QI---LARRAQQLQRRAKGDTDPGEVNQDTTSAGGEDPWIHNPAYEELKSLESPLREQLL 601 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSA-------------LIT 393 IPN +A AD E ++ ++ E ++ LI Sbjct: 602 EAIPNPADATVGLADAIADFADAEEQGMSPRGARAIAELSRELGHLRRNCLTKPLPDLIA 661 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 ++ LTR+ N D S G D A Sbjct: 662 DIEDMIGIRTEVLTRWHRNPDDSIGT-------------------SHLDEFADIVQSFSQ 702 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 L L + ++ L + R + + + R + Sbjct: 703 LGGSNASILVDYLRAAHEHDSGLEPGEVEAKTDTVQILTVHRSKGLEWDIVAVPYAHRKN 762 Query: 514 EEDKELAV-LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 D E L + + + + + + + + ++ Sbjct: 763 FFDAETPGVRLEEWLHKAERIPSSLRGDAENEGQPGGYPLYDASHAEKSADLTKAADAFE 822 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 L +E ++ + I T + + + +T + + + + Sbjct: 823 VQLQAKEAQESERLFYVGITRTERVLLVSGSAYSSGVTAVDPSLNLVLLRNR------IT 876 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 + L L + A+ + T E+ I A D+ + Sbjct: 877 DSRAPLAGASVHTWSDLGRKPSKSDAARVEKGNATEIDHYFYPTPEQLI--AREDYALER 934 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQR-----LLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 ++ P + + +G D+ + TR+ D Sbjct: 935 RRAEADGEQASWPQPAPLASRPGAADGAGMVIDAIGAATTGDSATESAASQDMLTRQWDE 994 Query: 748 TTK--QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 T+ +++ + ++ + DP ARR + + Sbjct: 995 ETRLLIQEHQQRTLTAVEVPLDPMLTATQAVAMNQDPEQF-ARRRRRPIPMQPQPY---- 1049 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT FHN + + + + + E+ + ++ + Sbjct: 1050 AKRGTAFHNWVEQHYNQAMLFDEDEMPGASDATLQD----------------PQLEELKN 1093 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID---LLKSGFVDITDYKTGD 922 FL E + V + G G D + + + D+KTG Sbjct: 1094 KFLGSEWAQR---TPESVE--GSYLVNIGGFVFNGRMDAVFHEGEDPAAGWLVVDWKTGQ 1148 Query: 923 NPKKETAQKLIDPQLSLEAAA 943 P + + QL+ A Sbjct: 1149 MPTGRDMKNA-ELQLAAYRLA 1168 >gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus degradans 2-40] gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus degradans 2-40] Length = 1155 Score = 121 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 89/834 (10%), Positives = 207/834 (24%), Gaps = 104/834 (12%) Query: 181 WL---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG---------TKG 228 W L + + + E + + ++ +RA Sbjct: 371 WQTLDALIQLLPLCTAHLKLVFKESSQTDFTEITLSALRALGSESDTPTDLSLILDYRLN 430 Query: 229 PIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 ++I + L+ + G + D + + + Sbjct: 431 HVLIDEFQDTSSIQLNLLKLLTQEWQPDEGRTLFIVGDGMQSCYGFRNAN-VGIFLNIRD 489 Query: 286 TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 P ++ ++F + ++ + + + Sbjct: 490 NGLENVPMSAVNLCVNFRSNQAVVNWVNDVFKVAFPAQNDINRGAV-------SYQPSVP 542 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKL 404 + + + + EA + + L+ N + A++ +R ++ Sbjct: 543 FDTKELLSSHVECHGFVGDNGNEAEAQFVTSIIAQQLEVNPNQSIAILVRNRPHLTKIIT 602 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L I PL L ++ + +D++A ++ P E + Sbjct: 603 ALRSQNIAYQAVDIDPLLARPCVQDLLTITRVMQDQSDYLAWLAFLRAPWCGLSLSELTV 662 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + + ++ + ++R+ LA Sbjct: 663 LLG----------DHIYADTQPATHNVFATLHNEDLLSLLNTDTKNRVQRARMLLAQSFH 712 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + LV S+ T LQ + E W Sbjct: 713 QTQRKPLAALVESLWFALGGALIADNSNELDDARTYLQLLTKHEKGGRIRQW-------- 764 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS--STLFILGTLESRLLNFD 642 D + +P + + ++ +S+ L FD Sbjct: 765 ----------------------DAFYAGLQKLYARPTPVDANVQPVQLMTMHKSKGLEFD 802 Query: 643 TLILGGLNEGVWPKNTAKNPFLSR--VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 T+ + GL+ ++ + R L + ++ D A + Sbjct: 803 TVFVCGLSRPSKADDSPLLFWHERLNSYSEPQTLLSPLSPKIESEADPVYAFLKEEGKQS 862 Query: 701 RSLRENNIPTIAS-RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 R L + + +A R RL + + + ++ ++ P Sbjct: 863 RLLEDTRLLYVACTRAKARLYITAALTETPAAEIKPPANNTMLARIWDAIQEQIITHVDP 922 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-------------------PHFK 800 + + + S + + P A+ L + + Sbjct: 923 NVDMPSNDSVETGSNYVRFLT-PEAISGLHGLVDSALVTETEKQKTVFDNSDINIFEDRE 981 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 D GTL H I+ + ++ E M + + +P Sbjct: 982 VDNTAAAIGTLMHRILAVICDDGLDAWPLEKLAGMHKPWRAQLTANGVPAATAEQALQTI 1041 Query: 861 HKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 + L+ E +S + DR + + I D Sbjct: 1042 TQSVLKMLDDETARWLLSNSHPVSHCEWVVHYGSQPRD----AVIDRFFI-EGNTAWIVD 1096 Query: 918 YKTGDNPKKETAQKL-------IDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 YKT K ET ++ PQ+ +K +I +K +I+ Sbjct: 1097 YKTSTPNKGETLEQFVSAQQAEYQPQVDFYQKLVKEIVPPEITIKKALYFPFIQ 1150 >gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB [Clostridium acetobutylicum ATCC 824] gi|81529945|sp|Q97GV2|ADDB_CLOAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|15025266|gb|AAK80220.1|AE007727_4 ATP-dependent exonuclease synthesis protein AddB (superfamily I helicase) [Clostridium acetobutylicum ATCC 824] gi|325509679|gb|ADZ21315.1| ATP-dependent exonuclease synthesis protein AddB (superfamily I helicase) [Clostridium acetobutylicum EA 2018] Length = 1153 Score = 121 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ I P++ Y + L + F D G+ H +I + +N Sbjct: 774 KMSVSRLEKYIECPFSYYVQYGLNIKDRKIF--SLTPPDLGSFMHKVIDRFCETIKEENI 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875 + +I+D E +I + E+ + Sbjct: 832 DWNEVNDHICEEKIYKIVDQEIEGRGGSILNSSPRYSYIALRLKRILKRTVRIVAEQFKR 891 Query: 876 SSIEKIFVNIPAK-------MAI---ESIGIHLTGFADRIDLLK-SGF--VDITDYKTG- 921 S + + + + + + + + LTG DRID+++ G + I DYK+G Sbjct: 892 GSFKPVGYEVSFENGGSYPPITVGLNDGSEVVLTGRIDRIDMMEKDGSTYIRIVDYKSGN 951 Query: 922 DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K D QL L A L+ + + D + Y + D I K Sbjct: 952 KIFKLSDVYYGFDIQLLLYLNAILENENLDEEDKVLPGAILYFTMD-----DPIIKGKNN 1006 Query: 981 YSADELSEKSLKNLI 995 + +++ E+ +K+L Sbjct: 1007 LTDEQIREEIMKSLK 1021 >gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment [Rhodopseudomonas palustris CGA009] Length = 1161 Score = 121 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 99/856 (11%), Positives = 214/856 (25%), Gaps = 76/856 (8%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172 L + + + L L+L + +A +A I + E ++DL Sbjct: 317 LAERLQREGARLAGLLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 L + W ++ + + Sbjct: 376 ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G+ R + V + G N + + + + Sbjct: 424 TAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAEQRNELQRRFHGADKRFEKVAFNY 483 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + + + + + S + P + D+ ++ +++ Sbjct: 484 SFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIE 543 Query: 353 QKCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNL 398 A+ E E A + + R L+ + Sbjct: 544 GWQAPFDAVSETSPEVRLADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRRGSA 603 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V L R GI + + + L+ + L +L +A+ D +A+A ++K PL Sbjct: 604 FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVVLKSPLFGLD 663 Query: 459 FPEKYLSRAKN----ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + + L + + A + W Sbjct: 664 DDDLFKLAWQRKGSLRAALADHAAGDPRSAAVQHRLETYAARAQAETPFGFYAWLLGGDG 723 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 D A +L + L + S + S + Sbjct: 724 ADSGRARILRRLGPEANDALDEFLELALSFEQKRAPS------------------LQGFM 765 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 W E + + + + + ++ + T P + L L Sbjct: 766 AWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGG 825 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + + ++ G A +P + +S + +T ++Y M Sbjct: 826 NAAPGSVAAMVWAG--------RKADDPHIVEQARSAMIEETEDEYRRL--LYVAMTRAA 875 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTK 750 LI + N W + + Y +D T Sbjct: 876 DRLIVGGCMPGNRNEVRPHSWYDLISRGLESSGLVMQPVPPDGVIKRYCRPEDVIDETGA 935 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 P + R + + P +L RGT Sbjct: 936 AVPSHEAVATPLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGT 995 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L H ++ L + + + E++ ++ + + F Sbjct: 996 LVHRLLQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARFAAVF--- 1052 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + V I ++ + ++G DR+ + ++ V I DYKT P + A+ Sbjct: 1053 -----GPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAE 1106 Query: 931 KLID--PQLSLEAAAL 944 QL+ A L Sbjct: 1107 APRSYVRQLARYRAVL 1122 >gi|240113508|ref|ZP_04727998.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae MS11] gi|268599576|ref|ZP_06133743.1| exodeoxyribonuclease V [Neisseria gonorrhoeae MS11] gi|268583707|gb|EEZ48383.1| exodeoxyribonuclease V [Neisseria gonorrhoeae MS11] Length = 1069 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 104/875 (11%), Positives = 212/875 (24%), Gaps = 80/875 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVDRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY-- 738 E R L + R+ + +S L L+ N ++ Q + Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 739 -------------------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 D+ L T + P +P Sbjct: 725 QHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPV-ENAEPVAEIGQD 783 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEIN 832 E + +P V+ ++ L + I I+ R + Sbjct: 784 EFIRFWRNPVKVWLQQQLAWSEPHIGEAWEPAEPFDPQHADQIAETYIEARREG--QDFA 841 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +I + +W+ F + Sbjct: 842 QTAARIGAESL---LPSGELGRLWQQDFQTAAKQI 873 >gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3] Length = 1151 Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats. Identities = 85/822 (10%), Positives = 198/822 (24%), Gaps = 116/822 (14%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIP 240 I K + + + + ++ + I++ + + P Sbjct: 346 DIYLKIYADLKKANSFLDFDDLIERTLNLLQHKDASQWVQYKLDRGIDHILLDEAQDTNP 405 Query: 241 ATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH- 291 +++ +A N V D + ++ Sbjct: 406 KQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVPENFAENGRMFQKKAQQ 465 Query: 292 ---------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-N 341 YS D L + N + + D+ Sbjct: 466 IEQKFEKIQLNYSFRSTADILKSVDLVFEIPENYKGLSAEHVKTVHEPIRTHSPGDVIIW 525 Query: 342 TDILENKIPNIQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDENKKKSA 390 I + S V + R E A +IA L+ L Sbjct: 526 DAISQKTNELPDDWLSTVDHLNTPQIRLAEKIAETIANWLKNGEILSAKKRLLRAGDIMV 585 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 L+ + L + + + + L+ + L +L + + D +++A ++ Sbjct: 586 LVRKRDQFVPALSRALKLRHVPVAGADRLQLTAHISVRDLMALARFVLQPQDDLSLACVL 645 Query: 451 KHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 K PL E Y A+ +L + + + + + + V + Sbjct: 646 KSPLFALSENELYQLAAQRTGSLWESLWTHASSHTSFKTIFDRL-NTYRSLVDKMPVFEF 704 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 S + DK +L + L + + + L+ + ++E Sbjct: 705 YSYILNNDKGRQKILARLGTEANEVLDAFMDHTLAIQKTG-----LPGLQAFLEILSINE 759 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 L + + + ++ + +D Sbjct: 760 PEIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD--------------------- 793 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 G+ + L + ++ L+ + Sbjct: 794 --PGSAIWHPQYAPYFLKFSLGDKQAFIWRPNAQHHTKHFDKLLSRLKERAEEEYKRLLY 851 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 + + +L+ +K + W + + Sbjct: 852 VGMTRAEDRLIIC---GYSNQKETPNTWLQLVKKALKPHAVPIKGPAEDIAAWRYCITSS 908 Query: 749 -------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA--------------VYA 787 + P P + + S + + + A Sbjct: 909 CSTPTYKEMPCETHQAFPPLPAFFHDKMPTESTLSKPLRPSVADIIDTKTKFSNNKHFSL 968 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 +L + G H ++ L K + SH+ K Sbjct: 969 SPVLGEKNTKRTF----SIEYGNFIHQLLQHLPDLPPIKR-HDYAQFYLNTKASHWHKSQ 1023 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRI 905 + IW + L++ + I + + I ++G DR+ Sbjct: 1024 RENALHHIW---------TILDNPQLIPLFSSLSHAEVALIGIVKINGKEQMVSGQIDRL 1074 Query: 906 DLLKSGFVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKA 946 + + V D+KTG PK + + Q++L L+A Sbjct: 1075 CITHN-SVFFADFKTGLPPKNDTDIAQRHLLQMALYQKLLQA 1115 >gi|161870566|ref|YP_001599738.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis 053442] gi|161596119|gb|ABX73779.1| exodeoxyribonuclease V gamma subunit [Neisseria meningitidis 053442] Length = 1028 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 97/844 (11%), Positives = 215/844 (25%), Gaps = 57/844 (6%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 + L + G + + SL + K L+ P + L L Sbjct: 1 MRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRLLDL 57 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + +D+ L + LA LADI D +W D Sbjct: 58 FRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRR 117 Query: 176 KYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 W R ++ S + A + Sbjct: 118 LGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFV 166 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G + P +L+ ++ H + + W + E + + T Sbjct: 167 FGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDLTQA 222 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + L L D + E + L +D++N + + ++ Sbjct: 223 GHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENVGSV 282 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-- 406 + ++ A + E + L L E+ A++T + Sbjct: 283 NTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPHIESYTPFIEAVFG 342 Query: 407 ----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFG 458 + +S L+ L + + + + L++ Sbjct: 343 QAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLT 402 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + L A V + D + +P + + ++ Sbjct: 403 EDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQDVSA 462 Query: 519 LAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + L T +I +W L+ + E ++ Sbjct: 463 WYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQKSVQ 522 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E +++ + + I I R +D E+ + + Sbjct: 523 NLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSMVPM 578 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 R L F + L GLN+G +P+NT F + E R Sbjct: 579 RSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALISARE 636 Query: 697 -LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 L + R+ + S L L+ ++ Q +++ Sbjct: 637 ILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIEQHPLQ---AFSRR 693 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 Y + RT + + Q P + + + + + +D + + Sbjct: 694 YFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQD----EFIRFWR 749 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 N + +++++ + P + + + E + F + + Sbjct: 750 NPVKVWLQQQLAWSEP----HIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAAR 805 Query: 874 IQSS 877 I + Sbjct: 806 IGAE 809 >gi|256843262|ref|ZP_05548750.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus 125-2-CHN] gi|256614682|gb|EEU19883.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus 125-2-CHN] Length = 1159 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + LA +I +++L ++ + Sbjct: 71 SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TILENV 117 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L L I + +++ + L+I + + + Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S + + + + + I+ Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + T + + Q ++ +L L ++ + + Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + L +T V L++AD+ EA +A + + Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + ++ + L + I + ++ SL N Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++K L + E + LE L N + + Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + V + + I + L+ + Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + E+ L L + + E+ +++ Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + + + + + G P+ FL+ + L Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620 Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724 L+ +++ + +A + + + +N S + QRL G Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680 Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760 F +L ++ Q L L T +Q K Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740 Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + S S+++ + Y + LKL F+ + Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852 D G FH L+KK ++T M + + + E Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858 Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897 + K++H++ ++ + + + + + I+ + + Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916 Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948 L G DR+DL K + + DYK+ I Q+ L Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976 Query: 949 -FSQIDCRKVANLFY 962 F+ D + FY Sbjct: 977 FFAGKDRLSLLGAFY 991 >gi|240116139|ref|ZP_04730201.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID18] gi|268601806|ref|ZP_06135973.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID18] gi|268585937|gb|EEZ50613.1| exodeoxyribonuclease V [Neisseria gonorrhoeae PID18] Length = 1068 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGLDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + +S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|295693035|ref|YP_003601645.1| ATP-dependent helicase/nuclease subunit b [Lactobacillus crispatus ST1] gi|295031141|emb|CBL50620.1| ATP-dependent helicase/nuclease subunit B [Lactobacillus crispatus ST1] Length = 1159 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + LA +I +++L ++ + Sbjct: 71 SFSRLAWFFLKDAEQELPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L L I + +++ + L+I + + + Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S + + + + + I+ Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + T + + Q ++ +L FL ++ D N Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRLTLFLQERKMDYVTATFPLNSQPN 280 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 +++ + V L++AD+ EA +A + + Sbjct: 281 GREILNSLWTETI---------------PKVDELKQVQLVKADSRYAEAYFVARTIYQQV 325 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + ++ + L + I + ++ SL N Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++K L + E + LE L N + + Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + V + + I + L+ + Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + E+ L L + + E+ +++ Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + + + + + G P+ FL+ + L Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATASNLPQIQKMPGFLTTENLNQLQNSF 620 Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724 L+ +++ + +A + + + +N S + QRL G Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680 Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760 F +L ++ Q L L T +Q K Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740 Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + S S+++ + Y + LKL F+ + Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852 D G FH L+KK ++T M + + + E Sbjct: 799 DIIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858 Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPA---------KMAIESIG---- 895 + K++H++ ++ + + + + + + I Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLEVPDIPGQHK 916 Query: 896 IHLTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948 + L G DR+DL K+ + + DYK+ I Q+ L Sbjct: 917 VDLRGKMDRVDLANFNDKNQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976 Query: 949 -FSQIDCRKVANLFY 962 F+ + + FY Sbjct: 977 FFAGKNRLSLLGAFY 991 >gi|260662572|ref|ZP_05863467.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum 28-3-CHN] gi|260553263|gb|EEX26206.1| ATP-dependent nuclease subunit B [Lactobacillus fermentum 28-3-CHN] Length = 1245 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 120/1074 (11%), Positives = 273/1074 (25%), Gaps = 197/1074 (18%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + P +SN+ + +A++I + + PD+ L + Sbjct: 74 SFSRLGWFLCKDDPDYQKPRLSNVGMAMVVAKIIRELKAESPDL---------LKMFRGE 124 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLH----------ALKNEKYGMWWLLAADF---LK 189 + + + ++ + DL AL ++ G + F + Sbjct: 125 SERQGFVTAVTKQLVELQNANIQPADLAPDQETGIIKRALASQTGGGRASQSTVFTDKMT 184 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARLMST 248 + + + + + A++ E + + + G ++ Sbjct: 185 VLYEIYRRFEAAVTTHVTAPDRSAMLLNHLE-AADLSTTHVYLDRFAGEFSAQEQLIVDA 243 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + V LD + Y AK L Sbjct: 244 LIQRAADTTVSLILDRDY---------------RGREMPSQNNLYYRSAKQYQDLLNLAT 288 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + + S + D + V A Sbjct: 289 QQVGVDVLDPIVLNQPNQRRVSDALVGVEEWMEADARFALPDRLPAPTDQVGFFTAPTRV 348 Query: 369 EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 E +A +R + + ++T + + + +R I + P++T+ Sbjct: 349 AELNRVATKIRQLVATGQYRYRDFLVVTRHLDGYQTMLEPIFSRHQIPVFNDNQRPMATS 408 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA------------KFGFPEKYLSRAKNALE 472 ++ +L + + L+K L + A E Sbjct: 409 PLATFTAALFKVLKDYYQEADVMELLKTGLLVPETPEELQQEGRAKRNPNTFMTAVYRTE 468 Query: 473 LVALRGNKNSYDIMDLKSLVL----DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 L+ K D + L K +W +++ A+ + Sbjct: 469 NYCLKFGKGGRSWFDERPWRLEGEQPESDALKRQNAQINWVKNYIKDELAPALADLQTAT 528 Query: 529 QCITPLVTYKTNKNSTCGNLSISDW------------TKLTVTCLQNVCLDEHRKLPNLW 576 + + W + Q + L Sbjct: 529 TGRELATKFYQFLLDQGVRHQLYSWAHQAQESGQLTQLRDVQQIWQTFGTLLDEYVTILG 588 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDI---ITRLIDGETVKPKIEKSSTLFILGT 633 + NA + I + +++ E+ + + LFI+G Sbjct: 589 DQVAPTEQPGQLVAEFADLMNAGFNAGRYAQIPSTLDQVLVSESGMIQDNQRKVLFIMGA 648 Query: 634 LESRLLNFDTLILG-----------GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI- 681 + + GLN+ + + + + + L++ + + + Sbjct: 649 TDDVMPEVKASEGLLSDPDRELLKRGLNDDQFLPISGTDQINNEPFLNYLSMLSVTERLY 708 Query: 682 --------------------GQAAH--------------------------DFEMANGTR 695 G A H D Sbjct: 709 MSAPLMSSDDSELTLSPYLKGLARHFNQWDDQNNVPTTDLPDRPNPRASEDDVWSFVAAP 768 Query: 696 HLI---YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + R + R + T + L R D + Sbjct: 769 AVTMGNLIEVERLSKDTGRKLTSAWRDVARALTRHDEGLTGRLNDIRDGQYAKNEAVPLQ 828 Query: 753 HYKRPKP----FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + T S S++++ +PY + R L L + D++ Sbjct: 829 PELAARLYTTNRQGQVTNQLTASISQLEKFYQNPYDYFLRYGLHLKKRDELEVSSDKS-- 886 Query: 809 GTLFHNIITELIKKRINKNTPEINHLM--------KQIIDSHFEKE-NLPPHIDIIW--- 856 GTL H+ + ++ I++ ++ L+ ++ID FE+ N + + Sbjct: 887 GTLNHDALAFFVQSVIDEPDLQLADLVKEEHQGRQAELIDQAFEQAMNQQEELRELAANN 946 Query: 857 ------RHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAK----------MAIESIGIHL 898 + ++ + + + Q+ + + V + ++ L Sbjct: 947 SRVNLQLQVAKQLITTMAKTLCLQATQTDAQPVAVEKAFGQADWTGESQAAELPALTFDL 1006 Query: 899 T-------------GFADRIDLLKSGF---VDITDYKT-GDNPKKETAQKLIDPQLSLEA 941 T G DR+D LK G + DYK+ A Q+ Sbjct: 1007 TGAGLGEGAKVSLWGRIDRLDELKLGEQTYQLVVDYKSYNKAFDLVDAYAGQALQMLAYL 1066 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 AL+ + ++ Y+RL + K+ +A+EL E + + Sbjct: 1067 NALQ----AANPGEQLLGSLYLRL-----YVPTVDAGKEGTAEELKEHLYQGIT 1111 >gi|240014618|ref|ZP_04721531.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae DGI18] gi|240121140|ref|ZP_04734102.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae PID24-1] Length = 1068 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + +S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1079 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 96/987 (9%), Positives = 245/987 (24%), Gaps = 169/987 (17%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F L+ + L + R+L A + + + + +P + Sbjct: 129 YHAFAGTLIAEHGLRLGLEPDVRVLADATRYQLAGRVVRRSAGPIR-YASHHVPTLVNSL 187 Query: 146 IWLAKNLADII---------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + L LAD + D +E ++ +K L + L++ + + Sbjct: 188 LSLDGELADHLLRADEIRDHDEAVRQEVAAAPKQTVEVKKLAETALKRGEILQLVEE-YQ 246 Query: 197 ERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E R + + + +++ + + R+++ + Sbjct: 247 AYKAERGVVDFADQMALGARLAEQCPEVPAIERSRYKVVLLDEYQDTSVSQRRMLTALFA 306 Query: 252 HPN-----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 P+ G V D W + + + + + L Sbjct: 307 GPDPEHGRGHPVTAVGDPCQAIYGWRGASVANLDEFPEHFRNADGTPARRYVL------- 359 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEAD 365 + R + +++ + + + + Sbjct: 360 ------------SVNRRCGSRILAAANEHATELYEQHPGVIPLEAPDGAPEGAITVGLFE 407 Query: 366 NEREEAISIAIALRMSLDENKK---KSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 +E IA ++ + + ++ V L + +++ L Sbjct: 408 TRSQEIEWIADSIVAAHKTPNRRWKDIGILMRTNVDLSAVHEALIARKVPVEVVGLGGLL 467 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + + L A+ L A+ ++ P + G + L ++ Sbjct: 468 ALPEVVDVVATLQAVNDLTANAAMLRILTGPRYRIGHRDLALLANRSRALADGGDRPAAD 527 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + L + V +T+ + + ++ L T Sbjct: 528 DLVAALDAAVAGMDSTEVISLA--EAVDDPGPAGWGYSPEALER----FQELSTELRELR 581 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + G + ++ T +V L + + + T S + Sbjct: 582 AHAGEPLLDLVRRVISTIGLDVELTATPDHVDSGRRDHLAAFLDAVGNFVSTESDGSLDG 641 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + ++ ++ +L T S+ L + + + L V+P + ++ Sbjct: 642 LLAYLAAEEEYAAGLDLAVPSEADSVKLLTTHRSKGLEWPVVFVPTLVNKVFPSDRGRDK 701 Query: 663 F------LSRVMQSDLNLKTAEKYI------------------GQAAHDFEMANGTRHLI 698 + L ++ D + + + + + ++ Sbjct: 702 WTTNAKVLPWPLRGDADTLPDFHDLSNAGLKAFSDECKQVNSLEERRLGYVAFTRAKEVL 761 Query: 699 Y---TRSLRENNIPTIASRWLQRLLVLGG----------------TDFFDNLKKRGQCYL 739 P S +L+ L G + + + Sbjct: 762 IATGHWWGPTQKRPRGPSAYLEMLKKHAGDRVIAWAPQPELSEENPELAEQTQAAWPAPY 821 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQ--------------------------------- 766 D ++ + P Sbjct: 822 DAEAYRRRLEGAALVQQARAEGPSAEAEESLLLDEQATVARWDSELERLLSEARESRSRK 881 Query: 767 ------PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 PRT S +++ +L DP + A + + + GT FH + Sbjct: 882 AYDVELPRTLSATQVMRLAKDPDGL-ATELARPMPRKPNR----AARFGTRFHAWVESYF 936 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 ++ + ++ E + D+ ++ Sbjct: 937 GQQFLLDPDDLPGA---------ADEGIVDDTDLTELMDAFRVGP---------YGEKAP 978 Query: 881 IFVNIPAKMAIESIGIHLTGFADRI--DLLKSGF--VDITDYKTGDNPKKETAQKLIDPQ 936 + P ++I + G D + + G D+ D+KT + + Q Sbjct: 979 YEIEAPFALSIGGR--VVRGRIDAVYQVVRPDGSRGYDVVDWKTSRSETADP------LQ 1030 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYI 963 L++ A I +V FY Sbjct: 1031 LAIYRVAWAE--LLGIPLTQVGAAFYY 1055 >gi|255068462|ref|ZP_05320317.1| exodeoxyribonuclease V, gamma subunit [Neisseria sicca ATCC 29256] gi|255047304|gb|EET42768.1| exodeoxyribonuclease V, gamma subunit [Neisseria sicca ATCC 29256] Length = 1068 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 113/902 (12%), Positives = 237/902 (26%), Gaps = 92/902 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 LA+ I V ++ + L G + + SL + + L+ P Sbjct: 29 ALAAEQIVVQSQGMRRYLSVYLARELGVAANLQ---FSLPAGLTWQLMQKLIPDIPALSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S L L R + +++ L + LA LADI D Sbjct: 86 FSPEVMRWRLLDLFRSERFQTTSEFENVRSILQSYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 +W D L L ++ W + W R ++ S + Sbjct: 146 RPQWIDAWQEGKLLGLGEDEV---WQA---------QLW--RYLDDGNQSAPHRVALWEK 191 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + G + P +L+ ++ H + + + + Sbjct: 192 LLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQYWGNVIEAA-Q 250 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV--SNEMYGRSMVISKSFLPP 334 ++ + + HP LL L + D E V + L Sbjct: 251 LLKGGDEADLSQTGHP------LLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHC 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390 +D++N + + ++ A + E + L L E+ A Sbjct: 305 LQNDIQNLRMPSEHSRADLLGDGSIRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIA 364 Query: 391 LITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 ++T + + + +S L L+ + + Sbjct: 365 VLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKLSRRQSLLYALEQTLDLLESRFEVD 424 Query: 445 AIATLVKHPLA----KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + L++ L + L A V + D + Sbjct: 425 KVLPLLESGLVLRRFGLTADDLPLLHDTVAELNVHWGLDGTMRGAADNLFTWQQALERIV 484 Query: 501 NNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 +P S L + + +D + + T S +WT+ Sbjct: 485 LGWMLPDDGSPLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPASAEEWTERCR 544 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 +Q++ L + L ++ + L+ + G I I R + E+ Sbjct: 545 DLVQSLFLPDADDQYAL--QQFEQALAKWQEETALAGFSGTLPQHTVIRHIRRFLGSES- 601 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + R L F + L GLN+G +P+NT F + Sbjct: 602 -QAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPQKGDRARR 660 Query: 679 KYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 E R L + R N+ S + L+ K Sbjct: 661 DDDRY--LFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAAMTGRRSKGLA 718 Query: 736 QCYLDW----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 + +++ TR+ ++ +PF + T + Sbjct: 719 EHWVEQHPLQPFSHRYFIADNISDDLFSTRQDYAEALNRPREQARPFFSEALEENTPVPT 778 Query: 774 EIK----QLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + +P + ++ L + + + L +R N++ Sbjct: 779 VWQDDFIRFWKNPVKAWLQQTLGWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQD 838 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E + E + +W+ F + ++ + +P Sbjct: 839 FQETAVRLDA------ESLLPAGELGKLWQQNFQAAAKR-IDGALLQSPKLPPFAYEVPF 891 Query: 888 KM 889 Sbjct: 892 DG 893 >gi|218509238|ref|ZP_03507116.1| hypothetical protein RetlB5_17865 [Rhizobium etli Brasil 5] Length = 149 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 98/144 (68%), Gaps = 2/144 (1%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P + TI PF + + L +G L F++D +PL LA VTIY+PT+RA++ LRSEF Sbjct: 6 QPRILTIPAGLPFLKTLATTLCDGRLTPLFQHDVDDPLSLARVTIYLPTRRAVRVLRSEF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 +++ G +S ILP+I+ LG+ ++ F L + +L P+SN RLLELARLIL WRNK Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEALPATIDLAQPLSNTARLLELARLILAWRNK 125 Query: 123 LPDIIKDLYPESPLSLPISPANAI 146 LP+I++ ++ +SPL P SPA+AI Sbjct: 126 LPEIVRHIHSDSPLVAPASPADAI 149 >gi|254494158|ref|ZP_05107329.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 1291] gi|226513198|gb|EEH62543.1| exodeoxyribonuclease V [Neisseria gonorrhoeae 1291] Length = 1068 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 101/876 (11%), Positives = 222/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E +++ + + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLENEWVKWQAETELAQFSGQLP--QQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + +S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1073 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 120/1068 (11%), Positives = 297/1068 (27%), Gaps = 143/1068 (13%) Query: 50 YVPTKRAIQELRSEFIEITG---------------KKSTILPIIKSLGDVVEEKFTADLL 94 T++A E++ + + S I I ++ E+ D Sbjct: 61 ITFTRKAAAEMKERIRKEIESLCKSDKDGKKWTVFRDSLIFANIDTIHGFCEKMIR-DNF 119 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDII------KDLYPESPLSLPISPANAIWL 148 + +++P S + E++ + + + K + + P Sbjct: 120 VETSVDPTFSIMDE-AEVSTAVKKMVEIVTGEVINDEKNKYMLATALKKYPSKIFTGKMF 178 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVELNASS 206 + + ++ ED+ LA L+ + + N Sbjct: 179 QSEVISLYFRMKEAGLSVEDIKLSYESDESTKAMENLALIILEKIEENYKAFKSSKNLLD 238 Query: 207 PVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTV----ANHPNGAIV 258 + ++ + I++ + ++ + P+G + Sbjct: 239 FNDLETIALKLLSNDIIRNDYFERYRYILVDEFQDTNRLQKEIILKLTEKDGKIPDGKLF 298 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY-----------------SLAKLLD 301 + D + + + L++ Sbjct: 299 I-VGDIKQSIYGFRGTDFRIFDEFCRKIEADGKVLNLSNCYRSTKNIISTINDVFKNLIE 357 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + + E+ + ++ ++ + + + Sbjct: 358 PYEELKYQSFADEGPKVELITYKKDDIVNEKNERYKKIKQLLKDDDNKGKLNELLMEDGA 417 Query: 362 IEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 + + + IA + + E K A++ R+ + ++ L GI I GI Sbjct: 418 LANSRKDFQGKIIAGRILKLVGEGFEYKDIAVLLRSRSSLKSIEGALADCGIPYCIIGGI 477 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL--R 477 + S+ F +D +A+ T ++ P+ F + + + + Sbjct: 478 GFWDKREIIDIISVYKLAFDTSDEIALLTALRSPIFGFSDDDLFAFMNIYNGQCIDDPLE 537 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 KN V+ R + E K + I + L++ Sbjct: 538 ALKNFSPKCGDDKWVIKRACNILDKISKMRGVYNPYEIFKMIL-----KITEYKKLLISL 592 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + K D L L + + L ++ Sbjct: 593 PNGYQKFRNVEKLESIIKSFEEKRILDSKDLIEYLDALKESSSLDSEAFLDTEESNAVKI 652 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + ++ + ++ +I + + + + L + G+N+ Sbjct: 653 MTIHSSKGLEFDAVIIPDM-----DKATDGISVRKAPLFMLSEEGYIFCIGVNDDGDLDK 707 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR------SLRENNIPTI 711 + + + + EK ++ F +A+ ++ + + + Sbjct: 708 SENSLYKEEYDRY------LEKENMESRRLFYVASTRAKKFLAFIGQMKDNIDDIDEDSK 761 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + ++++LL L+ + LD+ ++L+ + + PL Sbjct: 762 LNSFMKQLLFAIKDGCSNIDYIDGTCLQSYAKNKLDYVKELNEDADKIKFGGLIDKMPLN 821 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLD----FIP--------HFKKDPDRTDRGTLF 812 + S + + P Y + I+ L + +RGT+ Sbjct: 822 VKGN-VSVTAYIDYLTCPMFYYYKYIVSLTDEYVELDGNSDDIYSESDDKISALERGTIV 880 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H I+ L + + ++++L +II + + + KIS L+ + Sbjct: 881 HKILETL----DDDDYIDVSNLNDEIIKRYIDNYYMLRDKHR------KKISGRLLKRLK 930 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK-SGFV--DITDYKTGDNPKKET- 928 + I+ I+L G DRID+ + G + I DYKT + Sbjct: 931 -----------EYKFRAPIDD-NINLNGVIDRIDIYENDGNIESYIFDYKTNKIDSDDDL 978 Query: 929 --AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 + PQ+ + + L+ I LK F + +L Sbjct: 979 EKIARHYTPQIHVYSHVLRR--LKTISGFSPT------LKGAFLYFLDVGKYVEVDISDL 1030 Query: 987 SEKSLKNLIEIVTL--LQNGEQP---FISHLRLSEKSNIQSEYDHLAR 1029 ++ L +I+ G + ++S R + Y+ + R Sbjct: 1031 Y--IMETLEKILKATPFLLGAKGIEEYVSRKR---EYCSMCLYNKICR 1073 >gi|293380926|ref|ZP_06626960.1| putative ATP-dependent nuclease subunit B [Lactobacillus crispatus 214-1] gi|290922501|gb|EFD99469.1| putative ATP-dependent nuclease subunit B [Lactobacillus crispatus 214-1] Length = 1159 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + LA +I +++L ++ + Sbjct: 71 SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L L I + +++ + L+I + + + Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S + + + + + I+ Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + T + + Q ++ +L L ++ + + Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + L +T V L++AD+ EA +A + + Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + ++ + L + I + ++ SL N Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++K L + E + LE L N + + Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + V + + I + L+ + Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + E+ L L + + E+ +++ Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + + + + + G P+ FL+ + L Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620 Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724 L+ +++ + +A + + + +N S + QRL G Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680 Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760 F +L ++ Q L L T +Q K Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740 Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + S S+++ + Y + LKL F+ + Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852 D G FH L+KK ++T M + + + E Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858 Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897 + K++H++ ++ + + + + + I+ + + Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916 Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948 L G DR+DL K + + DYK+ I Q+ L Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976 Query: 949 -FSQIDCRKVANLFY 962 F+ D + FY Sbjct: 977 FFAGKDRLSLLGAFY 991 >gi|227878666|ref|ZP_03996581.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus JV-V01] gi|256850381|ref|ZP_05555809.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus MV-1A-US] gi|262046471|ref|ZP_06019433.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus MV-3A-US] gi|312978153|ref|ZP_07789897.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus CTV-05] gi|227861730|gb|EEJ69334.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus JV-V01] gi|256712778|gb|EEU27771.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus MV-1A-US] gi|260573342|gb|EEX29900.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus MV-3A-US] gi|310894871|gb|EFQ43941.1| ATP-dependent exonuclease subunit B [Lactobacillus crispatus CTV-05] Length = 1159 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 102/975 (10%), Positives = 240/975 (24%), Gaps = 149/975 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L + + + LA +I +++L ++ + Sbjct: 71 SFSRLAWFFLKDAEQGLPNQLDDAASAMLLAHIIENKKDEL-------------TIFENV 117 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 L L I + +++ + L+I + + + Sbjct: 118 NVNSGLVNQLYQTILQVYDGNLDLDEISE---DNLDQETKNKLHDLRIIYDAFIKEIA-- 172 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 S + + + + + I+ Sbjct: 173 GKFSTKNEVQLQLNEILAKSKNLKQASFYFCDFSHFSLQETLTIKILMRKAKDVIL---- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + T + + Q ++ +L L ++ + + Sbjct: 229 -------AFKTRLGEINSSAEEGDYDYV-IQQTIKRL--TLFLQERKMDYVTATFPLNSQ 278 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + L +T V L++AD+ EA +A + + Sbjct: 279 SNGREILNSLWTETIPKV-------------DELKQVQLVKADSRYAEAYFVARTIYQQV 325 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + ++ + L + I + ++ SL N Sbjct: 326 ALSNYRYHDFLILAPNLKEYETYLTPILRQNQIPFFNDLQQEMKYHPLVVLIESLFNLHE 385 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++K L + E + LE L N + + Sbjct: 386 NPFQTQNMLAILKTHLLIPSWYKEEAEYIHDVDELENFVLAHGINHNLWK---KHFDNFV 442 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + V + + I + L+ + Sbjct: 443 NAEVIRLDKMDDEVAKIDRLRSYLVDKISTFFKIIEQEKDSQKALTIFFEFLTKNGIADR 502 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + E+ L L + + E+ +++ Sbjct: 503 LEKWRDEANEAGDLQQAQQ-PEQLWDLLMQLLQDYLAINPE-TFDLNEFFNMLISAFREA 560 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--- 673 + + + + + + G P+ FL+ + L Sbjct: 561 NFSQIPSTLDAVNLSEMGMVQTSGYKQVFIIGATANNLPQIQKMPGFLTTENLNQLQNSF 620 Query: 674 -----LKTAEKYIGQAAHD---FEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGG 724 L+ +++ + +A + + + +N S + QRL G Sbjct: 621 NSESYLEDSQQLNNLDQNYQFGLSLALAQDRVYVSYPVLNASNEELDPSIYYQRLKDYGA 680 Query: 725 TDFFD-NLKKRGQCYL-----------------------DWTRKLDYTTKQPHYKRPKPF 760 F +L ++ Q L L T +Q K Sbjct: 681 QQFVQHDLPEKMQDLLSFITNPDASLGYLTYMNSINSGLAVQELLKITQEQLPQKTKTVL 740 Query: 761 PPLEAQPRTY-----------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + S S+++ + Y + LKL F+ + Sbjct: 741 EASDFDNQPENIGQDLASQLYGQNLNSSVSQLETFYENSYEYFLNYGLKLRRR--FENEF 798 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEKENLPPH-----I 852 D G FH L+KK ++T M + + + E Sbjct: 799 DVIQAGNYFHETFDRLVKKLNKQHTDLADLSSIELEQMLNSVRNVMKDEGKYSQLMNDPF 858 Query: 853 DIIWRHLFH----KISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIH--------- 897 + K++H++ ++ + + + + + I+ + + Sbjct: 859 NQYLFKCLDHTTSKVAHNWRRSLKE--TPLRAKYSELSFGLGEKIKGLSLKVPDISGQHK 916 Query: 898 --LTGFADRIDL----LKSGFVD-ITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGS- 948 L G DR+DL K + + DYK+ I Q+ L Sbjct: 917 VDLRGKMDRVDLANFNDKDQVLAQVIDYKSSAKKFDLGMFYNGIALQMVSYLDVLTKNDQ 976 Query: 949 -FSQIDCRKVANLFY 962 F+ D + FY Sbjct: 977 FFAGKDRLSLLGAFY 991 >gi|325198813|gb|ADY94269.1| exodeoxyribonuclease V, gamma subunit [Neisseria meningitidis G2136] Length = 1033 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 106/865 (12%), Positives = 214/865 (24%), Gaps = 80/865 (9%) Query: 53 TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 ++ + L + G + + SL + K L+ P + L Sbjct: 3 SQGMRRYLNTCLARDLGVAANLS---FSLPAGLTWKLMKKLIPGIPELSPFAPEVMRWRL 59 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + +D+ L + LA LADI D +W D Sbjct: 60 LDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQ 119 Query: 173 KNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP 229 W W R ++ S + Sbjct: 120 GRRLGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLESLSSDKLPER 168 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 + G + P +L+ ++ H + + W + E + + Sbjct: 169 YFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMYWGNVIEAAQILKGGGDPDL 224 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 T + L L D + E + L +D++N D+ K Sbjct: 225 TQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGSRDTLLHALQTDIQNLDMPSEKA 284 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE 405 NI + ++ A + E + L L E+ A++T + Sbjct: 285 GNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEA 344 Query: 406 L------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLA 455 + + +S L+ L + + + + L++ Sbjct: 345 VFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRF 404 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + L A V + D + +P + + ++ Sbjct: 405 GLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAVERMILGWMLPEGGNPMWQD 464 Query: 516 DKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + L T +I +W L+ + E Sbjct: 465 VSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQK 524 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 ++ E +++ + + I I R +D E+ + Sbjct: 525 SVQNLENEWVKWQAETELAQFSRQLP--QQTVIRHIRRFLDSES--EAGFLRGGITFCSM 580 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 + R L F + L GLN+G +P+NT F + E Sbjct: 581 VPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLIAKHPAKGDRARRDDDRY--LFLEALIS 638 Query: 694 TRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY------------ 738 R L + R+ + S L L+ N ++ Q + Sbjct: 639 AREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMTGTNSRQLAQNWIEQHPLQAFSRR 698 Query: 739 ---------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 D+ L T + P +P E + +P Sbjct: 699 YFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPV-ENAEPVAEIGQDEFIRFWRNPV 757 Query: 784 AVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 V+ ++ L + I I+ R + + +I Sbjct: 758 KVWLQQQLAWSEPHIGEAWEPAEPFEPQHADQIAKTYIEARREGR--DFSQTAARIGAES 815 Query: 843 FEKENLPPHIDIIWRHLFHKISHSF 867 + +W+ F + Sbjct: 816 L---LPSGELGRLWQQDFQTAAKQI 837 >gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] Length = 1158 Score = 120 bits (300), Expect = 2e-24, Method: Composition-based stats. Identities = 86/829 (10%), Positives = 203/829 (24%), Gaps = 111/829 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234 A + K +T + + + I++ Sbjct: 340 AAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLDHILLDE 399 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNI----- 281 + + P +++ +A N + D + ++ Sbjct: 400 AQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFAENGRII 459 Query: 282 -----TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL-PPD 335 ++ YS D L + N + + ++ Sbjct: 460 QKKVQQTNQQFEKIQLHYSFRSTADVLKSVDIVFETPENYKGLSAENTKTVHEAIRVHSP 519 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--------- 386 + I + V ++ E A IA + L + + Sbjct: 520 GEVVIWDAISQETSEFPHDWHLSVDHLDTP-EVRLAEKIAETIANWLQKGEMLPAKGRLI 578 Query: 387 ---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 L+ + I + + + L+ + L +L + + D Sbjct: 579 RASDIMILVRKRDQFVSALSRAFKHRNIPVAGADRLQLTKHISIRDLMALARFVLQPQDD 638 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 +++A ++K PL E Y A +L + D + + Sbjct: 639 LSLACVLKSPLFALSEEELYQLAAHRTGSLWQSLFTHASSQASFKDAFEKLNHY-RALVD 697 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 V + + + DK +L + L + + L Sbjct: 698 KIPVFEFYNHILNNDKGRQKILSRLGSEANDVLDAFMDYTLTIQKTG-----LPGLQAFL 752 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + E + + ++A + +D Sbjct: 753 ETLSASEPEIKREFEQNN-----EEIRIMTVHAAKGLEAAIVFLVD-------------- 793 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 I + L L N F +++ + ++ Sbjct: 794 ----PGSAIWHPQHAPHLLKVPLNNAKWNGKQAFIWRPNEKFDTKLSKQAISHLKERAEE 849 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + ++ + S +L+ +K + W Sbjct: 850 EYRRLLYVGMTRAEDRLFICGYKGQKTQ---SHTWLQLVKKALEPHALAIKDSVEDIAAW 906 Query: 742 -----------------------TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + P PL+ + S +L Sbjct: 907 RFCITPPSSVSINPKVPCAECQTLPPLPAFFSHKVPEEPVLPKPLKPSVASLSIEADTEL 966 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + P + +L + G + H ++ L + K + + I Sbjct: 967 SSSPKQLTISPVLGATNTNRAF----SIEYGNIVHRLLQYLPDYPLQKRRDYARNYL-NI 1021 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 SH+ + + +W KI + + + S + V++ + I + Sbjct: 1022 KASHWYESQREDALRHVW-----KILDHV--YLKPLFSEHSRAEVSLMGIVKIRGKEHAI 1074 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 +G DR+ + ++ + D+KTG P + Q++L L+A Sbjct: 1075 SGQIDRLYITQN-SIIFADFKTGTPPENEAAIASHHWLQMALYRKLLQA 1122 >gi|311743792|ref|ZP_07717598.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272] gi|311312922|gb|EFQ82833.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272] Length = 1047 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 116/1047 (11%), Positives = 256/1047 (24%), Gaps = 148/1047 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL----RSEFIEITGKKSTILPII 78 A++ +V ++ ++P V T +A EL R+ P I Sbjct: 52 TAVMAARVVWLVGHERVDPE---RVLGLTFTAKAAAELAGRVRASLATALDMGDAGEPTI 108 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + F L+ + L + R+L AR + L + L Sbjct: 109 ST-----YHAFAGRLIAEHGLRLGLEPDLRVLTDARRHQLVVRVLRR-VDHPLQHVSTHL 162 Query: 139 PISPANAIWLAKNLADII---------DIIETEEKKWEDLHALKNEKYGMWWLLAADFLK 189 P + + L L++ + D E D + + L Sbjct: 163 PSVVGDVLALDGQLSEHLVTTEQLRLHDHAVVAEMAAADKPLKLHRDVAATAAKRIE-LS 221 Query: 190 IASKYWTERLVELNASSPVGYQI----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 + E E + G +++ + A L Sbjct: 222 GLVDRYRAAKAEAGVMDFSDQMAWGTELARLPEVSDDLGGRYDVVLLDEYQDTSVAQRDL 281 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 ++ + + D W + T + + Sbjct: 282 LAALFQGR----ITAVGDPAQGIYGWRGAATGNLEGFIEQFTPA--------------GV 323 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 +R L + + + S + + + AD Sbjct: 324 ERVRPFSLAVSRRCGHRIIDIAGHAARDFYASSDVVQPLRAAPDNPEGEVTVALHRTVAD 383 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 A ++ A R + ++ + + L + ++I L Sbjct: 384 EIAAVADAVREAGRRHDPPQWNEIGVLVRNGAENAEIVQALRAREVPVEIVGLTGLLAQP 443 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + ++L + + ++ L+ P + G + A L + D Sbjct: 444 EVLDVLAVLEVLDDMTANPSMLRLLAGPRWRIG-DRDLALLGRRARRLSESARTREDPDA 502 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 D+ +++ + S Q + + + Sbjct: 503 GDVDAVLAHELERATAGVDPTEVVSLAEAVADPGPAPYSPEARQRLGEIAQFLARLRRH- 561 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + + D V LQ + + + ++ ++ Sbjct: 562 AHEPLVDLVHRVVRDLQLDVELDVEGVGTDNLTQLHDAVARYAGDDPHASLGGLMAYLQA 621 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +D T +++++ +L +S+ L +D + + L +GV+P +++ + Sbjct: 622 ERDYADGLDVST----PSEANSVKVLTVHKSKGLEYDEVFVPFLADGVFPSGRSRDRWTG 677 Query: 666 ---------------------------RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 + + ++ + + A F A HL Sbjct: 678 VARALPVSLRGDGDSLADLTEFTTAGVARYKQESAQESMMEEVRLAYVAFTRARHRLHLS 737 Query: 699 YTRSLRENNIPTIASRWL---QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 R R P SR+L V G + + + + Sbjct: 738 GHRWGRTQKRPRGVSRFLADAHEWSVASGCEPEVWSPEPADDEPNPLGETVRHAWPHPVD 797 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-------- 807 +P L A+ R ++ P L L + + Sbjct: 798 GMQPRRELAAEVRRRMAADGPPPDVHPVHADLATELDLLLAEAERVADPVVEVTLPSALS 857 Query: 808 -------------------------------RGTLFHNIITELIKKRINKNTPEINHLMK 836 GT FH I + + + Sbjct: 858 ATQAMAWAADADAFARDLARPRPRRPSRAARFGTSFHAWIESTYLPNQQGLLLDPSD-LP 916 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 D+ + + E + E + + + + + Sbjct: 917 GRGDTDISDDADLAAMKA--------------AFEAGPYAGREPVSIEEGFTLHLGAQ-- 960 Query: 897 HLTGFADRID--LLKSGF--VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 L G D + L G ++ D+KT + QL++ A + Sbjct: 961 RLIGRIDAVFTTTLPDGTDGYEVVDWKTNRAATADP------LQLAVYRLAWAEKHDVPV 1014 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKK 979 D V Y+RL Q + D + + Sbjct: 1015 DRV-VGTFVYVRLDQVVRHDDLPGRPE 1040 >gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] Length = 1053 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 107/1036 (10%), Positives = 264/1036 (25%), Gaps = 129/1036 (12%) Query: 30 LVENFRYDPLNPLLLA-SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 L L + T +R + G + + I + E Sbjct: 48 LAARIGKILTETDALPHEILCLTYTDAGAVAMRKRLFDFIGPDAYRV-NIYTFHAFCNEV 106 Query: 89 FTADLLLSYNL-NPPVSNIQRLLELARLILIWRN--KLPDIIKDLYPESPLSLPISPANA 145 +L + P+S++ L L+ N L D+Y + P Sbjct: 107 IQENLDYFGKMNLEPLSDLDAALLFRELVDDLPNDHVLKRFTGDVYYDVP---------- 156 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNE------------------------------ 175 L + ++ E + E Sbjct: 157 -----RLKSLFSTMKREGWGVAMIQKAVEEYLTDIPFRDEFVYKRANAKAGIKIGDPKQK 211 Query: 176 KYGMWWLLAADFLKIA--SKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKG 228 L + + ++ I +++A E + Sbjct: 212 DIDAATEKMKSLLAAVSEYQNYDAKMKRDGKYDYDDMIIWVLKAFREDEEILRRYQERYQ 271 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 I++ + + L+ + + V D + K+ +++ Sbjct: 272 YILVDEFQDTSGSQNELLKFMLAYWETPNVFVVGDDDQSIFKFQGANMKNILDFAND--- 328 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILE 346 Y L + + ++S + + + + L + Sbjct: 329 -----YVATLNTVVLKHNYRSNQHILDISRVLIDNNNERLTKQLSLDKNLQAAHPRFKDL 383 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKL 404 P + E N +E + +A+ + + + + A+I + + + Sbjct: 384 VVEP---------TIQEYANPDQEVVDVAMQIEKLVSKGTEPGEIAVIYRNHSQVDELVH 434 Query: 405 ELTRFGINIDISAGIPLSTTLHSS----ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 L + I + I + IL L + + + H F P Sbjct: 435 FLDQKNIAVSTKRKINIIEEPFGEKIINILRYLAMELDSPYSGDELLFEIMH-YDFFNIP 493 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 +++A + K+ L+ H+ ++ + Sbjct: 494 PIEIAKASIKVSEDNFGTYKSGLSKTSLRR-------------HIAEMRTPTQTGLFDPV 540 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L + ++ + S T + + + + Sbjct: 541 PNL--EMKYLVSNVDYLLKAAVSLTLQQFFQQMIAKTG----ILKYIMQQPNKGWYMQIL 594 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + L + + A+ + ID++ + + I + + + S+ L Sbjct: 595 TSIFNFLKDESRKKPDISAADFVALIDLMKKNKISLELNQVIFTENGVNFMTAHGSKGLE 654 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699 F+ + L G ++ +W F + + + R L+ Sbjct: 655 FEHVFLIGCSKKIWDGKGRNMGFSYPDTLTQAPADDIAQKEESRRLFYVALTRARQCLMI 714 Query: 700 TRSLRE-NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + + ++ N AS+++ +L ++ + K K Sbjct: 715 SYAGKDKNGKDQEASQFIGEILAETHLQVKHPQVGEDAMLDFYSTQFSEADKPKVELIDK 774 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 + Q T S + + ++ P Y + ++++ G H + + Sbjct: 775 NYINQLLQGYTLSVTHLSNYLDCPLRFYFQNLIRVP-----SGKSPAATFGQAVHWALNK 829 Query: 819 LIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFH---KISHSFLEHEEKI 874 + + N + + N ++ +I + E ++ Sbjct: 830 AFRNLKDNNDEFPLTQEFMDHYRWYMRR-NRDSFTKEDYKLRLEYGERILPVYYEQNIEV 888 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQK 931 + K +E GI + G D+I+ V++ DYKTG K Sbjct: 889 WNKNAI--TEKAIK-NVEIEGIPIKGNLDKIEFNG-KQVNVVDYKTGKFKNARSKFDRPN 944 Query: 932 LIDP-------QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 DP Q + + D ++ + + Sbjct: 945 GGDPNGGDYWRQAVFYKILIDHDLTNDWDVIST-QFEFVEPISEGEYHKEKVVITPQDVQ 1003 Query: 985 ELSEKSLKNLIEIVTL 1000 ++ E+ +I+ Sbjct: 1004 QVGEQIKTVYQKILNH 1019 >gi|295696732|ref|YP_003589970.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM 2912] gi|295412334|gb|ADG06826.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM 2912] Length = 1052 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 116/994 (11%), Positives = 256/994 (25%), Gaps = 176/994 (17%) Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + P + + A +I + E E L E + Sbjct: 89 GPALDPLAWPGVRRKAARLIQRLREAEVPPEILEEAAEELPRREAGRVRWLAGLLRAVVE 148 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMK---GTKGPIIIAGSTGSIPATARLMSTVANHP 253 + + A+ E + +++ G + A R ++ + Sbjct: 149 AQAMRAGAADEAEMLGRAAALLGERPLPEWLPGVRRVVVYGFSRLSAAAVRFVAAIRGVE 208 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + LP ++ + S Q +LL ++ Sbjct: 209 AVEVCLPPVE------------------IPGVRSESGPLQRGGWRLLTRRG---FAMQPG 247 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 GNV + R + S +F P+ ++ V A Sbjct: 248 GNVLPQGGRRPVAASLAF------------------PDEASQWAGV-----------AGW 278 Query: 374 IAIALRMSLDENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPLSTTLHSSILTS 432 +A L L + ++ A++T L GI++ P + + S Sbjct: 279 VADRLAEGL--SPRRIAVVTDRPPTPDSALVRALADRGISLAEPVVRPGTAAPLIQYVFS 336 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL L A+ T+ A G P ++ + L + + Sbjct: 337 LLELAQGLWSRAALFTVASDVYAPDGRPRHWVLARRVDPRLERAGADGWMAGVRRALEAE 396 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 D + ++ E +++ + L + T ++ + + + Sbjct: 397 TDLLPGERR-------------ELEDVLIWLAQVRDRVAGMPETGSLSEWADALEGLLEE 443 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE----WIDI 608 + E L ++ + ET S + W Sbjct: 444 MEVERALRRRARKAGSEEWAGIRQDLEAYAVLRAMLREWRETDSWVGWPGRCSRGEWARW 503 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + ++G + + + + ++ + +L+ + ++ +NEG+WP + + Sbjct: 504 LREELEGRRLIVRPGQEDGIRVVSPETAWVLDLEAAVVPEVNEGIWPPPEREEGLAEVLY 563 Query: 669 ----QSDLNLKTAEKYIGQAAHDFEMANGTR--HLIYTRSLRENNIPTIASRWLQR---- 718 + Q + T + T E +P+ L R Sbjct: 564 DVLKLRGYEWPRPAELRAQHEENLLRLLATPGIQVALTYVEAEGKLPSRILEQLWRSGQC 623 Query: 719 --------LLVLGGTDFFDNLKKRGQC------YLDWTR--KLDYTTKQPHYKRPKPFPP 762 V G + ++ G + W LD P P Sbjct: 624 LPGGGQELESVAGLPQESGDPREAGPPFAHVALWRAWEERMALDRVDGHPFDGPVDDTGP 683 Query: 763 LEAQPRTY-----------------------------------------SFSEIKQLIND 781 L + R S S Sbjct: 684 LSGRWRRLAAKAMIEKLREGPEFSPWEGRLSSDFAQTEFGQRFSEDRVYSASMFNDYGTC 743 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN----------KNTPEI 831 P+ RR+ K++ ++ D + G L+H +++ L ++ + + Sbjct: 744 PFRFLLRRVWKIEVGRGAREPLDALEAGLLYHRVLSGLFREVRDLAESGDGNLWLDIDRA 803 Query: 832 NHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEE--KIQSSIEKIFVN 884 L+++ + + + R ++ ++ + S + + Sbjct: 804 LGLLERRWGEEVQALEERLGLKEFPTWSLQRERMRNRIWQWVAYDWSQRRGSGLRPRYFE 863 Query: 885 IPAKMA------------IESIGIHLTGFADRIDLLKSGFVDITDYKT---GDNPKKETA 929 I G+ G DRID G + DYK G K Sbjct: 864 WAFGGEDDSSDPASSPTPIAVEGLLFQGRVDRIDADAQGRFIVYDYKRTTGGGRHGKAAI 923 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRL-KQKFKIDCITNDKKKYSADELSE 988 K ID QL L ++ + + Y L + + + + + Sbjct: 924 AKGIDVQLPLYMEIVRQALYPD---GEPLGAAYYGLERPDRQKEGLWRKGADHGLGPRVG 980 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + ++ + + +R + Sbjct: 981 LGDEEWQALIDRALDYILEYHGRMRAGDYPVAPG 1014 >gi|254427543|ref|ZP_05041250.1| exodeoxyribonuclease V, gamma subunit [Alcanivorax sp. DG881] gi|196193712|gb|EDX88671.1| exodeoxyribonuclease V, gamma subunit [Alcanivorax sp. DG881] Length = 1134 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 92/859 (10%), Positives = 229/859 (26%), Gaps = 61/859 (7%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L + + + +PL P L + T V + Q L+ + + G + + + Sbjct: 18 LTELVADWLQREPLPP--LETETFLVQSNGMAQWLKLQLADALGISAGFQFQMPA----R 71 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 +L + P S + L RL + L + L+ + Sbjct: 72 FLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPALLNNEHFGPL-RHFLADDVDGRKR 130 Query: 146 IWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 LA+ LAD+ D + W + L ++ + + + + Sbjct: 131 HQLAERLADLFDAYQMYRADWLADWESSNDRLRKAQDRDTFDDFPASQLWQAHLWRALLT 190 Query: 198 RLVE--LNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHP 253 + + S ++ + + +II G + ++ ++ H Sbjct: 191 DMDDSKQGLSRSAIHRDFMAALTQQQDTPPPGLPRRLIIFGISALPQQALEALAALSQHC 250 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVKR 312 +++ H I + + + P+ + LL R+ + Sbjct: 251 QILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRVNPLLAAWGKQGRDFIGL 310 Query: 313 LGNVSNEMYGRSMVISKSFL-----------PPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L + + RS ++ L + + + S + Sbjct: 311 LYDHDDPDSYRSAFQNQIDLFESREPHTLLQQLQQDILDLEPLPAPDRRPPLEMDSSLQF 370 Query: 362 IEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFG 410 + + E + L + ++ D + Sbjct: 371 RIGHSAQREVEILQDELLDRFSNDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDPRY 430 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAK 468 + +S + + + + SLL+ I L+ P + F E L + Sbjct: 431 LPYTLSDRSAGAASPLAQAVESLLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQLA 490 Query: 469 NALELVALRGNKNSYDIMDLK------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 ++ +R NS L + + + + + E + Sbjct: 491 RWIDQARIRWGLNSPQRKTLDVPDFEQNSWAFGLKRMLAGYLLGDGPAWMGIEPLDEVAG 550 Query: 523 LVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + + L T + + + + S W + L ++ L Sbjct: 551 LGAELAGRLSRLLDTLEQHWQQSRTDASARQWQQRFTQLLDDLFAPGDEADQTLDAG-LR 609 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 L+ + E + ++ E++ + + + + R + F Sbjct: 610 DALNDWLAACAEADFDSPLPLTVARRPLLDALNAESLSQRFMAG-RINVCTLMPMRAIPF 668 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700 + L G+ +G +P+ F + + E R L + Sbjct: 669 RHVCLLGMKDGDYPRQQQPMDFDLMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLYIS 728 Query: 701 RSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + R +N S + +L + +L + ++ + + Sbjct: 729 WTGRNVRDNSERPPSVLVAQLRDHINQRWRTDLGEPVDALTVSHPLQPFSARYFFHSDQD 788 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P + ++D A R L + + G + Sbjct: 789 AVPDTSLHTYA----NEWRALHDGQAHKVRNDQPLPPLE-NDEPITCAALGRFLKQPVAH 843 Query: 819 LIKKRINKNTPEINHLMKQ 837 ++R+ + ++ Sbjct: 844 FFEQRLKARLKQQRQVLDD 862 >gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] Length = 1259 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 103/954 (10%), Positives = 233/954 (24%), Gaps = 148/954 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK----GTKGPIIIAGSTGSIPA 241 + ++ + ++ A Q+ +R + ++ + +++ + Sbjct: 323 RLWERVAQRYEKKKAGHRALDYTDLQLRAVRLLEDSEVRRHWTASLRYVMVDEFQDTNRL 382 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 ARL+ + GA + D + T SL Sbjct: 383 QARLVGLL--LDGGARLFVVGDGKQSIYRFRGADVSVFVETRRQVQEKGGVAVSLRHNFR 440 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + V+ +S + + E +P +K V + Sbjct: 441 SQG---------PILDFVNRVLGPVMGESANGENAAPPSFKIEYEPLVPTREKMGGSVEI 491 Query: 362 IEADNER-----EEAISIAIALRMSLDENKK-------------KSALITADRNLARRVK 403 + D+E EA A ++ ++ A++ A + Sbjct: 492 VHIDSEGLAGRLVEATEAARWIQRFVESGGTVGGESGLRPARYGDVAMLLAVSTHLPVYE 551 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L L G+ I+ L +L ++ D +A+ ++ PL Sbjct: 552 LALQEAGVPYRIAGSRNFFRRQEVRDLIQVLRWVYDPGDEVAMIGALRSPLFGMSDDGLT 611 Query: 464 LSRAK------NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + L + L DR A + V W+ R + E Sbjct: 612 IIALATGRGKERGLLAFSADPLGWVDGSRKLPLSPWDRRAAEDAARQVAKWRRRAAWESA 671 Query: 518 ELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 +VD T L T + + I + ++ + Sbjct: 672 GALVERIVDETGIVPTLLQTSGGRQKAENVRRFIEMAYEREAEGRVSLSAFLSWIQWQIE 731 Query: 577 FEEEGKTLS------SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLF 629 + + + ++ + ++ + D+ + E + + Sbjct: 732 DDTDEEEARVVDGDDAVTVMTVHQSKGLEFPVVVLPDLARPFRSRREMWCMDEDGALAVK 791 Query: 630 ILGTLESRLLNFDTLILGG---------LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 G E + + G + + A++ + + K Sbjct: 792 WPGVGEYAGFGWYERVREGEARKDREEEMRKFYVALTRARDHLALFGTRKLPSKKKDPLT 851 Query: 681 IGQAAHDFEMANGT-----------------RHLIYTRSLRENNI--------PTIASRW 715 + A F+ + +I+TR + P + Sbjct: 852 VDTARSWFDWLICSLAQGDLSGAEELVGRAGEGVIWTRVAAPDGAAGSIDAARPQLKDSG 911 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT---------------TKQPHYKRPKPF 760 + + ++ Q + ++ P Sbjct: 912 ISEERPGKSPEVIESPDSGAQTADGQAKGAAARLIHHILTLGNTEGGWDREDFVITPGGG 971 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK------------------- 801 P + T S S + + P Y L+L + Sbjct: 972 PLGRPEMATVSASRLLEYDICPRRYYYHWTLRLPALDQAFDTASGDGLGEQEIPDPLMGG 1031 Query: 802 ----------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 RGT+ H + I + Q+++ L Sbjct: 1032 DQGPAEMERVGWSPLLRGTVVHRVCERWTGAEP------ILDRLDQVLEEFRLTGPLGRR 1085 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--LTGFADRIDLLK 909 R + + K + + ++ P + ++ L G D+I + Sbjct: 1086 AREEVREELLRYAD---GELSKRLNRAQHVWSEWPFYLRLQGAQRVWDLHGQVDKIFV-A 1141 Query: 910 SGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 G + D+KT Q+ L A A++ + Y+ Sbjct: 1142 DGRTVVVDFKTNRTAPEGVGALVDHYRLQVQLYAWAVERN-------LAPVDEAYLYFTD 1194 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 ++ + D E E+ L + + PF L + + Sbjct: 1195 PGELAPVPVDPGNVR--EALERVDARLNHLSREWRLEAYPFTEDLSMCRVCPYR 1246 >gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054] Length = 1073 Score = 120 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 102/1045 (9%), Positives = 240/1045 (22%), Gaps = 150/1045 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV---VEEKFTADLLLSYNLNPP 102 V T +A EL + +LGD F LL + L Sbjct: 67 QVLGLTFTNKAAGELAERVRAALLRAGVRAEDEDALGDPQISTYHAFAGTLLKEHGLRLG 126 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + RLL A + L P L L + + Sbjct: 127 IEPDVRLLADATRFQLAARVLRQARGPF--------PALTGTFSALVAELVALDSELAEH 178 Query: 163 EKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWTERLVELNASSP 207 + L E L + + R +L Sbjct: 179 LVEPARLREHDEELLDQLAGVKLTNDDLRAVPKAARGRQELLRLVEDYRARKQKLGLLDF 238 Query: 208 VGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLP 260 ++A R E L++ +++ + A +++ + G V Sbjct: 239 GDQIAASARLAQQRPEVGRLLREQYRVVLLDEYQDTSVAQRLMLAGLFGGESGAGHPVTA 298 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W + + + + + L S Sbjct: 299 VGDPCQAIYGWRGASVANLDDFPRHFPLADGGPAHRFAL-----------------SENR 341 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 ++ + + + + + + E +A ++ Sbjct: 342 RSGGRLLDLANRLATPLRAMHEGVEALRPAPGAERDGSARVALLPTHAAEIDWLADSIAH 401 Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + A++ + L + +++ L + L ++ + Sbjct: 402 LVRTGTAPGRIAVLCRAGGSFPDIHAALVERKVPVEVVGLGGLLQLPEVADLVAVCEVLQ 461 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 A+ L+ P + G + L + A + R + + + + Sbjct: 462 DPTANAALVRLLIGPRWRTGPRDLALLGRRAAELVRTARPGEQDALSAAVAETDPTEVVS 521 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + + + + + ++ Sbjct: 522 LADALETFVDAEQPDDLPFSPEARV------RFARFAREIRELRRALAEPLMDVLHRVLT 575 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 V L E + + + + A + + Sbjct: 576 ATGLEVELSASPLALAARRRETLHSFLDIAASFADLDGDPGLAAFLGFLRAAQEYERGLD 635 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQSDL 672 T+ +L +S+ L +D + + GL +G +P ++ + L ++ D Sbjct: 636 AGLPGGEDTVKVLTAHKSKGLEWDVVAVPGLVKGAFPSKKGRDSWTSTRKVLPHALRGDA 695 Query: 673 NLKTAE------------------KYIGQAAHDFEMANGTRHLIY---TRSLRENNIPTI 711 A+ + + + R L+ Sbjct: 696 ATLPADPAWDAKGLGRFKQEMTEHAGVEELRLGYVAFTRPRTLLLASGHWWGPTQKTRRG 755 Query: 712 ASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 S +L L G + + + + ++ P + A Sbjct: 756 PSDFLTALREHCERPGNGEIEHWAEPPGKDEKNPALDVSVETPWPLPLDPDAQRARRRVA 815 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIP-----HFKKDPDRTDRGTLFHNIITELI 820 Q + + +P AV +R+L + RT R ++ Sbjct: 816 QVVRHRLAGAPAPEGEPMAVEDQRLLASWDRDLTALLGELERSRRTTRDVELPASLSATQ 875 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH---------------------- 858 R+ + + + + W Sbjct: 876 LMRLAADPDGFARDLARPMPRPPAPAARRGTRFHAWVQSRYDQPLLLGPEALPGLDEEEI 935 Query: 859 ----LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG--- 911 ++ +FL + V P ++ + + G D + G Sbjct: 936 EDERDLERLKDAFLRGPYARR---TPYAVEAPFQLVLAGR--VVRGRIDAVYRAAEGGAG 990 Query: 912 -------------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 ++ D+KTG QL++ A + ++ A Sbjct: 991 GAGGAGGAGAGAPRYEVVDWKTGR------EDSGDPLQLAVYRLAWAEQAGVAVEEV-AA 1043 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSA 983 + Y+R + + K+ Sbjct: 1044 SFCYVRSGRVETPSGLPGRKELSDL 1068 >gi|319947957|ref|ZP_08022137.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4] gi|319438385|gb|EFV93325.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4] Length = 1005 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 103/886 (11%), Positives = 226/886 (25%), Gaps = 132/886 (14%) Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 L A + L +A + A AR + G++ + Sbjct: 105 LLAAAVDKALDADPGRLAAVAAEPVTGQAVARACLRLGTVEPGSV--------AAETPLH 156 Query: 273 TITEKSTNITSSNTTYSTHPQY-SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 + + T + + QY ++ L+ LD V R V Sbjct: 157 SEVLRLAGEAHEMTGGAYYTQYEAVTTALERLDDLGRVVLAAPLRGTHAERRLRVALSER 216 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKS 389 + + + P + ++ A + +E ++ +R L E + Sbjct: 217 GVTPVAGTGSDHLASAAEPASADAVTGTHVLHASDSDDEVRAVVRFVRSRLAEGVPGHRI 276 Query: 390 ALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 + + R+ GI + + L + L LL + + + Sbjct: 277 GVYYPSPDPYLRLLHRAFAEAGIAVYGPSDSTLGRSPAGRSLVRLLRLDTSMMPRAELLS 336 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 ++ ++ L R D + + + T+ + Sbjct: 337 IIAEGSVTPLDDSGAAVSSRRVESLTRTRFPVIGGGDWD---RLDEHLRTEPEASGESEV 393 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + L+ I + + +T + + Sbjct: 394 LGESDRAAASALLRLIRLIRSGLAAVDAARTWTEAADAVRGL------------------ 435 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + + ++ + + + A + + E+ + + Sbjct: 436 --VTAAFRQGPDRAAVLAVVGALADLDAIAPAITRDRVAGAVTARLDPVGDRVGEEGAGV 493 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 + ++ + DT+ + G+ EG+ P A +P L + + ++ Sbjct: 494 ALGPIDDAVGRDLDTVCVVGMAEGLLPVLHAPDPLLPEGSVEPPSAEVLDERYRVLQLAL 553 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ------------ 736 + R + R I SRWL L + + Sbjct: 554 AAGSERRLCSFPRGSMRGGGDRIPSRWLLPTLSRLVGSPVHATRWQEDVAGCAAVIGVSS 613 Query: 737 ----------------------CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------ 768 + T + + Sbjct: 614 FVDGVLAPPVALGTDPATRTELRLRNLAAGGWRTRPDAPALLVAAHEMRRDRRQGRFTRF 673 Query: 769 ----------------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP--DRTDRGT 810 S + ++ PY + +L++ + D D D G Sbjct: 674 TGDVSSAADLLTVLEQPLSPTRLEDWAQSPYLFFLSTVLRVRTLDDPAADIEMDLRDYGD 733 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE-NLPPHIDIIWRHLFHKIS----- 864 L H I+ + RI + L+ + E P + + Sbjct: 734 LVHAILQRYVSARIESGSGPDRDLLMAALRHECEAAIAASPGLVASLWRRREMMLAAELD 793 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH----------------LTGFADRIDLL 908 F E + + + + L G DR+D+ Sbjct: 794 RWFAEDSADFDAGWRPAATELGFGRSDGDGAVVEIPFEVSTSTGTATVLLAGSIDRLDVR 853 Query: 909 KSGFVDITDYKTGDNPKKETAQKLIDP-------QLSLEAAALKAGSFSQIDCRKVANLF 961 G +TDYKTG P+ E DP QL L A + V+ Sbjct: 854 A-GTQRVTDYKTGKPPEAEARPTADDPTLRGTRFQLPLY-----AAAAQSAGRAPVSGAR 907 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 Y ++ + + I+ D +++ ++ +++ ++ LQ G P Sbjct: 908 YWYCTERGEFEQISLDI----TEDVMDRVREDVGHLIDALQRGWFP 949 >gi|190889666|ref|YP_001976208.1| ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] Length = 1183 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 96/818 (11%), Positives = 214/818 (26%), Gaps = 86/818 (10%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233 A + + E + + + + I++ Sbjct: 360 QAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVD 419 Query: 234 GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + + P ++ ++A P + D + + + S Sbjct: 420 EAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFSEESDR 479 Query: 286 TTYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--P 333 T S D L+ E + N V+ +S Sbjct: 480 TRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTADNARGLSAVGEPVVHRSSRIGH 539 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RM 380 P D+ + E + A E+ A IA ++ + Sbjct: 540 PGAVDLWDMVAPEAAVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKE 599 Query: 381 SLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 L E L+ + L R I + + + L++ + L +L + Sbjct: 600 RLIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLL 659 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 D +++A ++K PL + + A A + R A + Sbjct: 660 PEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESAWSHLRKF----AADGNERFRAAVE 715 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 K + ++ + + Q + L T ++ ++ + Sbjct: 716 KLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPG 775 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + E +++G+ + + ++A + +D G + Sbjct: 776 LQSFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKA 826 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 L ++ T + + L + + A+ L+ L + Sbjct: 827 FTHTHLPKLRLIETEPDEPPMPAWVPVADLANSLTQNDAARIQILAEEEYRRLLYVAMTR 886 Query: 680 YIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + T H++ + +L E + A+ + G + +R Sbjct: 887 AADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAASFSDPDGEWPGIKWRVPRVERS 946 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 ++ + +P PP PR S S +I+ L Sbjct: 947 FERINRSEA-RDNEISLPEGLLRPLPPQAELPRPLSPSGAGTIID-------EDEGGLVV 998 Query: 796 IPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + + +DR G L H ++ L + ++ Sbjct: 999 VSPLFSEKQGSDRSLEKGRLLHRMLQALPDIPPEERPGAAQRYAERAAR-------FWSE 1051 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLK 909 R L+ ++ E+ + + ++ ++G DR+ +L Sbjct: 1052 A---ERRKLVDSVLKLLDEKDLQPVLGEQARPEVSIMGTLTLDGRRYAVSGRIDRLAVLA 1108 Query: 910 SGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 V I DYKT P QL++ L Sbjct: 1109 D-RVVILDYKTNRVPPATEEAIPFAHRAQLAIYREILA 1145 >gi|42524525|ref|NP_969905.1| putative exonuclease [Bdellovibrio bacteriovorus HD100] gi|39576734|emb|CAE80898.1| putative exonuclease [Bdellovibrio bacteriovorus HD100] Length = 907 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 55/489 (11%), Positives = 134/489 (27%), Gaps = 51/489 (10%) Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + + EW+ + ++ + + + + + + + I Sbjct: 418 RELLQNAVAGTSLTWKEWLSYLESIVAAKEYTLEKGEPRGIMVTKLMSAHSEKARRRIFV 477 Query: 648 GLNEGVWPKNTA-----KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 GL + ++ F + + A+ L + Sbjct: 478 GLTDEALKGRNKTQLSGQDYFELAKDIGFYLDNPDQSDLEFELRLLAEADSDEDLYCFGA 537 Query: 703 LRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + L + + ++ + L ++L Sbjct: 538 TDLSGSLCSPATFWMSLQGEHEKLTVPLETRWDELQHSTQRGERPLLAGRKELVEQRILQ 597 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 + + S S ++ + P+ A+R KL +P D D RG L Sbjct: 598 DLGKVPFATITSPELPRISASAVESFLECPFIFAAQRYFKLKDLPDIDLDVDHRTRGQLA 657 Query: 813 HNIITELI-KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H I +L + E + + + + + + ++ FL+ E Sbjct: 658 HAIFEKLTIEPMRFDWKVEELDQLLETVRVEKKLVFADERLWTPLKKKHIQLGLRFLDFE 717 Query: 872 EKIQSSI---EKIFVNIPAKMAIESIG-----------IHLTGFADRIDLLKSGFVDITD 917 ++ + I + ++ ++G DRID + + D Sbjct: 718 KRWREEFKKTRTIGREKRFEFYLDPQSGDISTEARDNCFRISGQIDRIDSDGGKQLVVVD 777 Query: 918 YKTGD---NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR---------- 964 YK+ + + + QL L+ G + + +Y+ Sbjct: 778 YKSSSGGISAHGSWLKNH-ELQLLFYMWVLEKGLVQDVQGEVIGLFYYVFRNFERKGFKV 836 Query: 965 --LKQKFKIDCITNDKKK--YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 L DK + + + + L+ + ++NGE + K+ Sbjct: 837 DDLAGVLYPANKRKDKNATFEAKERYLTEFSQILMTTLGRIKNGEC--DAKPA-DFKTCT 893 Query: 1021 QSEYDHLAR 1029 E+ R Sbjct: 894 SCEWRRQCR 902 >gi|260440049|ref|ZP_05793865.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2] gi|291043336|ref|ZP_06569059.1| exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2] gi|291012942|gb|EFE04925.1| exodeoxyribonuclease V [Neisseria gonorrhoeae DGI2] Length = 1068 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 98/876 (11%), Positives = 217/876 (24%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKLW-----------RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSETVGSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGAMRGGTDQLFTWKQAADRMVLGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVD--HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W Sbjct: 491 PEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLPDR 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E +++ + + I I R +D E+ Sbjct: 551 LFEAGADDQKAVQNLENEWVKWQAETELAQFSGQLP--PHTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + S L L+ ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPRPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|42519129|ref|NP_965059.1| hypothetical protein LJ1204 [Lactobacillus johnsonii NCC 533] gi|81667804|sp|Q74JA5|ADDB_LACJO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|41583416|gb|AAS09025.1| hypothetical protein LJ_1204 [Lactobacillus johnsonii NCC 533] Length = 1158 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 110/1031 (10%), Positives = 257/1031 (24%), Gaps = 170/1031 (16%) Query: 46 SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V I VP RA+ +L L I S + + Sbjct: 32 DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 L + + ++ L +++ +++L + L + + Sbjct: 87 LPQILDDAASVMLLEQIVKDHQDELKLFQNQTQVT---------------SGALRQMYEA 131 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 I + +L + +K L+I + ERL E A+ L+ Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNQF 189 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + + ++ + K+ Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N Y + + + L + + + S Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395 T + ++ + ++AD+ EA +A + + + + ++ + Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L + I + + +L + + L+K L Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402 Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + + LE L + + + + +S Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT-------KSLKSFVDADVIALDKSEK 455 Query: 513 SEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEH 569 ED + +D + + L + + + + + + D Sbjct: 456 EVEDLDRLRDYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNRVAKRLESWRKEANDTG 515 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 E+ TL+ L + K + ++ D++ + Sbjct: 516 DLQLAQQPEQVWSTLTDLLKDYL--LVANKFSVDQFFDLLISGFSEANFSQIPSTLDAVN 573 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYI 681 I + + + + G P+ F S LN L+ +K Sbjct: 574 ISELGMVQGQGYKQVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKIN 633 Query: 682 GQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKR--- 734 + ++ + + + + N S + ++LL L D F Sbjct: 634 NLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFAQHDLPQNN 693 Query: 735 ---------GQCYLDWTRKLDYTTKQ-----------------------------PHYKR 756 + L + L P Sbjct: 694 GEVLTFITNPEASLGYLTYLKNKAATDVDSLLKMTEEKIGEVAKNVLEGSSFKNIPQDLS 753 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P+ L S S+++ + + + L L F+ + D G +H Sbjct: 754 PELAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETF 811 Query: 817 TELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISH 865 L+K+ T E + + ++ + L + H + + Sbjct: 812 DYLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTA 871 Query: 866 SFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK 909 + + + + + + + + L G DR+DL + Sbjct: 872 NVAHYWHSNVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQ 931 Query: 910 -SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVAN 959 + V + DYK+ + + Q+ LK + F+Q V Sbjct: 932 VNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLG 987 Query: 960 LFYIRLKQKFK 970 FY + + Sbjct: 988 AFYQNITSSLE 998 >gi|223039063|ref|ZP_03609354.1| conserved hypothetical protein [Campylobacter rectus RM3267] gi|222879702|gb|EEF14792.1| conserved hypothetical protein [Campylobacter rectus RM3267] Length = 863 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 92/656 (14%), Positives = 191/656 (29%), Gaps = 79/656 (12%) Query: 361 LIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLELTRFGINIDI 415 L+ + ++ A A+ + + + A+I D + A ++ L G + Sbjct: 240 LVLKRSFSARSLQAAYAMAKASEFVAGGIKPENIAVILPDESFAEILR--LHDRGKMFNF 297 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--AKNALEL 473 + G + T IL ++ AI L + A F E L + L Sbjct: 298 AMGESFTRTRFFQILKCIVTAINDKIR----VNLSEDNYANFNEFEFNLCEFGVGSELFA 353 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 G + D ++L+ + +A + + ++ + E+ A L + + Sbjct: 354 KFKNGFEEPCSFEDFRALMEEILALESD-----PAAAQKTREELFYAQSLARYFSFTLRQ 408 Query: 534 -----LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 L+ + G I L L+ + +L + + Sbjct: 409 ICEIFLIKLARLRLDHVGGGKIGVMGVLESRGLKFEGVIVLDFNDDLVPKRSVNEMFLSS 468 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + G + + G K I ++ L F+ + Sbjct: 469 RVRQKAGLIGYVDRENLQRFYYESLIGGAKKAAICYAANEE--KIASRFLGEFNAVEDAR 526 Query: 649 LNEGVWPKN------TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 ++ + + ++++N EK ++ A + RS Sbjct: 527 FSDESYAALFNGEFDAKTGFADEQKFEAEMNPHLDEKNEAKSG----QAKTAKE----RS 578 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 L E ++ + + + L++ + T +P Sbjct: 579 LFEFDVQGELDSGANLVGKFDENATQNKTPSQNPRALNFIKFTRKTPAKPKIFEQDIIVK 638 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + SFS + + P Y R IL + + D G H + E K Sbjct: 639 HDFFAIPLSFSRLNTYLQCPRRYYYRYILGVKPPVMP-QTASAADFGNSLHRALFEYYSK 697 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKI 881 + + ++ + N+PP I K F E+ ++ Sbjct: 698 FERFDLAK--------FETVLRELNMPPLEREITMIEMEK----FKAVEDARYEAGWRVH 745 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + G+ +TG DRID + G + + DYK+G QL Sbjct: 746 GLEKELDSVFA--GVRITGKIDRID-GRGGELAVIDYKSGK-------FDAKSLQLPFYE 795 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 A + + ++ LK N ++ E ++++ L I Sbjct: 796 ALV----------GRPCEGYFYDLKDN------MNLVAGEASTEALAEAIEQLKSI 835 >gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] Length = 1161 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 81/809 (10%), Positives = 190/809 (23%), Gaps = 59/809 (7%) Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 W ++ G+ R + V + Sbjct: 387 YASWVHFKLDRGIDH--VLIDEAQDTSPRQWDIIESFVSEFTAGAGARGEIHRTVFAVGD 444 Query: 252 HPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G T + S + H S A +LD +D + Sbjct: 445 EKQSIFSFQGAAPREFDLRRRAMATRHAHANLSFESVSFKHSFRSGAAILDSVDYVFREQ 504 Query: 311 --------KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 V + + + + + + + + + +V L Sbjct: 505 TIYRSIHIDDAYPVHDALPDAAPATVELWPVEEPDTREEIEGWQAPFDTVSPASPEVKLA 564 Query: 363 EADNEREEAISIAIAL-----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 +A+ A + R L+ V L GI + + Sbjct: 565 RRVESEIKALIAAGTMTGPLGRRRRLRYGDVMILVRRRGAAFDAVIQALKHAGIPVAGAD 624 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 + L+ + L L +A+ D +A+A +K PL + L Sbjct: 625 RLKLTAHIAVIDLMHLADALLLPQDDLALAVALKSPLFGLTDDDLLTIAPTRTGSLR--- 681 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 ++L ++++ ++ + +L + Sbjct: 682 -----------EALAAHAASSERLRIASEFLETCAMRAARMTPFAFFAWLLGGDSGGHGG 730 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + G+ + + L + W + + + Sbjct: 731 RARILKRLGHEANDALDEFLELALTYERKAPASLQGFIAWLRAADTDVKRDMEILRDEVR 790 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + + ++ + T P + L ++ + ++ G + Sbjct: 791 VMTVHGAKGLEASVVFLVDTTTSPSDTQ--RLRLIHMPHGNAGPGEVVLWAGAKDDD--- 845 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + + E + + + N + Sbjct: 846 --------TEDVARARDTMRGEIEDEYRRLLYVAMTRAAERLIVGGCKPGNRNNVRELSW 897 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP-KPFPPLEAQPRTYSFSEI 775 L+ G L + + R R P E + Sbjct: 898 YDLIEKGLAASPLVLTEVETPFGPAKRYARKDEAALDIARDDAASAPAELKSLPDWLYAD 957 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + A D + R L + L++ + Sbjct: 958 APQVRAKEITLAPSSAGGDTAAPLSAEQTILQRARLTGQWVHRLLQSLPDLAQEAREAAA 1017 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEKIFVNIPAKMAIES 893 + + H + + R + + ++ + + V+I ++ + Sbjct: 1018 LRFLARHVQDAS------EEERTTLIRQVLALIDDPRFAALFGPGSRAEVSIAGRLTLNG 1071 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + ++G DR+ + V I DYKTG P+ QL+L A L S Sbjct: 1072 TSVRVSGQIDRLVMTPD-EVMIVDYKTGAVPQGA-MPPHYVRQLALYRAVLAKLS----P 1125 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYS 982 R V + + + + Sbjct: 1126 GRPVRCALLWTQGPQIVEVPPSTLDAELA 1154 >gi|172040183|ref|YP_001799897.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] gi|171851487|emb|CAQ04463.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] Length = 1188 Score = 119 bits (298), Expect = 3e-24, Method: Composition-based stats. Identities = 123/1144 (10%), Positives = 267/1144 (23%), Gaps = 170/1144 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ L++ V + PTK A + ++ + Sbjct: 72 PGTGKTSLLVDTLVHFLAAGGSAE---------EVMVVTPTKDAATAVNTQLVARLASMS 122 Query: 71 --KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128 +T P ++S+ + LL S P RLL A R L ++ Sbjct: 123 SFAATRTP-VRSVHSWAFAALRSMLLASDREAP------RLLTGAEHDADVRLLLAGHVE 175 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL 188 D P + + A+ L D++ E +L AL + W+ A FL Sbjct: 176 DGAGAWPKHI-RPALGYVGFARQLRDLLLRAEERGVGPGELTALGEKYDQPMWVGAGQFL 234 Query: 189 KIASK---------------------------------YWTERLVELNASSPVGYQIALM 215 + W E+L + A Sbjct: 235 DEYRQTRRLAQSISLNASELLHTTLQEMADGPGRAQLDRWREKLRLILIDDAHNLDPAAA 294 Query: 216 RAEAEHLMKGTKGPIIIAG-----STGSIPATARLMSTVANHPNGAIVLPGLDC------ 264 + + +++AG A L+S A N +VL G Sbjct: 295 EFLEQFFT--PETRVVLAGDPDQCVFHFRGADEELLSKYAADENHRVVLSGSQRFGAPTA 352 Query: 265 -------------HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + ++ + P A +R Sbjct: 353 RAINALTGHLPHVDTRIPLRVAEGAEAAQEAEATAGELVAPDAGRAGATSGAGGERNQPI 412 Query: 312 RLGNVSNEMYGRSMVISKSFLPP--DTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 R+ ++ R + D ++ ++ + I + + Sbjct: 413 RVLRANSGTAERLHITDALRRAHVRDGVAWQDMAVIVRSVGEIAPIRRALLTHGVPVRVD 472 Query: 370 EAISI------AIALRMSLDENKKKS------------------ALITADRNLARRVKLE 405 + I L +L+ + ++ + + Sbjct: 473 QTSIILAEQPLIRLLLTALEATYRPLENSEVRVLMESMVGGADPIMVRRLERVLAQALAR 532 Query: 406 LTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 G + +AG+P ++ S L + + ++ A + + + Sbjct: 533 QRLQGKPVPENTAGLPFQSSDALSTLLNGTASAEDAAEWTAGFNNRELQILQDMSDVLTA 592 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 R + L + + +R ++A V Sbjct: 593 GREAQRAGQSVEMVLWEIWKATGLDTRLQERALRGGTFGSQADQDLDSVMMLFDMAGDFV 652 Query: 525 DHILQC----------ITPLVTYKT------------NKNSTCGNLSISDWTKLTVTCLQ 562 + L T ++ G + Sbjct: 653 ERHPNASIRTFCEEVRAQELPTGGRERGVASNAVEILPAHAAVGRQWHTVVVTRVQEGSW 712 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 L + +++ S + ++ I+R V Sbjct: 713 PAGPTVGGLFGQLELVDLLDRGIEPGTRVSRVASAVHEERRLFLVAISRATRSTLVTCID 772 Query: 623 EKSSTLFILGTLESRLLNFD--TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 S + + + + LG +++ + +Q +L L Sbjct: 773 NASVENGVPSRFVEEITDAPGAAVPLGTVDQIEQEDPVGQEATPGEPVQGELGLGLELGD 832 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 Q A+ L + L + R L ++ + Sbjct: 833 SAQQGGPAVQASPAEQLSSSDQLSPAEQLSALPRVLALEPLIAELRDVVTDPTQRHHRRV 892 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPR-------------TYSFSEIKQLINDPYAVYA 787 + + P + S S++ + N + Sbjct: 893 AAARNLAAMAEAGIFGSHPVDWWGMAEPTTMERVTDRRGGVSLSPSKLDNIDNCALKTFF 952 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 + + GT+ H I ++++ ++ + + Sbjct: 953 DDNRGAQE------ETNPMRVGTVVHAIAQAIVQQDLS-LEDAQYAARTALKWAVVGPAF 1005 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFAD 903 W + E Q+ + V + + L G D Sbjct: 1006 EVNAALERWEQGIANLHSWI--TETCTQTEGTEWEVEQQLDTTLGTLPTGEEVFLRGRID 1063 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 + G V + D+KTG P K A+ QL + ++ I Sbjct: 1064 LMATDADGRVVVYDFKTGKTP-KTAAEAQASRQLGAYQFLVHVN-----RGKQPYGAHLI 1117 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + + + E ++ +NL+ + Q + Sbjct: 1118 Y--PATSEGKLKKSSQPDFSPEQLAETRQNLLAAAEQISEPVQ----IATPGDAQCKYCS 1171 Query: 1024 YDHL 1027 Y HL Sbjct: 1172 Y-HL 1174 >gi|284032498|ref|YP_003382429.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida DSM 17836] gi|283811791|gb|ADB33630.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida DSM 17836] Length = 1050 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 115/921 (12%), Positives = 257/921 (27%), Gaps = 121/921 (13%) Query: 189 KIASKYWTERL-VELNASSPVGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 I + W L V AL A E G +A ++G P+ Sbjct: 105 PIVAATWRTALSKAPGVFDEVAEHPSTIQALAAAHRELRDLSDPGLEKVAAASGLGPSLI 164 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 +L V + D + T + TE++T ++ + Y L L Sbjct: 165 QLHRHVCDQ-------LQTDWYDETDLLRAATERATADPAAVAELGSLVLY----LPQEL 213 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS-DVALI 362 ++ + ++ I + P+I K + ++ Sbjct: 214 TQAEASFVASLGIAAADVTVIVGLTDVKRADRAVRRSLERIGIDLPPSISKNYPVATEVL 273 Query: 363 EADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 A + +E + + +L+ + + L A AR + L + ++ P Sbjct: 274 NASDADDEVRCVVRDVLATLEKTPAHRVAVLYAAATPYARLLHEHLAAAKVTVNGPGTRP 333 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + + L +L + + + + + E + + Sbjct: 334 VHERALARTLLEVLALVDHDLPRADLFRALANAPTRDFTGE--------RIPVPQWERLS 385 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + ++ + + + +A + + Sbjct: 386 RAAGVVRGDDWDVRLARYADTERRTADQERGAEDPRPAVARRAEHNASHALRLHAFAVEL 445 Query: 541 KNSTCGNLSISDWTKL-TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + W++L V L + + + + Sbjct: 446 RRRLNAAALMESWSELSHVVLRLFHDLLGDYASLPVEEQYAAVAVEGTLRGLSTLDELGT 505 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 ++ + + L +++ + + + S L+ D + + GL E ++P Sbjct: 506 PASLTVLRDVLDLELQQSLPRVGTFGTGVLVAPLSASIGLSVDVVFVVGLAEDLYPGRLH 565 Query: 660 KNPFLSRVMQSDLNLK---TAEKYIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTI--AS 713 ++ L ++ + ++ + H G ++ + + + + Sbjct: 566 EDALLPHRVREAAAPELASARDRLDRKQRHLLAAFSAGASRVVASFPRGDLRRSSRRLPT 625 Query: 714 RWLQ-RLLVLGGTDFFDNL----------------------------KKRGQCYLDWTRK 744 RWL L L G ++ Sbjct: 626 RWLLGTLRELSGDHALAATVWDQASYDGHLLTSASYSGSLTTAKLPATEQDWQVRAAAAG 685 Query: 745 LDYTTKQPHYKRPKPF--------------------PPLEAQPRTYSFSEIKQLINDPYA 784 L T R P + R S + ++ P+A Sbjct: 686 LTLTDAVVDRARLLLRARAADEFTRFDGNLSGVDGLPDYATEDRIASPTSLEAYAACPHA 745 Query: 785 VYARRILKLDFIPHFKKDP--DRTDRGTLFHNIITELIKKRI-------NKNTPEINHLM 835 + R+L++ + + G L HN + + + +PE L+ Sbjct: 746 YFVERLLQVQPLEAPEDLLVISPVQVGNLIHNSLDAFVTRLAGSLPGYGEPWSPEQRSLL 805 Query: 836 KQI---IDSHFEKENLPPHIDIIWRHLFH------KISHSFLEHEEKIQSSIEKIFV--- 883 I + FE E L H + R + + +S+ + Sbjct: 806 LTIGADLAQRFEAEGLTGHPRLWQRERLRILGDLMVLLDDDDRWRAEHNASVVASELRFG 865 Query: 884 ---NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ-----KLIDP 935 P ++ I S + L G AD++DL K G + +TD KTG + E + Sbjct: 866 LDGEPPVEIPIPSGRVLLRGSADKVDLGKDGTIYVTDVKTGGFSRYEAIENDPVAAGTKL 925 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 QL + A A +A + + Y +++ + + E++E+ + L Sbjct: 926 QLPVYAYAARARLGDESTPVE---AAYWFVRKGGRRIPVPLTP------EVAERYVHALD 976 Query: 996 EIVTLLQNGEQPFISHLRLSE 1016 IV+ + G P + Sbjct: 977 VIVSSIAAGYFPAKAPEVPDF 997 >gi|78223101|ref|YP_384848.1| exodeoxyribonuclease V, RecC subunit [Geobacter metallireducens GS-15] gi|78194356|gb|ABB32123.1| Exodeoxyribonuclease V, RecC subunit [Geobacter metallireducens GS-15] Length = 1060 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 101/936 (10%), Positives = 213/936 (22%), Gaps = 101/936 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L LVE R P LA I V +K + L E TG + Sbjct: 14 LVDRLVEVLRRPLAAP--LAPEVIVVQSKGMQRWLSMELATATG---VWANGAYPFPNAF 68 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 L P L+ I+ + D L+ Sbjct: 69 VWDLFRKALPDLPAASPFDPA----VLSWRIMGLLSGFLDQPAFAPLAGYLAGEERELKL 124 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 LA +AD D E W W E Sbjct: 125 YQLAGKIADTFDQYTIFRPDMIARWEQGTED---HWQAVL---------WRALAGEGRGL 172 Query: 206 SPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + R A I + G + + +A+ + + G Sbjct: 173 HREAVRSEFFRRLARGEVDTALFPERITVFGISYLPQFHLDVFRRIADFTEVNLFVMGPC 232 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--------LAKLLDFLDIKREDVKRLGN 315 I + +P + + L L L Sbjct: 233 REYWADILPERIIARLSPEEREVRIEGNPLLASLGLLGKEFSDTLVELGATAGGDTDLYG 292 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + MV + + + + + + E + Sbjct: 293 DAPDTTLLGMVQNDILR---------LEGSSGDQRPVDAADRSILISSCHSPMREVEVLH 343 Query: 376 IAL----RMSLDENKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTL 425 L + D + ++T D + R I I+ Sbjct: 344 DTLLNLFASADDLTPRDILVMTPDIETYAPYISAVFDGCRDPRLKIPYSIADRSIRREGG 403 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + ++L+ K A+ ++ F L R Sbjct: 404 LAETFLAILDLSGKRFPVTAVTEILASSPVHGRFGLDAGHLELIRTWLEETRIRWGMDGE 463 Query: 486 MDLKS-LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV----------DHILQCITPL 534 ++ R + + + EED + ++ + + + Sbjct: 464 ERRRAGFPPYREHSWRAGLDRLILGYAMPEEDGRMVEGILPFDAMEGEGPAVLGRFAGFV 523 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + ++++W +L L + +L + + + + Sbjct: 524 EGLHALVDELDRPRTLTEWVRLCRRILDDFFAPGEEGAFDL---ATLNGILTELETVRDE 580 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 A A+ I R V+ + + L R + F + L G+++G + Sbjct: 581 AGFGGAVALPVIRAWLRGRLDREVRGLGFMTGGVTFCAMLPMRSIPFKVIALLGMSDGAF 640 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIA 712 P+ F ++ + + RH I + + + +N Sbjct: 641 PRRNTPPGFDLIARDRRRGDRSLRDEDRYL-FLEALLSARRHFIISYTGQSIRDNSTLPP 699 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKL 745 S + L G F D + + + Sbjct: 700 SVLVDEFLDYLGRRFSDGTPDFPKKLVSKHRLQPFSPTYFTGDGTLFSYSEENCRAVAQR 759 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 +P P + T S S + ++P + R L + + + Sbjct: 760 LKGAVAVPTFITEPLPEPPDELLTVSLSALLYFFDNPARYFVRTRLGIR-LDELPPPLED 818 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKIS 864 + + + + + + ++ + LPP + Sbjct: 819 REPFAI--DSLDAYRLREEMLDLALAGREPRETFAVARARGILPPARQGELLFRGLGDGV 876 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 + + P + + +TG Sbjct: 877 EDLAAQIRALTGGRSPLD---PLPVDLALGPYRITG 909 >gi|310820607|ref|YP_003952965.1| hypothetical protein STAUR_3346 [Stigmatella aurantiaca DW4/3-1] gi|309393679|gb|ADO71138.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 1071 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 110/931 (11%), Positives = 232/931 (24%), Gaps = 147/931 (15%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 + A+ +++ ++ +L L + Sbjct: 75 ETPFGGFIQEPAFARAALELVLDMKAGRLTPRELQDAAEV-LPQERRSRLRVLARLYDAY 133 Query: 196 TERLVELNASSPVG-YQIALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANH 252 +R+ L + + +L +A +G +++ G P+ L+ +A Sbjct: 134 AKRMEALGLADREDVLRGSLQALKAGRWPSAWEGVDTLVLHGLYDVRPSVLELLLALAEL 193 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 V ++ + + + N + L Sbjct: 194 CEKRQVALRVETPVGGSPVADAALAALFRAFENRGETLGHVDLFKADLT----------- 242 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 L + + ++ + + ++ A +E + Sbjct: 243 --------------FEARPLAELGRHLFSEEVARGALETPVEALRMWSVGSAQDEARQIA 288 Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 L E + + AR + L G+ + + +G PL+ + Sbjct: 289 RDVRRLVAEGVEPGRIAVAWREPGPEARWLAEALGELGVPVRLPSGEPLALAGPVRLALD 348 Query: 433 LLNAIFKLNDFMAIATLVKHPLA-----KFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L +A LV A L + + Sbjct: 349 LPLLAEDGFPAERVAELVASRYAPTLSRGAPEAPATLLTLAAVRDDRLGASRGRGAYDVR 408 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L+ L +A + + E + + + L + Sbjct: 409 LEGLARRMVAARDEKANAVRLLRERCLRLMEECRRIPET-GSALELLGAWWQAVRQLGLM 467 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 S + L L + L + + G ++ L + + + + Sbjct: 468 DSEGELEPLRDGALGLLGLKARARDDAAR-QALGLRVAELERGLRRVEGGPRLSRRTFGR 526 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP------------ 655 + + ++ P S + +L E F L L G+ EG +P Sbjct: 527 WLVDAMRDVSLPPGGPSSGAVEVLDIRELAGRTFGHLFLAGMTEGRFPGHEAPNPLLGDA 586 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEK---YIGQAAHDFEMANGTRHLIYT---RSLRENNIP 709 N L R + + E+ + + F + Sbjct: 587 DRVELNKHLERDVFRLTGGEFEERAPWRLTEDRLLFASVLVAAEEQVSLSFAVAGVGGQE 646 Query: 710 TIASRWLQRLLVLGG--------------------------------------------T 725 + S +L+ + L G Sbjct: 647 QVPSAFLEEVRRLTGRNWEARALMAVPPLDDVLTEPELRQRVALETMASARLRVTEPDMA 706 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQ---------------------PHYKRPKPFPPLE 764 + G+ + R+L + P Sbjct: 707 EPLLRRHFAGEAWYAEARELARVELERLHFFSDPAHRVGPHTGHVVGPGLPEALRETFRF 766 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + R S S + + N + + LK+ ++ D RGT +H ++ E+ ++ Sbjct: 767 DETRPLSASALARFGNCGFQGFLTYGLKVAEPEQPGEEFDARGRGTFWHRVVEEVFRRLR 826 Query: 825 NKN---------TPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEK 873 K E+ FE+ P + + + ++ L E + Sbjct: 827 EKGLLGKGLEEIPEEVLTAAVAEAVRSFEQRHHVGHPELWKLAKERARAMARRILADERR 886 Query: 874 IQSSIE--KIFVNIPA------------KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + +A IH G DR+D G V + DYK Sbjct: 887 GLPFERYMPEDFELKFGPEALRDTWKQVSLAAGQEAIHFEGKIDRLDQRA-GDVGVIDYK 945 Query: 920 TGDNPKKETAQKLI--DPQLSLEAAALKAGS 948 +G K+E +KL+ D QL L A +A Sbjct: 946 SGRLDKRELKEKLLSSDFQLPLYLYAARASG 976 >gi|225025574|ref|ZP_03714766.1| hypothetical protein EIKCOROL_02474 [Eikenella corrodens ATCC 23834] gi|224941612|gb|EEG22821.1| hypothetical protein EIKCOROL_02474 [Eikenella corrodens ATCC 23834] Length = 1081 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 112/894 (12%), Positives = 222/894 (24%), Gaps = 97/894 (10%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 LA I V ++ + L E +G + + + + L + LNP Sbjct: 30 LAPEEIVVQSQGMRRYLNHYLAERSGIAANL--NFSLPAALSWQLTRRFLPDAPRLNPFA 87 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + R L + L + L L S A A LA LAD+ D Sbjct: 88 PEVLRWRLL--------SLLENADSALPAVLQGYLKSSTAAAYHLAGRLADVFDQYLVYR 139 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHL 222 W W + L A + W L L A +PV ++ A L Sbjct: 140 PHW----------LAQWEQGKLNGLG-ADEAWQAALWRTLAADTPVAHRAAQHERLLAAL 188 Query: 223 MKGT-KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + G + P L+ +A H + + I ++ Sbjct: 189 NPARLPQRYLAFGISTLAPVYLDLLQALAEHTDVHLFAVNPSQQYWGDI--QSPKRLAAQ 246 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + HP L R+ RL + M + + S P ++ Sbjct: 247 AEPAAEEAGHPL-----LSSLGKQGRDFFDRLAVSTRAMEQVELFPAPSESPSLLQHLQA 301 Query: 342 TDILENKIPNIQKCFSDVALI-EADNEREEAISIAIALRMSL----DENKKKSALITADR 396 L +I A + E + L L + A++T Sbjct: 302 DIQLLRLPEKGSAQMDGSIVIQAAHSPLRELQILKEHLLRRLADNPELQPHHIAVLTPAV 361 Query: 397 NLARRVKLELTRFGINIDISAGIPLST------TLHSSILTSLLNAIFKLNDFMAIATLV 450 + + ++ + L+ + + + L+ Sbjct: 362 EDYLPFIHAVFGEAAPGSRALPYSVADVRLSRSQPLMLLAEQLIALMQSRFETERLLPLL 421 Query: 451 KHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + + ++L R+ L + + + + + AT+++ Sbjct: 422 DAQAVRRHWQIDETDAEFLRRSVAELNVHWGADAEMRAEHSGSGKVFTWQQATERSVLGW 481 Query: 506 PHW------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + A + L + + SI W + Sbjct: 482 LLPEGEGTLWQGVHPWPADFARQPAQAAWFVL--LGKLREHHRRWQSPASIEGWIERFRA 539 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L + D + +++ + L++ + G + R + Sbjct: 540 LLADAAGDTPDEADQAAWQQISQALAAWQEEAALAGYTAALPPDNACQHLRRFFGQSS-- 597 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + R L FDT+ L GLN+G +P+ T F ++ Sbjct: 598 EAAFLRGGITFCSMVPMRSLPFDTVCLLGLNDGKYPRQTPAPAFDLIARHPQSGDRSRRD 657 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + HL + R++ + S L L+ + Sbjct: 658 DDRYL-FLESLLSARSHLYLSYIGRDHLKDEAQAPSPLLSELIDTLAQMAGQSSADFAAA 716 Query: 738 YLDW----------------------------------TRKLDYTTKQPHYKRPKP---- 759 ++ R+ P Sbjct: 717 HVRQHPLQAFSTRYFVPQQDGESSAELSENGLSGSLSGLRQDYAQALNQPAAEAAPFIGD 776 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 P A T S ++P + RR L+ + + + + Sbjct: 777 TLPEAAGEPTVSLDSFLNFWSNPVRHWLRRALQWKGPYADRPADSAEPYAIEHTDEVKQR 836 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 K DS L + R ++ L + Sbjct: 837 YLDARRHREDFAQTEAKLQADSLLPAGLLGEILQEPERTAAKQLDSELLASPRE 890 >gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15] gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15] Length = 1203 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 97/975 (9%), Positives = 236/975 (24%), Gaps = 126/975 (12%) Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPE 133 LP +++ V+ + S V+ + L+LA L + P Sbjct: 293 LPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLA------LRALFTEGGEGTPA 346 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 + + + L + L +++ + E ++ + A + + Sbjct: 347 TWPAKTSGLKSREDLREAL--LLEQAKLE----AAREQVRAARVAEDTQNALLLAGLYIE 400 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARL 245 A E + I++ + + P + Sbjct: 401 RHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEI 460 Query: 246 MSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--- 289 + + + + D + + Sbjct: 461 LRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEA 520 Query: 290 -------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + +D L + + + + R + Sbjct: 521 VGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVD 580 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------------RMSL 382 ++ +K + A+ EAI+ R Sbjct: 581 LWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRA 640 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 L+ + L + L R G+ + + + LS+ + L +L I +D Sbjct: 641 AHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDD 700 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + +A L+K P G + Y L + R ++ + ++++ +A + Sbjct: 701 DLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGR 760 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + L D + + + ++ + Sbjct: 761 RRQPFEFYAGWLGLTDAD-------------------GRSHRAKVLTRLGAEAEEALDEF 801 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L V E R + +L + K G+ + + Sbjct: 802 LAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVM------------TAHGS 849 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 K ++ +F+ T R L++ +W + + +S + L+ ++ Sbjct: 850 KGLEAPIVFLPETTVKRGAGGSPLLVTEDGALLWCASGKNDCAVSAKARK---LREDKES 906 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCY 738 + R + + D ++ G Sbjct: 907 QEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAFAHPDIAPGVRTIGDGE 966 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + R P + ++ Sbjct: 967 TAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTARVPAPSP 1026 Query: 799 FKK--DPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDI 854 + R RG L H ++ L + ++ ++ + E ++ Sbjct: 1027 LARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAERDLTDTQRTEMASAAFEV 1086 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + F + + V + A G+ ++G DR+ ++ V Sbjct: 1087 LEDARFAAV-----------FGPNSRAEVALAGTSAHLPQGLAVSGRVDRL-VVDDARVL 1134 Query: 915 ITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYKT A Q+++ A L+ R V K+ Sbjct: 1135 VVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREV----FPGRTVEAALVW--TDGPKLM 1188 Query: 973 CITNDKKKYSADELS 987 + + L+ Sbjct: 1189 PVPEKVMALALARLA 1203 >gi|329911424|ref|ZP_08275524.1| hypothetical protein IMCC9480_456 [Oxalobacteraceae bacterium IMCC9480] gi|327545901|gb|EGF31005.1| hypothetical protein IMCC9480_456 [Oxalobacteraceae bacterium IMCC9480] Length = 269 Score = 119 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 81/272 (29%), Gaps = 21/272 (7%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826 S S LI PY +A R+L L+ I P++ D G H I+ + Sbjct: 13 KLSASGYNSLIACPYQFFATRMLGLNAIDELSDLPEKRDYGDWLHQILAQYHATVSAGQV 72 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-SIEKIFVNI 885 + L+ + + F +E + + + K+ ++L + + + + Sbjct: 73 PLAQRAALLASVSEQIFRQELARNAAALGYYVRWQKVMPAYLHWAAEREEQGWQFVIGEQ 132 Query: 886 PAK--MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-QKLIDPQLSLEAA 942 + ++ I L G DRID G + DYKT ++ D QL Sbjct: 133 QMERDLSWPGGAIRLHGRVDRIDEHADGTRAVLDYKTKAVQALRDRFKQTEDHQLPFYGL 192 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 + ++ Y+ L+ + E I+ + Sbjct: 193 ---------LSTTPMSAGHYVALELTGSKTGDVAAPDYALWQDTLE------HRIIEQMH 237 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLARVAEWR 1034 + + L R W Sbjct: 238 AISTGAALPANGIDTVCQYCDVRGLCRKGAWA 269 >gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] Length = 1152 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 86/818 (10%), Positives = 198/818 (24%), Gaps = 109/818 (13%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPA 241 I K + + N + ++ + I++ + + P Sbjct: 347 IYLKIYADLKKVNNVLDFDDLIERTLHLLQHKGASQWVQYKLDRGIDHILLDEAQDTNPK 406 Query: 242 TARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH-- 291 +++ +A N V D + ++ Sbjct: 407 QWQIIQLLAQEFFAGHSQRTNIRTVFAVGDEKQSIYSFQGAVPENFAENGRMIQKKVQQV 466 Query: 292 --------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL-PPDTSDMRNT 342 YS D L + N + + + Sbjct: 467 EQKFEKIQLNYSFRSTADILKSVDLVFETPENYKGLSAEHVKTVHEPIRVHSPGDVIIWD 526 Query: 343 DILENKIPNIQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDENKKKSAL 391 I + S V ++ R E A +IA L+ L L Sbjct: 527 TISQKTNELPDDWLSTVDHLDTPQIRLAEKIAETIANWLKNGEMLPAKKRLLRASDIMVL 586 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + L + + + + L+ + L +L + + D +++A ++K Sbjct: 587 VRKRDQFVSALSRALKLRHVPVAGADRLQLTAHISVLDLMALARFVLQPQDDLSLACVLK 646 Query: 452 HPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 PL E Y A+ L + + + + + V + Sbjct: 647 SPLFSLSENELYQLAAQRKGSLWESLCTHTSSHASFKTIFDRL-NTYRALVDKMPVFEFY 705 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 S + DK +L + L + + + L+ + ++E Sbjct: 706 SYILNNDKGRQKILARLGTEANEVLDAFMDHTLTIQKTG-----LPGLQAFLEILSINEP 760 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 L + + + ++ + +D Sbjct: 761 EIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD---------------------- 793 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 G+ + L + ++ L+ + Sbjct: 794 -PGSAIWHPKYAPHFLKFFLGDKQTFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYV 852 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT- 748 + + +L+ ++K + W + + Sbjct: 853 GMTRAEDRLIIC---GYSNQKETPNTWLQLVKKALKPHAVSIKGPAEDIAAWRYCITSSC 909 Query: 749 ------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA---------VYARRILKL 793 P P + + S + + + A ++ L Sbjct: 910 STPMYQEIPCDAHHVFPPLPAFFHDKMPTESTLSKPLRPSVAGIIDAKTEFFPNKKHFSL 969 Query: 794 DFIPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + ++ + G H ++ L K + SH+ K Sbjct: 970 SPV--LEEKNTKRTFSIEYGNFIHKLLQHLPNYTPTKRQDYAQFYLNTKA-SHWHKTQRE 1026 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 + IW KI + + + S V + + I ++G DR+ + Sbjct: 1027 NALHHIW-----KILDN--PKLKPLFSRFSHAEVALMGIVKINGKEQIISGQIDRLCIT- 1078 Query: 910 SGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKA 946 V D+KTG P + Q++L L+A Sbjct: 1079 DNSVFFADFKTGLPPENDTDIAQRHLLQMALYQKLLQA 1116 >gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1183 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 94/813 (11%), Positives = 215/813 (26%), Gaps = 78/813 (9%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAG 234 A + + + E + + + + I++ Sbjct: 361 AALVLAERLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVDE 420 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P ++ ++A P + D + + + S T Sbjct: 421 AQDTSPIQWSVIQSLAEDFFSGESARPVVRTLFAVGDEKQSIYSFQGARPERFSEESDRT 480 Query: 287 TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PP 334 S D L+ + N V+ +S P Sbjct: 481 RRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFREPDNSRGLSALGEPVVHRSSRIGHP 540 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RMS 381 D+ E + A E+ A IA ++ + Sbjct: 541 GAVDLWEMVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKER 600 Query: 382 LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L E L+ + L R I + + + L++ + L +L + Sbjct: 601 LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLLP 660 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D +++A ++K PL + + A + R A ++ Sbjct: 661 EDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESVWNHLRRF----AADGTERFRAAVER 716 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + +S + + Q + L T ++ ++ + Sbjct: 717 LELFLRQSRSLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGL 776 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + E +++G+ + + ++A + +D G + Sbjct: 777 QSFISTLELEAPVVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKAF 827 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 L ++ T + + L + + + L+ L + Sbjct: 828 THTHLPKLRLIETDADEPPMPVWVPVSDLANSLTQNDAVRIQMLAEEEYRRLLYVAMTRA 887 Query: 681 IGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + T H++ + +LR+++ A+ + G + +R Sbjct: 888 ADRLVVCGYRGVRLNNDTWHMMISTALRDDHPHVEATTFSSPDGEWPGIKWRVPRVERSF 947 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 +D + + ++ +P PP PR S S +I++ Sbjct: 948 ERIDR-SQERDSVERLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSPLFAEK 1006 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 + ++G L H ++ L + + ++ P Sbjct: 1007 ERSDRSL---EKGRLIHRMLQALPEIPPAERADAAGRYAERAAR-------FWPET---E 1053 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVD 914 R L+ E + + + +E ++G DR+ +L V Sbjct: 1054 RRKLVDSVLKLLDEEGLQAVLSNEAQPEVSIMGTLTLEDRCYAVSGRIDRLAVLAD-RVV 1112 Query: 915 ITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 I DYKT P A QL++ L Sbjct: 1113 ILDYKTNRVPPATEAAIPFAHRAQLAIYREILA 1145 >gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1128 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 86/890 (9%), Positives = 214/890 (24%), Gaps = 98/890 (11%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236 A + + + R + + R E + +++ Sbjct: 239 QRARKAVVPLLEEYVRRKRDAEQLDFGDQVLLAARLAREVPAVAAGERARHRVVLLDEYQ 298 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + A L+ + G V D H W + + + + + Sbjct: 299 DTSYAQLMLLRALFGA--GHPVTAVGDPHQSIYGWRGASAGNLGRFPGHFPRADGTPAAR 356 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + V+ + + + L P ++ Sbjct: 357 LPLATSWRNDEAVLAAANLVAAPLNAAPGAGAVAVLRPRPGAGTGRVRAAFSATVEEEAA 416 Query: 357 SDVALIEADNERE-EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 A + + E +++ + + ++ +A++ R+ ++ L G+ +++ Sbjct: 417 EVAARLAEVWRADSERLAVQRRVPGADPRPRRTAAVLCRKRSQFTVLQRALRDAGLPVEV 476 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L TT + + + L+ + +A L+ + G + A Sbjct: 477 VGLGGLLTTPEVADVVATLHVLHDPARGDHLARLLTGARWRLGARDLAALGAWARHLQHR 536 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITP 533 G + LVL + + S D L + Sbjct: 537 RAGLPPDPHEPGEEPLVLPDEVEAVSLVEALDDLPGAGWSGPDGRSLSPRAHARLSRLAA 596 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 ++ N+ + + + + ++ + ++ FS + Sbjct: 597 VLRRLRNRTHLPVPDLVGEVERALLLDVEVAARPGSSPASARANLDALADAAASFSAGSQ 656 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 A W+D G + + +L S+ L +D + + GL E Sbjct: 657 RPGLGGFLA--WLDAAEVRERGLEQGASEVSTDAVQLLTVHASKGLEWDVVAVPGLVERT 714 Query: 654 WPKNTAKNPFL-----------------------------------SRVMQSDLNLKTAE 678 +P + +P Q L Sbjct: 715 FPASGETDPGWLGGSGALGVLPYPLRGDREGLPRFDVEGAGTQKELDTARQRFLEACGQH 774 Query: 679 KYIGQAAHDFEMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + + + + + + P SR+L+ +L + Sbjct: 775 QLAEERRLAYVAFTRAKEELLLSGAHWDDAAKPREPSRFLREVLEAPRGAVPGLVVVPPA 834 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP-------------- 782 + T P + ++ + + Sbjct: 835 PAPEPGAPNPRTANPQRVVWPVDPLASRRVEVAAGAALVRAAMAERAAGGAAGPEAGGPE 894 Query: 783 --------YAVYARRILKLDFIPHFKKDP------------------DRTDRGTLFHNII 816 A + L L P D + Sbjct: 895 GGAVDEETAAWAEQSRLLLTERATAHDAPGVLLPAHLSASRLVTLAQDPDALALQLRRPV 954 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + + + T L ++ S P ++ + Sbjct: 955 PQEPRPATRRGTAFHAWLEQRFTASSLLDLVDLPGSADEDAADDAELEALQRRFLASEWA 1014 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGFVD--ITDYKTGDNPKKETAQKL 932 + + + V + + + + + G D + + G + D+KTG P+ A + Sbjct: 1015 ARDPVAVEVSVETPVAD--LVVRGRVDAVFAAVGADGRTRWDVVDWKTGRPPEG-EAARA 1071 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 D QL++ A + + V+ F+ + + Sbjct: 1072 RDVQLAVYRLAWSR--WRGVPLEDVSAAFFYASTGETVRPVDLLGAEDLE 1119 >gi|116619174|ref|YP_821330.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter usitatus Ellin6076] gi|116222336|gb|ABJ81045.1| ATP-dependent nuclease subunit B-like protein [Candidatus Solibacter usitatus Ellin6076] Length = 987 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 112/893 (12%), Positives = 238/893 (26%), Gaps = 137/893 (15%) Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVL-------PGLDCHIPTAIWNTITEKSTNITSS 284 +AG G A A + + GA + P L + + + Sbjct: 102 VAGFPGFPRALAETFEELRLNGVGAEQVRGCGESGPDLALLLAAYEGELAARGFADHAAR 161 Query: 285 NTTYSTHPQYSLAK---LLDFLDIKREDVKRLGNV---SNEMYGRSMVISKSFLPPDTSD 338 T + L L + + L + S + P + + Sbjct: 162 VQMARTAVAARFRETAVLAIDLAPRTRSERELVAAILRGARAHLELRPGSGAAEPATSLE 221 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398 + ++ V + E E + IA + + + L+ + Sbjct: 222 SLQRYLFSTDAVPVRDEDGTVEIFSTSGEALECVEIARRIGARGIGFDECAILLRSPERY 281 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V L R GI + G +LL+ + A + Sbjct: 282 QPLVVEALRRAGIPAHCTRGSRRPD-AAGRSFLALLHCAEERLSASRFAEYLSLGQMPES 340 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + + L A+ G ++ + R + E Sbjct: 341 EEPRTPAAWERLLVDAAVIGGAARWETRLRGLREDFERRYAAAEEEEERARWRQRIDRLE 400 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 +++ + L +W + + D R L L Sbjct: 401 ALRAFAMPVIERLAALPERANWG----------EWIETLTALAEFTLNDPTRVLELLEEL 450 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E + + E + ++ + P+ + +++ G E+R Sbjct: 451 EPMREI-------------GPVGLGEVLLVLGPRFQQLSSAPEGARYGKVWVGGIEEARG 497 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------------KYIGQA 684 + F + + G+NEG++P+ A++P L + L + ++ + Sbjct: 498 MAFRAVYVPGVNEGLFPRPPAEDPLLLERQREALGIALRAEDTELLGIAAACATEHFALS 557 Query: 685 AHDFEMANGTRHLIYTRSLR------------ENNIPTIASRWLQRLLVLGGTDFFDNLK 732 ++ G + + S R+ + D + Sbjct: 558 YSRLDLLTGRVRVPSFYAFAAHRAAGGSEIDVHEFEKRARSATGTRIGWPAPENAADAID 617 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY---------------------- 770 + + + L A+ + Sbjct: 618 DAEFDLATLAPLTKGSGQYLKSLPGRAVESLRARWMRWHAPWKAADGLVVDEIGDDALKR 677 Query: 771 --------SFSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELI 820 S S ++Q PY R IL L + + + D RG LFH + EL+ Sbjct: 678 YRLGARAWSPSTLQQYARCPYRFALRGILGLRAVENPTGIQRMDPAQRGELFHRVQFELL 737 Query: 821 KKRINKNT--------PEINHLMKQIIDSHFE--KENLPPHIDIIWRHLFHKI---SHSF 867 + ++ + +++ + L P I IWR I + Sbjct: 738 RDLASRELLPVSPATLAGALDRLDAVLEDVAAKAEAELAPAIPQIWRGEVQAIRADLRGW 797 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESI--------------GIHLTGFADRIDLLKSGFV 913 L+ + + F + + + G L G D ++ SG + Sbjct: 798 LQEKALRDADWTPQFYELSFGLKDPAGRDPRSRKDAVEVEGGYRLQGSIDLVERHPSGVL 857 Query: 914 DITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 + D+KTG P+ + T Q L A A +A L+Y + Q ++ Sbjct: 858 RVVDHKTGRVPEPKPDTVGGGEALQPLLYALAAEAIVGE---PVSSGRLYYATIAQNYRT 914 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + + + + + +++G P + +Y Sbjct: 915 IDVPLNDWTRRRMQHVLEIIDG------AMRDGFLP----AAPRKDGCKGCDY 957 >gi|257456391|ref|ZP_05621587.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] gi|257446051|gb|EEV21098.1| conserved hypothetical protein [Treponema vincentii ATCC 35580] Length = 919 Score = 118 bits (295), Expect = 5e-24, Method: Composition-based stats. Identities = 100/810 (12%), Positives = 209/810 (25%), Gaps = 82/810 (10%) Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDF-LDIKREDVKRLGNVSNEMYGRS---MVISKSF 331 EK + + Y L K L+ R + + + Sbjct: 129 EKRAAQHKTGHDAESADLYILKKAYTEFLETHRLFEPSWAGAEFIPHAQQYILLYPELME 188 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKS 389 + D+ + +P LI+ REE S +A+ L Sbjct: 189 DFDEYRDLLEERPELSVLPAPAFNAGTTPLIQFGTMREEIRSTVLAVEQLLTSGVPADDI 248 Query: 390 AL-ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 AL I + +K E I + G L + T L + + F ++ Sbjct: 249 ALSIAGIEEVVPYLKREFALRNIPAEFRLGFKLGEQQAGLLFTLLEQCVQEHYSFGSLKP 308 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 L+ +P + P++ A+ ++ N + + A + + PH Sbjct: 309 LLLNPHIPWKHPQQ-----IQAVINFGIKNNCLVSWKDGEHYKNIWKEAFKLPIPYNPHS 363 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + +KE A + ++ LV KT + L Sbjct: 364 SVEAEQAEKEQAKDWLLPFMKAAERLVQAKTFSEVQRQYILFR------TQYLNIDGFSF 417 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + L+ L + T + + + Sbjct: 418 EDNAVIGRCVTLMQELTQLEQDFADCLPAQP------YRFFTAQLA-REIYVPQNTGRAV 470 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK---YIGQAA 685 I + F + N+ K PFL + + L + + + A Sbjct: 471 SIFPFRVAAATPFAHHFVLNCNQKASRVIYQKLPFLRKDKRDVLGVVEKDATQAFFAVYA 530 Query: 686 HDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL---- 739 + + I S F + L Sbjct: 531 EYGAVRFSASEQTFAGFTVSNGIFIALAPSPDFDESDSFLQEYHFFKREYDSPAALYSVQ 590 Query: 740 ----DWTRKLDYTTKQPHYKRP-----------KPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + P S S + P Sbjct: 591 KTGFEQFASIKKERGFSFLTEPFNGSLPVLSEKLKAGHYTDGAFRISQSGLHLFSGCPAQ 650 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM---KQIIDS 841 + L +D + + G + H I+ L ++ + I+ + ++ +S Sbjct: 651 WFLSSALSIDEEDTDAELFNPRYIGIICHRILERLYQRIRETDRVFISAHLADYREWAES 710 Query: 842 HFEK---------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 F + L + K L + + + ++ Sbjct: 711 IFNETVHSQTDFRGPLAAPFIESIKKRSLKSVDFVLTFDAEKLDGYAPYLME--GELQHR 768 Query: 893 SIGIHLTGFADRID-LLKSGFVDITDYKTGDNPKKETA--QKLIDPQLSLEAAALKAGSF 949 + I G DRI G I DYKTG P + + D Q+ + + Sbjct: 769 NGDILYHGLVDRIAYQEAEGRAVIIDYKTGKVPSATDYTSEAMRDFQMPMYIFLAE---- 824 Query: 950 SQIDCRKVANLFYIRLKQ--------KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 ++V + F++ + + ++ + + + +E E S++ ++I Sbjct: 825 -NRLKQEVLHAFFLGITKEERRYIVNDKEVIPQDSSRSSKTREEF-EPSIQAFLQIAQEY 882 Query: 1002 QN--GEQPFISHLRLSEKSNIQSEYDHLAR 1029 G + F + + + + + R Sbjct: 883 AQQVGMEDFRKPAAVQWQDCMGCPFHTICR 912 >gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614] gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614] Length = 1073 Score = 118 bits (295), Expect = 5e-24, Method: Composition-based stats. Identities = 109/1045 (10%), Positives = 260/1045 (24%), Gaps = 151/1045 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 V T +A ELR + + ++ GD + + + Sbjct: 67 EVLGLTFTTKAASELRQRIRQALKAAGALEEPEEAPGDGQSDVLEPTVATYNAYAAGLLT 126 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA--KNLADIIDIIETEE 163 L + + + +NL + + Sbjct: 127 DHGLRIGHEPDTRVITDAARYQLGARAVDRYTGDVRYLSDHPETVIQNLLALDSAMSEHL 186 Query: 164 KKWEDLHALKNEKYGMWWLLAADF-------------------------LKIASKYWTER 198 + + + E + A+ L + + Sbjct: 187 VGPDAVREIDTEACRGFEAALAEEVAGKNRVTYREAIEKAISAIDRRGELLGLVEAYRRL 246 Query: 199 LVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 +L ++A + + L + +++ + A A ++S + + Sbjct: 247 KRDLGLMDFSDQIELGARLASEQPDVGELERSRFKVVLLDEYQDTSVAQAVMLSRLFS-- 304 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 G V D + W + + + + L ++ Sbjct: 305 GGHPVTAVGDPNQAIYGWRGASVSNILNFADTFPAAGSRAVPTYPLTVNRRSDARILEVA 364 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 ++ +Y +E + + V + +E Sbjct: 365 NRLAAPLYE------------------KYGQVEPLVAKPEAETGTVTTQVFETHADELAW 406 Query: 374 IAIALRMSLDENKKK-----SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + A++ + + ++T D A V LT G+ ++I L + Sbjct: 407 LVGAVKEAHEGLPADGGWAQIGVLTRDNAHAEDVFDALTSAGVPVEIVGLSGLLRLPEVA 466 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + L + + A+ TL+ P ++ + L +A R + + Sbjct: 467 EIVATLTLLHDVTANAALLTLLTGP--RWAIGPRDLRLLGRRALEIAGRHGRGADAASIT 524 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 L+ E L + L + G Sbjct: 525 DQLLEIADGIDPAELPSLDDALADPGEHAYSPEAL-----ERFGLLSAELRMLRTYVGEP 579 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ T +V L + ++ + A+ Sbjct: 580 LLDIVRRIIDTSGTDVELGSAVSPAAAARRDNLDLFVKAVAEFQAVDGDVTLPALLAYLT 639 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----- 663 ++ ++ +L ++ L +D++ L G+ E +P N ++ + Sbjct: 640 AEDDQGNGLDVATPTEADSVKLLTVHRAKGLEWDSVFLVGVCETRFPSNRSRTLWTSSPA 699 Query: 664 -LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH----------LIYTRSLRENNIPTIA 712 L ++ D +AA D A H + +TR+ R ++ + Sbjct: 700 ILPAPLRGDAGDLPQLAGHDKAALDAYRAATRDHDAEEELRLGYVAFTRAARRLSVTS-- 757 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 W R G + + ++ + + + L K P ++P + Sbjct: 758 YLWSPRATPFGPSAYQQVVRDQLHDWAEPPTWLARPEKGDPNPYDAVDP---SRPWPATG 814 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL--FHNIITELI-KKRINKNTP 829 + + + + A R ++ D + + + + L+ + R +++T Sbjct: 815 TGREAALR----IEAARRVREVDAAAVDAGLDMIETARVAEWDAELERLLAEARRDRSTD 870 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHL--------FHKISHSFLEHEEKIQSS---- 877 L + + + P + F E Sbjct: 871 LAVPLPPSLSATALARLREDPETFARELARPMPRPPSSAARFGTRFHAWVEARFGQQDLF 930 Query: 878 ---------------------------------IEKIFVNIPAKMAI---ESIGIHLTGF 901 V P + + G + G Sbjct: 931 DYGDLPGRADAGIDDDSDLKELIATFEAGPFATRTPHQVEAPFALVLRHPGGPGQVVRGR 990 Query: 902 ADRI--DLLKSG-FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 D + + G + D+KT + QL+L A + +V Sbjct: 991 IDAVYAESTPEGDGFLVVDWKTNRAATADP------LQLALYRLAWAE--LHDLPLERVR 1042 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSA 983 FY + D+ A Sbjct: 1043 AAFYYVRTGEVVEPPDLPDRAALEA 1067 >gi|268319454|ref|YP_003293110.1| ATP-dependent nuclease subunit B [Lactobacillus johnsonii FI9785] gi|262397829|emb|CAX66843.1| ATP-dependent nuclease subunit B [Lactobacillus johnsonii FI9785] Length = 1158 Score = 118 bits (295), Expect = 5e-24, Method: Composition-based stats. Identities = 112/1030 (10%), Positives = 255/1030 (24%), Gaps = 168/1030 (16%) Query: 46 SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V I VP RA+ +L L I S + + Sbjct: 32 DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 L + + ++ L +++ + +L + L + + Sbjct: 87 LPQILDDAASVMLLEQIVKDHQGELKLFQNQTQVT---------------SGALRQMYEA 131 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 I + +L + +K L+I + ERL E A+ L+ Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + + ++ + K+ Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N Y + + + L + + + S Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395 T + ++ + ++AD+ EA +A + + + + ++ + Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L + I + ++ +L + + L+K L Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVVVENLQQIFKRGFQTDNVIALMKTQL 402 Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + + LE L + + + Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT------KSLKSFVDADVIALDKSEKE 456 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHR 570 EE L +D + + L + + + + + + D Sbjct: 457 VEELDRLREYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNHVAKRLESWRKEANDTGD 516 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 E+ TL+ L + + K + ++ D++ + I Sbjct: 517 LQLAQQPEQVWSTLTDLLKDYLLVAT--KFSVDQFFDLLISGFSEANFSQIPSTLDAVNI 574 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIG 682 + + + + G P+ F S LN L+ +K Sbjct: 575 SELGMVQGQGYKRVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKINN 634 Query: 683 QAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-- 736 + ++ + + + + N S + ++LL L D F Sbjct: 635 LDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRADEFSQHDLPQNNG 694 Query: 737 ----------------------CYLDWTRKLDYTTK-----------------QPHYKRP 757 D LD T + P P Sbjct: 695 DVLTFITNPEASLGYLTYLKNKAATDIESLLDMTEEKIGEIAKNVLEGSSFKNIPQDLSP 754 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 L S S+++ + + + L L F+ + D G +H Sbjct: 755 DLAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFD 812 Query: 818 ELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHS 866 L+K+ T E + + ++ + L + H + + + Sbjct: 813 YLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTAN 872 Query: 867 FLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK- 909 + + + + + + + L G DR+DL + Sbjct: 873 VAHYWHSNVNKTIFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQV 932 Query: 910 SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANL 960 + V + DYK+ + + Q+ LK + F+Q V Sbjct: 933 NDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLGA 988 Query: 961 FYIRLKQKFK 970 FY + + Sbjct: 989 FYQNITSSLE 998 >gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1162 Score = 118 bits (295), Expect = 5e-24, Method: Composition-based stats. Identities = 105/828 (12%), Positives = 207/828 (25%), Gaps = 102/828 (12%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227 ++ + + A + S+ W + E + + + + T Sbjct: 335 EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394 Query: 228 GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + ++S +A + D + + Sbjct: 395 DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDPQ 454 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + L R L V + + Sbjct: 455 AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385 + + + E +N EE + +AI L ++ Sbjct: 515 QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574 Query: 386 ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + L+ LA + L I + + L+ L Sbjct: 575 LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 S L S + + + +D + +A L+ PL + Y AK A + + S + Sbjct: 635 SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 ++ + ++ T + LS + + LL + P+ Sbjct: 695 TWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 S+ T L WF+ + S T + + + + Sbjct: 753 ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ T P I+ L N + + +L Sbjct: 797 APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 +N K A+ + A L+ T L T Sbjct: 846 FGDIINEKKAKDLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785 ++ + K + +P P EA P + ++ P Sbjct: 906 IGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPIFPKEAMPSWINNEIPEEPKPAYPLRP 965 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842 P RGTL H + L + + ++ D+ Sbjct: 966 SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + D + ++ I EK P + ++G Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070 Query: 903 DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 DR ID K V I D+KTG KE + QL+ AL+ Sbjct: 1071 DRLWIDRNK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117 >gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1150 Score = 118 bits (295), Expect = 6e-24, Method: Composition-based stats. Identities = 109/1069 (10%), Positives = 267/1069 (24%), Gaps = 136/1069 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVV---EEKFTADLLLSYNLN 100 + T++A EL + + + LP G+ + ++ + L Sbjct: 91 QILGLTFTRKATAELAERVRKRLEQLRATEQLPEELLDGEPTVSTYNAYAGRIVADHALR 150 Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---- 156 V RLL + I + + + + + L+ +AD + Sbjct: 151 EAVEPTSRLLSEGQAWQIAARVVGEYDGPMD-LITVGADTVTRRVLELSGQIADHLTTTE 209 Query: 157 -----DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 + + L + L + + A Sbjct: 210 QVRGIGRWLRAAVDALPRKPAVPTRNLLNAQLRREQLLPLVEGYEHAKHVREAMDFGDQV 269 Query: 212 IALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 R E + +G +++ + A L+ + G V D Sbjct: 270 SLAARIAQNHPEVGLIERGRFRVVLLDEYQDTSHAQLVLLRALFG--EGHAVTAVGDPCQ 327 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF-------LDIKREDVKRLGNVSNE 319 W + ++ + S+ +L L++ + + L S E Sbjct: 328 SIYGWRGAIAANLANFPNDFPAAPGRAASVRRLATSFRNGERILEVAKHISEPLRAESAE 387 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL- 378 + ++ + + E + Q L A A + L Sbjct: 388 VPVLYPGPARRGRGAVRTGLFIGQREEARWIAEQVAG---YLRAAPGRAGSATTAPDGLP 444 Query: 379 --------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 + A++ R+ ++ L I +++ L + Sbjct: 445 WPPGESGGAADGGVSPGDVAVLCRKRSQFPAIREALEELDIPVEVVGLGGLMMVPEVRDI 504 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 + L + + +A L+ P + G + A+ A R + + Sbjct: 505 IATLRVVHDASAGNELARLLTGPRWRIGPRDLAALGARAAELARQTRRDLTGPEPDQSAE 564 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 D + + + +D A + + L + G Sbjct: 565 --DDILRRTVLDLTAESGSLVDAVDDPGPAERYSATAYERLGRLAEELRSLRKLVGQPLP 622 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWIDII 609 T+ ++ + L + + + + + ++ Sbjct: 623 DLVTETERMLGLDIEVGARSGRDPLSARADLDAFVDHAVRFAGSSEDPTLGSFLSYLRAA 682 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN-------- 661 + G ++ S T+ ++ S+ L + +++ G++ G + + Sbjct: 683 SERESGLAPGERVGGSDTVKLMTVHASKGLQWPVVVVPGVSGGKYAPLFPTSLSEGDMWI 742 Query: 662 ---PFLSRVMQ-----------------SDLNLKTAEKYIGQAAHDFEMANGTRHLIYT- 700 L ++ E+++ + +A Sbjct: 743 KGEHLLPYRLRGDRQNLPELLAVDKKGIEAFKEAERERHLLEERRLAYVAVTRASFALLC 802 Query: 701 ---RSLRENNIPTIASRWLQ--RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + S +L+ RL GG + + R + + D T + Sbjct: 803 TGHWWGTDAASERGPSPFLEEIRLACEGGAGEVAHWEPRPDPDDNPYEEEDDGTAVWPPQ 862 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL---- 811 P E + + I + A+ R +L + G Sbjct: 863 EDDGSGPPEEGAEPDRPRDRRAQIAEGAAMVERARARLLAGEADPAEEAAPPPGLRRRIG 922 Query: 812 ----------------------------FHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 ++ + ++ + +++ + Sbjct: 923 GWERDTELLLAHRRAEGPGSGDGTVQVELPAHLSVSSMVWLARDPSALARQIRRPLPRPP 982 Query: 844 EKENLPPHIDIIWRHLF----------------------HKISHSFLEHEEKIQSSIEKI 881 W ++ EE S + Sbjct: 983 APHTRRGTAFHAWLEQRFGQRAALLDELPGAADETAGQDEDLADLQSRFEESEWGSRVPV 1042 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLK-SGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 V +P + I + G D + SG D+ D+KTG P ++ + QL+ Sbjct: 1043 EVEVPFETVIGDR--LVRGRMDAVFHDPASGRYDVVDWKTGSPPGNGPERRAVGVQLAAY 1100 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 A + ++ A Y+R + + + + + + + Sbjct: 1101 RLAWADLAGVSLEEVS-AAFHYVRAGLTVRPADLLDAEGLAALIDAVPE 1148 >gi|326334226|ref|ZP_08200449.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1] gi|325948017|gb|EGD40134.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1] Length = 293 Score = 118 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 89/295 (30%), Gaps = 25/295 (8%) Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + L T RP+ P T S S ++ ++ P + R Sbjct: 5 RIALAADPSTWWGLRAPTYASAAVRPEDRP------ITLSASALEAILTCPAQWFLAREA 58 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + G + H I +L + ++ T E + E Sbjct: 59 GGAVTDSSSQG-----FGKVVHAIAEQLARGDLDAATVEDLMPFVDEVWGRLEFRTPWSA 113 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE---SIGIHLTGFADRIDLL 908 ++ FL + I + + L G+ADR++L Sbjct: 114 AREREAVR--EVLARFLTWHR-RPGARTVIGFEEQLTAKVSLPSGETVRLNGYADRLELD 170 Query: 909 KSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV-ANLFYIRLK 966 +SG + + D KTG P + ++ QL L A++ G+ + + I+L+ Sbjct: 171 ESGRIVVVDLKTGKYPPTAQEVKEHG--QLGLYQLAVEHGAAASLAEGATSGGAELIQLR 228 Query: 967 QKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + + + + + L + V ++ E F++ Sbjct: 229 HPAGSGSELPKVQVQAPE--PPEIINQLEKAVATVRAEE--FVARPGKQCDRCQF 279 >gi|15803341|ref|NP_289374.1| exonuclease V subunit gamma [Escherichia coli O157:H7 EDL933] gi|15832933|ref|NP_311706.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. Sakai] gi|168764651|ref|ZP_02789658.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4501] gi|217327056|ref|ZP_03443139.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. TW14588] gi|12517307|gb|AAG57933.1|AE005511_1 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Escherichia coli O157:H7 str. EDL933] gi|13363151|dbj|BAB37102.1| DNA helicase RecC [Escherichia coli O157:H7 str. Sakai] gi|189365393|gb|EDU83809.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4501] gi|209761100|gb|ACI78862.1| DNA helicase RecC [Escherichia coli] gi|217319423|gb|EEC27848.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. TW14588] gi|320189153|gb|EFW63812.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. EC1212] gi|326339108|gb|EGD62923.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. 1044] Length = 1122 Score = 118 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 115/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ H Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDHELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + + ++ ++ + D + + +D E + + Sbjct: 596 NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|259502071|ref|ZP_05744973.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] gi|259169984|gb|EEW54479.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] Length = 1250 Score = 118 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 121/1076 (11%), Positives = 255/1076 (23%), Gaps = 188/1076 (17%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + SL + L P +S I + +A+++ L Sbjct: 74 QVLSLSRLAWYLLRDTPALQR---PRLSKIGLTMLVAKVVQDHAADL------------- 117 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW-------WLLAADFLK 189 L S A + L D + + +DL AL + WL ++ Sbjct: 118 QLFASEAQQPGFIQKLTDQLTELANANVSADDLTALLQQAQHDENAGINQAWLAKMHDVE 177 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + ER+ + + + I P +++ + Sbjct: 178 LIYHAYEERV--QGRFLGNTELYQQLAQFLQSQPAAKQMHFFIDRFAQFTPGEQQVVDAM 235 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + V LD P + + +L DF ++ Sbjct: 236 ILNGASTTVSFVLDRGYPDQSHPDQSALPGSTDLFYPAAM-----QYHRLWDFARQHPQE 290 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 V + NV R + L+ + Q +D+ I N R Sbjct: 291 VDLVPNVLVATKDRVSPTLTAVDRFF--ADYIKKPLDLTSSDQQVDPADLQFITTVNRRT 348 Query: 370 EAISIAIALRMSLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTL 425 E +A + + + +++ + + + I + + Sbjct: 349 ELERVATMIHQLVATKGYRYRDFLVLSRHLDKYQTLLAPIFAAHQIPVFNDHERRMDNHP 408 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVK-------HPLAKFGFPEKYLSRAKNALELVALRG 478 ++LT+L N I L+K +P + Sbjct: 409 LVTLLTALFNLPLYRYRTADIMQLLKTWLLAEYNPETGDYQALDQDVVFATENWCLKRAI 468 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA-------------VLLVD 525 + +T + + + L Sbjct: 469 EGQRAWVDAASPFWQVGDSTAAPVNQLQEQLEHVRTFVADRIITFFADLKTVTTGRELAA 528 Query: 526 HILQCI--TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW----FEE 579 Q + +V T+ + ++ D + C + L + Sbjct: 529 RTYQFLVDNGVVKRLTDWQKYQSSRNL-DLARQPQQVWGTFCQILDEYVQLLGDTPVNAD 587 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + FS++++ G A + + +++ ET + + +F++G+ + + Sbjct: 588 NFTATLTNFSELLQAGFA-AAQYSQIPATLDQVVVSETGIVQNQDRKIVFLIGSTDDVMP 646 Query: 640 NF------------DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT----------- 676 + L + ++ + + T Sbjct: 647 EVQQQESLLTDQDKELLANYLDPATQYLPAGPRDQLRTEPFLHYSGMLTGTEKLIMMAPT 706 Query: 677 ---------AEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGGT 725 Y+ A F L+ + + R + + + L +L+ + Sbjct: 707 ASDDDQPLTPSAYLTDMARYFAQPVTAVPLVASPAGQQRVPDYVSTPAATLSQLVQVERQ 766 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY--------------- 770 D K W + R P + R Sbjct: 767 ARNDQPKGPIVLAPGWQAVRQALVDEIARLRQAPQAADQRAGRELAARLKLVAAGFNYHN 826 Query: 771 --------------------------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 S S+++ +PY + + L L D Sbjct: 827 QVDDLGEQLAAALYLRHKHDQQILYSSISQLQDYYVNPYEYFLKYGLGLKKRDQLTMSVD 886 Query: 805 RTDRGTLFHNIITELIKKRINK------NTPEINHLMKQIIDSHFEKENLP--------- 849 GT FH + + E + I Sbjct: 887 --RIGTFFHKAMEWFVSAVNADQQLSFAGLAENPAQLNAFITRALAAAKDDQPDLAILTA 944 Query: 850 ----PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--------------KMAI 891 + + L + K + + I + + Sbjct: 945 SSHQAAFQYQQLTGIVRTMLTILCWQAKYTA-ARPLDTEIRFGRLGAAREDDLQPLEYPL 1003 Query: 892 ESIG--IHLTGFADRIDLLK-SGF--VDITDYKTG-DNPKKETAQKLIDPQLSLEAAA-- 943 + ++L G DRID L + + DYK+G + TA + QL A Sbjct: 1004 QPANTHVYLRGRIDRIDQLSQDNKDYLTVVDYKSGNRSFDLTTAYYGLSLQLLAYLNAIS 1063 Query: 944 -----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 L A ++A Y+ L + + K L Sbjct: 1064 SNRQQLPAQLNPAAADLQLAGALYLHLSNPVINAAKLKAGTDLDTVRMQQHQYKGL 1119 >gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1] gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1] Length = 1211 Score = 118 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 83/858 (9%), Positives = 203/858 (23%), Gaps = 120/858 (13%) Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKG 228 + L +T + + + + Sbjct: 341 EANSAHYALALMRAFDDVLAAYTAEKDRRDTLDFPDVIETTLEFLRANDAVTERLREQFA 400 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKSTNITSSN- 285 +++ + P L+ + G V D + + Sbjct: 401 AVMVDEFQDTDPRQWELVKLLTGVDEGTASNVFLVGDEKQSIYGFRGADVTTFGNARREL 460 Query: 286 ----------------------------TTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 P L +L ++L D Sbjct: 461 QTVNEARGVDDVPDGEAESPTALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAP 520 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + + S + A + EA + A+A Sbjct: 521 PQELTTQRDRIEDIEGLTGSVEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALA 580 Query: 378 LRMSL-----------------DENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 R++ + +A++ R R + L + I + G+ Sbjct: 581 ARLTHLFDDPPQVQDPDTGVHREATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGVG 640 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 T LT+LL + D +++ +++ PL F + A+ Sbjct: 641 FYDTPEVQALTNLLRVLGDPEDDVSLYGVLRSPLFGFADDRLAPAVAEAD---------- 690 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 L ++A + S + + + + + I + Sbjct: 691 --SVWDALAETDDPQLADAFDLLSTWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASV 748 Query: 541 KNSTCGNLSISDWTKLTVTCLQN-----VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 G +I++ K + E + + + E Sbjct: 749 SADERGRQAIANVEKFRDQVRTWSENGVHTAAGLLHRIDRQAEIDPREGEADIPGDAEGV 808 Query: 596 SCIKANAIEWIDI----ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + ++ + ++ + L ++ + ++ + + + G + Sbjct: 809 RIMTIHSAKGLEFPIVTVPDLGSDLNFGRSVDDHGYVRLVDGTD----DAPPVPAVGGPD 864 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 + K + + AE + TR + + ++ Sbjct: 865 PGDAFSIEKTAVHEYADRQSRPQERAESK----RLLYVACTRTRDHLLLCGTHDIDVDES 920 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH--------YKRPKPFPPL 763 + L D + + + + + +RP Sbjct: 921 GAIELGEPAAFDDADRWRDWVQPALLDGALVAEAIRDGQARGEMDEASYTVRRPPRPVDW 980 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRIL---------------KLDFIPHFKKDPDRTDR 808 + + + P A+RI T Sbjct: 981 HTDDDAVDPALEISIPSPPSLAPAKRIAATTLVNAVADASTDGHSYSQREESAGLSPTTF 1040 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 GT+ H I + + H + ++ + ++ +D + F+ Sbjct: 1041 GTVVHRINE---LRPPRDEWSTLIHRLSRMTGEVPTEADVREAVDH------AADAVEFV 1091 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKK 926 +H + S ++++ I+ + G+ DR+ ++ I DYKT Sbjct: 1092 DH-IESGSQLQEVHDEYSVVARIDES--RIAGYIDRLLVMPD-AFHIIDYKTNDLSATTS 1147 Query: 927 ETAQKLIDPQLSLEAAAL 944 + PQ+ A AL Sbjct: 1148 DELADHYRPQMLAYALAL 1165 >gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1162 Score = 118 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 105/828 (12%), Positives = 205/828 (24%), Gaps = 102/828 (12%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227 ++ + + A + S+ W + E + + + + T Sbjct: 335 EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394 Query: 228 GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + ++S +A + D + + Sbjct: 395 DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVETSRSIFAVGDFKQAIYGFQGTDPQ 454 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + L R L V + + Sbjct: 455 AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385 + + + E +N EE + +AI L ++ Sbjct: 515 QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574 Query: 386 ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + L+ LA + L I + + L+ L Sbjct: 575 LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 S L S + + + +D + +A L+ PL + Y AK A + + S + Sbjct: 635 SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 ++ ++ T + LS + + LL + P+ Sbjct: 695 TWDVIRGWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 S+ T L WF+ + S T + + + + Sbjct: 753 ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ T P I+ L N + + +L Sbjct: 797 APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 +N K A+ + A L+ T L T Sbjct: 846 FGDIINEKKAKGLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785 ++ + K + +P P EA P ++ P Sbjct: 906 MGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPTFPKEAMPSWIKNEIPEEPKPAYPLRP 965 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842 P RGTL H + L + + ++ D+ Sbjct: 966 SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + D + ++ I EK P + ++G Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070 Query: 903 DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 DR ID K V I D+KTG KE + QL+ AL+ Sbjct: 1071 DRLWIDRDK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117 >gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] Length = 1189 Score = 118 bits (294), Expect = 8e-24, Method: Composition-based stats. Identities = 104/843 (12%), Positives = 210/843 (24%), Gaps = 66/843 (7%) Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLVEL 202 + A +LA +ID D ++ L L + +R +L Sbjct: 324 AMLAQAPHLAPLIDEARQHIVSTADRLSIVRMYEATRAALILAERLNGDYEDLKKRRSQL 383 Query: 203 NASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN------ 251 + + AL+ A + + I++ + + PA ++ +A Sbjct: 384 DFEDLINRTAALLSRSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQALAADFFAGE 443 Query: 252 --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLAKL 299 + + D + + + S T Q S Sbjct: 444 TARADDRTIFAVGDEKQSIYSFQGARPERFSRESVLTERRVRAGNKYFSPIRLQLSFRST 503 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 LD L GN ++ S + DI+ + + ++ Sbjct: 504 LDVLSAVDTVFANPGNAKGLSARNEAIVHASNRIGHPGAVDIWDIIAPEPTTSEDDWT-- 561 Query: 360 ALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLARRV 402 A +A ER +A + L++ L+ + Sbjct: 562 APFDATPERAPVNILARRIAAVLEDWIGKETVIEKGVRRPMRPGDVIVLVRKRDAFVNAL 621 Query: 403 KLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 L R I + + + L+ + L +L + D +++A L+K PL G + Sbjct: 622 TRALKRRGNIPVAGADRLVLTNHIAIQDLLALGRFVLLPEDDLSLAALLKSPLVNLGEDD 681 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + A+ A + + A Sbjct: 682 VFDLAARRAEGESLWQRL-QQLGAEEKSRYCRVVRILAGYGELARDLLPHDFYARVLGAH 740 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + V+ ++ T + + ++ E + Sbjct: 741 GGRRAFLARLGSEVSDILDEFLTFALDHERSGLPGLQAFISTLEIEAPTVKREQDKERDE 800 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ + + + + + + K + I+ + Sbjct: 801 VRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRLLEKPQAGGAPVIVPVWRAPGSAS 860 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 ++LI L M + Y GQ + + T Sbjct: 861 NSLIAADNERLKRLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNLDTWHAM---VQGTL 917 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + G + D K D P P Sbjct: 918 AHDPKGRAVPTDFSAGGEEWTGHAWREAPVPVTIPESGDAKSKPDAAASILPPALFTPLP 977 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 P PR + S I+DP I+ RG + H ++ L Sbjct: 978 PPRRLPRPLAPSGTSVAIDDPDR---EAIVGSALFAEQATPKFSMLRGAILHRLLQVLPT 1034 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 K + + + P R L+H E E+ Sbjct: 1035 IEEAKRREAAERYLGRAV----------PGWPETERRALTAAVMDVLDHTELQPLFGEQS 1084 Query: 882 FVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQL 937 + + + S ++G DR+ + V I DYKT + + QL Sbjct: 1085 RAEVSVMGTLKLGSQEFAISGRLDRLAIAGD-TVTIADYKTNRDVPASVDDVPSVYRRQL 1143 Query: 938 SLE 940 ++ Sbjct: 1144 AIY 1146 >gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31] gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31] Length = 1157 Score = 117 bits (293), Expect = 8e-24, Method: Composition-based stats. Identities = 94/895 (10%), Positives = 203/895 (22%), Gaps = 106/895 (11%) Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 A L + + +P + P + A ++ E E+ E L A Sbjct: 273 ADPHADLDQALAALFTEKGAGTPATWPAKTSGLKSREDLRARLLAEQERLEEAREWLRAA 332 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA--------LMRAEAEHLMK 224 + + A + + A + A + + Sbjct: 333 RVAEDSSD---ALRLAGLYIQAHGVEKAARGALDFADLIDKTKVLLTQKVDAAWVLYKLD 389 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVA------------------NHPNGAIVLPGLDCHI 266 G I++ + + P ++ + + + D Sbjct: 390 GGIDHILLDEAQDTAPEQWAILRALTSDFFAGEGAVRWRAEHSTQAQDARTLFVVGDEKQ 449 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAK----------------LLDFLDIKREDV 310 + + + + K +D L E Sbjct: 450 SIYSFQGAAPERLLAETQAYIAQITDVGRVGKHVPLITSYRSTVEVLSFVDALFSAPETR 509 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + E R ++ + + A+ E Sbjct: 510 SGVPAPAGEDLVRHQPFRIDHKGCVDLWPLERELPGEEREAWDAPLDAESEHGANRRLAE 569 Query: 371 --AISIAIALRM------------SLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 A+ I +R L+ + L V L R G+ + + Sbjct: 570 KIAVEIQALIRRGDVVFDKETREWRPAHPGDILVLVRRRKALFEEVLRALKRRGVPVAGA 629 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + LS + L +L +D + +A L+K P + Y Sbjct: 630 DRLSLSAHIVFDDLLALGRFCLFPDDDLTLAALLKSPFCGLSDDDLYGLAKGRQ------ 683 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 L + + R T E + + + Sbjct: 684 ---------GTLWAALDARAVEHPKWTAAHALLRWALTE--SRRRQPFEFYALLLGRVDE 732 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + + + + L + E R + +L + K G+ Sbjct: 733 TTRSNRAKVLTRLGEEAAEALDEFLAQILAAEQRGVRDLEALVADFASLDIIVKREMEGA 792 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + K ++ +F+ T L+ +W Sbjct: 793 RQEVRVM------------TAHGAKGLEAPIVFLPETTMKGGARGSPLMRTDQGGFLWCA 840 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + A + S + + K AE+ + + R + + Sbjct: 841 SKANDCEPSAMARERREKKDAEEAL---RLYYVALTRARDRLILCGRIDARTKDETVGGW 897 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 R R + P+ T + + + Sbjct: 898 YAAARAAFAHPDIEPGVREISEDGRLRFGPDPMRAEAAAPSAAPAPIPTPAWTLAPARPE 957 Query: 777 QLI---NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 P + R RG + H ++ L N Sbjct: 958 TPAARYAAPSTLEDEARGSAPSPLAAVSGLGRYRRGEIIHRLLQLLPDIEPMGRGTAANR 1017 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 L+ +++ + + F + V++ A Sbjct: 1018 LLAAE-RDLTDEQRGEMAAAAFGVLEDDRFAEVF--------GPGSRAEVSVAGGAAKLP 1068 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946 G+ ++G DR+ + V + DYKT A Q+++ AA L Sbjct: 1069 PGLAISGRVDRLVVTPD-RVLVVDYKTNRPSPARIEDADPAYLSQMAVYAAVLAE 1122 >gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] Length = 1162 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 105/828 (12%), Positives = 206/828 (24%), Gaps = 102/828 (12%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSP--------VGYQIALMRAEAEHLMKGTK 227 ++ + + A + S+ W + E + + + + T Sbjct: 335 EFSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRTT 394 Query: 228 GPIIIAGSTGSIPATARLMSTVAN----------HPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + ++S +A + D + + Sbjct: 395 DHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDPQ 454 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + L R L V + + Sbjct: 455 AFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQAL 514 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS------------IAIALRMSLDEN 385 + + + E +N EE + +AI L ++ Sbjct: 515 QPHQSARSDLGGSVVLWQPISDYQEEGENTSEETDADDEEQLENGELELAIRLARQIETW 574 Query: 386 ------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + L+ LA + L I + + L+ L Sbjct: 575 LNPKTPLYLPALGRNAAPRDILILVRNRGRLASLIVGCLHAQKIPVAGLDRLTLTAPLAV 634 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 S L S + + + +D + +A L+ PL + Y AK A + + S + Sbjct: 635 SDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRKSEAEKE 694 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 ++ + ++ T + LS + + LL + P+ Sbjct: 695 TWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINELLNAALLLE-- 752 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 S+ T L WF+ + S T + + + + Sbjct: 753 ---SETTPSFQRFLD-------------WFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQ 796 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ T P I+ L N + + +L Sbjct: 797 APVVILADATRDPHQSNGFRKEIITW-----------PLDEANAPIPMPSNDDIAYLPSD 845 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 +N K A+ + A L+ T L T Sbjct: 846 FGDIINEKKAKDLQEHWRLLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITA 905 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL-INDPYAV 785 ++ + K + +P P EA P ++ P Sbjct: 906 MGIAWQEDAMWQQKAVYHWEGRKKVTDIPKKQPTFPKEAMPSWIKNEIPEEPKPAYPLRP 965 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSH 842 P RGTL H + L + + ++ D+ Sbjct: 966 SDLVKDNTSNPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAA 1025 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + D + ++ I EK P + ++G Sbjct: 1026 LRNSLIKDACDAMSNPVYRDI-------------FSEKALAEAPIAAKV--GEHVISGTV 1070 Query: 903 DR--IDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 DR ID K V I D+KTG KE + QL+ AL+ Sbjct: 1071 DRLWIDRNK-KRVHIVDFKTGRRVPATKEQVSEAYQRQLAAYVVALEK 1117 >gi|293398645|ref|ZP_06642823.1| exodeoxyribonuclease V, gamma subunit [Neisseria gonorrhoeae F62] gi|291611116|gb|EFF40213.1| exodeoxyribonuclease V, gamma subunit [Neisseria gonorrhoeae F62] Length = 1068 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 103/876 (11%), Positives = 222/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSENVGSVGTDDGSICIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L+ L + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPLFHALSCLFDLLESRFEVGKVLVL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQAVERMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + +S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|229820062|ref|YP_002881588.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia cavernae DSM 12333] gi|229565975|gb|ACQ79826.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia cavernae DSM 12333] Length = 1043 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 98/868 (11%), Positives = 200/868 (23%), Gaps = 94/868 (10%) Query: 161 TEEKKWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVEL-----NASSPVGYQIAL 214 L L + + +W L E + AL Sbjct: 62 VAGLVLTTLPRLAETLVAAHLHPRVPATRTVVAAHWRAILREEPGRFGRVAEHPATVRAL 121 Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 +RA E G +G IA S RL TVA A + A Sbjct: 122 VRAHTELRDAGDEGLDAIAASGLLAADLVRLHRTVA--ARLATRWYDETDLLRAAAARLR 179 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + H LA L D + L V R Sbjct: 180 GTHGDLPATGGNAVVVHVPGRLAHAERELLAALADARPLHAVVALTGVRRADEEVVRGLA 239 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALI 392 + + ++ + A + +E +A L +L+ + + L Sbjct: 240 EAGVEVPQERADDGARLGPAPPVATYVRHASDADDEVRLVARELVATLETVPAHRAAVLY 299 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 AR + L GI ++ ++ + +LL + + Sbjct: 300 AGASPYARLLHERLETVGIRVNGPGVRGVAERAITRSFLALLRLPQARFARADVFRALAD 359 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + R L + Sbjct: 360 APVRTSDGSPVPVA----RWEQVSRLAAVVEGTDWDARLRDWAARQHRVAETERAADDPR 415 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + + T + + Sbjct: 416 PAVLEAADRDVETAEAMRREIGALIADVTRGTELRTWRELAAWALDLLAARYGESDDLRR 475 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + L+S + + L V +++ Sbjct: 476 LPPEEQYAAAALTSALRGLEVLDDVDPVADLSTAVEAIELELERAVPRVGRFGEGVYVGP 535 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH--DFEM 690 E L+ D + + GL E +P + L ++ + + H Sbjct: 536 LGEVAGLDADVVFVVGLAEDAYPGRLRADALLGADARAATDRLAPARTWIDDRHRALLGA 595 Query: 691 ANGTRHLIYTRSLRE--NNIPTIASRWLQ------------------------------- 717 ++ T + + + +RWL Sbjct: 596 FAAAPRVVATFPRGDLRRSTERLPTRWLLPTLRALASDRDLAVTDWDTIRSPHLTGSPSF 655 Query: 718 --RLLVLGGTDFFDNLKKRGQCYLDWT-RKLDYTTKQPHYKRPKP--------------F 760 L + R + + R P Sbjct: 656 ATELTTTPLPADEQEWRVRAASAGALVPDAVVDAARDLLAGRRGPGLSRYDGDLSASAGL 715 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD--PDRTDRGTLFHNIITE 818 P S + ++ P+A + +R+L++ + ++ + GTL H + Sbjct: 716 PDHATGTPVVSPTSLESFAECPHAWFVQRLLRVQPLELPEETVTISPLEIGTLVHACLDR 775 Query: 819 LIK------KRINKNTPEINHLMKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISHSF 867 L++ + + +I D+ + + + R + Sbjct: 776 LVRTSEALPANGAPWSAADRARLAEIFDTKAREAARRGATGHARLWEVEREALLRDLGRM 835 Query: 868 LEHEEKIQS--SIEKIFVN--------IPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 L+ ++ ++ + P ++A+ + L G AD++D G + +TD Sbjct: 836 LDDDDAWRASRGATVLASELTFGTDGAEPVRVAVPGGAVALRGSADKVDRAGDGTLIVTD 895 Query: 918 YKTGDNPKKETAQK-----LIDPQLSLE 940 KTG + E + QL + Sbjct: 896 VKTGSTRRYEEIEDDPVAHGTRLQLPVY 923 >gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] Length = 963 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 113/968 (11%), Positives = 247/968 (25%), Gaps = 116/968 (11%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 H++ P + P + ++ +V + + P L + T++A EL Sbjct: 15 HDEGPVLVIAGPGAGKTFTLVE-----RIVHLVAHKGIQPEQL---LVATFTEKAANELT 66 Query: 62 SEFIEIT---GKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 S G ++ + ++ + L + + +++ L Sbjct: 67 SRIARRLMQEGVQAN-------VDEMYVGTLHSICLRLLEEHREFTRLRKNFTLMDQFDQ 119 Query: 119 --WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEK 176 + + ++L P S L A L ++ + E + L A ++ Sbjct: 120 SYFFFQHLRQFEELAPLSLLVRGNVNVGRWKRATLLCGWMNKLSEEVLSADALQA-DPDE 178 Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231 L + L + N Q+ ++ + + ++ Sbjct: 179 VI-------QALGKWYALYLSLLEKENLLDFSVIQLEALKLLKNNPRVLTSLREKIRYVM 231 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + + RL+ T+ + V+ D + T ++ Sbjct: 232 VDEYQDTNTIQERLLFTLLDDKQNICVV--GDDDQGLYRFRGATIRNILEFPRRFPKGRC 289 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 Y+L + S + + F P I Sbjct: 290 AVYTLTVNYRSDPGIITFYNDWMSGSVDGFSWQGDGGTVFRHPKRISPPEGKISLKTPVL 349 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA--DRNLARRVKLELTRF 409 + +N EE + ++ + + A + + A+ + L Sbjct: 350 RLSGSAS-----TENWHEEVLEFLKKMKERHLTDWNQVAFLFRSVRWDKAKALASYLEEH 404 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 GI I ++ I L+ F + Sbjct: 405 GIPIYAPRSDLYFEREEVRLM---------------IGALL---FLFPVFRDI------- 439 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + G +D D L+ Q +N + W RL E V + Sbjct: 440 REQWQKNFGALAIWDFYDTCLLLFAEKLRQPDNKELKDWCVRLVRE--------VQGMRI 491 Query: 530 CITPLVTYKTNKNSTCGNLSI-SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 TPL ++ + SD+ +L + L + E + Sbjct: 492 RNTPLDWGFSSLFYQLIQFPLFSDYLELGTSSRDERPARNLAIFSQLIVKFEYLHHIQVL 551 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + I+ I + + +++ L F ++G Sbjct: 552 HPAYLEKNIGDFFNHYLRYIVDGGITEFEDPGDSTPQGAVSFMTIHQAKGLEFPITVVGS 611 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA--AHDFEMANGTRHLIYTRSLREN 706 L+ ++T + L + E+ + + ++L+ E Sbjct: 612 LHAVPRKQHTDLDELLEARHYERPAFEPLERIKEFDFKRLYYTAFSRAKNLLILSCQEE- 670 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 L + W K P + Sbjct: 671 ---------LTARGKFKIPSHPFHAFYA--NLPSWREADFSKLKVD------TVRPGGIK 713 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RIN 825 S I P + + G L H I ++ K Sbjct: 714 GHYSYTSHILIYEGCPRQYQFFKYWDFSPVRE-----GPMLFGQLVHQTIEDIHKAVLRE 768 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDI--IWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 ++ ++ D ++ + + + R + ++E ++ I Sbjct: 769 QSETVTEDNIRLWFDVNYANLSQKERVYLAPQIREVALGHVLRYVERKQGRWDDIR--GT 826 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKL----IDPQLS 938 + + + LTG D I K V+I D+K PK A++ QL Sbjct: 827 EVDVSLIRD--EYILTGKIDLI-QGKGNTVEIVDFK--ATPKPNQYAERHLLERYRRQLE 881 Query: 939 LEAAALKA 946 + A ++ Sbjct: 882 IYAYLVEQ 889 >gi|300853886|ref|YP_003778870.1| putative ATP-dependent nuclease subunit B [Clostridium ljungdahlii DSM 13528] gi|300434001|gb|ADK13768.1| predicted ATP-dependent nuclease, subunit B [Clostridium ljungdahlii DSM 13528] Length = 1150 Score = 117 bits (293), Expect = 9e-24, Method: Composition-based stats. Identities = 101/905 (11%), Positives = 236/905 (26%), Gaps = 129/905 (14%) Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 + + I + ERL N L + + I P + Sbjct: 155 LEDIIIIYSEFQERL-HKNYIDSEDILSLLYEKL-DKSNFFNNAEVWIDEFYSFTPQEYK 212 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 ++ V + D + ++ + KLL+ Sbjct: 213 VLEKVIYKSYRTNITLCTDILSENSSLESMDLFLPTKITE------------KKLLEIAK 260 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + ++ + Y R ++ I ++ S + + +A Sbjct: 261 NNNISYDKPISLKSNSYSRFKGNAEL-------GHLERYIFSYPYKTYKRSNSSIRIFKA 313 Query: 365 DNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVK-LELTRFGINIDISAGIP 420 N+ E + A + + + +++T D + + ++ I I Sbjct: 314 LNKYTEVENSARDILKMCRDEGFRFRDISVVTGDLDGYENIIKAVFNQYNIPYFIDKKRE 373 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + + ++ S + + K + A+ +K L F E + + + Sbjct: 374 IDDSPIIILIISAIEILSKNWSYEAVFRYLKTGLLNLEFDEIDMLENYVLANGIIGKKWT 433 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 N + + T + + ++ +E + L I Sbjct: 434 NPKPWNYRINYGNFDEEISEEETEYLKKINCIRDKVREPILKLSKDIKG-----KKTGQQ 488 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 N ++ V L + + + + + + +I Sbjct: 489 MCEGLYNFLLNLEVPKKVETLIKEFRNTSKLDKANEYSQIWNIVVDILDQIAVVIGDESI 548 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + +++ + + + R + L + G+N+G++P + + Sbjct: 549 GMELFSEVLANGFSQYEIGVIPASLDQVLVSSVTRLRSHDVRILYIVGVNDGIFPASISA 608 Query: 661 NPFLSRVMQSDLNLKTAE-------KYIGQAAHDFEMANGTRH-LIYTRSLRENNIPT-- 710 + + + +L + E + + + + L + S+ + + Sbjct: 609 DGVFTDEDRDELRKRGMELAKDTRSRAFEEQLLVYGILTKADKYLTLSYSMSDEEGKSKR 668 Query: 711 ----------------IASRWLQRLLVLGGTDFFDNLKKRGQCYL-DWTRKLDYTTKQPH 753 S L G + + K + + R ++ Sbjct: 669 QSIVISIIKKLFPKVQEESNLKGILGDKAGIEAVNGPKDTFNELISNIRRSIEDNNSVDP 728 Query: 754 YKRPKPFPPLEAQPRT---------------------------------YSFSEIKQLIN 780 + S S +++ Sbjct: 729 LWINVYRWYKNDPSWSKKVETVLKGFSYNNYIEILDKSKVRRLYGSHLNISVSRLEKFSE 788 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840 P+A + + LK++ + D G+ H+I+ + + K + + + Sbjct: 789 CPFAYFVQYGLKVEDRKM--YNLSSPDLGSFMHDILKKFSIQLKEKKLTW--NDIDRNWC 844 Query: 841 SHFEKENLPPHIDII-------------WRHLFHKISHS--FLEHEEKIQSSIEKIFVNI 885 K + + + KI +L E + + Sbjct: 845 EENVKVVVDSTLSGMPGSILNSSKKYKHITDNLKKILTRSVWLIAEHMKRGKFVPRAYEL 904 Query: 886 PA--KMAIE--------SIGIHLTGFADRIDLLKSGF---VDITDYKTGDNP-KKETAQK 931 I + L G DRIDLL+ + I DYK+G K Sbjct: 905 SFGDSGDIPPISIKLHSGEEVSLIGRVDRIDLLEQDSVVYLRIIDYKSGTKEFKLSDIYY 964 Query: 932 LIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 QL + A L + Y +L D I + S E+ +K Sbjct: 965 GFQMQLLIYLDAILAELDEKFNKEGIPGGILYFKLD-----DPIIKTEGNISDSEIEKKI 1019 Query: 991 LKNLI 995 LK+L Sbjct: 1020 LKSLR 1024 >gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] Length = 1108 Score = 117 bits (293), Expect = 1e-23, Method: Composition-based stats. Identities = 87/848 (10%), Positives = 198/848 (23%), Gaps = 103/848 (12%) Query: 159 IETEEKKWEDLHAL-------KNEKYGMWW---LLAADFLKIASKYWTERLVELNASSPV 208 TE+ L L E+ W L + Sbjct: 314 ALTEDADPALLSDLRQVLLLPDVEEEPQHWHVLAALTRLLPRLGAQLLLVFQQSGEVDHA 373 Query: 209 GYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 +A + A + +++ + L+ + Sbjct: 374 QIALAALTALGSDDEPTDIALRLDHAIEHLLVDEFQDTSSVQFELIRRLTRGWQD----Y 429 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 + + + + +I + ++ + L + D+ + Sbjct: 430 NTENNQAPRTLLLVGDAMQSIYGFREANVGLFIRARSEGIGDLALTPLDLSVNFRSQQGL 489 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + K+ P + I EA A+ L++ Sbjct: 490 VEWTNSHFKAGFPATDDAQLGAVQYRSAAAARDPGPEPELAIFTGEGANEAEIAALCLKL 549 Query: 381 ---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 +D+ + A++ R+ R V L GI + L+ L +L + Sbjct: 550 EEGLVDDQVESIAILGRSRSQLRPVLAALRERGIEVAARDLDTLAQRPLIRDLLTLSTVL 609 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D A L++ P + + + + D + Sbjct: 610 CDRFDRYAWLALLRCPSI-----ALDNADLLLMSMMCPTAADLSDPDFVA---------- 654 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + L D Q + L + L++ W + Sbjct: 655 -------------------SQEFARLSDTARQRVGQLQNVLQWADHYRDRLALRVWVEEC 695 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L + + ++ ++ + Sbjct: 696 WLLLHGAGAL------------ASEADIHDAERFLQCLEQLEMQQQTLNGRMLNEAMDTL 743 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNL 674 ++ + ++ +++ L FD + + L + ++ + F+ L Sbjct: 744 YASPGDERCKVQVMTLHKAKGLEFDWVFIPALAKNTAGQDRELLLWDEFVLPGSAPAFLL 803 Query: 675 KTAEKYIGQAA-----HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 G + A R TR WL L Sbjct: 804 DIRADAEGGDRPRMYDYLKAQAKQKRDCEATRLFYVGCTRAADYLWLGATLSWDEAKEAH 863 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 G ++ P + T S + ++L + P + A Sbjct: 864 RPPGAGSLLSVIWPTIESQLDVSFV-------PADDAITTESLTGYRRLRDLP-RIEATP 915 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 L ++ GT H + L+ + + + ++ + Sbjct: 916 QDALAQGLKLAENYQARAFGTAIHRCLEALV--YRPQLPRSCDAALGALLKVALLEAGAD 973 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRID 906 + + L + + + E+ L +D Sbjct: 974 SSSLSRLQSEGAAMLDRVLADPFAAWMLSGERHERAAELALTVGTETGTQQLI-----LD 1028 Query: 907 LL----KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA--GSFSQIDCRKVANL 960 G + DYKT + E+ ++ + QL +A L A + ++ V Sbjct: 1029 YSFVDEARGERWVVDYKTSAPGEGESEEQFMANQLQSYSAQLSAYVLALAERFSEPVRCA 1088 Query: 961 FYIRLKQK 968 Y K Sbjct: 1089 LYFPALGK 1096 >gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 1185 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 92/830 (11%), Positives = 209/830 (25%), Gaps = 116/830 (13%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGS 235 A + + + + + + + I++ + Sbjct: 364 ALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEA 423 Query: 236 TGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 + P ++ ++A + D + + + T Sbjct: 424 QDTSPVQWSIIQSLAADFFSGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETK 483 Query: 288 YS-THPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + + ++ L +D D K +S + +++ P Sbjct: 484 RRVDSVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAGHPG 543 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-------------MS 381 + D AL E+ A IA + Sbjct: 544 TVEVWDMVAPETAEDEEDWTAPFD-ALRESAPATIVARRIAARIAGMIGNQTIIEKGVER 602 Query: 382 LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 E L+ + EL R I + + + L+ + L +L + Sbjct: 603 AIEPGDILVLVRKRHAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLP 662 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 D +++A L+K PL + + A E V R S D S+V +++ Sbjct: 663 EDDLSLAALLKSPLFNLSEDDVFDVAATRSDTESVWQRLQTLSQDENSRFSVVANKLKNF 722 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + ++ + + L D + + L ++ + ++ Sbjct: 723 IALS-----KTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGLPG 777 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + + E +++ + + + G Sbjct: 778 LQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVF----------------- 820 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + G+ + L + +P + F + ++++D Sbjct: 821 --------VVDGGSKAFNHSHVPKLRFVEADGDAFPVWLPGSGFSNHLIRADEERLKTAA 872 Query: 680 YIGQAAHDFEMANGTRHLIYTR------------------SLRENNIPTIASRWLQRLLV 721 + + +L +N +++ Sbjct: 873 EDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKTALADNEKHCQPQQFMADGEE 932 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G + + + P P L + PR S S +I+D Sbjct: 933 WQGLVWRKSDARSTPAPQRLPEPQTQEEYALPAGLLTPLPALPSLPRPLSPSGAGTIIDD 992 Query: 782 PYAVYARRILKLDFIPHFKKDPD--RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 A R + K D RG L H ++ L + Sbjct: 993 GADDLAVR----SPLFGEKADVSSLALQRGRLVHRMLQALP-----DFAESEREEAARRY 1043 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGI 896 + + + R + + E +Q + V+I M I Sbjct: 1044 AERAARFWPSAEREHLIRAVLRVM------SEPAVQPAFSPNSRAEVSIMGTMTIGRQHY 1097 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944 ++G DR+ + V + DYKT P ++ + QL++ L Sbjct: 1098 AVSGRIDRLAVDGD-RVILVDYKTNRVPPRDAHEIPFSHTAQLAIYREIL 1146 >gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] Length = 1153 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 97/975 (9%), Positives = 236/975 (24%), Gaps = 126/975 (12%) Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPE 133 LP +++ V+ + S V+ + L+LA L + P Sbjct: 243 LPAWRAVASVLFDGGGKQDAKSAEALAAVARDPDATLDLA------LRALFTEGGEGTPA 296 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASK 193 + + + L + L +++ + E ++ + A + + Sbjct: 297 TWPAKTSGLKSREDLREAL--LLEQAKLE----AAREQVRAARVAEDTQNALLLAGLYIE 350 Query: 194 YWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARL 245 A E + I++ + + P + Sbjct: 351 RHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHILLDEAQDTAPEQWEI 410 Query: 246 MSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS--- 289 + + + + D + + Sbjct: 411 LRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPTRLLEETQGYISRIEA 470 Query: 290 -------------THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + +D L + + + + R + Sbjct: 471 VGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDLVRHELFRHGHPGCVD 530 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--------------RMSL 382 ++ +K + A+ EAI+ R Sbjct: 531 LWPLTRELPGEDREAWEKPLDEEGERSANRRLAEAIAAETRAILDRGDAVFDKDLGRHRA 590 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 L+ + L + L R G+ + + + LS+ + L +L I +D Sbjct: 591 AHAGDILVLVRRRKALFEEIIRALKRRGVPVAGADRLALSSHIAFEDLVALGRFILFPDD 650 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + +A L+K P G + Y L + R ++ + ++++ +A + Sbjct: 651 DLTLAALLKTPFCGLGDDDVYALAKGRRGTLWVELTRRSEERPEWAAARAVLDWALAEGR 710 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + L D + + + ++ + Sbjct: 711 RRQPFEFYAGWLGLTDAD-------------------GRSHRAKVLTRLGAEAEEALDEF 751 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L V E R + +L + K G+ + + Sbjct: 752 LAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVM------------TAHGS 799 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 K ++ +F+ T R L++ +W + + +S + L+ ++ Sbjct: 800 KGLEAPIVFLPETTVKRGAGGSPLLVTEDGALLWCASGKNDCAVSAKARK---LREDKES 856 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG--TDFFDNLKKRGQCY 738 + R + + D ++ G Sbjct: 857 QEALRLLYVALTRARERLILCGRIDARTKDDKVGGWYAAARAAFAHPDIAPGVRTIGDGE 916 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + R P + ++ Sbjct: 917 TAFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTARVPAPSP 976 Query: 799 FKK--DPDRTDRGTLFHNIITELIKKRINKNTPEINHLM--KQIIDSHFEKENLPPHIDI 854 + R RG L H ++ L + ++ ++ + E ++ Sbjct: 977 LARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAERDLTDTQRTEMASAAFEV 1036 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + F + + V + A G+ ++G DR+ ++ V Sbjct: 1037 LEDARFAAV-----------FGPNSRAEVALAGTSAHLPQGLAVSGRVDRL-VVDDARVL 1084 Query: 915 ITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 + DYKT A Q+++ A L+ R V K+ Sbjct: 1085 VVDYKTNRPSPDRIEDADTAYLAQMAVYVAVLREV----FPGRTVEAALVW--TDGPKLM 1138 Query: 973 CITNDKKKYSADELS 987 + + L+ Sbjct: 1139 PVPEKVMALALARLA 1153 >gi|269218750|ref|ZP_06162604.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211861|gb|EEZ78201.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332] Length = 1079 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 117/1068 (10%), Positives = 242/1068 (22%), Gaps = 144/1068 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADL-LLSYNLNPPVS 104 + + +RA L+S G S + ++SL + + +S Sbjct: 50 RIAVLTLDRRAASSLQSAVSLTNGSLSERV-SVRSLVSFCYGIVQSYAQAVGRREPELIS 108 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + L+ ++ + E P + + D++ Sbjct: 109 GPEEDALLSDILAD---------PEAGVEFPDFVDDDLRRQRGFRAQMRDLLTRACELGL 159 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL---------- 214 L L E W+ L + T R A+ Sbjct: 160 SPRRLEDLGREHGEPMWVAGGQLLGLYEGVTTARDALAGAADAPDRLDHAHLVGAATAIL 219 Query: 215 ---MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 + +I+ + + L++ +A +GA V+ D + Sbjct: 220 RDWEANVPGPHPRPRWDWVIVEDIHNAPRSVLGLLAELA--ADGASVVTTGDPDCAVQGF 277 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 ++ L L + ++ V++ + V + Sbjct: 278 RGGVASLPGDVAAPAP------RGLGSRTVALRQRHRGGPKIAGVADALAEAVRVGGGAV 331 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSAL 391 + K S + + E R+ + A+ Sbjct: 332 RQRN-----------PKAAERPDSVSARRFVHPEEEAAAIARAVREARLLRGIPYSEMAV 380 Query: 392 ITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSSILTSLLNAIFKL-NDFMAIATL 449 +T R+ ++ L R G+ + PL L SL+ + + Sbjct: 381 VTRSRSTHPGLRAALVRRGVPVGQIGTDRPLREEPAVDALLSLVRLALDRAFGSAELVRV 440 Query: 450 VKHPLAKFGFPE-------------------------------------------KYLSR 466 + PL L R Sbjct: 441 LTGPLVGIDPLRLRQIGRILRGGELARGGSRSESELLSLAAEGPSRLSEVAPKGIGDLLR 500 Query: 467 AKNALELVALRGNKNSYDIMDLKSLV--------LDRIATQKNNTHVPHW---------- 508 A LE V +++ ++ R A + T Sbjct: 501 AARMLETVREAAERSNRQAEEVLWAAWESSGKAEEWRKAALRGGTAGDAADSALDSVIQL 560 Query: 509 -------QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 R + + + + + + S + + Sbjct: 561 FRVAQRMADRDVDVPVDAVLDELQTHDLPEDSIARAGAAAQTVTLTTPNSSIGRQWEFVV 620 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGSCIKANAIEWIDIITRLIDGETV 618 D L + + + + +I+ + Sbjct: 621 VAGLQDGLWPNMRLRDAYTATGRLAQIVTGRDPGAGADGLAGRRQAYEEILDDELRQLHH 680 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 L L G + S + Sbjct: 681 AVTRANGELLLTC-ADSEEARPSRFFELMGFVPEELQDAASAGRQGSGDARQSGGSPDVA 739 Query: 679 K----YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + A + S R + + G Sbjct: 740 GAQSPSAALDSDGVRHAAAASGRLVLESPRAAEGELDVVGLVADIRRSGAGGREAEEVLA 799 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 R+ D T + S S ++ +++ P + + Sbjct: 800 RLR-EAGFRQADRCTWAEALEPTPSRGIEAGGTVVVSPSRVETMLDCPLRGFLSLVGA-- 856 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 D D GTL H I + + + F+K P Sbjct: 857 ---EDSDDRRTADIGTLVHAIAERSAGASREEIMGDFEA-----SWAAFDKPEDPVAAQA 908 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + + E V + +E G+ L+G DR++ + Sbjct: 909 -EYARARILVEGLASYLEDFARGGGSAEVERRISVDMED-GVVLSGKIDRVEHDGAAR-R 965 Query: 915 ITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDC 973 I D+KTG + A+ + QL L A+ S + A L Y+ K Sbjct: 966 IVDFKTGKHTVSAKQAED--NVQLQLYQWAM---GKSGLPADGGAALVYLGQTLKKTNLP 1020 Query: 974 ITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 +++ + + + L + LLQ GE F + + ++ Sbjct: 1021 AQREQRPLGPEG-KALAEERLRQAGRLLQGGE--FPARPSQACRTCRF 1065 >gi|227890028|ref|ZP_04007833.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii ATCC 33200] gi|227849472|gb|EEJ59558.1| ATP-dependent nuclease, subunit B [Lactobacillus johnsonii ATCC 33200] Length = 1158 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 110/1030 (10%), Positives = 254/1030 (24%), Gaps = 168/1030 (16%) Query: 46 SVTIYVPTK-------RAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V I VP RA+ +L L I S + + Sbjct: 32 DVFIIVPNHIKFTTEVRALSKLS-VLTNKKQVAVNKL-HILSFSRLAWYFLR---DEAIK 86 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 L + + ++ L +++ + +L + L + + Sbjct: 87 LPQILDDAASVMLLEQIVKDHQGELKLFQNQTQVT---------------SGALRQMYEA 131 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 I + +L + +K L+I + ERL E A+ L+ Sbjct: 132 ILSVRAGNIELDNIDEKKLNEETSYKIHDLRIIYDEFIERLSEKFAT--KDEMQLLLNEF 189 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + + ++ + K+ Sbjct: 190 LAKSNNLSTMEFYFSDFSHFSLQELTSVRLISKKAKNTT----------------LAFKT 233 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N Y + + + L + + + S Sbjct: 234 KIGKIDNNAEPGDYDYVVQRTIGQL-----EHFWQNQQLDYQTQEYPLTQTSPSSLLNGV 288 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKKKSALITAD 395 T + ++ + ++AD+ EA +A + + + + ++ + Sbjct: 289 WTKTSGFDERLSKF------LQPVKADSRYAEAYFVARTIYQQVALNNYRYQDFLVLAPN 342 Query: 396 RNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + L + I + + +L + + L+K L Sbjct: 343 LSEYETYLTPILRQNQIPFFNDLQREMKYHPLVVAVENLQQIFKRGFQTDNVIALMKTQL 402 Query: 455 A--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + + LE L + + + Sbjct: 403 FIPDWYKNSARYQNDVDLLENFVLAHGIKGKLWT------KSLKSFVDADVIALDKSEKE 456 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHR 570 EE L +D + + L + + + + + + D Sbjct: 457 VEELDRLREYFIDALTKFFEQLDKEEDPQAGVTVFWNFLIKNHVAKRLESWRKEANDTGD 516 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 E+ TL+ L + + K + ++ D++ + I Sbjct: 517 LQLAQQPEQVWSTLTDLLKDYLLVAT--KFSVDQFFDLLISGFSEANFSQIPSTLDAVNI 574 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIG 682 + + + + G P+ F S LN L+ +K Sbjct: 575 SELGMVQGQGYKRVFIIGATSTNLPQIEKIPGFFSSENLEQLNEGNEANGYLEDQQKINN 634 Query: 683 QAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-- 736 + ++ + + + + N S + ++LL L + F Sbjct: 635 LDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLKLTRANEFSQHDLPQNNG 694 Query: 737 ----------------------CYLDWTRKLDYTTK-----------------QPHYKRP 757 D LD T + P P Sbjct: 695 DVLTFITNPEASLGYLTYLKNKAATDIESLLDMTEEKIGEIAKNVLEGSSFKNIPQNLSP 754 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 L S S+++ + + + L L F+ + D G +H Sbjct: 755 DLAQQLYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFD 812 Query: 818 ELIKKRIN------KNTPEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHS 866 L+K+ T E + + ++ + L + H + + + Sbjct: 813 YLVKRIKEKKLNFADLTEEKLGELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTAN 872 Query: 867 FLEHEEKIQSS--IEKIFVNIPAK--MAIESIG------------IHLTGFADRIDLLK- 909 + + + + + + + L G DR+DL + Sbjct: 873 VAHYWHSSVNKTTFRPQYSELSFGKNQKVSGLSYSWKDDNNKKKIVDLRGKMDRVDLAQV 932 Query: 910 SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANL 960 + + + DYK+ + + Q+ LK + F+Q V Sbjct: 933 NDRILGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLKNNNKFFAQGKDLDVLGA 988 Query: 961 FYIRLKQKFK 970 FY + + Sbjct: 989 FYQNITSSLE 998 >gi|149193950|ref|ZP_01871048.1| hypothetical protein CMTB2_02658 [Caminibacter mediatlanticus TB-2] gi|149135903|gb|EDM24381.1| hypothetical protein CMTB2_02658 [Caminibacter mediatlanticus TB-2] Length = 734 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 76/408 (18%), Positives = 141/408 (34%), Gaps = 67/408 (16%) Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + +G LE+R LNFD +I+ NEGV P + + FL+ ++ +L T E Sbjct: 385 FDDVDGGKVTAMGVLEARGLNFDGVIVVDFNEGVVPNISDTDYFLNNSIRKKTSLPTRED 444 Query: 680 YIGQAAHDFEMA-NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + + ++ + SR+L L + G + R Y Sbjct: 445 KESLQKNYYYNLFLNSKKIKIAYVKN---EENNPSRFLYELGLNEGEN-------RDFYY 494 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + + K+ Y +E + + + + + L+ Y + IL++ Sbjct: 495 SEVLYRFSKPKKRFSYD------GIEFEVKNLTPTSLYDLLECKRRYYFKYILQIKNEIE 548 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 K + GT+FHN I ++IK+ N + + LM++I+ +KE I W Sbjct: 549 EKD-----NFGTIFHNSIEKVIKEGFNSSDEYFDKLMREILKEKDKKEIF--EIRSKWED 601 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 K ++ + F K+ L DRID + DY Sbjct: 602 KIKKFCE--IDFNRARNYKNVEKFAEYGKKL----GDFILNARFDRIDEE-----FVYDY 650 Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 KTG + + ID + LFY + +K I + Sbjct: 651 KTGS----KE---------------------NNIDKDTLQRLFYNYIFEKPAIFYYIKED 685 Query: 979 KKYSADELS--EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + +++ K L +++ ++ F + K+ EY Sbjct: 686 NIEDKENNLSPQEAKKELEKLLENIE-----FKVEMTDDIKNCKYCEY 728 >gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist] gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist] Length = 973 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 115/1000 (11%), Positives = 263/1000 (26%), Gaps = 159/1000 (15%) Query: 50 YVPTKRAIQELRSEFIEITG-----KKSTILPIIKSLG--DVVEEKFTADLLLSYNLNP- 101 T++A EL S + + P I L + + LL + P Sbjct: 70 LTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVLTYNSFANSIYQDNALLLDHPVPY 129 Query: 102 -PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDI 158 + + + L RL++ L + ++ S I +AI NL D+ ++ Sbjct: 130 TAIEDSEAQLIARRLLVEH--GLDEDEPSETIDNLASSLIKLDDAI--VDNLLDLGELNQ 185 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 +E ++ K ++ L + S + Sbjct: 186 FASEFIEFVGAFDAPVAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVC 245 Query: 219 AE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 + + +++ + P + T+ N VL D + Sbjct: 246 RQTHVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFG--NRCRVLAVGDPRQAIFGFRGA 303 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + + + + + L I + K + ++ Sbjct: 304 SVANIANFARDFVSNKQY---------ELSISWRNDKNILDL------------------ 336 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 + + P + +L + +E A+ L +++ +A++T Sbjct: 337 ---ANHISPKIRPLHPRPEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKG--TAAVLTR 391 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 R+ V L G++ A + + + S + I +N+ ++ L+ P Sbjct: 392 TRSRLISVSRVLDEIGVSYTR-ADVNIFYEPEVVDILSCMRIISGVNENLSFLRLITGPR 450 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + G + + R + + LDRI+ + + ++ +S Sbjct: 451 WQVGISDLHALR-----------------GYIAVGKKNLDRISLLEAVNRINIQKTPMSC 493 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E K+ ++ + I L + + S++ + Sbjct: 494 EGKKRLEDFLEFFRK-IKGLSFLSPLELAYLIEESLNLDIE------------------- 533 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS--STLFILG 632 + G+ ++I + + + + L + + + ++S + + Sbjct: 534 VQMSHRGRENLDALYELIASFRGDNLSEM--LAWFDSLEEEDAFRGPTKQSCPGQVELFT 591 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPF----------------------------- 663 ++ L +D ++L L++ Sbjct: 592 VHSAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDSK 651 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 R + + I + +A S P R + L Sbjct: 652 EYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQFLREISEFLQTD 711 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND-- 781 N K+ Y + +E + +K LI Sbjct: 712 LPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESLKKEPLKALIAGML 771 Query: 782 ------------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + A + + G FH I + Sbjct: 772 KELDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWIENYYSTYSDMLFH 831 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 E + I FE+ + ++ H+F++ E S + I V + + Sbjct: 832 ENSADEYGISGPVFEQS-------QRFSPELDQLRHNFMQSEW---SYKKPIAVELSLEW 881 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 I + + D + I D+K+G + + QLSL A + Sbjct: 882 LI--GDVIVPCTIDAVFFDGD-RYTILDWKSGLSSNQ------YRIQLSLYRLAFAE--W 930 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 ++ KV Y + + Sbjct: 931 KGVNPDKVEAKIYFAADNRTIKVRPYTVDELGKMPGFLSD 970 >gi|255323064|ref|ZP_05364200.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255299926|gb|EET79207.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 860 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 81/296 (27%), Gaps = 40/296 (13%) Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 R A L + Q ++ +P Sbjct: 576 ERSLFEFGEAESELNLADKFDEKAAQNKTLSEKQQAVNLINFTRKMPAKPKIFEQDIIVK 635 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + SFS + + P Y R IL + + D G H + E K Sbjct: 636 HDFFAIPLSFSRLNTYLQCPRRYYYRYILGVKPPVMP-QTASAADFGNSLHRALFEYYSK 694 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI-QSSIEKI 881 + + ++ + N PP I K F E+ +S Sbjct: 695 FDRFDLAK--------FETVLRELNTPPLEREITMIKMEK----FKAVEDARYESGWRVK 742 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + G+ +TG DRID+ G + + DYK+G QL Sbjct: 743 GLEKELDSVFA--GVRITGKIDRIDVCG-GELAVIDYKSGK-------FDAKSLQLPFYE 792 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 A + + ++ LK N ++ + ++++ L I Sbjct: 793 ALV----------GRPCEGYFYDLKDN------MNLVAGEASTDALAEAIEQLKSI 832 >gi|59801717|ref|YP_208429.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA 1090] gi|59718612|gb|AAW90017.1| putative exodeoxyribonuclease V [Neisseria gonorrhoeae FA 1090] Length = 1068 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 102/876 (11%), Positives = 220/876 (25%), Gaps = 69/876 (7%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L I V ++ + L + G + + SL + K L+ P Sbjct: 29 ALQPEQIVVQSQGMRRYLNTCLARDLGVAANLA---FSLPAGLTWKLMKKLIPGIPELSP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L + +D+ L + LA LADI D Sbjct: 86 FAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVY 145 Query: 163 EKKWEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 +W D W W R ++ S + A Sbjct: 146 RPQWIDAWQQGRILGLGDDEIWQSKL---------W--RYLDDGRQSAPHRVALWEKLLA 194 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + G + P +L+ ++ H + + W + E + Sbjct: 195 ALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNP----SGMHWGNVIEAAQ 250 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + T + L L D + E + L +D+ Sbjct: 251 ILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDI 310 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITAD 395 +N + + ++ + ++ A + E + L L E+ A++T + Sbjct: 311 QNLKMPSENVGSVGTDDGSICIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPN 370 Query: 396 RNLARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + + +S L + + + + + L Sbjct: 371 IEPYTPFIEAVFGQAQPGAQALPYSVSDVKISRRQPFFYALECVSDLLESRFEVGKVLAL 430 Query: 450 VKH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ + L A V + D + Sbjct: 431 LETAPVLRRFGLTGDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQAADRMILGWML 490 Query: 506 PHWQSRLSEEDKELAVLLVDHILQ--CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P + + ++ + + L T ++ +W L+ Sbjct: 491 PEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLET 550 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + + E + G + I I R +D E+ Sbjct: 551 LFQAGPDDQKAVQNLE--NEWVKWQEESTLAGFFGQLPQQTVIRHIRRFLDSES--EAGF 606 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R L F + L GLN+G +P+NT F + Sbjct: 607 LRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNTKAAVFDLVAKHPAKGDRARRDDDRY 666 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R L + R+ + +S L L+ N ++ Q +++ Sbjct: 667 --LFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMTGTNSRQLAQNWIE 724 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 Y + RT + + Q P + + + + + Sbjct: 725 QHPLQ---AFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIG 781 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 +D + + ++ I ++ E P Sbjct: 782 QDE------------FIRFWRNPVKVWLQQLAWSEPHIGEAWEPAEPFEPQH-------A 822 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 +I+ +++ + + I A+ + S + Sbjct: 823 EQIAETYIGARRE-GQDFSQTAARIAAESLLPSGEL 857 >gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440] gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440] Length = 1144 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 108/1049 (10%), Positives = 237/1049 (22%), Gaps = 162/1049 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG------KKSTILPIIKSLGD----VVEEKFTADLLL 95 V T++A EL G ++ P+ L + ++ Sbjct: 83 QVLGLTFTRKAAGELAHRVRTRLGQLVRRLGRNGRHPLDDPLSGEPTVATYHSYAGRVVT 142 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + L RLL A + + E + LA L + Sbjct: 143 EHGLRAGYEPATRLLTEASRWQ-LVDLIVRTYDGDMSEVDRMPSTVTDAVLALAGELDEH 201 Query: 156 IDI----IETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 + + + D+ + + L + + + R + A Sbjct: 202 LVEPDHLSAWTGRFFADVQSRPGRVYADVRRALTLAQVRLKLLPLV-RAYARRKEDFEAM 260 Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 R +H + + +++ + A L++ + G V Sbjct: 261 DFADQLARAARVARDHPVVGEIERDRYRVVLLDEYQDTSHAQVVLLNALFG--GGHPVTA 318 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W + + + + + + L + E + ++ + Sbjct: 319 VGDPCQSIYGWRGASAGTLDRFRTEFAQTDGAPAQVRTLTTSWRNRPEILGVANALATPL 378 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + + V +EA IA +L Sbjct: 379 RAAGARVPELRAALSVKEPIPHRTPRGF------AAGTVHCALLSTYADEADWIADSLLR 432 Query: 381 SLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 + + +A++ R+ ++ L G+ +D+ L T Sbjct: 433 AWQGAAGTPGVMPEHLPVVARPTTAVLVRLRSQIPAIESALRARGLPVDVVGLGGLLDTP 492 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 + L + D A+ L+ + G + + A R + Sbjct: 493 EVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIAAARRQLAADDEP 552 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + ++ AT S E + L + + Sbjct: 553 EIVPDVLD--EATLVEALADLGPAPAYSAEGYARLRAAAQELGLLRYRLDQSLPDLIADV 610 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 D + + S ET + + + Sbjct: 611 ERTIGLDVEVAVRAGRDGAGDAGLARGHLDALGDVAARFSG------ETPGATLSAFLAY 664 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL- 664 + G + +L ++ L +D + + GL+ GVWP + Sbjct: 665 LAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLEWDVVAVAGLSRGVWPGPVRNSDHWL 724 Query: 665 -----------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 Q + A+ AHD ++ TR Sbjct: 725 GGLGVLPFPLRGDADGLPVLALAEAEEQRGVAQALADFTAAWRAHDEREERRLAYVAVTR 784 Query: 702 SLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 R P S L+ + + T Sbjct: 785 PRRLLLCSGHWWGEGTKRPRGPSALLRDVHQACLNGGAGQVVDEWAAEPAPDAVNPTTEV 844 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP---------------------------- 782 + P + + +++ + D Sbjct: 845 VLRAEWPADPLGARRPVLAEAATLVRRYLTDGVPTRPASGGVTAAGPPVPGASDSVADDP 904 Query: 783 -------YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 L L + + ++ + ++ + + Sbjct: 905 GGDDPEVVRWRREADLLLAERAELTRQAGPIEV--ALPAALSVTQLVTLRRDPAALARSL 962 Query: 836 KQIIDSHFEKENLPPHIDIIWRH--------------------------LFHKISHSFLE 869 ++ + + W ++ FL Sbjct: 963 RRPLPTEPNPYARRGTAFHTWLEQRFGAGRLLDVDELPGAADADAAPDEALAELQERFLA 1022 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929 E + V +P I G+ + G D + G D+ D+KTG P A Sbjct: 1023 SEWADR---TPAEVEVPFATVIA--GVVVRGRMDAVFGRPGGRFDVVDWKTGRQPTGA-A 1076 Query: 930 QKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 QL++ A + + A Sbjct: 1077 AAAAAVQLAVYRLAWAELAGVSVAQVGAA 1105 >gi|255305966|ref|ZP_05350138.1| ATP-dependent nuclease subunit B [Clostridium difficile ATCC 43255] Length = 1155 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S +++ P+A + + LK + D GT HNI+ K+ + N Sbjct: 780 NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837 Query: 828 TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874 I + I+D K L + + + + ++ Sbjct: 838 LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897 Query: 875 QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921 Q S E I + KM +E + L G DR+D + G + I DYK+G Sbjct: 898 QGSFEPIDYEVKFGNNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + QL + A+ + + A + Y R+ I + Sbjct: 958 NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012 Query: 981 YSADELSEKSLKNLI 995 +E+ E LK L Sbjct: 1013 KDDEEIQEAILKELR 1027 >gi|255100076|ref|ZP_05329053.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-63q42] Length = 1155 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S +++ P+A + + LK + D GT HNI+ K+ + N Sbjct: 780 NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837 Query: 828 TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874 I + I+D K L + + + + ++ Sbjct: 838 LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897 Query: 875 QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921 Q S E I + KM +E + L G DR+D + G + I DYK+G Sbjct: 898 QGSFEPIDYEVKFGNNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + QL + A+ + + A + Y R+ I + Sbjct: 958 NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012 Query: 981 YSADELSEKSLKNLI 995 +E+ E LK L Sbjct: 1013 KDDEEIQEAILKELR 1027 >gi|254974591|ref|ZP_05271063.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-66c26] gi|255091982|ref|ZP_05321460.1| ATP-dependent nuclease subunit B [Clostridium difficile CIP 107932] gi|255313716|ref|ZP_05355299.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-76w55] gi|255516398|ref|ZP_05384074.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-97b34] gi|255649497|ref|ZP_05396399.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-37x79] gi|260682664|ref|YP_003213949.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196] gi|260686263|ref|YP_003217396.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291] gi|260208827|emb|CBA61745.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196] gi|260212279|emb|CBE03028.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291] Length = 1155 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S +++ P+A + + LK + D GT HNI+ K+ + N Sbjct: 780 NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837 Query: 828 TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874 I + I+D K L + + + + ++ Sbjct: 838 LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897 Query: 875 QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921 Q S E I + KM +E + L G DR+D + G + I DYK+G Sbjct: 898 QGSFEPIDYEVKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + QL + A+ + + A + Y R+ I + Sbjct: 958 NKSISLTEIYYGLQLQLLVYLDAILESAKDEDININPAAILYCRINN-----PIAKFNED 1012 Query: 981 YSADELSEKSLKNLI 995 +E+ E LK L Sbjct: 1013 KDDEEIQEAILKELR 1027 >gi|126698624|ref|YP_001087521.1| ATP-dependent nuclease subunit B [Clostridium difficile 630] gi|122379796|sp|Q18AP0|ADDB_CLOD6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|115250061|emb|CAJ67881.1| ATP-dependent nuclease subunit B (ATP-dependent helicase addB), Superfamily 1 UvrD-family [Clostridium difficile] Length = 1155 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S +++ P+A + + LK + D GT HNI+ K+ + N Sbjct: 780 NSLSISRLEKYAECPFAYFIQYGLKAKKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837 Query: 828 TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874 I + I+D K L + + + + ++ Sbjct: 838 LTWRDIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897 Query: 875 QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921 Q S E I + KM +E + L G DR+D + G + I DYK+G Sbjct: 898 QGSFEPIDYEVKFGDNGKYPPIKMVLENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG 957 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + QL + A+ + + A + Y R+ I + Sbjct: 958 NKSISLTEIYYGLQLQLLVYLDAILESAKDEDMNINPAAILYCRINN-----PIAKFNED 1012 Query: 981 YSADELSEKSLKNLI 995 +E+ E LK L Sbjct: 1013 KDDEEIQEAILKELR 1027 >gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter carbinolicus DSM 2380] gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter carbinolicus DSM 2380] Length = 1118 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 81/802 (10%), Positives = 181/802 (22%), Gaps = 113/802 (14%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIA 233 L A E V +A RA E I++ Sbjct: 361 EALTTLLPRAVAELWLVFKEQGQCDFVEVALAAGRALGEVDAPTDLLLHLDSRIRHILVD 420 Query: 234 GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + L+ + +G + D + + + Sbjct: 421 EFQDTSWGQFLLLKKLTAGWQQGDGRSLFLVGDPMQSIYRFREAEVGLYLQARHHGIHQL 480 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 + D + + D Sbjct: 481 RLEALYLSTNFRSQAGVVDWVNRVFPELFPPREDEALGSVTYAASVAARDVLDGPAVTCH 540 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF 409 + R EA+ + +R + + + A++ R ++ Sbjct: 541 PMAGRDD----------RAEALQVVDLVRQARRADPEGTVAVLVRARTHLSQILTAFREA 590 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ L+ + L +L A+ D +A +++ P + + Sbjct: 591 GLPFRAQEIDALADRSVAQDLLALTRALLHPGDRVAWLAVLRAPWCGLSLADLHALC--- 647 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 P + + + Sbjct: 648 ---------------------------------GETPDATLPELLRQPQRLMRMSADGRM 674 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + S G +S+ + L + + + L L Sbjct: 675 RVERCLGVLNQSLSQRGRVSLRMLVEGAWLAL------GGPGCLDDAGLVDAEALFGLLD 728 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ G + + + P TL ++ +++ L FDT+IL GL Sbjct: 729 QLDYGGDMLPMEG------LADKLSKLFAAPDPAADDTLQVMTIHKAKGLEFDTVILPGL 782 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY--------------------IGQAAHDFE 689 ++ +L L A + A + Sbjct: 783 GRRPRTEDAPLMRWLELPETGLLLAPLAPLDGQSRDPIYDAIGRVEKQKCDLEIARVLYV 842 Query: 690 MANGTRHLI--YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 A + + + + S GG+ G + +L Sbjct: 843 AATRAKKRLHLLGYARPSRDGEFRPS---------GGSFLEKLWPAVGDRFDGLNPELTD 893 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 ++ P R + + + + + + + D Sbjct: 894 SSDAPKTVRQMRLLGSDWVLPALPSTSAQSSMEVLSPSSTAHHSQGTTLMPETE--DGRH 951 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 GTL H + + + + + + + + + + + + Sbjct: 952 IGTLVHACLERIANEGLEHWSIGRVEKERPTLCHRLGRMGVAVDRCMQAADRIVEAVSNT 1011 Query: 868 LEHEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 L + EK + ++ + DR + K G + DYKTGD+ Sbjct: 1012 LNSDRGRWILGKHEKSACELSLSGVLDGR--IIHAEIDRTFVDKEGVRWVVDYKTGDSKG 1069 Query: 926 KE------TAQKLIDPQLSLEA 941 + QL L A Sbjct: 1070 MADDVFFEQQAHIYKGQLELYA 1091 >gi|324114887|gb|EGC08853.1| exodeoxyribonuclease V [Escherichia fergusonii B253] Length = 1122 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 108/973 (11%), Positives = 243/973 (24%), Gaps = 121/973 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ W ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D +W A K + L A +T Sbjct: 119 SDKRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLGEAQVWQAPLWKALVEYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ K Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGN 297 Query: 299 -LLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 +K + + V + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + +LL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728 E + L + R +N S +Q L+ G + Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770 + Q YL ++ P + P P T Sbjct: 773 EAKVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + + Sbjct: 833 LLESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ- 891 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + L ++ E I + + + Sbjct: 892 -EDSERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSM 941 Query: 888 KMAIESIGIHLTG 900 ++ + G+ LTG Sbjct: 942 EVDLNCNGVQLTG 954 >gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] Length = 1189 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 110/919 (11%), Positives = 242/919 (26%), Gaps = 84/919 (9%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G +++ L L +++ R + +KL ++ + + Sbjct: 262 GPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRYSKLVELFFNGGGKPKAESAFL 321 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLV 200 A A L ++ + D ++ L L + + Sbjct: 322 NAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYEALKKARS 381 Query: 201 ELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN---- 251 +L+ + AL+ A + + I++ + + PA ++ ++A Sbjct: 382 QLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFFA 441 Query: 252 ----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLA 297 + + D + + + S+ T Q S Sbjct: 442 GETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGNKHFSPIRLQLSFR 501 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 +D L GN ++ S + D++ + ++ ++ Sbjct: 502 STVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQPGAVDLWDVIAPEPAASEEDWT 561 Query: 358 DVALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLAR 400 A +A ER +A + L++ L+ Sbjct: 562 --APFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619 Query: 401 RVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 + L R I + + + L++ + L +L + D +++A L+K PL G Sbjct: 620 ALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDLGE 679 Query: 460 PEKYLSRAKNALELVALRGNKN----SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + + A+ R + L R + + +R+ Sbjct: 680 EDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRYSGLARELLPHDFYARVLGA 739 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNS-----TCGNLSISDWTKLTVTCLQNVCLDEHR 570 D L + L + T G + ++ ++ D+ R Sbjct: 740 DGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFISTLEIEAPTVKRE-QDKER 798 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 + K L + +++ G ++ V Sbjct: 799 DEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRF---LEKAQVDHSTLTVPVWRA 855 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 G+ + L+ D L L E + + + + + H Sbjct: 856 PGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNTDTW-HSMVQ 914 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + L + R + + + D + + + Sbjct: 915 GTLAQDLKGRGTPRLFRAGSEEWQGIAWREAHVPRDLPTSEGRSEESQRPTAGLPTALFT 974 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 P R P P + S I+DP A ++ Sbjct: 975 PPAAPRRLPRP--------LAPSGTTIAIDDPDA-------EVIVGSALFAGKSAPKFSM 1019 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L I+ L++ + + PE ++ + P R L+H Sbjct: 1020 LRGAILHRLLQVLPSVDGPERLAAAERYLARSV------PRWPEAERRALAGTVMDVLDH 1073 Query: 871 EEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKK 926 + E + + + ++G DR+ + V I DYKT Sbjct: 1074 ADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGD-MVTIADYKTNREIPETP 1132 Query: 927 ETAQKLIDPQLSLEAAALK 945 E + QL++ LK Sbjct: 1133 EEIAPVYRNQLAIYRELLK 1151 >gi|21673894|ref|NP_661959.1| exodeoxyribonuclease V, gamma subunit [Chlorobium tepidum TLS] gi|21647032|gb|AAM72301.1| exodeoxyribonuclease V, gamma subunit [Chlorobium tepidum TLS] Length = 1065 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 97/912 (10%), Positives = 219/912 (24%), Gaps = 92/912 (10%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V ++ + L G + +++ F L S Sbjct: 35 IVVQSRGMQRWLSMRLASQFGVWAGA--EYPFPNALIQRLFEWLELSKQADTERFSKETI 92 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 L R + + + L L+ +AD D Sbjct: 93 SWSLMRFLPDLLERDSFAPL----RAYLDGDRDGLKLFQLSGRIADTFDQYTLFRPDLLA 148 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-AEAEHLMKGTK 227 + W + W + E + Q A +R L Sbjct: 149 AWEAGGDDAARDWQP---------ELWRALVAEHSGKHRGQLQSAFLRKVRTTRLPADFP 199 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 I + G + P ++ +A + L T I + + + + Sbjct: 200 KRISLFGVSYMPPYHIEILQALAVRIPVNLFLLSPTREFWTDIVSRRRLFRMSESERALS 259 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT----- 342 +P LL L + L + + +++ Sbjct: 260 VEGNP------LLASLGKSGREFAELLLDVGNVEDEYDLYDDPGTATLLRALQSDILNLR 313 Query: 343 -DILENKIPNIQKCFSDVALIEADNEREEAIS----IAIALRMSLDENKKKSALITADRN 397 D + + P V + N E + L + ++T D Sbjct: 314 GDGTDGRHPMPDASDCSVQVHSCHNPLREVEVLHDNLLDLLDKLPGLEPRDIVVMTPDIE 373 Query: 398 LARRVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + I+ L + + LL + A+ L+ Sbjct: 374 TYAPYIATVFGASGPEEPRLPHSIADRRMLDEGGVAPAILKLLELYGSRHTAPALFDLLS 433 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD--------LKSLVLDRIATQKNNT 503 P F + R + ++ + Sbjct: 434 SPPVSRHFRLGEEELDTVRRWIKETRIRWGMDEGARSKLGLPPFRENSWRAGLERLLLGY 493 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 +P + + + + + + + +W L+N Sbjct: 494 AMPDEGRLFNGVLPFEVAGDAETLGKLADFIDAVDQLSTRFSRSRPLGEWRNHFFWMLEN 553 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + L + + ++ + + +A I + ++ + Sbjct: 554 FIEADADSERELAHVKSEIDSLTSLAE--NSRFEGEVSAQVMIAWLRGRLEQFEMGLGFM 611 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + L R + F + + G+N+G +P+ F + ++ Sbjct: 612 TG-GITFCAMLPMRSIPFRVVAMIGMNDGAFPRQQRPPGFDLLAREPRKGDRSVRGDDRY 670 Query: 684 AAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R + + + N P S + LL F + L Sbjct: 671 --LFLESLLSARDVFYLSYVGQSVRENTPLPPSVLVSELLDAIERGFEFPEGEDAASRLV 728 Query: 741 WTRKLD-----------------------YTTKQPHYKRP---KPFPPLEAQPRTYSFSE 774 +L + +RP +P + RT + + Sbjct: 729 VQHRLQGFSPAYFTKGSSLFSYSADNFKALAGRNSLAERPFIEEPLNGFTDEDRTVTLDD 788 Query: 775 IKQLINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + + +P A + R L L + ++ G + + EL++ + + Sbjct: 789 LARFFANPAAYFLERRLGLKPSAAVEPLEEREPFEVAGLERYAMRQELLEAVLEGHDGCA 848 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 M + S P + F ++++ + + + Sbjct: 849 ---MLPLFRS--RGLLPPATHGELLFRKLLVEVEEFATKVQELKGGGTFSQL----DIDL 899 Query: 892 ESIGIHLTGFAD 903 + G LTG D Sbjct: 900 DIGGFRLTGKLD 911 >gi|114319964|ref|YP_741647.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114226358|gb|ABI56157.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1184 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 105/901 (11%), Positives = 221/901 (24%), Gaps = 87/901 (9%) Query: 40 NPLLLASVTIYVPTKRAIQELRSEFIEI----------TGKKSTILPIIKSLGDVVEEKF 89 P L + T+ V + Q L S LP + E Sbjct: 33 PPAPLETETVLVQSNGMAQWLSHALAAHPESEEPGCGIAAGLSMQLPARFTWTAYRE--- 89 Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 +L + PP S + RL+ + L D L+ LA Sbjct: 90 ----VLGHEAVPPESPFDKRPLTWRLMRLLPE-LIDEPGFEPLRGFLARDDDRRKRHQLA 144 Query: 150 KNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS-KYWTERLVELNASS 206 + LAD++D + W + D + + W L +++ + Sbjct: 145 ERLADLLDQYQVYRADWLVDWAQGHDQCAGPGRAPRPLDARERWQPRLWRALLADMDEAE 204 Query: 207 PVGYQIALMR------AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + A+ E + G +I+ G + + +A+ + + Sbjct: 205 RGLSRAAIHARYREAVRELDRRPAGLPRRLIVFGISSLPHQVLEALEALADFTQILVCVH 264 Query: 261 GLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 H I + S ++ L + R+ ++ Sbjct: 265 NPCEHYWADIVADKDLLRARRRRQSPKPGMPERLDDSELHNHAQPLLAAWGKQGRDYIRL 324 Query: 313 LGNVSNEMYGRSMVISKSF-----------------LPPDTSDMRNTDILENKIPNIQKC 355 L + + R ++ S S+ L D ++R P + Sbjct: 325 LDEHDDPAHYRHLIESLSWQRIDLFRPHGGDCLLHQLQDDIRELRPLAETRAAWPPVAAD 384 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE------NKKKSALITADRNLARRVKLEL--- 406 + + A + + E + L ++ + ++ D + + Sbjct: 385 DASIQFHIAHSPQREVEILHDRLLGRFNDASRPTLRPRDVIVMVPDIDRYAPHIQAVFGQ 444 Query: 407 ----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFP 460 I +S L LL+ + L+ P +FG Sbjct: 445 TEPGDPRHIPYTLSDQGRRGRDTVLIALEQLLHLPESRCAVSELLDLLDVPALRRRFGLE 504 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLS 513 E L R E +R ++ L + V ++ Sbjct: 505 EGDLQRLHRWAEGAGVRWGLDAEQRAHLDLPAGLTLHTWRFGLRRMLLGYAVGSGEAWHG 564 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E + L +L + L+ + + L C + + Sbjct: 565 VEPYDEVGGLDAALLGPLEQLLATLEAAWARLREAHAPAVWGEHLRWLLAACFEPGNEEE 624 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 L E +TL + + +D + + + + Sbjct: 625 ALTLERLQQTLEQWTADCEAAALDEPLPLNVVREHWLAGMDEGGLSQRFLAGA-VNFCTL 683 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 + R + F + L G+N+G +P++ F ++ + + + Sbjct: 684 MPMRAIPFRLICLLGMNDGDYPRSPTPLDFDLMADDYRPGDRSRREDDRYL-FLEALLSA 742 Query: 694 TRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 L + R +N P S + +L + + L++ T Sbjct: 743 REQLYISWVGRSVRDNEPQPPSVLVGQLRDHLAAGWRLAGPVDEPSTPETAALLEHLTLA 802 Query: 752 PHYKRPKPFP------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 + P P Q R PD Sbjct: 803 HPLQPFSPVHFPVAGGPGARHFTYAREWRAVQAAAAGAEEGEVRPGIDRPDNEPLPPPDP 862 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINH---LMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 G L + +++ + + E + R + Sbjct: 863 DQAGVLAPGTLARFLQRPVRAFFERRLSVHFDEDEAASEDLEPFTVDGLTRWQLRERLVQ 922 Query: 863 I 863 Sbjct: 923 A 923 >gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 969 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 119/1000 (11%), Positives = 261/1000 (26%), Gaps = 143/1000 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIE------ITGKKSTILPI--------IKSLGDVVEEKFTA 91 +V T +A +E++ I +G + P+ I ++ E Sbjct: 41 NVVAITFTNKAAREMKDRVITEIDHRIASGHPGSWKPLRNKMSYAWISTIHSFCERILRE 100 Query: 92 DLL-LSYNLNPPVSNIQRLLELAR-LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 L + + + R L ++ + + ++ PL A + Sbjct: 101 SALFAGIDPGFQILSGMRRATLEEKVVRTYFEDNLESLE------PLIQLTGLDKAFRIV 154 Query: 150 KNLADIIDIIETEEKKWEDLHALK------NEKYGMWWLLAADFLKIASKYWTERLVELN 203 K I + + +L +++ A + +R V Sbjct: 155 KE--AISSKRHSLALNPSPVGSLLGDSIISDDEIIEGSKSFAAAYSEILSDYRDRTVRSG 212 Query: 204 ASSP----VGYQIALMRA-EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + L++ E + + I + + + ++ + + Sbjct: 213 FLDFDQLLTETRDLLLKMPEVQEKYRDRFKFIFVDEFQDTDELQSEIIRLLREESKNRVF 272 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + N T + + +L +L Sbjct: 273 F-VGDSKQSIYRFRGADVSVFNKTMKSFQNNGGELRNLRINRRSHPDLVTFQNKLFGKIM 331 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + S DI +++ I+ SD + A + R I L Sbjct: 332 KRDFENEFFRSIYDEDIESLPYQRDIESSRVRIIRTESSDDSREVARSVR---ALIEEEL 388 Query: 379 R--------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 A++ + + L + I S L Sbjct: 389 VFKTKTGEYEKRRIVPGDIAILLRTFSKISSYENALEKLNIPFYTVGSRNFYEQPEVSGL 448 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 S L+ + D + + + P E R+K DL+ Sbjct: 449 LSWLDLLVDPLDNNNLVSFLLSPAFGASLDEVLTLRSKR-----------------DLRR 491 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L L L++ L+ LS Sbjct: 492 LPLYFA--------------------------LMESKEDRFAHLIDLLKKFGKLKYILSP 525 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-- 608 S+ + V E LP L + G+ + + K++E + ++ Sbjct: 526 SEILEKFVQ--------ETDYLPKLATLKSGERMIANVKKLLELAKDLDRMGSSLRELSS 577 Query: 609 ----ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 D + E+S ++ IL +S+ L F +I+ G + + F Sbjct: 578 NIKAFIDSSDESEAALETEESDSVKILTVHKSKGLEFPIVIV-GDTFWKKKNSDRRLFFH 636 Query: 665 SRVMQSDLNLKTAEKYI--------------GQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + E+ + + + + R +I N Sbjct: 637 DGGFLISKSKPDREEGLIGSLASLEEEKEFEEEKRTLYVALSRAREMIII---SLNGRSD 693 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + W + + D ++ + + +D + Q +P P Sbjct: 694 SSRPWSKMICSSLLQSESDKVEASFEGIVKHFYPIDLPSIQETVYIEEPLLPEVTSVLPL 753 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKN 827 + S + ++ P ++ A +L + + G L H ++ + + Sbjct: 754 TDSSYIKYLS-PTSITADDEFELQSESYAGSPGLVKNAAGIGLLAHYLLEPVGVISKRGS 812 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIP 886 ++ I++ + + K+ + + H K E++F Sbjct: 813 ----VTTLESILNGGRPVSVDRINFNEYDLSEVKKVLSTLVAHPLIKEIEGAERVFSE-- 866 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 L G D++ LK G I D+K + Q++L LK Sbjct: 867 FHFQHGFGKYVLMGIVDKL-YLKDGKWRIVDFK--FASLNKRFINKYRFQMNLYLYILK- 922 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 D + L+ + D + + L Sbjct: 923 ------DLLSPIEATLLFLRDGKTEKIMLEDSDSFEKELL 956 >gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium meliloti 1021] gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021] gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] Length = 1189 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 110/919 (11%), Positives = 241/919 (26%), Gaps = 84/919 (9%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G +++ L L +++ R + +KL ++ + + Sbjct: 262 GPALDDYIDLGLRLGGAKPSAIADGLRAVRAIDDAATRYSKLVELFFNGGGKPKAESAFL 321 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF-LKIASKYWTERLV 200 A A L ++ + D ++ L L + + Sbjct: 322 NAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYEALKKARS 381 Query: 201 ELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN---- 251 +L+ + AL+ A + + I++ + + PA ++ ++A Sbjct: 382 QLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADFFA 441 Query: 252 ----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYSLA 297 + + D + + + S+ T Q S Sbjct: 442 GETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLTERRVRAGNKHFSPIRLQLSFR 501 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 +D L GN ++ S + D++ + ++ ++ Sbjct: 502 STVDVLSAVDTVFANPGNARGLSARSEAIVHASNRIGQPGAVDLWDVIAPEPAASEEDWT 561 Query: 358 DVALIEADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNLAR 400 A +A ER +A + L++ L+ Sbjct: 562 --APFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619 Query: 401 RVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 + L R I + + + L++ + L +L + D +++A L+K PL G Sbjct: 620 ALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALLKSPLLDLGE 679 Query: 460 PEKYLSRAKNALELVALRGNKN----SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + + A+ R + L R + + +R+ Sbjct: 680 EDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRYSGLARELLPHDFYARVLGA 739 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNS-----TCGNLSISDWTKLTVTCLQNVCLDEHR 570 D L + L + T G + ++ ++ D+ R Sbjct: 740 DGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFISTLEIEAPTVKRE-QDKER 798 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 + K L + +++ G ++ V Sbjct: 799 DEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRF---LEKAQVDHSTLTVPVWRA 855 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 G+ + L+ D L L E + + + + + H Sbjct: 856 PGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYRGQRQNTDTW-HSMVQ 914 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + L + R + + + D + + + Sbjct: 915 GTLAQDLKGRGTPRLFRAGSEEWQGIAWREAHVPRDLPTSEGRSEESQRPTAGLPTALFT 974 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 P R P P + S I+DP A + Sbjct: 975 PPAAPRRLPRP--------LAPSGTTIAIDDPDA-------EAIVGSALFAGKSAPKFSM 1019 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L I+ L++ + + PE ++ + P R L+H Sbjct: 1020 LRGAILHRLLQVLPSVDGPERLAAAERYLARSV------PRWPEAERRALAGTVMDVLDH 1073 Query: 871 EEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKK 926 + E + + + ++G DR+ + V I DYKT Sbjct: 1074 ADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGD-MVTIADYKTNREIPETP 1132 Query: 927 ETAQKLIDPQLSLEAAALK 945 E + QL++ LK Sbjct: 1133 EEIAPVYRNQLAIYRELLK 1151 >gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB18] Length = 1164 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 107/908 (11%), Positives = 229/908 (25%), Gaps = 81/908 (8%) Query: 68 TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELAR--LILIWRNKLPD 125 G ++ L +L + + L+ + P + + + AR L+ + + Sbjct: 270 DGDQAERLRQAATLTGNDQIARYLQIFLTKDFTPRKTLATKKITDARPDLVAAMKRECER 329 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 I L L+L + +A ++A + +D L + Sbjct: 330 IGPLLERRRALALRERTQALLVIASDVAADYAR------QKQDRGLLDYDDLID---KTL 380 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA--TA 243 D L S W ++ +IA T + A Sbjct: 381 DMLNRISSGWVHYKLDRGVDH--VLIDEAQDTSPRQWDIVDH---LIAEFTAGVGARDVK 435 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 R + V + G + + + N S + + + Sbjct: 436 RTIFAVGDEKQSIFSFQGASPREFALRRSALQTRFRNAELKFDPISFNYSFRSGAAILQS 495 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + + + S + P D+ + + AL E Sbjct: 496 VDHVFRDQAIYRSIHADTTYPIHESLADAGPSLIDLWELQQPDERQDLEGWRAPFDALPE 555 Query: 364 ADNEREEAISIAIALRMS--------------LDENKKKSALITADRNLARRVKLELTRF 409 E + + + + L+ + L R Sbjct: 556 TSPEVKLSQRVQAEIAELIGNGTLTGPKGDRRALRYGDVLILVRRRGKAFDAIIQALKRG 615 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 GI + + + L+ + L +L +A+ D +A+A +K PL + + + Sbjct: 616 GIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQR 675 Query: 470 -ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 AL + + L + + + L D A +L Sbjct: 676 KGSLRDALAAHAAEDGKFNTAHRRLQDCEKRARADTPFAFYAWLLGGDGGRARILRRLGH 735 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + L + S + W + Sbjct: 736 EATDALDEFLELALGYERKAPAS------------------LQGFMAWLRAADTEVKRDM 777 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + + ++ + T P + L L + L + G Sbjct: 778 EISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPADTQRLNLVHLPQGNAALSGPSVAVWAG 837 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 A +P + ++ + +T ++Y M LI N Sbjct: 838 --------KKADDPPVVANARAAMIAETEDEYRRL--LYVAMTRAADRLIVGGCQPGNRA 887 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQ--------CYLDWTRKLDYTTKQPHYKRPKPF 760 W + D + D P P P Sbjct: 888 EVRPLSWYDLICKGLEGSGLAMQTVPPPDGVVKRYCRQEDLVPEQDQAAAPPRVAAPAPQ 947 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 P + + + + + + P R + + + RG L H ++ L Sbjct: 948 PLPAWLNQPAAPTPLAERVLRPSDDADSRRSRAEDSSAPRAQ--ARQRGQLVHRLLQSLP 1005 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + + + + E + + L + + Sbjct: 1006 ELPRERRAAAAARYLARNAKDPVWTEPDRAALAVSVLALIDD------PRLAALFGPGSR 1059 Query: 881 IFVNIPAKMA-IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQL 937 V I ++ + + ++G DR+ + S V + D+KT P + QL Sbjct: 1060 AEVPIAGRLTRLGGDTVLVSGQIDRLLVTPS-EVLLVDFKTNQAPPRALAEIPSGYLRQL 1118 Query: 938 SLEAAALK 945 +L A L Sbjct: 1119 ALYRAVLA 1126 >gi|329946359|ref|ZP_08293926.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527335|gb|EGF54333.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1207 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 117/1117 (10%), Positives = 272/1117 (24%), Gaps = 216/1117 (19%) Query: 46 SVTIYVPTKRAIQELR---SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + PT+ LR + + + +++ + T L P Sbjct: 64 DALLLAPTRARADWLRGRAALLLREGYGDGVV--RVRTPAALALTILTTSLTKRPAPLP- 120 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 A ++L + + + S LP + L +++ Sbjct: 121 ----------APVLLAGAEEDSVLASMISVISWPGLPAETTGSRAFRSELRNLLARAGEL 170 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---ERLVELNASSPVGYQIALMRAEA 219 ++L L W AA+ L+ +R + Q + A Sbjct: 171 GITADELADLGRRLNVPIWGPAAELLRTWDAQGRPSADRRAQTRKMDTARLQDRAVEALR 230 Query: 220 EHLMK------GTKGPIIIAGSTGSIPATARLMSTVAN---HPNGAIVLPGLDCHIPTAI 270 +I+ ATARL++ +A + A + D + Sbjct: 231 SWDSDAVTDPPPVPDLVIVDDYQDCTAATARLLTALATPDPDGHRAQIAVLGDPDVAVET 290 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + T ++ A L R + + V+++ + + S Sbjct: 291 FRGGTPSLLVAAEDHSGLG-------ASRLQLTTCYRGNPETASVVADQSARVPVTGTAS 343 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---K 387 + R++ L + V I A + +E +A ALR+ Sbjct: 344 HRQTALAPPRSSSRLSEEPEREGTAPVGVEAILASSVWQERAHVARALRLEHVHRGTAWS 403 Query: 388 KSALITADRNLARRVKLELTRFGINID-ISAGIPLSTTLHSSILTSLLNAIFKLN----- 441 + A+I A + +L R G+ + + + L S+ L ++ A Sbjct: 404 QMAVIVRSSADAESLARDLRRRGVPLASRTPAVLLRAEPASAALLDIVRAAVSDQLGGGG 463 Query: 442 ---DFMAIATLVKHPLAKFGFPEKYLSRAKNALELV------------------------ 474 A L+ PL + R + ++ Sbjct: 464 ELPQREASVNLLTSPLVGLTTMDLRRLRRRLRQDMDTAGKGDGRAESAESSVSSESAGSA 523 Query: 475 -----ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 A R + L SLV D + + A +++ + Sbjct: 524 TATEAATRPGARTGADTVLLSLVADAGQAAAFARSLDGESLGVQASQLLTAARIIEALRT 583 Query: 530 CI-----TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + ++ + + + + TL Sbjct: 584 RLHGTPDDAPRDVEALLWAAWAASGRAEAWRSVALRSSSSSVRSLLSEAAEHDLDVVTTL 643 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 E A+ ++ ++ ++V P+ + + ++ ++ + Sbjct: 644 FKRAEVWAERHPGQDAS-SFLAELDAEVLPSDSVAPRGRRPEGVAVMTPARCAGQEWELV 702 Query: 645 ILGGLNEGVWPKNTAKNPF----------------------LSRVMQSDLNLKTAEKYIG 682 ++ GL WP ++ + + A+ Sbjct: 703 VVTGLERDRWPDLRLRDSLTRTGLLVDAVTDRLPAGANGPEAASEGSGAIAAARAQVRAD 762 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG------------------ 724 + + + + + S +L + G Sbjct: 763 ERRMLIMALSRATRRLLLTATAD--AEHAPSPFLTEIAQAIGIHLTDSDGAPILAPDTGD 820 Query: 725 -------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------- 758 ++RG+ ++ L Sbjct: 821 LILRGLVGELRHAAVAGNLETATPTERQRGRAAVELLADLARQDVPGADPAAWIGATGPT 880 Query: 759 --PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + + S S+++ L P + R D G+L H I Sbjct: 881 STTPLVAKGERIRVSPSDVEGLAACPLKWFLNRNGGSAP------ASDAQALGSLIHEIA 934 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH-IDIIWRHLFHKISHSFLEHEEKIQ 875 + + ++ + P + + + + + Sbjct: 935 ERAESEHLRG------AALRAAFEERLGDLGYPDTWLGGLAAERARAMIERLDAYLTECD 988 Query: 876 SSIEKIFVNIPAKMAIESI------------------------GIHLTGFADRIDLLKSG 911 + + V P + ++ + ++G DR++ L Sbjct: 989 ALGVRADVEHPVRADVDIPLQVLSPEVRGRVGVRMSVGGLDAVPVRISGRIDRLEHLGDH 1048 Query: 912 ---------------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + D KTG + Q+ PQL+ AL + Sbjct: 1049 AGQDLDDPAAPAGNSSARVIDLKTGQR-VPKDVQRH--PQLATYRLALASQGRDVTGGAL 1105 Query: 957 V---------ANLFYIRLKQKFKIDCITNDKKKYSAD 984 V + Y+ + +D ++ Sbjct: 1106 VLLGKEPSKRSGDGYVLVPPGAALDPSPASQEPADRP 1142 >gi|218550070|ref|YP_002383861.1| exonuclease V subunit gamma [Escherichia fergusonii ATCC 35469] gi|218357611|emb|CAQ90250.1| exonuclease V (RecBCD complex), gamma chain [Escherichia fergusonii ATCC 35469] Length = 1122 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 108/973 (11%), Positives = 243/973 (24%), Gaps = 121/973 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ W ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D +W A K + L A +T Sbjct: 119 SDKRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLSEAQVWQAPLWKALVEYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ K Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGN 297 Query: 299 -LLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 +K + + V + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + +LL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728 E + L + R +N S +Q L+ G + Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770 + Q YL ++ P + P P T Sbjct: 773 EAKVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + + Sbjct: 833 LLESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ- 891 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + L ++ E I + + + Sbjct: 892 -EDAERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSM 941 Query: 888 KMAIESIGIHLTG 900 ++ + G+ LTG Sbjct: 942 EVDLNCNGVQLTG 954 >gi|220919101|ref|YP_002494405.1| hypothetical protein A2cp1_4020 [Anaeromyxobacter dehalogenans 2CP-1] gi|219956955|gb|ACL67339.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 1079 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 143/1050 (13%), Positives = 283/1050 (26%), Gaps = 161/1050 (15%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L S T VP++R LR E ++ +L + LG TA + + Sbjct: 24 PLPSRTALVPSERHAHALRRELA--WTGRAGVLAGTRFLG-----PLTAAIEVLQAAGVA 76 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + L ARL+ +++ LP DL + A I +E Sbjct: 77 FTPGEGALRPARLLALFQEDLPLEHFDL---------ELLRTTRGWDEAFASAIGDLEAA 127 Query: 163 EKKWEDLHA--LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 DL A W A E A + A A Sbjct: 128 GLGPRDLPAEPAAARDLARLWSRA----------------EAGAGTSFSSARIFHEAAAL 171 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 P + G + + I + Sbjct: 172 LARDPCAWPF---------------------LGPTLALATGHEDAVHAGFLRAIPDVRLA 210 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + ++ H + +A+L + + ++L D + + Sbjct: 211 VQTARPIGERHLE-RVARLFGTDVRSALAARGPTGSPRAEKSTERDLLATYLLTDAAVLA 269 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLAR 400 + + P+ + A +EA+ E A+ +A + + ++ + L+ A LA Sbjct: 270 DPARPRSGGPDGTVDLEEHAGVEAELEAT-ALWVARQVLEARRPLEEIAILVPAQDPLAG 328 Query: 401 RVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 V L R + ++ G+P +T + + ++L A+ +A ++ L Sbjct: 329 LVADRLARLPFDGGPLPVFVAGGLPAISTAAGARILAVLRALRSHLSAETLAPVL-PALR 387 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + + + G + L Sbjct: 388 LDGIAGGDRTHLTHGEAMELAFGLGIVGGNPAHPAGALAWSERAAARAGELAAALAQVHA 447 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 D + A + + + L + ++ G + R L Sbjct: 448 DDDSAERERWRLERTLKSLRAIRPALDALVGVARKIVDGAPLAAVADVLGGFLARWLLAP 507 Query: 576 WFEEEGKTLSSLFSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + G+ + + + +I + G V +++ Sbjct: 508 GEGAALPARLAEALAPACAGTLGKALSGDDALQVIEDQLLGLRVAHGRFGEPAVYVGTVA 567 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-------KTAEKYIGQAAHD 687 + L F + + GL EGV P ++P + ++ L AE + H Sbjct: 568 GAAGLGFGAVRIVGLCEGVLPSQPREDPVVPGALREQLERGAPGRVVPRAEDRVAAQVHA 627 Query: 688 FEMA---------NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 A + R+ RE I + G + + + Sbjct: 628 LVAAVQGARDAVALSAPRVDLARTEREPGAIFIDAAAALARPHAGTGEPAEAVPDGAALR 687 Query: 739 LDW-------------------TRKLDYTTKQPHYKRPK--------------------- 758 D LD + P+ Sbjct: 688 RDAFRPAASAAARFRDAHPISDASWLDRVARTAAALPPEWTGAPVVDLARLAALRTPTGP 747 Query: 759 --------------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKD 802 P P A R S S + QL+ P RRIL D ++ Sbjct: 748 LGPSDGIFDGGGPFPPVPGIAPERPISASALGQLLQCPRLFLMRRILGWDEPAGAPSLRE 807 Query: 803 PDRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHFEKENLP-----PH 851 D G+L H ++ ++ + + + D FE Sbjct: 808 LDPLSFGSLLHRVVELFYREHGDAFSRREGTLGKWQLRARAVADRAFEGLLSEVPLVGEG 867 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-------KMAIESIGIHLTGFADR 904 + R H FL ++ + + V +P + + +H+ G+ DR Sbjct: 868 VRQKERERLHDALREFLAYDWE-GGPRRFVGVELPFGTPEAPLSVDADGQTLHVHGYIDR 926 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKL----IDPQLSLEAAALKAGSFSQIDCRKVANL 960 +D + G + D K+G + + D QL L A + + + KV Sbjct: 927 VD-AEDGVTLVRDLKSGKAHPRAGKEAGPTPLRDVQLGLYQLAARKLAKAWRTPVKVQGA 985 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKS 990 Y + +++ + ++ + + Sbjct: 986 -YAYASGRGEVEERAFRADAGALEQATAEW 1014 >gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] Length = 973 Score = 116 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 118/998 (11%), Positives = 262/998 (26%), Gaps = 155/998 (15%) Query: 50 YVPTKRAIQELRSEFIEITG-----KKSTILPIIKSLG--DVVEEKFTADLLLSYNLNP- 101 T++A EL S + + P I L + + LL + P Sbjct: 70 LTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVLTYNSFANSIYQDNALLLDHPVPY 129 Query: 102 -PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDI 158 + + + L RL++ L + ++ S I +AI NL D+ ++ Sbjct: 130 TAIEDSEAQLIARRLLVEH--GLDEDEPSETIDNLASSLIKLDDAI--VDNLLDLGELNQ 185 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 +E ++ K ++ L + S + Sbjct: 186 FASEFIEFVGAFDAPVAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVC 245 Query: 219 AE----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 + + +++ + P + T+ N VL D + Sbjct: 246 RQTHVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFG--NRCRVLAVGDPRQAIFGFRGA 303 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + + + + + L I + K + ++ Sbjct: 304 SVANIANFARDFVSNKQY---------ELSISWRNDKNILDL------------------ 336 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 + + P + +L + +E A+ L +++ +A++T Sbjct: 337 ---ANHISPKIRPLHPRPEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKG--TAAVLTR 391 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 R+ V L G++ A + + + S + I +N+ ++ L+ P Sbjct: 392 TRSRLISVSRVLDEIGVSYTR-ADVNIFYEPGVVDILSCMRIISGVNENLSFLRLITGPR 450 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + G + + R + + LDRI+ + + ++ +S Sbjct: 451 WQVGISDLHALR-----------------GYIAVGKKNLDRISLLEAVNRINIQKTPMSC 493 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E K+ ++ + I L + + S++ ++ ++ LD +L Sbjct: 494 EGKKRLEDFLEFFRK-IKGLSFLSPLELAYLIEESLNLDIEVQMSHRGRENLDALYELIA 552 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + + + F + E D I + + Sbjct: 553 SFRGDNLSEMLAWFDSLEEE------------DAFRGPIKQSCP-------GQVELFTVH 593 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------------------------LS 665 ++ L +D ++L L++ Sbjct: 594 SAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDSKEY 653 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 R + + I + +A S P R + L Sbjct: 654 RAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQFLREISEFLQTDLP 713 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781 N K+ Y + +E + +K LI Sbjct: 714 QAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESLKKEPLKALIAGMLKE 773 Query: 782 ----------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + A + + G FH I + E Sbjct: 774 LDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWIENYYSTYSDMLFHEN 833 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + I FE+ + ++ H+F++ E S + I V + + I Sbjct: 834 SADEYGISGPVFEQS-------QRFSPELDQLRHNFMQSEW---SYKKPIAVELSLEWLI 883 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 + + D + I D+K+G + + QLSL A + Sbjct: 884 --GDVIVPCTIDAVFFDGD-RYTILDWKSGLSSNQ------YRIQLSLYRLAFAE--WKG 932 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 ++ KV Y + + Sbjct: 933 VNPDKVEAKIYFAADNRTIKVRPYTVDELGKMPGFLSD 970 >gi|298245873|ref|ZP_06969679.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297553354|gb|EFH87219.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 1233 Score = 116 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 107/894 (11%), Positives = 245/894 (27%), Gaps = 104/894 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PP 102 A + +++A QE+ ++ ++ LP + + + L Sbjct: 303 AQILALTFSRKAAQEMEERLAQVLTRQ---LPKVSTFHAFCADLLRRYGELVGLRPGFTL 359 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + L +L +L +K P + I + E Sbjct: 360 LDEAEGYFLLRQL--SHSMRLKHYVKLSAPTFYFPDMLKA-------------ISRAKDE 404 Query: 163 EKKWEDLHALKNE--------KYGMWWLLAADFLKI--ASKYWTERLVELNASSPVGYQI 212 E+ L A L+I + + L G + Sbjct: 405 LITPEEYTRLAQAMFELAQGQDDTEVLERAEKALEIAQVYTLYEQALGRRGDCDFGGLLL 464 Query: 213 ALMRAEAEHLMKGTKGP-----IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 +R EH + +++ A+ L+ +A V D + Sbjct: 465 LTVRLLREHPEVLAEQQQVYQFVLVDEFQDMNRASGVLLRVLAGEAGR--VWVVGDANQA 522 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + + + + + + +S R ++ Sbjct: 523 IYGFRGASPANISQFAQDFPGAV----------------------ILPLSRNYRSRPDLV 560 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--N 385 S + T + + +N+ + + V L +A NE E I ++ + N Sbjct: 561 SLAEAFRCTYLDKGQEPGKNQPVRVAETGPYVTLAQASNEASEVAGIIADIQHKRRQGYN 620 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 K ++ R+ A+++ L + AG H + +L + M Sbjct: 621 YKDMMVLCRTRSQAQKITRALLEADLPTHERAGT--LEQEHVKDVLGML-LLLSNESGMG 677 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM-----DLKSLVLDRIATQK 500 + + + P + + V+ RG + + + ++ + +++ + Sbjct: 678 LLRVARLPDYRLSQEDIEALLLSAHERRVSPRGLLLTEEFPLDISSEGRNTLQRLVSSMR 737 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + +S+ + L+ D + + L ++ + Sbjct: 738 ALQQCNDTWTCMSQYLLQETSLVRDLLRHPEDEVAKGL--LLDYDRLLQLARHYDQQLEA 795 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + V E L L E K S ++ Sbjct: 796 RRRVLAQEAVSLEELSMEARLKGFLEYLSMLVVLRQDGAT-------------RESGEGE 842 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF-LSRVMQSDLNLKTAEK 679 E+++ + ++ S+ L F + + GL + +P + M N A Sbjct: 843 DEEEANIIQVMTVHASKGLEFPVVYMPGLVQNRFPLTYRSSAVNAPDGMLLAKNTGRAAH 902 Query: 680 YIGQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL-KKRGQC 737 G+A + A R HL+ + S R S +L L + L + Sbjct: 903 DGGEACLFYVGATRARDHLVLSYSERYGKKSYKRSLFLDPLEAAMPQERLAQLAWEAHGE 962 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + +R +P S S ++ P I D Sbjct: 963 IEERVEESLKPISIQPGER----FLDRMRPTDLSSSLVEVYRRCPRQYAYSTIYHFDGDA 1018 Query: 798 HFKKDPDRTDRGT--LFHNIITELIKKRINKNT--PEINHLMKQIIDSHFEKENLPPHID 853 + + + T + H + + E+ L K+ ++ + Sbjct: 1019 DAYRLFRQATQQTVEVLHKQLASMADSSQGTLPTFEELEALYKRHWRELGGEDMPFAPMY 1078 Query: 854 IIW-RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906 + + + E S E + + + +T DRI+ Sbjct: 1079 EAHGIEVVEGMRQKLVTQSETQWSMRE------SLHVDLAGRSVRVT--VDRIE 1124 >gi|78186858|ref|YP_374901.1| exodeoxyribonuclease V, RecC subunit [Chlorobium luteolum DSM 273] gi|78166760|gb|ABB23858.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium luteolum DSM 273] Length = 1075 Score = 116 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 106/938 (11%), Positives = 227/938 (24%), Gaps = 100/938 (10%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L L F P + + V ++ + L E G + V Sbjct: 13 VLAADLASYFAASPPA-SPFSREVVVVQSRGMQRWLSMELARRLGVWAGA--RYPFPNAV 69 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 V E F + + RL+ P I LS +P Sbjct: 70 VSELFRHVFPSKEDEAGRYDPECTTWSIMRLLPSMLRDEPFAILS----RYLSGSSAPLR 125 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELN 203 LA +AD D + L W W EL Sbjct: 126 LYQLATKIADSFDQYTLFRPEMLALWEAGEGTAGPDGWQSIL---------WRRLNAELG 176 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 I + G + ++S +A H + + Sbjct: 177 GRHRG-ILKEAFCRNGTLPDAVFPRRIALFGISYLPQFHLDILSAIARHREVNLFVLSPT 235 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 I + T +P LL L D + + R Sbjct: 236 EEYWGDIVSRRTLSGMTHAERELHAEGNP------LLASLGRIGRDFSDMVLEIPDEQNR 289 Query: 324 SMVISKSFLPPDTSDMRNTDIL------ENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 ++ +DIL E + P V + + + E + Sbjct: 290 TVERYIDPRRDTLLHAIQSDILTLSGTGEGERPVCSATDRSVQVHACHSPQREVEVLHDR 349 Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDISAGIPLSTTLHSSI 429 + L+ + ++ D + I ++ ++ SS Sbjct: 350 MLDMLESIPGLAPRDIVVMAPDIETYSPFITAVFGSAAEGRIPFSVADRRLMNEGEVSSA 409 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + LL + L+ P F +S ++ + + D + Sbjct: 410 VLRLLELHRSRASAPELFDLLSSPPVARRFG-LDVSALQSIRGWIVDTRIRWGIDEEERS 468 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELA-----------VLLVDHILQCITPLVTYK 538 L + + + +E + I + Sbjct: 469 MNQLPAFRQNTWRAGIDRLLLGYAMDSRESCCEGILPFEGVDGGAAETIGLFADFIDAVD 528 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ ++ +W ++ L++ L E F + + + Sbjct: 529 RFRHGLSKTRTLEEWRVFFISMLEHFMLTEEDSTR--EFLAVQDLMERMGEISRLSAYHD 586 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + I + + + + L R + F +++ G+++G +P+ Sbjct: 587 EVPPEVVIAWLQGRLQQKEQGLGFMTG-GVTFCSMLPMRSVPFRVVVMLGMDDGAFPRQQ 645 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI---YTRSLRENNIPTIASRW 715 F ++ E R ++ + R+++ P S Sbjct: 646 HPPGF--DLISRHPKRADRSVRAEDRYLFLETILSARDVLYISFVGRSRKDSSPIPPSVL 703 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKLDYT 748 + L F R + L Sbjct: 704 VSELFDAIDRGFLLPEGVRAEEMLLFSHPLQPFSPACFSAGGPLFSYSEENFLPHAEHSG 763 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP---HFKKDPDR 805 P P + ++ ++P A + R L L + Sbjct: 764 AGPEPLFMDSPLPEPGEPLQRVELMDLIGFYDNPSAFFLRYRLGLQPAGQVLPLDEREPF 823 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKI 863 G + I EL + + + + ++ D + LPP + D +++ L Sbjct: 824 GLDGLDAYRIRAELAEAML------LEGDIGRVQDRFRAEGVLPPALSGDRLYQSLLEDA 877 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + F+ +++ + + + L+G Sbjct: 878 A-RFVRSVQRLAPISLPLPA---LDFELPLGPMILSGR 911 >gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 1159 Score = 116 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 94/809 (11%), Positives = 187/809 (23%), Gaps = 104/809 (12%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIA 233 L +A E + A E +++ Sbjct: 366 EALFQLLPLAVAQLQLVFQERGEVDFTEVAQRAVVALGEAEAPTDLALTLDYQIRHLLMD 425 Query: 234 GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + + L+ + +G +L D + Sbjct: 426 EFQDTSLSQYILLERLTTGWEPGDGRTLLVVGDPMQSIYRFREAEVGLYLQAWR------ 479 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Q L L + G V + ++ + + + + P Sbjct: 480 --QGVGQLPLVPLTLSVNFRSHQGVVDWVNHAFRQILPATEEIATGAVPYSASHAFH--P 535 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNLARRVKLELTRF 409 + V + EEA + + A++ R + L Sbjct: 536 PRAEQAVQVHPFFGKDLAEEAEVVVRLVEKIKQAALNSTIAILVRSRGHLAEIVPLLREA 595 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ PL + L +L A+F L D ++ T+++ P + Y+ ++ Sbjct: 596 GLRFRALEIEPLGSRPVVQDLLALTKALFHLGDRLSWLTILRAPWCGLTLADLYILAGED 655 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 +D++ L Q Sbjct: 656 Q------------------------------------QAAIWDRIQDEDCIQRLSGEGRQ 679 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + + +S W + + L +P EE L Sbjct: 680 RLARVRRVLAKAFAGRRRVSPRRWVEGA-----WLALGGPACVPESTALEEASVYLDLLE 734 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + + P TL I+ ++ L FDT+I+ GL Sbjct: 735 QEAVADEILDF------RALDEGVGRLFAPPDKLADETLQIMTIHRAKGLEFDTVIVPGL 788 Query: 650 NEGVWPKNTAKNPFLSRVM--------QSDLNLKTAEKYIGQAA-HDFEMANGTRHLIYT 700 ++ + R L AE A + + + Sbjct: 789 GRSPRYESHQLLLWAERPASDSPSGNDNQLLLAPIAETGQQPDAIYHYIKGLHEEKASFE 848 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 T A L L + + L + + Sbjct: 849 NGRLLYVAVTRAKHQLHLLGQVVLDKTDQPKAPPKRSLLASLWPAVKEEFEVAAPSRRET 908 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYA---------------RRILKLDFIPHFKKDPDR 805 E + + SFSE LD I Sbjct: 909 CTQEEREDSLSFSEGGLFSRLSIQWQCPEPMPGVKTDIGGLPEAASALDPIEFDWAGETA 968 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 GT+ H + + ++ + P + + + + + ++ Sbjct: 969 RYMGTVVHRYLQLIAQEGLEHWNPARITGLGPALRRALMGQGVAANELENALERTQEVLK 1028 Query: 866 SFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 LE S + P + + DR + + G I DYKTG Sbjct: 1029 QTLEDPRGRWILSSDHRQALNEYPLSGILNGR--IIRAVIDRTFVDQEGVRWIVDYKTGS 1086 Query: 923 NPKK------ETAQKLIDPQLSLEAAALK 945 + + Q+ QL A + Sbjct: 1087 HEGSDREAFLDREQERYRLQLESYGALVA 1115 >gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] Length = 1125 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 84/818 (10%), Positives = 215/818 (26%), Gaps = 130/818 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237 F K + + + + A + + G I++ + Sbjct: 337 QFADAFLKRYALEKQKRGWLDFDDLILKARNLLTNPAVAAWVLYRIDGGIDHILVDEAQD 396 Query: 238 SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + P ++ +A + + D + + + + Sbjct: 397 TSPRQWDVIERLADEFYSGDGAREDDARTLFVVGDKKQSIYSFQGADPREFDHKQALFEQ 456 Query: 289 S--THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 Q + LD+ + +L + S + + + + S + L Sbjct: 457 KILEAGQIFQRRSLDYSFRSSSAILQLVDTSFAPHASAGFQADTTHKAFKSALPGRVDLW 516 Query: 347 NKIPNIQKCFSD------VALIEADNEREEAISIAIALRMSLD----------------- 383 + E + A IA ++ ++ Sbjct: 517 PLVAKSDDADDREWSDPVDQKSEHHHTVILADQIARQIKTLVEGDHYIPVDGDSAGVFER 576 Query: 384 ---ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L+ +L + G+ I + + + L L +LL+ + Sbjct: 577 RRIRAGDFLILVQRRSDLFSEIIRACKTAGLPIAGADRLKVGAELAVKDLAALLSFLATP 636 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D +++AT +K PL + + + + + ++ +L + Q Sbjct: 637 EDSLSLATALKSPLFGWTEQMLFTLSHYRSEDHLWQALRSSTE--HPETVSILKDLRAQV 694 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + R+ K L + + S Sbjct: 695 DYLRPYDLIERILTRHKGRRNFLARLGPEAEDGINAMLAQALSYER-------------- 740 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +W + + + + + + + ++ ++ +P Sbjct: 741 ----GAIPSLTGFLVWMQTDDLEIKRQIDNASDQIRVMTVHGAKGLEAPIVILPDTGKRP 796 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + + T +L + D + M++ L+ + + Sbjct: 797 LVIRDEIIKVDDTPVWKLSDAD---------------------MPSAMRAALDERKEREM 835 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN------LKKR 734 + + + + ++P S W Q + G + L+ + Sbjct: 836 NERLRLLYVAMTRAEKWLIVAAA--GDLPKDESSWYQMIGAAMGQAGAEPVGQTGVLRFQ 893 Query: 735 GQCYLDWT----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + ++ + T +P P + + +T S S++ Sbjct: 894 HGDWDGLPIRAKAQIPHVTPVLEPIFDQPVPAIPVREKTTSPSDLG-------------G 940 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 K + D G+L H ++ L + ++ + + D+ + L Sbjct: 941 AKALAGEDGLAEEDAKSYGSLVHQMLETLPLMQSDRW-DTVLKTLSDGYDAGVARAALDE 999 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 + ++ I + +P I + G DR+ + +S Sbjct: 1000 AVALMQNADIRHIFDA-------------DALAEVPITATIADK--RIHGTIDRLLVTES 1044 Query: 911 GFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 V DYKT E + + Q+ AAAL+ Sbjct: 1045 -SVLAIDYKTNRVVPHTTEACPEGLLRQMGAYAAALRQ 1081 >gi|239990572|ref|ZP_04711236.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length = 670 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 77/646 (11%), Positives = 147/646 (22%), Gaps = 65/646 (10%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A + + +++A ELR G + P + Sbjct: 41 TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 98 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ + + L + Sbjct: 99 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 155 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL + V A Sbjct: 156 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 215 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + G + + + PA RL+ +A + A Sbjct: 216 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 275 Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 A + D V L Sbjct: 276 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 335 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 G + + + ++ + + V E +IA LR + Sbjct: 336 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 395 Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436 E+ + + L+ A V+ LT G+ +++ PL + L + L A Sbjct: 396 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 455 Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460 + D TL+ PL Sbjct: 456 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 513 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 L R AL D P A Sbjct: 514 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 564 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L + + L T + + + + W +L Sbjct: 565 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGAGGRNADRDLDAVCA 624 Query: 581 GKTLSSLFSKIIETGSCI-KANAIEWIDIITRLIDGETVKPKIEKS 625 ++ + + ++ DI + T +P + Sbjct: 625 LFDTAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVRL 670 >gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC 7942] gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942] gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 1061 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 95/821 (11%), Positives = 204/821 (24%), Gaps = 122/821 (14%) Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214 + D + EE ++ + + K R + + Sbjct: 274 LRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGA 333 Query: 215 MRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 +RA ++ + + P ++++ + + P I+ D Sbjct: 334 VRALESEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQALWD-PQHLILTLVGDEKQSIYG 392 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + +L++ E + ++ + Y + Sbjct: 393 FRGAATQVFRNWQQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLDPYQPLRSDRQP 452 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384 P + E +EA +IA ++ + + Sbjct: 453 PHPLPPIQQLVIEPEEKDSLEQA-------------RIQEATAIAQQIQTWIQQPLLVWD 499 Query: 385 ----------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + L L L + GI + ++ G L T L +LL Sbjct: 500 KPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIPVLVNGGGSLLETPVGYDLQALL 559 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + ++ +A+ATL++ P + Y + + + + Sbjct: 560 EFLVYPSNDLALATLLRSPAFGLSDAQLYQRAQQGKGWWSH----RQERPDPAFAAAIKI 615 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 ++ + + ++ + Q L+ + + Sbjct: 616 LEGLLRSRFLESPLRLVQQFDRATGYSAVLASLPQA-QRLLADWQALLTFLREQPQAHDL 674 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 +L + + + ++ L + + + + + ++ +I Sbjct: 675 ELLLRYWKQL-------------QQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIP 721 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T KP+ + + L FDT + L + + A F Q + Sbjct: 722 DLTAKPRSQAETVL------------FDTELGVALRQPYVKEQAAAYQFFKYRKQQAEDA 769 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 +T + R L+ S A L L L Sbjct: 770 ETR-------RLLYVGFTRARDLLLLTS----PKSAEARSPLDLLAPGLEQAAIQPLDPN 818 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + T L ++ P S S P + R Sbjct: 819 SGTEIAVTATLPTADAPLFWQSTAAIAPQ---YSELSVSAFADYFRCPALFHFRYTQGHP 875 Query: 795 FI---PHFKKDPDRTDRGTLFHNIIT------ELIKKRINKNTPEINHLMKQIIDSHFEK 845 G L H + E +K ++ Q+ S F Sbjct: 876 GAIDGEGAGTSDRPLQLGLLVHRALELDLRQPEALKPYCAAEDQDLIPQALQLA-SCFAT 934 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 E + + + + + + S G+ L G AD + Sbjct: 935 EPVYSAVREQAQQR------------------------EVTLHLEL-SSGLVLKGRADLV 969 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 G + D+KT P+ E QL AAAL Sbjct: 970 -----GADWVLDFKTDQQPQPEN----YQLQLWAYAAALNR 1001 >gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli CNPAF512] Length = 1183 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 94/813 (11%), Positives = 214/813 (26%), Gaps = 78/813 (9%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAG 234 A + + E + + + + I++ Sbjct: 361 AALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGIDHILVDE 420 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P ++ ++A P + D + + + S T Sbjct: 421 AQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFSEESDRT 480 Query: 287 TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PP 334 S D L+ E + N V+ +S P Sbjct: 481 RRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGEPVVHRSSRIGHP 540 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------------RMS 381 D+ + E + A E+ A IA ++ + Sbjct: 541 GAVDLWDMVAPEAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVGRETIVDKGKER 600 Query: 382 LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L E L+ + L R I + + + L++ + L +L + Sbjct: 601 LIEAGDILVLVRKRDAFVNALTRALKRRGDIPVAGADRLVLTSHIAVQDLLALGRFLLLP 660 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D +++A ++K PL + + A + R A +K Sbjct: 661 EDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESVWSHLRKF----AADGNERFRAAVEK 716 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + ++ + + Q + L T ++ ++ + Sbjct: 717 LELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGL 776 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + E +++G+ + + ++A + +D G + Sbjct: 777 QFFISTLELEAPEVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGSKAF 827 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 L ++ T + + L + K+ A+ L+ L + Sbjct: 828 THTHLPKLRLIETDPDEPPMPAWVPVADLGNSLTQKDAARIQILAEEEYRRLLYVAMTRA 887 Query: 681 IGQAAHDFEMANGT----RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + H++ + +L E + A+ + G + +R Sbjct: 888 ADRLVVCGYRGVRANNDTWHMMISTALSEGHPHVEAASFSDPDGEWPGIRWRVPRVERSF 947 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 ++ + D +P PP PR S S +I++ Sbjct: 948 EGINRSEARDD-EISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVASPLFSEK 1006 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 + ++G L H ++ L ++ ++ P Sbjct: 1007 QRSDRSL---EKGRLLHRMLQALPDIPPDERPGAAQRYGERAAR-------FWPEA---E 1053 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVD 914 R L+ ++ E+ + + ++ ++G DR+ +L V Sbjct: 1054 RRKLVDSVLKLLDEKDLQPVLGEQARPEVSIMGTLMLDGRRYAVSGRIDRLAVLDD-RVV 1112 Query: 915 ITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 I DYKT P QL++ L Sbjct: 1113 ILDYKTNRVPPATEEAIPFAHRAQLAIYREILA 1145 >gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 115 bits (288), Expect = 4e-23, Method: Composition-based stats. Identities = 107/1022 (10%), Positives = 256/1022 (25%), Gaps = 168/1022 (16%) Query: 73 TILP-IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELA--------------RLIL 117 LP ++SL + LL P + +R++ L +L Sbjct: 205 VFLPERMRSLSQESDAPLLFSLLRENECTAPKMSERRIVLLGLLEELERTGTLSREQLED 264 Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177 + N ++ + P L K + +ID++ L Sbjct: 265 LKDNAKIQGARENHWPDPEVHHQVKEACERLRKEVGALIDVLT--------LDEEAVRLA 316 Query: 178 GMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIALMRAEAEHLMKGTKGPIII 232 + + A + + + + + + R A+ ++ + +++ Sbjct: 317 ARYGMQALRITESVVAAYEQAKQDRAMLDFDDLLLNLRDLLQTRPAAKEQLQKSTKFLLL 376 Query: 233 AGSTGSIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + P + ++ + + D + S Sbjct: 377 DEFQDTDPVQSEIVRAICGDRLTSGGLFLVGDVKQSIYRFRRADPTVFRQLRSEI----- 431 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 PQ L ++ + + + G ++F D T+ L P Sbjct: 432 PQKGQLALTKNFRSQQGVLDFVNFLFGPAMGEEYDALEAFDQTDYPPAEKTEFLFANDPE 491 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSL--------------------DENKKKSAL 391 + K + A + EA IA + L + Sbjct: 492 LTKPSAGEARVV------EAEWIAARIEELLSDPTPRVRKRDKATGEVTLRRVEPGDITV 545 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + L + ++ + AG + +L + D + +++ Sbjct: 546 LFRAFSNLGLYEDALRKRHLDYYVVAGRAFFAQQEVFDMVNLCRYLDDDTDETTLVGVLR 605 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 PL + ++ + S Sbjct: 606 SPLFGWNDD-------------------TIMQMGRQFGEFSPALLSDEMPAGVTTDQASA 646 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + L LL + I PL+ + + + L + V L+ + Sbjct: 647 VKSARRVLRELLGRRLSSGIGPLLRFAVEQTAYDAALMTEFLGERKVANLRKLLDMADDF 706 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + + A ++ I+ E E + + ++ Sbjct: 707 DQVGFL-------------------GMSEFADRLLESISEEAKEELAATHPESGNVVRLM 747 Query: 632 GTLESRLLNFDTLILGGLNEGVWP-----------------KNTAKNPFLSRVMQSDLNL 674 +S+ L F + + +N A+ + M + Sbjct: 748 TVHQSKGLEFPVVFVADVNRPSRNNTDTAVLSPVLGPLLGLPRGAETEQKNPGMMMHSHA 807 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS-------RWLQRLLVLGGTDF 727 + E + L+ + + S R+ + + G Sbjct: 808 EGLEDQAESIRLFYVATTRAADLLILSAYFDEETKASGSWMKLLQERFDLQTGLPHGDQL 867 Query: 728 FDNLKKRGQC---------------------------YLDWTRKLDYTTKQPHYKRPKPF 760 ++ G DW L T P Sbjct: 868 LGQTQQAGIERDRIPRIAVRSEIPQVAKPKKVPRKLKLADWDDVLATTEPVAPPAIALPL 927 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 P A +S SE++ + + ++ + + + G L H + + Sbjct: 928 EPDRAYRERFSVSELESVDSSFHSAMVTSGSTSNEASAAVRLREAELLGNLLHAALEQFD 987 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 N E + + P + F ++ S E K + Sbjct: 988 PALPPDNLSEFIERLATGFSDYIA-----PDLRETAVSRFRQLLDSDFILELKTAG---R 1039 Query: 881 IFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDP 935 ++ + + G D + G + DYKTG+ P Sbjct: 1040 LYRETEFLLRWSRPEVGRPAFIAGTVDCLLQDSEGAWHLIDYKTGNLPAEPSAVVDKFGL 1099 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI-TNDKKKYSADELSEKSLKNL 994 Q++L A + Q+ ++ +++ + + I ++ + ++++ L Sbjct: 1100 QMTLYA-----KAIEQLTGNPPRSIRIVQVNENPRTVKIDLTAERIRDFEAAIDQAIVFL 1154 Query: 995 IE 996 Sbjct: 1155 RS 1156 >gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2] Length = 1061 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 84/824 (10%), Positives = 219/824 (26%), Gaps = 98/824 (11%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARL 245 L R + ++ S V + ++ A + +++ + A +L Sbjct: 229 LADEYMAAKRRNLAMDFSDQVRFAQRILDEVPAARRAEQHRWKIVLLDEFQDTSVAQLKL 288 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + + V D W + + SS+ L Sbjct: 289 LR---DLFHSTAVTAVGDPRQAIYGWRGASADNMIRFSSDFHDVESL---------TLST 336 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + R+ V+N ++ L T ++ F V L Sbjct: 337 SWRNDHRILTVANRTANGLAGSRETPLSARTGAGEGDVAIDISSGAHDPDFLTVGL---- 392 Query: 366 NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 R +A + +A++ R V L G + + L + Sbjct: 393 --RSLTEWVASL------PDGSSTAVLCRKRAHFAPVAAALETAGYAVHVHGSSGLLSDP 444 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR--AKNALELVALRGNKNSY 483 + L ++L A ++ L+ L G + + + + Sbjct: 445 FVADLRAVLTAAVDPMAGDSLMRLISGRLLGLGATDIAALQSFTRRQNDSRVTEFLGEDP 504 Query: 484 DIMDLKSL-VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ---CITPLVTYKT 539 + + + + + V +++ A +V + L Sbjct: 505 ENSGVVPENIDQATIVEGLDELVDLFEALSGSAKFPGARAMVSNFRNSGLSELALKRLVR 564 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE---TGS 596 + S S + + + + + Sbjct: 565 LAQALRHVRSGSGTIASIIRTAMTETGVDTDIWGLSDSLRNLHRSAIDSFLSAASQYSAA 624 Query: 597 CIKANAIEWIDIITRLID--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + +++ ++ + + +V + + I+ S+ L FD + + L + Sbjct: 625 DDQPSVPGFLEWLSLMEEKDALSVAEPNSAAEAIDIMTVHASKGLEFDAVAVPSLVVKDF 684 Query: 655 PKNTAKNPFL------------SRVMQSDLNLKTAE----------------------KY 680 P + R D +L+TA+ Sbjct: 685 PTSPRDPEGWMERTALPYPLRGDRAHLVDYDLRTADFDTKKALDEWVNEFIKPAIADAHE 744 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + + +H ++ + P S +L + D D + + Sbjct: 745 EEERRLAYVAFTRAKHHLWLGAELMGARANPDEPSPFLMEAIEELNLD-VDMPEPADESA 803 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 D + + + P YAR+ L++ P Sbjct: 804 EDRVETSVWPVPRTALVSTARRAAEWVSRAAPTGLSELAQKPTPVGQYARQALRISSRPE 863 Query: 799 FK------KDPDRTDRGTLFHNI---ITELIKKRINKNTPEIN--HLMKQIIDSHFEKEN 847 + T + + + + ++ + + ++ HF + + Sbjct: 864 REGTGAVPDRLSATALVSWRRDPNDFMKQTLRPVPSPPSRAAEIGTTFHSWVEQHFGQAS 923 Query: 848 LP----PHIDIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + I ++ +F+ E + + + ++ + + G Sbjct: 924 IDIEDEQQVRPIDTATIERLQQTFIGSEFASRHAD----HIEMSFELVL--GRFRVPGKI 977 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 D + + ++ D+KT P+++T + + QL+L A++ Sbjct: 978 DAVFITGD-HAEVVDWKTSKLPEEKTLEVMKW-QLALYRFAIQR 1019 >gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469] gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469] Length = 927 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 89/854 (10%), Positives = 205/854 (24%), Gaps = 143/854 (16%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMST 248 + + E L + + + E K K +I+ A L+ Sbjct: 191 DVLEKYEEALDSYHRLTFGRLIYLAVNKIKEEPEKLPKISHLIVDEYQDINHAQEELIKL 250 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + + N +V D W + + + L Sbjct: 251 IGKNANIMVV---GDPRQTIYQWRGSDD-----------------QCFERFVTDL----- 285 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + +T + + + +I++ V +I + Sbjct: 286 ---YPDAENIVIPENRRSGKNIVTVGNTVADKFENRKFEHMISIKERNGYVYVILPETPD 342 Query: 369 EEAISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +EA IA ++ ++E L+ + GI + I L Sbjct: 343 DEARWIANQIQKLVNEKGLKYSDFGILLRSVGTSGDPFIKVFKGMGIPYIVGGTIGLFRR 402 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + + L N L K ++ Sbjct: 403 EEAMAVGKLFNW------------LYDGGFFKNYRG-------------KVTEYDELVDS 437 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 +D + + N + D + L K + + Sbjct: 438 ALDDWISATGLLEGEDRNDLKAKLLKWKMDVYSGTYPNFQDAYHALLNILDFKKLDPENK 497 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +++ + + W + L + T Sbjct: 498 IHAAIMANLGRFSNLLGDYENALRLGGNKLTWNKSNLNGLMWYINLYATTA--------- 548 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + + ++ I G + I +++ L + + + L +P + Sbjct: 549 YEEQLSEDIRGI---------DAVQITTIHQAKGLEWSVVFIPSLVSRRFPSSHVGEHKE 599 Query: 665 SRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + + + + + + + + + R S +L+ +L+ Sbjct: 600 WLISRELFPASRYDLQMDDERRLLYVAVTRAKSTLVLSAFRRITNKVKISPFLEEILIEC 659 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + + + + + T+ EI PY Sbjct: 660 ---------------PKIIKAISANSDVILDVDYEGTSGEDNDIYTFDAGEIVDYTKCPY 704 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 R I + + G H + ++ N P + + F Sbjct: 705 FYRLRHIWNYEAPLAEELG-----YGKALHYCLRRAVEIHKNGLNPFS--AILTAVKKDF 757 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 P H + ++ LE+ + IE + + ++ +TG D Sbjct: 758 YLPYAPSHKAEKMKEGAQRML---LEYVANNLNDIESVA-EVEYRLEFPQKNSTITGKVD 813 Query: 904 RIDLLKSGFVDITD---------YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 I D YKT K + Q+ L A LK + + Sbjct: 814 ----------VIIDRGENVEVREYKTSTKVTK---PHHVALQVHLYALGLKGLGYK-VGK 859 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 V Y+ + + ++SE +L N + + + Sbjct: 860 GSV---VYLS-------------ESRIDPIDVSEDALANARKYAEGILDNIHNQKYEPAP 903 Query: 1015 SEKSNIQSEYDHLA 1028 E +Y ++ Sbjct: 904 GEF-CENCDYRNIC 916 >gi|82778198|ref|YP_404547.1| exonuclease V subunit gamma [Shigella dysenteriae Sd197] gi|81242346|gb|ABB63056.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella dysenteriae Sd197] Length = 1122 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 114/1083 (10%), Positives = 260/1083 (24%), Gaps = 159/1083 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTFLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 ++ + G+ +TG+ + + G P + + QL LE Sbjct: 939 QSMEIDLACNGVQVTGWL--LQVQPDGLLRWR---------PSLLSVAQG--MQLWLEHL 985 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 A + D + +E++L L +++ + Sbjct: 986 VYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYR 1028 Query: 1003 NGE 1005 G Sbjct: 1029 EGM 1031 >gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1125 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 115/1053 (10%), Positives = 238/1053 (22%), Gaps = 150/1053 (14%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGK-----------KSTILPIIKSLGDVVEEKFTADL 93 V T++A EL + + P + + F + Sbjct: 93 PEVLGLTFTRKAAGELAERVRKRIEQLAASGLTEIEFDPFEAPDVATYNAFANAIFRENA 152 Query: 94 LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLA 153 L +L A + R + D D + ++ + L++ L+ Sbjct: 153 LFIGREPEAA-----VLSEASAWQLARRVVVDSADDRLADLDRNVDAVTTAVLNLSRALS 207 Query: 154 DIIDIIETEEKKWE------DLHALKNEKYGMWW--------LLAADFLKIASKYWTERL 199 + I + E DL K G + + A L ++ + E Sbjct: 208 ENIAGAAEVGRMAEGFGRVIDLPTGSARKAGPYATVKAAVETVGALPSLLGLAERFAEEK 267 Query: 200 VELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + + +++ + RL+ST+ + Sbjct: 268 RRRGFVEYSDQVALALAVCERLPDVVDDYRRRYRVVLLDEYQDTSVVQTRLLSTLFS--- 324 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 G V+ D H W + + + +++ T +R D L Sbjct: 325 GEAVMAVGDPHQSIYGWRGASAANLSRFATDFTG---------------RPRRADEYVLS 369 Query: 315 NVSNEMYGR--SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + I + L + + + +E + E A Sbjct: 370 TSWRNPTRVLDAANILVAPLGAVSPVRVERLRARPGAVAGELACTFGQTVEEEAEAIAAW 429 Query: 373 SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 R + +A++ L+R + + L + L S Sbjct: 430 FAERIARRDAEGTLPSAAMLCRSIKKIEVFTAALSRHRVPFHVLGLGGLLEQPVIADLVS 489 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRGNKNSYDIMDLKSL 491 L + + L+ + G + R L R + D+ D Sbjct: 490 ALRVMHDPTAGSELIRLLTGARWRVGPKDIAALRRVASWLAGCDHRFQELEPDVRD---- 545 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 R + + E E L + + + + Sbjct: 546 -RLRRSVAGEESASLVDALDFVVEAPEGHRQLSAFSGSGVERMRAAGRQLDQLRSRAGLD 604 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 +T+ + E + + + Sbjct: 605 LLDLVTIVQQELRLDIEVAANETAQLGQASLDAFAEQVASYLASDDRATLGSFLSWLAEA 664 Query: 612 LIDGETVKPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-------NPF 663 + + IL S+ L +D + + L EG P Sbjct: 665 EKRDNLAPRSEDPEPGTVQILTIHGSKGLEWDVVAVPRLVEGELPVPPQSRRGWLAFGQL 724 Query: 664 LSRVMQSDLNLK------------------------TAEKYIGQAAHDFEMANGTRHLIY 699 + L A Q + R + Sbjct: 725 PNEFRGDSAELPVLPWRTVEDQKALDGAIADFEAENLARHRDEQRRLVYVAVTRARESLL 784 Query: 700 TRS--LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 + P +L+ L G + Sbjct: 785 LTGSYWSTQSRPRGPGAYLRELQGAGLIAGDAFPPCDDPEDNPLAPASRTVSWPLDPLGA 844 Query: 758 KPFPPLEAQPRTYSFSEIKQ-----LINDPYAVYARRILKLDF----------------- 795 + A S D + A R + Sbjct: 845 RRRSVETAAEAVRSARARGAGDGGVYARDLDLLLAERARRPSESGLVELPARIPASRFKD 904 Query: 796 -------------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 P ++ +T GTLFH + E + Sbjct: 905 YVSDPAGVASALRRPMPERPYRQTRLGTLFHRWVEERYGTVAGRADELDATA-------- 956 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 E P +I+ + +F E ++ + ++ I G + Sbjct: 957 --HELDDPAGEILEAERLADLQATFAASEWAARAPD-----EVELEIHIALAGQVVVCKL 1009 Query: 903 DRIDLLKSGFVD--ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 D + + G D I D+KTG P QL+L A ++ I+ ++ + Sbjct: 1010 DAVYRIADGRHDYQIVDWKTGRAPHDVGDLDRKQLQLALYRLAFAQ--YAGIEPERI-DA 1066 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 + + + ++ A+ + Sbjct: 1067 VFYFVADDAVVRPSRLYSERELAERWQAAVAER 1099 >gi|325498398|gb|EGC96257.1| exonuclease V subunit gamma [Escherichia fergusonii ECD227] Length = 1111 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 108/971 (11%), Positives = 241/971 (24%), Gaps = 121/971 (12%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + AL+ + DP P I V + Q L+ + G + I L Sbjct: 2 LEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMALSQKFGIAANIE---FPL 53 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +L + +L L+ W ++ + L+ Sbjct: 54 PASFIWDMFVRVLPEIPKESAFNKQSMTWKLMTLLPQWLDREDFTLL----RHYLTDDSD 109 Query: 142 PANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 L+ AD+ D +W A K + L A +T L Sbjct: 110 KRKLFQLSARAADLFDQYLVYRPEWLSQWEAGKLVDGLSEAQVWQAPLWKALVEYTAELG 169 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + + I G + P + + + H ++ Sbjct: 170 QPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 228 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-------------------L 299 + I + ++ K L Sbjct: 229 FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRKGVDAEKLFNSEGEQDVGNPL 288 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDI 344 L D L + + + + Sbjct: 289 LASWGKLGRDYIYLLSDLDNSQELDAFVDITPDNLLHNIQSDILELENRAVAGVNIEEFS 348 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLAR 400 +K + + V + + E + L L+E+ + ++ AD + Sbjct: 349 RSDKKRLLDPQDNSVTFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYS 408 Query: 401 RVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + IS + +LL+ + L+ P+ Sbjct: 409 PFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFITLLSLPDSRFVSEDVLALLDVPVL 468 Query: 456 KFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVP 506 F E+ L + + +R + ++ +L+ + Sbjct: 469 AARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMES 528 Query: 507 HWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 S + + L + + + L+ + + +W + L Sbjct: 529 AQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFF 588 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 L + + ++ ++ + D + + +D E + + Sbjct: 589 LPDAETEAA--MTLIEQQWQAVIAQGLGAQYNEAVPLSLLRDELAQRLDQERISQRFLAG 646 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 647 P-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPRRGDRSRRDDDRY 703 Query: 686 HDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF-------------- 728 E + L + R +N S +Q L+ G + Sbjct: 704 LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDESEA 763 Query: 729 ----------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTYSF 772 + Q YL ++ P + P P T Sbjct: 764 KVKAHITCMHTRMPFDPQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPFEMPSTLLL 823 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTP 829 +++ P + + L+++F + PD G + I +L+ + + Sbjct: 824 ESLQRFWAHPVRAFFQMRLRVNFRAQESEIPDTEPFTLEGLTRYQINQQLLNTLVEQ--E 881 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + L ++ E I + + + ++ Sbjct: 882 DAERLFRRF---RAAGELPYGAFGEILWETQCQEMQQLADRVIACRLPG------QSMEV 932 Query: 890 AIESIGIHLTG 900 + G+ LTG Sbjct: 933 DLNCNGVQLTG 943 >gi|282163632|ref|YP_003356017.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE] gi|282155946|dbj|BAI61034.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE] Length = 1087 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 60/185 (32%), Gaps = 19/185 (10%) Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI-PHFKKDPDRTDRGTLFHNIITELIK 821 + + S S +K + P R+L++ ++ GT H + Sbjct: 825 FDPEEVVLSHSSLKIYRDCPKKFELARLLRMPSRYDDEEEGEGALGFGTFVHEALE---- 880 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 KN + + I ++ P I I +F + Sbjct: 881 -LAAKNKVKSRQELDDIAAELLKE----PGYKDIDVKRAKVIFDTF--WARNRTKLGNVV 933 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 + G +G DR+D L +G V+I DYKTG P KE + QL L Sbjct: 934 MTEQAFSFEL--GGFRFSGKIDRVDELNGNGEVEIIDYKTGREPSKEDRES----QLLLY 987 Query: 941 AAALK 945 A + Sbjct: 988 KLAFE 992 >gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707] gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani ATCC 19707] gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 1146 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 94/832 (11%), Positives = 200/832 (24%), Gaps = 79/832 (9%) Query: 150 KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202 + L D + +E EE LH L W L +A E Sbjct: 327 RALLDCLARLEGEEALRRALHGLRFLPSASYTAAQWQLMEALFQLLPLAVAQLQLVFQEQ 386 Query: 203 NASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATARLMSTV---AN 251 + A E +++ + + L+ + Sbjct: 387 GEVDFTEVAQRAVVALGEAEAPTDLALALDYQIRHLLMDEFQDTSLSQYILLERLTLGWE 446 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G +L D + + D Sbjct: 447 AGEGRTLLVVGDPMQSIYRFREAEVGLYLQAWWQGVGLLPLTPLTLSVNFRSQQGIVDWV 506 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 I T + + P + E + E Sbjct: 507 NQSF---------RQILPVAQEIATGAVPYSQSHAFHPPLMAPAVQIHPFFEKGSLAEAK 557 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 + + + A++ R + L G+ PL + L Sbjct: 558 RVVHLVQQTRQAAPNSTIAILVRSRGHLAGIVPLLREAGVGFRALEIEPLGSRPIVQDLL 617 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 +L A+F L D ++ T+++ P + Y+ ++ V R + I L Sbjct: 618 ALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAVWDRIQE-DACIQGLSEE 676 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 +R+ + + L E + V+ + + + ++ + Sbjct: 677 GRERLGRLR-----QVFAKALGERRRTSPRRQVEGVWLALGGPACVTDSIALEEASVYLD 731 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 L+ + E + + + ET + + + ++ T Sbjct: 732 --------LLEREAVAGEILDFRALEESVAQLFAPPDKEADETLQIMTIHRAKGLEFDTV 783 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 ++ G P+ E L D L L + +++ + + Sbjct: 784 IVPGLGRPPRHESHQLLLWAERPTVHYPTGDDGAL--LLAPISGAGRSQDSIYQYIKR-- 839 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 L + + +H ++ + + V +L Sbjct: 840 --LHEEKGEFENGRLLYVAVTRAKHRLHLFGQVDLDDTGKP-------KVPSKHSLLASL 890 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY----- 786 + + T L T+ R + S + P + Sbjct: 891 WPAVKGKFEATALLQRETENREEGR-----DPGDSSISGFISRLSTQWQCPAPIAGVKAD 945 Query: 787 ----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 LD I GT+ H + + + + + + Sbjct: 946 IEVLPEAASALDPIEFDWAGETARHIGTVVHRYLQIIAGEGPEHWSLARITALAPALRQA 1005 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLT 899 ++ + P+ ++ LE S+ + + + Sbjct: 1006 LMQQGVMPNEMENAIERAREVLRQTLEDPRGRWILASNYRQARNEYSLSGVLNGR--IIR 1063 Query: 900 GFADRIDLLKSGFVDITDYKT------GDNPKKETAQKLIDPQLSLEAAALK 945 DR + ++G I DYKT G Q+ PQL AA + Sbjct: 1064 AVIDRTFIDEAGVRWIVDYKTGVHEGGGREEFLNREQERYHPQLERYAALMA 1115 >gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 1139 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 78/811 (9%), Positives = 189/811 (23%), Gaps = 85/811 (10%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAG 234 + + ++ + A ++I Sbjct: 333 KVLTLARAHAAFYEAAKAQRGALDFPDLVARAAALLTRSGAAAWVLYKLDGGVDHVLIDE 392 Query: 235 STGSIPATARLMSTV-----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY- 288 + + P ++ + + +G V D + + ++ Sbjct: 393 AQDTAPEQWAIVRALTGEFYSGQTSGRTVFAVGDEKQSIYSFQGARPERLRQERADFLAL 452 Query: 289 -------------------STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + + + D R G+++ + R Sbjct: 453 AEGAGEPFAGPELNTSYRSTEEVLAFVDAVFADPDRTRALTGPQGDIARHIPARIGQHGA 512 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE---------AISIAIALRM 380 L P D + P Q+ A + E A+ + + Sbjct: 513 IDLWPLFLDEPAPETEAWDDPVDQESVGSARKRLARDLAREIRRQVESGLAVFDSRTREL 572 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L+ + L G+ + + + LS+ + L +L Sbjct: 573 RPAGYGDYIVLVRRRDATFEEIIRALKTEGVPVAGADRLKLSSHIVFDDLIALARFALFP 632 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 +D +++A +++ PL Y + K DL+ +R + Sbjct: 633 DDDLSLAEVLRSPLCDVDEDGLYALAGR--------ENRKAGQLWRDLRDRAHERPEWTR 684 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + + ++ + + ++ + + Sbjct: 685 ARDALQAAIAARGGDPFAFFSQALNRVDDTGRSGRARILARLGREAEEAVDETLNQILAA 744 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +D L L + + + + ++ ++ T+K Sbjct: 745 ENRGAIDLETCLAQLE--AADVEVKRELEGARGEVRVMTVHGAKGLEAPIVILPDTTMKA 802 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 K L+ TL G + P + + S ++ +T ++ Sbjct: 803 KA-----------QGPSLMPAVTLEGEGEAWLMAPGSAKDDCPASADARAARQARTDDET 851 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 + + R + + S W + G Sbjct: 852 L---RLLYVALTRARDRVIVMGRASSRGAEPGSWWSVIEETFDRLGEQVREVENGVRRFG 908 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + T P P + + ++ L Sbjct: 909 VDPERRPVTTAPDRTTAALPIWATTPPPADAAARFAAPSRMEGSIRIPAPSPLARSAAGG 968 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 R RG L H ++ L + L+ + D + Sbjct: 969 ASLGRFRRGDLIHRLLERLPEIAPADRPDAARRLLARETD-------------LDDAQRG 1015 Query: 861 HKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITD 917 I+ +F ++ + + A+ + + G DR+ + V + D Sbjct: 1016 EMIAAAFSVLDDARFAPVFGPGSRAEVALTGALPGPSSVAINGRIDRLVVTPD-RVLVID 1074 Query: 918 YKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946 YKT Q ++ A LK Sbjct: 1075 YKTNRPAPDALDRVDPAYVLQAAVYVAVLKR 1105 >gi|309775327|ref|ZP_07670335.1| hypothetical protein HMPREF0983_00829 [Erysipelotrichaceae bacterium 3_1_53] gi|308916909|gb|EFP62641.1| hypothetical protein HMPREF0983_00829 [Erysipelotrichaceae bacterium 3_1_53] Length = 691 Score = 115 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 116/382 (30%), Gaps = 24/382 (6%) Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 +D + + + + ++ + L G + +P K + + Sbjct: 192 LDDISQSSAPSQRKGVIVSDLRQAPFCR-EHQFLLGCTQKDYPAFQTKKGIFDENYHAFI 250 Query: 673 NL-KTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 + T E +Y H+ + L + + V + Sbjct: 251 STYPTMEQRYQFYLEQISAQLYAAPHIYVSYPLGTYEGKGMEAALEIEEFV---RKLLHD 307 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 K + Y + +T + S S +++ + P++ + R Sbjct: 308 PKAKSSPYPLYGSYEPVSTNITLSPAMAEALFVRDGNIHGSISALERYVKCPFSYFLRYG 367 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-KENLP 849 L L GTL H ++ ++ + T +++I+ +++ Sbjct: 368 LSLREPMKVGFPDSYA--GTLSHYLLETFTEEYGKEYTRVAEEKIEEILMKEITVMQDVF 425 Query: 850 PHIDIIWRHLFHKISHSF-----LEHEEKIQSSIEKIFVNIPAKMAIESIG---IHLTGF 901 P ++ ++ +I S L E + S + I + L G+ Sbjct: 426 PSLEKKLENVAQRILTSMTQTLSLLDEYEQHSLLSPYQSEKEFHYQIPLNEKVNLALKGY 485 Query: 902 ADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 DRID F+ I DYK+ + + QL A + + F + +V Sbjct: 486 IDRID-TSDEFLCILDYKSSAKTLSQTNVFAALQLQLLTYA-IVCSKEFQK----RVLGA 539 Query: 961 FYIRLKQKFKIDCITNDKKKYS 982 FY+ LK + ++ Sbjct: 540 FYVSLKNENIPYTAGKLSRRKP 561 >gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup] gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup] Length = 779 Score = 115 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 92/746 (12%), Positives = 198/746 (26%), Gaps = 122/746 (16%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 M+ + P + + R + + R +P + T +A +E+ Sbjct: 55 MNTEGPLLVLAGAGTGKTRVLTT-----RISHILRSGLASPQ---QILAVTFTNKAAREM 106 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 ++ E+ G +P + + + ++R EL L + Sbjct: 107 KTRIGELIGGVVEGMPWLGTFHSTGAKI-----------------LRRHAELVGLKRNFT 149 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 D + L + L + W A+NLA +ID + + E + +G Sbjct: 150 ILDSDDVLRLLKQ--LIQAEGLDDKRWPARNLAMMIDSWKNQGLSPEHISKSDAHSFGN- 206 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGS 235 + + RL +LNA + + + I++ Sbjct: 207 -----GMGRELYHSYQNRLKDLNACDFGDLLLHSISIFQHNPDILREYHSQFRYILVDEY 261 Query: 236 TGSIPATARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 + A + +A HP G V D W ++ + P Sbjct: 262 QDTNTAQYLWLRLLAQHPQGQHVNLCCVGDDDQSIYGWRGAKVENILRFEKDF-----PS 316 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + +L +K ++ R + I+ Sbjct: 317 AKIIRLERNYRSTSHILKTASHLIAHNEERLGKV-------------------LFSAQIK 357 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGI 411 V + A + +EEA +I + + A++ R + G+ Sbjct: 358 SEEEKVKIHSAWDSQEEARAIGEEIEQAHQTGHALNHMAILVRASFQMREFEDRFVTLGL 417 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 N + G + + L + + D +A ++ P G Sbjct: 418 NYRVIGGPRFYERMEIRDAMAYLRVVVQPADDLAFERVINTPKRGIG------------- 464 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + + + + + E EL + I Sbjct: 465 -----------------DATLRILYESARARAVPLFSAAADIIETDELKPKARSALRSLI 507 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 ++ T + + L K + + Sbjct: 508 ENFRRWQNMLQDTPHKELAEIILDDSGYTTMWLEDRSPEAPTRLEN---LKEMIRSMEQF 564 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 +++ + ++D E E + + I+ ++ L F+T+ L G E Sbjct: 565 EN--------LQSFLEHVALVMDAEN----NENTDAVNIMTLHSAKGLEFETVFLPGWEE 612 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IP 709 G++P + + + E+ A A H+ + + R + Sbjct: 613 GLFPHQRSLD---------EGGRSGLEEERRLAYVGLTRAKKHLHIWFVSNRRIHGLWQS 663 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRG 735 T+ SR+L L G Sbjct: 664 TLPSRFLDELPAEHIEAIAMETSYGG 689 >gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] Length = 1161 Score = 115 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 98/856 (11%), Positives = 218/856 (25%), Gaps = 76/856 (8%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172 L + + + L L+L + +A +A I + E ++DL Sbjct: 317 LAERLQREGARLAGLLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 L + W ++ + + Sbjct: 376 ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G+ R + V + G + + + T + S + Sbjct: 424 TAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAEWRDLLQRRFTGAGLTFEKVSFNY 483 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + + + + + S + P + D+ ++ +++ Sbjct: 484 SFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIE 543 Query: 353 QKCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNL 398 A+ E E A + + R L+ + Sbjct: 544 GWQAPFDAVSETSPEVRLADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRRGSA 603 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V L R GI + + + L+ + L L +A+ D +A+A +K PL Sbjct: 604 FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMKLADALLLPQDDLALAVALKSPLFGLD 663 Query: 459 FPEKYLSRAKNA----LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + + L + + + + A + W Sbjct: 664 DDDLFKLAWQRKGSLSAALADHAAGDSKFAAVQRRLESYAARAQAETPFGFYAWLLGGDG 723 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 D A +L + L + S + S + Sbjct: 724 SDSGRARILRRLGPEANDALDEFLELALSFEQKRAPS------------------LQGFV 765 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 W E + + + + + ++ + T P + L L Sbjct: 766 AWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGG 825 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + + ++ G A +P + +S + +T ++Y M Sbjct: 826 NAAPGSVAAMVWAG--------RKADDPHIVEQARSAMIEETEDEYRRL--LYVAMTRAA 875 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTK 750 LI + N W + + + Y ++ Sbjct: 876 DRLIVGGCMPGNRNEVRPHSWYDLISKGLESSGLVMQPVPPEGVIKRYCRPEDVIEEIGT 935 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + + R + + P +L RGT Sbjct: 936 VSQGQELAVTHLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGT 995 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L H ++ L + + + + E++ ++ + + F Sbjct: 996 LVHRLLQSLPEIAVADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARFAAVF--- 1052 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 S + V I ++ + ++G DR+ + ++ V I DYKT P + A+ Sbjct: 1053 -----GSGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAE 1106 Query: 931 KLID--PQLSLEAAAL 944 QL+ A L Sbjct: 1107 APRSYVRQLARYRAVL 1122 >gi|313682830|ref|YP_004060568.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994] gi|313155690|gb|ADR34368.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994] Length = 817 Score = 115 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 56/465 (12%), Positives = 132/465 (28%), Gaps = 55/465 (11%) Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + ET P +++ +++ + F +I G + +K FLS Q + Sbjct: 341 LAEETYIPPLKEDYGIWVAEPNQMTQHVFKHIIFIG-TDLSVFPPKSKGNFLSTPDQREH 399 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 L Y+ + ++ L + +L+E S + L V+ + + Sbjct: 400 YLGVDNSYLLSQYYFDQLRRNCESLHISTALQEGKKKLFISPIITDLPVIRLEGYEMESE 459 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRP-------KPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + + + + S S + + P Sbjct: 460 NEYLLHHRRFHQDERFEEYVSSMHANETGHYDGLLSEHRFESGVLSASSLNEYAKCPLRY 519 Query: 786 YARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE-------INHLMK 836 + + + +D GT+FH+I K+ + I ++ Sbjct: 520 LLTYQYGAEPLMIERDDDALEASDIGTIFHSIAEVFSKEVKAGSIDLGDEATIPIKERLQ 579 Query: 837 QIIDSH----FEKENLPPHIDIIWRH--LFHKISHSFLEHEEKIQSSIEKI--------- 881 I +K + H + + E + I + Sbjct: 580 AIATDVHQSYIQKHIVDEGKTPNIFHEIVLDDLLKGLFEEHHERGLLIRFLDYVYTNGKL 639 Query: 882 -FVNIP---------AKMAIESIGIHLTGFADRIDLLKSGFVD-ITDYKTGDNPKKE--- 927 + + + GF DRIDL K + + DYKTG K + Sbjct: 640 EHFEKSEQRFLLDDDFMITADKDKAIVKGFIDRIDLDKENKILTVIDYKTGKYSKDKENR 699 Query: 928 ---TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 QL L + +++ + + + ++ + + Sbjct: 700 LIEEMGSFKQFQLPLY-LLYASQAYAD----HTIDSYLLAMRDGKGTKGYAHMSTDEANG 754 Query: 985 ELSEKS-LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 L ++ + L + ++ G + + S+ + ++ + Sbjct: 755 LLFNEAYAQGLKLRIREIKAGIEEGDFRMSPSDTNCEYCPHERIC 799 >gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M] gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M] Length = 1101 Score = 115 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 114/1071 (10%), Positives = 252/1071 (23%), Gaps = 159/1071 (14%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI---- 57 +++ V P A T+ + N V T++A Sbjct: 21 DEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLL 80 Query: 58 QELRSEFIEITG-------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL 110 + +RS + G ++ P + + F LL + L P+ RLL Sbjct: 81 RRVRSRLARLAGTTVGVAVGEAAGAPTVST-----YHAFAGSLLRDHGLLLPIEPDTRLL 135 Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWE 167 L + + +L + + A + L LA+ + + + E Sbjct: 136 SETELWQLAFEVVNGYRGELC--TQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELE 193 Query: 168 DLHALKNE----KYGMWWLLAADFLK---------IASKYWTERLVELNASSPVGYQIAL 214 L + L ER+ A Sbjct: 194 RLVHALPAGPNQRDSGPNQWLLRMLATQTERAELVPLLDALHERMRAAKVMDFGMQMAAA 253 Query: 215 MRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIP 267 R + ++ +++ + + +S + +G + D Sbjct: 254 ARLAATCPQVGEELRSRYRVVLLDEYQDTGHSQRVALSALFGGGVDDGLALTAVGDPIQS 313 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 W + + S++ S + +L + +S E RS+ + Sbjct: 314 IYGWRGASATNLPRFSTDFALSDGAPAPVLELRTSWRNPPRALHLANAISAEARRRSVAV 373 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQK-------------CFSDVALIEADNEREEAISI 374 PD L + + V+ A + Sbjct: 374 HALRSRPDAPAGTVRCALLADVQAERDWIADQLQGHYQRAAADGVSPPTAAVLVRR-NAD 432 Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLEL------------TRFGINIDISAGIPLS 422 A + +L ++ L+ +L + + L Sbjct: 433 AAPIADALVARGIPVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAMRVLTGPRWRLG 492 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + +++ + + + + A L+ A + Sbjct: 493 GSDVAALWRRAVALVGGPQVGASASPGAVAAAAGPDTDTACLADAICDPGPADWYSSAGY 552 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI--TPLVTYKTN 540 I L + + + + R L + Sbjct: 553 ERIGALAAELNALRGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWAGAEHLDAFADV 612 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE----EEGKTLSSLFSKIIETGS 596 +IS + L+ + L + + + + Sbjct: 613 VADYAERAAISAGSALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARDRVQVLTVHAAK 672 Query: 597 CIKANAIEWIDIITRLIDGETVK----------PKIEKSSTLFILGTLESRLLNFDTLIL 646 ++ + + + + P + + + L Sbjct: 673 GLEWQVVAVAHLSAGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGIPVLDTSAVTNR 732 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDL--NLKTAEKYIGQAAHDFEMA----------NGT 694 L++ + + + L + AE + + H + Sbjct: 733 KQLSDTISAHREQLDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGLKPRGPSDFLCE 792 Query: 695 RHLIYTRSLRENNIPTIASRW----------------LQRLLVLGGTDFFDNLKKRGQCY 738 I RS + +W ++ + +RG Sbjct: 793 LKDIIERSAAAGDPCGTVDQWDPAPVAGERNPLLDDVVEAVWPTDPLATRRGDVERGARL 852 Query: 739 LDWTRKLDYTTKQPH--------------------YKRPKPFPPLEAQPRTYSFSEIKQL 778 + D + P + PP A P S S + +L Sbjct: 853 VAEAISADAGVEAPAGGAAVADIEGWTADVDALLAERARAVGPPTRALPNQLSVSGLVEL 912 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DP R + +L P G FH + + + + ++ Sbjct: 913 ARDPVGARQRLVHRLPTRPDPHAQL-----GNAFHTWVQQFYGAELLFDLGDLPGAADSD 967 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + + +F + I V +P +M + + Sbjct: 968 VGQV---------------EDLAPLQEAFAGSPWAAR---TPIAVEVPFEMPVGDT--VV 1007 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAG 947 G D + G + D+KTG+ P+ A + QL++ A A G Sbjct: 1008 RGRIDAVFEDPDGGATVVDWKTGEPPRGPEAMRQAAVQLAVYRMAWAALRG 1058 >gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] Length = 1113 Score = 115 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 87/890 (9%), Positives = 206/890 (23%), Gaps = 100/890 (11%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES-P 135 +++ D + L + +S LE R + D ++ + Sbjct: 246 RLRTRHD-SHQATARTLKPPAHAPLELSADPEHLEQWRFVASLVLTGGDQVRKGGGVTVD 304 Query: 136 LSLPISPANAIWLAKNLADIID------IIETEEKKWEDLHALKNEKYGMWWLLAADF-- 187 + A L + I+D + E + L ++ W L Sbjct: 305 IGFSAESDEAKRLKQRFVAILDAVRADDSLRREWVELRRLPSMDAS--AEGWQLVLHLSH 362 Query: 188 -LKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGS 238 L + + + + +A A + I++ + Sbjct: 363 LLPVLQAHLLLVFRQRSQVDHAHVALAAEMALGDEEAPTDLALRLDYQLEHILVDEFQDT 422 Query: 239 IPATARLMSTVANHPNGA--------IVLPGLDCHIPTAIWNTI--TEKSTNITSSNTTY 288 RL+ + + D + T + Sbjct: 423 SLPQFRLLERLTRGWQEHNSGAAIPRTLFIVGDGMQSIYGFRDANVELFLRARTRGISDI 482 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 P Y I + E E Sbjct: 483 PLVPLYLSRNFRSQAGIVDWVNATFSRLFPEQED------------SVKGGVVHSPAEAT 530 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNLARRVKLELT 407 VAL EA IA + E A++ R+ + V L Sbjct: 531 REKTSGAAVSVALFPKQRGAVEASFIAEQIADIQAHEPTASIAILGRTRSNLQPVIHALK 590 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 G+ PL ++ + L SL + D +A L++ P + Sbjct: 591 ARGLPFTGRDLDPLDESVVITDLMSLCRWLANPADSVAALGLLRAPFCGLRLADLQTLLE 650 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 A + + L + A + + E + L + Sbjct: 651 GVA---------RPLPLLAVLDAAPARLHAAEAARATHLRTTLSWAREKRGRLALDIWIE 701 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 ++ T + + D + + + + +G +S+ Sbjct: 702 QIWQRLAMSAVTPVDRLIEARAFFDLLREAERQGVGLDIAWLEYEVARLYAPQGAQQTSI 761 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + ++ + + + + ++ T +L + +++ Sbjct: 762 ELMTLHKAKGLEFDYVFIPRL-----------DRPSRADTRQLLSWNLHQGPEGPEVLIA 810 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + T + Q Y+G G R + + + Sbjct: 811 ADDSSENGDPTLYQYLVWLQRQRTEAEIRRLLYVGITR-------GRRRVWLSGEVESEG 863 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 G +D++T + +P P + + Sbjct: 864 QEYRM---------------PGEKSLLGMVISATDEVVDFSTGPGSTEPIEPSPAVFMRL 908 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRIN 825 ++ +N + R + GT H + + + + Sbjct: 909 KSVPRGREVDSVNAGLSNANRPEILAVNDNRVD-----RAVGTAMHRGLELVARYPELPA 963 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + T +++ ++ + ++ + L + + + Sbjct: 964 QCTAQLSTAIRYSLLQSGLVGDIEAAQQRVEWLLNQALGDATGRWILAQHEEAHCELAIV 1023 Query: 886 PAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTGDNPKKETAQKLID 934 DR + +G I DYKT + ++ + Sbjct: 1024 SGSGEFGES------VIDRTFVDRATGERWIIDYKTSGPGEGQSVESFYS 1067 Score = 38.0 bits (86), Expect = 9.0, Method: Composition-based stats. Identities = 75/730 (10%), Positives = 175/730 (23%), Gaps = 34/730 (4%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89 L + F L + T++A E+R+ + + + D E + Sbjct: 31 LTQRFMALMPRVAKLEQILALTFTRKAAAEMRARILSELDA----ARDNRPVNDDFERQS 86 Query: 90 TADLLLSYNLNPPVS-NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 + + + ++Q R I + L + L L + +A L Sbjct: 87 RQLASTALDHATSMGWSLQADGFNIRTIDSFCAYLTRHMPILSESG--GLMQTADDARPL 144 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 + + E + A Y W ++ L + L + Sbjct: 145 YEEAVRALFQSVGEPNPTGEALAALLLAYHNNWARLSEMLVELLGRRGDWAGLLGHHNNP 204 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + L+ + S GA Sbjct: 205 QAAEQAVNRAVAELVSTQLAKV---------GKQIARYSDFQELCEGAAGRLRTRHDSHQ 255 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 A T+ + + Q+ L + D R G G S Sbjct: 256 ATARTLKPPAHAPLELSADPEHLEQWRFVA---SLVLTGGDQVRKGGGVTVDIGFSAESD 312 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 ++ + + ++++ + ++ + + + E + + L L + Sbjct: 313 EAKRLKQRFVAILDAVRADD--SLRREWVELRRLPSMDASAEGWQLVLHLSHLLPVLQAH 370 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 L+ R+ + L D A L+ + L + + ++ Sbjct: 371 LLLVFRQRSQVDHAHVALAAEMALGDEEAPTDLAL----RLDYQLEHILVDEFQDTSLPQ 426 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 G+ E A + G ++ Y D + R T+ + Sbjct: 427 FRLLERLTRGWQEHNSGAAIPRTLFIVGDGMQSIYGFRDANVELFLRARTRGISDIPLVP 486 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + +VD + + L + + S ++ T+ + Sbjct: 487 L--YLSRNFRSQAGIVDWVNATFSRLFPEQEDSVKGGVVHSPAEATREKTSGAAVSVALF 544 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 ++ + + ++ + + I + + + + L Sbjct: 545 PKQRGAVEASFIAEQIADIQAHEPTASIAILGRTRSNLQPVIHALKARGLPFTGRDLDPL 604 Query: 629 -------FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 ++ D++ GL + + + A Sbjct: 605 DESVVITDLMSLCRWLANPADSVAALGLLRAPFCGLRLADLQTLLEGVARPLPLLAVLDA 664 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 A A HL T S +A + R + Sbjct: 665 APARLHAAEAARATHLRTTLSWAREKRGRLALDIWIEQIWQRLAMSAVTPVDRLIEARAF 724 Query: 742 TRKLDYTTKQ 751 L +Q Sbjct: 725 FDLLREAERQ 734 >gi|255655058|ref|ZP_05400467.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-23m63] gi|296451045|ref|ZP_06892787.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08] gi|296880602|ref|ZP_06904564.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07] gi|296260052|gb|EFH06905.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08] gi|296428556|gb|EFH14441.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07] Length = 1155 Score = 115 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 34/255 (13%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S +++ P+A + + LK + D GT HNI+ K+ + N Sbjct: 780 NSLSISRLEKYAECPFAYFIQYGLKARKRK--EYSFTPPDLGTFIHNILDRFSKELLQDN 837 Query: 828 TPE-------INHLMKQIIDSHFEK---ENLPPHIDIIWRH-LFHKISHSFLE--HEEKI 874 I + I+D K L + + + + ++ Sbjct: 838 LSWRGIDEKYIELKIGIIVDEIILKIPGYILNSSERYKYLAYRLKNMLTTAITIISQQIK 897 Query: 875 QSSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLKSGF---VDITDYKTG 921 Q S E I + K+ +E + L G DR+D + G + I DYK+G Sbjct: 898 QGSFEPIDYEVKFGDNGKYPPIKIVLENGQEVSLIGQIDRVDEFEEGENKYIRIVDYKSG 957 Query: 922 -DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + QL + A+ + + A + Y R+ I + Sbjct: 958 NKSISLTEIYYGLQLQLLVYLDAILESAKDKDININPAAILYCRINN-----PIAKFNED 1012 Query: 981 YSADELSEKSLKNLI 995 E+ E LK L Sbjct: 1013 KDDVEIQEAILKELR 1027 >gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301] gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1061 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 96/821 (11%), Positives = 203/821 (24%), Gaps = 122/821 (14%) Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL 214 + D + EE ++ + + K R + + Sbjct: 274 LRDRLRDEESLLSLRPNEADDWNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGA 333 Query: 215 MRAEAEHLMK----GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 +RA ++ + + P ++++ + + P I+ D Sbjct: 334 VRALESEAVRSHYQQRWRYCFVDEFQDTNPTQSQILQALWD-PQHLILTLVGDEKQSIYG 392 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + +L++ E + ++ + Y + Sbjct: 393 FRGAATQVFRNWQQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLDPYQPLRSDRQP 452 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384 P + E +EA +IA ++ + + Sbjct: 453 PHPLPPIQQLVIEPEEKDSLEQA-------------RIQEATAIAQQIQTWIQQPLLVWD 499 Query: 385 ----------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + L L L + GI + ++ G L T L +LL Sbjct: 500 KPSNQHRPIAYGDIAILCRRRAPLETVYGEVLNQAGIPVLVNGGGSLLETPVGYDLQALL 559 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + ++ +A+ATL++ P + Y + + + + Sbjct: 560 EFLVYPSNDLALATLLRSPAFGLSDAQLYQRAQQGKGWWSH----RQERPDPAFAAAIKI 615 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 ++ + + ++ + Q L+ + + Sbjct: 616 LEGLLRSRFFESPLRLVQQFDRATGYSAVLASLPQA-QRLLADWQALLTFLREQPQAHDL 674 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 +L + + + ++ L K + + + + + +I Sbjct: 675 ELLLRYWKQL-------------QQAEVVLPRPVLKAGNAVTLMTLHGSKGSEWPVVIIP 721 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 T KP+ + + L FDT + L + + A F Q + Sbjct: 722 DLTAKPRSQAETVL------------FDTELGVALRQPYVKEQAAAYQFFKYRKQQAEDA 769 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 +T + R L+ S A L L L Sbjct: 770 ETR-------RLLYVGFTRARDLLLLTS----PKSAEARSPLDLLAPGLEQAAIQPLDPN 818 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + T L ++ P S S P + R Sbjct: 819 SGTEIAVTATLPTADAPLFWQSTAAIAPQ---YSELSVSAFADYFRCPALFHFRYTQGHP 875 Query: 795 FI---PHFKKDPDRTDRGTLFHNIIT------ELIKKRINKNTPEINHLMKQIIDSHFEK 845 G L H + E +K ++ Q+ S F Sbjct: 876 GAIDGEGAGTSDRPPQLGLLVHRALELDLRQPEALKPYCAAEDQDLIPQALQLA-SCFAT 934 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 E + + + + + + S G+ L G AD + Sbjct: 935 EPVYSAVREQAQQR------------------------EVTLHLEL-SSGLVLKGRADLV 969 Query: 906 DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 G + D+KT P+ E QL AAAL Sbjct: 970 -----GADWVLDFKTDQQPQPEN----YQLQLWAYAAALNR 1001 >gi|284047260|ref|YP_003397600.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283951481|gb|ADB54225.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 1052 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 127/1094 (11%), Positives = 255/1094 (23%), Gaps = 163/1094 (14%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLV + S+ ++RA LR + L + ++ Sbjct: 32 RTLVARLAWLVEQGEAPESLLALALSERAADALRRHVEDTVEGPYEEL-AVMTVHGFCAR 90 Query: 88 KFTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + L V RL L I + D + + Sbjct: 91 LLREEALEGGIDPFAVAVGRADRLAMLLERIDELTIRRHDFRGNPAALVASFVRR----- 145 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNE-----KYGMWWLLAA----DFLKIASKYWT 196 ID ++ E E+ A A + Sbjct: 146 ----------IDRLKDELIGPEEYAAWAESLGADGDDASDAERARGAREREFAEVYRAHD 195 Query: 197 ERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 L E A I +R +H + +++ A L+ +A+ Sbjct: 196 RMLAEQGALDSGDLVIGALRLLRDHPHVRARVAARYRHLLVDDVQEPNFAHGLLLRLLAS 255 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + D + K+ + +T Q L + + Sbjct: 256 EHGN--LTAAGDDDQAIQRFRAAATKNLRDFQAELPDATVVQ-----LEHSFRCPQRVLD 308 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 V + R L +VA + NER +A Sbjct: 309 AANAVVAPLEDRIEKRLDGPLG-----------------------GEVAFWRSANERAQA 345 Query: 372 ISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 S+A + + + + L+ + + V + L + + Sbjct: 346 QSVAADVERLIGREGVPPERIAVLVRSIAREGQAVAVALEERAVGHRLIGEAAFFQRAEV 405 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLA---------------KFGFPEKYLSRAKNALE 472 L + L + D A+ + P + A Sbjct: 406 RDLLAWLRLLIDPADAPAVVRALARPPIELRSVDLARCTQIARRRKLDMVGALGAALESP 465 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD-----HI 527 + + L + I T + + V RL ++L + Sbjct: 466 QIPPEARDRIRMFLGLYRSAVGAIDTMRPDLFVHRLIERLGLRRQQLFTAQAEVVERLRG 525 Query: 528 LQCITPLVTYKTNKNSTCGNLSISD-----WTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L L T T + + + +G Sbjct: 526 LARFGELATAFTQRQPQATPREFARSIAAAAEAGLREEEEPPPATTRGVQVMSMHAAQGL 585 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 +F + A+ I L+ + E + + Sbjct: 586 EFDHVFVLGLHAAGLPGAHTRTLEPIAPALMKETLPEDDHEAHVAEMRRLLHVAMTRSRQ 645 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI----GQAAHDFEMANGTR--- 695 L+L +PF + + ++ H Sbjct: 646 RLVLVHPQASDRGAAQPPSPFAEEARAAVGGVWEERAEELFGPAESLHSTYRILRDELLE 705 Query: 696 ----------------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 L + ++ + ++R D + R + Sbjct: 706 TIKRTGSRIGELRFDTDLDVSHAIVRYLEVVKLAALIERSDDQSVKDALAEVNARLASAI 765 Query: 740 -----------DWTRKLDYTTKQPHYKRP----------KPFPPLEAQPRTYSFSEIKQL 778 L + + +PF P S S+I Sbjct: 766 TSEQRDILATSPLDEYLLDADRDDRTRAAAIAAREEPSLEPFLPRRGDGVMLSASDIDTY 825 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 P R+ ++ P + G L H ++ + M + Sbjct: 826 RTCPLKYKFARVFRIPQEPTLNQR-----FGILVHQVLERFHSDP--SRPSQSLDEMLGL 878 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 ++ + + I + E + + + + L Sbjct: 879 LEFGWRRGGFGGTEQEIQL-RGKATAALTRYFERFQEEPSQPVAFERSFSFRL--GPHLL 935 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G DR+D L G ++ DYKTG + ++ D QLSL A A + + A Sbjct: 936 RGRVDRVDKLPEGGFELIDYKTGPPKSRAQLEQ--DVQLSLYAVAAREAW-----QFESA 988 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 Y + K+ + + +E++ + + ++ Q F S + Sbjct: 989 RGAYYYVLDDAKVPVERCAEDRDWIEEIAMEVAEGILS---------QGF--EPTPSYAA 1037 Query: 1019 NIQSEYDHLARVAE 1032 +Y + AE Sbjct: 1038 CAICDYRLVCPAAE 1051 >gi|168751036|ref|ZP_02776058.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4113] gi|168758205|ref|ZP_02783212.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4401] gi|168766793|ref|ZP_02791800.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4486] gi|168777657|ref|ZP_02802664.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4196] gi|168778814|ref|ZP_02803821.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4076] gi|168788084|ref|ZP_02813091.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC869] gi|168801684|ref|ZP_02826691.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC508] gi|195936423|ref|ZP_03081805.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. EC4024] gi|208808591|ref|ZP_03250928.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4206] gi|208811999|ref|ZP_03253328.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4045] gi|208821866|ref|ZP_03262186.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4042] gi|209396729|ref|YP_002272285.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4115] gi|254794760|ref|YP_003079597.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. TW14359] gi|261226120|ref|ZP_05940401.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7 str. FRIK2000] gi|261256624|ref|ZP_05949157.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7 str. FRIK966] gi|187767154|gb|EDU30998.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4196] gi|188014855|gb|EDU52977.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4113] gi|189003520|gb|EDU72506.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4076] gi|189354929|gb|EDU73348.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4401] gi|189363853|gb|EDU82272.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4486] gi|189372116|gb|EDU90532.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC869] gi|189376197|gb|EDU94613.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC508] gi|208728392|gb|EDZ77993.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4206] gi|208733276|gb|EDZ81963.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4045] gi|208741989|gb|EDZ89671.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4042] gi|209158129|gb|ACI35562.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli O157:H7 str. EC4115] gi|209761098|gb|ACI78861.1| DNA helicase RecC [Escherichia coli] gi|209761102|gb|ACI78863.1| DNA helicase RecC [Escherichia coli] gi|209761106|gb|ACI78865.1| DNA helicase RecC [Escherichia coli] gi|254594160|gb|ACT73521.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O157:H7 str. TW14359] gi|320640469|gb|EFX10008.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. G5101] gi|320645715|gb|EFX14700.1| exonuclease V subunit gamma [Escherichia coli O157:H- str. 493-89] gi|320651015|gb|EFX19455.1| exonuclease V subunit gamma [Escherichia coli O157:H- str. H 2687] gi|326343010|gb|EGD66778.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. 1125] Length = 1122 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + + ++ ++ + D + + +D E + + Sbjct: 596 NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] Length = 1189 Score = 114 bits (285), Expect = 8e-23, Method: Composition-based stats. Identities = 95/927 (10%), Positives = 220/927 (23%), Gaps = 100/927 (10%) Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G + + L ++ R + ++L + + + Sbjct: 262 GAALVDYIGLASRLGGTKPTAIAEGFRTVRAIGDPAARYDRLLETFLNGGGKPKADSAFL 321 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 A A +L +I+ + + L + A + ++ + Sbjct: 322 NAAMRREAPHLESLIEEARSHLL--ACVDRLSIVRMYEATRAALVLAERLNRDYESLKKA 379 Query: 202 LNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVAN-- 251 + A + + I++ + + PA ++ ++A Sbjct: 380 RSQLDFEDLINRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTIIQSLAADF 439 Query: 252 ------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------PQYS 295 + + D + + + + T Q S Sbjct: 440 FAGDTARADDRTIFAVGDEKQSIYSFQGARPERFSRERTLTERRVRAGNKRFSPIRLQLS 499 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL--PPDTSDMRNTDILENKIPNIQ 353 +D L +GN ++ S P D+ E + Sbjct: 500 FRSTVDVLSAVDTVFANIGNARGLSARDEAIVHASNRIGQPGAVDLWEVIAPEPAASDED 559 Query: 354 KCFSDVALIEADNEREEAISIAIAL--------------RMSLDENKKKSALITADRNLA 399 A E A IA L R ++ + D + Sbjct: 560 WTAPFDATPERAPVNILARRIAAVLEDWIGKETVIEKGVRRAMRPGDVIVLVRKRDAFVN 619 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 ++ R I + + + L++ + L +L + D +++A L K PL Sbjct: 620 ALMRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLPEDDLSLAALFKSPLVNLCE 679 Query: 460 PEKYLSRAKN----ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 + + A+ +L + + L +T + +R+ Sbjct: 680 DDVFELAARRNEGESLWHRLQQAGVEETSRYNATVRKLAAFSTLSRELSPHDFYARILGA 739 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 L + L + T + + ++ Sbjct: 740 HGGRRAFLARLGSEVSDILDEFLTFALD-----HERSGLPGLQAFISTLEIEAPTVKREQ 794 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 E + + ++ + + + + + K + TL Sbjct: 795 DKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEKPQADQTL------- 847 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 L VW + L L + E+ + Sbjct: 848 -------------LTVPVWRAPGSAPNSLIADDNERLKMLAEEE---YRRLLYVGMTRAA 891 Query: 696 HLIYTRSLRENNIPTIASRWLQR---LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + R + + L G + G+ + + + + Sbjct: 892 DRLIVCGYRGQRQNVDTWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGLAWRETHVPRDL 951 Query: 753 HYKRPK---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP-------HFKKD 802 P PR + + + +D Sbjct: 952 PAADGASGEPEQAKAGLPRALFTAPPPPRRLPRPLAPSGTAIAIDEPDGSSIVGSALFTG 1011 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 + L I+ L++ + + E ++ + + P + + Sbjct: 1012 KNAPKFSMLRGAILHRLLQVLPSIDAVERTAAAERYLARSVPR---WPEAERLALA---A 1065 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 L H E E + + + ++G DR+ + V I DYKT Sbjct: 1066 TVMDVLGHAELQPLFGEHSRAEVSVMGTLKLGPREFAVSGRIDRLAVSGD-TVTIADYKT 1124 Query: 921 GD--NPKKETAQKLIDPQLSLEAAALK 945 E + QL++ LK Sbjct: 1125 NREIPASAEDIAPVYRNQLAIYRELLK 1151 >gi|331674307|ref|ZP_08375067.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA280] gi|331068401|gb|EGI39796.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA280] Length = 1122 Score = 114 bits (285), Expect = 8e-23, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLEMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|323966803|gb|EGB62234.1| exodeoxyribonuclease V [Escherichia coli M863] gi|327251569|gb|EGE63255.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli STEC_7v] Length = 1122 Score = 114 bits (285), Expect = 9e-23, Method: Composition-based stats. Identities = 114/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + + + L A +T + Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEIGHLVEGLGEAQAWQAPLWKALVEYTHQ 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + S + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L E++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSELIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 1138 Score = 114 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 89/800 (11%), Positives = 202/800 (25%), Gaps = 112/800 (14%) Query: 177 YGMWWLLAA---DFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKG 225 W + + ++IA+ + T +A RA + Sbjct: 346 QDDEWEVIESLTELMRIATAHLTIEFKRQGVVDFTEISMAADRALGNIDAPSELALKLDY 405 Query: 226 TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTI-------- 274 I++ + +L+ + +G + D + Sbjct: 406 GISHILVDEFQDTSYGQYQLIEKLTAGWQADDGRTLFVVGDPMQSIYRFREANVGLFIQA 465 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + T S ++++++ ++ + + + + Sbjct: 466 RDHGIGDIRLEFLQLTSNFRSSETVVNWVNKSFANIFPSYDDAVLGAVSLAEATATKDSS 525 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL-DENKKKSALIT 393 D + + + + I D +EA IA + + L ++ ++ A++ Sbjct: 526 DEDKVDFKIFFGDDSNSPGSDYDSEETI-TDAATQEANYIAEQIEVLLKEQPEQDIAVLV 584 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 RN + L + I L+ + +LL + +D +A L+K P Sbjct: 585 RARNHGVAIIEALQQRAIAYVAEEFEELAEKQSVLDVLTLLRVLIHPHDKVAWMALLKSP 644 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + L + E R + + L + + Q WQ Sbjct: 645 WFGLTLTDMSLIESVFGDE--VYRVLTDYPAVDGLSLQAVSALEKQGAILEKHRWQLYQQ 702 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 +L L + L + + Sbjct: 703 PLAIQLEALWL-------------------------------HLGGALSCQPGEIEQVYT 731 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 L F + + + ++ + P E + I+ Sbjct: 732 FLDFVSGYEQNQIITD---------------YNPLLLA-MSKLHAPPSREDHCRVSIMTM 775 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPF--LSRVMQSDLNLKTAEKYIGQA------- 684 +S+ L FDT+ L LN+G + + S L +G++ Sbjct: 776 HKSKGLEFDTVFLPQLNKGSGNNDKQLMVWEEFPAQDDSSQYLMAPVDQVGESNSLYKFV 835 Query: 685 -------------AHDFEMANGT-RHLIYTRSLRENNIPTIA-----SRWLQRLLVLGGT 725 + + R L T + S L+ L Sbjct: 836 NDFSRQKNRLESGRLLYVASTRAKRRLFLTCCGAVSYNQKEERLKVGSFGHDSLMNLLRP 895 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + ++ + + + + + SF IK L+ + Sbjct: 896 IYETFIESEVLRLELNEEADHSSEQILDHSWQRLKADWSYPKLSDSFKGIKSLLEKNSII 955 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + ++ D+ G L H + + K N I + + Sbjct: 956 AEQATIEFDWATDV-----AKTIGVLMHRQLELISKGLWQLNQQSIRDYAAAMYEQLLSS 1010 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + + + L + + + + ++ Sbjct: 1011 GYNEKNAR-YAQQRIEQGLTNVLNDPKAQWILSAQHQDSACELALTGVVDGEYKAF--VI 1067 Query: 903 DRIDLLKSGFVDITDYKTGD 922 DR + + G I DYKTG Sbjct: 1068 DRTFVDEEGTRWIVDYKTGS 1087 >gi|302553994|ref|ZP_07306336.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471612|gb|EFL34705.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 512 Score = 114 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 54/426 (12%), Positives = 112/426 (26%), Gaps = 37/426 (8%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P + ++ ++ +P V + ++RA ELR + TG + Sbjct: 73 PGTGKTTTLVESVTERI------ARGGDPE---RVLVLTFSRRAAVELRDRMAQRTG--A 121 Query: 73 TILPIIKSLGDVVEEKFTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 P + A D L +S ++ + + L+ + L Sbjct: 122 ARAPQATTFHSFCYALVRAHQDSDLFVEPMRLLSGPEQDVSVRELLAGQVDLER---LGL 178 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 + A + ++ + L W AA FL Sbjct: 179 ANVRWPDELRACLTTRGFADEVRAVLARTRELGLGPDALDDFARRTGRPDWRAAAAFLAE 238 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + V A + R EA + + + + PA RL+ +A Sbjct: 239 YLDVLDLQGVLDYAELVHRAVLLARRPEAAAWLAARYDAVYVDEYQDTDPAQVRLLHALA 298 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G ++ D + + + L + Sbjct: 299 G--GGRTLVAFGDPDQSIYTFRGADVNGILDFPHAFPRADGRPAPVKVLRTSRRSGAALL 356 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 ++ M + + + ++ + V E Sbjct: 357 AATRLLTQRMP--------------LTRLPAEKVRAHRELAPVRDGGRVEAYTYPTSGTE 402 Query: 371 AISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTL 425 +IA LR + E+ + + L+ A V+ LT G+ +++ PL Sbjct: 403 LDNIADILRRAHLEDGVPWSEMAVLVRAGSRTIPTVRRALTAAGVPVEVDGDDVPLRHEP 462 Query: 426 HSSILT 431 + L Sbjct: 463 AVAPLL 468 >gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit [Bradyrhizobium sp. ORS278] gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit [Bradyrhizobium sp. ORS278] Length = 1156 Score = 114 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 89/812 (10%), Positives = 198/812 (24%), Gaps = 76/812 (9%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 ++ ++ L + L S W ++ Sbjct: 357 AANYRREKDERGLLDYDDLID---KTLVMLNRVSAGWVHYKLDRGVDH--VLIDEAQDTS 411 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-TEK 277 G+ R + V + G D H A + Sbjct: 412 PRQWDIVAHIIEEFTSGAGARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRF 471 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPD 335 + + T+ S +L +D + + + + Y ++ + Sbjct: 472 TDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDAGPSLV 531 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEAD---NEREEAISIAIALR----------MSL 382 +I + F V++ + + R +A I +R Sbjct: 532 ELWSLCERDDRKEIEGWRAPFDGVSVTSPEVKLSRRIQAE-IKRLIRVGTMTGHDGARRR 590 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 L+ V L GI + + + L+ + L +L +A+ D Sbjct: 591 LSYGDMLILVRRRGTAFDAVIQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQD 650 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQK 500 +A+AT +K PL + + + L + + + + Sbjct: 651 DLALATALKSPLFGLDDDDLFKLAWQRRGSLREALSAHAADDPRLQAVVRRLQQCERRAA 710 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 +T + + L D +L + L + S S Sbjct: 711 EDT-PFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERKAPAS--------- 760 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + W + + + + + ++ + T P Sbjct: 761 ---------LQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLVDTTSSP 811 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 L + + + ++ G + + + E Sbjct: 812 ADS-----QRLRLIHVPHGDREIVVWAGRKADD-----------PQAVVAARAAMLKETE 855 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF-----FDNLKKRG 735 + + N+ + L+ G + Sbjct: 856 DEYRRLLYVAMTRAADRLVIGGCMPGNMNNVRGGSWYDLMARGLDAAGLQVEVIETEDGP 915 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + T K + + L A RT + + + + + Sbjct: 916 VKRYARPEDIAETAKDEARQMAESAVELPAWLRTAAVEAPGDVAVLRPSDPSSDERPVRT 975 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 RGTL H ++ L + + + E E ++ Sbjct: 976 GESLAARSLAMQRGTLVHRLLQSLPDVPPERRRDAALRYLLRNAPDWPEDERDKLTARVL 1035 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-TGFADRIDLLKSGFVD 914 + + F + + V+I ++A L +G DR+ + ++ V Sbjct: 1036 TVIADPRFAAVF--------APGSRAEVSIVGRLAHPGQPRTLVSGQIDRLVVTEA-EVL 1086 Query: 915 ITDYKTGDNPKK--ETAQKLIDPQLSLEAAAL 944 I D+KT P + QL+L A L Sbjct: 1087 IVDFKTNQQPPSELADVPEAYLRQLALYRAVL 1118 >gi|320667105|gb|EFX34068.1| exonuclease V subunit gamma [Escherichia coli O157:H7 str. LSU-61] Length = 1122 Score = 114 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLEFATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + + ++ ++ + D + + +D E + + Sbjct: 596 NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp. BTAi1] gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp. BTAi1] Length = 1156 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 95/810 (11%), Positives = 201/810 (24%), Gaps = 72/810 (8%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 ++ E+ L + L S W ++ Sbjct: 357 AANYRREKEERGLLDYDDLID---KTLVMLNRVSAGWVHYKLDRGVDH--VLIDEAQDTS 411 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI-TEK 277 G+ R + V + G D H A + Sbjct: 412 PRQWDIVAHIIEEFTAGAGAREGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRF 471 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--LGNVSNEMYGRSMVISKSFLPPD 335 + + T+ S +L +D + + + + Y ++ + Sbjct: 472 TDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPVHNSLTDAGPSLV 531 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALI--EADNEREEAISIAIALR----------MSLD 383 +I + F V++ E R I +R Sbjct: 532 ELWSLCERDDRKEIEGWRAPFDGVSVTSPEVKLARRIQAEIKRLIRAGTMTGHDGARRRL 591 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 L+ V L GI + + + L+ + L +L +A+ D Sbjct: 592 SYGDMLILVRRRGTAFDAVIQALKHAGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDD 651 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 +A+A +K PL + + + L+ + + A Sbjct: 652 LALAIALKSPLFGLDDDDLFKLAWQRR---------------GSLRDALTAQAADDPRLQ 696 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 V + E L + N ++ ++ +L ++ + Sbjct: 697 AVLRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + W + + + + + ++ + T P Sbjct: 757 APASLQGFVA--WLRAADTEVKRDMEISRDEIRVMTVHGAKGLEASVVFLVDTTSSPADS 814 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + L S + G ++ P TA+ L E Sbjct: 815 QRLRLI----HVSHGDQEIVVWAGRKSDDPQPVATARAAML------------KETEDEY 858 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF---FDNLKKRGQCYLD 740 + + N+ I L+ G + ++ Sbjct: 859 RRLLYVAMTRAADRLVIGGCMPGNMTNIRGGSWYDLMARGLDAAGLQVEVIETEDGPIKR 918 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF---SEIKQLINDPYAVYARRILKLDFIP 797 + R D R P+E + + + + P A + Sbjct: 919 YARAEDIAETAKDEARRMVEMPVELPAWLRTVAAETPGEVAVLRPSDPSADER-PVRSGE 977 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 RGTL H ++ L + + + + E++ ++ Sbjct: 978 SLAARSLAMQRGTLVHRLLQSLPEVLPERRRDAALRYLLRNAADWPEEQRTGLAERVLAV 1037 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL-TGFADRIDLLKSGFVDIT 916 + + F + + V+I ++A+ L +G DR+ + S V I Sbjct: 1038 IQDPRFAAVF--------APGSRAEVSIVGRLALPGQPRALVSGQIDRLVVTGS-EVLIV 1088 Query: 917 DYKTGDNPKK--ETAQKLIDPQLSLEAAAL 944 D+KT P QL+L A L Sbjct: 1089 DFKTNQQPPSDLAEVPPAYVRQLALYRAVL 1118 >gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] Length = 1232 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 123/1038 (11%), Positives = 277/1038 (26%), Gaps = 154/1038 (14%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 T VE + P L+ V R+ QEL + ++ + P Sbjct: 209 AQTKVEELPFYPYIKEDLSLVL------RSCQELLERALSLSKEPGGPAPRA-------- 254 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL--------PDIIKDLYPESPLSL 138 E F DL L + ++L EL + R K + K + Sbjct: 255 ENFIDDLEQVNELIRHQDDFEKLYELLPNVNFKRLKTCKGDEYDPALLEKSTDARNQAKK 314 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIASKY 194 + + ++ A + + + E L L + + + Y Sbjct: 315 QLEKLKDEYFMRSPAQHLKSLAEMKPVVETLVELVIQFGERFERAKQEKSIVDFSDLEHY 374 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 L E +A L+ EA + +++ + ++ V+ + Sbjct: 375 CLRILAEQDAEG------HLIETEAAKYYQQQFEEVLVDEYQDTNLVQETILKLVSKGKH 428 Query: 255 GAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 A + D + H Q + +D+ + R Sbjct: 429 SAEGNLFMVGDVKQSIYRFRLAEPMLFLNKYK------HFQPDGKETGKRIDLNKNFRSR 482 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------- 365 + + + ++ ++ D + L P + +++ L+ D Sbjct: 483 SDVLDSTNFLFKQLMGETV-GEIEYDEQAELKLGASYPESKDTTTEMLLVHLDQQEAETG 541 Query: 366 -------NEREEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVK 403 + EA IA ++ +++ + ++ A ++ Sbjct: 542 EEREELETVQFEARIIAKKIKELVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMM 601 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 EL + GI + + S++ SLL I + +A +++ P+ E Sbjct: 602 EELKKQGIPVYANLSSGYFEATEVSVILSLLKVIDNPYQDIPLAAVLRSPIVHLDENELA 661 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L R + + W+ + Sbjct: 662 LIRTSDKKGTYYDAVKAFMSVTHSDHPTCKKLERFF---QLLRKWRDFSINHSVAELIWE 718 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 V Q + + K ++ D K R + + + Sbjct: 719 VYRDTQYLDYVGGMPGGKQRQANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLG 778 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--------------------------- 616 + FS+ + + ++ + ++ G Sbjct: 779 AAKTFSETEDVVRMMTIHSSKGLEFPVVFTAGLGRNFNMMDLNQSYLLDKELGFGSKYIH 838 Query: 617 -TVKPKIEKSSTLFILGTLESRLL----NFDTLILGGLNEGVW------PKNTAKNPFLS 665 ++ + + + + LL + L E ++ + A + + + Sbjct: 839 PELRISYATLPLVAMKKKMRTELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQN 898 Query: 666 RVMQSDLNLKTAEKYIGQAAHDF-------EMANGT-----RHLIYTRSLRENNIPTIAS 713 + L E+Y + DF A + ++ + T AS Sbjct: 899 AATGEEWLLPDFERYQSKTYLDFIGPALIRHQAMSSVLEETGDIVLSHPSTFTISFTQAS 958 Query: 714 RWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 L+ + L D G + + ++ +K P ++ S Sbjct: 959 DLLKEDMSLEKKEQDEIVQALIDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVS 1018 Query: 772 FSEIKQLINDPYAVY-----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + + I D Y+V AR L KK ++GT H ++ + Sbjct: 1019 EIKRMKEIQDEYSVPSSIRKARATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEP 1078 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + I I + I+ F + + + + Sbjct: 1079 YDESRIGHLLESLQQ--RDLLTDEQIQSINQ---EGIAAFFSTSIGQKLLKADWVKREVS 1133 Query: 887 AKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL--- 932 + + + + G D + G + + DYKT + T Sbjct: 1134 FSLVLPVKEVYSHIDTEGEPVLIQGMIDCLFET-DGKLYLLDYKTDRVQGRYTVDAAEPI 1192 Query: 933 ----IDPQLSLEAAALKA 946 + Q++L A A++ Sbjct: 1193 LKKRYETQIALYAKAVER 1210 >gi|309785132|ref|ZP_07679763.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1617] gi|308926252|gb|EFP71728.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1617] Length = 1111 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1081 (10%), Positives = 258/1081 (23%), Gaps = 159/1081 (14%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + AL+ + DP P I V + Q L+ + G + I L Sbjct: 2 LEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---FPL 53 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +L + +L L+ ++ + L+ Sbjct: 54 PASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDDSD 109 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWTER 198 L+ AD+ D W L + L A +T Sbjct: 110 KRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYTHE 167 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 168 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 226 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 227 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 286 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 287 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 346 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + S + + + E + L L+E+ + ++ AD + Sbjct: 347 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 406 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 407 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 466 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 467 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 526 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 527 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 586 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 587 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 644 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 645 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 701 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 702 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 761 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 762 EARVKAHLTFLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 821 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 822 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 881 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 882 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 929 Query: 887 AKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 ++ + G+ +TG+ + + G P + + QL LE Sbjct: 930 MEIDLACNGVQVTGWL--LQVQPDGLLRWR---------PSLLSVAQG--MQLWLEHLVY 976 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 A + D + +E++L L +++ + G Sbjct: 977 CASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG 1019 Query: 1005 E 1005 Sbjct: 1020 M 1020 >gi|283786522|ref|YP_003366387.1| exodeoxyribonuclease V gamma subunit [Citrobacter rodentium ICC168] gi|282949976|emb|CBG89604.1| exodeoxyribonuclease V gamma subunit [Citrobacter rodentium ICC168] Length = 1123 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 122/1086 (11%), Positives = 277/1086 (25%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANI--EFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + F L P S + +L+ + L L L+ Sbjct: 64 LPASFIWDMFVRVLPGI----PKESAFNKQSMSWKLMTLLPELLGHDDFTLL-RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D +W + L A +T+R Sbjct: 119 TDKRKLFQLSSRAADLFDQYLVFRPEWLTQWEAGRRVEGLGEAQRWQAPLWKALVEYTDR 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H + Sbjct: 179 LGQPRW-HRASLYQRFIQTLENANTCPPGLPSRVFICGISALPPVYLQALQALGKHIDIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLARQRRHSFEDRHLPLFRDGASAGSLFNSDGEQDVGN 297 Query: 299 --LLDFLDIKREDVKRLGN--------------VSNEMYGRSMVISKSFLPPDTSDMRNT 342 L + + R+ + L N ++ I + Sbjct: 298 PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQADILELENHAVAGVSLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + V + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDSKRRLDPDDTSVTFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPPERHLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + F L + G + D +++ L L + + Sbjct: 478 VLAARFNISEEGLRYLRLWVNES-GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYA 536 Query: 514 EEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 E E + L+ + + + L+ + +++W + L Sbjct: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLSQERPLAEWLPVCREMLN 596 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L + + + ++ ++ + D + + +D E + + Sbjct: 597 DFFLPDSETVAA--MTLIEQQWQAIVAEGLGAEYGDAVPLSLLRDELAQRLDQERISQRF 654 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + I + R + F + L G+N+GV+P+ F ++ ++ Sbjct: 655 LAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQMPPLGFDLMSLKPMRGDRSRRDDDR 713 Query: 683 QAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF----------- 728 E + L + R +N S +Q LL G + Sbjct: 714 Y--LFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELLDYIGQSHYLPGDEALTCDE 771 Query: 729 -------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRT 769 + + +L R+ + P R P P T Sbjct: 772 SEERVKAHVTCIHTRMPFDSENFLPGERQSYASEWLPAASRSGEAHSDFVQPLAFEMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 S +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LSLETLQRFWAHPVRAFFQMRLRVNFRSEESEIPDTEPFTLEGLTRYQLNQQLLNALVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 E + D I H+ + + + Sbjct: 892 GDAERLFRRFRAAGD------LPYGAFGEILWETQHQEMQTLADKIIACRQPS------Q 939 Query: 886 PAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLE 940 ++ + G+ LTG + G P + + QL LE Sbjct: 940 SMEIDLHCHGVQLTGWLPQV-----QEDGLLRWR---------PSLISVSQG--LQLWLE 983 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVT 999 +L Y + ++ L + ++L L +++ Sbjct: 984 ------------------HLVYCACGGTGESRLFLRKDGEWRFPPLEAAQALDYLAQLID 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|206890547|ref|YP_002248959.1| hypothetical protein THEYE_A1135 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742485|gb|ACI21542.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 923 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 96/713 (13%), Positives = 212/713 (29%), Gaps = 81/713 (11%) Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELT-RFGINID 414 F + L + E + + + ++K ++ L ++ +T + + Sbjct: 242 FDKINLYSCPDTHAEVKVVGHLI-ENFPIDEKTVIVLPKSDTLFPLLRQGITFLKDEDYN 300 Query: 415 ISAGIPLSTTLHSSILTSLLNAIF----KLNDFMAIATLVKHPLAKFGFPEKYL-SRAKN 469 IS G PLS T +L A+ A V HP K + Sbjct: 301 ISMGYPLSRTPIYGFFNNLFEAVNSMENNQIYVPAYFKFVLHPYTKNVLVKNSAELSRII 360 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 ++ L ++ ++L+ L + N + +E +L Sbjct: 361 FHQIEDLFRSEEIPPFVELEWLEKEVPEIISANLKDFNLTVDDIKEHIKLIHNNTIKKFI 420 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 I + + N + T + + + T+ S Sbjct: 421 IIRNIEEFINNCKDVLLF-----IYEKTTARFHYLFYPYVEFFIAQFEKIANSTIKSFQF 475 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + IE+ + + L+ E V L ILG LE+R + F +I L Sbjct: 476 EHIES----------YFNFFKNLVIFENVPFHGTPLKGLQILGFLETRNIKFKKVIFLDL 525 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-TRHLIYTRSLRENNI 708 NEGV+ + +++ L ++ ++L + + F + + + Sbjct: 526 NEGVF-PDLSEDYLLPYSVRKIIDLPVYQDREKLIYYYFSLLVNNAEEVHLCYIKND--- 581 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 SR++++++ + L + + + + + Sbjct: 582 KNERSRFIEKIIWEIEKSVSEKLNIPIKSISWSVNL--AAKRPSEIYKTEQIMTIINSLC 639 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S I ++ Y ILKL + + +D G + H + + K R K Sbjct: 640 -LSPSAIDVYLDCGLKFYYFYILKLIKKKDISTEIEHSDIGIIVHESLKQYFKLRKGKKL 698 Query: 829 P--EINHLMKQIIDSHFEKENLP------PHIDIIWRHLFHKISHSFLEHEEKIQ----- 875 + + ++ I++ F K+ I ++ + + ++ Q Sbjct: 699 HPGDFGNDIELIVNDIFLKKYGSKITGNLYLIKFQILQRLSELIEYYRKMAKEHQLKILE 758 Query: 876 --SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--SGFVDITDYKTGDNP------- 924 IE+ + K RIDL++ + I DYKT N Sbjct: 759 VEELIEESLFDTSFKY--------------RIDLVENIDSSIIIVDYKTSGNENNYKIKF 804 Query: 925 -----KKETAQKLI--DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 + Q+ + I+ + +++ L + D Sbjct: 805 DKLDISDRQSWSKYIGSLQIPIYMLLYSRK--YSINPLNLKGHYFL-LGKSLINDEKVRF 861 Query: 978 KK--KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + +E + L ++ +++ PF + ++ + Sbjct: 862 DPFTQIDQEEGIKIVSIILQTLLNEIKDKNTPFEPTSD-FKNKCKFCDFQPIC 913 Score = 66.9 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 21/208 (10%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 + P KR L+ + S I P+I S + V F Sbjct: 39 LVVFPGKRPSYYLKKALAQRLNH-SFIPPLIFSADEFVNFLF------------------ 79 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + + A I L + + N I L ++ + + E Sbjct: 80 KKISNACFIEAVEAVGIIYEICLRHDLLTTFFRKFDNFISFGFKLFNLFEELYIEGISIH 139 Query: 168 DLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 L ++ FL I + + + L++ N + L ++ + Sbjct: 140 QLKEVETLIDIPAKSQEKLRFLSIVYEDFYKELIDRNLCTRALRYRKLADSD-DLESYLK 198 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPN 254 +I AG + +++ +A N Sbjct: 199 FNNLIYAGFFAFTASEKKILQKLATLKN 226 >gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] Length = 1125 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 92/846 (10%), Positives = 222/846 (26%), Gaps = 110/846 (13%) Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L + D++ +E L A + A FL+I + ++ L+ Sbjct: 302 LFDLMPQVDDLMRRVEDARDARLALRAAQKTHVLH--QFAHRFLEIYAHE-KQKRGWLDF 358 Query: 205 SSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250 + AL+ A + + G I++ + + P ++ +A Sbjct: 359 DDLILKARALLTNPAVAAWVLYRIDGGIDHILVDEAQDTSPRQWDVIERLADEFYSGDGA 418 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKRE 308 + D + + + S Q + L++ Sbjct: 419 REEEDRTLFVVGDKKQSIYSFQGADPREFDHKQDLFEQKISQAGQIFQRRSLEYSFRSSS 478 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNIQKCFSDVALIE 363 + L + + + + + + S + + + P+ ++ V Sbjct: 479 AILHLVDTTLAPHTDAGFQADAAHKAFKSALPGRVDLWPVVEKTDEPDDREWSDPVDQKS 538 Query: 364 ADNERE-EAISIAIALRMSLD--------------------ENKKKSALITADRNLARRV 402 A + A +A ++ ++ L+ +L + Sbjct: 539 AHHHTVVLADQVASQIKELIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSDLFSEI 598 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 G+ I + + + L L +LL+ + D +++AT +K PL + Sbjct: 599 IRACKTAGVPIAGADRLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQML 658 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + + S D +L + Q + R+ L Sbjct: 659 FTLSHYRKEDHLWQALR--SSDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKL 716 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + + + S +W + + Sbjct: 717 LARLGSEAEDGINAMLSQALSYER------------------GAIPSLTGFLVWMQTDDL 758 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + + + ++ ++ +P + + + I T +L D Sbjct: 759 EIKRQIDNASDQVRVMTVHGAKGLEAPIVILPDTGKRPLVIRDEIIKIGDTPVWKLSEGD 818 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + M+ L+ + A + + + + + Sbjct: 819 ---------------------MPAAMRGALDDRKAREMAERLRLLYVAMTRAEKWLIVAA 857 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 +P + W Q + G + G + K Sbjct: 858 A--GELPKDGNSWYQMVGAAMGQAGAKPVGSSGGMRFEHGDWDALPVIDSAPKTHTTPEL 915 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + ++ P + + L + + G L H ++ L Sbjct: 916 DPVFNTALTVIPLRAKTLAPSDLGGAKAL---PGDDGQSEDAAKSYGNLVHKMLETLPMM 972 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 ++ + H + Q D + L I ++ + + Sbjct: 973 HSDRWNG-VLHTLAQGYDETVAQAALREAIAVLDTPELAHV-------------FGKDAL 1018 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940 +P + L G DR+ L+ V + DYKT + + + Q+ Sbjct: 1019 AEVPITAPLGPK--RLHGTIDRL-LVSDTDVLLVDYKTNRVVPDTPDRCPEGLLRQMGAY 1075 Query: 941 AAALKA 946 AAAL Sbjct: 1076 AAALAQ 1081 >gi|306812274|ref|ZP_07446472.1| exonuclease V subunit gamma [Escherichia coli NC101] gi|305854312|gb|EFM54750.1| exonuclease V subunit gamma [Escherichia coli NC101] Length = 1122 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773 + + L ++ + + F+ Sbjct: 771 ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 774 -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|239990573|ref|ZP_04711237.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length = 287 Score = 114 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 74/262 (28%), Gaps = 19/262 (7%) Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 R Q + S S + QL N + R + G Sbjct: 6 EEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGR-----EVKADAPATAAQGFGN 60 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 + H ++ + + ++ + + + + FL Sbjct: 61 VVH-VLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLHW 117 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKE 927 + + +E+ + + G DR++ G + D+KTG P K+ Sbjct: 118 HVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKD 177 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSAD 984 PQL++ A++ G+ ++ + ++L+Q + K A Sbjct: 178 EVAAH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQ 235 Query: 985 ELSEKSL--KNLIEIVTLLQNG 1004 E L + + Sbjct: 236 EPLAGEWVSDLLATAAKKVLDE 257 >gi|325182777|emb|CCA17232.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 977 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 105/946 (11%), Positives = 236/946 (24%), Gaps = 119/946 (12%) Query: 105 NIQRLLELAR-LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + + L + L + L S P + ++ + +L +++ Sbjct: 116 GLDKRLVDSNTLYALLMQNLERFPMKRLHSGLTSSPFTLKREVYDSLSLFQMLESA---G 172 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEA 219 E+ A E K + + L N SS + L Sbjct: 173 IFPEEYQAYAEESCHKSEQEHHLEYAEGYKLYRQILESKNLSSWSGIILDGLSLLRSQNN 232 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I+I PA+ ++++ + PN Sbjct: 233 VSSFLSGYSDIVIDELEEMNPASIKILAALIQQPN-----------------------IQ 269 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + H ++ LLD L E + RS + Sbjct: 270 STMAFCHGSLDH-RHRNDLLLDRLVANSEVFINQHILE--KNVRSEFSRCI---ASETAC 323 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-KKKSALITADRNL 398 + + + + +E D+ EE + +A +++ L + + Sbjct: 324 LLSKKISKSGHKPLEKLENFKCLEFDSIGEEELYVAQSIKHKLTFCEPADIVVACSTIAD 383 Query: 399 ARRVKLELTRFGINIDISAGIP-----LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 R++L + I S L S + S+L + +D ++ +++ Sbjct: 384 IARIELICEDMSLPIIRSTLRSDKNGYLLHQPGVSQVFSMLQVLAAPSDTHSLYDVLRSN 443 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + +L I ++ + + Sbjct: 444 SFDVSPELFSQLLTNAHKMHKS----------------LLTVIREHVSDPETGNLTT--- 484 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 +++ + L T + + + + V Sbjct: 485 ----------AQPLVKLVRMLDTLQPLSHQEPTTKVVHQIVRELGLYEALVTPTCPEDEE 534 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 + L +E + + ++ + L Sbjct: 535 MAFTFANFLRAIELAENCVE-SPFLSFVVPYLRHLGETRQSDIDGSETNDQYLRVLHLPK 593 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF----E 689 L L +++ +P + + + + + + Sbjct: 594 ASVSELQSKHLYFVAMSDRKYPGRIRRLGIAPPADLLEDVMHSQTRSKFLEERQYTMYNA 653 Query: 690 MANGTRHLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 + + + + +N P SR L+ + + + Sbjct: 654 LCMAADSITISFAQNVSNSPEREKPSRILEPIWPSSSSQLPTKPPANSDP-----ETFET 708 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 TT Q SFS+I + P+ + R+LKL D Sbjct: 709 TTPPKPL-----DFKPSYQLDHLSFSQIAEYQRCPHRYFLHRVLKLS-----TDDNPALI 758 Query: 808 RGTLFHNIITELIKKRIN-------KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 G H I + + S E + Sbjct: 759 YGRALHESIAAFANHLRENPSTTDSARKEAEQSAVAALTRSWVEGSFASATQATLLLQQA 818 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + F+ H + E + V P +E + ++ G DRID + + I +YK+ Sbjct: 819 NSDLDQFIGHHY--NNPTEILHVEAPFTFQVEEVDVNFRGIWDRIDRNEKNEIVIKEYKS 876 Query: 921 GDNPKKETAQ--KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + + QL L A + FY L ++ I Sbjct: 877 NVSRRSRNVALMAKKSLQLQLYVFAYQR--------------FYKSLPDSVELSIIGTKD 922 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 + A +++ K++I+++ + + S + Y Sbjct: 923 RALLAVTKDDENEKDMIKLIKETADQIRKHKFQPTPSFGECMMCPY 968 >gi|300712679|ref|YP_003738492.1| nuclease subunit B-like protein [Halalkalicoccus jeotgali B3] gi|299126363|gb|ADJ16701.1| nuclease subunit B-like protein [Halalkalicoccus jeotgali B3] Length = 1060 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 96/992 (9%), Positives = 236/992 (23%), Gaps = 186/992 (18%) Query: 111 ELARLILIWRNKLPDIIKDLY----------PESPLSLPISPANAIWLAKNLADIIDIIE 160 EL+ ++ ++L I ++ + S P L ++ Sbjct: 63 ELSDVVRRAHDRLIAPIPEVDTLDRQRIIEQAVADSSHFEKPRQYTNFVSELIRALEEAG 122 Query: 161 TEEKKWEDLH-ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + + + AL + + + + + A +L Sbjct: 123 YQ--TPDAITTALSTTDLPSERIDVISEIVDRYSTYRDLIAHPAAQPRSQLYESLANTSG 180 Query: 220 EHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 II++G T P +++ +A I+LP Sbjct: 181 SLTTAFPSVETIILSGYTDPAPVEVAVINRLAEEFPLTILLPT--------------TNG 226 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +T + + + L+ + + + S + + + Sbjct: 227 NTADPIDTDGADRHLARTHEAYEPLEYT-TEYVPSTDQTQLQTAVSRMYTHA-------- 277 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALIT 393 V+ A E +A LR L + + L Sbjct: 278 ---------ASTEPPVETDTVSWHTAPTPDREVRHLARRLREQLADPTRPSPDETRILAP 328 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 ++ +GI S I L T + + + + L +P Sbjct: 329 GLLTYRDQISDIFAEYGIEYTTSLSILLEQTYAGRAIQDAIALCIE-ETSEPLTRLATNP 387 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + + A R + + +S + V QS Sbjct: 388 VVSLSDIDTAALVALER------RYRPCDLETLKGRSRSKWLTTLTQIQQSVTRAQSNDG 441 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 LV+ + L+ + + Sbjct: 442 TAAIHGIANLVETLK--------------------------------LETNVENLPEDVE 469 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS-TLFILG 632 + + ++ + + + + I + +G V + + + I+G Sbjct: 470 GGYERRAISRAKRILQSLLRICEHDELDIDDPLTEIEQAFEGVRVPAPKQHHANRVRIIG 529 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-EMA 691 ++ + + + L + G E P + ++ + + + + A+++ A + F + Sbjct: 530 LEDTLMADCEALYVLGATEENLPGHQSRPRYF-QQIADAAGVLPADRHQELARYRFGAIV 588 Query: 692 NGTRHLIYTRSLRE-NNIPTIASRWLQRLLVLGG-------------------------- 724 + + T + + S ++ L Sbjct: 589 SNADSVHITTPKETMDGEQILPSALVEELDRTATVTQTSGLADERRGSCEDVQRALAGSP 648 Query: 725 ------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 ++ + +C + Sbjct: 649 PDKLEELLNGPSATETFTPAQIESSRAGAECASNRATPGPSVHDGRLPTESLDEVGDRLT 708 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + YS S + + Y R +L+ D R G + H + + + Sbjct: 709 KQPYSPSRLNTYAQCGFKYYLRNGFELEEPDEESADTGRFAIGDVVHETLERFYTELAKE 768 Query: 827 ----------NTPEINHLMKQIIDSHFE--KENLPPHIDIIWRHLF-------------- 860 + ++ + E+ D Sbjct: 769 TTGGVDLTEYDETDLRQRLYAAGKEAVADSDESFSSPFDRQQLAALFTGIVPPEDNRFFL 828 Query: 861 ---------HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI------ESIGIHLTGFADRI 905 + FL E + + F + + ++G DRI Sbjct: 829 GTDEGDEESTGLLVEFLRRE-QRDGDWQPRFFEQWFDGEAGPIQTPDGTELPVSGLIDRI 887 Query: 906 DLLKS--GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFY 962 DL + DYKT + ID QL + +++ + Y Sbjct: 888 DLDTETPAAARVLDYKTYKA-DTNDVIRGIDFQLLAYTFGAERFLETELGDPHQRVEAGY 946 Query: 963 --IRLKQKFKIDCITNDKKKYSADELSEKSLK 992 ++ + + + +++ L+ Sbjct: 947 RIVKPPTTITHKQSLPKTIESNLEIPADQFLQ 978 >gi|291284148|ref|YP_003500966.1| Exodeoxyribonuclease V, gamma subunit [Escherichia coli O55:H7 str. CB9615] gi|209761104|gb|ACI78864.1| DNA helicase RecC [Escherichia coli] gi|290764021|gb|ADD57982.1| Exodeoxyribonuclease V, gamma subunit [Escherichia coli O55:H7 str. CB9615] gi|320662031|gb|EFX29432.1| exonuclease V subunit gamma [Escherichia coli O55:H7 str. USDA 5905] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + + ++ ++ + D + + +D E + + Sbjct: 596 NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|30064164|ref|NP_838335.1| exonuclease V subunit gamma [Shigella flexneri 2a str. 2457T] gi|30042421|gb|AAP18145.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2a str. 2457T] gi|313647885|gb|EFS12331.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2a str. 2457T] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNSLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396 + + S + + + E + L L+E + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 T +++ P + + L+++ G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|146312906|ref|YP_001177980.1| exonuclease V subunit gamma [Enterobacter sp. 638] gi|145319782|gb|ABP61929.1| exodeoxyribonuclease V, gamma subunit [Enterobacter sp. 638] Length = 1124 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/975 (11%), Positives = 254/975 (26%), Gaps = 123/975 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P + V + Q L+ F + G + I Sbjct: 11 DVLEALMEFIVEREHPLDPFEPE-----MVLVQSTGMAQWLQMSFAQKFGIAANI--EFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + F L P S + +L+ I + LP + LS Sbjct: 64 LPASFIWDMFVRVLPDI----PKQSAFSKQSMSWKLMSILPDMLPRDEFVML-RHYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA AD+ D +W + + L A TE+ Sbjct: 119 TDKRKLFQLASRTADLYDQYLVYRSQWLNRWEAGELVDGLPDAQVWQAPLWKALVEHTEK 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + H + Sbjct: 179 LGQPQW-HRANLYDRFIATLEAASQRPEGLPSRVFICGISALPPVYLNALKALGKHVDIH 237 Query: 257 IVLPGLDCHIPTAIW--NTITEKSTNITSSNTTYSTHPQY------------------SL 296 I+ I TI T + P + Sbjct: 238 ILFTNPCREYWGDIQDPRTIARFVTRQRRRLFEDRSIPLFKDSAGAAQRFNEEGIQDLPN 297 Query: 297 AKLLDFLDIKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTSDMR 340 L + + R+ V L + + ++ I Sbjct: 298 PLLASWGKLGRDYVHMLSDITSSGEGDVDAFADINPDSLLHNVQSDILDLQNRVIAGITA 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADR 396 +K + + + + + E + L L + + ++ AD Sbjct: 358 EEFARSDKKRKLDPDDRSLTIHMCHSPQREVEVLHDKLLALLQDDPELTPRDIVVMVADI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + +S + SLL+ + L+ Sbjct: 418 DSYSPFIQAVFGSATGERYLPYAVSDRRARQSHPALQAFISLLSLPDSRFISEDVLALLD 477 Query: 452 HPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ +F E+ L + + +R + ++ + + Sbjct: 478 VPVLAARFDIDEEGLRYLRQWVNESGVRWGIDDDNVQEFSLPPTGQHTWAFGLTRMLLGY 537 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + + L + + + L+ K + W + L Sbjct: 538 AMESSQGEWNDVLPYDESTGLIAELVGHLASLLMQLNRWKRELMQPRPLDAWLPICREML 597 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 ++ L + + E + ++ + I + D +T+ +D E + + Sbjct: 598 KDFFLPDSDTEAAMALIE--QQWQAIIDEGISSHYDQPVPLSLLRDELTQRLDQERISQR 655 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRALAPLGF--DLMSQQPQRGDRSRRD 712 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + +N S +Q L+ G + Sbjct: 713 DDRYLFLEALISAQQMLYISYIGHSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLNCD 772 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + Y++ R+ P K Q +E Sbjct: 773 KSEQKVKAHITHCHSRMPFDPTNYVENERQSYAREWLPAAKNSGIAHSDFIQELEPRPTE 832 Query: 775 ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + ++ L+++F + PD G + + +L+ + Sbjct: 833 TLTFEQLQRFWAHPVRAFFQQRLQVNFRSEDSEIPDSEPFTLDGLSRYQLNQQLLNALVE 892 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + ++ + + ++ +E+ Q Sbjct: 893 QENAQMLFRRYRAA-GQLPFGAFGEIVWDAQCQEMQALADRVIEN---RQPG-------K 941 Query: 886 PAKMAIESIGIHLTG 900 ++ + GI LTG Sbjct: 942 SLEIDLNCNGIQLTG 956 >gi|324119861|gb|EGC13740.1| exodeoxyribonuclease V [Escherichia coli E1167] Length = 1136 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|300920323|ref|ZP_07136761.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 115-1] gi|300412648|gb|EFJ95958.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 115-1] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKSHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|281179847|dbj|BAI56177.1| exonuclease V gamma subunit [Escherichia coli SE15] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|331648582|ref|ZP_08349670.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M605] gi|330908874|gb|EGH37388.1| exodeoxyribonuclease 5 gamma chain [Escherichia coli AA86] gi|331042329|gb|EGI14471.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M605] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 ++L + + + I G + P + + + H Sbjct: 177 DKLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYACEWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|320656511|gb|EFX24407.1| exonuclease V subunit gamma [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + ++ S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLEPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + + ++ ++ + D + + +D E + + Sbjct: 596 NALFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 1202 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 75/677 (11%), Positives = 172/677 (25%), Gaps = 58/677 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + K P + G+ V F Sbjct: 79 GTGQVAPEQVLGLTFTNKAAGELAERVRKALVKAGITDPDVIDPDNPPGEPVISTYHAFA 138 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 139 GRLLTDHGLRIGLEPTARLLADATRYQLAARVLREA--------PGPYPALTRSFPDLVG 190 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195 +L + + + E+L A E A L + Sbjct: 191 DLLTLDSELAEHLVRPEELRAYDAELLSSLEGAKLSNAELRKIPETAAARRELADLVVRY 250 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E + A RAE +++ +++ + A L++ + Sbjct: 251 RAAKRERDLLDFGDQIALSATLARTRAEVGAILRDEFRVVLLDEYQDTSVAQRVLLAGLF 310 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G V D W + + + + ++ + L Sbjct: 311 GGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRLATRQAL----------- 359 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S ++ + + + + + + V EE Sbjct: 360 ------SENRRSGGRLLDLANGLAEPLRALHAGVEALRPAPGAEHDGQVRCALLRTHAEE 413 Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 IA +L + K+ A++ ++ L + +++ L + Sbjct: 414 IDWIADSLAHLVRTGKEPGEIAVLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVA 473 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L ++ + ++ L+ P + G + L + L + R + L Sbjct: 474 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVSHARVGADDDPDRRL 533 Query: 489 KSLVLDRIATQ----KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + V ++ + + + + L + + Sbjct: 534 AAAVEGVDPSEVISLADALDTFLEAPLEDPAEADDGLPFSADARVRFARLAAELRDLRRS 593 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + ++ V L E + + + A Sbjct: 594 LADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAASDGEATLLAFL 653 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +T+ +L +S+ L +D + + GL G +P + + Sbjct: 654 GFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWT 713 Query: 665 SRVMQSDLNLKTAEKYI 681 ++ L+ + Sbjct: 714 AQGKVLPHELRGDADTL 730 Score = 56.9 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 89/742 (11%), Positives = 178/742 (23%), Gaps = 57/742 (7%) Query: 217 AEAEHLMKGTKGPIIIAGSTGSIP-ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 AE + + P+ + G +G + + V L + W Sbjct: 445 AEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGP 504 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + +H A++ D R + V +FL Sbjct: 505 RDLALLGRRARLLVSH-----ARVGADDDPDRRLAAAVEGVDPSEVISLADALDTFLEAP 559 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITAD 395 D D + + F+ +A D R A + L L + L + Sbjct: 560 LEDPAEADDGLPFSADARVRFARLAAELRDLRRSLADPLMDVLHRVLAVTGLEVELSASP 619 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 LA R + L+ F A TL + + A ++ A+ Sbjct: 620 HALAARRRETLSNFLDVAASFAASDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKV 679 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 K L A+ + ++ + + + Sbjct: 680 LTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHELRGDADTLPDIEAWDSR 739 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW-----------TKLTVTCLQNV 564 + + + Y T L W + ++ Sbjct: 740 GMKAFHEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSDFLHALYEHC 799 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 EE + +L + + + ++ Sbjct: 800 AAGYGEIEAWAEEPEENEENPALHEAAADHAWPLPLDDTALARRRAAAETVLAYLERVAS 859 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + S + + + ++ ++PF + + Sbjct: 860 HENAH--PSAPSAVHDPTSYDDPDWPPPEDAESPHEDPFDEAYGDLAHDEAPYGEDDVPE 917 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 E + S +P A+ R G + + W R Sbjct: 918 EGLLEDDGDDDADWESWSTDRPTVPHQAAAPEARPHPAGPPPLT---PEEARTIASWDRD 974 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 LD T + R + + S++ +L DP A+ + + P Sbjct: 975 LDALTGELLRARASVTDVPLPA--SLTASQLLELAADPDGF-AQELARPMPRPPQ----P 1027 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 RGT FH + ++ E + LP I + Sbjct: 1028 AARRGTRFHAWVEARFEELRLP---------------MLEPDELPGSEAEIADERDLEAL 1072 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVDITDYKTG 921 E + V +P ++AI + G D + + +I D+KT Sbjct: 1073 KD--AFERTPYAHRTPYRVEVPFQLAIAGR--VVRGRIDAVYRKEGNDGTTYEIVDWKTS 1128 Query: 922 DNPKKETAQKLIDPQLSLEAAA 943 + QL++ A Sbjct: 1129 RTRTADP------LQLAVYRLA 1144 >gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152] gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152] Length = 1255 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 63/590 (10%), Positives = 153/590 (25%), Gaps = 76/590 (12%) Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + A G + + + P L+E + ++ Sbjct: 651 RIAPTDDPAPAGPAADDHRGLIDQSSAEVLRGLLVGAADPALLDGLTEVESAPLRRVLRA 710 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + ++ + S + V + + +L ++ Sbjct: 711 LDRARAARRRGAGLEDVLWALWTASRLERRWVAQSERGGAVGMQADRDLDAAVGLFDAAA 770 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + +++ +++ +P + +L + +D + + Sbjct: 771 AYVDRLPRAG-----IEGFVEYLSQQEIPHDTRPLTTPGEEVALLSAHAAAGREWDVVAV 825 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNL----------KTAEKYIGQAAHDFEMANGTRH 696 G+ EG+WP + L DL ++A + + R Sbjct: 826 AGVQEGIWPNPRPRGTLLHTEDLVDLLAGVGGAGEHVSRSAPILAEERRLLLVACSRARR 885 Query: 697 LIYTRSLRE--NNIPTIASRWLQRLLVLGGT----------------------------- 725 + ++ + + SR+L LL Sbjct: 886 SLLVTAVESVTGDRDLVPSRFLAELLGHDEDGEPGVLPVVDPGRALVMHSLVAELRGAVC 945 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----------PKPFPPLEAQPRTYSFSEI 775 D + ++R + R D + + + + S S + Sbjct: 946 DPTADPERRRRAAFQLARLADAGVRGTAPEEWYGTAELSCADPLWSEEDDAVVALSPSTV 1005 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 +QL P R D +G+L H L++ + Sbjct: 1006 EQLRTCPLRWALERHGGT------DGDNPHAVKGSLVH----TLVQALAGRVPEAQVRAA 1055 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI- 894 + + R + +FL + + + V +P + + Sbjct: 1056 LDKAWRAIDPGDGW--HSRQERRRTEAMLETFLAWVRNTRGELTQAGVEVPVDCVLPARS 1113 Query: 895 ----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + G DR++ + G I D KTG NP + A QL+ A +G+ Sbjct: 1114 EDERPVRIRGRIDRLERDEFGRFVIVDVKTGKNPISKQAAADHA-QLATYQVAAASGALD 1172 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 + + + + + T + + + + Sbjct: 1173 --PEGEPGGARLVYVAKPHTKEGATQRMQDPLDAAALDSWRDTIHQAAAA 1220 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 56/412 (13%), Positives = 98/412 (23%), Gaps = 33/412 (8%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK---------KSTILPIIKS 80 LV+ ASV + +K+A +LR +T P++++ Sbjct: 60 LVDLAAGRIAAGADPASVLVLTHSKQAAADLRDAVTVRLAGHDSPTGGVPGATTEPLVRT 119 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L N P RLL A + R L + D+ + P Sbjct: 120 LHSYAFSVLRRHASAHGNPPP------RLLTGAEQDAVLREMLRGDLADIAEGATGLWPQ 173 Query: 141 SPANAIWL---AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 A+ L A+ L D++ EDL L E W+ A FL + Sbjct: 174 RLHAALGLDGFAQQLRDLMLRATERGLGPEDLERLGREHDRPEWVAAGRFLLRYEQAL-- 231 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + EA + G+ AT + + Sbjct: 232 ------------LLRWSVGVEAPEATAPALDAAELLGACLDALATDAELLAAERARIRYL 279 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 + P A + T+ ++ V Sbjct: 280 FVDDAQHLDPQAATLVRVVGAAAHTAVVAGDPDQAVFTFRGADARFAADPGAPADRRVVL 339 Query: 318 NEMYGRSMVIS-KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 E + + + + V + +EA IA Sbjct: 340 RENHRSGPSVRLAAARIAAKLPGAAPHRPAVAAESGGGDGVAVRVRVLATPAKEAALIAD 399 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 LR + + + L R + + P + Sbjct: 400 HLRRAHLTGGVPWSRMAVIVRSVPLSLAPLRRALLAAGVPVHQPAVDVPLAR 451 >gi|157162274|ref|YP_001459592.1| exonuclease V subunit gamma [Escherichia coli HS] gi|157067954|gb|ABV07209.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli HS] Length = 1122 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 114/1084 (10%), Positives = 259/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G + +P + + QL LE Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLR-------WSPSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L +++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|333000937|gb|EGK20507.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-272] gi|333015561|gb|EGK34900.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-227] Length = 1122 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 115/1087 (10%), Positives = 259/1087 (23%), Gaps = 167/1087 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396 + + S + + + E + L L+E + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIV 998 E +L Y + ++ +L +E++L L +++ Sbjct: 983 E------------------HLVYCASGGNGESRLFLRKDGEWRFPQLAAEQALHYLSQLI 1024 Query: 999 TLLQNGE 1005 + G Sbjct: 1025 EGYREGM 1031 >gi|331658970|ref|ZP_08359912.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA206] gi|315295776|gb|EFU55093.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 16-3] gi|331053552|gb|EGI25581.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA206] Length = 1122 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773 + + L ++ + + F+ Sbjct: 771 ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 774 -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|145218886|ref|YP_001129595.1| hypothetical protein Cvib_0065 [Prosthecochloris vibrioformis DSM 265] gi|145205050|gb|ABP36093.1| hypothetical protein Cvib_0065 [Chlorobium phaeovibrioides DSM 265] Length = 921 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 96/859 (11%), Positives = 225/859 (26%), Gaps = 83/859 (9%) Query: 136 LSLPISPANAIWLAKNLAD--------------IIDIIETEEKKWEDLHALKNEKYGMWW 181 L L +A+ L ++LA+ ++ E + + + W Sbjct: 4 LLLTPDAPSAMKLRRSLAESGALSGVIAGTWPELMAQAEGCVVLPPAVTDWEEKLNMGVW 63 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + F + + + + + + L+ A GT G I + P Sbjct: 64 NVPGAFWRRSLEAVLAEEKKSITALIGSHLAMLLEA------AGTAGRIEGVDRLSANPR 117 Query: 242 TARLMSTVANHPNGAIV-----LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + + +A L ++ + + TI + + Sbjct: 118 LQKRVEDLAALHEAMGHALPPALHSINRILKASPERTIRRMRIYHDEGWLSTGPWQDALM 177 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + P S ++ +P+ K Sbjct: 178 GHLNGSAGEAED---------PQLRKALEKSVEGSRAPSGSSLKVMQEQLFTLPSGGKAL 228 Query: 357 --SDVALIEADNEREEAISIAIALRMSLD-----ENKKKSALITADRNLARRVKLELTRF 409 + + + +E A ++ ++ + + L+ +D + + + T Sbjct: 229 LDGSLQWLRVRDGMQEMEVAAGMMQEAVRSTTGMQYANMALLLPSDISYSHAAREVFTAA 288 Query: 410 GINIDISAGIPLSTTL--HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 GI + S T + +LL + + +++A+L+ PL + E Sbjct: 289 GIPL--SGLRDAYETRDLGGEAVLNLLYCLEDVPPAVSMASLLSSPLMPWSTVEGNRLA- 345 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 D +D+++ + A K + + + DH+ Sbjct: 346 ---------------QDAIDMRNTLKLLEAQSKKAHRMLELVTGGPAD--------ADHL 382 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + + + + + + + Sbjct: 383 KARMEEFAGLLDEAEELKSHRERAGQLCKAIAAELTASAGPVKWQELRDIVQITPQAAPA 442 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + G + E + +L +S++ I+ T E + L Sbjct: 443 LPEPTREGVAVFYEGQEPWRTVRQLYAAGCSAGHFPESASASIIFTDE------ELEELK 496 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + + + + L T D + + T + Sbjct: 497 AATGMDMERAAVRGERNRKRFRRQLTSATEAAVFLVPGRDAQGKSLAPSSSITFAEALFE 556 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 L L +K G+ + + + + Sbjct: 557 TGNDRGLVLTLENSLEYNMAGGLPEKPGKEGVPPRELVPEDLDFKKKNLLETGMQKDGTL 616 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + S S + L+ P A R L + + D GT+ H + L Sbjct: 617 KPESPSRLDTLLVSPLAWLFER-LDIKAREWAPEKLDPLKMGTVAHAVFEHLFTPEGIAG 675 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHL---FHKISHSFLEH-EEKIQSSIEKIFV 883 I +L+ ++ D+ +K I + LE E + Sbjct: 676 AEGIRNLLPELYDNAVKKTCPFLLRREWTVERENLMQGILKAALEWSEILEAMQARVVET 735 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQLSLEAA 942 I + + G+ + G AD + L + + DY K+ +++ D Q L Sbjct: 736 EISLEGTL--SGVPIHGNADLLLKLDDNRMLVVDYKKSSSGSREKRMNAGWDLQAELYRT 793 Query: 943 ALKAGSFSQIDCRKVANLF 961 ++ G + Sbjct: 794 MIETGGPEKGKKVSGEAAE 812 >gi|300906651|ref|ZP_07124340.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 84-1] gi|301302958|ref|ZP_07209085.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 124-1] gi|300401552|gb|EFJ85090.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 84-1] gi|300841622|gb|EFK69382.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 124-1] gi|315256682|gb|EFU36650.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 85-1] Length = 1122 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKSHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|323183366|gb|EFZ68763.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1357] Length = 1122 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLDSSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|24114103|ref|NP_708613.1| exonuclease V subunit gamma [Shigella flexneri 2a str. 301] gi|24053236|gb|AAN44320.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2a str. 301] gi|281602178|gb|ADA75162.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella flexneri 2002017] gi|332753542|gb|EGJ83922.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 4343-70] gi|332753678|gb|EGJ84057.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-671] gi|332754347|gb|EGJ84713.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2747-71] gi|332765776|gb|EGJ95989.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri 2930-71] gi|333000343|gb|EGK19926.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-218] gi|333015067|gb|EGK34410.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri K-304] Length = 1122 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNSLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396 + + S + + + E + L L+E + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 T +++ P + + L+++ G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4] gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4] Length = 1140 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 83/785 (10%), Positives = 195/785 (24%), Gaps = 64/785 (8%) Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-----IVLPGLDC 264 + L +E ++ I+I + P L + + P G+ + D Sbjct: 341 ARELLRDSEVRARVRARYLRILIDEFQDTDPIQLDLAELLTSGPGGSGTEPGRLFTVGDP 400 Query: 265 HIPTAIWNTIT------EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + + + T + + L+ + + ++ Sbjct: 401 KQSIYRFRRADITTYLRARGGSATGTQGPDVERLSTNFRCSRPVLEWVNDVFSEVLTAAD 460 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + + P + + + A EA +A + Sbjct: 461 GIQPEYRALEPAPDRPPHDPSHGPRPFVFRSEEVPEHCPPEANETTRRHWAEASDVARVI 520 Query: 379 RMSLDENKK--------------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 ++ E A++ R ++ L GI+ A + T Sbjct: 521 ATAIREGWTHESKNGEHTPLRLGDIAILLPSRGALPMLETCLDHAGIDFRTEASSIVYGT 580 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L + A+ D ++ ++ PL G + RA G Sbjct: 581 PEIRDLLLAVRAVANPADEASLVGALRSPLFGCGDDDLLRWRAG---------GGGWVLT 631 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L +A +R E E V + Sbjct: 632 APAPDDLASSPVAEGMRYLSALGRSTRRPGELLERLVHDRMVFESVAESPRRRDLWRRIR 691 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 W + + + L E+ +++ ++ +A + Sbjct: 692 FVIEHAWQWEESASDPARADLREYADWAMALTAEDARVPEAAIPEIGVDAVRITTIHASK 751 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ ++ G + L E + + + Sbjct: 752 GLEYPMVIVAGMSRGWPNSNERLL----WTEDDPPRPAVSFSAAVRDPAFDSAAGLEKLH 807 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG-----TRHLIYTRSLRENNIPTIASRWLQRL 719 +R + L + + A + A + + P + Sbjct: 808 ARAERIRLLYVATTRAESRLAVSGQYAATQKGKPRSDVWASLLGSVIEEPDAPALVEYGE 867 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKL----------DYTTKQPHYKRPKPFPPLEAQPRT 769 +L + + + TR++ T + + + Sbjct: 868 NLLEAAAAPEVDVPDEAGWTERTRQIAARSAERAGWSATRIVHPDAVDATPVDEDVERQP 927 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + + +A R +L P + D GT H++ R+ Sbjct: 928 SLPQQLAAALRERFAPAPARPEELPPRPRYTPIASGPDVGTAVHHLAEHTDLGRLLGPAA 987 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHL-------FHKISHSFLEHEEKIQSSIEKIF 882 + + M ++ + ++ + L E +++ + Sbjct: 988 DPDSAMADWDRWAADQLVALGLGGGLQGSRNPEAVAEMVSVARTALTSEPVRRAASRTHW 1047 Query: 883 VNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 +PA A+ + + + G D + G + I DYKT T + QL Sbjct: 1048 AELPAAGALSTADGARVAVDGVVDLVVQEDDGSLSIIDYKTDVAVTTGTVDE-YLLQLCA 1106 Query: 940 EAAAL 944 A L Sbjct: 1107 YADLL 1111 >gi|116629673|ref|YP_814845.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri ATCC 33323] gi|311110684|ref|ZP_07712081.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri MV-22] gi|122273389|sp|Q043G5|ADDB_LACGA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116095255|gb|ABJ60407.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri ATCC 33323] gi|311065838|gb|EFQ46178.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri MV-22] Length = 1158 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 102/993 (10%), Positives = 254/993 (25%), Gaps = 158/993 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + L + + ++ L +++ +++L Sbjct: 71 SFSRLAWYFLKDEAIKLPQILDDAASVMLLEQIVKDHQDELKLFQNKNQIT--------- 121 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + L + + I + DL + NEK L+I + +RL E Sbjct: 122 ------SGALRQMYEAILSVRAGNIDLENIDNEKLNEETSYKVHDLQIIYDDFIDRLSEK 175 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 A+ L+ + + + + ++ Sbjct: 176 FAT--KDEMQLLLNEFLAKSDSLSTMVFYFSDFSHFSLQELTSVRLISKKAKNTT----- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + K+ + Y + + + L+ ++ + + Sbjct: 229 -----------LAFKTKIGKIDSKAEQGDYDYVVQRTIRQLEHFWQNQQLNYQTTEFPLT 277 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 ++ S ++ + + + P ++AD+ EA +A + + Sbjct: 278 KTNPSSLLNGVWTKTNGFDESLSKFLQP-----------VKADSRYAEAYFVARTIYQQV 326 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++ + N L + I + + +L Sbjct: 327 ALNNYRYQDFLVLAPNLNEYETYLTPILRQNNIPFFNDLQKEMKYHPLVVAVENLQQIFK 386 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + L+K L ++ + LE L L + Sbjct: 387 RGFQTDNVIALMKTQLFIPEWYKSVARYQNDVDLLENFVLAHGIKG-------ELWKKPL 439 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DW 553 + + + +S E+ + + + + + T K + + + Sbjct: 440 KSFVDAEVIALDKSEQEVEELDRLRKYFISILSEFFEDIETEKDPQAGVTIFWNFLIKNR 499 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + D E+ TL+ L + + + ++ D++ Sbjct: 500 VAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLKDYLLVAK--EFSLEQFFDLLISGF 557 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + I + + + + G P+ F S LN Sbjct: 558 SEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGATSSNLPQIEKIPGFFSSENLEQLN 617 Query: 674 --------LKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLV 721 L+ +K + ++ + + + + N S + ++LL Sbjct: 618 DGNNASGYLEDQQKINNLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLR 677 Query: 722 L--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----------------------------- 750 L +L L + + + Sbjct: 678 LTQANEFSQHDLPSSAGDLLTFMTNPEASLGYLTYLKGKQEVNVDSILELTEQEIGEVAQ 737 Query: 751 ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 P PK L S S+++ + + + L L F+ Sbjct: 738 NVLEGSNFKNVPENLPPKLAQELYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FE 795 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEK-----ENLP 849 + D G +H L+KK KN + + + ++ + L Sbjct: 796 NELDVIQAGNYYHETFDYLVKKIKEKNLDFADLTDSKLNQLLIEVREELKEKGRYRQLLN 855 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG---------- 895 + H + + + + + + + + + Sbjct: 856 DPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYSELSFGKNQKVTGLSYSWKDENNQK 915 Query: 896 --IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALK 945 + L G DR+DL K + V + DYK+ + + Q+ LK Sbjct: 916 KIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLK 971 Query: 946 AGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976 + F+Q V FY + + Sbjct: 972 KNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004 >gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] Length = 1157 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 91/843 (10%), Positives = 196/843 (23%), Gaps = 64/843 (7%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + S L + A A L + I E + L AL + Sbjct: 319 LDEQARLSTLRERLKAARAHARTCALFTLAAEIHRRVELQKARLGALDFDDLIH---KTL 375 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ V A + + AG+ R Sbjct: 376 DLLTRVDSAWVLYKLDRG-IDHVLIDEAQDTNPEQWEILRRITEDFCAGAGARSGEMPRT 434 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLD 304 V + G + + + + A+ +L +D Sbjct: 435 RFAVGDPKQSIYSFQGAAPEEFETTRQAWRKAALGAGLTFEDVGLTLSFRSARGVLRGVD 494 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + +S V + + P V +EA Sbjct: 495 ATFALAEHFRGLSFGDEAVGTVHETVRIGAPGQVELWPAETPSPEPEPDAWVQPVDAVEA 554 Query: 365 DNEREEAISIAIALRMSLDENKKKS----------ALITADRNLARRVKLELTRFGINID 414 ++ L+ V L G+ + Sbjct: 555 GAPALVVARRVARAVRCWTTTGDEAGRIWRPGEILILVRKRSAAFEGVIRALKAEGVPVA 614 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + ++ + L + A D + +AT +K PL + A+ Sbjct: 615 GQDRLDIAAHIAVMDLVAAGRAALLPEDDLTLATALKTPLVGLSDDDLVRIAARREASES 674 Query: 475 ALRGNKNSYDIMD----LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 R + D + L T + + L L+ + Sbjct: 675 LARALARHAEAGDPAAQRGAAALAEWQALARETGPFGFYAELLGPRGGRTRLVARLGGEA 734 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + T T + D G T+ Sbjct: 735 GDAIDVFLTAAVQAEQGTDAPSLTGFLARYAPSGGRDAG-----------GHTVKRDLES 783 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + + + ++ ++ +P L + D + G Sbjct: 784 VRDEVRVMTVHGAKGLEAGLVVLIDGC-EPLGRNDPPLLPMEIG-------DGTAVHGGT 835 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNI 708 VW + + + L+ + +++ + + + + Sbjct: 836 VPVWSPSKGHDCPAIAAARDALHDRARQEHN---RLLYVAMTRAKDRLVIAPYRGSDKET 892 Query: 709 PTIASRWLQR--LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 P ++R + GG + + + + + + P + Sbjct: 893 PEAWCEMVRRGLVEAFGGVERTEMPYGPAETWREGAAVPMPPAPPVSAPAAEALPDWLFR 952 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P + L DP RG L H ++ L Sbjct: 953 PVAPEAEPLPPLRPSGLGAADE----PRRSDARSSDPAARRRGVLIHALLEHLPAVAPE- 1007 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI- 885 ++ + P + R L + + Sbjct: 1008 ---------RRETAATAFVAARAPGLAPPDRAAIVAAVMRLLADPDLAVLFGPAARAEVT 1058 Query: 886 -PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943 ++ + + G DR+ + V + D+KTG P ++ + Q++L AA Sbjct: 1059 LAGRIPLRGAEWPVHGRVDRLAVT-DEAVWLCDFKTGRPPSEDAPVPAGMAAQVALYAAL 1117 Query: 944 LKA 946 L Sbjct: 1118 LAR 1120 >gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] Length = 1185 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 99/950 (10%), Positives = 226/950 (23%), Gaps = 120/950 (12%) Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 F + G +L +L D V ++ + + R +EL L+ Sbjct: 253 AEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQPDPVRRMELIEAALLTA 312 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 + + +A+ LA++ + L + Sbjct: 313 KGEKKSDAYVINKGMQKSAPDLVDALTLARDH-------VVACRNRYRLVRMLVATKS-- 363 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIII 232 A + + + + + + + I++ Sbjct: 364 ---ALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILV 420 Query: 233 AGSTGSIPATARLMSTVANHP--------NGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + + P ++ ++A + D + + + Sbjct: 421 DEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERD 480 Query: 285 NTTYS-THPQYSLAKL------------LDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 T + + ++ L +D D K +S + +++ Sbjct: 481 ETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAG 540 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------------ 379 P + D AL E+ A IA + Sbjct: 541 HPGTVEVWDMVAPETTEDEEDWTAPFD-ALRESAPATIVARRIAARIADMIGNQTIIEKG 599 Query: 380 -MSLDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 E L+ + EL R I + + + L+ + L +L + Sbjct: 600 VERAVEPGDILVLVRKRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFV 659 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D +++A L+K PL + + A + + + + I Sbjct: 660 VLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSG----EETSRLSIV 715 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 T K + ++ + + L D + + L ++ + ++ Sbjct: 716 TDKLRHFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGL 775 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + E +++ + + + G Sbjct: 776 PGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVF--------------- 820 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + G+ + L + +P + F + +++SD Sbjct: 821 ----------VVDGGSKAFNHSHVPKLRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKT 870 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL--QRLLVLGGTDFFDNLKKRG 735 + + R + L G Sbjct: 871 AAEDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKAALAENQDHCQPQAFSADG 930 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ----------------PRTYSFSEIKQLI 779 + + + +P E PR S S +I Sbjct: 931 EEWQGLVWRKSEARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTII 990 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 +D A + F + RG L H ++ L + + Sbjct: 991 DDGADDLA--VRSPLFGEKTEASSLALQRGKLVHRMLQALP-------DFAESEREEAAR 1041 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIH 897 P D R + L + + M + Sbjct: 1042 RYAERAARFWPATD---RERLIQAVLRVLSEPAVQPAFSANSRAEVSIMGTMTLGRQHYA 1098 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 ++G DR+ + + V + DYKT P +E + QL++ L Sbjct: 1099 VSGRIDRLAVERD-RVILVDYKTNRVPPREARELPFSHVAQLAIYREILA 1147 >gi|329120232|ref|ZP_08248900.1| exodeoxyribonuclease V gamma subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327462573|gb|EGF08896.1| exodeoxyribonuclease V gamma subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1066 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 104/843 (12%), Positives = 210/843 (24%), Gaps = 80/843 (9%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V ++ + + + E G + I A L L+P + + Sbjct: 34 EIIVQSQGMRRFIGNYLAEHGGIAANI--RFSLPAGFNWRLTRALLPDIPELSPFDTEVM 91 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW- 166 R L + ++ L A A LA LADI D W Sbjct: 92 RWRLLGLFVSDGLSRPETAQAQAALSGYLC--GGGAAAYQLAGELADIFDQYLVYRPDWI 149 Query: 167 -----EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + L L ++ W FL +++ + + Sbjct: 150 DAWQRDRLLGLGGDE--AWQAELWRFLNDGQT--------------APHRVEMWHRLEQA 193 Query: 222 LMKGT----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 L I + G T P +L+ +A H I I + Sbjct: 194 LQSPPDGLLPERICVFGITALAPMYLQLLHALAQHTEVHIFALNPASEYWGNIIEPA-QI 252 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 ++ + HP LL L + D S S Sbjct: 253 LAAGGDADPAAAGHP------LLASLGKQGRDFFNALAESEASTDLSAYPEAPLSDSLLH 306 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALIT 393 ++ + ++ A + E + L L + A++T Sbjct: 307 RLQYGLQTLTLPDKTATLDDSIRIVCAHSPLRELQILKDRLLELLAHDPTLQPRDIAVLT 366 Query: 394 ADRNLARRVKLE---------LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + L ++ +S PL ++ + Sbjct: 367 PNIEPYAPYIEAVFGQESGRPLPYSVADVKLSRRRPLLHAAEQTL-----AIFESRFEAD 421 Query: 445 AIATLVKHP--LAKFGFPEKYLSRAKNALELVALRGNK---NSYDIMDLKSLVLDRIATQ 499 I L+ L +FG + L + +E + +R L + Sbjct: 422 KILGLLDTEPVLQRFGLTREDLPLLHDTIEHLNIRWGWDETMRGGADPLFTWQQGLDRII 481 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + ++ + + L + + +++ WT+ Sbjct: 482 LGWILPDNGELWQNHAPWHTDPAVIPLLARLAAFLRRLARWRQTWQTPATVAVWTQRITD 541 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 LQ++ ++ + L+ + + + + R + + Sbjct: 542 MLQDL--FVQDNQARQDMQQLAQALARWRQETELARFGGELDCSVINRHLARYLGSRS-- 597 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + R L F TL L GLN+G +P+NT F + Sbjct: 598 EAGFLRGGITFCSMVPMRSLPFQTLCLLGLNDGQFPRNTRAAAFDLIARHPRRGDRARRD 657 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + +HL + R NN S L L GQ Sbjct: 658 DDRYL-FLEALLSARQHLHLSYVGRSIHNNEALAPSALLNELADCLAD-------MTGQT 709 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 T + Y R + + + +P Y + Sbjct: 710 ASAITEQHTQQHPLQAYSPRYFDNSGLTSSRADYAAALNRPSENPAPFYTAPLTGDTPP- 768 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 + D + N + +++ ++ P + F + + Sbjct: 769 ---QSVAHNDFLDFWKNPVRHWLRRNLDWRAPYHTQA--TPTNEPFAPTDERETAAAYTQ 823 Query: 858 HLF 860 Sbjct: 824 ARL 826 >gi|238854241|ref|ZP_04644585.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri 202-4] gi|238833052|gb|EEQ25345.1| ATP-dependent nuclease, subunit B [Lactobacillus gasseri 202-4] Length = 1158 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 103/993 (10%), Positives = 255/993 (25%), Gaps = 158/993 (15%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + L + + ++ L +++ +++L Sbjct: 71 SFSRLAWYFLKDEAIKLPQILDDAASVMLLEQIVKDHQDELKLFQNKNQIT--------- 121 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + L + + I + DL + NEK L+I + +RL E Sbjct: 122 ------SGALRQMYEAILSVRAGNIDLENIDNEKLNEETSYKVHDLQIIYDDFIDRLSEK 175 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 A+ L+ + + + + ++ Sbjct: 176 FAT--KDEMQLLLNEFLAKSDSLSTMVFYFSDFSHFSLQELTSVRLISKKAKNTT----- 228 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 + K+ + Y + + + L+ ++ + + Sbjct: 229 -----------LAFKTKIGKIDSKAEQGDYDYVVQRTIRQLEHFWQNQQLNYQTTEFPLT 277 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 ++ IS ++ + + + P ++AD+ EA +A + + Sbjct: 278 KTNPISLLNGVWTKTNGFDESLSKFLQP-----------VKADSRYAEAYFVARTIYQQV 326 Query: 383 ---DENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + ++ + N L + I + + +L Sbjct: 327 ALNNYRYQDFLVLAPNLNEYETYLTPILRQNNIPFFNDLQKEMKYHPLVVAVENLQQIFK 386 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + L+K L ++ + LE L L + Sbjct: 387 RGFQKDNVIALMKTQLFIPEWYKSVARYQNDVDLLENFVLAHGIKG-------ELWKKPL 439 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLVTYKTNKNSTCGNLSIS--DW 553 + + + +S E+ + + + + + T K + + + Sbjct: 440 KSFVDAEVIALDKSEQEVEELDRLRKYFISILSEFFEDIETEKDPQAGVTIFWNFLIKNR 499 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + D E+ TL+ L + + + ++ D++ Sbjct: 500 VAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLKDYLLVAK--EFSLEQFFDLLISGF 557 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + I + + + + G P+ F S LN Sbjct: 558 SEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGATSSNLPQIEKIPGFFSSENLEQLN 617 Query: 674 --------LKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTIASRWLQRLLV 721 L+ +K + ++ + + + + N S + ++LL Sbjct: 618 DGNNASGYLEDQQKINNLDQNYQFGNALSLASDKIYISYPVINTANEQLEPSIFYKQLLR 677 Query: 722 L--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----------------------------- 750 L +L L + + + Sbjct: 678 LTQANEFSQHDLPSSAGDLLTFMTNPEASLGYLTYLKGKQEVNVDSILELTEQEIGEVAQ 737 Query: 751 ----------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 P PK L S S+++ + + + L L F+ Sbjct: 738 NVLEGSNFKNVPENLPPKLAQELYGDRIETSVSQLETYYQNSFEYFLNYGLHLKKR--FE 795 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEI------NHLMKQIIDSHFEK-----ENLP 849 + D G +H L+KK KN + + + ++ + L Sbjct: 796 NELDVIQAGNYYHETFDYLVKKIKEKNLDFADLTDSKLNQLLIEVREELKEKGRYRQLLN 855 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK--MAIESIG---------- 895 + H + + + + + + + + + Sbjct: 856 DPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYSELSFGKNQKVTGLSYSWKDENNQK 915 Query: 896 --IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKKETAQKLI-----DPQLSLEAAALK 945 + L G DR+DL K + V + DYK+ + + Q+ LK Sbjct: 916 KIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SAKKFDLGLFANGISMQMISYLEVLK 971 Query: 946 AGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976 + F+Q V FY + + Sbjct: 972 KNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004 >gi|331654304|ref|ZP_08355304.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M718] gi|331047686|gb|EGI19763.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli M718] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|256019382|ref|ZP_05433247.1| exonuclease V subunit gamma [Shigella sp. D9] gi|332280501|ref|ZP_08392914.1| recC protein [Shigella sp. D9] gi|332102853|gb|EGJ06199.1| recC protein [Shigella sp. D9] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSAKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLDSSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPNSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|170683034|ref|YP_001744990.1| exonuclease V subunit gamma [Escherichia coli SMS-3-5] gi|170520752|gb|ACB18930.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli SMS-3-5] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 103/976 (10%), Positives = 237/976 (24%), Gaps = 127/976 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRLDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + Q Y R+ P + Q ++ E Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQQLPFTLPE 830 Query: 775 ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG 900 ++ + G+ +TG Sbjct: 939 QSMEIDLACNGVQITG 954 >gi|323971649|gb|EGB66879.1| exodeoxyribonuclease V [Escherichia coli TA007] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|320182270|gb|EFW57173.1| exonuclease V subunit gamma [Shigella boydii ATCC 9905] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 117/1086 (10%), Positives = 261/1086 (24%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + E + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAAMMLIE--QQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768 + Q Y R+ P + P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C] Length = 1152 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 91/824 (11%), Positives = 203/824 (24%), Gaps = 109/824 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234 A I K +T+ N + ++ + I++ Sbjct: 340 AAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDHILLDE 399 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P +++ +A N V D + ++ Sbjct: 400 AQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAENGRII 459 Query: 287 TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 YS D L + N ++ + + Sbjct: 460 QKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEQAKTVHEPIRIHSP 519 Query: 337 SDMRNTDILENKIPN-IQKCFSDVALIEADNER-EE--AISIAIALR--------MSLDE 384 D+ D + K S V ++ R E A +I+ L+ L Sbjct: 520 GDVIIWDAISKKTNEFPDDWLSTVDHLDTPQIRLAEKIAETISNWLKNGEMLPAKQRLLR 579 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 L+ + L + + + + L+T + L +L + + D + Sbjct: 580 AGDIMVLVRKRDQFVPALSRALKLRHVPVAGADRLQLTTHISVRDLMALARFVLQPQDDL 639 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI---ATQKN 501 ++A ++K PL E Y + + ++ DR+ T + Sbjct: 640 SLACVLKSPLFSLSEDELYQLAVQRT--GSLWESLSIHSSSHTVFKIIFDRLNTYRTLVD 697 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 V + S + DK ++ + L + + + L Sbjct: 698 KMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTIQKTG-----LPGLQAFL 752 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + ++E L + + + ++ + +D Sbjct: 753 EILSINEPEIKRELD-----QNCEEVRIMTVHAAKGLEGAIVFLVD-------------- 793 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 G+ + L + ++ L+ Sbjct: 794 ---------PGSAIWHPQYAPHFLKCSLGDKQAFIWRPNAQHHTKHFDKVLSRLKERAEE 844 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + +L+ +K + W Sbjct: 845 EYKRLLYVGMTRAEDRLIIC---GYTNQRETPNTWLQLVKKALKPHAVPIKGPAEDITAW 901 Query: 742 TRKLDYTTKQPHYKRP---------KPFPPLEAQPRTYSFSEIKQL------INDPYAVY 786 R + + P P + K L IND + Sbjct: 902 -RYCITPSCPAPMYQEISCETHQIFPPLPAFFHNKVPTESTLSKPLKPSVVGINDTKTKF 960 Query: 787 ARRILKLDFIPHFKKDPDRTDR----GTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 + + P + + G H ++ L K + SH Sbjct: 961 FPQKERFSISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKA-SH 1019 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + K + IW I + + S++ V + + I ++G Sbjct: 1020 WHKTQREKALHHIW-----TILDN--PDLKPFFSNLSHAEVALMGIVKINGKEQMVSGQI 1072 Query: 903 DRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALK 945 DR+ + + V D+KTG ++ Q++L L+ Sbjct: 1073 DRLCITHN-SVFFADFKTGLSPENDTDIKQHHLLQMALYQKLLQ 1115 >gi|16130726|ref|NP_417299.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K-12 substr. MG1655] gi|89109605|ref|AP_003385.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K-12 substr. W3110] gi|157158584|ref|YP_001464157.1| exonuclease V subunit gamma [Escherichia coli E24377A] gi|170018935|ref|YP_001723889.1| exonuclease V subunit gamma [Escherichia coli ATCC 8739] gi|170082390|ref|YP_001731710.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K-12 substr. DH10B] gi|238901957|ref|YP_002927753.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli BW2952] gi|256024677|ref|ZP_05438542.1| exonuclease V subunit gamma [Escherichia sp. 4_1_40B] gi|293416066|ref|ZP_06658706.1| exodeoxyribonuclease V [Escherichia coli B185] gi|300923195|ref|ZP_07139250.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 182-1] gi|300950555|ref|ZP_07164462.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 116-1] gi|300958140|ref|ZP_07170297.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 175-1] gi|301026209|ref|ZP_07189675.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 196-1] gi|301326150|ref|ZP_07219536.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 78-1] gi|301645211|ref|ZP_07245164.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 146-1] gi|307139506|ref|ZP_07498862.1| exonuclease V subunit gamma [Escherichia coli H736] gi|312972960|ref|ZP_07787133.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1827-70] gi|331643506|ref|ZP_08344637.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H736] gi|119669|sp|P07648|EX5C_ECOLI RecName: Full=Exodeoxyribonuclease V gamma chain; AltName: Full=Exodeoxyribonuclease V 125 kDa polypeptide gi|56966627|pdb|1W36|C Chain C, Recbcd:dna Complex gi|56966630|pdb|1W36|F Chain F, Recbcd:dna Complex gi|266618791|pdb|3K70|C Chain C, Crystal Structure Of The Complete Initiation Complex Of Recbcd gi|266618794|pdb|3K70|F Chain F, Crystal Structure Of The Complete Initiation Complex Of Recbcd gi|42689|emb|CAA27604.1| recC protein (aa 1-1122) [Escherichia coli] gi|882714|gb|AAB40469.1| exonuclease V subunit [Escherichia coli str. K-12 substr. MG1655] gi|1789186|gb|AAC75861.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K-12 substr. MG1655] gi|85675638|dbj|BAE76891.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K12 substr. W3110] gi|157080614|gb|ABV20322.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E24377A] gi|169753863|gb|ACA76562.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli ATCC 8739] gi|169890225|gb|ACB03932.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli str. K-12 substr. DH10B] gi|238861054|gb|ACR63052.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli BW2952] gi|260448130|gb|ACX38552.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli DH1] gi|291432255|gb|EFF05237.1| exodeoxyribonuclease V [Escherichia coli B185] gi|299879801|gb|EFI88012.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 196-1] gi|300315162|gb|EFJ64946.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 175-1] gi|300420504|gb|EFK03815.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 182-1] gi|300450123|gb|EFK13743.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 116-1] gi|300847115|gb|EFK74875.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 78-1] gi|301076481|gb|EFK91287.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 146-1] gi|309703177|emb|CBJ02511.1| exodeoxyribonuclease V gamma subunit [Escherichia coli ETEC H10407] gi|310332902|gb|EFQ00116.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1827-70] gi|315137426|dbj|BAJ44585.1| exonuclease V subunit gamma [Escherichia coli DH1] gi|315615208|gb|EFU95845.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 3431] gi|323941570|gb|EGB37751.1| exodeoxyribonuclease V [Escherichia coli E482] gi|331036977|gb|EGI09201.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H736] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|226940130|ref|YP_002795203.1| RecC [Laribacter hongkongensis HLHK9] gi|226715056|gb|ACO74194.1| RecC [Laribacter hongkongensis HLHK9] Length = 1159 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 103/943 (10%), Positives = 219/943 (23%), Gaps = 87/943 (9%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 L + L R +P L V ++ Q L+ E + L Sbjct: 15 AEMLRDVILAWLARDPLSSP--LDDEVFLVQSQGMAQWLKHALAESPAGIAAALDFQLPQ 72 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 G +L + P S + RL L + + + Sbjct: 73 G---FLWRCYRAVLGEDSVPAQSPFDKAPLSWRLYRELPAWLHEPVFAPLARF-VEADAD 128 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA-----ADFLKIASKYWT 196 P LA LAD+ D ++ W ++ A + + Sbjct: 129 PRRLYQLAHQLADLYDQYQSYRADWLTGWENGHDDITRHGRPAPLPEGERWQAELWRRLA 188 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + A E +++ G + T + ++ H + Sbjct: 189 GQLASARHTHRAAVHQRFVAALREGTPPPGSLPERVVVFGLSALPQQTLEALDAISRHSH 248 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY-------------------- 294 + + + I + S P Sbjct: 249 VLMAVNNPCRYYWGDIVEGREWLRRQAEQRHRRRSGMPAALDDSTLHLHAHPLLASWGRQ 308 Query: 295 --SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 LL D + + + L + + L + + Sbjct: 309 GRDFIALLADYDRWQSAAATHAQDIDLFDEAVPAGTLPLLQQVQQAVLELEPLPAEPHRL 368 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDEN-----KKKSALITADRNLARRVKLEL- 406 +A A + E + L D+ + ++ D + + Sbjct: 369 PLPDHSIAFHVAHSPLREVEILHDQLLAMFDDPELALKPRDVMVMVPDISSYAPFIRAVF 428 Query: 407 ------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH-------- 452 I +S +ST L LL+ + L+ Sbjct: 429 GKLPPDHPRFIPFALSDQSAVSTEPLLRALQQLLDLPALRLTVSEVLELLDVAAMRRRFR 488 Query: 453 ------PLAKFGFPEKYLSR---AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 PL + A EL + L ++L + Sbjct: 489 LRETDLPLLTRWIEGSGIRWGLSAAQRAELGMPDDFDQNSWHFGLDRMLLGYACGAGASW 548 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + D LA L D L T + + + W + Sbjct: 549 QGMAPYDEVGGMDAALAGQLADL-------LSTLAHWRQCLQEPATPAGWQARIAALAEA 601 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + L+ + + + + + D++ + +V + Sbjct: 602 CLDIKDEHDLLLYAGIADTLDNWVATLDGNGLADTRLPLEVVRDVLLGQLADTSVSMRFL 661 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + + R + F + L GLN+G +P++ + F ++ Sbjct: 662 GGA-VNFGTLMPMRAIPFKVICLLGLNDGDYPRSQNRADFDLMAQDYRPGDRSRRDDDRY 720 Query: 684 AAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + R + + +N P S +++L + Sbjct: 721 L-LLEALLSARRRFYLSWVGKSPRDNRPRPPSVLVEQLRDYLAAGWQAAPLGTEPATTGL 779 Query: 742 TRKLDYTTKQPH------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 L + P P + P S+ + + + Sbjct: 780 LAALTTEHPLQPFSPRYFSRAPDARPQPDQPPLFTYDSDWRAIHDATDPPAEPAAALPLP 839 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 +P + D + R+ E++ L + E L P Sbjct: 840 LPDWDGRTDAVTLARFLRQPAATFLHGRLKVRFGELDELAED------EPFALDPLATHQ 893 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + + E E + + + G L Sbjct: 894 LKSRLLEAVRDVPEAETGRHWQAAATRLTEEGGLPFGAAGAQL 936 >gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264] gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis E264] Length = 920 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 91/858 (10%), Positives = 216/858 (25%), Gaps = 154/858 (17%) Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV 249 + + + G + + +I+ P +++ + Sbjct: 186 YEDLTDKKGYLDYSGILNRAVAELTRNRELRERLALRVKHVIVDEYQDVNPVQEAIVAEL 245 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 GA + D W ++ + + ++ Sbjct: 246 RQL--GADICVVGDDDQTIYQWRGSEVQNILTFDRRYND-----------VTQVRLEENF 292 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 G V+ S + + + ++ + D+ + D+ E Sbjct: 293 RSSEGVVALAREFISHLNHRLPKEMKATHAQSYE------------DGDIVALGFDSPEE 340 Query: 370 EAISIA---IALR---------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 EA IA +ALR + L+ + R A V L + I+ Sbjct: 341 EAEYIAKTCMALRGVVVHESSSERGISWSDMAVLLRSVRRDAPAVTAALDAVRVPYVITG 400 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L L + L A +L + Sbjct: 401 MDNLFQKEEVEAARQLFYFLAG------------------EIEMNELRAAWQRADLGITK 442 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV---DHILQCITPL 534 ++ V + A + ++ +K L Sbjct: 443 HALEGAIAAAAEARVDMQDAEIGQFKVYNLQRQFIAFMEKSELREERVPGGRGEIVFYNL 502 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + SD + + + P W + Sbjct: 503 GKFSQAISDFESIHFHSDPVEKYKSFAGFLRFHAENAYPEGWQDNGF------------- 549 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--NEG 652 + I+ +++ L + + + L N Sbjct: 550 ----------------------------VSPDAVRIMTVHQAKGLQWPVVFIPQLVKNRF 581 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPT 710 +N + ++ N F +A T + E N Sbjct: 582 PAKGGGGRNAWHLLPSEAFSNAARYRGGADDERRLFYVAVTRAQKYLHMTWAPHEGNRTA 641 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + L ++ P P T Sbjct: 642 QVASDFY------------------NEVLASKYVKRRVQNYATRQQLTPAPKASVANVTL 683 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 SFS++K PY R + + + G H+ + E+ + + T + Sbjct: 684 SFSDVKYFFECPYQFKLRILYGFNAPLD-----EALGYGKSLHDALAEVHARALRGETID 738 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 +++I+ H P + + K+ +++ +++E F ++A Sbjct: 739 SREA-EELIERHLRAPYAYPDLKDKLKSAAVKVVAAYIRKNAAEFNNLE--FSEKAIEIA 795 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + G+ + G D + + + V I D K+ + A+ + + QL + A + Sbjct: 796 LGD-GVSVAGRIDLVRRMDTDEVTIVDLKSN---DRAQAEAVTETQLHIYAL-----GYK 846 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFIS 1010 ++ R Y+ + + + ++ ++++ T L+ + P Sbjct: 847 ELTGRP---ADYVEIYELDNQRQKRRSVDG----DFTDDVRRDVLAAATALRRNQLP--- 896 Query: 1011 HLRLSEKSNIQSEYDHLA 1028 + +K+ +Y +L Sbjct: 897 -PKPGKKACGACDYCNLC 913 >gi|300936254|ref|ZP_07151187.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 21-1] gi|300458579|gb|EFK22072.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 21-1] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ I + ++ Sbjct: 236 IHLLFTNPCRCYWGDIKDPAYLAKLLTRQRRHSFEDRELSLFRDSENVGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|323935819|gb|EGB32122.1| exodeoxyribonuclease V [Escherichia coli E1520] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMFLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|110834679|ref|YP_693538.1| exodeoxyribonuclease V subunit gamma [Alcanivorax borkumensis SK2] gi|110647790|emb|CAL17266.1| exodeoxyribonuclease V gamma chain [Alcanivorax borkumensis SK2] Length = 1138 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 87/861 (10%), Positives = 227/861 (26%), Gaps = 59/861 (6%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L + + + +PL+P L + T V + Q L+ + + G + + + Sbjct: 16 LTELVADWLQREPLSP--LETETFLVQSNGMAQWLKLQLADALGISAGFQFQMPA----R 69 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 +L + P S + L RL + L L+ + Sbjct: 70 FLWGAYRTVLGEDQVPRTSPFDKSRLLWRLYRLLPTLLNSEHFGPL-RHFLADDVDGRKR 128 Query: 146 IWLAKNLADIIDIIETEEKKW--------EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 LA+ LAD+ D + W + L ++ + + + + Sbjct: 129 HQLAERLADLFDAYQMYRADWLDDWENGNDRLRKTQDRDTFDDFPASQLWQAHLWRALLA 188 Query: 198 RLVE--LNASSPVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATARLMSTVAN 251 + + S ++ + + +II G + ++ ++ Sbjct: 189 DMDDSKQGLSRSAIHRDFMAALTQQQEQGTPPPRLPRRLIIFGISALPQQALEALAALSQ 248 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDV 310 H +++ H I + + + P+ + LL R+ + Sbjct: 249 HCQILMLVQNPCQHYWADIVEDKQLLRRQLDNRKRHLTALPENRVNPLLAAWGKQGRDFI 308 Query: 311 KRLGNVSNEMYGR-----------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L + + R + + + E + S + Sbjct: 309 GLLYDHDDPDSYRSAFQNQIDLFENREPHTLLQQLQQDILDLEPLPEPNRRLPLEMDSSL 368 Query: 360 ALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TR 408 + + E + L + ++ D + Sbjct: 369 QFRIGHSAQREVEILQDELLDRFSNDPTLQPRDVIVMVPDIEAYAPHIDAVFGRLERDDP 428 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSR 466 + +S + + + + SLL+ I L+ P + F E L + Sbjct: 429 RYLPYTLSDRSAGAASPLAQAVESLLHLPQWRFTATDILDLLDVPAVRERFGIDEGDLPQ 488 Query: 467 AKNALELVALRGNKNSYDIMDLK------SLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 ++ +R NS L + + + + + E + Sbjct: 489 LARWIDQARIRWGLNSPQRKTLDVPGFEQNSWAFGLKRMLAGYLLGDGPAWMGIEPLDEV 548 Query: 521 VLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 L + + L T + + + + S W + L ++ L Sbjct: 549 AGLGAELAGRLSRLLDTLEQHWQQSRTDASARQWQQRFTQLLDDLFAPVDEADQTLDAG- 607 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 L+ + E + ++ E++ + + I + R + Sbjct: 608 LRDALNDWLAACAEADFDSLLPLTVARRPLLDALNAESMSQRFMAG-RINICTLMPMRAI 666 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LI 698 F + L G+ +G +P+ F + + E R L Sbjct: 667 PFRHVCLLGMKDGDYPRQQQPMDFDLMRQWGNYRPGDRSRRDDDRYLFLEALLSARDSLY 726 Query: 699 YTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + + R +N S + +L + + + ++ + + Sbjct: 727 ISWTGRNVRDNSERPPSVLVAQLRDHINQRWHTDQGEPVDALTVSHPLQPFSARYFYSAN 786 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 ++++ + +++ L + + G + Sbjct: 787 DASAANNADAHILHTYANEWRALHEEQTHRVDNDQPLPPLE-NNEPISCAALGRFLKQPV 845 Query: 817 TELIKKRINKNTPEINHLMKQ 837 ++R+ + ++ Sbjct: 846 AHFFEQRLKARLKQQRQVLDD 866 >gi|332999576|gb|EGK19161.1| exodeoxyribonuclease V, gamma subunit [Shigella flexneri VA-6] Length = 1122 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396 + + S + + + E + L L+E + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira multiformis ATCC 25196] Length = 1196 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 82/845 (9%), Positives = 193/845 (22%), Gaps = 106/845 (12%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTG 237 L A + A +RA + ++I Sbjct: 388 RLLPYAVAQLKLVFQQHGKVDFTEVAQAALRALGDPEAPTDLALALDYRIRHLLIDEFQD 447 Query: 238 SIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 + + L++ + +G + D + + + Sbjct: 448 TSISQYELVTKLTTGWEPGDGRSMFVVGDPMQSIYRFRQAEVGLFLRARAAGFGNVTLGP 507 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 D S ++ P + + Sbjct: 508 VSLSANFRSQRGIVDWVNATFASVMPQRENISTGSVRYSPSVAVRTALPDPAVSVHPFFN 567 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINID 414 E A + I R DEN +A++ +R+ + L + G+ Sbjct: 568 DDHG---------AEGAKVVEIVARAQRDENCSTTAILVRNRSHLAEILPRLKKAGLRFR 618 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 L L L A+ D +A L++ P + + + + Sbjct: 619 AIEIEGLGRQPVVQDLLVLTRALMHPADRLAWFALLRAPWCGLTLADLHALVSAAPDQSD 678 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + + N +D+ + + + + Sbjct: 679 EASAPGTVQEGEE--------------NAGPGRGTVWEWLQDENRIAFVSADGYERLLRV 724 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + S+ + + L L + E+ E Sbjct: 725 RNVLKACMANRNRQSLRATVEAA-----WLALGGPACLEDEAGLEDASAYLDYLESHEEA 779 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 GS A + + G + P + TL I+ +++ L FD +I+ GL Sbjct: 780 GSIRSLAA------LEEGLTGLSALPDAKADGTLQIMTIHKAKGLEFDCVIVPGLGRLSR 833 Query: 655 PKNTAKNPFLSRVMQSDLN---------------------------------LKTAEKYI 681 ++ + L ++ + Sbjct: 834 SDEKKLFMWMEHLRDEWPETEEEESGGRNDLLLAPIQETGSGSDPIYSWIEKLDDEKECL 893 Query: 682 GQAAHDFEMANGTR-HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 + A R L S + + + + ++ + Sbjct: 894 EDGRLLYVAATRARKRLHLLGSTGVISGNEGGAELRPPPARTLLSKIWPAVESFYREAAA 953 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF- 799 D + + ++ P+ Q S + P + +P + Sbjct: 954 KAVFSDPASCGDNKEQEARDKPVIDQSLRRLVSGWEL---PPAPRALQWEAGPSPLPPWR 1010 Query: 800 -----KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 G + H + + + + ++ + Sbjct: 1011 EVEYSWAGETARLVGNIVHKWLQRIAEDGLADWNAARIIDLRDVFRRQLIACGAISTGKD 1070 Query: 855 IWRHLFHKISHSFLEHEEKIQSSI-----EKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 ++ + + + ++ + I + DR Sbjct: 1071 DSDVAVKRVMAALTHAVSEPRGRWLLGPQQEARSELRMTGHIGGQYMDF--VIDRTFRDV 1128 Query: 910 SGFVDITDYKTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 +G + DYKT + + Q+ QL AA ++A ++ + V Y Sbjct: 1129 AGQRWVVDYKTSSHEGADMGEFLDREQERYRDQLDRYAALVQA-----VEGQPVRRGLYF 1183 Query: 964 RLKQK 968 L + Sbjct: 1184 PLLKG 1188 >gi|193065104|ref|ZP_03046178.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E22] gi|260845484|ref|YP_003223262.1| exonuclease V, gamma chain, RecC [Escherichia coli O103:H2 str. 12009] gi|192927235|gb|EDV81855.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E22] gi|257760631|dbj|BAI32128.1| exonuclease V, gamma chain, RecC [Escherichia coli O103:H2 str. 12009] gi|323160035|gb|EFZ45999.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E128010] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 115/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D H +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCHEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|300815760|ref|ZP_07095984.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 107-1] gi|300820610|ref|ZP_07100761.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 119-7] gi|331669554|ref|ZP_08370400.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA271] gi|331678800|ref|ZP_08379474.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H591] gi|300526874|gb|EFK47943.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 119-7] gi|300531689|gb|EFK52751.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 107-1] gi|331063222|gb|EGI35135.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA271] gi|331073630|gb|EGI44951.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H591] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPTTGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|332344712|gb|AEE58046.1| exodeoxyribonuclease V, gamma subunit RecC [Escherichia coli UMNK88] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 113/1084 (10%), Positives = 256/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAHWETGHLVEGLGEAQAWQAPLWKALVEYTHE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + S + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDATLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALIAAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L +++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|110806759|ref|YP_690279.1| exonuclease V subunit gamma [Shigella flexneri 5 str. 8401] gi|110616307|gb|ABF04974.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella flexneri 5 str. 8401] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 112/1086 (10%), Positives = 251/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADR 396 + + S + + + E + L L+E + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEAPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + S+ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQSIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 T +++ P + + L+++ G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFHTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|254037873|ref|ZP_04871931.1| recC protein [Escherichia sp. 1_1_43] gi|226839497|gb|EEH71518.1| recC protein [Escherichia sp. 1_1_43] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVQLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|218690948|ref|YP_002399160.1| exonuclease V subunit gamma [Escherichia coli ED1a] gi|218428512|emb|CAR09438.2| exonuclease V (RecBCD complex), gamma chain [Escherichia coli ED1a] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773 + + L ++ + + F+ Sbjct: 771 ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 774 -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|218696418|ref|YP_002404085.1| exonuclease V subunit gamma [Escherichia coli 55989] gi|218353150|emb|CAU99005.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli 55989] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|188493611|ref|ZP_03000881.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 53638] gi|194439865|ref|ZP_03071929.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 101-1] gi|253772324|ref|YP_003035155.1| exonuclease V subunit gamma [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162750|ref|YP_003045858.1| exonuclease V subunit gamma [Escherichia coli B str. REL606] gi|300931285|ref|ZP_07146625.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 187-1] gi|188488810|gb|EDU63913.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 53638] gi|194421202|gb|EDX37225.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 101-1] gi|242378370|emb|CAQ33148.1| recC, subunit of RecBCD [Escherichia coli BL21(DE3)] gi|253323368|gb|ACT27970.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974651|gb|ACT40322.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli B str. REL606] gi|253978816|gb|ACT44486.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli BL21(DE3)] gi|300460939|gb|EFK24432.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 187-1] gi|323172875|gb|EFZ58506.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli LT-68] gi|323960735|gb|EGB56358.1| exodeoxyribonuclease V [Escherichia coli H489] Length = 1122 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] Length = 1123 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 83/814 (10%), Positives = 190/814 (23%), Gaps = 124/814 (15%) Query: 186 DFLKIASKYWTERLVELNASS--------PVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 F + + + + A + G I++ + Sbjct: 337 RFASRFLARYADEKQKRGWLDFDDLILKARALLTDKAVAAWVLFRIDGGIDHILVDEAQD 396 Query: 238 SIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT- 287 + P ++ + A + + D + + + + Sbjct: 397 TSPRQWDVIERLTDEFYSGAGARNEVDRTLFVVGDKKQSIYSFQGADPEELDRKGATFEQ 456 Query: 288 --YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR---SMVISKSFLPPDTSDMRNT 342 + L ++ + V + + Sbjct: 457 KIGEAGQFFQRRSLAYSFRSSSAILRAVDGVFDPAIQTGFTNDGHLAFKDRLPGRVDLWP 516 Query: 343 DILENKIPNIQKCFSDVALIEADNEREE-AISIAIA------------------LRMSLD 383 I + V A + + A IA L Sbjct: 517 FIEKAGPDEEGDWTDPVDRRSARHHTVQLAERIARRIKELTTEEHYLPDDSKGGLARRRI 576 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + L+ L + + I + + + L L ++L+ + +D Sbjct: 577 QPGDFLILVQRRSALFSEIIRACKAAELPIAGADRLKVGAELAVRDLAAILSFLATPDDD 636 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 +++AT +K PL + + + E + +N + VL + Q + Sbjct: 637 LSLATALKSPLFGWSEQDLFTLAHYRK-EDHLWQALRNQTEAHAATLAVLRDLRAQVDYL 695 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 R+ LL + + + + Sbjct: 696 RPYDLIERILTRHDGRRKLLARLGPEAEDGINAMLSQALAYER----------------- 738 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 W + + + + + + ++ ++ + Sbjct: 739 -GAVPSLTGFLQWMQTDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVILPDTGRRDVTI 797 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 K + + GT + ++ P + +Q L L Sbjct: 798 KDEIITVDGT---------PVWKASADDTPQPIRARLDEMKEAALQERLRL--------- 839 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRW------LQRLLVL-GGTDFFDNLKKRGQ 736 F +A + +S + L RL G D ++ Sbjct: 840 ----FYVAMTRAEKWLIVAAAGELSKDESSWYQITAAALARLQAEPLGDDGTLRYQQGDW 895 Query: 737 CYLDWTRKLDYTTKQPHYKR--PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 L+ + P +P P + +T S S++ K Sbjct: 896 DALNIVETPEEIVTTPQLDPIFARPAPAPSGEAKTLSPSDLG-------------GAKAL 942 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 GTL H ++ L LM F H Sbjct: 943 AGEAGFDMDTALSYGTLVHELLEHLP-------------LMDAEAREIFLNRLARSHSVE 989 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVD 914 + + + + L + +P ++ + L G DR+ + + + Sbjct: 990 MI-ARAQEEAEAVLRTPALAPLFADTTLAEVPVTGSLGAQ--RLHGTIDRLVIAEDHILA 1046 Query: 915 ITDYKTGD-NPKKETA-QKLIDPQLSLEAAALKA 946 + D+KT P A + Q+ A L+ Sbjct: 1047 V-DFKTNRVVPNAPDACPDGLLRQMGAYAHMLRQ 1079 >gi|325001476|ref|ZP_08122588.1| UvrD/REP helicase [Pseudonocardia sp. P1] Length = 836 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 95/817 (11%), Positives = 198/817 (24%), Gaps = 92/817 (11%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT-----------GKKSTILPII 78 L++ S+ + V ++RA +ELR + G ++T ++ Sbjct: 21 LLDAVVRRVRAGAPPGSLLLLVGSRRAAEELRGRLTALLTQGGDEIAGDFGVRTTRELLV 80 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 +++ + P + + R + ++ + S Sbjct: 81 RTVHSYAFGVLRLHAARHEDPPPRLLASAEQDVVVREL--LAGEIESWNGSVPGSSWPER 138 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 A L +++ +L L W+ AA F + + R Sbjct: 139 LDPALGLPGFAAELRELLLRAAERGLGPAELAGLGTAHGRDEWVAAARFFRTYEEVTLLR 198 Query: 199 LV----ELNASSPVGYQIALMRAEAEH---------LMKGTKGPIIIAGSTGSIPATARL 245 A++P L+ A + + +++ + P L Sbjct: 199 GAAGRSAPQATAPALDSAELVAAALDALAADPGLRDQERERVRHLLVDDAQDLDPQQMEL 258 Query: 246 MSTVANHPNGAIVLPGLDCHI------PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 ++T+A ++ D + N I + +T + L Sbjct: 259 VATLAADAESTLLAGDPDQAVLTFRGADPQGMNAIDAPTEVLTVDHRRQPGVRAAGLRLA 318 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI---------- 349 + ++ + + D + + Sbjct: 319 EKLPGAGPARNRPGHAAGDQRPDGARTDDRPDEQADGAPADGSRAGAGGAADGTGAGAGR 378 Query: 350 ---------------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK 388 P + V + + EA IA LR + + Sbjct: 379 PVDGDGAGAGRPVGGGGMEARPRAEDAGDAVQVRVFGSPSAEAGWIADRLRRAHLVDGVP 438 Query: 389 SALITADRNLARRVKLELTRFGIN-----IDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + + ARR L R +PL L +L A + + Sbjct: 439 WSEMAVLSRSARRTLPALRRALAAAGVPIAAPPDEVPLPRQPAVVPLLLVLRAASRPSAI 498 Query: 444 MAIAT--LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 A L+ PL R A + D A + Sbjct: 499 DADLATSLLTSPLGGGDPLRMRRLRRGLLRMHAAAGHDVRVVPDDDHPDPGEVDPAVASS 558 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS--------TCGNLSISDW 553 + + + V+L + + + Sbjct: 559 DPLLVAMLREAVGGRPDPLVMLSPAEAAPMRDVGRLLDTAARSIASGDSVEDTLWLVWRR 618 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 T L + L ++ + + + + Sbjct: 619 TGLAKRWSDASARGGPGGAAADRDLDAVLALFDAAARYTDRLPGADV-GGFLEYLADQQL 677 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 GET+ P+ + + +L SR + + + G+ EG+WP + L DL Sbjct: 678 PGETLAPQAPRGGAVELLSAHGSRGREWTVVAVPGVQEGLWPDLRLRGSLLGHEQLVDLV 737 Query: 674 LKTAEKY---------IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL---LV 721 AE + + F +A S + SR+L L Sbjct: 738 AGVAEPGSAVSRSAPLLAEERRLFHVACTRARSALLVSAVQGEDE-QPSRFLDELDPRPA 796 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + +R + +L P + P Sbjct: 797 DATEARPVHRPERSLVMAELVGELRRAVTAPDHGDPA 833 >gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] Length = 1161 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 91/853 (10%), Positives = 216/853 (25%), Gaps = 70/853 (8%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHAL 172 L + + + L L+L + +A +A I + E ++DL Sbjct: 317 LAERLQREGARLGALLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLID- 375 Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIII 232 L + W ++ + + Sbjct: 376 ----------KTLAMLDSGAAGWVHFKLDRGVDH--VLIDEAQDTSPKQWKIVARLIDEF 423 Query: 233 AGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP 292 G+ R + V + G + + + T + S + Sbjct: 424 TAGEGARDGIKRTIFAVGDEKQSIFSFQGAVPKEFAEWRDLLQRRFTGAGLTFEKVSFNY 483 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + + + + + S + P D+ ++ +++ Sbjct: 484 SFRSGAAILQSVDHVFRDPAIYRSIHADIDYPVHASLADAGPSLIDLWPLEVPDDRQQIE 543 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSL--------------DENKKKSALITADRNL 398 A+ E E A + + + L+ + Sbjct: 544 GWQAPFDAVSETSPEVRLADKVRGEISELIGRGTRTGPVGQRRPLSYGDVLILVRRRGSA 603 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 V L R GI + + + L+ + L +L +A+ D +A+A +K PL Sbjct: 604 FDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALAVALKSPLFGLD 663 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + + L A ++ ++ + + + Sbjct: 664 DDDLFKLAWQRKGPLRA-ALADHAAGDQRFAAVQRRLESYAARAQVETPFGFYAWLLGGD 722 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A IL+ + P N ++ ++ +L ++ Q + W Sbjct: 723 GADSGRARILRRLGP-----------EANDALDEFLELALSFEQKRAPSLQGFMA--WLR 769 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E + + + + + ++ + T P + L L + Sbjct: 770 EADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPADTQRLNLIRLPGGNAAP 829 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 + ++ G V++ + E + + Sbjct: 830 GSVPAMVWAGRKADD-----------PSVVEQARSAMIEETEDEYRRLLYVAMTRAADRL 878 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ-----CYLDWTRKLDYTTKQPH 753 N + L+ G ++ Y ++ T Sbjct: 879 IVGGCMPGNRNEVRPHSWYDLISKGLESSGLAMQSVPPDGVIKRYCRPEDVIEETGSAMP 938 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 + + R + + P +L RGTL H Sbjct: 939 SQEATVTSLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGTLVH 998 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 ++ L + + + ++ ++ + + F Sbjct: 999 RLLQSLPDIAAGDRSAAAGRFLARNAPDWNSEDRDALAAQVLGLIADARFAAVF------ 1052 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 + V I ++ + ++G DR+ + ++ V I DYKT P + A+ Sbjct: 1053 --GPGSRAEVPIVGRLQRRGGPVLVSGQIDRLVVTET-EVLIVDYKTNHAPPRVEAEAPR 1109 Query: 934 D--PQLSLEAAAL 944 QL+ A L Sbjct: 1110 AYVRQLARYRAVL 1122 >gi|194434353|ref|ZP_03066617.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1012] gi|194417416|gb|EDX33521.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 1012] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 116/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768 + Q Y R+ P + P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|209920270|ref|YP_002294354.1| exonuclease V subunit gamma [Escherichia coli SE11] gi|218555371|ref|YP_002388284.1| exonuclease V subunit gamma [Escherichia coli IAI1] gi|307310568|ref|ZP_07590216.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli W] gi|209913529|dbj|BAG78603.1| exonuclease V gamma subunit [Escherichia coli SE11] gi|218362139|emb|CAQ99748.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli IAI1] gi|306909463|gb|EFN39958.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli W] gi|315062128|gb|ADT76455.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli W] gi|320202464|gb|EFW77034.1| exonuclease V subunit gamma [Escherichia coli EC4100B] gi|323377292|gb|ADX49560.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli KO11] gi|324016324|gb|EGB85543.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 117-3] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|332087358|gb|EGI92486.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii 5216-82] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 116/1086 (10%), Positives = 259/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDRENFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFLLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPR 768 + Q Y R+ P + P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGGRQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 921 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 96/822 (11%), Positives = 210/822 (25%), Gaps = 121/822 (14%) Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + +K T +++ + P +L+ + H GA + D W Sbjct: 214 LDLQRHVKETVKYVVVDEYQDTNPVQEQLIRGLTRH--GANLCVVGDDDQTIYQWRGSAV 271 Query: 277 KSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + + + +D+ R V+R+ + ++F Sbjct: 272 DNILTIEDRYPNVHRVTLNENFRSSSAIVDLARHVVERIPAGERLNKAMTAAGHQTFERG 331 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITA 394 D D E + + + + + + + + L + Sbjct: 332 DLLAQEFPD-TEAEATWLVERMERLRGVPFHDREGS--------EPRGLDWSDFAVLFRS 382 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + A + EL GI I L T + + L D + Sbjct: 383 VKADAGPLVEELRSRGIPYVIKGLTKLFETPEVQAAVTCFRFVAGLADEQDVVD------ 436 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 A L +R V + Sbjct: 437 --------AWVDAGVGLAEGDVRAG-----------------------LPVLTAAMQWDA 465 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L L+ + + + + G L + + + D R Sbjct: 466 SKPWDSTTLQGVFLEFLEAVELREERVPNERGELVYYNLGRFSTAI-----GDFERIHLT 520 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 ++ + + + + + I Sbjct: 521 SEPQQRFDAFAKWVEHQAP-----------------DYYEESDGDNGYAQPNAVVIATVH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL--NLKTAEKYIGQAAHDFEMAN 692 +++ + + + L L + +P + + V++ +L F +A Sbjct: 564 QAKGMQWPAVFLPALRKNTFPASGRGGLGVFHVVEEELIPGAARYRGTEADERRLFYVAV 623 Query: 693 GT--RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 ++L + + + S + L Sbjct: 624 TRAQKYLALSFAPSDKRTGKKRSDFFNE-------------------ATGVHTVLTREVI 664 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 R P P SFS++K L PY+ R + D + G Sbjct: 665 PSPDDRLTPTPRRGTPEVVMSFSDLKYLFECPYSFKLRLLYGFDSPLQKELG-----FGK 719 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 H+++ E+ K+ I + + ++D H R +LE Sbjct: 720 SLHDVMAEIHKRAIEGDIATPEEA-EDLVDRHLNLPFANKAAADQLRPAAETAVRRYLER 778 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + P ++ G+ +TG D I L + + D+K+ ++ A+ Sbjct: 779 HGATLHQTR--YSEQPVEIH-PVPGVTVTGRVDLIKRLDTNETSVVDFKSS---ERAQAE 832 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 L QL L + + D +V NL K + + + + ++ Sbjct: 833 DLTRDQLHLYVLGYRELTGQDADVVEVLNLD----KAGRDTREMVDPEVMTDLGKRVTEA 888 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 +L +S L S ++ + R E Sbjct: 889 ADSLR----------TNRLSRLDNWCTSCASCDFAGICRSRE 920 >gi|170765547|ref|ZP_02900358.1| exodeoxyribonuclease V, gamma subunit [Escherichia albertii TW07627] gi|170124693|gb|EDS93624.1| exodeoxyribonuclease V, gamma subunit [Escherichia albertii TW07627] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 117/1085 (10%), Positives = 265/1085 (24%), Gaps = 163/1085 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLGDPFEPE-----MILVQSTGMAQWLQMTLAQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ L + L+ Sbjct: 63 PLPASFIWDMFVRVLPDIPKESAFNKQSMSWKLMSLLPQ----LLEHEDFTLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 NDKRKLFQLSSKAADLFDQYLIYRPDWLTQWEAGRLVEGLGEAQAWQAPLWKALVEYTNE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + + I G + P + + + H Sbjct: 179 LGQPHW-HRANLYQRFIETLESATTCPSGLPSRVFICGISALPPVYLQALQALGKHIEIY 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDIGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRLLDPQDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDINEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLSIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEELNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKEHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEESEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG-----FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ ++ G+ +TG AD + + P + + QL LE Sbjct: 941 MEIDLDCYGVQITGWLPQVQADGLLRWR--------------PSLLSVAQG--MQLWLE- 983 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVTL 1000 +L Y K + ++ L +E++L L ++V Sbjct: 984 -----------------HLVYCASGGKGESRLFLRKDGEWRFPPLEAEQALHYLSQLVEG 1026 Query: 1001 LQNGE 1005 + G Sbjct: 1027 YREGM 1031 >gi|323978563|gb|EGB73645.1| exodeoxyribonuclease V [Escherichia coli TW10509] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 113/1084 (10%), Positives = 255/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ L+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEELMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W N + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTHE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRPLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L E++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSELIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|331684465|ref|ZP_08385057.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H299] gi|331078080|gb|EGI49286.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli H299] Length = 1122 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDTETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQLG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|257075423|ref|ZP_05569784.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1] Length = 924 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 121/1056 (11%), Positives = 250/1056 (23%), Gaps = 192/1056 (18%) Query: 7 NVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE 66 V S + + + + + + + T++A +EL++ + Sbjct: 23 RVIACP-GSGKTEVIAR-RVAKLIKDGEKPEG--------IVAITFTEKAAEELKTRIRK 72 Query: 67 ITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDI 126 I + P GD+ ++ + R ++ R Sbjct: 73 ILDVEC---PERADFGDMFTGTIHGFA---LDILRELDPYYRTF---DVLEDARRVAYVS 123 Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADII---DIIETEEKKWEDLHALKNEKYGMWWLL 183 Y + + A + ++ + DI+ E+ +L Sbjct: 124 KSQNYYRRIGLVRLENAYGLKYYNVISQFLKSVDIMLMEQIDPGNLTN------------ 171 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGS 238 + + L E L+ E +L+ II+ Sbjct: 172 --KEFAKCFADYMDSLKEDRYFDFATILYNLVYELKNNPEKINLITHRVRHIIVDEFQDV 229 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 L+ ++ V+ D W S+ + Sbjct: 230 DKLQNTLLELLSPVTESICVV--GDDDQGIYHWRGTDVGLIMNFSNPENSA--------- 278 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 + + + S ++ M L+ K D Sbjct: 279 -----KCTDVALNTNFRSTRAVVELSRQFIENNGSRLPKGMTENPGLKRKYEE-----GD 328 Query: 359 VALIEADNEREEAISIAIALRMSLDENK------------KKSALITADRNLARRVKLEL 406 + E +NE++E I + + + A++T A+++ L Sbjct: 329 IQSCEFENEKDELDFIVSKIGELVGTDFLDRNNKPFSLSLSDFAVLTRTNKWAKKIIDRL 388 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R GI +G + Sbjct: 389 DREGIPSVAYSGESIFERPEVEF----------------------------------ALH 414 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + +R K +Y + DL L + S Sbjct: 415 SIAYTFECKIRYGKGNYRVPDLSELSGMYSRIFTIDHFPRADTGIFSRN----------- 463 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 I L + S + D + R + LS Sbjct: 464 ----IAALRKEAEDILSKGTKDYLGDLGLQGFYHRILQAMGADRFDFGEKYNYNLACLSR 519 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS----TLFILGTLESRLLNFD 642 S ++A+ ++W + + + IL +++ L F Sbjct: 520 AISDYESVWIRLRASEVKWFFTFMGVYGKSEYTDPQHQDPSIINAVKILTIHKAKGLEFP 579 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + + + +N + + S+ T E F ++L T S Sbjct: 580 VVFVPDFI-KPNHRTPDRNFVDNVLYDSERYTGTDEDERRVYYTAFTR--SEKYLFMTWS 636 Query: 703 LRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 P +L+ L + K R P Sbjct: 637 RFPEGGVRPRKHHPFLEELPEKYISGPMQLKKSRSGY---------------------PD 675 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + S+SE+ + P R + + GT HN++ + Sbjct: 676 RRTATGEYSTSYSELTSYLRCPNDFLLRNVYGYNAGVPAGFG-----YGTNIHNVLNMIH 730 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + I + ++D F + + ++ S++ K S Sbjct: 731 RDYIRNEKVPDMDEVVAMVDRMFHLRYATDAMSDNMKKAAERVVRSYVAEHSKDFS--RI 788 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLL-KSG---FVDITDYKTGDNPKKETAQ----KL 932 + + + + G D + G V+I D+KT E Sbjct: 789 LETEKRFEFVLGEA--LIAGQIDLLKKTNPDGSLKEVEIIDFKT------EKIDGVYSAD 840 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 D QL A A + V L +D + K++ Sbjct: 841 YDRQLRYYALACLKSLNLKPQKAIVH-----HLDDDSITQVDISDVE-------LTKTVA 888 Query: 993 NLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + V + + P K +Y L Sbjct: 889 EVGKTVDNILKKKFP----PSPESKKCDGCDYRKLC 920 >gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] Length = 1163 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 85/805 (10%), Positives = 196/805 (24%), Gaps = 67/805 (8%) Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT--ARLMSTVANHPNGAIVLPG 261 + + A+ + ++ T A R + V + G Sbjct: 394 KLDRGIDHVLIDEAQDTSPRQWDIIESFVSEFTAGAGARDIRRTVFAVGDEKQSIFSFQG 453 Query: 262 LDCHIPTAIWNTI-TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK--------R 312 + T + + + H S A +LD +D + Sbjct: 454 AAPREFDLRRRAMMTRHAHAKLAFESVSFKHSFRSGAAILDSVDYVFREQAIYKSIHNDD 513 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 V + + + + + + + + + I DV L +A+ Sbjct: 514 AYPVHDALPDAAPAMVELWNLEEPDTREEIEGWDAPFDTISTTSPDVKLARRVTAEIKAL 573 Query: 373 SIAIAL-----RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A + L+ V L GI + + + L+ + Sbjct: 574 IDAGTMTGTTGHRRKLRYGDVMVLVRRRGTTFDAVIQALKHAGIPVAGADRLKLTEHIAV 633 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN--ALELVALRGNKNSYDI 485 L L +A+ D +A+A +K PL + +L + Sbjct: 634 IDLMHLADALLLPQDDLALAVALKSPLFGLDDDDLLAIAPARTGSLRAALQAHADTLPKL 693 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + ++ ++ P + IL+ + P Sbjct: 694 KSVNDFLMQ--CEKRFARVTPFAFFAWLLGGEGGGSGGRARILRRLGP-----------E 740 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 N ++ ++ +L ++ + + W + + + + + + Sbjct: 741 ANDALDEFLELALSYERKAAASLQGFIA--WLRAADTEVKRDMEILRDEVRVMTVHGAKG 798 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 ++ + T P + L ++ D ++ G + Sbjct: 799 LEASVVFLVDTTTSPSDTQ--RLKLIRMAHGNAGPGDVVLWAGAKRDDTEAVAQARAAMR 856 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 + + + + N + L+ G Sbjct: 857 DDTEH-----------EYRRLLYVAMTRAAERLIVGGCKPGNRNNVRELSWYDLIDKGLG 905 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---- 781 + + + R +P P P L Sbjct: 906 ASPLVMTEIETPFGPVRRYTRAGDVEPKVAEDVAAKPAAPAPLPDWLRASAPLEIPRERS 965 Query: 782 --PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 P L RG H ++ L ++ + + Sbjct: 966 IAPSDASDDVSLPTLAPEAALLRQRARLRGQWVHRLLQSLPDIAPDQRKAAAERFLARHA 1025 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISH-SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 F + ++ + + + I F + + V+I ++ I + + Sbjct: 1026 QDGFNQ----DDLNQLAQQVVDLIGEPQFAAL----FAPGSRAEVSIAGRINIGNKIARV 1077 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 +G DR+ + + I DYKTG P + QL+L A L R + Sbjct: 1078 SGQIDRLVITP-HDIIIVDYKTGPAP-RAETPPHYVRQLALYRAVLAKL----YPDRTIR 1131 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSA 983 + +A Sbjct: 1132 GALLWTETARMVEVPSATLDSGLAA 1156 >gi|312964902|ref|ZP_07779142.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 2362-75] gi|312290458|gb|EFR18338.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 2362-75] Length = 1122 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|309793869|ref|ZP_07688294.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 145-7] gi|308122276|gb|EFO59538.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 145-7] Length = 1122 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] Length = 1120 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 106/1027 (10%), Positives = 247/1027 (24%), Gaps = 132/1027 (12%) Query: 2 HNKKPNVFTIAPSSPFFREMIPA-----LLNGTLVENFRYDPLNPLLLASVTIYVPTKRA 56 +++ V + P + + + + P V T++A Sbjct: 48 SDEQARVVSAPADRPLVVVAGAGSGKTETMAARVCWLVANELVAPDA---VLGLTFTRKA 104 Query: 57 IQELRSEFIEITG--------------KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 EL G + + +P + + + L Sbjct: 105 ASELNERIRIRLGALSRHPETDPELKERLAVAMPTVSTYHGYAASLVSEHGLRIGVEPGA 164 Query: 103 --VSNIQRLLELARLILIWRNKLPDII--KDLYPESPLSLPISPANAIWLAKNLADIIDI 158 + + A ++ W + D+ E L+L A L Sbjct: 165 GVLGPAMCWGQAASVVSGWTGDMDDVQLTPLTTVEDVLALAGELGEHDITADRLRAWTAQ 224 Query: 159 IETEEKK-WEDLHALKNEKYGMW---WLLAADFLKIASKYWTERLVELNASS-----PVG 209 +E + + + A L + + R A + Sbjct: 225 LERRIAGYPDAKGKRGPYRPVLEMLARQRARVALLPLVEAFEARKRAAGAIDHSDQVALA 284 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 +IA+ E + +++ + R++ + G VL D Sbjct: 285 ARIAVTAPEVGRRERARWRIVLLDEYQDTSVGQLRMLEALFGRTTGHAVLAVGDPRQSIY 344 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + + L + V+ + + + Sbjct: 345 GWRGASAGTIERFDRTFPGVRSREAQRLTLATSWRNDGAVLAVANAVAGLLPAPEVPLPD 404 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS 389 P T L + + +D A R E L D + Sbjct: 405 LAPAPSAGHGLVTAGLYPTVAQETEALAD---RLAACWRGEDPV----LPPRADGRPPTT 457 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 A++ R + L G+ + + L S + + L + + A+ L Sbjct: 458 AVLVRTRKQLPGIAAALRARGLPVTVVGLGGLLEVPEVSDVVATLTVLVDPSAGDAMGRL 517 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 + + G + ++ + + + ++ D + I ++ P Sbjct: 518 LTGARWRIGPRDLAALESRARALVHSRKPDREDDDDTAPRPSERGSIVEALDDLGDPSAF 577 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 S + + H+ + + D ++ + Sbjct: 578 SPAAYRRLRRLAAELAHLRGRLG-----------ESLPDMVDDVARVLGLETELASAPGV 626 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + +++ F+++ E S + ++ G ++ Sbjct: 627 SPGSARAHLDALHAVAAEFTELAELPSLPAF--LGYLRDAEERERGLEPGEVAVDPESIQ 684 Query: 630 ILGTLESRLLNFDTLILGGLN-------------------------------EGVWPKNT 658 +L ++ L +D + + G+ E + Sbjct: 685 LLTGHSAKGLEWDVVAVPGMTADQFPSRTDTSDSWVKDPGAVPVDLRTTDREELPQLRLP 744 Query: 659 AKNPFLSRVMQSDLNLKTAEKYI----GQAAHDFEMANGTRHLIYTR--SLRENNIPTIA 712 +++ L E + + +HL+ RE P Sbjct: 745 VPGSGDQAAVRAALEDYVEEWKRFGEAEEIRLGYVAVTRAKHLLLCSGSWWREGVKPNGP 804 Query: 713 SRWLQ--RLLVLGGTDFFDNLKKRGQ------CYLDWTRKLDYTTKQPHYKRPK------ 758 S L R G +R + +W + +R Sbjct: 805 SVLLDTVRRACSAGAGVVVAWAERPEEGATNPALEEWPVGMWPADPLSPPRRRALTAAAE 864 Query: 759 ------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI------------PHFK 800 P P A E+++ + D + R Sbjct: 865 LVAGAAPHPLDAAAVLGTGDPEVERWVRDADLLLRERRRIARPTVEVPLPSHLSVSELVT 924 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH-- 858 D + + + T L ++ + + P Sbjct: 925 LRRDPAELARRLRRPMPAAPAPLARRGTAFHAWLEERFSVARLLDLDELPGSGDESAAPD 984 Query: 859 -LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 + +FL + + + V +P + + + L G D + G ++ D Sbjct: 985 GALTALQEAFLASPWADR---QPVEVEVPFETPL--GPLTLRGRIDAVFDDGGGGFEVVD 1039 Query: 918 YKTGDNP 924 +KTG P Sbjct: 1040 WKTGPPP 1046 >gi|323188762|gb|EFZ74047.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli RN587/1] Length = 1122 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAAQFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|218706316|ref|YP_002413835.1| exonuclease V subunit gamma [Escherichia coli UMN026] gi|293406311|ref|ZP_06650237.1| exodeoxyribonuclease subunit V gamma [Escherichia coli FVEC1412] gi|298382047|ref|ZP_06991644.1| exodeoxyribonuclease V gamma subunit [Escherichia coli FVEC1302] gi|300898117|ref|ZP_07116483.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 198-1] gi|218433413|emb|CAR14315.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli UMN026] gi|291426317|gb|EFE99349.1| exodeoxyribonuclease subunit V gamma [Escherichia coli FVEC1412] gi|298277187|gb|EFI18703.1| exodeoxyribonuclease V gamma subunit [Escherichia coli FVEC1302] gi|300358175|gb|EFJ74045.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 198-1] Length = 1122 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 113/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W N + L A +T+ Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTDE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPHGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L +++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 1095 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 104/843 (12%), Positives = 214/843 (25%), Gaps = 108/843 (12%) Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 RL ++ + V + ++R ++ +++ + L+ST+ Sbjct: 284 YDREKIRLGVMDFADQVAGALRIVREHPAVVAELRARYRVVLLDEYQDTSVVQTDLLSTL 343 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G V+ D H W + + + + ++ LL Sbjct: 344 FG---GTGVMAVGDPHQAIYAWRGASAGNLGGFPAAFSPEGGCRHF--SLLTSWRNSARV 398 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + V + RS + + V ++ + Sbjct: 399 LDVANAVLAPLADRSPI-----------------AVGALTSRPGAPDGLVEIVFERDLDT 441 Query: 370 EAISIAIA---LRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 EA +A +R + + + A++ + R L R GI I L TT Sbjct: 442 EADRVASWFAGIRAARQAEGRATTGAVLFRSKKHMVRFGDALGRRGIPHRILGLGGLLTT 501 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + S L I A+ L+ P G + + Sbjct: 502 PEVVDVVSALRVISDPEAGSALIRLLSGPRWAVGLADLRALAQLARRLATHDVALQPLEA 561 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + + + + + + V ++ Sbjct: 562 EVVDRLRATPGADRASLVDALDFLARQNDDHGWLADITPAGRARLREAGTVFAGLRRSIG 621 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + + + +E R + + + + + S A+ + Sbjct: 622 APIPELIRLIEAELRLDIELAANESRGPARIASAQLRAFVDEIRGFLAADESGSVASLLA 681 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---- 660 W+D + D + + + + +L S+ L +D + + L P Sbjct: 682 WLDHAEQ-ADEFAPRTEPPEDDVVQLLTIHGSKGLEWDAVAVVRLVTDELPSLPRDTKGW 740 Query: 661 ---NPFLSRVMQSDLNLKTAEKYIGQAA-------HDFEMANGTRH---------LIYTR 701 S L T + DF +AN R + +TR Sbjct: 741 LGFGILPSDFRGDAAWLPTLGWRGAETQQELKAAIDDFVVANRARQLDEDRRLAYVAFTR 800 Query: 702 SLRE----------NNIPTIASRWLQRLLVLGG-----TDFFDNLKKRGQCYLDWT---- 742 + P S +L G + ++ + L W Sbjct: 801 ARDHLLLSGSTWSGTKKPRRPSVFLDEAAEALGSELVVGEAGEDPYDGERRLLHWPLDPL 860 Query: 743 --------RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR----- 789 +P P L + P + A R Sbjct: 861 GSRRTAVTAAAAEVVAARDAAPAEPDPDLALLLAERAARLQPVHAPAPTRIPASRFKDYV 920 Query: 790 -----ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + P ++ +T GTLFH + + + L + + Sbjct: 921 ADYGAAVDEVRRPMPERPYRQTRLGTLFHAWVEQRSGLVGAGVGLDDGGLWE-------D 973 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM---AIESIGIHLTGF 901 + D E ++++ I V ++ + Sbjct: 974 DDFGASAADAAELQRLRDC------FERSEWAALQPIEVETEIDFVTRRLDGREHVVICK 1027 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 D + +I D+KTG P ++ QL L A A ++ VA LF Sbjct: 1028 LDAVYRRGD-RYEIVDWKTGKPPATAEERRSRMVQLELYREAYHAKHGVPLESIDVA-LF 1085 Query: 962 YIR 964 Y+ Sbjct: 1086 YVG 1088 >gi|218701536|ref|YP_002409165.1| exonuclease V subunit gamma [Escherichia coli IAI39] gi|218371522|emb|CAR19360.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli IAI39] Length = 1122 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 115/1086 (10%), Positives = 260/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 --------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + Q Y R+ P + Q ++ E Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQQLPFTLPE 830 Query: 775 ------IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|291447588|ref|ZP_06586978.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350535|gb|EFE77439.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 634 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 72/586 (12%), Positives = 132/586 (22%), Gaps = 64/586 (10%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A + + +++A ELR G + P + Sbjct: 65 TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 122 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ + + L + Sbjct: 123 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 179 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL + V A Sbjct: 180 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 239 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + G + + + PA RL+ +A + A Sbjct: 240 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 299 Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 A + D V L Sbjct: 300 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 359 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 G + + + ++ + + V E +IA LR + Sbjct: 360 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 419 Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436 E+ + + L+ A V+ LT G+ +++ PL + L + L A Sbjct: 420 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 479 Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460 + D TL+ PL Sbjct: 480 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 537 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 L R AL D P A Sbjct: 538 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 588 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 L + + L T + + + + W Sbjct: 589 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGA 634 >gi|110642989|ref|YP_670719.1| exonuclease V subunit gamma [Escherichia coli 536] gi|191171233|ref|ZP_03032783.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli F11] gi|300995843|ref|ZP_07181275.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 200-1] gi|110344581|gb|ABG70818.1| exodeoxyribonuclease V gamma chain [Escherichia coli 536] gi|190908533|gb|EDV68122.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli F11] gi|300304698|gb|EFJ59218.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 200-1] gi|324011665|gb|EGB80884.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 60-1] Length = 1122 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDSEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 1234 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 125/1040 (12%), Positives = 278/1040 (26%), Gaps = 156/1040 (15%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 T VE + P L+ V R+ QEL + ++ + P Sbjct: 209 AQTKVEELPFYPYIKEDLSLVL------RSCQELLERALSLSKEPGGPAPRA-------- 254 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELA------RLILIWRNKLPDIIKDLY--PESPLSL 138 E F DL L + ++L EL RL ++ ++ + + Sbjct: 255 ENFIDDLEQVNELIRHQDDFEKLYELLPNVNFKRLKTCKGDEYDPVLLEKATDARNQAKK 314 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD----FLKIASKY 194 + + ++ A + + + E L L + + + Y Sbjct: 315 QLEKLKDEYFMRSPAQHLKSLAEMKPIVETLVELVIQFGERFERAKQEKSIVDFSDLEHY 374 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 L E +A L+ EA + +++ + ++ V+ + Sbjct: 375 CLRILAEQDAEG------HLIETEAAKYYQQQFEEVLVDEYQDTNLVQETILKLVSKGEH 428 Query: 255 GAI--VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 + + D + H Q + +D+ + R Sbjct: 429 SSEGNLFMVGDVKQSIYRFRLAEPMLFLNKYK------HFQPDGKETGKRIDLNKNFRSR 482 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------- 365 + + + ++ ++ D + L P + +++ L+ D Sbjct: 483 SDVLDSTNFLFKQLMGETV-GEIEYDEQAELKLGASYPESKDTTTEMLLVHLDQQEAETG 541 Query: 366 -------NEREEAISIAIALRMSLDE---------------NKKKSALITADRNLARRVK 403 + EA IA ++ +++ + ++ A ++ Sbjct: 542 EEREELETVQFEARIIAKKIKELVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMM 601 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 EL + GI + + S++ SLL I + +A +++ PL E Sbjct: 602 EELKKQGIPVYANLSSGYFEATEVSVILSLLKVIDNPYQDIPLAAVLRSPLVHLDENELA 661 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L R + + W+ + Sbjct: 662 LIRTSDKKGTYYDAVKAFMSVTHSDHPTCKKLERFF---QLLRKWRDFSINHSVAELIWE 718 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 V Q + + K ++ D K R + + + Sbjct: 719 VYRDTQYLDYVGGMPGGKQRQANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLG 778 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITR------------------LIDGETVKPKIEKS 625 + FS+ + + ++ + ++ L+D E Sbjct: 779 AAKTFSETEDVVRMMTIHSSKGLEFPVVFTVGLGRNFNMMDLNQSYLLDKELGFGSKYIH 838 Query: 626 STLFILGTLESRL--------------LNFDTLILGGLNEGVW------PKNTAKNPFLS 665 L I + L + L E ++ + A + + + Sbjct: 839 PELRISYATLPLVAMKKKMRKELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQN 898 Query: 666 RVMQSDLNLKTAEKYIGQAAHDF-------EMANGT-----RHLIYTRSLRENNIPTIAS 713 + L E+Y + DF A + ++ + T AS Sbjct: 899 AATGEEWLLPDFERYQSKTYLDFIGPALIRHQAMSSVLEETGDVVLSHPSTFTISFTQAS 958 Query: 714 RWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 L+ + L D G + + ++ +K P ++ S Sbjct: 959 DLLKEDMSLEKKEQDEIVQALMDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVS 1018 Query: 772 FSEIKQLINDPYAVY-----ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + + I D Y+V AR L KK ++GT H ++ + Sbjct: 1019 EIKRMKEIQDEYSVPSSIRKARATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEP 1078 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + I + I+ F + + + + Sbjct: 1079 YDESRIGHLLDSLQQ--RDLLTDEQVQSINQ---EGIAAFFSTSIGQKLLKADWVKREVS 1133 Query: 887 AKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ETA 929 M + + + G D + G + + DYKT + Sbjct: 1134 FSMVLPVKEVYSHIDTEGEPVLIQGMIDCLFET-DGKLYLLDYKTDRVQGRYTGGIDAAV 1192 Query: 930 ---QKLIDPQLSLEAAALKA 946 +K + Q++L A A++ Sbjct: 1193 PILKKRYETQIALYAKAVER 1212 >gi|193212682|ref|YP_001998635.1| exodeoxyribonuclease V subunit gamma [Chlorobaculum parvum NCIB 8327] gi|193086159|gb|ACF11435.1| exodeoxyribonuclease V, gamma subunit [Chlorobaculum parvum NCIB 8327] Length = 1065 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 108/939 (11%), Positives = 233/939 (24%), Gaps = 94/939 (10%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + L++ +P I V ++ + L G + Sbjct: 10 LETLVSAFGDMVAASPLASP--FEREWIVVQSRGMQRWLSMRLAAQFGVWAGA--EYPFP 65 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +V+ F L S L RL+ + + + L Sbjct: 66 NALVQRLFEWLELSKQADTERFSKESICWSLMRLLPGLLERDSFVPL----RAYLDGDRD 121 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 L + D D N+ W + W + E Sbjct: 122 GLKLFQLCGRIGDTFDQYTLFRPGLLSAWETGNDDAARDWQP---------ELWRTLIAE 172 Query: 202 LNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + A +R L I + G + P ++ +A + L Sbjct: 173 SAGKHRGQLKAAFIRKLKNAELPDDFPKRISLFGVSYMPPFHVEMLQALAARIPVNLFLL 232 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 T I + + + + +P LL L + L + Sbjct: 233 SPTREFWTDIVSRRRLFRMSESERALSMEGNP------LLASLGKSGREFAELLLEVGNV 286 Query: 321 YGRSMVISKSFLPPDTSDMRNT------DILENKIPNIQKCFSDVALIEADNEREEAISI 374 G + +++ D E K P V + N E + Sbjct: 287 KGEHEIYDDPSTETLLRAVQSDMLNLRGDATEAKHPAPDASDRSVQVHSCHNPLREVEVL 346 Query: 375 AIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTT 424 L L+ + ++T D + + I+ L Sbjct: 347 HDNLLDLLNRVPSLEPRDIVVMTPDIETYAPYIATVFGAAGNGEPRLPHSIADRRMLDEG 406 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNS 482 + + LL + A+ LV P +F E+ L + +E +R + Sbjct: 407 GVAPAMLKLLELYGSRHTAPALFDLVSSPPVSRRFRLGEEELDTVRRWIEETRIRWGMDE 466 Query: 483 YDIMDL------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 L ++ + +P + + + + Sbjct: 467 RSRSSLGLPPFRENSWRAGLERMLLGYAMPDEGRLFDGVLPFEVAGDAETLGKLADFIDA 526 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + +W + + L++ + L ++ + ++ Sbjct: 527 VDQLSKRFSRPRPLGEWREHFLWILESFIEADADSERELAHVKKEIDSLTALAEHSNFAG 586 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + +A I + ++ + + L R + F + + G+N+G +P+ Sbjct: 587 --EVSAQVMIAWLRGRLEQFEMGLGFMTGG-ITFCAMLPMRSIPFRVVAMIGMNDGAFPR 643 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIAS 713 F + ++ E R + + + +N P S Sbjct: 644 QQRPPGFDLLARKPRKGDRSVRGDDRY--LFLESILSARDVLYLSYVGQSVRDNSPLPPS 701 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--------------------------Y 747 + LL F + L +L Sbjct: 702 VLVSELLDAVERGFEFPDGEDASSRLVVQHRLQGFSPAYFTKGSPLFSYSVENFRALAGR 761 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF---IPHFKKDPD 804 + +P L + RT + ++ + +P A + R L L + Sbjct: 762 NSLDTRPFIEEPLDGLTDEERTVTLDDLARFFANPAAFFLERRLGLKPSSAAEPLGEREP 821 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 G + + EL++ + M + S P + Sbjct: 822 FEAVGLERYAMRQELLEALLEGRDG---RAMLPLFRS--RGLLPPATHGELLFRKLLAEV 876 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 F E ++++ + + ++ G LTG D Sbjct: 877 EEFAEKVQELKGGGTFSQL----DIDLDIGGFRLTGTLD 911 >gi|238792778|ref|ZP_04636409.1| Exodeoxyribonuclease V gamma chain [Yersinia intermedia ATCC 29909] gi|238727886|gb|EEQ19409.1| Exodeoxyribonuclease V gamma chain [Yersinia intermedia ATCC 29909] Length = 1123 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 113/987 (11%), Positives = 238/987 (24%), Gaps = 140/987 (14%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L S +L L+ L + + Sbjct: 62 ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLESPVFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE + N W + Sbjct: 115 LSDDNDKRKIHQLAARVADLFDQYLVYRPEWLASWERGQLIDNLDDAQQWQATLW---VE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + +R E + I G + P + + + Sbjct: 172 LTNYTRQLEQPEW-HRANLYQRFIRTLLESDSCPAGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HP---------- 292 H + ++ + I + + HP Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIEVNLFRHPEQAKQLFNAN 290 Query: 293 --QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 Q LL D L + +++ + + LE+ Sbjct: 291 GEQELSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIDPDNLLHGIQHDMLELEDHAI 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++L + + E + L + + + Sbjct: 351 IGTTAESLAHSDQKRRLDIRDRSLSLHVCHSPQREVEVLQDNLLNLFSTNPELTPRDVIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + IS +LL+ + Sbjct: 411 MVADIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALASKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGITR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + ++S+W L Sbjct: 531 MLLGYAMDSTAGDWRGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSEPRALSEWLPL 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + S I D + +D E Sbjct: 591 CRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDVVPLNLLRDELASRLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD------- 726 + E + L + R +N S + L+ Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSELIEYISQSYHLPGDE 765 Query: 727 -----------------FFDNLKKRGQCYLDWTRKLDYTTKQPHYK----RPKPFPPLEA 765 + + + ++ + Y + RP P Sbjct: 766 MLNADESAQRVIQHLLCWHARMPFAAENFIQHSELQSYAAEWLPSAESKGRPHPEFNQPL 825 Query: 766 QPRTYS---FSEIKQLINDPYAVYARRILKLDF-------IPHFKKDPDRTDRGTLFHNI 815 P S E+ + P + + L ++F D +R + Sbjct: 826 SPEPLSEITLDELIRFYRHPVRAFFQLRLGVNFVIEETELPDEEPFTLDNLNRYQFNTQL 885 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + LI + + + F + L +I LE+ Sbjct: 886 LNALIDEGDINSVFARARAAGTLPYGSFGEL-YWESQQEEMVPLAEQIRSERLEYH---- 940 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFA 902 ++ IE I LTG+ Sbjct: 941 ----------SIELNIELGDITLTGWI 957 >gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] Length = 1196 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 93/851 (10%), Positives = 195/851 (22%), Gaps = 90/851 (10%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAE---------HLMKGTKGPIIIAGSTGSI 239 I +TE A + + G I++ + + Sbjct: 366 GIILHRYTEARRSAGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDHILVDEAQDTS 425 Query: 240 PATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 P ++ +A + V D + K Sbjct: 426 PEQWDIVKALAHEFFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFADAGIRFAALA 485 Query: 291 HPQY----------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 S + L G + + Sbjct: 486 RDAGLIWKSIELTMSFRTVTPVLAAVDAVFADAAKTPGLTAGGPPPKHNAIRLGHAGLVE 545 Query: 341 NTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMSLDE------------NKK 387 + N ++ ++ + A IA ++ LD Sbjct: 546 MWPTEKPDDLNAADPWAPLSDTSEHSPANRLAERIADTIKGWLDRGERLESQGREIRAGD 605 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ A + L R GI + S I L+ + L +L + + D +A+A Sbjct: 606 ILILVRKRNPFAVPMVAALKRRGIAVAGSDRIALTDQIAVQDLMALGDFLILPEDDLALA 665 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++K P+ F + + + ++ + + + P Sbjct: 666 AVLKGPIFGFDDDDLLAIAPGRKSKTLWSALLDSTGVKPEYRDAAETLKRWRAKADFTPP 725 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 ++ S D++ A + +L+ + P ++ L + Sbjct: 726 FEFFSSVLDRDGAR---EKMLRRLGPEAADVIDEFLDLALSYDDGTPPSLTQFLAELRAI 782 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI---DIITRLIDGETVKPKIEK 624 ++ + + ++ + D+ + + P+ + Sbjct: 783 APEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTASGDLSAASLVRLSGLPRPDH 842 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L T+ G + + L + E G+A Sbjct: 843 IPEPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAMTRARDRLYIAGFEGKKGRA 902 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + A + + ++ R T L + Sbjct: 903 ESCWYDAI--SEALLPVAEEIDDNGKKVWR--------IETAQTAELDQSRGEKTRQLES 952 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 + RP+P + P + A D + + Sbjct: 953 EERPAFASERARPEPKLSVPLAPSRLEPYAPDAEGEPIMSAKADAAATYDAPSPLAGNSE 1012 Query: 805 RT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 RGTL H ++ L + + ++ R I Sbjct: 1013 HRFLRGTLTHALLQHLPS-------------VAASGREAIATAFVAKRGAVLSRKARDGI 1059 Query: 864 SHSFLEHEEKIQSSIEKIF-----VNIPAKMAIE-----SIGIHLTGFADRIDLLKSGFV 913 L + +F +P I + L+G DR+ + V Sbjct: 1060 VRETLA--ILSSADFAPLFGPNSMAEVPIAAVIPRPSGSGPALDLSGQIDRLAVTDD-EV 1116 Query: 914 DITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 I DYKT P QL+ AL R+V + Sbjct: 1117 LIVDYKTNRPPPSEVRFVAPAYLYQLAAYRLAL----GEIYPGRRVKAALLWTDGPRLME 1172 Query: 972 DCITNDKKKYS 982 S Sbjct: 1173 VPADVLDGYQS 1183 >gi|187777518|ref|ZP_02993991.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579] gi|187774446|gb|EDU38248.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579] Length = 1147 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + + Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKEGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWNTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDVDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGT 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGVNGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 ISDEEIEKNIIKNLK 1021 >gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] Length = 1147 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 88/845 (10%), Positives = 200/845 (23%), Gaps = 60/845 (7%) Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGM 179 ++ + PL + A A+ + L + I E + L AL + Sbjct: 315 EVKQALLDEQARLIPLFDSLRAARALARTQGLFRLAAEIHRRVEAQKTRLGALDFDDLIH 374 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 D L W ++ + + A G+ Sbjct: 375 ---KTLDLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGAR 429 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 T V + G D + S + A Sbjct: 430 GLTRTRF-AVGDPKQSIYSFQGADPREFELTRRAWERAAKGAELDFADVSLRLSFRTASH 488 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + V + G + S + I E ++ Sbjct: 489 VLAAVDAVFRVPEHFAGLSFEAGTPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA-- 546 Query: 360 ALIEADNEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLEL 406 A ++A AI A + ++ L+ V L Sbjct: 547 APVDAPEPNAPAIVTARRIARAVKAWTTRGDACGRVWRPGDVLILVRKRSAAFEEVIRAL 606 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 G+ + + ++ + L ++ A D + +AT +K PL + Sbjct: 607 KGLGVPVAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRIC 666 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 A+ + D ++ + L+ Sbjct: 667 ARRPFSETLEDALTRHAEAGDAAAIRGLAALRLWIRLAAEN-------GPFGFYAALLGP 719 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + T + + G ++ Sbjct: 720 HGGRSRLVARLGGEAGDAIDVFLAQAAEAETGGDAPCLEAFLADYVVRPGRGRSGLSVKR 779 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + + + ++ ++ L + + L Sbjct: 780 DLEAGRDEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDPAADGPLPP------ 833 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 VW ++ + +S L + E++ M HL+ Sbjct: 834 ------VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGAT 885 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP-PLEA 765 + + R+ + G + ++ W + P P + Sbjct: 886 RETPASWCEMVRIGLERGLGPGEAIETEHGPITIWRDGSAASLAAAAEATALPEPEAVPD 945 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + + E + + D + RG L H ++ L + Sbjct: 946 WLFSNAAPEAEAAPPLSPSGALGAADGQRQPQRRLGDAEARRRGALVHALLEHLPRIEPA 1005 Query: 826 KNTPEIN---HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + +D + + + +I + + E Sbjct: 1006 RRAEAAERFTRARAPALDEGKRTDLVRSVLRLIETPDLAPLFSAQARAEVA--------- 1056 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEA 941 + ++ ++ + +TG DR+ +++ G V + D+KTG P + + Q++L A Sbjct: 1057 --LSGRIVVDGVERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVALYA 1113 Query: 942 AALKA 946 A Sbjct: 1114 RLAAA 1118 >gi|158521071|ref|YP_001528941.1| exodeoxyribonuclease V, gamma subunit [Desulfococcus oleovorans Hxd3] gi|158509897|gb|ABW66864.1| exodeoxyribonuclease V, gamma subunit [Desulfococcus oleovorans Hxd3] Length = 1085 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 91/925 (9%), Positives = 238/925 (25%), Gaps = 91/925 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 A TI V + + L E TG + + + + ++P Sbjct: 28 PFARETIVVQSMGMKRWLSMEMARHTGICA--HNRFLFPNAFLNQMLQTAFADAVPVSPD 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V + ++ L P LA +AD D Sbjct: 86 VGVEAMTWAVFPVLADVFA-----HPALSPLQAYLQDGDVIKRYQLAARIADTFDQYLVF 140 Query: 163 EKK--WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + W L + S+ W E+ E Q + Sbjct: 141 RPDMLLQWEAGALPADPHEKWQAHLWRL-LISQGWAEQRAER------WKQFLSLAQSGA 193 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE---K 277 + + G + ++ + ++ + H I +T + + Sbjct: 194 LAGSTLPSRVSVFGISTLPRFHVQVFAALSAFLEVRFFVLNPCRHYWGDILSTYEKKQVE 253 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + H + + L + R+ + + ++ ++ + Sbjct: 254 TGADARDIPEAARHLETGNSLLASMGMVARDFFAMVEDHPHQETSLFAPAGETTMLACLQ 313 Query: 338 DMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSAL 391 + + + + + + E ++ L + + + + Sbjct: 314 NDILDLKDAADQERVRVDGNDASMQISVCHSPMREVEALHDNLLAMFEADAGLSPEDVLV 373 Query: 392 ITADRNLARRVKLELTRFG-------INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + + + + G + ++ S + L++ Sbjct: 374 MAPNMEVYAPYVEAVFDAGADDGGQRVPYTVTDRRSKSGSPVVRTFLGLMDLWESRFGIS 433 Query: 445 AIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQK 500 A+ +++ + F E R L +R DL + Sbjct: 434 AVLEILESAFVRERFDIGEAEFFRISQWLVDAGVRWGLDGAFKTDRDLPEFSENTWKQGI 493 Query: 501 NNTHVPHWQSRLSEEDKELAVLL-------VDHILQCITPLVTYKTNKNSTCGNLSISDW 553 ++ + + E + + VD + + + G + W Sbjct: 494 DSLVLGCAMAGKGEILFDGLLPYDHMEGSDVDSLEKFLAFWHVLLRFYRQCGGAHAPGRW 553 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 ++ ++++ + +L + L++L G + + + R Sbjct: 554 RQILTALVESMFAADPAVEADL--QVITDALNALGESAAHAGFDGPVDLPVIREFLNRRF 611 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 +G+ + L R + F + L G+N +P+ T F Sbjct: 612 EGQAYGAPFISG-GVTFCSMLPMRSIPFAVICLLGMNVDDYPRQTFSPGFDMIRKHPRPG 670 Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL 731 ++ ++ + + + R L + + +N S + L F Sbjct: 671 DRS-KRNDDRYLFLETLLSARRRLYISYVGHDMRDNSDRPPSVLVGELCDYLRERFDAGP 729 Query: 732 KKR-----------------------------GQCYLDWTRKLDYTTK-QPHYKRPKPFP 761 YL R+L +P P Sbjct: 730 LTDVVEKITTHHRLQPFHPDYFSSDTQARFSYAADYLAAARQLAGGRPGRPAALEPAVPV 789 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH---FKKDPDRTDRGTLFHNIITE 818 P A P+T ++ + P + + L L ++ G +++ Sbjct: 790 PDNADPQTIEVEDLCRFFAHPARYFLTQRLGLRVAETDRIPEEAEPFEVAGLERYDMARR 849 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 L+++ + ++ ++ + + + P + + F+ + ++ Sbjct: 850 LVERLLAEDPAAP---LENALRASGILPHGEPGKRLFE--RLKTGAAGFVAGVRAVTANG 904 Query: 879 EKIFVNIPAKMAIESIGIHLTGFAD 903 + ++ G L G D Sbjct: 905 GLDRRE----IRLDINGTTLCGTLD 925 >gi|313144298|ref|ZP_07806491.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129329|gb|EFR46946.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 757 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 85/541 (15%), Positives = 161/541 (29%), Gaps = 66/541 (12%) Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + H ++ L + + +C + + S+ ++ + ++ Sbjct: 270 LLDKGHNFNFAMGKDIRLSAAYKRLEELLQECAENALDMGLDSESSLKSMGAKSYVQICE 329 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + + R+ + E G+ L + +A E DI++ L++ Sbjct: 330 MIQNAIAPCDDRQSKKVR-EYVGELLFIW--------GGLNLSACELGDILSFLLEELAQ 380 Query: 619 KPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 K + + ++G LESR + ++ N+ V P + + FL+ ++S L + T Sbjct: 381 KSIDDIHGGKIRVMGVLESRGFAYKKAVIVDCNKDVIPNVSENDLFLNSRLRSALKMPTL 440 Query: 678 EKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 H + + E+ AS L L G Sbjct: 441 RDKEQLQKHYYYGVFSTANEVAVAFVENEDK---QASPLLDEL-----AQKTKVSYYNGD 492 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 + P + S +K ++ P Y I ++ Sbjct: 493 LLFSLLPQGRKLA-------YCEDKFFGKMPEVLTPSRLKVFLDCPRKYYYIYIEQMS-- 543 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D G H + + + + KN + +S + +L + Sbjct: 544 ---GAGSDNASLGNALHQCLESVYQPYVGKNLRLDMSEIVSNTESWLDDFSL-KAESALS 599 Query: 857 RHLFHKI---SHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 R + F + + QS IE + + M +E G DRI + Sbjct: 600 RAEIELLKCELRKFFTQANLSEKQSEIEILQLE-GQNMNLELKGFSFYMRPDRIQRVGE- 657 Query: 912 FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQ 967 V+I DYK N + A L +F Q + L+Y ++ Sbjct: 658 IVEIIDYKYRRNFDTKHDMANDF-------AMNLYDFAFKQSNSVYKNLPICLYYWDIRG 710 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 +K E EK L+ L E+ GE F S K E+ L Sbjct: 711 G---------VQKSELQEKGEKLLEKLTEL-----QGEIEF--SKAESRKPCRYCEFVDL 754 Query: 1028 A 1028 Sbjct: 755 C 755 >gi|224437849|ref|ZP_03658796.1| hypothetical protein HcinC1_07745 [Helicobacter cinaedi CCUG 18818] Length = 771 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 85/541 (15%), Positives = 161/541 (29%), Gaps = 66/541 (12%) Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + H ++ L + + +C + + S+ ++ + ++ Sbjct: 284 LLDKGHNFNFAMGKDIRLSAAYKRLEELLQECAENALDMGLDSESSLKSMGAKSYVQICE 343 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + + R+ + E G+ L + +A E DI++ L++ Sbjct: 344 MIQNAIAPCDDRQSKKVR-EYVGELLFIW--------GGLNLSACELGDILSFLLEELAQ 394 Query: 619 KPKIEKSST-LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 K + + ++G LESR + ++ N+ V P + + FL+ ++S L + T Sbjct: 395 KSIDDIHGGKIRVMGVLESRGFAYKKAVIVDCNKDVIPNVSENDLFLNSRLRSALKMPTL 454 Query: 678 EKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 H + + E+ AS L L G Sbjct: 455 RDKEQLQKHYYYGVFSTANEVAVAFVENEDK---QASPLLDEL-----AQKTKVSYYNGD 506 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 + P + S +K ++ P Y I ++ Sbjct: 507 LLFSLLPQGRKLA-------YCEDKFFGKMPEVLTPSRLKVFLDCPRKYYYIYIEQMS-- 557 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 D G H + + + + KN + +S + +L + Sbjct: 558 ---GAGSDNASLGNALHQCLESVYQPYVGKNLRLDMSEIVSNTESWLDDFSL-KAESALS 613 Query: 857 RHLFHKI---SHSFL--EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 R + F + + QS IE + + M +E G DRI + Sbjct: 614 RAEIELLKCELRKFFTQANLSEKQSEIEILQLE-GQNMNLELKGFSFYMRPDRIQRVGE- 671 Query: 912 FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAALKAGSFSQIDCRK---VANLFYIRLKQ 967 V+I DYK N + A L +F Q + L+Y ++ Sbjct: 672 IVEIIDYKYRRNFDTKHDMANDF-------AMNLYDFAFKQSNSVYKNLPICLYYWDIRG 724 Query: 968 KFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHL 1027 +K E EK L+ L E+ GE F S K E+ L Sbjct: 725 G---------VQKSELQEKGEKLLEKLTEL-----QGEIEF--SKAESRKPCRYCEFVDL 768 Query: 1028 A 1028 Sbjct: 769 C 769 >gi|215488140|ref|YP_002330571.1| exonuclease V subunit gamma [Escherichia coli O127:H6 str. E2348/69] gi|215266212|emb|CAS10639.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli O127:H6 str. E2348/69] Length = 1122 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLTCNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|91200828|emb|CAJ73882.1| hypothetical protein kuste3125 [Candidatus Kuenenia stuttgartiensis] Length = 1099 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 97/300 (32%), Gaps = 44/300 (14%) Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFK--KDPDRTDRGTLFHNIITELIKKRINKNTP 829 + ++ P+ + R IL+L+ + + + GT++H I+ L K Sbjct: 775 PTMLETFGACPFQFFMREILQLEPLEEPEKGETISLPKLGTIYHEILDTLYCHLKEKGYF 834 Query: 830 EINHL-------MKQIIDSHFEKEN-----LPPHIDIIWRHLFHKISHSFLEHEEKI--Q 875 + + +I + F K P + + + FL + K Sbjct: 835 DGKAADTNPVEYLHKIANESFVKMGKQIPIPYPLLWELKKDEIVAALIHFLSWDIKQIEH 894 Query: 876 SSIEKIFVNIPAKMAIESIGIH------LTGFADRIDLLKSGF---VDITDYKTGDNPK- 925 + F+ ++A+ G DRID+ KSG + DYK+G Sbjct: 895 TGYSPAFLEARLQLALPKGKFEDYPAIFFKGKIDRIDVKKSGQEIYFRLVDYKSGKAGTE 954 Query: 926 --KETAQKLIDPQLSLEAAALKAGSFSQID-----CRKV----ANLFYIRLKQKFKIDCI 974 + A QL + + + ++ A+ YI + Sbjct: 955 HLLKAAVCGQKLQLPFYISMAEQFLVNTYRKEVSLPSEIIFDEASFVYIARCMNDENGER 1014 Query: 975 TNDKKKYSADELSEK---SLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 K + +E ++ + EI+ +++ G P EK+ ++ L R Sbjct: 1015 CLQKNTINNNEWAQHKEFFWATVHEILAIIRQGLFPTTG----KEKNCQWCKFATLCRKG 1070 Score = 98.5 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 82/702 (11%), Positives = 182/702 (25%), Gaps = 89/702 (12%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L+ + + VPT ++ L+ ++ S +V F + Sbjct: 28 DPLSPIAVIVPTNYMLERLQERLVKKHD---------VSFLNVFFLNFYLLAREICRNSK 78 Query: 102 PVSNIQRL--LELARLILIWRNKLPDIIKDLY--------PESPLSLPISPANAIWLAKN 151 R R+I + I L S +A A + Sbjct: 79 NDIGHIRQEPFIYERIITKLIEQERHHIPSLKNIISPSSIARSMFHSLQDLTDANVNADD 138 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 L +I+ T + L + + L S Sbjct: 139 LRAVINEQLTGGADIQKLSD----------------ISRLFTLFQNTLNASGISHDSNLY 182 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 + + A+ I+ G S + + + LP Sbjct: 183 RSAAKHAADSEYLRKFKYILAYGFYDLTGVEQDFFSEIFRYYPTILFLP----------- 231 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 N T+ ++ L L I R ++ + S Sbjct: 232 ----------YKKNHAVFTYVKHFYESFL--LGIAR-------DIEDLPPDDLQGFSYLM 272 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KS 389 + P+ ++++I + +E IA + +++ Sbjct: 273 DADSETKTSLHGESMPDAPS----LDNLSIINVSGKHDEIWVIAKEILKLINKGYVFGDI 328 Query: 390 ALITADRNLARRVKLE-LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++ + + E I P+ +++ LL + + Sbjct: 329 GIVARELGQYLNIIQEVFQENAIPFTTLDKEPIEKYPLFTMIKQLLLLDRENFYRPMVID 388 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR--IATQKNNTHVP 506 +++ P PE ++ L + R N I S + + + Sbjct: 389 ILESPYFNIPVPELKDVLSRQNLWDIISRTNGIHSGIRCWLSKLEQLKNAMAEPAEEDIL 448 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 +S + E +V + + L T D + + + Sbjct: 449 PHNINISCDQIESLKNIVQLLSNDLLSLQEKATWSQMCQKTKLFLD----KYIHIPSEDI 504 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 D+ +++ +E L S + + ++ D E ++ + Sbjct: 505 DQEIIKRDIFIKERIFCLFDTLSILDRIDK--EITYDQFADTFINACKQEGIQAGTANNK 562 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS----DLNLKTAE--KY 680 + ++ + +R + F L L GLNE +P+ + PFL + L E + Sbjct: 563 GVRVMNAMSARGIPFRILFLVGLNEKEFPRAIFEEPFLPDHTRRILSEALGNHIPEKLRG 622 Query: 681 IGQAAHDFEMANGT--RHLIYTRSLREN-NIPTIASRWLQRL 719 + F + + P S ++ + Sbjct: 623 FEEERLLFYFLLNAAQERIYLLYERSDEAGKPKTPSHYIMDI 664 >gi|191168614|ref|ZP_03030397.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B7A] gi|190901360|gb|EDV61126.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B7A] Length = 1122 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVMPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--NLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|168236046|ref|ZP_02661104.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737570|ref|YP_002115945.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713072|gb|ACF92293.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290752|gb|EDY30106.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1123 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKSVEGLGEAQNWQALLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLSFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|26249251|ref|NP_755291.1| exonuclease V subunit gamma [Escherichia coli CFT073] gi|227888385|ref|ZP_04006190.1| exodeoxyribonuclease V [Escherichia coli 83972] gi|301049386|ref|ZP_07196350.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 185-1] gi|26109658|gb|AAN81861.1|AE016765_263 Exodeoxyribonuclease V gamma chain [Escherichia coli CFT073] gi|227834654|gb|EEJ45120.1| exodeoxyribonuclease V [Escherichia coli 83972] gi|300298828|gb|EFJ55213.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 185-1] gi|307554815|gb|ADN47590.1| exodeoxyribonuclease V gamma chain [Escherichia coli ABU 83972] gi|315293806|gb|EFU53158.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 153-1] Length = 1122 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|194426379|ref|ZP_03058934.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B171] gi|194415687|gb|EDX31954.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli B171] Length = 1122 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 118/1086 (10%), Positives = 261/1086 (24%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANI--DFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + F L P S + +L+ + L L L+ Sbjct: 64 LPASFIWDMFVRVLPEI----PKESAFNKQSMSWKLMTLLPQLLVREDFTLL-RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D H +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCHEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 1147 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 87/837 (10%), Positives = 196/837 (23%), Gaps = 78/837 (9%) Query: 150 KNLADIIDIIETEEKKWEDLHAL----KNEKYGMWWL---LAADFLKIASKYWTERLVEL 202 + D + +E EE LH L W L +A E Sbjct: 327 RAFLDFLARLEGEEALRCALHDLRFLPSASYTATQWQLMEALFQLLPLAVAQLQLAFQER 386 Query: 203 NASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAGSTGSIPATARLMSTV---AN 251 + A E +++ + + L+ + Sbjct: 387 GEVDFTEVAQRAVAALGEAEAPTDLALALDYQIRHLLMDEFQDTSLSQYILLERLTIGWE 446 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G +L D + L L + + Sbjct: 447 AGEGRTLLVVGDPMQSIYRFREAEVGLYLQAWRQGIG------QLPLTPLTLSVNFRSQQ 500 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + N + I + T + + E D+ E Sbjct: 501 ---GIVNWVNQSFRQILPAAQEIATGAVPYSQSHAFHPLLAAPAVQVHPFFEKDSLTEAE 557 Query: 372 ISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 + + + A++ R + L G+ PL + L Sbjct: 558 RVVHLIQQTRQATPNSTIAILVRSRGHLAGIVPLLREAGLGFRALEIEPLGSRPVVQDLL 617 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 +L A+F L D ++ T+++ P + Y+ ++ + R + D Sbjct: 618 ALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAIWDRIQE------DACIQ 671 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 L ++ + L E + V+ + + + ++ + Sbjct: 672 RLSEEGRERLGRLRQVFAKALEERRRTSPRRQVEGVWLALGGPACVADSIALEEASVYLD 731 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 V + L+ + + +L I ++ + + + Sbjct: 732 LLEGEAVADEILDFRALEESVARLFAPPDREADETLQIMTIHRAKGLEFDTVIVPGLGCP 791 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + T + LL +GG + ++ Sbjct: 792 PRHESHQLLLWAERPTAHYSAGNKGALLLAPITGVGGSQDSIYQHIKR------------ 839 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 L + + +H + ++ + +L Sbjct: 840 --LHEEKGEFENGRLLYVAVTRAKHRL------HLLGQVELDDTGKKTKMPSKRSLLASL 891 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + + L T+ P+ S P + R+ Sbjct: 892 WPAVKEKFEAAALLQRETEIREEGTDLADSPISGFISRLS-----TQWQCPAPMAGVRVD 946 Query: 792 ---------KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 LD I GT+ H + + ++ + + Sbjct: 947 IGDLPEVAPALDSIEFDWAGETARHIGTVVHRYLQIIAEEGPEHWGLTRIMALAPALRQA 1006 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLT 899 ++ + ++ LE+ S+ + + + Sbjct: 1007 LRQQGVVADEMENAMERAREVLGQTLENPRGRWILASNHRQARNEYALSGVLNGR--IIR 1064 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKE------TAQKLIDPQLSLEAAALKAGSFS 950 DR + ++G I DYKTG + + Q+ QL AA + + Sbjct: 1065 AVIDRTFIDEAGVRWIVDYKTGTHEGGDREEFLNREQERYHAQLERYAALMALKAPE 1121 >gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] Length = 1188 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 97/814 (11%), Positives = 217/814 (26%), Gaps = 80/814 (9%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233 A ++ + E + + + I++ Sbjct: 365 RAALVLADRLNRDYEELKKRRSQLDFEDLITRTADLLTKKDVGPWIHYKLDQGIDHILVD 424 Query: 234 GSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTITEKSTNIT--- 282 + + P ++ ++A + D + + + Sbjct: 425 EAQDTSPIQWSVIQSLAEDFFSGESARQTLRTIFAVGDEKQSIYSFQGARPERFSEESDR 484 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK----SFLPPDTSD 338 + ++ Q+S +L + + + +V + + Sbjct: 485 TRRRVATSGQQFSSIRLPLSFRSTADVLAAVDHVFTAPENARGLSAVDEPVVHRSSRIGH 544 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNER-EEAISIAIALRMS---------------- 381 D+ E P D A +A + + Sbjct: 545 PGAVDLWEMIAPEPAAKEEDWTAPFDSTPESAPAAILARRMAQTIGNLIGRETIIEKGKA 604 Query: 382 -LDENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 E L+ + + L R I + + + L++ + L +L + Sbjct: 605 RFIEAGDILVLVRKRDSFVNALTRALKRRNNIPVAGADRLVLTSHIAIQDLLALGRFLLL 664 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 D ++++ L+K PL G + + A + + D D + Sbjct: 665 PEDDLSLSALLKSPLFDLGEDDVFAVAALRGSDESVWNHLQKFAD--DGNERFRHAVDRL 722 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 K + S + L Q + L T ++ ++ T Sbjct: 723 KTFLALSKSLSVHDFYARVLGSFGGRR--QFLARLGTEVSDILDEFLTFTLDHETSGLPG 780 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 V E +++G+ + + ++A + +D G Sbjct: 781 LQSFVSTLELEAPTVKREQDKGRNEVRIM--TVHASKGLEAPIVFLVD-------GGGKA 831 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLKT 676 + ++ T + + + + L + +TA+ L+ L + Sbjct: 832 FTHTHLPKMRLIETGKQDIPLPVWVPVSALANSLTQADTARLQSLTEEEYRRLLYVGMTR 891 Query: 677 AEKYIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 A + + N T H + + +LR++ + G + + +R Sbjct: 892 AADRLIICGYRGIRENADTWHAMISAALRQDGERCTPVSFSGPDGEWQGLSWRVSQVERS 951 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 ++ +P PP PR S S +I+D A +L Sbjct: 952 FERMEQAETTVD-RGALPAGLSRPLPPQRNLPRPLSPSGAGTVIDD----EADNLLVTSP 1006 Query: 796 IPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 + K DR+ ++G H ++ L + + P Sbjct: 1007 LFTEKAKSDRSLEKGRFIHRMLQTLPEIASADRAEAARRYAE-------RAARFWPQA-- 1057 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGF 912 R + L H E + + ++ ++G DR+ +L Sbjct: 1058 -ERDALIGSVMALLSHPELQGVFSAHAQAEVSIMGTLTLDDQAYAVSGRIDRLTVLDD-R 1115 Query: 913 VDITDYKTGDNPKKETAQKLID--PQLSLEAAAL 944 V I DYKT P + Q QL++ L Sbjct: 1116 VVILDYKTNRVPPRSAEQIPFAHRAQLAIYREIL 1149 >gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] Length = 1125 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 94/846 (11%), Positives = 224/846 (26%), Gaps = 110/846 (13%) Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L + D++ +E L A + A FL+I + ++ L+ Sbjct: 302 LFDLMPQVDDLMRRVEDARDARLALRAAQKTHVLH--QFAHRFLEIYAHE-KQKRGWLDF 358 Query: 205 SSPVGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA--------- 250 + AL+ A + + G I++ + + P ++ +A Sbjct: 359 DDLILKARALLTNPAVAAWVLYRIDGGIDHILVDEAQDTSPRQWDVIERLADEFYSGDGA 418 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKRE 308 + D + + + + Q + L++ Sbjct: 419 REEEDRTLFVVGDKKQSIYSFQGADPREFDHKQDLFEQKITQAGQIFQRRSLEYSFRSSS 478 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR-----NTDILENKIPNIQKCFSDVALIE 363 + +L + + + + + + S + + + P+ ++ V Sbjct: 479 AILQLVDTTLAPHTDAGFQADAAHKAFKSALPGRVDLWPVVEKTDEPDDREWSDPVDQKS 538 Query: 364 ADNERE-EAISIAIALRMSLD--------------------ENKKKSALITADRNLARRV 402 A + A +A ++ ++ L+ +L + Sbjct: 539 AHHHTVVLADQVASQIKELIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSDLFSEI 598 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + I + + + L L +LL+ + D +++AT +K PL + Sbjct: 599 IRACKTADVPIAGADRLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQML 658 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + + S D +L + Q + R+ L Sbjct: 659 FTLSHYRKEDHLWQALR--SSDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKL 716 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + + + S +W + + Sbjct: 717 LARLGSEAEDGINAMLSQALSYER------------------GAIPSLTGFLVWMQTDDL 758 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + + + ++ ++ +P + + + I T +L D Sbjct: 759 EIKRQIDNASDQVRVMTVHGAKGLEAPIVILPDTGKRPLVIRDEIIKIGDTPVWKLSEGD 818 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + M+ L+ + A + + + + + Sbjct: 819 ---------------------MPAAMRGALDDRKAREMAERLRLLYVAMTRAEKWLIVAA 857 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 +P + W Q + G + G D+ PK Sbjct: 858 A--GELPKDGNSWYQMVGAAMGQAGAKPVGSSGGM---RFEHGDWDALPVIDTAPKTHTT 912 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 +P + L A K + + G L H ++ L Sbjct: 913 PVLEPVFNTPLTNIPLRAKTLAPSDLGGAKALPGDDGQSEDAAKSYGNLVHKMLETLPMM 972 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 ++ + H + Q D + L I ++ + + Sbjct: 973 HSDRWNG-VLHTLAQGYDETVAQAALREAIAVLDTSELAHV-------------FGKDAL 1018 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940 +P + + L G DR+ L+ V + DYKT + + + Q+ Sbjct: 1019 AEVPITAPLGTE--RLHGTIDRL-LVSDTDVLLVDYKTNRVVPDTPDRCPEGLLRQMGAY 1075 Query: 941 AAALKA 946 AAAL Sbjct: 1076 AAALAQ 1081 >gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110] gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110] Length = 1099 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 115/909 (12%), Positives = 241/909 (26%), Gaps = 76/909 (8%) Query: 66 EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL-ILIWRNKLP 124 + P I +L + A P+ +RL ELA L K Sbjct: 226 DHVDVPPEADPDIVALEALASHFDGAFT--------PLPGFERLWELAHPPHLPIMRKDA 277 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET-EEKKWEDLHALKNEKYGMWWLL 183 ++ D S A+ LA + T + + Sbjct: 278 SVLLDYRRRSLWRKVAGKADGDRLADQAEEHYARCRTAYGALMGRIATAIIGSFSNELDG 337 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMR--AEAEHLMKGTKGPIIIAGSTGSIPA 241 + + L+ + ++R + I++ + P Sbjct: 338 VLAD----YEAFKRSAAVLDFDDLLYTCRQVLRDFPIVRNTAGERFSRILVDEFQDTDPL 393 Query: 242 TARLMSTVANHPNGAIVLPG-----LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 A ++ + + A + I ++ T + Sbjct: 394 QAEIIFLLCSDAADAAAWHTKALRPGQLFVVGDPKQAIYRFRGADLATYLTVRQSIERQF 453 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + + + NE + + ++ + +D + I Sbjct: 454 PGNIVKVSANFRSRDPILRHVNECFSEHLSQQQAGYVALHATRGASDNALPGVAKISVEL 513 Query: 357 SDVALIEADNEREEAISIAIALRM-------------SLDENKKKSALITADRNLARRVK 403 + A EEA +A + AL+ R + Sbjct: 514 PPETNV-ASARDEEARVVAEVCARLIGNVELKLNDGRARRLTPGDIALLAPVSTDLWRYE 572 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L GI AG L + L +L+ A+ D +A+ L++ PL E+ Sbjct: 573 RALEEAGIPFASQAGKNLFKRQEAQDLVALVRALADPRDTLALGALLRGPLVG--LTERE 630 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L + L I+ + V A + + + Sbjct: 631 LLDITSDLPPSEDPDQIAGLTILTDPATVHHDTAREVLGILGDLRRRVNGTSPAMILAEA 690 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 ++ + + +V ++ + +I + + + R + W Sbjct: 691 IERLR--VRSIVAARSADQAVRSLANIDGFLERARSYRVRGFARFARDIDEEW------- 741 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 S ++A ++ + I+ TV + I S +T Sbjct: 742 ------------SDGSSSAEGMVEADGQSIEIVTVHSSKGLEWPVVIPINRASMPRRSET 789 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + +E + A + + L + AEK + + Sbjct: 790 FVYRRSDESLH---WALGKIIPPSLADALLTEEAEKRAENLRLLYVACTRAMESLIIPDF 846 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 +N + L + R + + + + +R + Sbjct: 847 SWSNDDS--WAKLLSFRSDTIPQLDISGFPRARVSPSSAAENLQSAEIFAEERARLEAAP 904 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + + T S +I + A A L + RG L H ++ EL+ Sbjct: 905 KVRWITPSE-GDPDVITEQLAWEAGDDEPLRARTTVEGG---RIRGILLHKLMEELVTGE 960 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + +++ + Q+ D F ++ P + L + E K + Sbjct: 961 LVESSEDAASRAAQLRDQLF---SVSPSTTVDAEELAATALKTIRLPELK--PFRSGLMA 1015 Query: 884 NIPAK-MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS--LE 940 +P +A + G AD I + G D+K+ PK + QL+ L Sbjct: 1016 EVPIHAVAAAGADHLIVGRADAIARTEDGDTVAFDWKSDAAPKDTD-RSAYRQQLAQYLY 1074 Query: 941 AAALKAGSF 949 A + G+ Sbjct: 1075 AIGARKGAV 1083 >gi|193071409|ref|ZP_03052324.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E110019] gi|192955271|gb|EDV85759.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli E110019] Length = 1122 Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats. Identities = 113/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|301027505|ref|ZP_07190842.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 69-1] gi|300395013|gb|EFJ78551.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 69-1] Length = 1122 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 113/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + + + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|57234561|ref|YP_181362.1| hypothetical protein DET0620 [Dehalococcoides ethenogenes 195] gi|57225009|gb|AAW40066.1| conserved domain protein [Dehalococcoides ethenogenes 195] Length = 379 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 87/265 (32%), Gaps = 34/265 (12%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S+S+I Q + P I L GT H+ + Sbjct: 1 MRPLSYSQIDQYQSCPLKYRFLYIDGLKPP-----AKGYFSFGTTLHDCAEYFFR-VKVP 54 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVNI 885 P + +LM+ + + +R L KI F + + V Sbjct: 55 PPPSLENLMEYYCLHWRSEGYESAEAEENYRQLGGKILADF---HRIHSADFHMPLAVEH 111 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL 944 + ++ G+ LTG DR+D L SG + I DYK+ E Q + QLSL A+ Sbjct: 112 QYTVNLD--GVKLTGKIDRVDKLPSGELCIIDYKSNKDLFSAEYVQN--NLQLSLYQLAV 167 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + F V L L+ + + + A L + + + + + Sbjct: 168 EQIWF-----LPVGELCLYHLRSNTAMRCPARSKEVIADARNLVLEVAEKIEKAI----- 217 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028 F + E S ++ HL Sbjct: 218 ----FPA----CENSFCPCDFAHLC 234 >gi|91212217|ref|YP_542203.1| exonuclease V subunit gamma [Escherichia coli UTI89] gi|117625075|ref|YP_854063.1| exonuclease V subunit gamma [Escherichia coli APEC O1] gi|218559834|ref|YP_002392747.1| exonuclease V subunit gamma [Escherichia coli S88] gi|237706517|ref|ZP_04536998.1| exonuclease V subunit gamma [Escherichia sp. 3_2_53FAA] gi|91073791|gb|ABE08672.1| exodeoxyribonuclease V gamma chain [Escherichia coli UTI89] gi|115514199|gb|ABJ02274.1| exodeoxyribonuclease V gamma chain [Escherichia coli APEC O1] gi|218366603|emb|CAR04357.1| exonuclease V (RecBCD complex), gamma chain [Escherichia coli S88] gi|222034536|emb|CAP77278.1| exodeoxyribonuclease V gamma chain [Escherichia coli LF82] gi|226899557|gb|EEH85816.1| exonuclease V subunit gamma [Escherichia sp. 3_2_53FAA] gi|294491965|gb|ADE90721.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli IHE3034] gi|307625586|gb|ADN69890.1| exonuclease V subunit gamma [Escherichia coli UM146] gi|312947373|gb|ADR28200.1| exonuclease V subunit gamma [Escherichia coli O83:H1 str. NRG 857C] gi|315289390|gb|EFU48785.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 110-3] gi|323951720|gb|EGB47595.1| exodeoxyribonuclease V [Escherichia coli H252] gi|323957438|gb|EGB53160.1| exodeoxyribonuclease V [Escherichia coli H263] Length = 1122 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 112/1086 (10%), Positives = 257/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ S+ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIISEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773 + + L ++ + + F+ Sbjct: 771 ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 774 -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As] Length = 781 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 73/700 (10%), Positives = 166/700 (23%), Gaps = 86/700 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 A + T +A +E+ + + I + + A L Sbjct: 53 AGILAVTFTNKAAKEMMARLSAQLPIPVRGM-WIGTFHGLCNRFLRAH-WREAGLPQTFQ 110 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + +LA + + + D + + I+ + + Sbjct: 111 ILDIQDQLASIKRLLKALNVDDERHPPKQVQW------------------FINGAKDQGL 152 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + D+ A + L + + + + ++ Sbjct: 153 RPGDVEARDPQS---------RQLAEIYLAYEAQCTRDGVADFAELLLRSYEILRDNAAI 203 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIWNTITEK 277 + I++ + + + +A GA V D + Sbjct: 204 RSHYRQRFRHILVDEFQDTNRLQYQWLKQLAGPEDAQGACVFAVGDDDQSIYAFRGAHAG 263 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + L L+ + + +N + + Sbjct: 264 NMDDYQREFRV---------RHLIKLERNYRSHGHILDSANTLIANNA------------ 302 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395 L + V + EA ++ EA + +R L E + A++ Sbjct: 303 -----RRLGKNLRTEAGAGEPVRVFEAPSDYAEAQWLIEEIRQLLREGLVHSEIAVLYRA 357 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 L+R ++ L G+ + G+ + L + D A +V P Sbjct: 358 NALSRVIEGALFNAGLPYRVYGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPAR 417 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + L L ++ SL + Sbjct: 418 GIGARTLEQLQDAARLRATPLSEAVDALGGRGAASLQAFLDLVAQMRFQT---------- 467 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 A+ L + + + + G + + +L V + Sbjct: 468 ---AAISLPELVRHVLEASGLNAHYREEREGQERLENLEELVNAAAAFVTQEGFGLQATA 524 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + F+ +T + ++ Sbjct: 525 QQRQALGAAPDSFAATDGIDPATGETLSPLTAFLTHAALEAGDNQAQNGQDAIQMMTVHA 584 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L FD + + GL EG++P A + + L + + Sbjct: 585 AKGLEFDAVFITGLEEGLFPHENALSETDGVEEERRLMYVAITRARKRLYLSLAQ----- 639 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 TR L + SR+ L L G Sbjct: 640 ----TRMLHGQTRYNLRSRFFDELPAESLKWLSAKLPGFG 675 >gi|114331346|ref|YP_747568.1| exodeoxyribonuclease V, gamma subunit [Nitrosomonas eutropha C91] gi|114308360|gb|ABI59603.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Nitrosomonas eutropha C91] Length = 1188 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 95/870 (10%), Positives = 203/870 (23%), Gaps = 116/870 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI----EITGKKSTILPIIKS 80 LL LV F+ L+P L I V + Q L+ + G I + Sbjct: 22 LLRQLLVHWFKAHSLDP--LEDEIILVQSNGIAQWLKLALAANTTDTPGSGCGIAAALDM 79 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L +L + P +S + L + RL+ + + +P + L Sbjct: 80 LLPARFIWRVYRAVLGPDAVPDISPFDKPLLIWRLMRLLPDVIPLPGYEPLARF-LEQDS 138 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHA-----------LKNEKYGMW-WLLAADFL 188 LA+ +AD+ D + W A + W Sbjct: 139 DLRKRYQLAEKIADLFDQYQVYRADWLAAWARGEHVLYNTHHIARPLDATHCWQAML--- 195 Query: 189 KIASKYWTERLVELNASSPVGY---QIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATA 243 W L ++ +S + A + + + + G + + Sbjct: 196 ------WRALLEDVGVASQSSRAVVHQRFLDAAKKLKNRPDGLPRRVSVFGLSSLPRQSL 249 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-------TYSTHPQYSL 296 ++ ++ + + H + + Sbjct: 250 EVLLAISPVTQILLCVHNPCEHYWANLLSEKDHARRTSNRHAHKNNTPATITEDALHLYA 309 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-------------- 342 LL + D L + +E + D Sbjct: 310 HPLLAAWGKQGRDYIALLDELDEPDAYRARFEQVGERIDLFQSHGESTLLNQLQDDIRLL 369 Query: 343 ---DILENKIPNIQKCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITA 394 D + P I + A + + E + L + + + ++ Sbjct: 370 RTVDESRDTWPAIDPASDRSIRFHRAHSVQREVEILHDQLLAAFNADATLRPRDVIVMVP 429 Query: 395 DRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 D N + I ++ L LL+ + Sbjct: 430 DVNAYAPYIEAVFGQVEHSDARYIPFSMADLTQRQQAPLIFALEFLLDVPESRLTVSDLL 489 Query: 448 TLVKHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN- 501 L+ P + F L + + ++ + K Sbjct: 490 DLLNVPAVRQCFGIGINDLPRLHQWIRQTNIRWGLSARHRAKFIQESLEQNTWAQGLKRM 549 Query: 502 --------NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISD 552 + S E L + ++ L+ +T + + + Sbjct: 550 LLGYAVGCDPTGREDYSWRDIEPYGEVSGLEAALTGSLSRLLIQLETLTETFAEPATPAI 609 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W + LQ E + L + +L + + Sbjct: 610 WGQRLQFLLQGFFKSETAEDTAL-LLQLQTSLHAWLEACTAASFTEMIPLAVIREHWLAQ 668 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ID + + L + R + F + L G+N+G +P+ F Sbjct: 669 IDQPNLAQRFMAGE-LTFATLMPMRAIPFRMVCLLGMNDGEFPRTHPPVDFDLMARDIRP 727 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730 ++ + + + L + + +N S + +L + Sbjct: 728 GDRSRREDDRYL-FLEALLSAREKLHISWVGKSILDNSDLPPSVLVSQLRDHIAACWQLA 786 Query: 731 LKKRGQCYLDW--------------------------TRKLDYTTKQPHYKRP-KPFPPL 763 R+ + P +P L Sbjct: 787 DSPDNDLLAALTVEHKLQAFSQDYFDKDPATSALFTYAREWERKLISPAAPAATEPSLSL 846 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKL 793 S ++ + DP + R L + Sbjct: 847 PVFNSPVSLGQLIAFLKDPVKTFCRERLGI 876 >gi|260869501|ref|YP_003235903.1| exonuclease V, gamma chain, RecC [Escherichia coli O111:H- str. 11128] gi|257765857|dbj|BAI37352.1| exonuclease V, gamma chain, RecC [Escherichia coli O111:H- str. 11128] gi|323180258|gb|EFZ65810.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli 1180] Length = 1122 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + + Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSVEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|253988070|ref|YP_003039426.1| exonuclease V subunit gamma [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779520|emb|CAQ82681.1| exodeoxyribonuclease v gamma chain [Photorhabdus asymbiotica] Length = 1124 Score = 111 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 83/753 (11%), Positives = 185/753 (24%), Gaps = 75/753 (9%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 L+ F D P I V + Q L+ + E G + I L Sbjct: 14 KELIAIFIGDHPLPDPFEQEVILVQSPGMSQWLQIQLAERIGISANIS---FPLPATFIW 70 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 +L S +L L+ L + + L + Sbjct: 71 DMFTKVLSDIPKESAFSKDAMTWKLMALLPQ----LLPEAEFVALRHYLDQDLDKRKIHQ 126 Query: 148 LAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVEL 202 LA +AD+ D W+ + W L + + Sbjct: 127 LAGRVADLFDQYLVYRPQWLESWQQGQLIDGLSDNQLWQKRLWLELTEYTHQLQQPKWHR 186 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 I+ + A+ + I G + P + + + H + ++ Sbjct: 187 ANLYQ--RFISTLENSADFSACCLPKRVFICGISALPPVYLQALQALGRHIDIHLMFTNP 244 Query: 263 DCHIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + I + + + Q LL Sbjct: 245 CQYYWGDIQNYSFLAKMSNRKPRHYKSERELEYFKDPGNAQSLFNDEGEQDVSNPLLASW 304 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP------------- 350 D L + + + R+ LE+ Sbjct: 305 GRLGRDNLYLLSQLEQSSDVHAFVELEPDNVLHQLQRDLLYLEDHAQIGSTKEAFENSLK 364 Query: 351 --NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL 404 + ++ + + E + L L++N + ++ AD + Sbjct: 365 KRLLNPLDRSLSFHVCHSPQREVEVLQDQLLRLLEDNPSLTPRDIIVMVADIDSYTPYVQ 424 Query: 405 EL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 + I IS + +LL+ + L++ P F Sbjct: 425 AVFGNASAERYIPFAISDRKARQAHSILQVFITLLDLPQSRFTTEQVLALLEVPALANKF 484 Query: 460 P--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQS 510 E L + ++ +R + ++ +L + Sbjct: 485 GIHEDGLRLLRRWVDESGIRWGLDDDNVEELSLPVTGQHTWRFGLTRMLLGYAMDSRSGP 544 Query: 511 RLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + + L + + L+ + + ++ DW + L+ + Sbjct: 545 WKDVLPYDNSSGLAAELAGQLAEFLMQLSYWRKILSESQTLGDWLPVCQQLLEAFFASDS 604 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 L E + + + + D + D E + + ++ Sbjct: 605 ETELVLAMIE--QQWQRVIGNGLNACYQESVPLVLLRDELALRFDNEKISQRFLAG-SVN 661 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + R + F + L G+N+G++P++ F +M ++ E Sbjct: 662 FCTLMPMRSIPFKVVCLLGMNDGIYPRSIPPLGF--DLMAEKSQRGDRKRRDDDRYLFLE 719 Query: 690 MANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719 L + + +N S + L Sbjct: 720 ALISAEQFLYISYIGKSIRDNTECNPSVLVNEL 752 >gi|260856934|ref|YP_003230825.1| exonuclease V, gamma chain, RecC [Escherichia coli O26:H11 str. 11368] gi|257755583|dbj|BAI27085.1| exonuclease V, gamma chain, RecC [Escherichia coli O26:H11 str. 11368] gi|323154798|gb|EFZ40992.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli EPECa14] Length = 1122 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + + Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSVEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPDDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWTHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|120552956|ref|YP_957307.1| exodeoxyribonuclease V, gamma subunit [Marinobacter aquaeolei VT8] gi|120322805|gb|ABM17120.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Marinobacter aquaeolei VT8] Length = 1197 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 90/959 (9%), Positives = 232/959 (24%), Gaps = 100/959 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI-----TGKKSTILPIIKS 80 L +V R +P+ P L S T V + Q L+ E I + Sbjct: 22 LRRAVVYICRQNPMPP--LQSETFLVQSNGIAQWLKLALAEKRTEDGVEGGLGIAAGMDF 79 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L +L P S + + RL + + L Sbjct: 80 LFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPELVGQDEAFTPLARFLDGRD 139 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTE 197 + LA+ +AD+ D + W + W + Sbjct: 140 TDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVVITARGEEKALDTEACWQPLLWRK 199 Query: 198 RLVELNASSPVGYQIALMRAEAEHL-------MKGTKGPIIIAGSTGSIPATARLMSTVA 250 + ++ + + R A+ I++ G + + ++ Sbjct: 200 LVEDVGSEAHTSRSQIHTRFMAQGQHISEPANASRLPKRIVVFGVSSLPRQALEALYVLS 259 Query: 251 NHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + + ++ + H Q++ L Sbjct: 260 RFSQVVLCVHNPCQFYWADIISDRELLKAERKRGAAHPVLSQIDDPDQLH-QHANPLLAA 318 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------MRNTDILENKIPNI 352 + R+ ++ L N R+ + +D + + + + Sbjct: 319 WGKQGRDYIRLLDEFDNPDDYRASFQTPGQKIDIFTDHGDVDNPCLLHQLQNDIHNLTPL 378 Query: 353 QK-----------CFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRN 397 Q+ V +A + E + L + + + ++ D N Sbjct: 379 QEIRQQQRTVDLTRDHSVVFHDAHGPQREVEILHDQLLAAFNADPTLRPRDVIVMVPDIN 438 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + + I IS L +L++ I +L+ Sbjct: 439 VYAPHIQAVFGRYSPGRKRHIPFTISDQGQRHHEPVLIALETLMSLPRSRFGVSEIISLL 498 Query: 451 KHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKN 501 + + F E + A+ +E +R + L ++ + Sbjct: 499 EVAGIRDRFDISEDDIPLARRWVEGANIRWGLHGKHRESLDLPAELERNTWQAGLRAMLL 558 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + Q E L + + + + + + +W L Sbjct: 559 GYGMGDDQPWGGVEPYGEIGGLQASLAGRLGEFVHQLEALWQALQATRTPGEWEALFSAM 618 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L+ + L + L + D++ + +D + Sbjct: 619 LEQFFHKVEGQDLLLLNRFRRQLEQWLDDALAAGLEQQPLPLNIVKDVLLQGLDEGGLNQ 678 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + R + F + L G+N+G +P++ F ++ + Sbjct: 679 RFLAG-KVNFATLMPMRAIPFRKVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRRED 737 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + + L + R ++ S + +L + + + G Sbjct: 738 DRYL-FLEALLSAREQLYISWVGRSIRDDSERPPSVLISQLQDHLNSLWKVAGQPDGSVT 796 Query: 739 LDWTRK----------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 T + T + +P P + F+ ++ + Sbjct: 797 KALTTQHPLQPFSRDYFPRTNGVGDGEETQPKPLADVLQARGLFTYEREWRSAHAVDNPE 856 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK------------ 836 + + ++ T+ I ++R+ + Sbjct: 857 QSREALPYQTPEEPISLTELANFLKKPIDTFYQRRLQVRFEAVEEDDTDNENFDLNGLDR 916 Query: 837 -QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 ++ + + + + + + + + Sbjct: 917 WRLDNELIHEGVVKAASEEELHERLEATLDR-----MARRGDLGMGVTEHRLRTELAGR 970 >gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] Length = 1195 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 95/829 (11%), Positives = 209/829 (25%), Gaps = 97/829 (11%) Query: 185 ADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHL----MKGTKGPIIIAGST 236 F++ + + ++ A L RA+A + +++ + Sbjct: 356 LTFIQAIAARYERSKRQVGALDFDDLIARAADLLTRADARAWVLYKLDLGIDHVLVDEAQ 415 Query: 237 GSIPATARLMSTVAN---HPNGA-----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + P +++S + GA V D + +S + Sbjct: 416 DTSPRQWQVISALVEEFFAGQGARNTNRTVFAVGDEKQSIYSFQGARPESFDTHRRLFER 475 Query: 289 ST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 ++ + S D LD K N+ G + + Sbjct: 476 ASKNAGGTFENANLNLSFRSTADVLDAVDAVFKVPQNMPGVTQGEGTIHDAARSKGAGQV 535 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD-----------ENKK 387 I K + S A +E+ A+ +A ++ + + Sbjct: 536 DVWPLISAEKAEESEDWTSQQEATIAASEK-LALQVAGTIKSWIGNEPLGPNGRAMQAGD 594 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 L+ + + EL + + S + ++ + L +L + D +A+A Sbjct: 595 ILVLVRSRDAFVTALNRELKSLEVEVAGSDRLTITDHIAVEDLMALAQVMLTPQDDLALA 654 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+K PL + Y +E +R + L + D++ K Sbjct: 655 GLLKSPLIGLDEDDLYKLARSR-MEGAVMRDRSVREHNVSLFQGLRDQLDEPKFAAAWNT 713 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + D IL + ++ + + Sbjct: 714 IKGWRRRADILPVYEFFALILGADGGRRKFMARLGPEVEDV----LDAFASATMDHESRG 769 Query: 568 EHRKLPNLWFEEEGK-TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK-- 624 L + + + E + +A + ++ + ++ K + Sbjct: 770 LPGLQNFLERLSTEQPEIKRELDQRGEQVRIMTVHAAKGMEAPVVFVVDKSSKALPGQFY 829 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + N L + N+ + Sbjct: 830 PALYRWGDQESADNRNGGWLWVPKTNQHGTATTP------------AFEREHTGAENEYR 877 Query: 685 AHDFEMANGTRHLIYTRSL-RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY----- 738 + + + + +L G + +++ +G Sbjct: 878 RLLYVAMTRAEDRLILCGTCGVSGPDKVPEPSWYNMLERGLEGTWRDVEAQGAVPQHHRW 937 Query: 739 ------------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 T K +P + P+ S S LI D Sbjct: 938 YSHDRAEREGDNPAQTDKQVVDVTPLPATMLQPMERAKDLPKPLSPSGATALI-DEGRTE 996 Query: 787 ARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI---I 839 R + L P GT H I N P ++ Q + Sbjct: 997 PRAVPSLLEPDAPSAAAYSSPSPRKLGTAVHRIFELWPVVAQNDRMPMGERILDQQLGNL 1056 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 D + ++ + + + V + + I +T Sbjct: 1057 DPAMSANIIYGVQQVVEDPRVADLFD----------PATSRAEVAVMGVLDIGGTQRSVT 1106 Query: 900 GFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 G DR+ + + V + D+KTG+ A QL+L A ++ Sbjct: 1107 GTIDRMAVTED-AVYLLDFKTGEHVPADAAAAPASYVTQLALYRAIVQR 1154 >gi|331664383|ref|ZP_08365289.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA143] gi|331058314|gb|EGI30295.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli TA143] Length = 1122 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 113/1084 (10%), Positives = 258/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W N + L A +T+ Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTDE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L +++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|82545123|ref|YP_409070.1| exonuclease V subunit gamma [Shigella boydii Sb227] gi|81246534|gb|ABB67242.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella boydii Sb227] gi|320185294|gb|EFW60069.1| exonuclease V subunit gamma [Shigella flexneri CDC 796-83] gi|332092015|gb|EGI97093.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii 3594-74] Length = 1122 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 116/1087 (10%), Positives = 254/1087 (23%), Gaps = 167/1087 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ L + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P+ F L + G + D +++ L L + Sbjct: 476 VPVLAARFDITEEGLRYLRLWVNES-GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLG 534 Query: 512 LSEEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + E E + L+ + + + L+ + + +W + Sbjct: 535 YAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDM 594 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L L + + ++ ++ + D + + +D E + Sbjct: 595 LNAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQ 652 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 653 RFLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRR 709 Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF---------- 727 E + L + +N S +Q L+ G Sbjct: 710 DDDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNC 769 Query: 728 --------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 + G+ L ++ P P Sbjct: 770 DESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLP 829 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRI 824 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 830 ETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALV 889 Query: 825 NKNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 ++ E + D +++ + Q Sbjct: 890 EQDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------ 938 Query: 884 NIPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLS 938 ++ + G+ +TG G P + + QL Sbjct: 939 -QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLW 981 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 LE A + D + +E++L L +++ Sbjct: 982 LEHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024 Query: 999 TLLQNGE 1005 + G Sbjct: 1025 EGYREGM 1031 >gi|332288982|ref|YP_004419834.1| exonuclease V subunit gamma [Gallibacterium anatis UMN179] gi|330431878|gb|AEC16937.1| exonuclease V subunit gamma [Gallibacterium anatis UMN179] Length = 1104 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 89/948 (9%), Positives = 244/948 (25%), Gaps = 88/948 (9%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 L+ A I V + Q L+ + E + + Sbjct: 13 QKHLLVRLLEVQPLQDPFAENVILVQSPGMAQWLQLQLAEHFSIAANFA---FPMPSSFI 69 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 K + + P + + L R+I L + L Sbjct: 70 WKLYKQNIAEISEQNPFNKSAMVWRLMRIIP----TLLHLPAFSRLNDYLGSAPEQNKLF 125 Query: 147 WLAKNLADIIDIIETEE---------KKWEDLHALKNEKYGMWWLLAAD----FLKIASK 193 +LA+ +AD+ D W+ + ++ + AD + Sbjct: 126 YLAEKIADLFDQYLVYRPEWINQWQTADWQQMTTSFVQQLSPRFKPIADNIMNDISWQVL 185 Query: 194 YWTERLVELNASSPV---GYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245 W + ++ P ++ L + E L K II+ G + P + Sbjct: 186 LWQALVADIQQHYPEQQIWHRANLYQTFLEQLQQGYCPKNLPTRIIVFGISAMPPMFLSI 245 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY------SLAKL 299 +S ++ + + + + + + + + Y L Sbjct: 246 LSALSQYIDIHLFFNSPSRYYWGDLIDHRYLEKLKQKIQTESKEMQTPYDETLAVGNPLL 305 Query: 300 LDFLDIKREDVKRLGNVSNEMYGR-SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 + + R+ + +L + + L + + I Q+ + Sbjct: 306 ASWGKLGRDFLYQLTQLEPNDIEVYNAPEGGQLLQQLQRQILELTPTASAILQYQEGDNS 365 Query: 359 VALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-------T 407 + L + E + L +++ K ++ AD + + Sbjct: 366 ITLHVCHSPMREVEVLRDNLLAMFEQDPTLTPKDIVVMVADIDRYTPYIQAVFSQYQEED 425 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLS 465 + I IS + + + L + +++ P + F L Sbjct: 426 KRYIPFSISDRKVTESDVLIATFLQLFTLKESRFSSDIVLSILDVPAIRQCFEIDLGELQ 485 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV---PHWQSRLSEEDKELAVL 522 ++ + +R + YD + + + ++ + + Sbjct: 486 TIRDWVTQSGIRFGLDKYDQEPVPNYNAWQNGVERMLLGYALKSESGIWQDAIGFDYSEG 545 Query: 523 LVDHILQCITPLVTYKTNKNS-TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L + + NL +W + + + + + ++ Sbjct: 546 LQGKLAGKLAHFFHALQQWQQKASQNLMAEEWRIAILQLIDTLFNVGEQPIVIALLKQTV 605 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + + E + +++ + ++ + L L R + F Sbjct: 606 HQVIDIIN---EADYPQTIDTEIIGELLQQKLNEQD-NSLHFLLGKLNFCTLLPMRAIPF 661 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + L G+N+ +P+ N F Q+ ++ + + + + L + Sbjct: 662 KVICLLGMNDVDFPRQLPNNSFDLMQYQTQKGDRSRREDDCYL-FLEALLSARQKLYISY 720 Query: 702 SLRE--NNIPTIASRWLQRLLV-----------------------LGGTDFFDNLKKRGQ 736 +N S + +L +F Q Sbjct: 721 VGYSIVDNTEYEPSVLVNQLWDYMADHLSHPDDLKQLRFSYPMTVFSEHNFLAPHFSYAQ 780 Query: 737 CYLDWTRKLDYTT-KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 +L + + + P + +++Q + P + + L + Sbjct: 781 EWLPIAQAQQQQQHPLREFDQTLLQPENGSHQLIVELDDLQQFVIAPIKYFFEQRLGVY- 839 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + +++ ++ L +L ++ ++ + Sbjct: 840 LNENEQERVESEVFELTALAQYQLKQRLFENEPQNSTLEFEKAQREGMLPRAEFAFLQQE 899 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + ++ + + V ++ + L G D Sbjct: 900 ELEQSCDLLRQATAQYQQQAADSVMVDV----TFELDGQEVRLQGQID 943 >gi|320194959|gb|EFW69588.1| exonuclease V subunit gamma [Escherichia coli WV_060327] Length = 1122 Score = 111 bits (276), Expect = 8e-22, Method: Composition-based stats. Identities = 111/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSIIFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLSSLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF---------- 728 E + L + R +N S +Q L+ G + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS--- 773 + + L ++ + + F+ Sbjct: 771 ESEARVKAHLTCHHTRMPFDPQNYQPGNLQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 774 -----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDVEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter hamburgensis X14] Length = 1162 Score = 111 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 93/914 (10%), Positives = 215/914 (23%), Gaps = 98/914 (10%) Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + +RL E +I + L +S L + ++A ++D Sbjct: 270 IEQARRLREAHAMIGEAAQADRYLDVFLTGDSVLRKSFVTKKISDVRPDIAAMLDRESQR 329 Query: 163 EKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220 E AL + + E + + Sbjct: 330 VIALLERRRALTIRDRT---QSLLVIATAVAANYRREKQERGLLDYDDLIDKTLAMLDQT 386 Query: 221 ------HLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCH 265 + + ++I + + P ++ + A V D Sbjct: 387 SPGWVHYKLDRGVDHVLIDEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEK 446 Query: 266 IPTAIWNTITE-------------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR 312 + + S +L+ +D D Sbjct: 447 QSIFSFQGAAPREFDERRSKLERKFRDAELPFRKEDFIYSFRSGKTILESVDYVFRD-AA 505 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + + S + P D+ + + + + A+ +E + A Sbjct: 506 IYTSIHAVGAHPVHESLADAAPGVVDLWSLEERDARQQIEGWRAPFDAVSATSSEVKLAR 565 Query: 373 SIAIALR--------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 I ++ L+ N + L + GI + + Sbjct: 566 RIRNEVKTLIAQGTMTGHLGDRRPLRYGDILVLVRRRGNAFDAIIQALKQSGIPVAGADR 625 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + L+ + L +L +A+ D +A+A +K PL + + L Sbjct: 626 LKLTEHIAIIDLMNLADALLLPRDDLALAVALKSPLFGLDDDDLFAIAHNRKGSLR---- 681 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 +L A K + + E +L Sbjct: 682 ----------DALADHATANDKFRDAFERLKMCETRAAHESPFAFYAWLLGGDGGRRRIL 731 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 N ++ ++ +L +T + + + W + + + Sbjct: 732 RRLGH-EANDALDEFLELALTYERKAPASQQGFMA--WLRAADTDVKRDMEISRDEVRVM 788 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + ++ + P + L + + + G Sbjct: 789 TVHGAKGLEASVVFLADTVTSPADTERLNLIRMSRGNAPAHAAGVTVWAGRKAED----- 843 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + + AE + + + N + Sbjct: 844 ------PPDVVNARAAMIAETEHEYRRLLYVAMTRAADRLIVGGCKPGNRKDVREHAWYD 897 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L+ G +++ R +P P + Sbjct: 898 LIDKGLGKSGLAMREIETAAGTVKRFTRPGETEPDAAGPATPVAAAPIALPPWLHSMAAP 957 Query: 779 IND------PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 P ++ + RGTL H ++ L +++ Sbjct: 958 EAPAGPSLRPSDADDNAHHRIWPGESPDQRRRALLRGTLVHRLLQSLPDVPVDRRGDTAL 1017 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI- 891 + + E E ++ + + F + + V I ++ Sbjct: 1018 AYLGRNARDWSEAERDALAAQVLALIGDSQFAPVF--------TDGSRAEVAIAGRLTTR 1069 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSF 949 + ++G DR+ + + V I D+KT P A QL+L A L Sbjct: 1070 RGDPVLVSGQIDRLVVTRE-AVLIVDFKTNHAPPRNPADAPPAYVRQLALYRAVLARL-- 1126 Query: 950 SQIDCRKVANLFYI 963 V Sbjct: 1127 --YPELPVKAALLW 1138 >gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12] gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12] Length = 781 Score = 111 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 68/683 (9%), Positives = 165/683 (24%), Gaps = 79/683 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 A + T +A +E+ + + I + + A L Sbjct: 53 AGILAVTFTNKAAKEMMARLSAQLPIPVRGM-WIGTFHGLCNRFLRAH-WREAGLPQTFQ 110 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + +LA + + ++ D + + I+ + + Sbjct: 111 ILDIQDQLASIKRLLKSLNVDDERHPPKQVQW------------------FINGAKDQGL 152 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + D+ A + L + + + + ++ Sbjct: 153 RPGDVEARDPQS---------RQLAEIYLAYEAQCTRDGVADFAELMLRSYEILRDNAAI 203 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHP--NGAIVLPGLDCHIPTAIWNTITEK 277 + I++ + + + +A GA V D + Sbjct: 204 RSHYRQRFRHILVDEFQDTNRLQYQWLKLLAGPEDAQGACVFAVGDDDQSIYAFRGAHAG 263 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + L L+ + + +N + + Sbjct: 264 NMDDYQREFRV---------RHLIKLERNYRSHGHILDSANTLIANNA------------ 302 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITAD 395 L + V + EA ++ EA + +R L E + A++ Sbjct: 303 -----RRLGKNLRTEAGAGEPVRVFEAPSDYAEAQWLIEEIRQLLREGLAHSEIAVLYRA 357 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 L+R ++ L G+ + G+ + L + D A +V P Sbjct: 358 NALSRVIEGALFNAGLPYRVYGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPAR 417 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + L L ++ SL + Sbjct: 418 GIGARTLEQLQDAARLRATPLSEAVDALGGRGAASLQAFLDLVAQMRFQT---------- 467 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 A+ L + + + + G + + +L V + Sbjct: 468 ---AAMSLPELVRHVLEASGLNAHYREEREGQERLENLEELVNAAAAFVTQEGFGLQATA 524 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + F+ +T + ++ Sbjct: 525 QQRQALGAAPDSFAATDGIDPATGETLSPLTAFLTHAALEAGDNQAQNGQDAIQMMTVHA 584 Query: 636 SRLLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 ++ L FD + + GL E ++ + + T + + Sbjct: 585 AKGLEFDAVFITGLEEGLFPHENALSETDGVEEERRLMYVAITRARKRLYLSLAQTRMLH 644 Query: 694 TRHLIYTRSLRENNIPTIASRWL 716 + RS + +PT + +WL Sbjct: 645 GQTRYNLRSRFFDELPTESLKWL 667 >gi|153931888|ref|YP_001382810.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC 19397] gi|153936482|ref|YP_001386377.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. Hall] gi|251764544|sp|A7FR61|ADDB_CLOB1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|152927932|gb|ABS33432.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC 19397] gi|152932396|gb|ABS37895.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. Hall] Length = 1147 Score = 111 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + + Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|148378429|ref|YP_001252970.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC 3502] gi|251764548|sp|A5HYX0|ADDB_CLOBH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|148287913|emb|CAL81979.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC 3502] Length = 1150 Score = 111 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + + Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|324005625|gb|EGB74844.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 57-2] Length = 1122 Score = 111 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DDLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|320176418|gb|EFW51472.1| exonuclease V subunit gamma [Shigella dysenteriae CDC 74-1112] Length = 1122 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ L + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|238754831|ref|ZP_04616182.1| Exodeoxyribonuclease V gamma chain [Yersinia ruckeri ATCC 29473] gi|238706991|gb|EEP99357.1| Exodeoxyribonuclease V gamma chain [Yersinia ruckeri ATCC 29473] Length = 1130 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 92/771 (11%), Positives = 197/771 (25%), Gaps = 87/771 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N P P I V + Q L+ + + + I Sbjct: 18 DLLKAITTALIERDPLDN----PFEPE-----VILVQSPGMAQWLQMQLAQQFSIAANIE 68 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L P S + +L+ + + L + + Sbjct: 69 ---FPLPATFIWDMFTKVLPGI---PKESAFSKDAMTWKLMWLLPDLLNEPVFSSLQR-Y 121 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE H ++ W A Sbjct: 122 LSDDGDKRKIYQLAARVADLFDQYLVYRPKWLETWEQGHEIEGLDEAQHWQAPLW---KA 178 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + A E + + I G + P + + Sbjct: 179 LTEYTRQLQQPEW-HRANLYQRFIYALHESDICPPGLPKRVFICGVSALPPIYLSALQAL 237 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290 H + ++ + I N Sbjct: 238 GKHIDIHLMFTNPCRYFWGDIQNYAFLAKLQSRKRRHYREKTELSLFREPEQAARLFNDD 297 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 Q LL D L + +E+ + + + LE+ Sbjct: 298 GEQNLSNPLLASWGRLGRDHMYLLSQVDEIQEVQAFVDIEPDNLLHAIQHDMLELEDHAI 357 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391 + ++L + + E + L L+ + + + Sbjct: 358 IGTTQETLSSSNKKRRLDPKDRSISLHVCHSPQREVEVLQDQLLAMLEADPELTPRDIIV 417 Query: 392 ITADRNLARRVKLELTRF-----GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + + IS +LL+ + Sbjct: 418 MVADIDSYTPYIHAVFANAPFERHLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 477 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 478 LALLEVPALANRFGIDEHGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 537 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + + L ++ + L+ + ++ W+ L Sbjct: 538 MLLGYAMSSDAGNWHDVLPYDESSGLAAELVGQLADMLMQLSHWRAQLAEARTLVAWSPL 597 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + S I D + +D E Sbjct: 598 CRQMLDAFFEQDNETEAVLALIE--QQWLKVISYGISAQYPDVVPLTLLRDELAARLDNE 655 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+G++P+ F +M + Sbjct: 656 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPLGF--DLMARQIQRGD 712 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724 + E + L + R +N S + L+ G Sbjct: 713 RSRRDDDRYLFLEALLSAQQRLYISYIGRSIQDNSTRYPSVLVSELIEYIG 763 >gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] Length = 1166 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 90/826 (10%), Positives = 203/826 (24%), Gaps = 82/826 (9%) Query: 182 LLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEAEHLM---KGTKGPIIIAG 234 L+ + + L R + L +++ Sbjct: 357 AATERLLRRTTDFCRAEKARRGLLDYDDLVASAASLLTRTDHAWLQFKLSHGLHHLLVDE 416 Query: 235 STGSIPATARLMSTVANHPNGA------IVLPGLDCHIPTAIWNTITEKSTNITSSN-TT 287 + + P+ +++ + V D + + T Sbjct: 417 TQDTGPSQWSVLNPLRQALLAHNGEVPKTVFFVGDRKQSIYAFQGADADLFERERAETET 476 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS--------DM 339 ++ + +L + + + R + + + + ++ Sbjct: 477 LASRDHFVSRQLFLSFRSSQAILDVVDESFTPEEARRGLSDDAPIRHVAAKPDLPGKVEL 536 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLDENKKKSALIT 393 + + + A+ R+ A +A ++ + +N K L Sbjct: 537 WPLERRDETLTEDPWSAPVDAVRPEHPTRKLAKRLAADIKKRVGRDDCILKNGDKRPLAY 596 Query: 394 ADR--------NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 D + V L+ I + +PL + L S L D ++ Sbjct: 597 RDILLLCQTRGPIFHEVLRALSEAAIPTAGADRLPLMEDIAVRDLLSALRFAVNHEDDLS 656 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 +A L+K PL + + + + D + + I + H Sbjct: 657 LAELLKSPLVGIDDDLLFALAHGRDQGVTLWSRVREAAGSDDRLAAAVAMIEEAEGTGHA 716 Query: 506 PHWQS----RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + L + + + + Sbjct: 717 SGPFALLSSYLDGGQPSGWLRFHRRLGLGVDLALEELLTDAIAFEQAEPRSLVGFVHYLE 776 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 +++ K + E+ + ++ +K E + +A + ++ I G+ K Sbjct: 777 RSLSDGRIIKRDSEDTEDVVRVMTVHGAKGREAHTVYLIDANKPSELKADFIKGDGGKLI 836 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL--SRVMQSDLNLKTAEK 679 S L L V + + + D AE Sbjct: 837 CPPSGVSHPLLDLAKEKAKAREREEYRRRLYVGMTRAEQRLVITGTAGTSKDDPEAVAEA 896 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 A + + + R R+++ R L + K R Sbjct: 897 KPPAEASWYGLVAQAMTRLGERVERQSSPGEAPLRVLS--VASSRDRRVQPDKARQSAAS 954 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 L + +R Q + S S I L Sbjct: 955 AIPNWLFRAADREVEERTLAPSHAVDQDQGRSISTIGPLA-------------------M 995 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 + RG L H + L P + + + I R Sbjct: 996 VEGQGARRRGILLHGLFERL--------PPLAPAQRRPLGARYLACHGGD--IPAEERAR 1045 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + + LE+E + + + + ++G DR+ +L+ V D+K Sbjct: 1046 WLEEVLGILENEAFAEVFSPAAKTEMAIAGRLGNR--RISGQIDRL-VLREEEVVFVDFK 1102 Query: 920 TGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 T P + + Q++L L+ + R+V Sbjct: 1103 THRPPPRRVEDVESATLSQMALYHMLLRQ----RFPGRRVTGALLW 1144 >gi|293390502|ref|ZP_06634836.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951036|gb|EFE01155.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1129 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 103/988 (10%), Positives = 236/988 (23%), Gaps = 134/988 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 E+ +L + +PL P + V + Q L+ + G + Sbjct: 11 EVQKDILVELIQRQLLPNPLQPE-----IVLVQSPGMAQWLQLQIAGQKGIAANFA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + A+ LL + + + L RL+ + D ++ L S Sbjct: 63 PMPASFIWQLYAENLLDVAQSNQFNKNAMMWRLVRLVPQYLQ--QDALRPLRHYLAYSAQ 120 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW---------EDLHALKNEKYGMWWLLAADFL-- 188 LA +AD+ D W +D+ + + + Sbjct: 121 SEQFKLYQLAGKIADLFDQYLVYRPDWISAWEHQQDDDILRQIESQLSLNNERLLAQITQ 180 Query: 189 -----KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSI 239 I + + V ++ L + E L + + I G Sbjct: 181 NIAWQGILWRALVRAVKADTGLDLVQHRAHLHQLLLEKLRENRPHFLPERLFIFGIPALP 240 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAI-----------------WNTITEKSTNIT 282 A + ++ + + + I +N + + Sbjct: 241 KAYLEIFQAISQYCDVHLFFNNPCEEYWGDIVDPKFVEKLALRTCTDYFNQADKPLLSAE 300 Query: 283 SSNTT--------YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + Q L + R+ L + + I+ L Sbjct: 301 QATQAQQHWELTYAQEKLQVGNPLLASWGKPGRDFAYLLAQLEPNDISAYVEITPHNLLS 360 Query: 335 DTSDMRNTDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKS 389 P N ++ + + E + L L D K Sbjct: 361 QIQHRILHLTPNGTTPLNYRENDRTLTFHSCHSLMREVEVLQDYLLHLLQQEPDLTPKDI 420 Query: 390 ALITADRNLARRVKLELTRFG------INIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 ++ AD + + I IS + + +LL Sbjct: 421 IVMVADIDKYTPYIRAVFGQNVTLQTAIPFSISDNKLSENNVIIAGFLTLLQLQESTFSA 480 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS-----LVLDRIAT 498 + L+ P + F L + V G + D Sbjct: 481 EDVLALLDVPAIRQRFN-IELQDLAQIRDWVKNAGVRFGLAKNDEAESNYNSWQAGLERM 539 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLT 557 + + L + + L + S+ W + Sbjct: 540 LLGYALREENGIWQDSLGLDNSFGLKGQLAGQLSAFLAALFDWFQTLQNRYSVEQWQQHL 599 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID--- 614 + L++ + + + E + + + +D++ +++ Sbjct: 600 LALTDKFFAATAETDETLFY------IKEVIRQFAEQLAEVHFSDALGVDVVADVMNNAL 653 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 E + + L R + F + L G+N+G +P+ A N F Sbjct: 654 EENPNHYRFLAGRVNFCTLLPMRSIPFKVVCLLGMNDGEYPRQQAPNSFDLMQYHRLKGD 713 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLK 732 + + + +L + R +N S + +LL + Sbjct: 714 RARRDDDRYL-FLEALLSAQDYLYISYIGRSIADNQEREPSVLVSQLLDYIVENLPAENI 772 Query: 733 KRGQCYLDWTRKLDY-----------------------TTKQPHYKRP----------KP 759 G L W +L + +P Sbjct: 773 SVGN--LKWRERLVQQHGMTAFSRKNFEKNDCTFMQSFAQQWLPLANSQVNQTLQDFIQP 830 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 FS + + +P + + L ++F + D + N + + Sbjct: 831 MMADAEPENEIEFSRLVAFVKNPVKFFFEKRLGVNFSEQEESIADSENF--ALDNALGKY 888 Query: 820 --IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKI 874 + + + + ++ + I+ + F + Sbjct: 889 AIHADLVEADEQQTDAFFARL---KVKGVLPRGEFSAIYANQLLADVAEFKGKIADYVSQ 945 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + + + L+G Sbjct: 946 TPQSRFV----QFTVPTQEGDMTLSGNI 969 >gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] Length = 1110 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ ++ +L I Sbjct: 641 --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + L ++ W + T L L + L Sbjct: 669 IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ +T+ ++ + + + + I+ +++ L FD +IL GL + Sbjct: 724 ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774 Query: 654 WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706 + +L R ++ LK A + + + + TR L Sbjct: 775 RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S L L L +G ++ + Q +++ Sbjct: 835 ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824 + +++L +D + + L + G + H + + + + Sbjct: 890 SQKGGLKLLRRLTSDWAPPFILKTLPSPESKPLTPFTPASSKRLGIVIHETLERIANEGL 949 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882 E K + P + + L + + Sbjct: 950 ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935 P + +E I D + ++G I DYK+ + Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSVHEA- 1066 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 QL A +F +D R + Y L Q Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|225851300|ref|YP_002731534.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1] gi|225646576|gb|ACO04762.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1] Length = 921 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 78/473 (16%), Positives = 155/473 (32%), Gaps = 61/473 (12%) Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + E+ I+ ++ E + + K + I S + FD L +NEG +P Sbjct: 444 EITYSEFNSILLHYLEEEDIDRR-LKGDIVQIRTPNISEGIIFDYLFFVDMNEGKYPSII 502 Query: 659 AKNPFLSRVMQSDL---NLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIAS 713 +P ++ ++ L L Q F ++++ + + + S Sbjct: 503 KDDPVINNTLRVKLEEKGLPKLNASYWQQIITFISIFNSSKNIYISYKNRDDKGNDLSPS 562 Query: 714 RWLQRL-------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 ++ L L D + + + ++ Sbjct: 563 VLVEELLRLNYGRSYFENGDTLKLEDPEEITTLKEFRLKNAAHLINTDNLLKKVVEAHIK 622 Query: 761 PPLE------------AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTD 807 E + + S+++ + PY + ++ D + Sbjct: 623 RESEYITEYEGYVNVNPKYIKLTPSKLQTFSDCPYRFFLSSVINPDTFEIVDTERIPPDK 682 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK--ENLPPHIDIIWRHL---FHK 862 GT H I+ + +KRI K+ + ++ ++ F E L P I Sbjct: 683 EGTAIHEILEFVYRKRI-KDKSRLRMIIPALVKEKFRPLLEELKPSARIFEEKRVLLLSD 741 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL-KSGFVDITDYKTG 921 I F+ + + +I V I K ++ G TG DR D K+G I DYKTG Sbjct: 742 ILTEFVIKDLERIRNIYIPEV-IEMKRSVNIYGFKFTGKIDRADRDLKNGKYIIYDYKTG 800 Query: 922 DNP---KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 ++ K QL + F + + V L + +K+ DK Sbjct: 801 KKRIDDLRKALLKGEYLQLVIY------KKFLESSGKDVQKLGLLFIKENHSEVSTQLDK 854 Query: 979 KKYSADELSEKSLKNLIEIVTLLQNGEQ-PFISHLRLSEKSNIQSEYDHLARV 1030 + EK+ K + I+ +L++G P+ +S E+ + ++ Sbjct: 855 EID------EKTDKVIYIILNMLKDGFFVPYT-----KSESCGYCEFTDICKI 896 >gi|226947662|ref|YP_002802753.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str. Kyoto] gi|226842314|gb|ACO84980.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str. Kyoto] Length = 1147 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + K Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + I+L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|168177772|ref|ZP_02612436.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916] gi|182670447|gb|EDT82421.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916] Length = 1150 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + K Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWGTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + I+L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 1044 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 88/815 (10%), Positives = 199/815 (24%), Gaps = 91/815 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK--- 79 ++ +V + P V T +A EL + K P Sbjct: 53 TTVMAARVVWLVGTGQVAPE---QVLGLTFTNKAAAELAERVRKALVKAGVTDPDAIDPD 109 Query: 80 -SLGDVV---EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 G+ V F LL + L + RLL A + L + P Sbjct: 110 NPPGEPVISTYHAFAGRLLTDHGLRIGLEPTSRLLADATRFQLAARVLREA--------P 161 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMW 180 P + L +L + + + E L A E Sbjct: 162 GPYPALTRSFPDLVGDLLALDAELAEHLVRPETLRAYDAELLLTLRGAKLTNADLRKVPD 221 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGST 236 A L + E + E H+++ +++ Sbjct: 222 AAAARRALAELVTRYRAAKRERDLLDFGDQIALSAQLARLPEVGHVLRDEFRVVLLDEYQ 281 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + A L++ + G V D W + + + + ++ + Sbjct: 282 DTSVAQRVLLAGLFGDGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPATR 341 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L S ++ + + + + + + Sbjct: 342 QAL-----------------SENRRSGGRLLDLANGLAEPLRALHAGVEALRPAPGAERD 384 Query: 357 SDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINID 414 V EE A ++ + + A++ ++ L + ++ Sbjct: 385 GIVRCALLRTHAEEIDWAADSVAHLVRTGTAPGEIAVLCRTATDFAEIQGALVARDLPVE 444 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + L + L ++ + ++ L+ P + G + L + + Sbjct: 445 VVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVA 504 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 R L V + + + D + Sbjct: 505 HARVTGEDDPDRRLAEAVEGVDPAEVISLADALDTFLETPLDGHGDDDGLPFSPDARVRF 564 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE- 593 T +L+ L E P+ +TLS+ Sbjct: 565 ARLATELRELRRSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASF 624 Query: 594 TGSCIKANAIEWIDIITRLI--DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 +A + ++ + + +T+ +L +S+ L +D +++ GL Sbjct: 625 AAGDNEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVVVPGLVT 684 Query: 652 GVWPKNTAKNPF------LSRVMQSDLNLKT------------------AEKYIGQAAHD 687 G +P + + + L ++ D + ++ + Sbjct: 685 GTFPSSQGREKWTSQGKVLPHALRGDADTLPDVASWDPRGLKDFHEAMKDHQHTEELRLG 744 Query: 688 FEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYL 739 + R L+ S +LQ L G + + + + Sbjct: 745 YVTFTRPRSLLLGSGHWWGPTQKKCRGPSAFLQALHDHCAAGYGEIEAWADEPAEDEENP 804 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + T + + P A+ S Sbjct: 805 ALHQATRPTQVVGPWPLDRGRPWPGARGGRPRPSW 839 >gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] Length = 1110 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ ++ +L I Sbjct: 641 --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + L ++ W + T L L + L Sbjct: 669 IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ +T+ ++ + + + + I+ +++ L FD +IL GL + Sbjct: 724 ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774 Query: 654 WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706 + +L R ++ LK A + + + + TR L Sbjct: 775 RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S L L L +G ++ + Q +++ Sbjct: 835 ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824 + +++L +D + + L + G + H + + + + Sbjct: 890 SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882 E K + P + + L + + Sbjct: 950 ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935 P + +E I D + ++G I DYK+ + Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 QL A +F +D R + Y L Q Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|116514016|ref|YP_812922.1| ATP-dependent nuclease, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275214|sp|Q04AN8|ADDB_LACDB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116093331|gb|ABJ58484.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1179 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + + + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S + D + + +++ L++AD+ EA +A + Sbjct: 278 -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ D L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + +F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012 >gi|300980534|ref|ZP_07175060.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 45-1] gi|300409234|gb|EFJ92772.1| exodeoxyribonuclease V, gamma subunit [Escherichia coli MS 45-1] Length = 1122 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 115/1087 (10%), Positives = 257/1087 (23%), Gaps = 167/1087 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + + + I G + P + + + H Sbjct: 177 DELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELALRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNVLVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTGFADRIDLL----KSG--FVDITDYKTGDNPKKETAQKLIDPQLS 938 ++ + G+ +T D L G P + + QL Sbjct: 939 QSMEIDLACNGVQIT------DWLPQVQPDGLLRWR---------PSLLSVAQG--MQLW 981 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 LE A + D + +E++L L +++ Sbjct: 982 LEHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024 Query: 999 TLLQNGE 1005 + G Sbjct: 1025 EGYREGM 1031 >gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] Length = 1153 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 102/933 (10%), Positives = 234/933 (25%), Gaps = 119/933 (12%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + + L + P + + + L + L +++ + E ++ Sbjct: 279 LELALRALFTEGGEGTPATWPAKTSGLKSREDLREAL--LLEQAKLE----TAREQVRAA 332 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTK 227 K A + + A ++ L + G Sbjct: 333 KVAEDTQNALLLAGLYIERHMAEKDARGALDFTDLIDKTRVLLTEKVEAAWVLYKLDGGV 392 Query: 228 GPIIIAGSTGSIPATARLMSTV-------------ANHPNGAIVLPGLDCHIPTAIWNTI 274 I++ + + P ++ + + + D + Sbjct: 393 DHILLDEAQDTAPEQWEILRALTADFFAGATSEGWSGRRAERTLFIVGDEKQSIYSFQGA 452 Query: 275 TEKSTNITSSNTTYS-------------------THPQYSLAKLLDFLDIKREDVKRL-- 313 + TH S L RE V Sbjct: 453 DPTRLLEETQGYIARIEAVGAVGKGVPLTVSYRSTHQVLSFVDALFSDPETREGVPPPVG 512 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD---------VALIEA 364 ++ R L P T ++ + + P + A A Sbjct: 513 HDLVRHELFRHGHPGCVDLWPLTRELPGEEREAWEAPVDAEGERSANRRLAEAIAAETAA 572 Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 +R +A+ R L+ + L + L R G+ + + + LS+ Sbjct: 573 ILKRGDAVFDKELGRHRAAHAGDILVLVRRRKVLFEEIIRALKRRGVPVAGADRLSLSSH 632 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA--LELVALRGNKNS 482 + L +L + ND + +A L+K P + Y L R ++ Sbjct: 633 IAFEDLLALGRFVLFPNDDLTLAALLKAPFCGLADDDIYALAKSRRATLWTELQRRSQER 692 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + ++++ +A + + + L D++ + Sbjct: 693 AEWTAARAVLEWALAEGRRRQPFEFYAAWLGLTDED-------------------GRSHR 733 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + ++ + L V E R + +L + K G+ + Sbjct: 734 AKVLTRLGAEAEEALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRV 793 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + K ++ +F+ T R L++ +W + + Sbjct: 794 M------------TAHGSKGLEAPIVFLPETTVKRGAGGSPLLVTEDGGLLWCASGKGDC 841 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 S + L+ ++ + R + + + Sbjct: 842 DASAKARR---LRDDKESQEALRLLYVALTRARDRLILCGRIDARTKDDKVGGWYAAVRA 898 Query: 723 GGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 R G+ + R P + P T++ Sbjct: 899 AFAHADIAPHVRPLGEDETAFLRYGPDPAPAPRAEEDIRVPATAPDWMTHAAPPEPAAAR 958 Query: 781 DPYAVYARRILKLDFIPHFKK--DPDRTDRGTLFHNIITELIKKRINK--NTPEINHLMK 836 ++ + R RG L H ++ L ++ + + Sbjct: 959 YAAPSRIEDNARVPAPSPLARVAGLGRYRRGELVHKLLQILPDLAPDQRASAARRLLAAE 1018 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + +E ++ F + + V + A G+ Sbjct: 1019 RDLTDDQREEMAAAAFGVLDDARFSAV-----------FGPGSRAEVALAGTSAHLPQGL 1067 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDC 954 ++G DR+ + + G V + DYKT A Q+++ AA L+ Sbjct: 1068 AVSGRVDRLVVDE-GRVLVVDYKTNRPSPDRIEDADPAYLAQMAVYAAVLREV----FPG 1122 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 R V K+ + + L+ Sbjct: 1123 RAVEAALVW--TDGPKLMPVPEKVMAQALARLA 1153 >gi|325125705|gb|ADY85035.1| ATP-dependent exonuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1179 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + + + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S + D + + +++ L++AD+ EA +A + Sbjct: 278 -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ D L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + +F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012 >gi|187731174|ref|YP_001881437.1| exonuclease V subunit gamma [Shigella boydii CDC 3083-94] gi|187428166|gb|ACD07440.1| exodeoxyribonuclease V, gamma subunit [Shigella boydii CDC 3083-94] Length = 1122 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 114/1086 (10%), Positives = 255/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ L + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQ----LLEHEDFTLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 DNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L ++ + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRHWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWHRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGLSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASRAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWH---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] Length = 1110 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 94/813 (11%), Positives = 207/813 (25%), Gaps = 107/813 (13%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + G ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDGQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ ++ +L I Sbjct: 641 --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + L ++ W + T L L + L Sbjct: 669 IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ +T+ ++ + + + + I+ +++ L FD +IL GL + Sbjct: 724 ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774 Query: 654 WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706 + +L R ++ LK A + + + + TR L Sbjct: 775 RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S L L L +G ++ + Q +++ Sbjct: 835 ATRAKESLHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824 + +++L +D + + L + G + H + + + + Sbjct: 890 SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882 E K + P + + L + + Sbjct: 950 ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935 P + +E I D + ++G I DYK+ + Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 QL A +F +D R + Y L Q Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|291447589|ref|ZP_06586979.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350536|gb|EFE77440.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 371 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 44/344 (12%), Positives = 92/344 (26%), Gaps = 25/344 (7%) Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 K A + ++L ++ + A LR + AS Sbjct: 1 MKAPADDGDQPSRFLTELGVEPRDVTGRPRRPLAVAALVAE-------LRATTVDPAASD 53 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 L+ GQ + + R Q + S S Sbjct: 54 ALREAAAHRLARLAALTDDEGQPLVPAAHPYRW-WGLEEPTRSAVPLRDRDQALSLSPSA 112 Query: 775 IKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 + QL N + R + G + H ++ + + ++ Sbjct: 113 LDQLANTCTLQWFLGR-----EVKADAPATAAQGFGNVVH-VLADEVASGRTPADLDVLM 166 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + + + FL + + +E+ Sbjct: 167 ERLDSVWNGLAFDAPWKSEQEKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEA 224 Query: 894 IG--IHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + G DR++ G + D+KTG P K+ PQL++ A++ G+ Sbjct: 225 GEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKDEVAAH--PQLAVYQLAVREGAVD 282 Query: 951 QIDCR---KVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 ++ + ++L+Q + K A E Sbjct: 283 EVFDGRRPEPGGAELVQLRQPAPKKEGGDAFPKVQAQEPLAGEW 326 >gi|148242654|ref|YP_001227811.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. RCC307] gi|147850964|emb|CAK28458.1| Exodeoxyribonuclease V gamma chain [Synechococcus sp. RCC307] Length = 1071 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 99/869 (11%), Positives = 213/869 (24%), Gaps = 62/869 (7%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 I L E R+ P NPL V I T + L E G + I Sbjct: 10 IEDLATALASELDRHKPANPLTPQRVLI--STNAMSRWLALALSERIGICAGIEFDFAGR 67 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPI 140 + + D L P Q +LA+LI +L + ++ L+ + P Sbjct: 68 H-LRQLILELDGRLPAGHRDPWDPSQLRWQLAQLIPALPQTELWEPLQQLWHQGPQQQDN 126 Query: 141 SPA-NAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 + L L+D +D + L+ + + + + Sbjct: 127 GLDTQRLQLILQLSDTLDQYGLYRPQMVRRWLNGESVDGSHAPLAAHQQWQPALLRELAQ 186 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 RL P + + P+ + G + PA +L++ A+ + + Sbjct: 187 RLEPSGIPHPAERLLHALEQ--SRQRSDPHEPLHVFGLSSLPPALWKLLAQRASSRDSPV 244 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 +L L + W ++ + + LL L + D + Sbjct: 245 LLYQLSPSLDP--WGSLPPSHHEEGDALDRLERRLLHQGHPLLASLGRTQRDFHWQLELI 302 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------------ 365 + P + L+ + + + IE Sbjct: 303 AADLQEQFERQQRPAPLCPEEAGLLQQLKADLLVGRPRGEGLPGIEPPLKLQRNQLNLEV 362 Query: 366 ------NEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 + EA A+ M+ D + + ++ ++AR L L F S Sbjct: 363 LACHGDRRQVEAAHEALLRLMAGDPSIEPRHILVMTPDVARFTPLVLAVFERPGRSSDPR 422 Query: 420 PL----------STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP-----EKYL 464 L ++ LL + ++ P + Sbjct: 423 HLPVRVTDRTLRQRNPRVDLVFRLLALASSRLSRDDVLDVLLLPELAEHLELGGLTQPQW 482 Query: 465 SRAKNALELVALRGNKNSYDI-----MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + + R + + + + Sbjct: 483 RELLDQAGICWGRDGDHRQSWGYPAGDAFSWRWGLDRLLLGLELSDGFPEQEAASGEWGG 542 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + L + ++S Q + + + Sbjct: 543 LAACNQSLATANDVLALHDACSRLFEQLQALSGPLPAERWNEQIGSAIQQLSGGDDEGWQ 602 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + L S + + + ++ + + + + + R + Sbjct: 603 APEVYELLTPLRDPEASGLALDRAAVVRLLEEAEAQQQGRYGHVSGA-VSLSALEPMRSI 661 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 ++L G++E + P ++Q + +A + + H I Sbjct: 662 PHRVVVLLGMDEQ-RLPRRDQRPGYDLMLQRPWRGDRDRRQEDRAILLEALQACSDHWIA 720 Query: 700 TRSL-----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 T + E P L R L + Sbjct: 721 TYNAIDPRSGEERNPAAPLSDLLRCLERSYRTEAGEPITTWVLQQQPPLPPLTAREVVGA 780 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR------RILKLDFIPHFKKDPDRTDR 808 P + S E++Q + DP + + + PD R Sbjct: 781 PWPMDQRWPVDECEPASLEELQQWLRDPARALLQAHGIHPHRRGDESSDPEESAPDGLQR 840 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQ 837 TL ++ ++ P+ + + Sbjct: 841 WTLGQRLLNLGSERLEANQWPQQRDALAR 869 >gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] Length = 1110 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 93/813 (11%), Positives = 206/813 (25%), Gaps = 107/813 (13%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LTLRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ ++ +L I Sbjct: 641 --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + L ++ W + T L L + L Sbjct: 669 IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ +T+ ++ + + + + I+ +++ L FD +IL GL + Sbjct: 724 ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774 Query: 654 WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706 + +L R ++ LK A + + + + TR L Sbjct: 775 RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S L L L +G ++ + Q +++ Sbjct: 835 ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824 + +++L +D + + L + G + H + + + + Sbjct: 890 SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882 E K + P + + L + + Sbjct: 950 ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935 P + +E I D + ++G I DYK+ + Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 QL A +F +D R + Y L Q Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|239944120|ref|ZP_04696057.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 591 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 72/586 (12%), Positives = 132/586 (22%), Gaps = 64/586 (10%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ A + + +++A ELR G + P + Sbjct: 22 TLVESVAARVNRGGDPARILVLTFSRKAAVELRDRMAARLG--AARGPQATTFHSYCYAL 79 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A + +S ++ + + L+ + + L + Sbjct: 80 VRAHQDADLFADPLRLLSGPEQDVTVRELLAGQLDLEKE---GLAQVRWPDELRACLTTR 136 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L W AA FL + V A Sbjct: 137 GFADEVRAVLARSRELGLGPDALADFARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAEL 196 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + G + + + PA RL+ +A + A Sbjct: 197 VHRAVLLAERPEVAAELAGRYDAVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKA 256 Query: 267 PTAIWNTITEKSTNITSS-----NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 A + D V L Sbjct: 257 RGAGARAGRTLIAFGDPDQSIYTFRGADVNGILDFPDTFRRADGSPAPVGVLTTSRRSGA 316 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 G + + + ++ + + V E +IA LR + Sbjct: 317 GLLAATRLLTRRMPLTRLPADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRA 376 Query: 382 LDENK----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNA 436 E+ + + L+ A V+ LT G+ +++ PL + L + L A Sbjct: 377 HLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRA 436 Query: 437 IF------------------------------------KLNDFMAIATLVKHPLAKFGFP 460 + D TL+ PL Sbjct: 437 VATAALQCLPDLPDLPDLPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLG--SMD 494 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 L R AL D P A Sbjct: 495 AADLRRLGRALRDEERAAGIRIPAPSD---------ELLARALAEPERLVTHDPAYAHGA 545 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 L + + L T + + + + W Sbjct: 546 QRLGALLRKARELLQGGGTAEEALWTLWNGTPWPGRLERAALRGGA 591 >gi|74313390|ref|YP_311809.1| exonuclease V subunit gamma [Shigella sonnei Ss046] gi|73856867|gb|AAZ89574.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Shigella sonnei Ss046] gi|323167841|gb|EFZ53532.1| exodeoxyribonuclease V, gamma subunit [Shigella sonnei 53G] Length = 1122 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 113/1086 (10%), Positives = 256/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFSIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIRAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 SAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|104774000|ref|YP_618980.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983955|sp|Q1GAB0|ADDB_LACDA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|103423081|emb|CAI97802.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1179 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 106/994 (10%), Positives = 247/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + + + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S + D + + +++ L++AD+ EA +A + Sbjct: 278 -EREKIASPASPARDLNQAWQGQGQPD--------LNNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDIDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ D L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQDAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDIAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + +F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSEILQEPLYQQFLRDPFNEYLFKVFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNRDLLAGGRQFDLLGAFY 1012 >gi|147669238|ref|YP_001214056.1| exonuclease-like protein [Dehalococcoides sp. BAV1] gi|146270186|gb|ABQ17178.1| RecB family exonuclease-like protein [Dehalococcoides sp. BAV1] Length = 379 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 36/266 (13%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S+S+I Q + P I L + GT H+ + + Sbjct: 1 MRPLSYSQIDQYQSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53 Query: 827 NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884 P + + SH+ I+ +R L +I F ++ + V Sbjct: 54 PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943 + ++ G+ LTG DR+D L SG + I DYK+ E Q + QLSL A Sbjct: 111 HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 ++ + V L L+ + + + A L + + + + + Sbjct: 167 VEQIWY-----LPVGELCLYHLRSNTAMRCPARSKEVIADARRLVLEVAEKIEKAI---- 217 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 F + E + ++ HL Sbjct: 218 -----FPA----CENNFCPCDFAHLC 234 >gi|149927014|ref|ZP_01915272.1| RecB family exonuclease-like protein [Limnobacter sp. MED105] gi|149824235|gb|EDM83455.1| RecB family exonuclease-like protein [Limnobacter sp. MED105] Length = 865 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 73/604 (12%), Positives = 163/604 (26%), Gaps = 50/604 (8%) Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 +A + + + L L R+ + V Sbjct: 261 PDETTQAQQAAHQILEWLREDPVTEIAVAVLDRLAARRLVGLLADIGVLVDDRTGWRLST 320 Query: 518 ELAVLLVDHILQCIT---------------PLVTYKTNKNSTCGNL-SISDWTKLTVTCL 561 DH+LQ PL + G+ ++ W + Sbjct: 321 SNVAGWFDHLLQQFVAQGQLTDIVQPFTGLPLEHLEPWAFGKTGSRHPLAQWAGAFLALF 380 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + LD L +E G+ L ++ + + + + +A E++ + + +P Sbjct: 381 EKHGLD-----TALQPDEAGQQLLTVLGLMRQVPAQTEFDAHEFLAAWRSWAESQRFRPL 435 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 +S + ++ L +R+ F +++ G + + ++ L + +L Sbjct: 436 DIESP-VRMVPLLSTRMRQFKRVLVLGCAQSHFQESPPG--LLPPAVAQELGFPGPRLAR 492 Query: 682 GQ-AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 Q + +E+ + + S + P + L L ++ Q Y Sbjct: 493 IQKISALYELLLHSNEVTLVHSAQVAGKPEMLLPELMWLDIVLRDSESHAQPWASQWYRA 552 Query: 741 WTR-KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 + +++ + + P + + + + L Sbjct: 553 PSDFEIEVREAPEQALQLTALSDSGSIPESLRVTALDDWKACRLRFGLKHALPWPAQRDE 612 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKN-----TPEINHLMKQIIDSHFEKENLPPHIDI 854 RG H ++ + + + + K L + Sbjct: 613 GAMRYEQLRGIFVHKVLEKTAQYMALPGQPVNQLQAWKQTLLDQAQLVWNKLELDDRATV 672 Query: 855 I-WRHLFHKISHSFLEHEEKIQ-SSIEKIFVNIPAKMAI----ESIGIHLTGFADRIDLL 908 + F +I + Q + + + + L G DR+D Sbjct: 673 YPFLKFFDQIVPRLAGKLMERQIQGWQFKGAEQQIEHTLVLQPSGASLALKGRVDRLDTR 732 Query: 909 KSGFVDITDYK-TGDNPKKETAQKLID-PQLSLEAAALKAGSFSQIDCRKVANLFYIRL- 965 + I+D K T K+ + PQL A L A L ++ L Sbjct: 733 GE-ALAISDIKFTNPAVLKKRLADPLSQPQLPAYQAML---------NSPGAQLDFLGLH 782 Query: 966 KQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 K K ++S L ++ T L + Q ++ Sbjct: 783 KDKVDWVSFPPLSNEFSEQGFKSWGEVLLSQLATELNSFFQGKAVWQANPGEACEYCAVR 842 Query: 1026 HLAR 1029 + R Sbjct: 843 GVCR 846 >gi|322804706|emb|CBZ02258.1| ATP-dependent nuclease, subunit B [Clostridium botulinum H04402 065] Length = 1153 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + + Sbjct: 777 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKQGL 834 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 835 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 894 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 895 GNFKPSYYELSFDINGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA 954 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 955 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1009 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1010 MSDEEIEKSIIKNLK 1024 >gi|161615930|ref|YP_001589895.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365294|gb|ABX69062.1| hypothetical protein SPAB_03727 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1123 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 108/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + N S Q Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRCHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 1062 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 100/872 (11%), Positives = 217/872 (24%), Gaps = 91/872 (10%) Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 +P + A+ LA ++ + + +L+ + A+ L + Sbjct: 183 GRRMAEQLAAPDRVLAAAEELARLV-RTLPKGPRQRAEPSLELREAVAVQQARAELLGVV 241 Query: 192 SKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246 ++ +RL A + +++ + A L+ Sbjct: 242 AR-MQDRLRSSGAVDFATQTARAAELAQRFPQVRAEECAAHRVVLLDEYQDTGHAQRILL 300 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + P G + ++ ++ L Sbjct: 301 RALFGPPRIGGAARGGGANGAAVTAVGDPHQAIYAWRGASSG-------------NLAAF 347 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD-VALIEAD 365 + D ++ R+ + +R I ++ + V + D Sbjct: 348 QADFGAPEALTLMTSWRNPASVLDLANLTAAPLRRAGIAVPELAARPDAPAGEVRVALFD 407 Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423 + E IA LR + + + A++ A V LT G+ + L Sbjct: 408 DAAAERAWIAERLRHAAQTSPTRPSMAVLVRRNADAVPVAEALTAAGLEAQVIGLGGLLA 467 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 T + L ++L I A ++ P + G + + Sbjct: 468 TPQVAELVAMLELIADPGASAAALQVLTSPRWRIGARDLAALAQRAQELGPGRARPLAPR 527 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 D +L + +A + + + + L + Sbjct: 528 DPAELVEQLTAVLADDGSERAGLGDALADLGDQGRYSAAGYARLALLAGELDRLRGQLAR 587 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 V + + ++ + + + GS A + Sbjct: 588 PLPEF------VTLVERVTGLAVEADAQAKERLSAFASVVAEHAKAAELLGGSASLAGLV 641 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 ++ + + G V + +L ++ L +D + + L GV+P A++ + Sbjct: 642 GYVRLAETVERGLPVGEVAPDPRKVQVLTVHAAKGLEWDVVAVAHLCAGVFPTGRARSTW 701 Query: 664 LSRVMQ---SDLNLKTAEKYIGQAAHDFEMANGT---------RHLIYTRSLRENNIPTI 711 + + + DL T+ + + R L Y R + Sbjct: 702 IGALAELPPEDLGPLTSSQDRAELQEMLRAEREAAKELAGEEERRLAYVAVTRAKQTLLL 761 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + WL ++ R + E Sbjct: 762 SGHWLAEGAERALGPSAFLVEWRDALVAAGGSPDMWAESPALDHMRPASGESEGALWPPD 821 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD------------------------ 807 ++ A R L + PD Sbjct: 822 PLLGRRAQTQRGAERVRAALADAVPLPRPEGPDAELYEAAAALVAERAAAAEARSVERAG 881 Query: 808 ------RGTLFHNIITELIKKRINKNTPEINHLMKQ----------IIDSHFEKENLPPH 851 G E + R P + + + LP Sbjct: 882 LTVSDVVGIAVDPAGFERERARRGPRPPAPEAQAGIGFHEWVRRWYLSEELVGLDELPGA 941 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 D K+ FLE +S + V P ++ ++ G+ + G D + G Sbjct: 942 ADDDDAVASEKLRQKFLESPWAARS---PVAVETPFELNLD--GVLVRGRIDAVFAEPGG 996 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + D+KTG ++ QLS+ A Sbjct: 997 GYVVVDWKTGRA----DLRRAKA-QLSVYRLA 1023 >gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [polymorphum gilvum SL003B-26A1] gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] Length = 1165 Score = 110 bits (274), Expect = 2e-21, Method: Composition-based stats. Identities = 85/882 (9%), Positives = 198/882 (22%), Gaps = 86/882 (9%) Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELNASSP 207 A+ D++D++ E+ + L + + Sbjct: 313 AEEFPDVLDLMLREQARLLALVERRRAAVTLEGTAAILRLADAVIADYEAVKARRGLLDF 372 Query: 208 VGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN-------- 251 + ++ + I++ + + P ++ +A Sbjct: 373 EDLVVRTANLLSVSEAAQWVQYKLDQGLDHILVDEAQDTSPRQWEVVKALAEEFFAGEGA 432 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HP---QYSLAKLLD 301 + D + + HP Q S D Sbjct: 433 RTRARTIFAVGDEKQSIYSFQGAVPAYFDEMRRYFERRAREAARDFHPVELQLSFRSTPD 492 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L ++ + ++ L +K + + Sbjct: 493 VLGAVDLVFQQPEVHKGLSQVARAPVHEAIRREPGLVEIWPLELPDKTVEPDDWTAPIDR 552 Query: 362 IEADNER-EEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDIS 416 I N A IA LR+ +DE L+ + EL R I S Sbjct: 553 IGEGNPMLRLARRIAETLRIWIDEGTADAGDVLVLVRKRGAFVEALNRELKRLDIPAAGS 612 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + L+ + L +L I D +++A ++K PL + L Sbjct: 613 DRLVLTDHIAVKDLIALGRFILLPEDDLSLACVLKSPLFG--LDDDALLEIARDPVDRLR 670 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 G + ++ + T E + D + L Sbjct: 671 AGTLWQSLLRKSETETRWLSVRKALETCRSRADFMPPFEFYARLLAADDGRRKFRARLGA 730 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + L++S T + W E + + Sbjct: 731 EVDDVLDEFLALAMSYEQTGTPGLEGFLA----------WLEAAPTQIKRELTNAGGLVR 780 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + + ++ ++ P + + + + + L+ Sbjct: 781 IMTVHGSKGLEAPIVILVDPGSAPAVARHDPALLERPRGTDPMVPPALVWLPTKADR--- 837 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW- 715 + ++ + + + A Sbjct: 838 --------TGWHAEAVDAVREAAEEEYRRLLYVAMTRAEDRLLVCGWAPSRGAHEACWHS 889 Query: 716 ---------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 + + G +K G + +P + P+ Sbjct: 890 LVAAALVPQAEEIKDAAGRTVCWRWQKAGAEPPPRVKAEAAPAAEPPARPDWLVRPVPPA 949 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRIN 825 P+ + + + ++ +RG L H ++ L Sbjct: 950 PQVPRLQPSRAFEAMEQKEGIEPVAGRTALEAIRQPAGWALERGRLMHRLLETLPDLPAA 1009 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + ++ + F + R + L + + + Sbjct: 1010 ERAAAAVRFVEAALPQRFAQH----------RDALLDEAERILAGADFAPLFAARGRAEV 1059 Query: 886 PAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLE 940 + + + ++G DR+ G V I DYKT P E + QL++ Sbjct: 1060 AIVGTLTGPDGRQVAVSGQIDRLVEEP-GRVLIVDYKTNARPPALLEGVPEEYLAQLAVY 1118 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 ++ V +S Sbjct: 1119 RRLVQDI----FPGLPVEAALLWTAAPSLMPLPGDLLDAAFS 1156 >gi|319442809|ref|ZP_07991965.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM 44702] Length = 1179 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 91/897 (10%), Positives = 228/897 (25%), Gaps = 84/897 (9%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELR 61 +++ V A T+ + N L+L V T++A +EL Sbjct: 26 DQQAAVIGAPAGPMLVVAGAGAGKTETMAARVVWLVANGLVLPEQVLGLTFTRKAARELG 85 Query: 62 SEFIEITGKKSTI-----LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLI 116 ++ +P I + F D++ Y L P R++ Sbjct: 86 VRIRARLQSLASSGLVESMPAITPTVS-TYDSFAGDIVREYGLLLPTEPTGRVITDTERW 144 Query: 117 LIWRNKLPDIIKDL--YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174 +I R+ + + + P + + +LA D+ + ++ L + Sbjct: 145 MIARDVVLERSTGFTTHRSVPTIIDDMLELNDGMDNHLATFTDVDDECRATAAEIDGLPD 204 Query: 175 EKY------------GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH- 221 L+ L + RL + N + + A H Sbjct: 205 RDGKALKGVDTTLRKIGDALVYRRELLEVVADYRARLADRNLMTFGAQMSKAAQLVAAHP 264 Query: 222 ----LMKGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTAIWNTIT 275 + +++ + A L+ + V D + T Sbjct: 265 EVGAAQRRRFRVVMLDEYQDTGHAQRVLLRGLFGGGVDPDLTVTAVGDPMQSIYGFRGAT 324 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + ++ T D + L + + Sbjct: 325 AANLTHFRTDFPTGTGK-----------DATPARKRELTTSWRNPARVLDLANTVSRWSL 373 Query: 336 TSDMRNTDI-LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK------ 388 + + + + DV D EE + +A L + + + Sbjct: 374 DAAGTGSPASVSPLVSRPGAGTGDVKAAWFDTREEELVWLADEL--AARYHGRDTSRPFS 431 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 +A++ A + L + +++SAG L + + + L + +D +A+ Sbjct: 432 AAVLLRKNAEATPIHDLLIEREVPVEMSAGPGLLEVPEVADVYATLRVLVDPSDDIALLR 491 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRG---------NKNSYDIMDLKSLVLDRIATQ 499 L+ G + + + R + ++ + L +LV + Sbjct: 492 LLTGVRWNIGAADLQALARRVDQLSLRDRRVDSEDTENSDGDADEPTGLTALVTPQPGDS 551 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCI---------TPLVTYKTNKNSTCGNL-- 548 V + + + + V L + + L Sbjct: 552 PAMATVRERLADIDRDSSRVPVGLAEALADLRGMEEFGMSEEGLQRLGDLGRELRFLRLQ 611 Query: 549 -------SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + + V HR + + + Sbjct: 612 SLGKPLNDLVADIEQMCGVRTEVLTRYHRDRRRSIGASHLDRFAEVVRSFADLSGASPGA 671 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++++ G ++S + +L +++ L ++ + + + + Sbjct: 672 LVDYLRAAEAREKGLDAGEVEKRSDCVQLLTVHKAKGLEWEIVAVPHATRKTYADAVKRP 731 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 S + + G A D G L + + + + L V Sbjct: 732 TVESWTTNARI---LPSGLRGDATDDPTDITGMPVLDLSDVVDRKGVVEAEDAFKVALGV 788 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + + + K P L + S + L+ Sbjct: 789 HDAKEDDRLFYVAVTRAEETLLVSGAAFNKDAKKPVDPSVALTLIRDRLAASAPECLVT- 847 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 + + K+ + G++ H ++ + + ++++ Sbjct: 848 -----WSDLGMVYSKDALKRLEKAREDGSMQHREDAVMVPENPAARNDLVEAYVREL 899 Score = 64.6 bits (155), Expect = 1e-07, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 58/231 (25%), Gaps = 35/231 (15%) Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L R + + + + T L ++ + +E Sbjct: 925 LVRAAMTARDATTPDTGTLAEEWARETALLAREHREQTVPEVVVPL-----GSRLTATEA 979 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 L DP ARR + + RGT FHN + + + E+ Sbjct: 980 VALSRDPEEF-ARRRRRPVPLEPRPYT----KRGTAFHNWVEQHYGSVGLFDEDELPGAA 1034 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + + + FL+ + + V + + Sbjct: 1035 DATLAD----------------PVLATLKQKFLDSVWADR---VPVSVEGSYSVILAGHL 1075 Query: 896 IHLTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 G D + + D+KTG P QL++ A Sbjct: 1076 FE--GRIDAVFHDSDDPLTGWTVVDWKTGRKPTGRDL-TDASLQLAVYRLA 1123 >gi|241759370|ref|ZP_04757475.1| exodeoxyribonuclease V, gamma subunit [Neisseria flavescens SK114] gi|241320315|gb|EER56634.1| exodeoxyribonuclease V, gamma subunit [Neisseria flavescens SK114] Length = 1099 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 94/738 (12%), Positives = 195/738 (26%), Gaps = 78/738 (10%) Query: 35 RYDPLNPLL--LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD 92 R +PL LA + V ++ + L F G + + + + Sbjct: 19 RIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL--KFSLPAGLAWQ-LMRK 75 Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 L+ P S L L + +++ + L S + LA + Sbjct: 76 LVPDVPPLSPFSPEVMRWRLLDLFRSEMFQTAPEYENVRLKLESYLYSSASADYQLAGQM 135 Query: 153 ADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 ADI D W D L L +++ W W R ++ + S Sbjct: 136 ADIFDQYLVYRPDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQS 181 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + + A+ + + G + P +L+ ++ H + + Sbjct: 182 ALHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQY 241 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQ--------------------------YSLAKLL 300 + + + ++ + + HP Y K Sbjct: 242 WGEVIDEA-QILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDD 300 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 L ++D++ L S +Y P+ V Sbjct: 301 TLLHCLQKDIQNLIMPSERLYQ-QEEGEAGGQQALVQVHDADGNPVCVEPDKLLNDGSVK 359 Query: 361 LIEADNEREEAI----SIAIALRMSLDENKKKSALITADRNLARRVK------LELTRFG 410 ++ A + E +++ L+ + D A++T + Sbjct: 360 IVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQA 419 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSR 466 + IS L L+ + + + L++ L + L Sbjct: 420 LPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLH 479 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--V 524 A V ++ D D + +P + + + + Sbjct: 480 ETVAGLNVHWGLDQTMRDGKDNLFTWQQAVERLALGWMLPEGGNGMWRGVSAWYSNVNQL 539 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 D + T ++ W + L+ + + ++ ++L Sbjct: 540 DVFSGFAEFIRTLADMAAQWQAPANVEIWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSL 597 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + I I R +D E+ S + + R L F + Sbjct: 598 AKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMV 655 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL 703 L GLN+G +P+NT F + E R L + Sbjct: 656 CLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIG 713 Query: 704 RE--NNIPTIASRWLQRL 719 R+ N+ S + L Sbjct: 714 RDIRNDAEFAPSSLISEL 731 >gi|307251156|ref|ZP_07533078.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856822|gb|EFM88956.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1114 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 100/975 (10%), Positives = 244/975 (25%), Gaps = 131/975 (13%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSGEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKLDY------------------------TTKQPHYKRPKPFPPLEAQPRTYSF--- 772 +++ L + + ++ +P + Sbjct: 762 NFSEALFWQKMVVQQPLTVFSPKNFTPQYGSYDKEWLLEQQHEPLADFLNESFDLKAEIP 821 Query: 773 -----SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 ++ +++P + L + F ++ +++ +L +L + + Sbjct: 822 TEINLEDLIAFVSNPIKYFFNHQLGVYFRND-EESIAESEKFSLSDLDDYQLRDQLVTLE 880 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 E KQ + + + + F E + + + Sbjct: 881 PAEREAFFKQ---EQLKGNLPIANFAKVSLQDLDDSINEFRELILPYLGESDILEIERLF 937 Query: 888 KMAIESIGIHLTGFA 902 ++ + I L G Sbjct: 938 EVE--QLKIRLFGNI 950 >gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 1152 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 87/827 (10%), Positives = 196/827 (23%), Gaps = 115/827 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234 A I K +T+ N + ++ + I++ Sbjct: 340 AAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDHILLDE 399 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P +++ +A N V D + ++ Sbjct: 400 AQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAENGRII 459 Query: 287 TYST----------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 YS D L + N + + Sbjct: 460 QKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEHVKTVHEPIRVHSP 519 Query: 337 SDMRNTDILENKIPN-IQKCFSDVALIEADN---EREEAISIAIALR--------MSLDE 384 D+ D + K S V ++ + A +I+ L+ L Sbjct: 520 GDVIIWDAISKKTNEFPDDWLSTVDHLDTPQICLAEKIAETISSWLKNGEMLPAKKRLLR 579 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 L+ + L + + + + L+T + L +L + + D + Sbjct: 580 AGDIMVLVRKRDQFVPALSRALKLRHVPVAGADRLQLTTHISVRDLMALARFVLQPQDDL 639 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI---ATQKN 501 ++A ++K PL E Y + + ++ +R+ T + Sbjct: 640 SLACVLKSPLFSLSENELYQLAVQRT--GSLWESLSTHSSSHAVFKIIFERLNTYRTLVD 697 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 V + S + DK ++ + L + + + L Sbjct: 698 KMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTIQKTG-----LPGLQAFL 752 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + ++E L + + + ++ + +D Sbjct: 753 EILSINEPEIKRELD-----QNCEEVRIMTVHAAKGLEGAVVFLVD-------------- 793 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 G+ + L + ++ L+ Sbjct: 794 ---------PGSAIWHPQYAPHFLKCSLGDKQVFIWRPNAQHHTKHFDKVLSRLKERAEE 844 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + +L+ +K + W Sbjct: 845 EYKRLLYVGMTRAEDRLIIC---GYTNQKETPNTWLQLVKKALKPHAVPIKGPAEDITAW 901 Query: 742 TRKLDYTTKQP----------HYKRPKPFPPLEAQPRTYSFSEIKQ------------LI 779 + + P P P P + S+ + Sbjct: 902 RYCITSSCPAPMYQEISCETHQIFPPLPAFFHNKVPTELTLSKPLRPSVVGINDTKTEFF 961 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 +L + G H ++ L K + Sbjct: 962 PQKERFSISPVLGEKNTKKTF----SIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKA 1017 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 SH+ K + IW I + E S++ V + + I ++ Sbjct: 1018 -SHWHKTQREKALHHIW-----TILDN--PDLEPFFSNLSHAEVALMGIVKINGKEQMVS 1069 Query: 900 GFADRIDLLKSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALK 945 G DR+ + + V D+KTG +K Q++L L+ Sbjct: 1070 GQIDRLCITHN-SVFFADFKTGLSPENDTDIKKHHLLQMALYQKLLQ 1115 >gi|73748458|ref|YP_307697.1| hypothetical protein cbdb_A602 [Dehalococcoides sp. CBDB1] gi|73660174|emb|CAI82781.1| conserved domain protein [Dehalococcoides sp. CBDB1] Length = 379 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 36/266 (13%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S+S+I Q + P I L + GT H+ + + Sbjct: 1 MRPLSYSQIDQYQSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53 Query: 827 NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884 P + + SH+ I+ +R L +I F ++ + V Sbjct: 54 PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943 + ++ G+ LTG DR+D L SG + I DYK+ E Q + QLSL A Sbjct: 111 HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 ++ + V L L+ + + + A L + + + + Sbjct: 167 VEQIWY-----LPVGELCLYHLRSNTVMRCPARSKEVIADARRLVLEVAGKIEKAI---- 217 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 F + E + ++ HL Sbjct: 218 -----FPA----CENNFCPCDFAHLC 234 >gi|168463849|ref|ZP_02697766.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633402|gb|EDX51816.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1123 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 104/941 (11%), Positives = 238/941 (25%), Gaps = 113/941 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKTMRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGG---------------- 724 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRTY 770 R + + + +Q Y R P P T Sbjct: 773 EARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPETL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 + +++ P + + L+++F + PD G + + +L+ + ++ Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEED 892 Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 E + + + E + L ++ Sbjct: 893 DAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] Length = 1110 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 93/813 (11%), Positives = 207/813 (25%), Gaps = 107/813 (13%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVRLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LILRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYA---- 640 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 ++ ++ +L I Sbjct: 641 --------------------------------NDKPIWVALQNASEIAVLTSDGKNRINR 668 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + + + L ++ W + T L L + L Sbjct: 669 IFSILSAAFDNRDRLLLAQWIEGIWTAL--GGPACLSNSTELMNTQAYFQLLETLEN--- 723 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ +T+ ++ + + + + I+ +++ L FD +IL GL + Sbjct: 724 ---------DFTLERLTQKLNQLYAQIDTDAKNPIQIMTIHKAKGLEFDHVILPGLEKRP 774 Query: 654 WPKNTAKNPFLSRVMQSD------LNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLREN 706 + +L R ++ LK A + + + + TR L Sbjct: 775 RSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKRIEKEKTTNEITRLLYVA 834 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S L L L +G ++ + Q +++ Sbjct: 835 ATRAKESFHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLP 889 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRI 824 + +++L +D + + L + G + H + + + + Sbjct: 890 SQKGGLKLLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGL 949 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--F 882 E K + P + + L + + Sbjct: 950 ESWDKERIENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQK 1009 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDP 935 P + +E I D + ++G I DYK+ + Sbjct: 1010 SEYPITL-VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA- 1066 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 QL A +F +D R + Y L Q Sbjct: 1067 QLQQYA-----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|204928078|ref|ZP_03219278.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322400|gb|EDZ07597.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1123 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKSVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPELPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLNPKDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|317493214|ref|ZP_07951637.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918874|gb|EFV40210.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1133 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 113/989 (11%), Positives = 245/989 (24%), Gaps = 128/989 (12%) Query: 7 NVFTIAPS--SPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +FT+ S +++I AL+ G ++N I V + Q L+ E Sbjct: 10 RMFTVYHSNQLDLLKQLIAALIEGQPLQNPFEQE---------VILVQSPGMAQWLQMEL 60 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + G + I L ++ S +L L+ + Sbjct: 61 AKQFGIAANIE---FPLPATFIWNLFTQVMPGIPKESAFSKDAMTWKLMWLLPKMLEQEA 117 Query: 125 DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLL 183 L LS LA +AD+ D +W + Sbjct: 118 ----FLPLARYLSDDEDRRKHFQLAARVADLYDQYLVYRPEWLQIWERGEYVDGLDESQQ 173 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPA 241 L +A K +T L + ++ + + I G P Sbjct: 174 WQAPLWVALKEYTAELKQPEW-HRANLYEKFIQTLEQATACPQGLPKRVFICGIAALPPI 232 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWN--------------------TITEKSTNI 281 + + H + ++ + I + I+ Sbjct: 233 YLDALKALGKHIDVHLMFTNPCRYYWGDIQDYAFLAKLQSRKRRHHIQRQQEISLFRDPQ 292 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR--------------SMVI 327 ++S Q LL D L + Sbjct: 293 SASELFKPDGEQDLSNPLLASWGKLGRDHMYLLAQREPQEVHAFVDLTEDTLLTRIQRDL 352 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN-- 385 + D + +++ +++ + + E + L E+ Sbjct: 353 LELEDHSQIVDSPERLNSSSGKRLLERGDRSISVNLCHSPQREVEVLHDRLLDLFAEDPS 412 Query: 386 --KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + ++ AD + + + IS +LL Sbjct: 413 LTPRDVIVMVADIDSYTPFIQAVFGNAPRERYLPFAISDRSARQAHPVIQAFLTLLELPN 472 Query: 439 KLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK------- 489 + TL++ P FG E+ L R ++ ++ +R + ++ L Sbjct: 473 SRFTSEHVLTLLEVPALAAHFGISEEGLRRLRHWVDESGIRWGLDDDNVRALDLPATGQH 532 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNL 548 + + + L+ + + L+ + G Sbjct: 533 TWQFGLTRMLLGYAMDSRCGDWNGVLPYDESSGLIAELAGQLADLLMRLSVWRTRLSGEY 592 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + +W L L E + + I D Sbjct: 593 RVQEWQPLCREILNEF--FEQDSETEAVQALIEQQWLKVIGYGISAEYPQAIPISILRDE 650 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 +T +D E + + + + R + F + L G+N+G++P+ A F Sbjct: 651 LTSRLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTIAPLGFDLMAN 709 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD 726 + ++ + + L + R +N P S + L+ Sbjct: 710 KVQRGDRSRRDDDRYL-FLEALLSAQERLYISYIGRSIQDNAPRYPSVLVSELMEYIAQS 768 Query: 727 F---------FDNLKKRGQCYLDWT----------------------RKLDYTTKQPHYK 755 D+ KR YL L + Sbjct: 769 HHLPGDETLDVDSSAKRVMEYLQIQHPRVPFASENYAVGSESQSYASEWLPAARRSGEAH 828 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 + + T + E+ + P + + L ++F+ + PD Sbjct: 829 QEFALALPLEEFSTITLDELIRFYRHPVRAFFQMRLGVNFVLEETELPDEEPF------T 882 Query: 816 ITELIKKRINKNTPEIN---HLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHE 871 + L + ++N + + LP ++ + Sbjct: 883 LDNLSRYQLNSQLLNQLIDGDEAETLFRRFRSAGGLPYGAFGELYWEKQQEEMSEVAAKV 942 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 + + + ++ G+ LTG Sbjct: 943 REHRQAG------HSIEIDYMLGGVRLTG 965 >gi|312880760|ref|ZP_07740560.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] gi|310784051|gb|EFQ24449.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260] Length = 976 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 99/757 (13%), Positives = 193/757 (25%), Gaps = 104/757 (13%) Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----------K 388 + D + + + ++EA + R E ++A L + + + + Sbjct: 243 LDAADQFGVLPARLDSPPATLRILEAGDRRFELETLARELALWAAGDPEALLPPPFPGFE 302 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 + ++ D + L L R+GI + G + T + +A Sbjct: 303 AVGVSVDPHQGEAAGLVLERYGIPHVLRGGGSVGETDLGRLPRLCADAAGSGWPTERTLR 362 Query: 449 LVKHP-LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 L+ P L FP + E K +D + + P Sbjct: 363 LLSLPCLGGASFPAAQARGTAPSGEEEWTAFLKGFPPFLDRFRRLRGFARDLQGGGTPPK 422 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 L LV L G ++ T + + Sbjct: 423 --------LLRLLRDLVSRDTPWTRALADLAGEGAERDG--AVHRLASATAELDRKILSL 472 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 E P + + + + + + + Sbjct: 473 EEATPP------------------LGEAAQNPLSGGDAVAFLETWAEEARTSQAQPLRGA 514 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE--------- 678 L + L + +L G WP ++ L+ + LN AE Sbjct: 515 LTVYPGSPPVLADHRWFVLTGATAPAWPGALKESALLADGDRHSLNGLEAETLGLERTHL 574 Query: 679 ------KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + +A + G + TR L+++ + + LV + + Sbjct: 575 PVLSEVRVQREALFRRLVLTGREGCLLTRPLQDDQGRPLPPTPFEAPLVDQLSQEEPPRR 634 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRP--------KPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + L + P R P +FS + + P+A Sbjct: 635 RPLSQLIPLAGPLFEDAEGPLPSRRLLRGVRGNAPQEGRGEPRTRGTFSGLDRFAGCPFA 694 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF- 843 + + L L D G H + + + + ++ + F Sbjct: 695 FWCEQELGLAPF--PTGRFDPARVGNALHELWQRAWDPQSPQRAQGLEAAAVRLFEEVFR 752 Query: 844 -----------EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + + + + + E + + Sbjct: 753 DPDRGYRELLCDPALARHALRLREQARRLGAVQD-AQEERLQALFPRGGVLRETLEPQAV 811 Query: 893 SIGIHLTGFADRID--LLKSGFVDI-TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + G DR D +G V + DYK G + Q QL AAL Sbjct: 812 LGSVSFRGRCDRADLWETPAGTVAVLLDYKLG---SSKRYQTH--LQLPAYVAALTESPP 866 Query: 950 SQIDCRKVANLFYIRLKQKF--------------KIDCITNDKKKYSADELSEKSLKNLI 995 +A Y+ L + K K S + L E++ K + Sbjct: 867 EGF-PFPLAGYGYLCLGDGGFAGRFAQGHEDLAEAYRGTSPRKGKVSFESLQEQAWKTMG 925 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + L++G P R S + L R E Sbjct: 926 ALAEALESGRYP----ARYDSPSCPGCPFGGLCRRGE 958 >gi|261381358|ref|ZP_05985931.1| exodeoxyribonuclease V, gamma subunit [Neisseria subflava NJ9703] gi|284795674|gb|EFC51021.1| exodeoxyribonuclease V, gamma subunit [Neisseria subflava NJ9703] Length = 1099 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 88/727 (12%), Positives = 193/727 (26%), Gaps = 76/727 (10%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 LA + V ++ + L F G + + + + L+ P Sbjct: 30 LAQEEVVVQSQGMRRYLNVFFARKLGVAANL--KFSLPAGLAWQ-LMRKLVPDVPPLSPF 86 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S L L + +++ + L S + LA +ADI D Sbjct: 87 SPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYR 146 Query: 164 KKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 W D L L +++ W W R ++ + S + Sbjct: 147 PDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQSAPHRVALWEKL 192 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 A+ + + G + P +L+ ++ H + + + + + Sbjct: 193 LAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQYWGEVIDEA-QI 251 Query: 278 STNITSSNTTYSTHPQ--------------------------YSLAKLLDFLDIKREDVK 311 ++ + + HP Y + L + D++ Sbjct: 252 LKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGRDDTLLHCLQNDIQ 311 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 L S +Y + + + P+ V ++ A + E Sbjct: 312 NLIMPSERLYQQEEGEAGAQ-QALVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLREL 370 Query: 372 I----SIAIALRMSLDENKKKSALITADRNLARRVKLE------LTRFGINIDISAGIPL 421 +++ L+ + D A++T + + + IS Sbjct: 371 QILKEELSLVLQKNPDWQPHDIAVLTPNIEPYSPFIEAVFGQEHVGSQALPYSISDVKLS 430 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLSRAKNALELVALR 477 L L+ + + + L++ + L A V Sbjct: 431 RRQPLLYALAQTLDLLESRFEVDKVLPLLESWLVLQRFGLSEEDVPLLHETVAGLNVHWG 490 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VDHILQCITPLV 535 ++ + D + +P + + + + +D + Sbjct: 491 LDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIR 550 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T ++ W + L+ + + ++ ++L+ + Sbjct: 551 TLADMAAQWQEPANVESWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSLAKWQEEAQLAE 608 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 I I R +D E+ S + + R L F + L GLN+G +P Sbjct: 609 FDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFP 666 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ N+ Sbjct: 667 RNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIGRDIRNDAEFAP 724 Query: 713 SRWLQRL 719 S + L Sbjct: 725 SSLISEL 731 >gi|5853098|gb|AAD54314.1|AF176618_1 RecC1004 [Escherichia coli] Length = 1121 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 113/1086 (10%), Positives = 254/1086 (23%), Gaps = 166/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDKNVSASV 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FA--GPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 709 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 710 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 769 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 770 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 829 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 830 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 889 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 890 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 937 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 938 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 981 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 982 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIE 1024 Query: 1000 LLQNGE 1005 + G Sbjct: 1025 GYREGM 1030 >gi|156932702|ref|YP_001436618.1| exonuclease V subunit gamma [Cronobacter sakazakii ATCC BAA-894] gi|156530956|gb|ABU75782.1| hypothetical protein ESA_00487 [Cronobacter sakazakii ATCC BAA-894] Length = 1123 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 104/975 (10%), Positives = 241/975 (24%), Gaps = 124/975 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ A++ + + DP P + V + Q L+ + G + I Sbjct: 11 DVLEAIMEFIVEQQPLPDPFEPE-----IVLVQSTGMAQWLQMSLAQKFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L +L+ + L Sbjct: 63 PLPASFIWDMFVRVLRDIPQESAFTKQNMSWKLMKLLPGM----LTLPDFDMLRHYLHDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W A L A T Sbjct: 119 EDKRKLFQLASRVADLYDQYLVYRPEWLTRWEAGDVVDGLGEPQRWQAPLWRALVEHTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + +R + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFIRTLETAESRPEGLPARVFICGISALPPVYLQALQALGKHIDVH 237 Query: 257 IVLPGLDCHIPTAIWN-------------------TITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + T + T+ Q Sbjct: 238 LLFTNPCRYYWGDIQDPAFLARLLSRKRKLHAKEGTAPLFKDSETAPALFNEEGEQEVGN 297 Query: 298 KLLDFLDIKREDVKRL---------------GNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ + + Sbjct: 298 PLLASWGKLGRDYTYLLSGLERFEEMDVFVDLEPDNLLHSLQFDLLELRNQAQAGVTLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FERSDGKRLLDPDDRSISVHVCHSPQREVEILHDQLLQMLEADPQLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS +LL+ + L++ P Sbjct: 418 YSPFIQAVFGSASQERYLPFAISDRRARQAHPALQAFITLLSLPDSRFVSEDVLALLEVP 477 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 A+F E+ L + + +R + ++ +L + Sbjct: 478 SLAARFNISEEGLRFLRQWVNESGVRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 H S + + L + + L+ + +++W + L + Sbjct: 538 ESHLGEWQSVLPYDESSGLIAELVGHLAELLMQLNLWRKGLSQARPLAEWLPVCREMLDS 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + L E + ++ + I + D + +++D E + + Sbjct: 598 FFAPDAETEAALALIE--QQWQAIIEQGISAHYEDEVPLTLLRDELAKMLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGT-RHLIYTRSLRENNIPTIASR---------WLQRLLVLGGTDFFDNLKK 733 E + L + R + +L + L G + + + Sbjct: 713 RYLFLEALISAQQQLYISYIGRSVQDNSEKYPSVLVQELVDYLAQSHYLPGDEALNCDES 772 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE------------------- 774 + R T +P A+ + SE Sbjct: 773 AKKVKAHLMRLYPRTPFDAENFQPARETQSYAREWLPAASEQGEAHPEFIKPLTPVTLEE 832 Query: 775 -----IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRIN 825 ++ P + + LK++F + PD +H L Sbjct: 833 LPFEQFQRFWRHPVRAFFQLRLKVNFRTEESELPDAEPFTLDSLGRYHMNQQLLNTLVEQ 892 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 ++ + + + ++ L + Sbjct: 893 QDPEALYRRYRAAGE--LPYGAFGELFWESQLQEMQALAERVLA---ERDGG-------E 940 Query: 886 PAKMAIESIGIHLTG 900 ++A+E + +TG Sbjct: 941 SQEIALELGNVEMTG 955 >gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] Length = 921 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 83/706 (11%), Positives = 190/706 (26%), Gaps = 75/706 (10%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 W + + +++ S + +LL + ++ +S E RS+ + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR------MSLD 383 P V + + E IA LR + Sbjct: 380 LR------------------PRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADG 421 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 +A++ A + L GI ++ L + + + ++L + Sbjct: 422 VKPPTAAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAG 481 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 A ++ P + G + + AL L + S + + + + + Sbjct: 482 AAAMRVLTGPRWRLGARDLAAL-WRRALTLSGESPSTASPESIAMAASADADNPCLADAI 540 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 P S L + L + + + D C Sbjct: 541 SDPGSAEGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVD-------CEVR 593 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPK 621 + + + +++ S A + ++D+ + +G Sbjct: 594 ASAPVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAEL 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + +L ++ L + + + L+ GV+P +++ +L+ Sbjct: 654 TVACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDP 699 >gi|293412167|ref|ZP_06654890.1| exodeoxyribonuclease V [Escherichia coli B354] gi|291468938|gb|EFF11429.1| exodeoxyribonuclease V [Escherichia coli B354] Length = 1122 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 113/1086 (10%), Positives = 258/1086 (23%), Gaps = 165/1086 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D W L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDW--LAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 +L + + + I G + P + + + H Sbjct: 177 HQLGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP---------------PDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENCAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + + + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E + L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + G+ L ++ P P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 T +++ P + + L+++F + PD G + I +L+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 826 KNTPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ E + D +++ + Q Sbjct: 891 QDDAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG------- 938 Query: 885 IPAKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSL 939 ++ + G+ +TG G P + + QL L Sbjct: 939 QSMEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWL 982 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVT 999 E A + D + +E++L L +++ Sbjct: 983 EHLVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLID 1025 Query: 1000 LLQNGE 1005 + G Sbjct: 1026 GYREGM 1031 >gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 1115 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 95/864 (10%), Positives = 191/864 (22%), Gaps = 86/864 (9%) Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADI--IDIIETEEKKWEDLHALKNEKYGMWW 181 D + L LA L + + ++ W+ + L + + Sbjct: 298 GDDDAKARKAHFVDLVARMGQVKGLAGELGGLAWLPRMDNHNDAWQMVLHLSHVLPLLAA 357 Query: 182 LLAADF----LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 L F L S+ L L + EH I+I Sbjct: 358 CLLLVFERRSLVDHSQVALSALDALGEDDEPTELALRLDYSIEH--------ILIDEFQD 409 Query: 238 SIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + L+S + + D + Sbjct: 410 TAINQYNLVSKLTRGWGQHNALNPAAPRTLFIVGDGMQSIYGFRNANVGLFLKARQEGFN 469 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 Q + + D ++ + +D + Sbjct: 470 GVTLQALSLRCNFRSEQGIVDWVNDSFRDAFPAEDNVYRGRVSF----TDAIAVKPAGAE 525 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408 + F E+E + D N A++ R + L + Sbjct: 526 LAVSLNGFWGEQ----AKEQEAQWLVEQVALGLADPNLGSIAILGRSRPQLAPILELLRQ 581 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 I L+ + L +L A+ D +A +++ P + Sbjct: 582 RDIPFASQEMDALAGSPAIVDLMTLCRALVNPGDRVAWYAVLRAPWCALNLADMKCLADS 641 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 + L A K +++ ++ + Sbjct: 642 AQDPRWQNVYGALCN-----RELPAGLSAEGKQRLLHVGQCLLWAQQRRDRLG-----LR 691 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 I L + ++D + L + E + L W E+ L + Sbjct: 692 AWIEQLWLHLGGPACFTQQRFLADAERFL--SLLQLADAEGKGLNIDWLEQRISRLYASG 749 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ LI + + IL E + + Sbjct: 750 DAPDARLQVMTLHKSKGLEFDWVLIPALARATRGDSRD---ILLWDEHNSKTGELGFMLA 806 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 ++ K FL + + L+T + A + + Sbjct: 807 ADDHSDDKTPGLYNFLKKQRKEKSRLET-------TRLLYVGATRAVKKLTLSACLGGGE 859 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 F W +P + Sbjct: 860 DAGPQD----------EPEFKPPGDGALLAPIWATFERQAVVHVPMTSVQPQSKISRGLL 909 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S L P + + GT+ H ++ +L + Sbjct: 910 RLSQSP-ATLPLMPKDSPQGANIPDPALNWLD-----RYVGTVIHEVLEQL--SLLASLP 961 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886 E+ + ++ L S L E + S + + Sbjct: 962 DELPVRLAELARHSLSSMGLAEEQLEAAFGRVSHAVASTLADESGGRWVLSAQHAQAHSE 1021 Query: 887 AKMAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDN------PKKETAQKL-IDPQLS 938 + I+ G DR + + G I DYK+ + QLS Sbjct: 1022 LTLTIQEAGQPRDIVIDRTFVDRDTGIRWIIDYKSSTPEAGVSAASFLQVEAGRYKNQLS 1081 Query: 939 LEAAALKAGSFSQIDCRKVANLFY 962 + S+I V Y Sbjct: 1082 CY-----RDAMSEIGPEPVRCALY 1100 >gi|168231090|ref|ZP_02656148.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472348|ref|ZP_03078332.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458712|gb|EDX47551.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334482|gb|EDZ21246.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1123 Score = 110 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 242/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ KL D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLP----KLLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] Length = 1174 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 101/912 (11%), Positives = 211/912 (23%), Gaps = 122/912 (13%) Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A A +D + E D LK + L A +I S + A Sbjct: 314 APADARYLDRMAEEAVALAD--RLKAVEIASNTLDALRLFEIFSFVYLSEKRGEGALDFT 371 Query: 209 GYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVAN--------H 252 + + H + G I++ + + ++ +++ Sbjct: 372 DLITYTKKLLDDPTHALWVLHKLDGGLDHILVDEAQDTSEEQWIIVDALSSDFFSGEGVT 431 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH--------PQY--SLAKLLDF 302 + D + + + H PQ S L + Sbjct: 432 RTIRTLFAVGDEKQSIYGFQGADPREFLKARGQISQRAHDGGANLVEPQLIDSWRSLPEI 491 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 L K + + + + + ++ D Sbjct: 492 LGFVDAVFKADDVQHALNFSSDPIQHIARRSDASGVVELWPVVRPMAAVETTADDDDEQA 551 Query: 363 EADNE------REEAISIAIALR----------------MSLDENKKKSALITADRNLAR 400 D+ + A IA +R L+ +L Sbjct: 552 ALDDPGRNPPSKRLAKQIAATIRSEITAGRTIYDKALKRRRTVHAGDVLILVRKRDHLFE 611 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + EL G+ + + + L + L +LL + D +++A +++ PL Sbjct: 612 HIIRELKIAGVAVSGADRLKLGDHIAFQDLRALLRVCLQPMDALSLACVLRSPLCDLSEQ 671 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 + + + + + + L+ Sbjct: 672 DLFDLAHDRQ--MPLWSALLHHPATEGPVHDARIFLLWAQKAAWQLTAFDFLARVLNRRD 729 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + +T L + L++ V + L E + +EE Sbjct: 730 FAGRSVRQRFLTRLGDECEDVLDETLALALKGEGSGAVALSACLDLFEFQASQIKREQEE 789 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 G + TV + I+ Sbjct: 790 GGHAVRVM----------------------------TVHGSKGLEAPWVIVPIGPQYGAR 821 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 + LIL G + ++ K + E+ + +R + Sbjct: 822 KEDLILTGEDGQMYLCAGGKKADTAVTADIRDGRALREEQESL-RLFYVALTRSRDRLTV 880 Query: 701 RSLRENNIPT---------IASRWLQRLLVLGGTDFFDNLKKRGQCY-LDWTRKLDYTTK 750 + T +AS RL N G+ Y R ++ Sbjct: 881 CAYTGTKPATTGNFPSWYDLASDAFDRLETTSEVMPLVNPFDDGEYYNEALVRVHGQHSE 940 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--- 807 + P + + + A + + + P Sbjct: 941 ALTAQARLREPEVPLPDFALAMVTHDDIET--ERWAAISQMGDEDRTETEIAPSPLQTLG 998 Query: 808 ------RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 RG L H + L I + ++ Sbjct: 999 SLGRYRRGNLIHKLFEIL--------PDIAPDNRMAIAQRYLTRQADLTDAQREEMTDAV 1050 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSGFVDITDYK 919 + E V + ++ + G I L+G DR+ + V I DYK Sbjct: 1051 MTVLTDARFAEAFGPQSRP-EVALAGQVGVNPRGEAIMLSGRIDRLVVTDD-RVVIIDYK 1108 Query: 920 TGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 + E A Q++ A L+ R V ++ + Sbjct: 1109 SNRPAPDRAEDAAVAYQRQMAGYVALLRQV----YPDRAVEAALLW--TDGPRLTPMPET 1162 Query: 978 KKKYSADELSEK 989 + +E+ + Sbjct: 1163 LVQLRLEEILSR 1174 >gi|16761772|ref|NP_457389.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143256|ref|NP_806598.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213428017|ref|ZP_03360767.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289825127|ref|ZP_06544462.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25289147|pir||AD0865 exonuclease V chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504074|emb|CAD02820.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29138889|gb|AAO70458.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1123 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|283835411|ref|ZP_06355152.1| exodeoxyribonuclease V, gamma subunit [Citrobacter youngae ATCC 29220] gi|291068583|gb|EFE06692.1| exodeoxyribonuclease V, gamma subunit [Citrobacter youngae ATCC 29220] Length = 1122 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 103/942 (10%), Positives = 232/942 (24%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLAQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ L D L+ Sbjct: 63 PLPASFIWDMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDNDDFALLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGRLIDGLGESQVWQAPLWKALVEYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H + Sbjct: 179 LGQPRW-HRANLYQRFIQTLESASECPPGLPSRVFICGISALPPVYLQALQALGKHIDIH 237 Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + W + + + S Q Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLLARQRRHSFEERHMPLFRDSQKAEGLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 +L D L + + + Sbjct: 298 PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQLDILELESRAVAGVTLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + V + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDANDTSVTFHVCHSPQREVEILHDRLLAMLEADPMLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFNIDEEGLRYLRLWVNESGIRWGIDDDNVRELELPPTGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIITEGLGAEYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDESLTCDQ 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASLSGKAHTDFVQPLPFEMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 + +++ P + + L++ + G + + +L+ + + Sbjct: 832 LTLETLQRFWAHPVRAFFQMRLQVNFRSEESEIPETEPFVLEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 N E + + E L + L +I Sbjct: 892 NDAERLFRRFRAAGALPYGSFGEILWDTQRQEMQLLAERIIA 933 >gi|197264701|ref|ZP_03164775.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242903|ref|YP_002216968.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207858259|ref|YP_002244910.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197242956|gb|EDY25576.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197937419|gb|ACH74752.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206710062|emb|CAR34417.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624735|gb|EGE31080.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1123 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE] gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE] Length = 1164 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 83/779 (10%), Positives = 190/779 (24%), Gaps = 85/779 (10%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 65 GTGQVAPEQVLGLTFTNKAAGELAERVRKALVAAGVTDPDVIDPDNPPGEPSISTYHAFA 124 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 125 GRLLTEHGLRIGLEPTTRLLADATRYQLAARVLREA--------PGPYPALTRSFPTLVS 176 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195 +L + + + ++L E + A L ++ + Sbjct: 177 DLLALDAELAEHLVRPDELARHDTELLGTLAGAKLTNADLRKVPETVEARRELLGLTRRY 236 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E + AL R E L++ +++ + A L+S + Sbjct: 237 REAKRSRDLLDFGDQIALSAELALTRPEVGTLLRDEFRVVLLDEYQDTSVAQRLLLSALF 296 Query: 251 NHPNG----AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 G V D W + + + + ++ + L Sbjct: 297 GSGPGGDTGHAVTAVGDPCQAIYGWRGASVANLDDFPQHFPHADGTPATRYSL------- 349 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 S ++ + D + + + + V Sbjct: 350 ----------SENRRSGGRLLHLANGLADPLRAMHEGVEALRPAPGAERDGTVRCALLRT 399 Query: 367 EREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 EE + +L + + A++ R++ L + +++ L Sbjct: 400 HAEEIDWLGDSLAHLVRTGTPPGEIAVLCRTAGDFPRIQAALVDRDVPVEVVGLSGLLHL 459 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++ + ++ L+ P + G + L + L + + ++ Sbjct: 460 PEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHHASPDDDTDP 519 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L V + + S ++ + L T + Sbjct: 520 DRRLAEAVEGVDPAEVISLADALDTFLDSGGHQDDQLPFSAEARIRYARLATELRELRRS 579 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + + ++ T V L E + + A Sbjct: 580 LADPLMDVLHRVLSTTGLEVELSASPHALAARRRETLANFLDVAAGFAAVDGEATLLAFL 639 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + +T+ +L +S+ L +D + + GL G +P ++ + Sbjct: 640 GFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSTRSREAWT 699 Query: 665 SRVMQSDLNLK------------------------TAEKYIGQAAHDFEMANGTRHLIY- 699 ++ L+ TA ++ + + R L+ Sbjct: 700 AQSKVLPHALRGDAATLPDVCSWDAKGLKAFKDEMTAHQHTEELRLGYVTFTRPRRLLLG 759 Query: 700 --TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 P S +L L + + D + + Sbjct: 760 SGHWWGPSQKKPRGPSAFLDALYDHCAAGHGEIEVWADEPGPDEENPVLREREAEQAWP 818 Score = 65.7 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 96/832 (11%), Positives = 219/832 (26%), Gaps = 65/832 (7%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 AD L+ + A + AL+R AE + + + A Sbjct: 366 LADPLRAMHEGVEALRPAPGAERDGTVRCALLRTHAEEIDWLGDSLAHLVRTGTPPGEIA 425 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L T + P L D + + + + A L+ L Sbjct: 426 VLCRTAGDFPRIQAALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLL 485 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI----------- 352 R + R +V S D R + +E P Sbjct: 486 TGPRWRIGPRDLALLGRRARLLVHHASPDDDTDPDRRLAEAVEGVDPAEVISLADALDTF 545 Query: 353 --QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 D L + R +A LR + +++EL+ Sbjct: 546 LDSGGHQDDQLPFSAEARIRYARLATELRELRRSLADPLMDVLHRVLSTTGLEVELSASP 605 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + L+ + + A+ +A ++ + L +N Sbjct: 606 HALAARRRETLAN---FLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGENT 662 Query: 471 LEL-VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 +++ A + +D++ + LV + + ++ L + A L D Sbjct: 663 VKVLTAHKSKGLEWDVVAVPGLVTGQFPSTRSREAWTAQSKVLPHALRGDAATLPDVCSW 722 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 L +K + + + + H P+ +++ + S+ Sbjct: 723 DAKGLKAFKDEMTAHQHTEELRLGYVTFTRPRRLLLGSGHWWGPS---QKKPRGPSAFLD 779 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + W D + ++ + + + L + Sbjct: 780 ALYDHCAAGHGEIEVWADEPGPDEENPVLREREAEQAWPLPLDETALARRRAARDTVLAH 839 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---- 705 + + + ++ + ++ A + + E Sbjct: 840 LDALAAAPDPEAEAEAQAGPPEHGEPLYDEEFPYDAEEPPYDEDPPYDEEPPYDEEPPGE 899 Query: 706 ----NNIPTIASRWLQRLLVLGGTDFFDNLK----KRGQCYLDWTRKLDYTTKQPHYKRP 757 + P A R R+ L + + + W R LD + +R Sbjct: 900 QLFPDGGPIRADRAPGRVPHLPAARVPSDPPDLTPEEARTLASWDRDLDALAGE--LRRA 957 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + P + S +++ L +DP AR + + P RGT FH + Sbjct: 958 RATVHDVVVPASLSATQLLHLADDPDGF-ARELARPMPRPPQ----PAARRGTRFHAWVE 1012 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 ++ + + + R ++ +F E + Sbjct: 1013 SRFEELP----------LPMLGPDELPGGDDGDAEIADERD-LAELKEAFERTEYARR-- 1059 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937 V P ++ + + G D + +I D+KT + + QL Sbjct: 1060 -TPYRVETPFQIVLAGR--VIRGRIDAVYRTGD-TYEIVDWKTARHRTADP------LQL 1109 Query: 938 SLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 ++ A + V ++ ++ + + L ++ Sbjct: 1110 AVYRLAWAE--LHGLAPEAV-GATFLYVRTGETVRPTGLPGRAELERLLLDE 1158 >gi|270307980|ref|YP_003330038.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS] gi|270153872|gb|ACZ61710.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS] Length = 379 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 34/265 (12%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S+S+I Q ++ P I L + GT H+ + ++ Sbjct: 1 MRPLSYSQIDQYLSCPLKYRFLYIDGLKPLEK-----GYFSFGTTLHDCAEHFFRIKVPP 55 Query: 827 NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 M + H+ E + +R L +I F + V Sbjct: 56 PP--SLEKMLEYYRLHWRSEGYESVEAEENYRQLGKEILAEFCRIHSAD--FHMPLAVEY 111 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAAL 944 + ++ G+ LTG DR+D L SG + I DYK+ E Q + QLSL A+ Sbjct: 112 QYTVNLD--GVKLTGKIDRVDKLLSGELCIVDYKSNKDLFSSEYVQN--NLQLSLYQLAV 167 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK-KYSADELSEKSLKNLIEIVTLLQN 1003 + F V L L+ + C + K+ A +L + + + + + Sbjct: 168 EQIWF-----LPVGELCLYHLRSNTAMRCSSRSKEVITDARQLVLEVAEKIKKAI--FPA 220 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028 E F ++ HL Sbjct: 221 CENGFCP-----------CDFAHLC 234 >gi|261868486|ref|YP_003256408.1| exodeoxyribonuclease V subunit gamma [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413818|gb|ACX83189.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1138 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 99/958 (10%), Positives = 226/958 (23%), Gaps = 129/958 (13%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 V + Q L+ + G + + + A+ LL + + + Sbjct: 45 LVQSPGMAQWLQLQIAGQKGIAANFA---FPMPASFIWQLYAENLLDVAQSNQFNKNAMM 101 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW--- 166 L RLI + D ++ L S LA +AD+ D W Sbjct: 102 WRLVRLIPQYLQ--QDALRPLRHYLAYSAQSEQFKLYQLAGKIADLFDQYLVYRPDWISA 159 Query: 167 ------EDLHALKNEKYGMWWLLAADFL-------KIASKYWTERLVELNASSPVGYQIA 213 +D+ + + + I + + V ++ Sbjct: 160 WEHQQDDDIRRQIESQLSLNNERLLAQITQNIAWQGILWRALVRAVKADTGLDLVQHRAH 219 Query: 214 LMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 L + E L + + I G A + ++ + + + Sbjct: 220 LHQLLLEKLRENRPHFLPERLFIFGIPALPKAYLEIFQAISQYCDVHLFFNNPCEEYWGD 279 Query: 270 I-----------------WNTITEKSTNITSSNTT--------YSTHPQYSLAKLLDFLD 304 I +N + + + Q L + Sbjct: 280 IVDPKFVEKLALRTCTDYFNQADKPLLSAEQATQAQQHWELTYAQEKLQVGNPLLASWGK 339 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCFSDVALIE 363 R+ L + + I+ L P N ++ + Sbjct: 340 PGRDFAYLLAQLEPNDISAYVEITPHNLLSQIQHRILHLTPNGTTPLNYRENDRTLTFHS 399 Query: 364 ADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFG------INI 413 + E + L L D K ++ AD + + I Sbjct: 400 CHSLMREVEVLQDYLLHLLQQEPDLTPKDIIVMVADIDKYTPYIRAVFGQNVTLQTAIPF 459 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 IS + + +LL + L+ P + F L + Sbjct: 460 SISDNKLSENNVIIAGFLTLLQLQESTFSAEDVLALLDVPAIRQRFN-IELQDLAQIRDW 518 Query: 474 VALRGNKNSYDIMDLKS-----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 V G + D + + L + Sbjct: 519 VKNAGVRFGLAKNDEAESNYNSWQAGLERMLLGYALREENGIWQDSLGLDNSFGLKGQLA 578 Query: 529 QCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + L + S+ W + + L++ + + Sbjct: 579 GQLSAFLAALFDWFQTLQNRYSVEQWQQHLLALTDKFFAATAETDETLFY------IKEV 632 Query: 588 FSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + E + + + +D++ +++ E + + L R + F + Sbjct: 633 IRQFAEQLAEVHFSDALGVDVVADVMNNALEENPNHYRFLAGRVNFCTLLPMRSIPFKVV 692 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 L G+N+G +P+ A N F + + + +L + R Sbjct: 693 CLLGMNDGEYPRQQAPNSFDLMQYHRLKGDRARRDDDRYL-FLEALLSAQDYLYISYIGR 751 Query: 705 E--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--------------- 747 +N S + +LL + G L W +L Sbjct: 752 SIADNQEREPSVLVSQLLDYIVENLPAENISVGN--LKWRERLVQQHGMTAFSRKNFEKN 809 Query: 748 --------TTKQPHYKRP----------KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + +P FS + + +P + + Sbjct: 810 DCTFMQSFAQQWLPLANSQVNQTLQDFIQPMMADAEPENEIEFSRLVAFVKNPVKFFFEK 869 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFEKEN 847 L ++F + D + N + + + + + + ++ + Sbjct: 870 RLGVNFSEQEESIADSENF--ALDNALEKYAIHADLVEADEQQTDAFFARL---KVKGVL 924 Query: 848 LPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 I+ + F + + + + + L+G Sbjct: 925 PRGEFSAIYANQLLADVAEFKGKIADYVSQTPQSRFV----QFTVPTQEGDMTLSGNI 978 >gi|213585479|ref|ZP_03367305.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 1069 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|200387318|ref|ZP_03213930.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604416|gb|EDZ02961.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1123 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSYYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|167550132|ref|ZP_02343889.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197247868|ref|YP_002147904.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211571|gb|ACH48968.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205324810|gb|EDZ12649.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1123 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|300718154|ref|YP_003742957.1| exodeoxyribonuclease V gamma chain [Erwinia billingiae Eb661] gi|299063990|emb|CAX61110.1| Exodeoxyribonuclease V gamma chain [Erwinia billingiae Eb661] Length = 1122 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 101/943 (10%), Positives = 238/943 (25%), Gaps = 113/943 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 + V + Q L+ E G + I L +L + Sbjct: 34 VVLVQSPGMAQWLQMSLAEQFGIAANIA---FPLPATFIWDMFVRVLPGIPKESAFNKAS 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +L ++ + + + L+ LA +AD+ D +W Sbjct: 91 MSWKLMAILPAMLTRPEFTLLE----HYLTEDQDKRKLFQLASRVADLFDQYLVYRPEWL 146 Query: 168 DLHALK-NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 + L A +T L + +R + Sbjct: 147 NSWEKGQIIDGLGEAQQWQAPLWAALVEYTAELGQPEW-HRANLYARFIRKLESSNERPP 205 Query: 227 --KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-------------- 270 + I G + P + + + H + ++ H I Sbjct: 206 NLPDRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRHYWGDIQDYAFLAKLQSRHR 265 Query: 271 -----------WNTITEKSTNITSSNTTYSTHPQYSLAKL-------LDFLDIKREDVKR 312 + + + S S KL L ++ + D Sbjct: 266 QHFQRQSESPLFRQADASALFNDAGEQQLSNPLLASWGKLGRDNLFLLAQMECQEIDAFV 325 Query: 313 LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + + + + +N + ++L + + E Sbjct: 326 DIEPTTLLQTVQRDLLELEDNAVIGLQQNEWETSTAKRRLDPADRSISLHLCHSPQREVE 385 Query: 373 SIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLST 423 + L + ++ ++ ++ AD + + + IS Sbjct: 386 VLQDRLLQMMADDPSLSPREVIVMVADIDAYTPFIQAVFGNAPAGRYLPFAISDRRASQA 445 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKN 481 SLL+ + L+ P F E+ L R + +E +R + Sbjct: 446 HPALQAFISLLSLPDSRFTSEEVLALLDVPALANRFAIDEEGLKRLRRWVEESGIRWGLD 505 Query: 482 SYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + DL+ + + + L+ + + L Sbjct: 506 DDTVRDLELPPTGQHTWQFGLTRMLLGYAMNSESGHWQGVLPYDESSGLIAELAGNLAEL 565 Query: 535 VTYKTNKNSTC-GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 +T + + + +W L T LQ+ + L E + + I+ Sbjct: 566 LTRLRHWRTLLNTTQPLEEWLPLCRTLLQDFFAGDADTEAALALIE--EQWQQAINYGIQ 623 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 D + +D E + + + + R + F + L G+N+GV Sbjct: 624 AQYQQAVPLSLLRDELASRLDQERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGV 682 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711 +P+ F Q ++ + + + L + R +N Sbjct: 683 YPRTLPPLGFDLMSQQPKKGDRSRRDDDRYL-FLEAINSAQQQLYISYIGRTIQDNSERF 741 Query: 712 ASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYLDWTRKLDY 747 S + L+ + + + + Sbjct: 742 PSVLVSELVEYISQSFCLPEDQSLDVDKSAEAVIRHLHHLHSRMPFAAENFSPQAEFKSF 801 Query: 748 TTKQPHYKRPKPFPPLEAQPR-------TYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + P +F ++ + P + + L + FI Sbjct: 802 AAEWLPAANASGVPHPAFMQPLPVLEIAELNFEQLVRFWRHPVRAFFSQRLGVSFIAEEA 861 Query: 801 KDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 PD + + T+L+ I++ E + ++ + ++ W Sbjct: 862 GLPDAEPFTLDNLSRYQVNTQLLNTLIDEQPSEPLYARQRAS----GNLPYGAYGELFWL 917 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 +++ + ++ + ++A+ GI L G Sbjct: 918 EQQEEMAE-LANRVREQRAGA------VSWEIALPIGGIQLNG 953 >gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans PD1222] Length = 1124 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 97/968 (10%), Positives = 231/968 (23%), Gaps = 104/968 (10%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + L P + L + P + L F + ++P Sbjct: 179 LDAFLAGL-------RGFEAPADRDALWAACGLAPGEDMQSLLAECFAAGATVIAALVP- 230 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 L ++ A L N P +LE L + D +P L Sbjct: 231 -HLLKSGANDQKAAAKLAPGNWVQPGPAELAILESVLLTGASAKEPFTAKYDSFPTKALR 289 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 L +LA +++ +E + L + F + Sbjct: 290 NGPCA----ELLDDLAILMERVEAARPRRIALAHAERTL------ALNRFGHAFLNRYRA 339 Query: 198 RLVELNASSPVGYQIALMRAEAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTV 249 + R +E+ + G I++ + + PA +++ + Sbjct: 340 QKAAHGRLDFDDLIDRTARLLSENSMAQWVLFRLDGGIDHILVDEAQDTSPAQWQVIERL 399 Query: 250 AN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT------------YS 289 + + D + + Sbjct: 400 TDEFTSGQGARDQTRSLFVVGDPKQSIYSFQGADIAVFEARRTGFAQAFDAVQEPMQVLE 459 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 + + + L + + + R+ + + E Sbjct: 460 LRHSFRSSTAILALVDQVFAGDAARGLGDPPQHRAFRTDMPGRVDLWPAIPKPEKPEPGD 519 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIAL----------RMSLDENKKKSALITADRNLA 399 R A ++ L R+ L+ L Sbjct: 520 WTDPVDLPAENSETVQLARAVARAVGEMLGQPIFDAKTGRLRRIRAGDVLILVQRRSELF 579 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 + L + + + + L+ + + +LL+ + D +++A ++ PL Sbjct: 580 AEIIAALKAANLPVAGADRLKLAGEMAVQDIRALLSVLATPEDDLSLAACLRSPLFDLSE 639 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 E Y A R + S+ ++ L T + + + + Sbjct: 640 EELYRLAAGRKRGQYLWRRLRESHHRHAVEVLADLMGQTGFMRPYDLIQRLLIRHGGR-- 697 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + ++ + P ++ + S T L + D+ Sbjct: 698 -----ERLVARLGPEAQDGIDELLSQALSYESSETPSLTGFLVWLTGDDVEVRRQPGSAG 752 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 +G+ L + + + ++ ++ + ++ L L Sbjct: 753 DGEGLIR----------VMTVHGSKGLESPIVIMPDAAKRKPPREAPVLPGPDGLSLW-- 800 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 + ++ ++T + + + + Sbjct: 801 ------------------RGRKGERPDPVEELAAMQTERQLQERKRLLYVGLTRAESWLI 842 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + E + + + L + D+ P + Sbjct: 843 VAAAGETGAGEDSWHAMVEAGMGRADLTETRLPAPWGGEIRRLSFGDWPETAPDAVLAER 902 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 P E + P A A K+ GT H ++ L Sbjct: 903 PLPAEPDWLRAPPPPAPGKVR-PVAATALGGAKVIGAAGEGDAEAAMLFGTRLHLLLEHL 961 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + ++ E P+ + + + S Sbjct: 962 PGRDPADWPELARDVLADA-----EGGLPGPNELAALLTEARAVIEAPDLAQVFALSDTA 1016 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQL 937 ++ + + IG +TG DR+ + G + DYK+ + I Q+ Sbjct: 1017 EVLAEVALAAPVPGIG-TMTGAVDRLVVEP-GRILAVDYKSNREVPDTPDAVPLGILRQM 1074 Query: 938 SLEAAALK 945 + AAL+ Sbjct: 1075 AAYRAALR 1082 >gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 1184 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 106/917 (11%), Positives = 236/917 (25%), Gaps = 92/917 (10%) Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 LP + + A + V+ R + ARL L +L + + Sbjct: 179 LPQPRPAALEPKRVALAIARVQAEAEVAVARDGRSVFRARLALAECERLLERVAAASAGD 238 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS 192 P P SP LA L + E + L A + + L Sbjct: 239 PGYAP-SPGEVARLA--LPRNGRALAGEGCEGYRTALQAYVDACADAHAVPVHGLLDALL 295 Query: 193 KYWTERLVE-------LNASSPVGYQIALMRAEAEHLMK--GTKGPIIIAGSTGSIPATA 243 + + R E ++ L+R E + +++ + P Sbjct: 296 RGFGRRYAEAKQRASAVDFEDLELRANRLLREHEELRARYAERFVHVMVDEFQDTNPLQL 355 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L+ +A G + D + + Sbjct: 356 ELLERIA----GERLFTVGDELQSIYGFRHADVELFRRRRKALAEHGAAASLATNFRSHA 411 Query: 304 DI----KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 +I R G + + + + N + Sbjct: 412 EILETLNVAFAPRFGESFTPLVAGREERADALPVAGPRVELLVVDVRADWANAGLLPEGM 471 Query: 360 ALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISA 417 A EA ++A +R LD ++ L+ + LT + + Sbjct: 472 AAPAPLWRVAEARALAARVRELLDGGRRAGDVVLLLRATGDLAVYERALTDLAVPTYVIG 531 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L + L + D +A+ +L+ PL A Sbjct: 532 GRGYWAQQQVRDLVAYLGVLANPRDGVALQSLLASPLVGLSSDGLVQVVAAARASRREGE 591 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ--SRLSEEDKELAVLLVDHILQCITPLV 535 + + + + L+ + + + L+D +L V Sbjct: 592 PPDPWWVLTEGRELLARLAPDDAERVEELRAWLPAERATAPRHSLESLLDRVLDQTGYDV 651 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + ++ +L D + + E G L S + E+ Sbjct: 652 ELLRLPSGARRLANVRKLMRLAREFEAEEGRDLRGFVDMVM--ELGGGLESSREQDRESE 709 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + ++ A++ + ++T P + + S ++ G+ Sbjct: 710 APVEGEALDAVRLMTIHRAKGLEFPVVCVADLGRGSPAAGSDVVRVGRDGRVGIKLKTLD 769 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP------ 709 + + R + +++ + M LI + ++ P Sbjct: 770 GSAPRPALAYRPIGEARARAESDEEARL--YYVAMTRAREQLILSGAVPTEPWPEPKLGA 827 Query: 710 ----TIASRWLQRLLVLGGTDFFD-------------NLKKRGQCYLDWT---------R 743 I ++ + L D ++ + G L + R Sbjct: 828 PAITWIGPAFVPEIARLAAPDGEPSGVVSNEGQAVAYSVVRPGAAALAPSLAGSEGDRGR 887 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRT-----------YSFSEIKQLINDPYAVYARRILK 792 L + ++ R +P S++ + Y Y R+L+ Sbjct: 888 VLSHARERTPAGRRAHVRARATRPIGDGGGTAPPVATLSYTSLADHARCGYRFYLERVLR 947 Query: 793 LDFIPHFKK------DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 L + + + RG + H ++ ++ + P+ + + + + + Sbjct: 948 LPPVDDAPRGRGGRHGLAASTRGVIAHALLEQV--DFVRAQPPDAELVRRAAVRAGADPT 1005 Query: 847 NLPPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + FL + +S + A++ + L G D I Sbjct: 1006 -------AEELDEIRGLVVRFLASPLRERLASARDLRREQAFSFALDELP--LVGVFDAI 1056 Query: 906 DLLKSGFVDITDYKTGD 922 + I D+K+ Sbjct: 1057 AR-EGNRTLIVDWKSDR 1072 >gi|194442490|ref|YP_002042244.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401153|gb|ACF61375.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1123 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|296534678|ref|ZP_06897076.1| double-strand break repair protein AddB [Roseomonas cervicalis ATCC 49957] gi|296264995|gb|EFH11222.1| double-strand break repair protein AddB [Roseomonas cervicalis ATCC 49957] Length = 366 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 10/347 (2%) Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + L E + V+ +L + + + + Sbjct: 1 RALRGPRPAPGLEGLRARVAEALRREKDAPLLATVEKLLSALEAALQGFSELPDSPARPP 60 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDI 608 + L+ EEG+ L+ S + + + W + Sbjct: 61 AELLEAHLNAAEALAAARDRPGGLRLYAGEEGEPLAVFLSTLPPALRELPPMSPASWPAL 120 Query: 609 ITRLIDGETVK-------PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 L++G + + + ILG LE+RL +FD +LG L EGVWP++T Sbjct: 121 FDVLLEGPAAPGVRIGRGREYAQHPRIAILGLLEARLQDFDLAVLGSLEEGVWPQSTDPG 180 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDF-EMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 P++SR M+ D L E IG+ A DF A ++ R+ + PT+ SRWL RL Sbjct: 181 PWMSRPMRGDFGLPEPEARIGRVAADFMLAAASAPRVVLARARKRAGAPTVPSRWLTRLE 240 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 G R + LDW +LD + RP P PP E +PR S +E+ L+ Sbjct: 241 TFLGGQAPGLGLPR-ERALDWASRLDMPEVVKPWPRPAPAPPPEDRPREISVTEVADLMA 299 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 DPY YARR+L+L + + +D G + H ++ + ++ + Sbjct: 300 DPYGFYARRVLRLLPLEPLDAEVGASDYGQIVHQVMADWTRRLGDAP 346 >gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 771 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 104/778 (13%), Positives = 216/778 (27%), Gaps = 120/778 (15%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R G + +P + + + + Sbjct: 70 SQILCVTFTNKAAREMRERVAGHLGPGAEGIPWLGTFHSICAKM---------------- 113 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + L W A+ LA +ID + Sbjct: 114 -LRRHAELVGLEQNYTIIDTDDQLRLLKQ--LINDNGVDEKRWPARQLAGLIDRWKNRGL 170 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 EDL + E Y A+F + + +RL LNA + ++ +H Sbjct: 171 NPEDLDPAECEAYVNG--RGAEF----YRLYQDRLKALNACDFGDLMLHMLNIFRKHTDV 224 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + +A V+ D W + Sbjct: 225 LADYQQRFKYILVDEYQDTNAVQYLWLRLLAQSHKNICVV--GDDDQSIYSWRGAEVANI 282 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + + R Sbjct: 283 LRFEKDF-----PGAHVVRLEQNYRSTPHILGAASGLIRANSQR---------------- 321 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRN 397 E + V +I + EEA ++ + E + A++ + Sbjct: 322 -----HEKTLWTEVNGGDKVRVIGVWDAPEEARRVSEEIERLEREGAPLDQVAILVRAQY 376 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 R + + GIN I G + L I + D +A + P Sbjct: 377 QTREFEDRFIQTGINYRIIGGFRFYERAEIRDALAYLRVIAQPQDDLAFERIYNQP---- 432 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 L + L+++ +P + L D Sbjct: 433 ---------------------------KRGLGAKTLEKMHQHARRVGMPLAAASLELADS 465 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + L I L+ ++ SD +L + + + Sbjct: 466 DE---LPKRAANTIGSLMRSFLAWREASEQMTPSDLLRLV------LDESGYNDMLAADR 516 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E + S++ + ++++ ++ ++D + + ++ T+ I+ ++ Sbjct: 517 SAESAGRAENLSELARAMEEYE-TLGDFLEHVSLVMDND----RGDEEDTVTIMTIHAAK 571 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FD + G EGV+P A + + L + E+ A A R + Sbjct: 572 GLEFDHVFCVGWEEGVFPSQRAID---------EGGLASLEEERRLAYVAITRA-RRRCM 621 Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD--YTTKQP 752 I + R I SR+++ L +W+ D + Sbjct: 622 ILHAANRRIYGQWTSSIPSRFIEELPEEHIEQETTMTGGASLWRANWSENEDPFAHVARD 681 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 R + P + + ++ + +P A K + GT Sbjct: 682 RPDRAQARGPGWQRAVATGYEPRQKRVAEPGRSAASFAAKPRSDIAIGAMVEHKKFGT 739 >gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] Length = 1110 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 92/806 (11%), Positives = 197/806 (24%), Gaps = 93/806 (11%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L I + E NA + +RA + ++I + Sbjct: 357 LPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQPSDYALQLDEQIQHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ + +G + D + + Q + Sbjct: 417 IIQFHLIEKLITGWQPKDGRTLFLVGDPMQSIYRFRQAEVGLFLQVKNEGLGE--IQLTP 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + ++ + + +F + S + + + N Sbjct: 475 LILRNNFRSQKNLIDWF----------NQTFEPTFPKEENSHLGSISYSHSFATNNSINQ 524 Query: 357 SDVALIEA--DNEREEAISIAIALRMSL-DENKKKSALITADRNLARRVKLELTRFGINI 413 ++ N EA I ++ + +K A++ R+ + L I Sbjct: 525 KNINFYSLLNANALNEATQIVKIIQGCRSENPEKTIAILVRSRSQLIEITPALRSADIPF 584 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L+ + L SL A+ L D +A L++ P + + Sbjct: 585 HAVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSR------ 638 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 A + VL + N + D+ L ++ I + Sbjct: 639 YANDKPIWVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGG 698 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 +N + + +KL L+ + + + + I Sbjct: 699 PACL-SNSTELMNTQAYFQLLETLEN--DFTSERLTQKLNQLYAQIDTDAKNPIQIMTIH 755 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 ++ + ++ G +P+ + L L N LIL L Sbjct: 756 KAKGLEFD--------HVILPGLEKRPRSDDHDLLLWLERHTKAGNN--ELILAPLKAAS 805 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 + N + N + A + S Sbjct: 806 EKADPVYNYLKRIEKEKTTN--------EITRLLYVAATRAKE----------------S 841 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L L L +G ++ + Q +++ + Sbjct: 842 FHLLTSLNKEDPQSPIKLPPKGS-----FAEILWPVCQEAFEQSIIIFDDTLPSQKGGLK 896 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD--RGTLFHNIITELIKKRINKNTPEI 831 +++L +D + + L + G + H + + + + E Sbjct: 897 LLRRLTSDWAPPFILKTLPSAESKPLTPFTPASSKRLGIVIHETLERIANEGLESWDKER 956 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI--FVNIPAKM 889 K + P + + L + + P + Sbjct: 957 IENNKSFWQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPITL 1016 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK-------KETAQKLIDPQLSLEAA 942 +E I D + ++G I DYK+ + QL A Sbjct: 1017 -VEDKKIK-HFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEA-QLQQYA- 1072 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQK 968 +F +D R + Y L Q Sbjct: 1073 ----NAFHALDSRPIKLGLYFPLCQG 1094 >gi|157148366|ref|YP_001455685.1| exonuclease V subunit gamma [Citrobacter koseri ATCC BAA-895] gi|157085571|gb|ABV15249.1| hypothetical protein CKO_04188 [Citrobacter koseri ATCC BAA-895] Length = 1122 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 123/1075 (11%), Positives = 270/1075 (25%), Gaps = 143/1075 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + + DP P + V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERDRLDDPFEPE-----LVLVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + L+ Sbjct: 63 PLPASFIWDMFVRVLPDIPKESAFSKQNMSWKLMTLLPQLLEREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 ADKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGQMVDGLGEAQIWQAPLWKALVEYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ T + I G + P R + + H Sbjct: 179 LGQPCW-HRANVYQRFIQTLENATTSPTGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + N + S Q Sbjct: 238 LLFTNPCRYYWGDIRDPAWLAKLVARQRRHSFEERDLPLFRDNQRAGELFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKSFLPPDTSDMRNT 342 +L D L + N ++ I + Sbjct: 298 PMLASWGKLGRDYIYLLSELENTQELDAFVDIPPDNLLHNIQADILELESRAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + V + + E + L L+ + + ++ AD + Sbjct: 358 YARSDNKRLLDPNDASVTFHVCHSPQREVEILHDRLLAMLEADPTLMPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + F L + G + D +++ L L + + Sbjct: 478 VLAARFNINEEGLRYLRLWVNES-GIRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYA 536 Query: 514 EEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 E E + L+ + + + L+ + + +W + L Sbjct: 537 MESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQARPLEEWLPVCRDMLN 596 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L + + ++ ++ +E D + + +D E + + Sbjct: 597 DFFLPDAETEAA--MTLIEQQWQAIITEGLEAEYGDAVPLSLLRDELAQRLDQERISQRF 654 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 655 LAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRD 710 Query: 683 QAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNL 731 + F A + L + R +N S +Q L+ L G + + Sbjct: 711 DDRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDEELTSD 770 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARR 789 + + R P + + + + P Sbjct: 771 ESEARVKAHIARLHTRMPFDAQNYLPGEQQSYAREWLPAASQSGEAHSDFVQPLPYELPE 830 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 L L+ + F P R + + + L + ++ + Sbjct: 831 TLTLEKLQRFWAHPVRAFFQMRLQVNFRAEESEIPDTEPFILEGLTRYQLNQQLLNTLVE 890 Query: 850 PHIDIIWRHLFHKISH----SF--LEHEEKIQS----SIEKIFVNIPA---KMAIESIGI 896 + F +F + + + Q + I P ++ + G+ Sbjct: 891 EEDAGLLFRRFRAAGDLPYGAFGEILWDTQRQEMQSLADRIIACRQPGKSMEVDLLCNGV 950 Query: 897 HLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQ 951 +TG + G P + + QL LE Sbjct: 951 QITGWLPQV-----QEDGLLRWR---------PSLISVAQG--MQLWLE----------- 983 Query: 952 IDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIVTLLQNGE 1005 +L Y K + + ++ L +E++L L +++ + G Sbjct: 984 -------HLVYCACGGKGESRLFLRKEGEWRFPPLEAEQALTYLAQLIDGYREGM 1031 >gi|322417958|ref|YP_004197181.1| exodeoxyribonuclease V subunit gamma [Geobacter sp. M18] gi|320124345|gb|ADW11905.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. M18] Length = 1082 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 90/827 (10%), Positives = 197/827 (23%), Gaps = 80/827 (9%) Query: 21 MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80 ++ L++ I V +K + L E G + Sbjct: 10 LMEHLVDRLEQVVRAPRSAPGTPFDKELIVVQSKGMQRWLSMELAGRIGVWANG--EFLF 67 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 VEE F L S P + + L+ +K LS Sbjct: 68 PNRFVEEVFARVLPDSPAEAPLFAPEVMTWRILGLLQQVTSKPGFEEIA----GYLSDDA 123 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + LA+ +AD D E L + W + W Sbjct: 124 DGLKRMQLAQRIADTFDRYTIYR--PEKLLQWEEGAE-EHWQA---------QLWRALSD 171 Query: 201 ELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + +A E + I + G P +++ +A + + L Sbjct: 172 GVTQKHRARLLHDFRKAL-ESGRLPEQRRISVIGIPSLPPFHLEVLARIAQYGEVNLFLL 230 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 I + + + + L + + R+ + + + E Sbjct: 231 NPCRQYWGEIVS--ERELARLEKRGEGAEQWYETGNPLLASWGKLGRDFFEAIIDGCGEH 288 Query: 321 YGRSMVISKSF---LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 R L +D+ E + + + + + E + Sbjct: 289 ERRDSFPELPQGSLLHEVQADIVELRGAEAGLRTVSAHDLSLKVHSCHSPMREVEVLYDT 348 Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDIS-AGIPLSTTLHSS 428 L D + + ++T D + G I S A L ++ Sbjct: 349 LLSIFDADPSLSPRDVLVMTPDIEAYAPYISAVFQNPEEGGERIPYSIADRSLKNEGEAA 408 Query: 429 -ILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L ++L + +++ P + R + + Sbjct: 409 QALLAILGLCGGRYGVATVLDILESPPVARRFNLSEDDLETVRDWLRGANIRWGIDAEQR 468 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLVT 536 + + A + + + + + D + + Sbjct: 469 TEHGVPPFRENSWAAGLDRLLLGYAMNGDGRSFYNGILPFDDMEGGVALVFGRFLAFCER 528 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+W L + L + L E Sbjct: 529 LFGETRALARPRVPSEWVPALRQILDDFILPDQEGERELLSLIEIAKKLGECGNQAGFEG 588 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + + + + + G + + + + L R + F + L G++EG +P+ Sbjct: 589 QVGIEVVRY--WLEQQL-GSSERGLGFLTGGVTFCAMLPMRSIPFPVVALIGMDEGQFPR 645 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASR 714 F + ++ + + + L + + +N S Sbjct: 646 RNPAQGFDLMTAERRAGDRSPRDEDRYL-FLEALLSTRKRLHISYVGQSIKDNKELPPSV 704 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLD---------------------------WTRKLDY 747 + LL F + L K+ Sbjct: 705 LVSELLDYLERCFVTSNGTPAGAVLHHPLQPFSQKYFTGNPALFSYSRRNCAGAAAKMSP 764 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + P + P E T + + +P RR L + Sbjct: 765 PSTPPPFLEAPLSPWEEESTVTLKA--LIDFLCNPAKELLRRRLGIR 809 >gi|170755767|ref|YP_001780080.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str. Okra] gi|251764549|sp|B1IEL7|ADDB_CLOBK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|169120979|gb|ACA44815.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str. Okra] Length = 1150 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + K Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWGTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921 + + + + + + I+L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGI 951 Query: 922 DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|153940479|ref|YP_001389797.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str. Langeland] gi|251764550|sp|A7GAI7|ADDB_CLOBL RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|152936375|gb|ABS41873.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str. Langeland] gi|295317884|gb|ADF98261.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str. 230613] Length = 1150 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G H+I+ + + K Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGL 831 Query: 829 PE-------INHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921 + + + + + + I+L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGI 951 Query: 922 DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L D I + Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSGINGEPGALLYLKLD-----DPIVKNTVD 1006 Query: 981 YSADELSEKSLKNLI 995 S +E+ + +KNL Sbjct: 1007 MSDEEIEKSIIKNLK 1021 >gi|88808888|ref|ZP_01124397.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7805] gi|88786830|gb|EAR17988.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7805] Length = 1105 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 77/868 (8%), Positives = 216/868 (24%), Gaps = 48/868 (5%) Query: 40 NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99 P V + V T + L I G + + G + + A L + Sbjct: 25 PPNPFEQVEVVVNTWPTSRWLGERLASINGISALV--RFPFPGSRLRQLVQAVLSTEPPI 82 Query: 100 NPPVSNIQRLLE-LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 + P + + LA L + + K + ++ + + LA+ LAD +D Sbjct: 83 DDPWRAERLVWTVLAVLPQLMQRKEAEPLRQWWNSHRTASETLTREQWLLARQLADAVDD 142 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 ++L G + + + +RL V + +R Sbjct: 143 YALYR--PQELANWLAGDDGGNLPGVLRWQPLLVRALADRLPSDPFGLQVQRAVDHLR-L 199 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + G + P L+ +A + L + Sbjct: 200 GQAPATTLPRRLRLFGLSNLAPVQIDLLQALAGVMQVELYLLTPCPDLWERSARRRRRLG 259 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSMVISKS 330 N T+S L +L + + + + + ++ + + Sbjct: 260 ENWTASPDGTWLIEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASE 319 Query: 331 FLPPDTSDMRNTDILENKIPNIQ--KCFSDVALIEADNEREEAISIAIALRMSLDE---- 384 + + + ++Q + + + E + + + + Sbjct: 320 GRQASLLEQLQRQLASPEHASLQLKRSDQSLLFMGCAGPWREVQLVRDRILRWMADDPTL 379 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL------HSSILTSLLNAIF 438 + ++T D + + + L+ +LL Sbjct: 380 QPRDILVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSA 439 Query: 439 KLNDFMAIATLVKHP-------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 + + L+ +P L + + ++ R ++ D L+ Sbjct: 440 ERLTATGLEALMSNPAFLSLQGLVAQEAMDITAALQRSGFRWGLDREERHGDDTHSLRWC 499 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + +L++ ++ + + + + S Sbjct: 500 LDRWLIGLILPDEPGLALGTCAPALPDLSLQQLERWWPLLDQVARWIAQLRQSGSC---S 556 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 W + L ++ D W + + + + I ++ Sbjct: 557 AWVERLRRLLSDLFGDGGAWD---WELQAIQQCLDCWVLQAGHC-ELNLETTVVISVLEE 612 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + ++ + +S + + R + ++L GL+ +P+ + F Q Sbjct: 613 ALSADSGRFGH-RSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRR 671 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 L ++ + + +HL+ + S R+ L + Sbjct: 672 LGDPSSTDQDRYV-LLEALLSSRQHLLISWSSRDERRGDTLPPCPPVQQWLSLLRQELSE 730 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + Q ++ K + ++ P L Sbjct: 731 EAMAQVLIEPPANPLDAANFIPAKTDALSCDRRLLQARQCLDDPQRPA--PGHAPLGLAL 788 Query: 792 KLDF-IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEKEN 847 + + + + + ++ + ++ Sbjct: 789 PIHWTLEAKPAAAQANTLNSDQVEQLERWLQAPQRAWLRQRGIEAGEWCDAVEDRSPLAL 848 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + + H E Sbjct: 849 PERALRALMTERLHDELDGLTRDPEARW 876 >gi|257784674|ref|YP_003179891.1| hypothetical protein Apar_0871 [Atopobium parvulum DSM 20469] gi|257473181|gb|ACV51300.1| hypothetical protein Apar_0871 [Atopobium parvulum DSM 20469] Length = 1042 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 117/1004 (11%), Positives = 266/1004 (26%), Gaps = 137/1004 (13%) Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL---ILIWRNKLPDIIKDLYPESPLS 137 L + V+E+ A L + V + +L + R I + D + Sbjct: 14 LSNSVQEQLRASLERWGSAWLIVPSPDAVLLVKRQLGSIQELSVGVNVSTFDEWMRDQWK 73 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE 197 L S L+ L + + ++L L N K + L + + Sbjct: 74 LYGSSDRL--LSTTLRKVFFQQILDGMSADELGTLNNSKGTVE--LLSKLAPEYLTELDQ 129 Query: 198 RLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + S+ ++ L + + + L+ ++ I Sbjct: 130 IMASGQLSAGQMSACKVLERYKALLEEKSYVEV--------CQCLDYLLQSIPAQGPALI 181 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 D + + ++T S Y+ + L+ + D + + Sbjct: 182 FSRVEDLSEARLKFVRKLAQKRDVTFSLYVPEGPAGYAAEQQLELVGGPGCDCRV--DAE 239 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 +S ++ K N V + + EA SI+ Sbjct: 240 PAPAAKSQELNDLLASVF----------RAKEGNKITPSGAVTFLSPLGQHAEAESISRY 289 Query: 378 LRMSLDENKKKSALITADR-NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + ++ K + T++ + + +L GI + + + +L SL++A Sbjct: 290 ISQCVESGSKSFVVYTSNPQRVWDALSQKLAAKGIAVHYRRSVRIQDSLAGRAFASLIDA 349 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 L++ + + + + + + I + + Sbjct: 350 YVTLSERAELEKNIDYQASDHQMGDMSW-------WPPHTLTDYLISPISGISVERAWML 402 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + E C + + + + + I + Sbjct: 403 DKSWRGNRTL-----YATRVLETLSKAAMSSRLCAETIKSLELGRIGSAAQRIIEHLSAE 457 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 V + L +L +E K +S + S E + + L + Sbjct: 458 ISDEQSEVAQSKELTLQSLQNQESLKVMSKIVSSAQELHEAGLKLTPQTLKSFMDLCKDQ 517 Query: 617 TVKPKIEKS--STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 V + S + +L S+ +FD +I G+ + + A + L ++ Sbjct: 518 AVMMPVSNGIKSDIQVLIAPVSQAHSFDAVIFQGM-DTLNFGVKASDGALQEFVRHASKT 576 Query: 675 KTAEKYIGQAAHDFEMANGTRH---------------LIYT----RSLRENNIPTIASRW 715 ++ + + + ++ T R Sbjct: 577 PKVSEFARYQRDFYTALATASTSVAFEKVEQKDVFNAVALSEVKACYPKDYAKKTGLVRG 636 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY----- 770 + +LV D + ++ R LE + + Sbjct: 637 EEEVLVNLLPQASDLKRVAELPTIESGEIDSKLKNIVVLPRHLTRETLEQELQGLIEVSR 696 Query: 771 ------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 S S+I+ + PY + +R +K+ + + GT H ++ + Sbjct: 697 EGLPLLSASQIETYLECPYKWFTQRRIKISQVDT---EFAPMQMGTFIHRVLELTHATLL 753 Query: 825 NKNTPEINHLMKQIIDSHF----------------EKENLPPHIDIIW------------ 856 + + ++S K+ L +W Sbjct: 754 AEALGCDVTEVDTAVESVLLQDVAGSRITTDNLDHAKQVLDSCFAQVWDEQFNNINRASS 813 Query: 857 --------RHL-----FHKISHSFLEHEEKIQSSIEKIFVNIPAKMA---IESIGIHLTG 900 + + LE E + F + +E G TG Sbjct: 814 NELIPHSIQERKQVENIRENLKDLLEFEASHFIGYQPRFFELRFGREENVVEYAGAQFTG 873 Query: 901 FADRIDLLKSGFVDITDYK----------TGDNPKKETAQK---LIDPQLSLEAAALKAG 947 DR+D+ G I DYK + K Q ++ A ++ Sbjct: 874 SIDRVDVNAHGQALIIDYKHKGTKDLKAYSAKLSLDSEVSKEVLPRHVQSAIYAQIMR-- 931 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q+ ++ ++ I L K + D + + + +E Sbjct: 932 --KQLTKYELESVAAIYLGTKEQKDKPSFALAGMATEAATEHIW 973 >gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 1176 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 83/769 (10%), Positives = 178/769 (23%), Gaps = 59/769 (7%) Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGST---GSIPATARLMSTVANHPNGAIV 258 + + A+ + IIA T G+ R + V + Sbjct: 404 HYKLDRGVDHVLIDEAQDTSPKQWDIVERIIADFTTGEGAREGVKRTVFAVGDEKQSIFS 463 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 G + K + + K + + + Sbjct: 464 FQGAAPREFDERRRKLERKFADAKLPFCKEDFIYSFRSGKTILESVDHVFRDPEIYASIH 523 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + + S + P D+ + + E + E + A I + Sbjct: 524 AVGAHPVHESLADAAPGIVDLWSLEEREKHEEIEGWPAPFDNVTATSPEVKLARRIRNEI 583 Query: 379 RMSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 + + + L+ N V L + GI + + + L+ Sbjct: 584 KALIAQGVMTGHLGNRRPLGYGDILVLVRRRGNAFDAVIQALKQSGIPVAGADRLKLTEH 643 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L SL +A+ D +A+A +K PL + + + L Sbjct: 644 VAIIDLMSLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLR---------- 693 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 +L K + S +E +L + Sbjct: 694 ----DALAGHAPTDDKFRDAFERLKRCESRAARETPFAFFAWLLGGQGGSEGGRRRILRR 749 Query: 545 CGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 G+ + + L + W + + + Sbjct: 750 LGHEANDALDEFLELALTYERKAPASLQGFMAWLRAADTEVKRDMEITRNEVRVMTVHGA 809 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + ++ + + P + +L + + I G P Sbjct: 810 KGLEASVVFLADTSTSPADTERLSLIRMARGNAPAGGGGVTIWAGSKVEDPPCVA----- 864 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 TAE + + + N I L+ G Sbjct: 865 ------LARASMTAETEHEYRRLLYVAMTRAADRLIVGGCKPANRKDIREFSWYHLIEKG 918 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + +++ R P + Sbjct: 919 LGNSGLAMQEIETSNGKVKRFTRPGEAASDAAGPAGPAAAAGITLPSWLHRMAAPEAPAT 978 Query: 784 AVYA----RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + + RGTL H ++ L + + + + Sbjct: 979 RSLQPSDTDEAARSPAGEPADQHRRARLRGTLAHRLLQSLPEAPRERRRDAALSYLARNA 1038 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-ESIGIHL 898 + E ++ + + F E + V I ++ + + Sbjct: 1039 NDWSAAERDALVTRVMAVLDDARFAPVFAE--------GSRAEVAIAGRLTTRRGDTLLV 1090 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALK 945 +G DR+ + V + DYKT P + + QL+L A L Sbjct: 1091 SGQIDRLVVTPD-EVLVVDYKTSRAPPRNLADVPQAHIRQLALYRAILA 1138 >gi|303252733|ref|ZP_07338894.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248957|ref|ZP_07530967.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648383|gb|EFL78578.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854568|gb|EFM86761.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1114 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 85/780 (10%), Positives = 197/780 (25%), Gaps = 88/780 (11%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 L+ + + NP S T+ V + Q L+ + + TG + Sbjct: 14 AALLIRLQQNDPNPNPFESETVLVQSVGMAQWLQMQIADQTGVAAH----------YQFP 63 Query: 88 KFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPESPLSLPI 140 T+ L Y + P + + E L RLI + K + L Sbjct: 64 FPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYLNKDARQ 121 Query: 141 SPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMWWLLAAD 186 P LA +AD+ D W E L A+ + Sbjct: 122 YPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE--RDILA 179 Query: 187 FLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKGPIIIAG 234 L+ S W + ++ A S + E I + G Sbjct: 180 NLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPKRIFVFG 239 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNITSSNTT 287 + ++ ++ H + + + + Sbjct: 240 ISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQDLDALL 299 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 Q L + RE + +L + + + Sbjct: 300 AEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAILNFNNE 355 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 + + + + + + E + L + N K +++AD + Sbjct: 356 QRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADIDKYAPYI 415 Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH---- 452 + + I +S + + LLN ++ L+ Sbjct: 416 NAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLLDVKALR 475 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 + R + + D + + + Sbjct: 476 ERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKAESGIWQ 535 Query: 513 SEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + L ++ + + + ++ +W + Sbjct: 536 DSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI------GEFY 589 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTL 628 + + L+S ++ + + I+II L++ + + + + + Sbjct: 590 QESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQFLAGKV 649 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 L R + F + L G+NE +P+ + N F +MQ + Sbjct: 650 NFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDDDRYLFL 707 Query: 689 EMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 E + + + + +N + S + +LL + + + ++ L Sbjct: 708 EALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKDSFSEAL 767 >gi|168261854|ref|ZP_02683827.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349143|gb|EDZ35774.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1123 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 105/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLERATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|168820279|ref|ZP_02832279.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342937|gb|EDZ29701.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087421|emb|CBY97186.1| exodeoxyribonuclease V gamma chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1123 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATTCPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLLARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|298710700|emb|CBJ32124.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1074 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 107/942 (11%), Positives = 229/942 (24%), Gaps = 140/942 (14%) Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMK-----GTKGPIIIAGSTGSIPATARL 245 + + + + R E + + PA + Sbjct: 161 VYEAFVDLKRREGVEDFSDQLLLARRILRESATAKAALSLRLSHVYVDDIQWYSPAMIDI 220 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--YSLAKLLDFL 303 ++++ GA + D H+ I + Q + Sbjct: 221 LASL--VAPGARITATADPHLAAMSRVGIFRAEHTAIARFKKAFPGAQELHLEGNHHSSS 278 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE----------------- 346 I+ + R + D Sbjct: 279 AIQMAMKTLEPRDAPAAAKRKNSAKAAKADAPGVADFLEDTAGVERNTSAAAAAATDEKP 338 Query: 347 --NKIPNIQKCFSDVALIEADNEREEAISIAIALRM---SLDENKKKSALITADRNLARR 401 P S + + E +E ++ +R + +A Sbjct: 339 ALATTPGAASRDSRLTCLTFQTEGDEVKALGRRVREVIKAGVHPGDIGVAAVGGGGVADT 398 Query: 402 VKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + L+ G+ ++ + +L S L + ++ + L+ Sbjct: 399 LVAALSAAGVPVESPPRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMS----CPAY 454 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 ALE R + L+S + D + + ++H +S + +A Sbjct: 455 ALPGGELTAALEGHLSR-------YVPLRSFLRDIHSGEGGDSHPRGGGHGVSTSARNVA 507 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L+ + + L S + +E R + + Sbjct: 508 GKLLSDV-DRFAETAKRTGVREIMLDFLRYSGRLERLEEPTTKEEEEEGRAVAEFFELTA 566 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDII--------TRLIDGETVKPKIEKSSTLFILG 632 + + ++ + GE S + + Sbjct: 567 RAEQQAGGDNVALVEPILRLFRRHGTGYMKPSGPRDDEAATGGEFGGSSAGSSGVVRVFR 626 Query: 633 TLESRL----LNFDTLILGGLNEGVWPKNTA------KNPFLSRVMQSDLNLKTAEKYIG 682 E ++ T+ + + P N PF D AE + Sbjct: 627 LGEDWNAGENRSYHTVFIPFCSRARLPGNLRTPRLTVPGPFRGYPEPRDTGSLRAEADLA 686 Query: 683 QAAH------DFEMANGT--RHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLK 732 +A H A G+ + + + S R S +L +L + Sbjct: 687 RAYHENRGRAMLYAALGSAGQEVCLSVSARAIRGKTHLSPSPFLAEILGDDAPREWITAI 746 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFP-------------------PLEAQPRTYSFS 773 + + D ++ P A SFS Sbjct: 747 ETPKDQEDRLHLVEDEGAAAPGGSRDAAPKVVEGGYATVAGRLESASPSPAAAALRLSFS 806 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--------KRIN 825 I PY+ + + +L + P+ + G H + L++ Sbjct: 807 SISSFAACPYSYFLQHVLNVSPPPNPR-----MVYGQAMHEGVAALLRGVASGSRGAGPP 861 Query: 826 KNTPEINHLMKQIIDS-HFEKENLPPHIDIIWRHLFHKISHSFLEHE-------EKIQSS 877 + Q + FE + + +E S Sbjct: 862 PTLEAVVEDFNQHLRGCAFESVDQLRTLRAAGVAGLESFMSRLIEDRGCTTGAGSGHNSQ 921 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS--------GFVDITDYKT--GDNPKKE 927 ++ V + I + L+G DR+D+ + G + ITDYK+ G Sbjct: 922 PRQLLVERKFMVKIPEASVVLSGIFDRVDIEAAVGEGSSHPGLLSITDYKSNVGAKVPSR 981 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + + QL + A A + ++A D ++ A L+ Sbjct: 982 MVRD--NLQLRIYALAAER--LFGTPPTEIA-------------IESIEDGRRGVAVPLA 1024 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 + L E ++ + S ++ + H+ R Sbjct: 1025 ADAKVAL-EAISATATAVRAERFEATPSFQACTFCSFKHMCR 1065 >gi|313123656|ref|YP_004033915.1| ATP-dependent helicase/deoxyribonuclease subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280219|gb|ADQ60938.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1179 Score = 109 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 105/994 (10%), Positives = 244/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + + + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMPESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S D + + ++ L++AD+ EA +A + Sbjct: 278 -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ + L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEITEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSKILQEPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012 >gi|227810113|ref|ZP_03989026.1| predicted protein [Acidaminococcus sp. D21] gi|226904693|gb|EEH90611.1| predicted protein [Acidaminococcus sp. D21] Length = 532 Score = 109 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 67/552 (12%), Positives = 146/552 (26%), Gaps = 78/552 (14%) Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 L L I L T S+ + + L L Sbjct: 7 LWESLSQSIEPSHVSLWKKLTVLMHVSRLGSLPELFDAIMETLHVESLLLAMPHGREKMA 66 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 K L S+ + + ++ ++++ R+ E+ + ++ I+ +S+ Sbjct: 67 NVWK-LRSMAASFAMQEGGGSEDFLDRLNLMRRMQARESGAALEPDAKSVQIMTIHKSKG 125 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSR-----------VMQSDLNLKTAEKYIGQA--- 684 L F + L P ++ L + +E Sbjct: 126 LEFPAVFLPDQQYKSPPDRLGLQYLPGAGLGIMIPGDEGPQKTALYEELSEDNRALEWEE 185 Query: 685 --AHDFEMANGTRHLIYTRSLRENNIPTI---------------ASRWLQRLLVLG-GTD 726 + ++ + ++ L+R+ G G D Sbjct: 186 KKRQLYVAMTRAEKYLFLSAAVSEEKESVRREKRAKGRVKSRENWYESLRRIFHDGEGKD 245 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----YSFSEIKQLINDP 782 + ++ + L P F L+A S + + P Sbjct: 246 LVEWVELKASEILALPLSFSIQEAPPLELEAGAFEKLKAVEFPQKVILSATALGTYDLCP 305 Query: 783 YAVYARRILKLDFIPHFKKD-----PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + + + + GT H ++ K Sbjct: 306 RRYFYQYRSHMPSLDPDVVGTGSVRIPPATLGTYIHKVLELCRTAPAEKAKELA------ 359 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---MAIESI 894 +E+ + R + ++L + + M + + Sbjct: 360 -----LLEESYSDGEKNVLRKEGGPLIDAYLASPLYAAYGDFPQDAEVDFELPLMTVGNA 414 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 ++ G D++ L G ++I DYK+G P +K QL++ + A +A + Sbjct: 415 SVYFEGSIDKVVHLPDGTLEIIDYKSGHPPLDGMERKAYSRQLAIYSLAAEA-----LYH 469 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN--GEQPFISHL 1012 KV+ L+ + D++ L ++T LQ E+ F Sbjct: 470 MKVSQASLHFLRNLSTWELTDRDREA-----------AELKALLTKLQTLGEEEDF---- 514 Query: 1013 RLSEKSNIQSEY 1024 + + Y Sbjct: 515 AVKTDACTYCGY 526 >gi|168181295|ref|ZP_02615959.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf] gi|237793750|ref|YP_002861302.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str. 657] gi|182675234|gb|EDT87195.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf] gi|229261419|gb|ACQ52452.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str. 657] Length = 1147 Score = 109 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 30/255 (11%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S +++ P+A + + LK F D G L H ++ + +K + Sbjct: 774 KMSVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGILMHGVLEKFSQKLEKQGL 831 Query: 829 P-------EINHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + ++I+ + ++L + KI +L E + Sbjct: 832 EWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILRRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTG- 921 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGI 951 Query: 922 DNPKKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L + + K+ Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERSEINGEPGALLYLKLDDPIVKNTVDMSDKE 1011 Query: 981 YSADELSEKSLKNLI 995 + +K LI Sbjct: 1012 IEKSIIKNLKMKGLI 1026 >gi|284922758|emb|CBG35846.1| exodeoxyribonuclease V gamma subunit [Escherichia coli 042] Length = 1122 Score = 109 bits (271), Expect = 4e-21, Method: Composition-based stats. Identities = 112/1084 (10%), Positives = 256/1084 (23%), Gaps = 161/1084 (14%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ L+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEELMEFIVECERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLADD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W N + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYRPDWLAQWEAGNLVEGLGEAQAWQAPLWKALVEYTHE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------- 297 ++ + I + ++ Sbjct: 238 LLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 LL D L + + + Sbjct: 298 PLLASWGKLGRDYIYLLSDLEGSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNIEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + + + + E + L L+E+ + ++ AD + Sbjct: 358 FSRSDNKRLLDPLDNSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNA 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + G+ L ++ P P T Sbjct: 773 EARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPETV 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 +++ P + + L+++F + PD G + I +L+ + ++ Sbjct: 833 PLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQD 892 Query: 828 TPEIN-HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + D +++ + Q Sbjct: 893 DAERLFRRFRAAGD--LPYGAFGEIFWETQCQEMQQLADRVIA---CRQPG-------QS 940 Query: 887 AKMAIESIGIHLTG---FADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + G+ +TG G P + + QL LE Sbjct: 941 MEIDLACNGVQITGWLPQV-----QPDGLLRWR---------PSLLSVAQG--MQLWLEH 984 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A + D + +E++L L +++ Sbjct: 985 LVYCASG-----------------GNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGY 1027 Query: 1002 QNGE 1005 + G Sbjct: 1028 REGM 1031 >gi|301060340|ref|ZP_07201203.1| exodeoxyribonuclease V, gamma subunit [delta proteobacterium NaphS2] gi|300445536|gb|EFK09438.1| exodeoxyribonuclease V, gamma subunit [delta proteobacterium NaphS2] Length = 1202 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 109/945 (11%), Positives = 230/945 (24%), Gaps = 105/945 (11%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L V + PL P L V + Q L+ + G + + + Sbjct: 43 LRKVAVGWIKKHPLAP--LEDEVFIVQSNGMAQWLKLALAQNDGCGISAAVSFQLPARFL 100 Query: 86 EEKFTADL-LLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + + A L + L P L RL+ ++ D ++ LS Sbjct: 101 WQAYRAFLGPDTIPLESPYDMEPLKWRLMRLLKNLTHE--DGFPEIAE--YLSDDHDAIK 156 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA---------SKYW 195 LA LAD+ D + W W D+++ + W Sbjct: 157 RYQLACRLADLFDQYQVYRADW-----------LEDWTRGQDWIRNVSGNPAPLPSTHRW 205 Query: 196 TERL--------VELNASSPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATAR 244 RL ++N S + A G +II G + T Sbjct: 206 QARLWRLIQRDVPDVNRDSSRFHLHRRFLKAARTASSPPPGLCRRVIIFGISALPEQTLE 265 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYSLA 297 + + H + + I T Y Sbjct: 266 ALHALDRHTQILFFVLNPCRYYWADILEKRDLLRLKQPPHLQPDGTLSKAHSESVHYEFH 325 Query: 298 KLLDFLD-IKREDVKRLGNVSNEMYGRSM------VISKSFLPPDTSDMRNTDILENKIP 350 LL R+ + L R+ D + + Sbjct: 326 PLLASWGKQGRDTIGLLNQYERTGTARNGFGEIDLFDDVVSKKKDAPLLHQVQQAILDLK 385 Query: 351 NIQKCFS----------DVALIEADNEREEAISIAIALR----MSLDENKKKSALITADR 396 + + + + E + L + + + ++T D Sbjct: 386 PLPSVNGSKNTVSSKDLSITFQLTYSRQREVEVLQDHLLSLFKETRNLTPQDIIVMTPDI 445 Query: 397 NLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 ++ + I I+ + LL+ L Sbjct: 446 DVYTPHIESVFGNLVPHDPRFIPFAIADRPNPTGVAMLRGFEKLLSLPASRMTQSEFLDL 505 Query: 450 VKHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQK 500 ++ P + ++ + + + ++ +R N + + Sbjct: 506 LQIPAVRHRFGLAKQDVRKLQQWIDGAGIRWGLNGEQRTAFELPPDITANTWQFGLRRML 565 Query: 501 NNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 V + E + L + I + + + S W +T Sbjct: 566 LGYAVGAGEPWRDIEPYDEIGGLEAELIGPLHDICSRLEKHWQALKKPASPKGWYDRMMT 625 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + + L ++ + L + ++ + D+ R I + Sbjct: 626 LINDFFLPADSNDQLIYSLLH-EILETWQKDCLDADLKEPLSLAVVRDVWLRTIKDRHMS 684 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + R + F + L G+N+G +P++ F + Sbjct: 685 QHFLVGP-VNFCTLMPMRAIPFKIVCLLGMNDGEYPRSHTPENFDLMTFPGFYRPGDRSR 743 Query: 680 YIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 E R L + R +N + S L +L + G+ Sbjct: 744 REDDRYLFLEALLSARERLYISYIARSVIDNTERMPSVLLSQLRDYLAEGWRIEAGLPGE 803 Query: 737 CYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 + R L + H +P F P + + SE ++++N P + L Sbjct: 804 KVAEPARTLPDQLTRLHPLQPFSKAYFMPHKTRKPFTYSSEWRKMLNPPEPGWNPHRL-- 861 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 P N + +R+N + + + + + Sbjct: 862 -PPAMMDAGPGLIQWIRCLKNPVKSFFNQRLNIYFDDAETINRDQEPFSLDALSPFNLGQ 920 Query: 854 IIWRHLFHKISHSF--LEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + + HE + + G Sbjct: 921 RLLKAGLAAPVTEYKKAVHEAAKRLQRT---------GELPPGGF 956 >gi|227541923|ref|ZP_03971972.1| helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182366|gb|EEI63338.1| helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 1228 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 79/691 (11%), Positives = 183/691 (26%), Gaps = 72/691 (10%) Query: 46 SVTIYVPTKRAIQELRS-------EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V T++A Q L+ + + +S + + +L+ Y Sbjct: 63 QVLGLTFTRKAAQNLKQKIRSSLFDLHQKVQGQSVRAEENLDASVFTYDAYAQNLVREYG 122 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-NAIWLAKNLADIID 157 L P R++ A ++ I + D E+ + A + L + + Sbjct: 123 LLLPTEPGSRIISQAEMVQIATAIVEDFHGTFPDETATKSTSNVATKIVSLVNAIESNMR 182 Query: 158 IIE-TEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPVG 209 E E L + N + L + + L + ++ Sbjct: 183 TAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFSH 242 Query: 210 YQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLD 263 A R + +++ + + + ++ G V D Sbjct: 243 TMAAAARLASGEPSVGSSERHRYRVVMLDEYQDTSHSQRIFLRSLYGTGEPGLAVTAVGD 302 Query: 264 CHIPTAIWNTITEKSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 W + ++ +P + + L++ + Sbjct: 303 PMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFRNP-----GAVL 357 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-- 379 G + IS + L + P +V L + E EEA +A L Sbjct: 358 GVANHISGAILEATGEYAPEERSVAELEPRAGAGDGEVLLANFELEEEEADFVARQLAAE 417 Query: 380 -----------------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + + ++A++ + L ++ + + Sbjct: 418 YHGVSDDQLDEYVATLADSAQPTRATNAQPFEAAILVRQHSQVPEAVKALEKYKVPYHVH 477 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + L L S+ A+ + D A+ ++ PL K GF + + Sbjct: 478 SLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPLVKLGFADVKALTNRARTLNSYQ 537 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITP 533 R + + D +++ P E + LA L D + Sbjct: 538 RDKATAETTTEDAVNAADESGATESDADNPALVRLKKEIEDALAEDTVFLGDALADLGDA 597 Query: 534 LVTYKTNKNSTCGNLSISDWTKLT---------VTCLQNVCLDEHRKLPNLWFEEEG--- 581 + S W + ++N L + G Sbjct: 598 SQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIENTFGIRTEVLARENPRQLGVPG 657 Query: 582 -KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLESRL 638 L + + + S A +++ + + + + + + I+ ++ Sbjct: 658 TSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAMDQGEQTVSPNRVDIMTVHAAKG 717 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L F T+ + G N ++ + + Sbjct: 718 LEFATVAVIGANSKMYKDGQQTITTETAASR 748 Score = 85.4 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 32/225 (14%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + +EI QL +P + A+R L+ + RGT FH I E T Sbjct: 1027 RINATEIVQLKKNPEEL-AKRRLRPVPFKP----NSQAKRGTKFHQWIEEHY----TLPT 1077 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + + I + E ++ +FL + + V + Sbjct: 1078 LLDDDQLPGIGEEDVTAEE------------LAQLKENFLASPWADR---TPVAVEQAIE 1122 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE----AAAL 944 I S +TG D + G + D+KTG P + + QL+ A Sbjct: 1123 YQIGSK--RVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRDLPA-LSLQLAEYRLAWAEIQ 1179 Query: 945 KAGSFSQIDCRKVAN-LFYIRLKQKFKIDCITNDKKKYSADELSE 988 +D +V FY+R K + + + EL E Sbjct: 1180 SKREGRHVDPSEVEAVFFYVREGYTLKPETLMDKDDLRRLIELEE 1224 >gi|168242763|ref|ZP_02667695.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449813|ref|YP_002046965.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408117|gb|ACF68336.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337972|gb|EDZ24736.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1123 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 102/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732 + F A + L + R +N S +Q L L G + + Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790 + TR +P + + K + P Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 L L+ + F P R + + E+ L + ++ + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 851 HIDIIWRHLFHKISH 865 F Sbjct: 892 DDTERLFRRFRAAGE 906 >gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22] gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22] Length = 1223 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 76/658 (11%), Positives = 172/658 (26%), Gaps = 57/658 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + + P + G+ V F Sbjct: 67 GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGITDPDVIDPDHPPGEPVISTYHAFA 126 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + SP P + L Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE--------SPGPYPALTRSFPDLVG 178 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195 +L + + + EDL A E A L + Sbjct: 179 DLLTLDAELAEHLVRPEDLTAHDIELLRELEGVALTNADLRKVPEAAAARRELTELVVRY 238 Query: 196 TERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E + R E +++ +++ + A L++ + Sbjct: 239 RAAKRERDLLDFGDQIALSARLAGLPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFG 298 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G V D W + + + + + + + L Sbjct: 299 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFAHPDGRRATRQAL------------ 346 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 S ++ + + + + + + V + EE Sbjct: 347 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPARGAERDGVVRCALLNTHAEEL 401 Query: 372 ISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A ++ + K+ A++ ++ L + +++ L + Sbjct: 402 DWLADSIAHLVRTGKEPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEVAD 461 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L ++ + ++ L+ P + G + L + + R + + L Sbjct: 462 LVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVSHARVDGDQDPDRRLA 521 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + V ++ + + E + T +L+ Sbjct: 522 AAVEGVDPSEVVSLADALDTFLELPLEAEREDDGLPFSPDARVRFARLATELRDLRRSLA 581 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII--ETGSCIKANAIEWID 607 L E P+ +TLS+ S +A + ++ Sbjct: 582 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDIAASFAANSAGEATLLAFLG 641 Query: 608 IITRLI--DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + +T+ +L S+ L +D + + GL G +P + + Sbjct: 642 FLRTAAQYEKGLDNALPGGENTVKVLTAHRSKGLEWDVVAVPGLVTGTFPSTQGREKW 699 Score = 53.0 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 78/758 (10%), Positives = 177/758 (23%), Gaps = 73/758 (9%) Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 R ++ + + +D + + + + L FL Sbjct: 492 RDLALLGRRARRLVSHARVDGDQDPDRRLAAAVEGVDPSEVVSLAD--------ALDTFL 543 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 ++ E + + R + D +++ + +V L Sbjct: 544 ELPLEAEREDDGLPFSPDARVRFARLATELRDLRRSLADPLMDVLHRVLAVTGLEVELSA 603 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI--PL 421 + + ++A R +L +A A+ + L G+ L Sbjct: 604 SPH------ALAARRRETLSNFLDIAASFAANSAGEATLLAFLGFLRTAAQYEKGLDNAL 657 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 ++ + + + D +A+ LV EK+ ++ K + + Sbjct: 658 PGGENTVKVLTAHRSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHTLRGDADTL 717 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + K++ H + + ++LL + + Sbjct: 718 PDVGAWDSRGLKAFQEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSD 777 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 T + + P L A Sbjct: 778 FLTALHDHCAAGYGEIEAWADEPGEGAE--NPALHRSAADHAWPLPLDDTALLRRRAAAA 835 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + +G + + ++ Sbjct: 836 TVLAHLERAASHEGTDPADHASGHPFSDHPSSDHPDWPPPSDDEEPFYEDIHPDDVPHED 895 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 D T + D ++ H++ + P +R Sbjct: 896 DVPPADAFGDPGEDTGDW-------DSWSSDRPPHVV----HAREDPPEQDARPPAVPHA 944 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + + W R LD + R + P + + +++ +L D Sbjct: 945 RRHPAASGLSPEEARTVASWDRDLDALAGELL--RARAKVTDVPLPASLTAAQLMRLAAD 1002 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P A+ + + P RGT FH + ++ Sbjct: 1003 PDGF-AQELARPMPRPPQ----PAARRGTRFHAWVEARFEELRLP--------------- 1042 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 E LP I + E + V P ++ I + G Sbjct: 1043 MLEPGELPGSEAEIADERDLEALKE--AFERTPYAHRTPYRVEEPFQLGIAGR--VVRGR 1098 Query: 902 ADRIDLLKSG---------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 D + L G +I D+KT + QL++ A Q Sbjct: 1099 IDAVYRLGDGDGGSDGDGTTYEIVDWKTSRTRNADP------LQLAVYRLAWAE---QQG 1149 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + ++ ++ + + L E + Sbjct: 1150 VPLESVKATFLYVRTGDVVRPENLPDRDALERLLLEDA 1187 >gi|260599163|ref|YP_003211734.1| exonuclease V subunit gamma [Cronobacter turicensis z3032] gi|260218340|emb|CBA33354.1| Exodeoxyribonuclease V gamma chain [Cronobacter turicensis z3032] Length = 1123 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 102/958 (10%), Positives = 232/958 (24%), Gaps = 115/958 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ A++ + + DP P + V + Q L+ + G + I Sbjct: 11 DVLEAIMEFIVEQQPLPDPFEPE-----IVLVQSTGMAQWLQMSLAQKFGIAANI--EFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + F L P S + +L+ + L D+ L Sbjct: 64 LPASFIWDMFVRVLRDI----PQESAFTKQNMSWKLMKLLPGMLASPDFDML-RHYLHDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W A L A T Sbjct: 119 EDKRKLFQLASRVADLYDQYLVYRPEWLTRWEAGDVVDGLGDPQRWQAPLWRALVEHTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + +R + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFIRTLENAQSCPEGLPARVFICGISALPPVYLQALQALGKHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQYSLA 297 ++ + I + Q Sbjct: 238 LLFTNPCRYYWGDIQDPAFLARLLSRKRKLHAREGTAPLFKDSETASALFNDDGEQEVGN 297 Query: 298 KLLDFLDIKREDVKRL---------------GNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ + + Sbjct: 298 PLLASWGKLGRDYTYLLSGLERFEEMDVFVELEPDNLLHSLQFDLLELRNQALAGVTLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FERSDGKRELDPNDRSISVHVCHSPQREVEILHDQLLQMLEADSQLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS +LL+ + L++ P Sbjct: 418 YSPFIQAVFGSASQERYLPFAISDRRARQAHPALQAFITLLSLPDSRFVSEDVLALLEVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 +F E+ L + + +R + ++ +L + Sbjct: 478 SLSARFNISEEGLRFLRQWVNESGVRWGIDDDNVRELALPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 H S + + L + + L+ + + +++W + L + Sbjct: 538 ESHLGEWQSVLPYDESSGLIAELVGHLAELLMQLNLWRKGLSQSRPLAEWLPVCREMLDS 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + L E + ++ + I + D + +++D E + + Sbjct: 598 FFAPDAETEAALALIE--QQWQAIIEQGIGAHYEDEVPLNLLRDELAKMLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-VNFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------------- 727 E + L + R +N S +Q L+ Sbjct: 713 RYLFLEALISAQQQLYISYIGRSVQDNSEKYPSVLVQELVDYLAQSHYLPGDEALNCDES 772 Query: 728 -----------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRT 769 + + + R+ + P+ P Sbjct: 773 ARRVKAHLMQLYPRTPFDAENFQPDREIQSYAREWLPAASEQGEAHPEFIKPLAPVTLEE 832 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL----FHNIITELIKKRIN 825 F + ++ P + + LK++F + PD +H L Sbjct: 833 LPFEQFQRFWRHPVRAFFQLRLKVNFRTEESELPDAEPFTLDSLGRYHMNQQLLNTLVEQ 892 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 ++ + + + ++ L E S E Sbjct: 893 QDPEALYRRYRAAGE--LPYGAFGELFWESQLQEMQTLAERVLA-ERDSGESREIALA 947 >gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] Length = 1151 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 93/859 (10%), Positives = 205/859 (23%), Gaps = 72/859 (8%) Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + L L + + L A + + L ++D I +K + Sbjct: 301 KRLLTRGLAAKNLAIEAALYAEQERLDRLRAEEKSAATLERSAALGRLVDAIFARYQKLK 360 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 + L+ + W ++ + A +EA+ + Sbjct: 361 YER--VILDFDDLVAKTLTLLERSDASWVLYKLDAGIDHILID-EAQDTSEAQWRILEGL 417 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 G R V + G H+ + K N + Sbjct: 418 MADFAVG--HGRNLAPRTFFAVGDEKQSIFSFQGAAPHMFHEMQRKFERKFINGGERFSH 475 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + A + + M P ++ + Sbjct: 476 VRLTHSFRSAAGVLGAVDSVFGRAESQSGLVAPADVWMGHEPLKTLPSLVEIWPSVGAGG 535 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN------------------KKKS 389 K N E+D A IA + ++ Sbjct: 536 KAENSDWRLPLDFRDESDPPSRVATRIAEKIAALIEPRSGERVHDGESGVLRAVRAGDIL 595 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 L+ V L + G+ + + + L + L + A D + +A Sbjct: 596 ILVRTRGPFFEAVIRALKQKGVPVAGADRLKLGEHIAVQDLVAAGRAALLPEDDLNLAAA 655 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 +K PL + + L + R + + Sbjct: 656 LKSPLIGLDDDDLIALA-----------PGRPGSLFAALLASPDSRFRPARETLGRWRAR 704 Query: 510 SRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + ++L D + I L + L+++ + + + E Sbjct: 705 AAARPFAFYASLLGEDQGRRAIEGRLGVEAVDAVDEFLRLALAHEAEPAPSLAGFLADFE 764 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + + + + +A + ++ + + ++ Sbjct: 765 T----------VQREVRRDMESGGDVVRVMTVHAAKGLEAKIVFLPDTCGGLSAQHDPSV 814 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 F L G VW A++ + + L ++ + Sbjct: 815 FALEETH-----------LGAAPVVWSPRKAEDCDKAAAARKRLRELAEDE---YRRLLY 860 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 IY P ++ R+L Sbjct: 861 VALTRAEERIYICGFHGAKKPPELC--WANMIEATLAPTLQQAPAFWNVEEFVLRRLSPG 918 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP-DRTD 807 + P + + L + L + Sbjct: 919 ADLAVQETAAPVEGGSLIAPGWLSRRLDPLEEPAAPMRPSSALAASDRRADAAGRREALQ 978 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 G+L H ++ L + + + + K + + + I+ Sbjct: 979 LGSLTHILLQYLPDQPVEARARAGLAYL-----AVRAKGLDEAAHERLLQAALAVIAAPQ 1033 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 LE + + + V + K+A+ + + G DR+ L G V + D+KTG P Sbjct: 1034 LE---PLFGAGSRAEVAVAGKIALPGGASVDVIGRIDRL-GLSEGEVWVADFKTGAPPAP 1089 Query: 927 ETAQKLIDPQLSLEAAALK 945 + Q++L AAL+ Sbjct: 1090 GEVPQSYLTQMALYRAALR 1108 >gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] Length = 1147 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 92/843 (10%), Positives = 205/843 (24%), Gaps = 68/843 (8%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + PL + A A+ L + I E + L AL + Sbjct: 321 LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ + + A G+ T Sbjct: 378 DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V + G D + S + A + Sbjct: 436 F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 V + G + S + I E ++ A ++A Sbjct: 495 AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552 Query: 366 NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412 AI +A + ++ L+ V + G+ Sbjct: 553 EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + ++ + L ++ A D + +AT +K PL + A+ Sbjct: 613 VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672 Query: 473 LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 D + L + + L + L+ Sbjct: 673 ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + + + + + G ++ Sbjct: 733 EAGDAIDVFLAQASDAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ ++ L + T + L Sbjct: 782 ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 VW ++ + +S L + E++ M HL+ Sbjct: 834 ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767 + + R+ + G + ++ W + P P Sbjct: 888 TPASWCEMVRIGLERGLGDGEAVETDHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + E + + D + RG L H+++ L + + Sbjct: 948 FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007 Query: 828 TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + ++ K+ + + +I + E Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLASLFSDQARAEVA----------- 1056 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943 + ++ +E I +TG DR+ +++ G V + D+KTG P + + Q+SL A Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115 Query: 944 LKA 946 A Sbjct: 1116 AAA 1118 >gi|16766298|ref|NP_461913.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421545|gb|AAL21872.1| exonuclease V, subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 1123 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 104/942 (11%), Positives = 241/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMFND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P++ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRHVAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|315656387|ref|ZP_07909276.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492946|gb|EFU82548.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1164 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 115/1038 (11%), Positives = 261/1038 (25%), Gaps = 125/1038 (12%) Query: 45 ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + P A + L + +L S G V E + P Sbjct: 71 PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V RL A +++ ++ L + + + ++L D I + Sbjct: 129 EV----RLATDAEVMVQIQDFLAGMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177 Query: 162 E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + + + + + + L+ +S + ++A A Sbjct: 178 FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I ++S A +G ++ + + + Sbjct: 238 -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 ++ L + L R V S ++ Sbjct: 291 ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394 + E + L+E + + I L+ + + + A++T Sbjct: 346 SSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405 Query: 395 DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447 AR+V L I + + L+ + L ++ A+ + +A Sbjct: 406 SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465 Query: 448 TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 L+ L + Y R + + G+ D D I Sbjct: 466 GLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVG 525 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 N ++ + ++ + + V I+ I + +V Sbjct: 526 NLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612 L D + L L ++ + + + D Sbjct: 586 LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645 Query: 613 ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + TV P + ++ + ++ + + GL +G WP Sbjct: 646 FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSI 705 Query: 664 LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 L M + T G H F + + ++ + Sbjct: 706 LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756 + L + ++ + R +D T + Sbjct: 766 TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825 Query: 757 -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 P P S S +++ + +P + Sbjct: 826 CPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882 Query: 804 DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKENLPPHIDII 855 G + H L ++ + ++ ++Q + + ++ Sbjct: 883 AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGDTWVESN 942 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES----IGIHLTGFADRIDLLKSG 911 +R Q + +E+ + DR+ + G Sbjct: 943 FRRHIETCLVPLATFLVNHQ---YPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHG 998 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 V I DYKTG+ A+ + QL+L AA A Q +A + +++ K Sbjct: 999 RVIIMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKK 1058 Query: 972 DCITNDKKKYSADELSEK 989 T ++ ++ + Sbjct: 1059 LYSTQGIEEPREPKVWAQ 1076 >gi|330684449|gb|EGG96172.1| putative helicase-exonuclease AddAB, AddB subunit [Staphylococcus epidermidis VCU121] Length = 752 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 70/596 (11%), Positives = 157/596 (26%), Gaps = 101/596 (16%) Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK-ELAVLLV 524 + LE A+ +D + ++ H + R + E +L ++ Sbjct: 4 HLIDLLENFAIERGIYGKRWLDDELFNIENFRKMGRKEHQLTQEERDTFEQVVKLKTDVI 63 Query: 525 DHILQCITPLV---TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 D IL + T + + ++ + +T + D + ++ Sbjct: 64 DKILHFEQAMNEGKTVRDFATAFYESMEYFELPNHLMTERDMLDNDGY-HEQAEEIDQIW 122 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 L + ++ + ++++ ++ + + I +++ N Sbjct: 123 NGLIQILDDLVTVFENENMSLSRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNK 182 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN-------LKTAEKYIGQAAH--DFEMAN 692 + L G+N+G P+ + + +S + TA+ A M Sbjct: 183 KHIYLVGMNDGSMPQPISSSSLISDDEKKIFEENAQIELSPTADILQMDEAFVCYIAMTR 242 Query: 693 GTRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKRGQCYL------------ 739 T + ++ SL + S +L ++ + N+ + Q Y Sbjct: 243 ATSKVTFSYSLMGASGDEKEMSPFLAQIKDIYQDLDAVNIHQMHQAYPMSLIENVHQTKI 302 Query: 740 -------DWTRKLDYTTKQPHYKRPK-----------------------------PFPPL 763 W + + L Sbjct: 303 NLFEALRAWLDEEIVAETWIDAYQVMRDDERLNKDLDYLMTSLTYDNETTQLNETLAQDL 362 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S + P+ YA L+L+ K + D G +FH+++ + + Sbjct: 363 YGKTINASVSRFEGYQQCPFKHYASHGLRLNER--TKYELQNFDLGDIFHSVLKYISDRI 420 Query: 824 INKNTPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHSFLEHEEKIQ 875 +K + E I + L + Sbjct: 421 NGDFKHLDQKKIKALTTEALETILPKVQFNLLNSSAYYRYLSRRIGAIVETTLNALKYQG 480 Query: 876 S--SIEKIFVNIPAK--------------MAIESIGIHLTGFADRID-LLKSGF--VDIT 916 + + + + I++ G DRID K V+I Sbjct: 481 DYTKFKPQQFETGFRKKPKSDDELIAQSLTTKQGVPINIRGQIDRIDTYTKDNQSYVNII 540 Query: 917 DYK---TGDNPKKETAQKLIDPQLSLEAAALKAG----SFSQIDCRKVANLFYIRL 965 DYK + + Q+ + + I K L Y + Sbjct: 541 DYKSSESSATLDLTKVYYGLQMQMMTYMDIVLQNQDRLGLTDI--VKPGGLLYFHV 594 >gi|317128675|ref|YP_004094957.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM 2522] gi|315473623|gb|ADU30226.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM 2522] Length = 1171 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 86/266 (32%), Gaps = 33/266 (12%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNT 828 S S ++Q + +A +A L+L + D GTLFH + E+ +R K+ Sbjct: 794 SVSRMEQYQSCAFAQFANYGLRLKERET--YKLEAPDVGTLFHAALKEMADYLRRNGKDF 851 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWR---------HLFHKISHSF--LEHEEKIQSS 877 +++ + +E P I ++ + E+ S Sbjct: 852 SQLSKEECSTLAKKIVEELAPKIQREILLSSNKYHYIKQKLEEVVARASHVLAEQSRSSG 911 Query: 878 IEKIFVNIPAK--MAIESIGI--------HLTGFADRIDLLK--SG-FVDITDYKTG-DN 923 I + + + + L G DR+D+ + G ++ I DYK+ N Sbjct: 912 FSPIGLEVAFGENQDLPPLQFQLQNGTTMELVGRIDRVDMAEGRDGLYLRIIDYKSSAKN 971 Query: 924 PKKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITNDKKKYS 982 + + QL + + S + A + Y + ++ Sbjct: 972 IELSEVYYGLSLQLLIYLDVVITFSERWLGAKASPAGVLYFHVHNPIIQAKEKMTIEQIE 1031 Query: 983 ADELSEKSLKNLIEI---VTLLQNGE 1005 + + +K LI V L + Sbjct: 1032 TELFKQFKMKGLISANTEVAQLMDEN 1057 >gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] Length = 1226 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 89/958 (9%), Positives = 224/958 (23%), Gaps = 183/958 (19%) Query: 171 ALKNEKYGMWWLLAADFLKIA---SKYWTERLVELNASSPVGYQIALMRAE-----AEHL 222 L ++ + + +L +A + + + Sbjct: 315 QLAQTEFVPYAEKSLAWLSVAGESIRDYELIKKSRACVDFDDLLVLSRDLLRNDLTVRQA 374 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNI 281 + + +++ + P A L+ + + D + Sbjct: 375 LSRSIRVLMVDEFQDTDPVQADLVEMICGKELTTGKLFLVGDQKQSIYRFRGADPLVFRS 434 Query: 282 TSSNTTYSTHPQ-------------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 S + + + E ++ R + Sbjct: 435 LKSKIPAAGQLPLTINFRSQPPILHFVNILFRRVMGADYEALEPSFADEKPELERIEFL- 493 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN---------------------- 366 + D + + + + +D +A + Sbjct: 494 --WATTDVVENKAVQGSIPSTVPLAQGLADEQARDAADAESQDVENIDDDSRSDSGEKQT 551 Query: 367 ----EREEAISIAIALRMSLDEN---------------KKKSALITADRNLARRVKLELT 407 R EA IA + L + ++ + L Sbjct: 552 APFLRRREADWIARRILELLADPTPRIREKSGPWRTIVPGDITILFRALTNLEVYEQALE 611 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 GI+ ++ G L L + D ++ L++ P F P + Sbjct: 612 AAGIDYYVAGGRAFFAQQEIYDLAHLCQFLDDPEDGFSLVGLLRSPFFCFSDPLIHRLA- 670 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 R + + S+V + + Sbjct: 671 --------SRAGGITQSLFAEASVVSGLSPEETA------------------------QV 698 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 L + + ++ + + + L + L Sbjct: 699 QFAAQTLGSLVEQ----RDHWPLARIIRRALELTGYEAIVSQEFLGS-RKLANVHKAIEL 753 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + G A + + I + E E SS + ++ +S+ L F + + Sbjct: 754 ARQFDLAGGSRAAFVTQLRESIDQESREELAATHPESSSVVRLMSIHQSKGLEFPVVFVA 813 Query: 648 GLNEGVWPKNTA------------KNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEM 690 +N ++ + L + + ++ A + Sbjct: 814 DMNRPRKTESLPPTLHPQLGALVTPSNPLGERQKHPVGQFIEIMEEAASLEEYQRLLYVA 873 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRL---------------------LVLGGTDFFD 729 A R L+ + + S W+ L + Sbjct: 874 ATRARDLLILSAGIKGFDEGKFSPWMLVLKQVFHLETGLLRNDPWFASGHEDVKTPQEIP 933 Query: 730 NLKKRGQC-----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 ++ Q + +L+ P + R S Sbjct: 934 LIRTHHQPPQFIDHRVQRQGVHKLSFPQVWNELELAESLPWPQLVADVQRGAEGRRRLSV 993 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDP---DRTDRGTLFHNIITELIKKRINKNTP 829 S +++ + + ++ + D G + H ++ + Sbjct: 994 SRLEEFQEQSSSK-LKSLVPAGELEAHSASLSRSDAELLGEMIHGVLERF----EPRAAE 1048 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE-EKIQSSIEKIFVNIPAK 888 E + + +++ PP I+ + + +F E + ++ + Sbjct: 1049 ESEKALLHRLWLWCQRQPAPPGGQILEQA--QQWLKTFASTELIDELAMASELNRELEFS 1106 Query: 889 MAI------ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---KKETAQKLIDPQLSL 939 + + G D + I DYKT E + QL Sbjct: 1107 LDWKMTGEEPKRETEIYGLIDVLMKDSQDDWIILDYKTSRLAAGVTDELLLQPYRLQLGT 1166 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 A A++ F ++ + A L ++R K + + + ++L +++ L Sbjct: 1167 YALAVQR-LFGRLPKK--AELIFMRPKPRR-VVWNMEQVQVSDLEQLVTEAIHQLDAA 1220 >gi|227486915|ref|ZP_03917231.1| helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092989|gb|EEI28301.1| helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 1228 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 79/691 (11%), Positives = 184/691 (26%), Gaps = 72/691 (10%) Query: 46 SVTIYVPTKRAIQELRS-------EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 V T++A Q L+ + + +S + + +L+ Y Sbjct: 63 QVLGLTFTRKAAQNLKQKIRSSLFDLHQKVQGQSVRAEENLDASVFTYDAYAQNLVREYG 122 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA-NAIWLAKNLADIID 157 L P R++ A ++ I + D E+ + A + L + + Sbjct: 123 LLLPTEPGSRIISQAEMVQIATAIVEDFHGTFPDETATKSTSNVATKIVSLVNAIESNMR 182 Query: 158 IIE-TEEKKWEDLHALKNEKYGM-------WWLLAADFLKIASKYWTERLVELNASSPVG 209 E E L + N + L + + L + ++ Sbjct: 183 TAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFSH 242 Query: 210 YQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH-PNGAIVLPGLD 263 A R + +++ + + + ++ G V D Sbjct: 243 TMAAAARLASGEPSVGSSERHRYRVVMLDEYQDTSHSQRIFLRSLYGTGEPGLAVTAVGD 302 Query: 264 CHIPTAIWNTITEKSTNITSSNTT--YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 W + ++ +P + + L++ + Sbjct: 303 PMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFRNP-----GAVL 357 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR-- 379 G + IS + L + P +V L + E EEA +A L Sbjct: 358 GVANHISGAILEATGEYAPEERSVAELEPRAGAGDGEVLLANFELEEEEADFVARQLAAE 417 Query: 380 -----------------------MSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + + ++A++ + L ++ + + Sbjct: 418 YHGVSDDQLDEYVATLADSAQPTRATNAQPFEAAILVRQHSQVPEAVKALEKYKVPYHVH 477 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + L L S+ A+ + D A+ ++ PL K GF + + Sbjct: 478 SLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPLVKLGFADVKALTNRARTLNSYQ 537 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL---LVDHILQCITP 533 R + + D+ +++ P E + LA L D + Sbjct: 538 RDKATAETTTEDAVNAADKSGATESDADNPALVRLKKEIEDALAEDTVFLGDALADLGDA 597 Query: 534 LVTYKTNKNSTCGNLSISDWTKLT---------VTCLQNVCLDEHRKLPNLWFEEEG--- 581 + S W + ++N L + G Sbjct: 598 SQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIENTFGIRTEVLARENPRQLGVPG 657 Query: 582 -KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV--KPKIEKSSTLFILGTLESRL 638 L + + + S A +++ + + + + + + I+ ++ Sbjct: 658 TSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAMDQGEQTVSPNRVDIMTVHAAKG 717 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L F T+ + G N ++ + + Sbjct: 718 LEFATVAVIGANSKMYKDGQQTITTETAASR 748 Score = 85.4 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 32/225 (14%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + +EI QL +P + A+R L+ + RGT FH I E T Sbjct: 1027 RINATEIVQLKKNPEEL-AKRRLRPVPFKP----NSQAKRGTKFHQWIEEHY----TLPT 1077 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + + I + E ++ +FL + + V + Sbjct: 1078 LLDDDQLPGIGEEDVTAEE------------LAQLKENFLASPWADR---TPVAVEQAIE 1122 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA----AL 944 I S +TG D + G + D+KTG P + + QL+ Sbjct: 1123 YQIGSK--RVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRDLPA-LSLQLAEYRLAWAGIQ 1179 Query: 945 KAGSFSQIDCRKVAN-LFYIRLKQKFKIDCITNDKKKYSADELSE 988 +D +V FY+R K + + + EL E Sbjct: 1180 SKREGRHVDPSEVEAVFFYVREGYTLKPEALMDKDDLRRLIELEE 1224 >gi|318606958|emb|CBY28456.1| exodeoxyribonuclease V gamma chain; RecC [Yersinia enterocolitica subsp. palearctica Y11] gi|330859634|emb|CBX69973.1| exodeoxyribonuclease V gamma chain [Yersinia enterocolitica W22703] Length = 1123 Score = 108 bits (270), Expect = 5e-21, Method: Composition-based stats. Identities = 91/766 (11%), Positives = 191/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L + +L S +L L+ L D + Sbjct: 62 ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLDNPVFSAMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE + N W L + Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + +R E + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRILLESDACPAGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290 H + ++ + I + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESVEVKLFRDPEQAEQLFNAD 290 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPD 335 Q LL D L + +E+ + + Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAI 350 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391 T ++ + +++ + + E + L L+ + + + Sbjct: 351 IGTTPETLAHSHQKRVLDLRDRSLSMHVCHSPQREVEVLQDNLLRLLEADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + IS SLL+ + Sbjct: 411 MVADIDSYTPYIQATFGNATGDRYLPFAISDRKASQAHPALQAFISLLDLPQSRFTSEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P+ F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPVLANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + + L + + L+ + + S+S+W L Sbjct: 531 MLLGYAMDSNAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRSLSEWLPL 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E K + S I D + +D E Sbjct: 591 CRQLLDTFFEPDNGTEAVLVLIE--KQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|311278233|ref|YP_003940464.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cloacae SCF1] gi|308747428|gb|ADO47180.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cloacae SCF1] Length = 1122 Score = 108 bits (270), Expect = 5e-21, Method: Composition-based stats. Identities = 112/975 (11%), Positives = 255/975 (26%), Gaps = 125/975 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + + DP P + V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERDRLDDPFEPE-----MVLVQSTGMAQWLQMTLSKRFGIAANI--EFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + F L P S + +L+ + + L D L L Sbjct: 64 LPASFIWDMFVRVLPDI----PKESAFNKQSMGWKLMTLLPSMLEDEAFTLL-RHYLHDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAA-DFLKIASKY 194 LA +AD+ D +W E+ + W L + Sbjct: 119 SDKRKLFQLASRVADLYDQYLVYRPEWLTRWENDERIDGLDAAQAWQAPLWKALVEQTAA 178 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 + L + +E G + I G + P + + + H + Sbjct: 179 LGQPLWHRANLYQ---RFIAALENSERPPAGLPPRVFICGISALPPVYLQALQALGKHID 235 Query: 255 GAIVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYS 295 ++ + I + ++ Q Sbjct: 236 VFVLFTNPCRYYWGDIKDPTFLAKLLARQRRHHRDARELPLFRDPECAAGLFNEDGEQDV 295 Query: 296 LAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMR 340 +L D L ++ I + Sbjct: 296 GNPMLASWGKLGRDYIYLLAGLERYEELDAFVDIEPDTLLHNLQYDILELQNSAIAGRTA 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADR 396 +K + + + + + E + L LD++ + ++ AD Sbjct: 356 EEFARSDKKRELDPNDRSLTVHLCHSPQREVEVLHDRLLAMLDDDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + +LL+ + L+ Sbjct: 416 DCYSPFIQAVFGSASGDRYLPYAISDRRARQSHPALQAFITLLSLPDSRFTSEDVLALLD 475 Query: 452 HPLA--KFGFPEKYLSRAKNALELVALRGNK--NSYDIMDLKSLVLDRIATQKNNTHVPH 507 P+ +F E L + + +R ++ DL + + + Sbjct: 476 VPVLAARFEIDEDGLRYLRQWVNESGVRWGMDDDNVREWDLPATGQHTWRFGLTRMLLGY 535 Query: 508 WQSRLSEED------KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 E E + L+ + + + L+ +++ +++ W + L Sbjct: 536 AMDSQQGEWCSVLPYDESSGLIAELVGHLASLLMQLNRWRHALAQARTLAQWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + L E + ++ + +E D + + +D E + + Sbjct: 596 NDFFLPDPDTEAALTLIE--QQWQAIIEQGVEAHYHDAVPLSLLRDELGQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ + F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRALSPLGF--DLMSQKPVRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E L + R +N S +Q L+ G Sbjct: 711 DDRYLFLEALMSAEQKLYISYIGRSIQDNSERYPSVLVQELVDYIGQSHRLRGDESLNCD 770 Query: 728 -------------------FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + GQ L +Q P E Sbjct: 771 DSEQRVKAHITHQHTRMPFDAANFRSGQEQSFAREWLAAAGQQGEAHGEFIQPLPEQPFD 830 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRIN 825 ++++ P + + L+++F PD G + + +L+ + Sbjct: 831 ALPLEQLQRFWLHPVRAFFQMRLRVNFRLEESDIPDMEPFVLEGLTRYQLNQQLVNTLVE 890 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 + E H + E I + + + ++ Sbjct: 891 QRDAEAMHRRFRAA-----GELPYGAFGDISWDEQCREMQALADRVVSLRQPA------Q 939 Query: 886 PAKMAIESIGIHLTG 900 ++ ++ G+++TG Sbjct: 940 SMEIDLQCDGVNITG 954 >gi|165977328|ref|YP_001652921.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877429|gb|ABY70477.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1114 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLAMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFGLAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSTTDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 ++ L Sbjct: 762 SFSEAL 767 >gi|332088735|gb|EGI93848.1| exodeoxyribonuclease V, gamma subunit [Shigella dysenteriae 155-74] Length = 1106 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 111/1057 (10%), Positives = 249/1057 (23%), Gaps = 160/1057 (15%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V + Q L+ + G + I L +L + Sbjct: 19 ILVQSTGMAQWLQMTLSQKFGIAANID---FPLPASFIWDMFVRVLPEIPKESAFNKQSM 75 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 +L L+ ++ + L+ L+ AD+ D E Sbjct: 76 SWKLMTLLPQLLDRENFTLL----RHYLTDDSDKRKLFQLSSKAADLFDQYLVYR--PEW 129 Query: 169 LHALKNEKYGM---WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 L + L A +T L + + Sbjct: 130 LAQWETGHLVEGLGEAQAWQAPLWKALVEYTHELGQPRW-HRANLYQRFIETLESATTCP 188 Query: 226 T--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + I G + P + + + H ++ + I + Sbjct: 189 PGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQ 248 Query: 284 SNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRLGNVSNEMYGRS 324 ++ LL D L + Sbjct: 249 RRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELD 308 Query: 325 MVIS---------------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + + + + S + + + Sbjct: 309 AFVDVTPDNLLHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQR 368 Query: 370 EAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIP 420 E + L L+E+ + ++ AD + + + IS Sbjct: 369 EVEVLHDRLLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRA 428 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRG 478 + SLL+ + L+ P+ F E+ L + + +R Sbjct: 429 RQSHPVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRW 488 Query: 479 NKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQC 530 + ++ +L+ + S + + L + + Sbjct: 489 GIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHL 548 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + L+ + + +W + L L + + ++ ++ Sbjct: 549 ASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAA--MTLIEQQWQAIIAE 606 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + D + + +D E + + + I + R + F + L G+N Sbjct: 607 GLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGP-VNICTLMPMRSIPFKVVCLLGMN 665 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NN 707 +GV+P+ A F +M + E + L + R +N Sbjct: 666 DGVYPRQLAPLGF--DLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDN 723 Query: 708 IPTIASRWLQRLLVLGGTDFF------------------------DNLKKRGQCYLDWTR 743 S +Q L+ G + + Q Y R Sbjct: 724 SERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGGR 783 Query: 744 KLDYTTKQPHYKRPK------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + P + P P T +++ P + + L+++F Sbjct: 784 QSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRT 843 Query: 798 HFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEIN-HLMKQIIDSHFEKENLPPHID 853 + PD G + I +L+ + ++ E + D Sbjct: 844 EDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGD--LPYGAFGEIFW 901 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG---FADRIDLLKS 910 +++ + Q ++ + G+ +TG Sbjct: 902 ETQCQEMQQLADRVIA---CRQPG-------QSMEIDLACNGVQITGWLPQV-----QPD 946 Query: 911 G--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 G P + + QL LE A Sbjct: 947 GLLRWR---------PSLLSVAQG--MQLWLEHLVYCASG-----------------GNG 978 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + D + +E++L L +++ + G Sbjct: 979 ESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREGM 1015 >gi|319637621|ref|ZP_07992387.1| exodeoxyribonuclease V [Neisseria mucosa C102] gi|317400776|gb|EFV81431.1| exodeoxyribonuclease V [Neisseria mucosa C102] Length = 1100 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 87/727 (11%), Positives = 188/727 (25%), Gaps = 75/727 (10%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 LA + V ++ + L F G + + + + L+ P Sbjct: 30 LAPEEVVVQSQGMRRYLNVFFARKLGVAANL--KFSLPAGLAWQ-LMRKLVPDVPPLSPF 86 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S L L + +++ + L S + LA +ADI D Sbjct: 87 SPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYR 146 Query: 164 KKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 W D L L +++ W W R ++ + S + Sbjct: 147 PDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQSAPHRVALWEKL 192 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 A+ + + G + P +L+ ++ H + + + + + Sbjct: 193 LAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQYWGEVIDEA-QI 251 Query: 278 STNITSSNTTYSTHPQ--------YSLAKLLDFLDIKREDVKRLGNVSN----------- 318 ++ + + HP L ++ +++ + Sbjct: 252 LKRGDEADLSQAGHPLLASLGKQGRDFFDFLAEVETEQDIQVYEEGKDDTLLHCLQNDIQ 311 Query: 319 ----EMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVALIEADNEREEA 371 R + + ++ D N + P+ V ++ A + E Sbjct: 312 NLIMPPSERLYQQEEGEAGAQQAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLREL 371 Query: 372 I----SIAIALRMSLDENKKKSALITADRNLARRVKLEL------TRFGINIDISAGIPL 421 +++ L+ + D A++T + + + IS Sbjct: 372 QILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQEQAGSQALPYSISDVKLS 431 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG-----FPEKYLSRAKNALELVAL 476 L L+ + + + L++ L L A L + Sbjct: 432 RRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHEAVAGLNVHWG 491 Query: 477 RGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 +L + + V +D + Sbjct: 492 LDQTMREGKDNLFTWQQAVERLALGWMLPEGGYGMWQGVSAWHSNVNQLDVFSGFAEFIR 551 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 T + W + L+ + + ++ ++L+ + Sbjct: 552 TLADMAAQWQEPADVEGWVQRCRDLLEKLFAPDTDDQYA--KQQFEQSLAKWQEEAQLAE 609 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 I I R +D E+ S + + R L F + L GLN+G +P Sbjct: 610 FDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVCLLGLNDGDFP 667 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIA 712 +NT F + E R L + R+ N+ Sbjct: 668 RNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISAREMLYLSYIGRDIRNDAEFAP 725 Query: 713 SRWLQRL 719 S + L Sbjct: 726 SSLISEL 732 >gi|289432505|ref|YP_003462378.1| hypothetical protein DehalGT_0555 [Dehalococcoides sp. GT] gi|288946225|gb|ADC73922.1| conserved hypothetical protein [Dehalococcoides sp. GT] Length = 379 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 88/266 (33%), Gaps = 36/266 (13%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R S+S+I Q + P L + GT H+ + + Sbjct: 1 MRPLSYSQIDQYQSCPLKYRFLYSDGLKPLEK-----GYFSFGTTLHDCAEHFFR--VKV 53 Query: 827 NTPEINHLMKQIIDSHFEKENLPP-HIDIIWRHLFHKISHSFLEHEEKIQSSIE-KIFVN 884 P + + SH+ I+ +R L +I F ++ + V Sbjct: 54 PPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEF---HRIHRADFHMPLAVE 110 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAA 943 + ++ G+ LTG DR+D L SG + I DYK+ E Q + QLSL A Sbjct: 111 HQYTVNLD--GVKLTGKIDRVDKLPSGELCIVDYKSNKDLFSAEYVQD--NLQLSLYQLA 166 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKID-CITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 ++ + V L L+ + + + A L + + + + Sbjct: 167 VEQIWY-----LPVGELCLYHLRSNTVMRCPARSKEVIADARRLVLEVAGKIEKAI---- 217 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 F + E + ++ HL Sbjct: 218 -----FPA----CENNFCPCDFAHLC 234 >gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] Length = 770 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 78/688 (11%), Positives = 195/688 (28%), Gaps = 113/688 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 ++ T +A E+ +T ++ + + Sbjct: 62 NILAITFTNKAASEMSERLQGLTDTRNLW---VSTFHRFCANV----------------- 101 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +++ + L + K + L A+ + I + + Sbjct: 102 LRQRANVVGLQQNFTILDSADQKQAIKQVLSELDFDAAHYPP--GKILATISNAKNDLVS 159 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + E + + + + L+E NA + ++R E+ Sbjct: 160 ADAFNQQFEESVADHFTAV---VARVYPAYQKFLMESNAVDFDDLLLHVVRLFEENEELR 216 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I++ + A R++ ++ + V D W + Sbjct: 217 ARYDERYQYILVDEYQDTNEAQYRIVRALSQNARNLSVT--GDPDQSIYGWRGAKIDNIL 274 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + + L+ K + ++ + + + Sbjct: 275 RFEKDFEDAK---------VIKLEQNFRSTKLILAAADSLITHNRLRKA----------- 314 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRN 397 ++ V L+ + EA SIA +R ++E + A+ + Sbjct: 315 ------KELTTDNDEGEPVELLHFPDSGTEADSIARHIRHLVEEEGRDWSDFAIFYRVNS 368 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 L+R+++L L R + ++AG+ + L I + A +V PL Sbjct: 369 LSRQLELALGRHHVPYQVAAGVAFYQRAEVRDVLQYLELINNPRNRPAFMRVVNTPLRGI 428 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + + ++ + VP R Sbjct: 429 GKTSQNRLMSYAEQHNMSY-------------------LEAAAEADKVPKMSKR------ 463 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 L+ + +++ + NS I D T C Q + + L Sbjct: 464 ------AAASLKAFSRMMSGFSLANSGSVANLIEDVVTQTDYCKQWLSNPSEQDLQRQAN 517 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +E + + I + + ++ +++ + + D + ++ + S + ++ ++ Sbjct: 518 VDELISAARNHDTIYDADTSLE----GFLETTSLVSDLDALEQQNNNSGKVTLMTLHAAK 573 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F + + G+ + + + L +Y + F Sbjct: 574 GLEFPVVYIVGVEQNLL------------PHERSLREGNPREYEEERRLFFVGITRAMQQ 621 Query: 698 IYTRSLRENN-----IPTIASRWLQRLL 720 +Y S R + +PTI S +L + Sbjct: 622 LYVTSSRYRDLHGRSMPTIPSDFLSEID 649 >gi|238909773|ref|ZP_04653610.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1123 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 240/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L ++ + I G + P R + + H Sbjct: 179 LGLPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|322613396|gb|EFY10337.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620988|gb|EFY17846.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624051|gb|EFY20885.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628209|gb|EFY24998.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633328|gb|EFY30070.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636094|gb|EFY32802.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639431|gb|EFY36119.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643706|gb|EFY40258.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648819|gb|EFY45266.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655188|gb|EFY51498.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657981|gb|EFY54249.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664083|gb|EFY60282.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667051|gb|EFY63223.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673100|gb|EFY69207.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677909|gb|EFY73972.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681084|gb|EFY77117.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685680|gb|EFY81674.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194819|gb|EFZ80006.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196570|gb|EFZ81718.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205016|gb|EFZ89999.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207782|gb|EFZ92728.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212665|gb|EFZ97482.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214851|gb|EFZ99599.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222581|gb|EGA06946.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226460|gb|EGA10668.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230660|gb|EGA14778.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234989|gb|EGA19075.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239027|gb|EGA23077.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244615|gb|EGA28621.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247230|gb|EGA31196.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253287|gb|EGA37116.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256406|gb|EGA40142.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262418|gb|EGA45974.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267486|gb|EGA50970.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269110|gb|EGA52565.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1123 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 106/942 (11%), Positives = 242/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 I L+ AD+ D W + L A +T Sbjct: 119 IDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEMLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDVERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|237729783|ref|ZP_04560264.1| exonuclease V subunit gamma [Citrobacter sp. 30_2] gi|226908389|gb|EEH94307.1| exonuclease V subunit gamma [Citrobacter sp. 30_2] Length = 1122 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 107/942 (11%), Positives = 236/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLAQKFSIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ L D L+ Sbjct: 63 PLPASFIWDMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDSDDFALLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSSRAADLFDQYLVYRPDWLTQWEAGRLVEGLGESQAWQAPLWKALVEYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H N Sbjct: 179 LGQPRW-HRANLYQRFIQTLENASECPQGLPSRVFICGISALPPVYLQALQALGKHINIH 237 Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + W + N + S Q Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEERHLPLFRDNQKAEGLFNSDGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNT 342 +L D L + + + Sbjct: 298 PMLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHNIQSDILELESNAVAGVTLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + ++ + V + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRRLELNDTSVTFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + + IS + SLL+ + L+ P Sbjct: 418 YSPFIQSVFGSAPAERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFNIDEEGLRYLRLWVNESGIRWGIDDDNVRELELPPTGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESSQGEWQSVLPYDESSGLIAELVGHLASLLMQLNLWRRGLAQERPLEEWLPICREMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIITEGLGAEYGDAIPLSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF----------- 728 + F A + L + R +N S +Q L+ G + Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELMDYIGQSHYLPGDESLTCDQ 771 Query: 729 -------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRT 769 + Q YL ++ P P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYLPGEQQSYAREWLPAASLSGKAHTDFVQPLPFEMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLETLQRFWAHPVRAFFQMRLRVNFRSEESEIPDTEPFTLEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 N E + + E L + L +I Sbjct: 892 NDAERLFRRFRAAGALPYGPFGEILWDTQRQEMQSLAERIIA 933 >gi|167993493|ref|ZP_02574587.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328452|gb|EDZ15216.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248130|emb|CBG25965.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995135|gb|ACY90020.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159554|emb|CBW19073.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914015|dbj|BAJ37989.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225674|gb|EFX50728.1| Exodeoxyribonuclease V gamma chain ; RecC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131352|gb|ADX18782.1| exodeoxyribonuclease V, gamma subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989864|gb|AEF08847.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1123 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 104/942 (11%), Positives = 240/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMFND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|161506461|ref|YP_001573573.1| exonuclease V subunit gamma [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867808|gb|ABX24431.1| hypothetical protein SARI_04664 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1123 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 103/941 (10%), Positives = 239/941 (25%), Gaps = 113/941 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERDRLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPEIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALK-NEKYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLLYRPDWLTQWEAGKIVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLERATTCPPGLPSRVFICGISALPPVYLKALQALGRHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPGDNSLSFHVCHSPQREVEILHDRLLAILEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VVAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDSVPVSLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKPIRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF------------ 728 E + L + R +N S +Q L+ G + Sbjct: 713 RYLFLEALMSAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772 Query: 729 ------------DNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------PFPPLEAQPRTY 770 + Q YL ++ P + P P T Sbjct: 773 EARVKRHITRLHTRMPFDAQNYLPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPDTL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSQENEIPDAEPFELEGLTRYQLNQQLLNTLVEEE 892 Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 E + + + E + L ++ Sbjct: 893 DAERLFRRFRAAGELPYGAFGEICWDAQRQEMQQLASRVIA 933 >gi|62181504|ref|YP_217921.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129137|gb|AAX66840.1| exonuclease V, subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715987|gb|EFZ07558.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1123 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 103/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732 + F A + L + R +N S +Q L L G + + Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790 + TR +P + + K + P Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 L L+ + F P R + + E+ L + ++ + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 851 HIDIIWRHLFHKISH 865 F Sbjct: 892 DDVERLFRRFRAAGE 906 >gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] Length = 1105 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 101/862 (11%), Positives = 216/862 (25%), Gaps = 104/862 (12%) Query: 156 IDIIETEEKKWEDLHALKNEKYGMW--WLLAADFLKIASK---YWTERLVELNASSPVGY 210 + I+ E+ + L L E W + + + + + Sbjct: 314 LAQIDGLEESFAALMTLPAEPRFAESQWQVLESLFSLLLAADTRLQRLFEQRGEADFIEI 373 Query: 211 QIALMRAEAEHLMKG---------TKGPIIIAGSTGSIPATARLMSTVANHPNGAI---- 257 + MRA + I++ + RL+ ++ A Sbjct: 374 ALRAMRALEDEAGNPTDLLLKLDYRIHHILVDEFQDTSLLQIRLLQSLTAGWQAADGYDR 433 Query: 258 -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + D + L + + + L Sbjct: 434 SLFMVGDPMQSIYRFRKAEVGLF----------------LLASANRAGLPEVEKLTLERN 477 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD--VALIEADNEREEAISI 374 ++++F + V L ++ +EA ++ Sbjct: 478 FRSAPAIVDWVNRAFATIFPDEPDILLGAVEHAAADAALDHAGVVRLSLQQDDEQEAAAV 537 Query: 375 AIALRMSL-----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 A+R L ++ A++ R + LT I +PL+ Sbjct: 538 VEAVRQELGKRTPAGKPQRIAILARSRKHLHSIMPALTAASIAYKAIDILPLNRRPEIRQ 597 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + +LL A+ D + A L++ P + D + Sbjct: 598 MRALLRALLHAADRESWAALLRGPCCGLSTQALHGLL------------------SGDAR 639 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 ++ + + R+ + LA L + L+T + G LS Sbjct: 640 PVLSTLSDETRLAGIDADARDRVRFLIRALAPSLQAAGRVPLRGLLTCAWQRMGMPGLLS 699 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 E + ++ + I E + + Sbjct: 700 P----------------------------EATGNIDAMLALIDELEEGGSIVFSLLDERL 731 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 +L ++ ++S + +L ++ L +D +IL GL + +T F +Q Sbjct: 732 EKLYAEPSLLAGGDESPRVELLTMHGAKGLQWDVVILPGLGKKGSNSDTPVLAFADVPVQ 791 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 ++ A + +++ N + + R Sbjct: 792 EGVHPLIAVRAAVRSSDAVYDLVRDVEK----KRENNELARLLYVACTRAETTLLMFGEV 847 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF-SEIKQLINDPYAVYAR 788 + K + L + +++ T S + + ++ + P Sbjct: 848 SEKSGQAAAGSLLKLLLPDGIEDDCFGADRVEATQSEATTLSAKTPLLRMCSLPLLPDDL 907 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 + +F + G H + + ++ I + + I E L Sbjct: 908 PVTAESETEYFWAGAEAAPVGNAMHAALQHVAERGIERWQAADSAAEVAQISRLLMAEGL 967 Query: 849 PPHIDIIWRHLFHKISHSFLEH-EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907 L K S E+ + ++ G DR + Sbjct: 968 SGRTLSDATARCEAALTRVLASNHAKRILSGEQSDAHCEWALSSHHGGFISHHVIDRSFI 1027 Query: 908 LKSGFVDITDYKTGDNPKK------ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 G I DYKT + PQL AA L R++ Sbjct: 1028 DADGVRWIIDYKTASHEGGDLQGFLAEESTRHAPQLQRYAAILGELE----PQREIRAAL 1083 Query: 962 YIRLKQKFKIDCITNDKKKYSA 983 Y + + SA Sbjct: 1084 YFPMLDALCEVPSAPAIEGESA 1105 >gi|224584784|ref|YP_002638582.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469311|gb|ACN47141.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1123 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 103/915 (11%), Positives = 226/915 (24%), Gaps = 88/915 (9%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLRHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + T+ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHTFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLK 732 + F A + L + R +N S +Q L L G + + Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARRI 790 + TR +P + + K + P Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 L L+ + F P R + + E+ L + ++ + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 851 HIDIIWRHLFHKISH 865 F Sbjct: 892 DDVERLFRRFRAAGE 906 >gi|225077204|ref|ZP_03720403.1| hypothetical protein NEIFLAOT_02259 [Neisseria flavescens NRL30031/H210] gi|224951456|gb|EEG32665.1| hypothetical protein NEIFLAOT_02259 [Neisseria flavescens NRL30031/H210] Length = 1099 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 91/737 (12%), Positives = 198/737 (26%), Gaps = 76/737 (10%) Query: 35 RYDPLNPLL--LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTAD 92 R +PL LA + V ++ + L F G + + + + Sbjct: 19 RIHQASPLDSVLAQEEVVVQSQGMRRYLNVFFARELGVAANL--KFSLPAGLAWQ-LMRK 75 Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 L+ P S L L + +++ + L S + LA + Sbjct: 76 LVPDVPPLSPFSPEVMRWRLLDLFRSEVFQTAPEYENVRLKLESYLHSSASADYQLAGQM 135 Query: 153 ADIIDIIETEEKKWED------LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 ADI D W D L L +++ W W R ++ + S Sbjct: 136 ADIFDQYLVYRPDWIDAWQAGKLLGLGDDED---WQARL---------W--RYLDDGSQS 181 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + A+ + G + P +L+ ++ H + + Sbjct: 182 APHRVALWEKLLAQLDKSVLPQRFFVFGISTIAPMYLQLLHQISKHCDVFVFALNPSSQY 241 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQ--------YSLAKLLDFLDIKREDVKRLGNVSN 318 + + + ++ + + HP L ++ +++ + Sbjct: 242 WGEVIDEA-QILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDD 300 Query: 319 --------------EMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVAL 361 R + + ++ ++ D N + P+ V + Sbjct: 301 TLLHCLQNDIQKLIMPSERLYQQEEGEVGVQSALVQVHDADGNPVCVEPDKLLNDGSVKI 360 Query: 362 IEADNEREEAI----SIAIALRMSLDENKKKSALITADRNLARRVK------LELTRFGI 411 + A + E +++ L+ + D A++T + + Sbjct: 361 VAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIEPYSPFIEAVFGQAHAGSQAL 420 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRA 467 IS L L+ + + + L++ L + L Sbjct: 421 PYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE 480 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL--VD 525 A V ++ D D + +P + + + + +D Sbjct: 481 TVAGLNVHWGLDQTMRDGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLD 540 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + T ++ W + L+ + + ++ + L+ Sbjct: 541 VFSGFAEFVRTLADMAAQWQEPANVESWVQRCHDLLEKLFAPDTDDQYA--KQQFEQALA 598 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + I I R +D E+ S + + R L F + Sbjct: 599 KWQEEAQLAEFDGLLPCKTVIRHIRRFLDSES--QAGFLSGGITFCSMVPMRSLPFKMVC 656 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLR 704 L GLN+G +P+NT F + E R L + R Sbjct: 657 LLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRY--LFLEALISARDMLYLSYIGR 714 Query: 705 E--NNIPTIASRWLQRL 719 + N+ S + L Sbjct: 715 DIRNDAEFAPSSLISEL 731 >gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1198 Score = 108 bits (269), Expect = 6e-21, Method: Composition-based stats. Identities = 73/666 (10%), Positives = 168/666 (25%), Gaps = 54/666 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 116 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L P P + L Sbjct: 117 GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 168 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195 +L + + + E L A E A L+ + Sbjct: 169 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 228 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 AL R L++ +++ + A L+S + Sbjct: 229 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 288 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G V D W + + + + Y + L Sbjct: 289 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 337 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S ++ + + + + + V + EE Sbjct: 338 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 391 Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ + +K A++ ++ L I +++ L + Sbjct: 392 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 451 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L ++ + ++ L+ P + G + L + L + G+ + + + Sbjct: 452 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 511 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + + + + L + + Sbjct: 512 LAAAVEGTDPAEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 571 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ T +V L + E + + A Sbjct: 572 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 631 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + +T+ +L +S+ L +D + + GL G +P + A+ + + Sbjct: 632 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 691 Query: 669 QSDLNL 674 L Sbjct: 692 VLPHAL 697 Score = 53.8 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%) Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G + + W R L ++ R P + S++ +L DP Sbjct: 943 GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 1000 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 AR + + P RGT FH + ++ Sbjct: 1001 DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1047 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + P DI + +F + V P ++ + + G Sbjct: 1048 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1102 Query: 903 DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 D + G +I D+KTG QL++ A +D Sbjct: 1103 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1154 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKY 981 +V + ++ ++ + + + Sbjct: 1155 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1180 >gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 1142 Score = 108 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 83/786 (10%), Positives = 191/786 (24%), Gaps = 93/786 (11%) Query: 181 WL---LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGP 229 W D L++A+ + + +A ++ Sbjct: 367 WQTLEALFDVLRLAAACLQLEFQDQGSVDFTEITTRARQALGTDEDPTDLALVLDSRIQH 426 Query: 230 IIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 +++ + + +L+ + +G D + S Sbjct: 427 LLMDEFQDTSISQYQLLLALTAGWTPGDGRTFFAVGDPMQSIYGFREAEVGLFLQARSQG 486 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 H +L + V + +P S + + Sbjct: 487 L--DHIPLEPLRLTVNFRSQAGIVDWANQAFPRVLPEVEDQMTGSVPYSGSHAFLPPLED 544 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 + +AD + E + +++ + ++ A++ R + L Sbjct: 545 PAVQVHP-------FFDADFQPESSRIVSLVQQARQEDPGGTVAILVRSRPHLQAALPAL 597 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 + G+ PLS L SL A+ +A +++ P + + Sbjct: 598 RQSGLEYQAVEIDPLSRRPVIQDLCSLARALTHPGHNLAWLAVLRAPWCGLDLEDLAILA 657 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 A + + + + L+ Sbjct: 658 A---------------------------------DKDAFIVNRIQDQDILSSLSPQGRRR 684 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + L+ + + + + K L + + Sbjct: 685 LDRVREILLKFLQQRQRSGLRSQVESCWKAL---------GGPDCLHSQSQRRDADVFFR 735 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 L + +E + +D + + G P L ++ +++ L FDT+I+ Sbjct: 736 LLQQRLEH------SPHRVVDELENAVAGLYAGPDTSAGQDLQVMTIHKAKGLEFDTVII 789 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLN--LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 GL ++ R L + G+ T Sbjct: 790 PGLGRAPGSDENPLLVWMERTSPRGHTDLLMAPKTATGEDKDPVYAYIQRLMARKTSHED 849 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 + +R +RL +LG T + L K + Sbjct: 850 GRLLYVACTRARKRLHLLGHTGLTEKGLPSKPAGGSLLESLWPAVKDEFERAAATPRDDA 909 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR--------------TDRGT 810 + S + L L PD GT Sbjct: 910 DTREEHGASAGQTLYRLHQDW-QPPRLPAGITTPSDSRPDPGQESIVFDWAGETIRLAGT 968 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 H + + ++ I+K + + +K + + L + + L H Sbjct: 969 CVHRWMLTMAEEGIHKWSVKKIRGLKSVFARQLMDLGMLEKSLEEGVDLVQQALENTLNH 1028 Query: 871 EEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 + ++ + ++ DR + +G I DYK + Sbjct: 1029 DTGRWILGPRQRARNEYALSGLDNGQAVAVS--MDRTFVDDAGLRWIIDYKISR-HSGKD 1085 Query: 929 AQKLID 934 Q+ +D Sbjct: 1086 VQRFLD 1091 >gi|325686248|gb|EGD28291.1| ATP-dependent deoxyribonuclease subunit B [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1179 Score = 108 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 105/994 (10%), Positives = 244/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + + + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMPESLDDAAAAMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S D + + ++ L++AD+ EA +A + Sbjct: 278 -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLARQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ + L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLAYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSKILQEPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012 >gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1200 Score = 108 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 73/666 (10%), Positives = 168/666 (25%), Gaps = 54/666 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 59 GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 118 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L P P + L Sbjct: 119 GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 170 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195 +L + + + E L A E A L+ + Sbjct: 171 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 230 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 AL R L++ +++ + A L+S + Sbjct: 231 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 290 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G V D W + + + + Y + L Sbjct: 291 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 339 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S ++ + + + + + V + EE Sbjct: 340 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 393 Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ + +K A++ ++ L I +++ L + Sbjct: 394 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 453 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L ++ + ++ L+ P + G + L + L + G+ + + + Sbjct: 454 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 513 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + + + + L + + Sbjct: 514 LAAAVEGTDPAEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 573 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ T +V L + E + + A Sbjct: 574 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 633 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + +T+ +L +S+ L +D + + GL G +P + A+ + + Sbjct: 634 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 693 Query: 669 QSDLNL 674 L Sbjct: 694 VLPHAL 699 Score = 53.8 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%) Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G + + W R L ++ R P + S++ +L DP Sbjct: 945 GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 1002 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 AR + + P RGT FH + ++ Sbjct: 1003 DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1049 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + P DI + +F + V P ++ + + G Sbjct: 1050 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1104 Query: 903 DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 D + G +I D+KTG QL++ A +D Sbjct: 1105 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1156 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKY 981 +V + ++ ++ + + + Sbjct: 1157 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1182 >gi|239944121|ref|ZP_04696058.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 423 Score = 108 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 47/384 (12%), Positives = 95/384 (24%), Gaps = 60/384 (15%) Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + + R ++ A + L+ T + SR+ Sbjct: 7 APAEEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRF 66 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY--------------------- 754 L L V +R +L TT P Sbjct: 67 LTELGV--EPRDVTGRPRRPLAVAALVAELRATTVDPAASDALREAAAHRLARLAALTDD 124 Query: 755 --------------------KRPKPFPPLEAQPRTYSFSEIKQLIN-DPYAVYARRILKL 793 R Q + S S + QL N + R Sbjct: 125 EGQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGR---- 180 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 + G + H ++ + + ++ + + + Sbjct: 181 -EVKADAPATAAQGFGNVVH-VLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQ 238 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG--IHLTGFADRIDLLKSG 911 + FL + + +E+ + + G DR++ G Sbjct: 239 EKDQAR--AALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEG 296 Query: 912 FVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR---KVANLFYIRLKQ 967 + D+KTG P K+ PQL++ A++ G+ ++ + ++L+Q Sbjct: 297 RAYVVDFKTGKGAPTKDEVAAH--PQLAVYQLAVREGAVDEVFDGRRPEPGGAELVQLRQ 354 Query: 968 KFKIDCITNDKKKYSADELSEKSL 991 + K A E Sbjct: 355 PAPKKEGGDAFPKVQAQEPLAGEW 378 >gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 1155 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 88/793 (11%), Positives = 210/793 (26%), Gaps = 68/793 (8%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIA 233 LK+A+ Y + +A +RA + +++ Sbjct: 375 QALFSLLKVAAGYLLLVFRQHGQVDFTEIAMAAVRALGEPEMPTDLALALDYRIHHLLVD 434 Query: 234 GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + + A L+ + +G + D + E + ++ Y Sbjct: 435 EFQDTSSSQAELLQRLTAGWQTGDGRTLFLVGDPMQSIYRFRQA-EVGLFLDIRDSGYFG 493 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 Q + L + + N + R + + S S + Sbjct: 494 QIQMRFLR----LSVNFRSQSGIVEWVNRYFPRILPDTDSVSTGAVSYASSVAFHAASSG 549 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRVKLELTRF 409 + + + ++R EA + + + + A++ +R+ + + L R Sbjct: 550 EAVRIYPYLQ----KDDRAEAEQVGAIVAQARAAQPDGRIAVLVRNRSHLASIVVHLRRK 605 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ L+ + L +L A+ D +A L++ P + + Sbjct: 606 GLRFQAVEIEQLAQRVVIRDLMALTRALVHPADRIAWLALLRAPFCGLSLQDLHTVANT- 664 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + + SL + + L ++ L + + + Sbjct: 665 ------------LPQHVLIDSLRACAGSGVLSEEGGQRVNRVLPILERALMLYDRMSLRR 712 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 C+ + S ++D ++ L+N + +R E + + Sbjct: 713 CVEGIWVSLGGPASVQNETDLAD-AEVYFQLLENFDVTGYRPDIQELDERLVRLFALPDV 771 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ + + + ++ T ++ G P+ ++ L L + L+ + Sbjct: 772 AADDSLQLMTLHKAKGLEFDTVILPGLGKSPRRDQEKLLNWLEFHDQ--SQHPGLLCAPI 829 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 + KN LS + + +A + +H + Sbjct: 830 SAAGSDKNPISAYILSEEKKRTA--------LEEARLLYVAVTRAKHNL------HLLGH 875 Query: 710 TIASRWLQRLLVLGGTDF-FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 +Q L + R + L R Sbjct: 876 LRIDPDMQENDALKPPEDTLLARLWPAVAADFLARSREAAIGDLPASNVHTGLQLVGMVR 935 Query: 769 TYSFSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S + L + + G + H ++ + + Sbjct: 936 LVSGWQPPPLPKAVAVAMHANEAGTTEEPVDFDWAGEPARLVGVVVHCLLHRIGLIGVEN 995 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS-FLEHEEKIQ---SSIEKIF 882 + +K S + + P + + +E E + ++ Sbjct: 996 VDHQDLEALKLAGRSLLIQSGITPRHLEKAVQQVARALRTMCVEDETGRWILSNRHQEAR 1055 Query: 883 VNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK------ETAQKLI 933 + I ++ DR + +G I DYKTG + + Q Sbjct: 1056 CEWALSVPTAIAAGHSISVS-IIDRTFVDAAGVRWIIDYKTGSHTGGSLEEFLDREQLRY 1114 Query: 934 DPQLSLEAAALKA 946 PQL A L+ Sbjct: 1115 RPQLDRYAQVLQR 1127 >gi|15642320|ref|NP_231953.1| exonuclease V subunit gamma [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586153|ref|ZP_01675944.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 2740-80] gi|153817888|ref|ZP_01970555.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae NCTC 8457] gi|153821490|ref|ZP_01974157.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae B33] gi|227082446|ref|YP_002810997.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae M66-2] gi|229507608|ref|ZP_04397113.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae BX 330286] gi|229512196|ref|ZP_04401675.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae B33] gi|229519332|ref|ZP_04408775.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC9] gi|229607114|ref|YP_002877762.1| exonuclease V subunit gamma [Vibrio cholerae MJ-1236] gi|254849445|ref|ZP_05238795.1| exonuclease V subunit gamma [Vibrio cholerae MO10] gi|255746994|ref|ZP_05420939.1| exodeoxyribonuclease V gamma chain [Vibrio cholera CIRS 101] gi|262161464|ref|ZP_06030574.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae INDRE 91/1] gi|298500311|ref|ZP_07010116.1| exodeoxyribonuclease V, gamma subunit [Vibrio cholerae MAK 757] gi|9656888|gb|AAF95466.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549565|gb|EAX59589.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 2740-80] gi|126511596|gb|EAZ74190.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae NCTC 8457] gi|126520983|gb|EAZ78206.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae B33] gi|227010334|gb|ACP06546.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae M66-2] gi|229344021|gb|EEO08996.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC9] gi|229352161|gb|EEO17102.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae B33] gi|229355113|gb|EEO20034.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae BX 330286] gi|229369769|gb|ACQ60192.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae MJ-1236] gi|254845150|gb|EET23564.1| exonuclease V subunit gamma [Vibrio cholerae MO10] gi|255735396|gb|EET90796.1| exodeoxyribonuclease V gamma chain [Vibrio cholera CIRS 101] gi|262028775|gb|EEY47429.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae INDRE 91/1] gi|297541004|gb|EFH77058.1| exodeoxyribonuclease V, gamma subunit [Vibrio cholerae MAK 757] Length = 1148 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 112/985 (11%), Positives = 239/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEDVVEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293 L H I + Q Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVENYLQESMHLS 299 Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAVSPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 1149 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 90/774 (11%), Positives = 184/774 (23%), Gaps = 60/774 (7%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L +A R + + A + ++I + Sbjct: 355 LALAVAQLRLRFADKGEVDFIEIAQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ T+ +G + D + + P + Sbjct: 415 QTQLDLLRTLTLGWQAGDGRSLFLVGDPMQSIYRFRKAEVGLFLEVADIGVGELTPDFLN 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 + + + RS + + ++ + + Sbjct: 475 LTDNFRSQAGIVEWVNQSFAN-LLPKRSDAAAGAIAYSPSTAFHDALPEAAVRFHPAWSR 533 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + E E + AL K A++ R+ + L + GI Sbjct: 534 AGGTPAEEQAEDIAVGLVRQALID-HKGAKHPVAILVRARSHLGNLTRRLAQEGIRCRAV 592 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 +PL+ + L L+ A+ D MA ++++ P L Sbjct: 593 DLVPLALRPVVADLVQLVRALSHPADRMAWLSVLRAPYCGLTLTSLQ------RLFGDDH 646 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ-CITPLV 535 L+ A + + S + D A L+ + + Sbjct: 647 ITPVPVLLERALRMTPATAPAVVSSAPQGSLFDSAPATPDTPSAQALLSADEFERLRQVA 706 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +K + G + + W + L L + ++L L ++ G Sbjct: 707 AVLLDKRNASGAMPFAAWVESLWRRL-----GGPALYAGLSVANDAESLFQLVERLAPHG 761 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + A I + E + I+ +S+ L F+T+IL GL+ Sbjct: 762 AIDPAALDAGISRLFA-----APDAADEDEGAVEIMTMHKSKGLQFETVILYGLHRAPRG 816 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 F + + + R L Sbjct: 817 DQAPLVRFEQSGGRVLFGPVKPRAEAEADPISRYLGAREARRASYEIDRLLYVAATRARK 876 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 L + + L ++ +P + + Sbjct: 877 RLHLVGHVSIDEASGQVKTPPSASLLGRLWPCLPTPQPPAQDQQAEPDAVDAPEWQGEPL 936 Query: 773 SEIKQLINDPYAV-----------YARRILKLDFIPHFKKDPDR---TDRGTLFHNIITE 818 + A A R D H + GTL H + Sbjct: 937 RRVATEGLAQLARQSNVSISAGFGTAERGAWGDGSEHPAWQLEAGYDAAIGTLAHAWLAR 996 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---- 874 + + + + + +P + + L E + Sbjct: 997 IGQDGTHAWPAPALADRLPAMRRQLTRAGIPASQADDAAQAVLETLQATLADERGLWLLS 1056 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 QS + + I A + I + L+ + G I DYKTG E+ Sbjct: 1057 QSGARREWPLIDAAGKVSVIDLALS--------TEDG-WLIVDYKTGRPHPGES 1101 >gi|300361737|ref|ZP_07057914.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri JV-V03] gi|300354356|gb|EFJ70227.1| ATP-dependent exonuclease subunit B [Lactobacillus gasseri JV-V03] Length = 1158 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 78/717 (10%), Positives = 182/717 (25%), Gaps = 114/717 (15%) Query: 359 VALIEADNEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINID 414 + ++AD+ EA +A + + + ++ + + L + I Sbjct: 303 LQPVKADSRYAEAYFVARTIYQQVALNHYRYQDFLVLAPNLSEYETYLTPILRQNNIPFF 362 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALE 472 + + +L + + L+K L ++ + LE Sbjct: 363 NDLQKEMKYHPLVVAVENLQQIFKRDFQTDNVIALMKTQLFIPEWYKSVARYQNDVDLLE 422 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCI 531 L + + + +S E+ E + + + Sbjct: 423 NFVLAHGIKGSLWN-------KPLKNFVDAEVIALDKSEQEVEELERLRQYFISILSKFF 475 Query: 532 TPLVTYKTNKNSTCGNLSIS--DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + K + + + + + D E+ TL+ L Sbjct: 476 EEIEAEKDPQAGVTIFWNFLIKNRVAKRLEAWRKEANDAGDLQLAQQPEQVWSTLNDLLK 535 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + ++ D++ + I + + + + G Sbjct: 536 DYLLVAK--EFSLEQFFDLLISGFSEANFSQIPSTLDAVNISEMGMVQGQGYKQVFIIGA 593 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHDF---EMANGTRHLI 698 P+ F S LN L+ +K + ++ + + Sbjct: 594 TSSNLPQIEKIPGFFSSENLEQLNDGNNTSGYLEDQQKINNLDQNYQFGNALSLASDKIY 653 Query: 699 YTRSL-RENNIPTIASRWLQRLLVL--GGTDFFDNLKKRGQCYLDWTRKLDYTTK----- 750 + + N S + ++LL L +L L + + + Sbjct: 654 ISYPVINTANERLEPSIFYKQLLRLTQAEEFSQHDLPNSAGDLLTFMTNPEASLGYLTYL 713 Query: 751 ----------------------------------QPHYKRPKPFPPLEAQPRTYSFSEIK 776 P PK L S S+++ Sbjct: 714 KSKRAVKVDSILEMTEQKIGEVAQNVLEGSNFKNIPENLSPKLAQELYGDRIETSVSQLE 773 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI----- 831 + + + L L F+ + D G +H L+KK KN Sbjct: 774 TYYQNSFEYFLNYGLHLKKR--FENELDVIQAGNYYHETFDYLVKKIKEKNLNFADLTDS 831 Query: 832 -NHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFV 883 + + ++ + L + H + + + + + + Sbjct: 832 KLTELLIEVREELKEKGRYRQLLNDPFNKYLFHKLDQTTSNVAHYWHSNVNKTTFRPQYS 891 Query: 884 NIPAK--MAIESIG------------IHLTGFADRIDLLK-SGFVD--ITDYKTGDNPKK 926 + + + + L G DR+DL K + V + DYK+ Sbjct: 892 ELSFGKNQKVTGLSYSWKDENNKKKIVDLRGKMDRVDLAKVNDRVLGEVIDYKS----SA 947 Query: 927 ETAQKLI-----DPQLSLEAAALKAGS--FSQIDCRKVANLFYIRLKQKFKIDCITN 976 + + Q+ LK + F+Q V FY + + Sbjct: 948 KKFDLGLFANGISMQMISYLEVLKKNNKFFAQGKNLDVLGAFYQNITSSLERLSSDK 1004 >gi|294102625|ref|YP_003554483.1| hypothetical protein Amico_1643 [Aminobacterium colombiense DSM 12261] gi|293617605|gb|ADE57759.1| hypothetical protein Amico_1643 [Aminobacterium colombiense DSM 12261] Length = 977 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 79/608 (12%), Positives = 160/608 (26%), Gaps = 76/608 (12%) Query: 362 IEADNEREEAISIAIALRMS--------------LDENKKKSALITADRNLARRVKLELT 407 I A + R E ++A L + + + + D L + L Sbjct: 276 IVAGSPRMEMETLARELVLWKNKKGYLSGQEILPAETPWQNIG-MVFDAPLLPLAEEVLQ 334 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 R+ I I+ G+ + T I + NA +++ P Sbjct: 335 RYRIPYSINEGLTVGQTALWDIARRIWNAGEHGWPLGETWDILREPCLAGRE-------- 386 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 DI L ++ L V I Sbjct: 387 ---------IATSPPADIFTLNEKGWIGFLEHAAPERGLDSFKKMC--------LFVKTI 429 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + TP+ + N S L R L E Sbjct: 430 KKGGTPVEILSALYSLAAENPSWGKELSLWAMDHPEFDESIRRLQAALRETEHKVESLGE 489 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 I ++ + E + + T+ L + L I+ Sbjct: 490 LQDRIGPAGQVRFSGSEAVSFLHHWTSMATIWLPPAIKGALSLFIGTPPVLEKNSLWIMP 549 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLN---------LKTAEKYIGQAAHDFEMANGTRHLI 698 + +WP +++ L + L+ L ++ Q F + Sbjct: 550 NITASIWPGKMSESSLLPDRHKLALHDLTGTERGHLPLLKEKRDQREALFRRLVACGEDL 609 Query: 699 Y---TRSLRENNIPTIASRWL-----------QRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + S P S +L + L + + + Sbjct: 610 LILSSPSTDALGKPLPPSPFLGKGVSENWISFPDDMAPLERSLSHLLPQNEETMVQHVEI 669 Query: 745 LDYTTKQPHYKRPKPF-PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + + R P +P S + + P+ +LK++ + Sbjct: 670 GEDASPYGGILRELPTFRGDAPEPLKGHLSALDDYESCPFRFVNLNVLKIE--EPAEPGL 727 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 D G+ H + + + T L+ + +E+ P + + ++ Sbjct: 728 DVRKCGSTLHLLWERVWQAYEQ--TSRPLSLLARQYWEETLEESYPELLRVPQLARHKEL 785 Query: 864 SHSFLEHEEKIQ-----SSIEKIFVNIPAKMAIESI---GIHLTGFADRIDLLKSGFVDI 915 + +Q + + + + ++ + + G+ TG ADRI+ L G + I Sbjct: 786 LLQQVTGLADLQQSMENNGLAGLRLKQFRELDLPILIVDGVSFTGKADRIEYLHDGRILI 845 Query: 916 TDYKTGDN 923 DYK G + Sbjct: 846 FDYKLGKS 853 >gi|303249687|ref|ZP_07335892.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253574|ref|ZP_07535442.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651499|gb|EFL81650.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858954|gb|EFM90999.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1114 Score = 108 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQERDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 +++ L Sbjct: 762 NFSEAL 767 >gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] Length = 1147 Score = 108 bits (268), Expect = 8e-21, Method: Composition-based stats. Identities = 91/843 (10%), Positives = 204/843 (24%), Gaps = 68/843 (8%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + PL + A A+ L + I E + L AL + Sbjct: 321 LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ + + A G+ T Sbjct: 378 DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V + G D + S + A + Sbjct: 436 F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 V + G + S + I E ++ A ++A Sbjct: 495 AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552 Query: 366 NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412 AI +A + ++ L+ V + G+ Sbjct: 553 EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + ++ + L ++ A D + +AT +K PL + A+ Sbjct: 613 VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672 Query: 473 LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 D + L + + L + L+ Sbjct: 673 ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + + + + G ++ Sbjct: 733 EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ ++ L + T + L Sbjct: 782 ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 VW ++ + + L + E++ M HL+ Sbjct: 834 ----VWTGGRTQDCAATLAARFALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767 + + R+ + G + ++ W + P P + Sbjct: 888 TPASWCEMVRIGLERGLGAGEAVETEHGPITIWRDGSTASLAAAAADTAPPEPEVVPDWL 947 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + E + + D + RG L H+++ L + + Sbjct: 948 FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007 Query: 828 TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + ++ K+ + + +I + E Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943 + ++ +E I +TG DR+ +++ G V + D+KTG P + + Q+SL A Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115 Query: 944 LKA 946 A Sbjct: 1116 AAA 1118 >gi|302558546|ref|ZP_07310888.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000] gi|302476164|gb|EFL39257.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000] Length = 536 Score = 108 bits (268), Expect = 8e-21, Method: Composition-based stats. Identities = 62/447 (13%), Positives = 115/447 (25%), Gaps = 29/447 (6%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + ++RA ELR G + P + Sbjct: 95 TLVESVAARIARGGDPERILVLTFSRRAAVELRDRMALRIG--AAHAPQATTFHSFCYAL 152 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 153 IRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQVDLER---LGLAHVRWPDELRACLTTR 209 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L A W A+ FL + V A Sbjct: 210 GFADEVRAVLARSRELGLGPGALDAFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAEL 269 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G ++ D Sbjct: 270 VHRAVLLARRPEIAGQLAARYDAVYVDEYQDTDPAQVRLLHALAG---GRTLVAFGDPDQ 326 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + ++ L R L + + R Sbjct: 327 SIYAFRGADVGGILEFPHAFPRAD----GRPAPVEVLRTSRRSGAALLEATRRVTRR--- 379 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK 386 +P P+ ++V E +IA LR + E+ Sbjct: 380 -----MPLPRLPAEKVRAHRELTPHRDGGRAEV--YTYPTSGTELDNIADILRRAHLEDG 432 Query: 387 ----KKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLN 441 + + L+ A V+ LT G+ +D+ PL + L + L A+ Sbjct: 433 VPWNEMAVLVRAGARTLPTVRRALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVAAAE 492 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAK 468 T A + Sbjct: 493 ADGPADTGTDAAAAPCWLATETALTLL 519 >gi|307246818|ref|ZP_07528884.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255801|ref|ZP_07537603.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260253|ref|ZP_07541961.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852289|gb|EFM84528.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861264|gb|EFM93256.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865700|gb|EFM97580.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 1114 Score = 108 bits (268), Expect = 8e-21, Method: Composition-based stats. Identities = 87/786 (11%), Positives = 199/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSGEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + T + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWTESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNERRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 +++ L Sbjct: 762 NFSEAL 767 >gi|147673707|ref|YP_001217829.1| exonuclease V subunit gamma [Vibrio cholerae O395] gi|262168314|ref|ZP_06036011.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC27] gi|146315590|gb|ABQ20129.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O395] gi|227014218|gb|ACP10428.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae O395] gi|262023206|gb|EEY41910.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae RC27] Length = 1148 Score = 108 bits (268), Expect = 8e-21, Method: Composition-based stats. Identities = 113/985 (11%), Positives = 241/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293 L H I + + Q Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESMHLS 299 Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSDLRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P A + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|307257990|ref|ZP_07539743.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863537|gb|EFM95467.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1150 Score = 108 bits (268), Expect = 8e-21, Method: Composition-based stats. Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 49 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 95 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 96 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 151 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 152 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 210 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 211 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 269 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 270 RIFVLGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 329 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 330 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 385 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 386 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 445 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 446 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 505 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 506 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 565 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 566 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 621 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 622 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 679 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 680 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 737 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 738 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 797 Query: 740 DWTRKL 745 +++ L Sbjct: 798 NFSEAL 803 >gi|157372051|ref|YP_001480040.1| exonuclease V subunit gamma [Serratia proteamaculans 568] gi|157323815|gb|ABV42912.1| exodeoxyribonuclease V, gamma subunit [Serratia proteamaculans 568] Length = 1123 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 108/982 (10%), Positives = 236/982 (24%), Gaps = 134/982 (13%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ + + V + Q L+ + E G + I Sbjct: 11 DLLKTLTSALIAREPLA---------DPFQQEVVLVQSPGMAQWLQMQLAEQFGIAANIA 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L S +L L+ L + + Sbjct: 62 ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLTQPEFAPLQHY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKY--GMWWLLAAD 186 L+ LA +AD+ D +W E + L + W + Sbjct: 115 LTDDGDKRKIHQLAGRVADLFDQYLVYRPQWLESWQKGERIDGLAEAQQWQAPLWARLVE 174 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATAR 244 +T+ L + + A + P + I G + P Sbjct: 175 --------YTQELGQPEW-HRANLYRRFISALDKAETPPAGLPPRVFICGISALPPVYLE 225 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIW----------NTITEKSTNITSSNTTYSTHPQY 294 + + H + ++ + I S + Sbjct: 226 ALQALGKHIDIHLMFTNPCRYYWGDIQSQSFLAKLQSRKRQHYRDKTEYSLFRDPDNASA 285 Query: 295 SLA---------KLLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKS 330 LL D L + N ++G + + Sbjct: 286 LFNDAGEQDLPNPLLASWGKLGRDHHFLLSQIESSEEVFAFVDIPADNLLHGIQHDMLEL 345 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENK 386 T + + ++L + + E + L L + Sbjct: 346 KNSAVIGTTPETLESSDTKRRLDPADRSISLHACHSPQREVEVLHDQLLSMLADDPELTP 405 Query: 387 KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + ++ AD + + + IS SLL+ Sbjct: 406 RDIIVMVADIDSYTPYIQAVFGNASPERYLPFAISDRKASQAHPALQAFISLLDLPQSRF 465 Query: 442 DFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLV 492 + L++ P +F E+ L ++ + +R + ++ +L + Sbjct: 466 TSEQVLALLEVPALAARFSIREEGLRLLRHWVGESGVRWGLDDDNVRELDLPATGQHTWQ 525 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSIS 551 + + + LV + + L + S+ Sbjct: 526 FGITRMLLGYAMDSNAGDWQGVLPYDESSGLVAELAGQLAELLAALSRWRQRLGQARSLP 585 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 +W L L+ + L E + + LF + D + Sbjct: 586 EWQPLCRQLLETFFEQDGETEVVLALIE--REWNRLFEFGLAARYPDDVPLSILRDELAA 643 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 +D E + + + + R + F + L G+N+GV+P+ F Q Sbjct: 644 RLDQERISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVK 702 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG----- 724 ++ + + + L + R +N S + LL Sbjct: 703 RGDRSRRDDDRYL-FLEAILSAQQRLYISFIGRSIQDNSERYPSVLVTELLEYLEQSYCL 761 Query: 725 --------------------------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 +N + L ++ P Sbjct: 762 PGDEHLDADGSARLVGKHLLNWHSRMPFAAENFLPDTEAQSYAAEWLPAADRRGAAHPPF 821 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P L + S ++ + P + + L + FI + PD N+ Sbjct: 822 NQPLLPDEKTQVSLDDLLRFYRHPIRAFFQLRLGVSFILEETELPDEEPF--TLDNLSRY 879 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 ++ + + I+ + E +S Sbjct: 880 QFNSQLLNTLIDGEDASRLFQRVRAAGGLPFGPFGEIYWQKQQEEMSELAEQVRAERSEG 939 Query: 879 EKIFVNIPAKMAIESIGIHLTG 900 ++ I+ G+ ++G Sbjct: 940 ------HSLELDIDIAGVRISG 955 >gi|297192221|ref|ZP_06909619.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|297151257|gb|EDY64039.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 1190 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 72/667 (10%), Positives = 162/667 (24%), Gaps = 65/667 (9%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV----------------EEKF 89 V T +A EL + P GD F Sbjct: 18 QVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPGDPSSAFGGDTPVGEPRISTYHAF 77 Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 LL + L + RLL A + L + P P + L Sbjct: 78 AGQLLKDHGLRIGLEPTARLLADATRYQLAARVLREA--------PGPYPALTRSFPSLV 129 Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKY 194 +L + + L E A L + Sbjct: 130 SDLLALDAELAEHLVPPGRLKEYDTELLRTLEGARLTNVDLRKVPEAAEARRELLDLTLR 189 Query: 195 WTERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + + AL R E +++ +++ + A L+S + Sbjct: 190 YRAAKRQRDLLDFGDQIALSAELALTRPEVGTVLRDEFRVVLLDEYQDTSVAQRLLLSGL 249 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G V D W + + + + +S L Sbjct: 250 FGQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPVHFPHSDGRPADRYSL---------- 299 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 S ++ + + + + + V E Sbjct: 300 -------SENRRSGGRLLHLANGLATPLRAMHEGVEALRPAPGAERDGIVRCALLPTHAE 352 Query: 370 EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 E +A ++ + K+ A++ ++ L + +++ L Sbjct: 353 EIEWLADSIAHLVRTGKEPGEIAVLCRTAGDFPEIQGALVARDVPVEVVGLSGLLHLPEV 412 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L ++ + ++ ++ P + G + L + L + + + Sbjct: 413 ADLVAMCEVLQDPGANASLVRILTGPRWRIGPRDLALLGRRARLLVHH--ASADDDPERR 470 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L + V + + S ++ + L + + + Sbjct: 471 LAAAVEGTDPAEIISLADALDTFLESAGGEDDGLPFSAEARVRFARLAAELRDLRRSLAD 530 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + ++ T V L E + + A Sbjct: 531 PLMDVLHRVLSTTGLEVELSASPHALAARRRETLANFLDIAAGFAALDGEATLLAFLGFL 590 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + +T+ +L +S+ L +D + + GL +P + A+ + S+ Sbjct: 591 RTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKHFPNDQAREAWTSQS 650 Query: 668 MQSDLNL 674 L Sbjct: 651 KVLPHAL 657 Score = 58.8 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 33/256 (12%) Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + + W R LD + +R + P + S S++ +L DP Sbjct: 949 EREEALTPEEARAVASWDRDLDALAGE--LRRTRATVRDVLVPASLSASQLLRLAADPDG 1006 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 A+ + + P RGT FH + ++ Sbjct: 1007 F-AQELARPMPRPPQ----PAARRGTRFHAWVESRFEEMPLP---------------MLG 1046 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + LP D ++ E + P + + + G D Sbjct: 1047 PDELPGGADEHDIADEQDLAALKDAFERTPYARRTPYRDEAPFQFTLAGR--VVRGRIDA 1104 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 + G +I D+KT N + QL++ A +D ++ Sbjct: 1105 VYRTGEGTYEIVDWKTARNGVADP------LQLAVYRLAWAEQHGIPLDAVT---ATFVF 1155 Query: 965 LKQKFKIDCITNDKKK 980 ++ + + Sbjct: 1156 VRTGEIVHPDGLPDRA 1171 >gi|153825989|ref|ZP_01978656.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-2] gi|149740306|gb|EDM54447.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-2] Length = 1148 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 115/985 (11%), Positives = 250/985 (25%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + ++ Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ + T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLSQTQSMDQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727 + + + L + R +N + S + LL L G + Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772 Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762 ++ + T + + + R + + Sbjct: 773 LESDDSGRRLLEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + + E+ + Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQRAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|152990114|ref|YP_001355836.1| hypothetical protein NIS_0365 [Nitratiruptor sp. SB155-2] gi|151421975|dbj|BAF69479.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 731 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 104/333 (31%), Gaps = 49/333 (14%) Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + ++ LESR ++ +++ NE PK +++ FL ++ L T Sbjct: 378 FDDVRGGKVTVMEMLESRGCRYEGVVIVDFNEEAVPKIGSEDLFLDTNLRKKTGLPTMTD 437 Query: 680 YIGQAAHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 H + + + + + SR+ L + KR + Sbjct: 438 KESLQKHYYYQLMRYAKKVALSYVKN---EESDISRFFYELPFQK----QQEVPKRYENV 490 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 L +T+ + P + + ++ L+ P Y R I ++ Sbjct: 491 L-YTKTQKENVYEKDATFKLPK--------VLTPTTLEVLLRCPLRYYLRYIEQIK---- 537 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 P G H I E + R ++ + ++ +R Sbjct: 538 ---GPKEKIVGFDIHEAINEAVASRPES--------VQDYFEKIMQRLTKNVSRYEEYRL 586 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE------SIGIHLTGFADRIDLLKSGF 912 +E EEK++ ++ F + K++IE L ADR+ G Sbjct: 587 R--------VEWEEKLRKFAQEDFSLLRGKVSIEKNHGRAFGNFILEARADRVVKR-DGK 637 Query: 913 VDITDYKTGDNPKKETAQKLID--PQLSLEAAA 943 + I DYKT + + Q A Sbjct: 638 IFIYDYKTNKTGNYLNVYEKDENKLQAEFYAYI 670 >gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] Length = 1147 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 92/843 (10%), Positives = 203/843 (24%), Gaps = 68/843 (8%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + PL + A A+ L + I E + L AL + Sbjct: 321 LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ + + A G+ T Sbjct: 378 DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V + G D + S + A + Sbjct: 436 F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 V + G + S + I E ++ A ++A Sbjct: 495 AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552 Query: 366 NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412 AI +A + ++ L+ V + G+ Sbjct: 553 EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + ++ + L ++ A D + +AT +K PL + A+ Sbjct: 613 VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672 Query: 473 LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 D + L + + L + L+ Sbjct: 673 ETLEDALTRHAQAGDGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + + + + G ++ Sbjct: 733 EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ ++ L + T E L Sbjct: 782 ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTAEGPLPP-------- 833 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 VW ++ + +S L + E++ M HL+ Sbjct: 834 ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767 + + R+ + G + ++ W + P P Sbjct: 888 TPASWCEMVRIGLERGLGDGEAVETEHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + E + + D + RG L H+++ L + + Sbjct: 948 FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007 Query: 828 TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + ++ K+ + + +I + E Sbjct: 1008 AEAAERFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943 + ++ +E I +TG DR+ +++ G V + D+KTG P + + Q++L A Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVNLYARL 1115 Query: 944 LKA 946 A Sbjct: 1116 AAA 1118 >gi|293449146|ref|ZP_06663567.1| exodeoxyribonuclease V [Escherichia coli B088] gi|291322236|gb|EFE61665.1| exodeoxyribonuclease V [Escherichia coli B088] Length = 919 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 96/916 (10%), Positives = 214/916 (23%), Gaps = 90/916 (9%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANID---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L L+ ++ + L+ Sbjct: 63 PLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLDREDFTLL----RHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---WWLLAADFLKIASKYWT 196 L+ AD+ D E L + L A +T Sbjct: 119 SDKRKLFQLSSKAADLFDQYLVYR--PEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYT 176 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPN 254 L + + + I G + P + + + H Sbjct: 177 HELGQPRW-HRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIE 235 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----------------- 297 ++ + I + ++ Sbjct: 236 IHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDV 295 Query: 298 --KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMR 340 LL D L + + + Sbjct: 296 GNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAVAGVNI 355 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + S + + + E + L L+E+ + ++ AD Sbjct: 356 EEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDPTLTPRDIIVMVADI 415 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 416 DSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLPDSRFVSEDVLALLD 475 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNN 502 P+ F E+ L + + +R + ++ +L+ + Sbjct: 476 VPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGY 535 Query: 503 THVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S + + L + + + L+ + + +W + L Sbjct: 536 AMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDML 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + ++ ++ + D + + +D E + + Sbjct: 596 NAFFLPDAETEAA--MTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 654 FLAGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGF--DLMSQKPKRGDRSRRD 710 Query: 682 GQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNL 731 E + L + R +N S +Q L L G + + Sbjct: 711 DDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSHYLPGDEALNCD 770 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN--DPYAVYARR 789 + + T P +P + + K P Sbjct: 771 ESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFVQPLPFTLPE 830 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + L+ + F P R + + + L + I+ + Sbjct: 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVE 890 Query: 850 PHIDIIWRHLFHKISH 865 F Sbjct: 891 QDDAERLFRRFRAAGD 906 >gi|257063576|ref|YP_003143248.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476] gi|256791229|gb|ACV21899.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476] Length = 889 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 69/645 (10%), Positives = 161/645 (24%), Gaps = 101/645 (15%) Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 L + + G + + + K PL Sbjct: 183 RVHALDQSIEASFLFPGGAYARPSLVAD-----QIAASCAEGATAFVACKKPL-DVYEAC 236 Query: 462 KYLSRA-------KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 L A + + + + KS R A + P Sbjct: 237 APLLAAQGITCGVRARKRFFDTAFGRAIVSLYEFKSADECRPALLTDFLTSPFSGVGRRT 296 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 A + + ++ L I ++ + + R + Sbjct: 297 AFDLDARMRGNRLITKEECLARVLGESEQARYCDEIVSDLDASILIGSLIGSMQGRSDWS 356 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 E + +++ET + + + V + + Sbjct: 357 DACRVEQIAAAFALRRVMETARACGLDLPCAMMFLE--FMYVNVSQATAEPPQVLFATQQ 414 Query: 635 E---SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 E R +FD ++ L+ + + + + L + + + + + +F Sbjct: 415 EASNYRPGSFDVVVATELDSVSYAVKNRTDSVTT--LFEKLGIDSKDDALARVRRNFVAT 472 Query: 692 NGTRHLIYTRSLRENNI---PTIASRWLQRLLVL----------------GGTDFFDNLK 732 + + N+ PT LQ + + ++ Sbjct: 473 ENLARVQFVCERAMNDEDANPTYPCIPLQEFIDCYRENPSATDDVDETYGLPQELLATVR 532 Query: 733 KRGQCYL--DWTRKLDYTTKQPHYKRPKPFPPLEAQPRT----------------YSFSE 774 +G+ L + L Q RP + S S+ Sbjct: 533 SKGEEALYENAAHDLQPQQPQVVVDRPVAGQVSDGSRHLVVLPRIDRTCVVETPCLSPSQ 592 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI----KKRINKNTPE 830 I+ + P+ +A R L+L + + G H ++ + ++ + T + Sbjct: 593 IESYLECPHKWFAHRRLRL---EGIDEGFGAVEMGDFAHAVLNDFYTVFMEEGHARVTAD 649 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH-----------------SFLEHEEK 873 +++ + F+ R +++ F+ E Sbjct: 650 NRDRAVEVLAACFDGRRAIQAEPAHGRQRRNRLVATTSVEELQIDALKDKLVRFVLREAN 709 Query: 874 IQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + +A ++ G+ + G DR+D+ ++G + DYK Sbjct: 710 MLPDFHPHLLEYEIPIAQAVDYAGVKVFGRVDRVDIDEAGRAVVIDYK----GSVSERYA 765 Query: 932 LI---------DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 Q + A L+ V YI + Sbjct: 766 AFGEGGVLANGKVQALIYAQLLRR-----HLGLDVRGALYISYGK 805 >gi|170760102|ref|YP_001785766.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str. Loch Maree] gi|251764551|sp|B1KUY8|ADDB_CLOBM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|169407091|gb|ACA55502.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str. Loch Maree] Length = 1147 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 30/255 (11%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK-- 826 S S +++ P+A + + LK F D G H+I+ + + K Sbjct: 774 KISVSRVEKFSQCPFAYFVQYGLKAKDRKIFN--LSYPDLGIFMHSILEKFSHELEKKGI 831 Query: 827 -----NTPEINHLMKQIIDSHFEKENLP---PHIDIIWRHL-FHKISHS--FLEHEEKIQ 875 + + ++I+ + ++L + KI +L E + Sbjct: 832 DWDTMDLNWAEEEIDKLINEELDNKSLDILNSSKRYEYVTKSVKKILKRSIWLIGEHIKR 891 Query: 876 SSIEKIFVNIPAKMAIE----------SIGIHLTGFADRIDLL-KSGFVD--ITDYKTGD 922 + + + + + + ++L G DR+DLL K G I DYK+G Sbjct: 892 GNFKPSYYELSFDIDGDYPPIAMELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGT 951 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 K + QL + A L + + L Y++L + + K+ Sbjct: 952 KEFKLSDVYYGLQLQLLIYLDAILTELAERFGIDGEPGALLYLKLDDPIVKNIVDMSDKE 1011 Query: 981 YSADELSEKSLKNLI 995 + +K LI Sbjct: 1012 IEKSIIKNLKMKGLI 1026 >gi|229513961|ref|ZP_04403423.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TMA 21] gi|229349142|gb|EEO14099.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TMA 21] Length = 1148 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 113/985 (11%), Positives = 243/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D W+ + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWDAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++++ G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMVLDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|226358111|ref|YP_002787850.1| ATP-dependent nuclease, subunit B (AddB); UvrD-like DNA helicase C-terminal domain protein [Deinococcus deserti VCD115] gi|226319754|gb|ACO47748.1| putative ATP-dependent nuclease, subunit B (AddB); putative UvrD-like DNA helicase C-terminal domain protein [Deinococcus deserti VCD115] Length = 897 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 93/696 (13%), Positives = 183/696 (26%), Gaps = 91/696 (13%) Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGI- 419 E + E S +R LD+ A+I ++ R +S G Sbjct: 254 EFPDIESEVRSCLRQVRSWLDDGVRADHLAVIVRHEATYLAALADVAREYAVPLVSGGQL 313 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 PL T S+L + ++A + + A ++ HPL + +RA L Sbjct: 314 PLLHTPLGSLLQAWIDAHAREWRYSATRRVLTHPLLRLSVDALARARALQPGCPSGLGVW 373 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 D +D+ + R + + ++ L + Sbjct: 374 NADLDWLDVPEDTTWLEGLGVLQRLLVDLGVRDQCQHDPA-------LNVAVSLLGDRLS 426 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + S L LQ + + L + Sbjct: 427 AEARRTDACSREQLLGLVRHVLQTTTMPVLLGRGGVRVANPLAAL------------GRR 474 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + + + L + + S+T + + L Sbjct: 475 FDHVWVLGVSDTLFPARSADHPLIDSATRRRWSRSGVHVPDVSALA-------------- 520 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQR 718 + +A +A L+ +R R + S + R Sbjct: 521 --------------------SVEEALFLGAVAGAGHELVISRPRRGPDGRELRPSPFWSR 560 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRK---------------LDYTTKQPHYKRPKPFPPL 763 L L + L + + P+ Sbjct: 561 LGEGKAEAAPLALGSEMERLLTLALAGQTLPGSIQGKVQVERERDAGHFGPHSGQLDSPI 620 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + R +S S++ Y + +++L+LD DR GTL H + ++ R Sbjct: 621 RVEERRWSPSQLHAAGACRYRWFTQKLLRLDEPLDPDLVEDRRVTGTLLHAALEAALQDR 680 Query: 824 INKN-TPEINHLMKQIIDSHFEKENLPPHIDI-----IWRHLFHKISHSFLEHEEKIQSS 877 + T + ++ + + + + R + + + + Sbjct: 681 AAGDTTEDRVRRAEEALKRKERQLWASGELRGGPLWPVDREEIRRTAVRAVRSPAFVPPG 740 Query: 878 IEKIFVNI--PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLI 933 + + + L G DR+D G + +TDYKTG K + Sbjct: 741 WVPVHLEERREFTVRAGDATFALVGIVDRLDQTPDG-LTVTDYKTGSYVSKVVFEGVMNL 799 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 + QL L AL A + NL + + +K Y + K Sbjct: 800 EVQLPLYMEALGAAGGRYLSIENAENL------PEAAGPAAESPRKSYRWAQHQAKVSLF 853 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLAR 1029 L + T L G ++ + R Sbjct: 854 LENLATALAQGNV--APSPDHKREACAYCAVQPVCR 887 >gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] Length = 1244 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 78/789 (9%), Positives = 187/789 (23%), Gaps = 73/789 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + + P G+ + F Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAIDPDNPPGEPLISTYHAFA 116 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + YP S P ++ + L Sbjct: 117 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA-PGPYPALTRSFPDLVSDLLALDS 175 Query: 151 NLADIIDI------IETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVEL 202 LA+ + + E L N A L + + E Sbjct: 176 ELAEHLVRPTEVQAFDAELLDTLAGVRLGNADLRKVPEAAAARRSLAGLVERYRAAKRER 235 Query: 203 NASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + E +++ +++ + A L+S + +G V Sbjct: 236 DLLDFGDQIALSAALSGLPEVGRILREEFRVVLLDEYQDTSVAQRVLLSGLFGGGSGHPV 295 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D W + + + ++ ++ + L S Sbjct: 296 TAVGDPCQAIYGWRGASVANLDDFPAHFPHADGRPAARQAL-----------------SE 338 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 ++ + + + + + V EE IA ++ Sbjct: 339 NRRSGGRLLDLANGLAAPLRAMHAGVEALRPAPGAEREGQVRCALLRTHAEEIGWIAESI 398 Query: 379 RMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + K+ A++ ++ L + +++ L + L ++ Sbjct: 399 AHLVRTGKEPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEVADLVAVCEV 458 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + ++ L+ P + G + L + L + R +++ D+ ++ Sbjct: 459 LQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVSHTRVDEDDPDVRLAAAVEGVDP 518 Query: 497 ATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + ++ + L + + + + Sbjct: 519 TEVVSLADALDTFLELPMEAGHEDDGLPFSSDARVRFARLAAELRDLRRSLADPLMDVLH 578 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 ++ V L E + + A + Sbjct: 579 RVLAVTGLEVELSASPHALAARRRETLANFLDVAASFAANEPETSLLAFLGFLRTAAQYE 638 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF----------- 663 +T+ +L +S+ L +D + + GL G +P + + Sbjct: 639 KGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHPL 698 Query: 664 ------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT----RSLRENN 707 + E + + + + Sbjct: 699 RGDAATLPEVESWDSRGLRGFHEAMKEHQLTEELRLGYVTFTRPRSLLLGSGHWWGPSQK 758 Query: 708 IPTIASRWLQRLLV-----LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 P S +L L G + + G+ Sbjct: 759 KPRGPSDFLVALYAHCAAGHGEIEAWAEPPAEGEENPALLAASADHAWPLPLDEAALARR 818 Query: 763 LEAQPRTYS 771 A + Sbjct: 819 RAAAETVLA 827 Score = 63.8 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 59/549 (10%), Positives = 122/549 (22%), Gaps = 47/549 (8%) Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 + A ++ HPL + + K +L+ + Sbjct: 682 QGREKWTAQGKVLPHPLRGDAATLPEVESWDSRGLRGFHEAMKEHQLTEELRLGYVTFTR 741 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + HW ++ + + LV C + + Sbjct: 742 PRSLLLGSGHWWGPSQKKPRGPSDFLVALYAHCAAGHGEIEAWAEPPAEGEENPALLAAS 801 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + LDE E + + + A D T Sbjct: 802 ADHAWPLPLDEAALARRRAAAETVLAHLEHTASLASASAAEAAAPRAAHDPFTHEDPDWP 861 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + D L G + + + + Sbjct: 862 PPDEEPPYDPDEEPPYGPPDDDPLDGLPEEEPFPGPPEEGDEDGYVYADHEEEPGGGTGS 921 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + + R + + + Sbjct: 922 R----------SVGRPADRPVVPHQAPPPGTQSGPER-IPHSRTADVPGGTPLTPEEART 970 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 W R LD T + R + + + S++ +L DP + A+ + + P Sbjct: 971 LASWDRDLDALTGELLRARAGVTEVVLPA--SLTASQLMRLAEDPDGL-AQELARPMPRP 1027 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 RGT FH + + E +I Sbjct: 1028 PQ----PAARRGTRFHAWVESRFEALRLPMLE--------------PDELPGTEAEIADE 1069 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG---FVD 914 + +F + V P ++ I + G D + G + Sbjct: 1070 RDLEALKEAFARTPYAHR---TPYRVEAPFQIGIAGR--VVRGRIDAVYREGEGGTARYE 1124 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 I D+KT P + QL++ A ++ A Y+R + + + Sbjct: 1125 IVDWKTNRAPTADP------LQLAVYRLAWAEQRGVPLERV-TAAFVYVRRGEVVRPPDL 1177 Query: 975 TNDKKKYSA 983 + Sbjct: 1178 PGRAELERL 1186 >gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z] gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z] Length = 1057 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 93/839 (11%), Positives = 207/839 (24%), Gaps = 129/839 (15%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGSTG 237 S+ + + + + + I++ Sbjct: 311 AALGRVASAVSERTVREKQQRGVLDFDDLIQKTRDLIENDAVQKTLNARYRYILVDEVQD 370 Query: 238 SIPATARLMSTVANHP-NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + P ++ + P + D ++ N + Sbjct: 371 NDPVLTDIIRILCGDPKENNRLFIVGDAKQSIYLFRGADVSGFNAFQTVFA--------- 421 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-MRNTDILENKIPNIQKC 355 D L + +++ F P+ Sbjct: 422 -----------NDPVELDTSFRTVPEIIRLVNHVFSSVFADPKEIWEAGYGELTPHRAGH 470 Query: 356 FSDVALIE-------ADNEREEAISIAIAL-----RMSLDENKKK----------SALIT 393 V LI A++ R EA ++A + R L K A++ Sbjct: 471 SGSVTLIRLPTGETKAESMRREARTLASWIFDTVSRKKLSVYDKDGTCRPARFGDIAVLI 530 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 R +++ L +G+ G T+LL AI + + + ++K P Sbjct: 531 EARTHMDKLRHALESYGVPYTEEKGYSFYQKQEVFDFTNLLKAIVYPEEDIPLYGVLKSP 590 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 E + A + ++ R+ + Sbjct: 591 YFGISDAELCRAAAGSGRP-------------------LIWRLRNYATANPDSKIGKAVG 631 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + A + + + ++ L+ G + T L + P Sbjct: 632 DLARWHAEIGTEPFVPFLSRLIAESGIAAVYGGLPFGREATANLEK-LVAIARSRSMNRP 690 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 +E G + + + E + + + + I+T P + Sbjct: 691 FSVYEYLGILDTCMEEEFDEREGMVPSEEDDRVKILTVHASKGLEYPILA-LCFAGTGDG 749 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 L+ FD + G+ + + + + L + K + + F +A Sbjct: 750 LKVSAPVFDAELGVGIPVRLAGEGEGLSFVI-----ECLKPEMKAKLLAERKRLFYVAMT 804 Query: 694 TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 S + + +L + G L + + L + Sbjct: 805 RARDHLVISGTDGKKGPETNSFLS--MYDAGISGCPYLPELITDCVAEPGDLCRIRPKVP 862 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 P + + S + + + RGT H Sbjct: 863 DGWTDTPLPTKEEEAAQSLTA-----------------AVRNRTPSAAEEAAMLRGTALH 905 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + D+ ++ LPP + + +FL Sbjct: 906 EVFEGKP------------------ADAAVKRYGLPPAAAEEFAAKY----AAFLASPLM 943 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 ++ + G L G DR+ + G I DYKTG P K ++ Sbjct: 944 QNAAKSICEQEVAFSFE----GTPLNGVIDRLVQYEDGSWMIIDYKTGR-PSKMELER-Y 997 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + QL++ K + + Y+ ++ + ++EK + Sbjct: 998 ESQLAVYFLWAKR-----LFGKDPEVCLYL---SDKNEVVSFTMDEERAMGLVAEKMWE 1048 >gi|307262384|ref|ZP_07544030.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306867932|gb|EFM99762.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 1114 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 +++ L Sbjct: 762 NFSEAL 767 >gi|300812421|ref|ZP_07092851.1| putative ATP-dependent nuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496588|gb|EFK31680.1| putative ATP-dependent nuclease subunit B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1179 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 105/994 (10%), Positives = 246/994 (24%), Gaps = 166/994 (16%) Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY-PESPLSLPIS 141 + ++ + + + L ++I R++L + + Sbjct: 71 SFSRLAWFFFKKADLLMSESLDDAAATMILEQIIDKRRDELLLFKNSHANSGMIKQVYST 130 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 +L ++++ L NE L + + + E + E Sbjct: 131 ILQVHTGQLDLGNLLERAA----DPAVALDLDNET-----RDKLHDLDLIYQDFLEIVSE 181 Query: 202 LNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + ++ I L + A ++ + + M +A + Sbjct: 182 KHFATKDELNIQLNQLLASRPDLVSQASFYVTDFSHFSIQEKMTMQLLAAFASEMTF--- 238 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEM 320 T S + Y + K + L Sbjct: 239 --------------AFKTADGSVIEPAAGEYDYVVQKTIKDLTGYFSAHDFAW------- 277 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R + S D + + ++ L++AD+ EA +A + Sbjct: 278 -EREKIASPVSPARDLNQAWQGQGQPD--------LDNLQLVKADSRYAEAYFVARTIYD 328 Query: 381 SLDENK---KKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + ++ + L + I + +L +L Sbjct: 329 EVALKGCQYRDFLVLAPNLQEYETYLAPILRQNQIPFFDDLQQQMKYHPLVLLLENLGKL 388 Query: 437 IFKLNDFMAIATLVKHPLAKFGF--------PEKYLSRAKNALELVALRGNKNSYDIMDL 488 + + D A+ +++K L + E R + LE AL Sbjct: 389 LQQAGDTPALLSIMKTRLLIPDWYLEGDAEAGEAAYLRDVDQLENFALAHGIKYSLWQKP 448 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + W + L D + I+ L + ++ + + Sbjct: 449 LKDFTKAQVIALDQEQYQKWL--------DRLDKLRDFFVSKISRLASQLKSEKDSMTAV 500 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID- 607 + + + + + ++ + + + N + Sbjct: 501 KLFFDFLVKNGVSARLEAWRLKASESGDLQQAQQPEQCWNLLLSLLKDYLLVNPENFAWA 560 Query: 608 ----IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL--------NEGVWP 655 ++T + + + + + + G N+ Sbjct: 561 DFFKMLTAAFSQANFATIPASLDAVTLSEYGMVQTSGYKQVFIIGAANGSLPQINDQPNF 620 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF---EMANGTRHLIYTRSL-RENNIPTI 711 T L+ + L+ +++ +A + + + + NN Sbjct: 621 LTTENLASLADFFDQEAYLEDSQQLRNLDQEYQFGNALALASDRVYISYPVINSNNDLLD 680 Query: 712 ASRWLQRLLVLGGTD-------FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------ 758 S + +RLL L K R + L Y Sbjct: 681 PSIYYKRLLKLVNGREYRQRDLPDTAEKDRTEFARQLLLFLTSPRASLGYLTYAEENSAQ 740 Query: 759 -------------------------------PFPPLEAQPRTY-------SFSEIKQLIN 780 P E S S+++ Sbjct: 741 SPLVAKLVELSRQYEEEKAEEIAEGMAYDNNPQDISEDLAERLYGKDLLSSVSQLESYYQ 800 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP----------- 829 + + + L+L + + + G FH L+K+ KN Sbjct: 801 NSFEYFLNYGLRLRPR--AENELNAIQSGNYFHRTFELLLKEMQKKNIEIDKLSELDLEL 858 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK----ISHSFLEHEEK---IQSSIEKIF 882 + + +I+ ++ L + F K ++ S+ +++ + E F Sbjct: 859 LLKQVRSEILREPLYQQFLRDPFNEYLFKAFDKTTSKVAQSYRRKQQENKMRATYGELAF 918 Query: 883 --VNIPAKMAIES------IGIHLTGFADRIDL-LKSGFVD--ITDYKTG-DNPKKETAQ 930 A + + I L G DR+DL V + DYK+ + Sbjct: 919 GPAEKLAGLVLPLKKFAGQRKISLRGKIDRVDLFNGDQHVLGQLIDYKSSDHSFNLARFA 978 Query: 931 KLIDPQLSLEAAALKAG--SFSQIDCRKVANLFY 962 +D Q+ L+ + + FY Sbjct: 979 SGVDLQMIAYLDVLEKNQDLLAGGRQFDLLGAFY 1012 >gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] Length = 1147 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 92/843 (10%), Positives = 204/843 (24%), Gaps = 68/843 (8%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + PL + A A+ L + I E + L AL + Sbjct: 321 LDEQARLIPLFDALRAARALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIH---KTL 377 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ + + A G+ T Sbjct: 378 DLLSRVGASWVLYKLDRGVDHVLV--DEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTR 435 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V + G D + S + A + Sbjct: 436 F-AVGDPKQSIYSFQGADPREFELTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVD 494 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 V + G + S + I E ++ A ++A Sbjct: 495 AVFGVPDHFAGLSFDAGAPGTVHASARAGVPGAVELWGIEEPAEAEEPDAWA--APVDAP 552 Query: 366 NEREEAISIAIALRMSLDEN-------------KKKSALITADRNLARRVKLELTRFGIN 412 AI +A + ++ L+ V + G+ Sbjct: 553 EPNAPAIVVARRIARAVKTWTTKGDACGRIWRPGDVLILVRKRSAAFEEVIRAMKGLGVP 612 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 + + ++ + L ++ A D + +AT +K PL + A+ Sbjct: 613 VAGQDRLEVAGHIAVLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFA 672 Query: 473 LVALRGNKNSYDIMDLKS----LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 D + L + + L + L+ Sbjct: 673 ETLEDALTRHAQAGDGAAIRGLTALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGG 732 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + + + + G ++ Sbjct: 733 EAGDAIDVFLAQAADAEN-----------GGDAPCLDAFLADYIVRPGRGRSGLSVKRDL 781 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ ++ L + T + L Sbjct: 782 ESGRNEVRVMTVHGAKGLEAPVVVVIDGCEPLGRNDPPLLGLDSTADGPLPP-------- 833 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 VW ++ + +S L + E++ M HL+ Sbjct: 834 ----VWTGGRTQDCAATLAARSALQARAREEHNRL--LYVAMTRAADHLVIAPYRGATRE 887 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL-EAQP 767 + + R+ + G + ++ W + P P Sbjct: 888 TPASWCEMVRIGLERGLGDGEAVETDHGPITIWRDGSAASLAAAAADTAPPEPETVPDWL 947 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + E + + D + RG L H+++ L + + Sbjct: 948 FSAAAPEAEAAPPLSPSGALGAADGQRQPRRRLGDAEARRRGALVHSLLEHLPRIEPARR 1007 Query: 828 TPEINHLMKQ---IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + + ++ K+ + + +I + E Sbjct: 1008 AEAADRFARARAPTLEEAKRKDLVRAVLRLIEAPDLAPLFSDQARAEVA----------- 1056 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-AQKLIDPQLSLEAAA 943 + ++ +E I +TG DR+ +++ G V + D+KTG P + + Q+SL A Sbjct: 1057 LSGRIVVEGIERDVTGRIDRL-VVEDGRVILCDFKTGRPPADDAPLPEREAAQVSLYARL 1115 Query: 944 LKA 946 A Sbjct: 1116 AAA 1118 >gi|238764004|ref|ZP_04624960.1| Exodeoxyribonuclease V gamma chain [Yersinia kristensenii ATCC 33638] gi|238697821|gb|EEP90582.1| Exodeoxyribonuclease V gamma chain [Yersinia kristensenii ATCC 33638] Length = 1128 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 89/771 (11%), Positives = 191/771 (24%), Gaps = 92/771 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L S +L L+ +L + + Sbjct: 62 ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----ELLENPVFSAMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE + N W L + Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + +R E + + I G + P + + + Sbjct: 172 LTRYTRQLAQPEW-HRANLYQRFIRTLLESDVCPAGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------- 289 H + ++ + I + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYREPAESGTMDVKLFRHPEQADQ 290 Query: 290 ----THPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKS 330 Q LL D L N ++G + + Sbjct: 291 LFNDDGEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGVQHDMLEL 350 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NK 386 T ++ ++ ++L + + E + L L++ Sbjct: 351 EDHAIIGVTPETLAHSHQKRVLELSDRSLSLHVCHSPQREVEVLQDNLLKLLEDSPDLTP 410 Query: 387 KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 + ++ AD + + IS +LL+ Sbjct: 411 RDIIVMVADIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRF 470 Query: 442 DFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLV 492 + L++ P F E L R + + +R + ++ +L + Sbjct: 471 TSEQVLALLEVPALANKFGINEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWH 530 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSIS 551 + + L + + L+ + + ++S Sbjct: 531 FGITRMLLGYAMDSSAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRALS 590 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 +W L L ++ L E + + S I D + Sbjct: 591 EWLPLCRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELAS 648 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 +D E + + + + R + F + L G+N+GV+P+ F +M Sbjct: 649 RLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQ 705 Query: 672 LNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + + E + L + R +N S + L Sbjct: 706 VRRGDRSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 756 >gi|284008543|emb|CBA75084.1| exodeoxyribonuclease V gamma subunit [Arsenophonus nasoniae] Length = 1057 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 82/733 (11%), Positives = 181/733 (24%), Gaps = 78/733 (10%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V + Q L+ E + G + I L +L S Sbjct: 35 ILVQSPGMSQWLQIELAQSLGIAANIS---FPLPATFIWDMFTRVLPDIPKESAFSKGAM 91 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166 +L ++ L + L+ + L+ +AD+ D +W Sbjct: 92 TWKLMTILPS----LLHESEFEPLRQYLNEDMGKRKLYQLSGRIADLFDQYLVYRPQWLE 147 Query: 167 ----EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L W L ++ + QI + H+ Sbjct: 148 NWHKKQLIE-GLSDNQQWQKRLWLALIEYTEKLNQPKWHRANLYQQFIQILQV-NLPSHI 205 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI----------WN 272 + I G P + ++ + H + ++ + I Sbjct: 206 RLP--KRVFICGIAALPPVYLQALNALGQHIDIHLMFTNPCRYYWGDIQSYAFLAKLERR 263 Query: 273 TITEKSTNITSSNTTYSTHP---------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + + + P Q+ LL D + + Sbjct: 264 KLKDFRDQHEITRFKRESSPDTLFNQQGEQFLTNPLLASWGKLGRDNLYFLSQLEQSNEI 323 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIP---------------NIQKCFSDVALIEADNER 368 + + + LE+ + K + + + Sbjct: 324 AAFVDLPCNCLLHQVQSDILDLEDHAQLGLTEASYNNSFLKRQLSKQDKSLTFHSCHSPQ 383 Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419 E + L +EN K ++ AD + + + + IS Sbjct: 384 REVEVLQDYLLRLFEENPTLTPKDIIVMVADIDCYAPYIQAVFSHVSAKRQLPFSISDRK 443 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALR 477 SLL+ + L++ P F + L + + +R Sbjct: 444 ARQVHPILQAFISLLDLPQSRFTTEQVLALLEVPALARRFSIYDDELLLLRRWINESGIR 503 Query: 478 GNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 N +I L+ + H + L + Sbjct: 504 WGLNDENIAMLELPVTGQNTWAFGLNRMLLGYAMDSHIGPWNKILPYDECTGLSAQLAGQ 563 Query: 531 IT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + + + ++ +S+W + L+ + + F + Sbjct: 564 LATFIDSLTSWRSILDQERKLSEWLPVCQCLLEAFFETDEQIESIFIF--ILQQWQKTIE 621 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 I D + D E + + + + + R + F + L G+ Sbjct: 622 TGIVAKYEDSVPLSLIRDELVTCFDDEKISQRFLAGA-INFCTLMPMRSIPFKVVCLLGM 680 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTR--SLREN 706 N+ ++P++ F +M ++ E N L + + Sbjct: 681 NDRIYPRSIPPLGF--DLMAEQPQRGDRKRRDDDRYLFLEALNSASQLFYLSYIGHAMRD 738 Query: 707 NIPTIASRWLQRL 719 N P S + L Sbjct: 739 NQPHNPSVLVNEL 751 >gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1162 Score = 107 bits (267), Expect = 1e-20, Method: Composition-based stats. Identities = 73/666 (10%), Positives = 169/666 (25%), Gaps = 54/666 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII----KSLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 21 GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDAIDPDRPPGEPRISTYHAFA 80 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L P P + L Sbjct: 81 GQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAA--------PGPYPALTRSFSTLVG 132 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195 +L + + + E L A E A L+ + Sbjct: 133 DLLALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRLPEAAAARRELRGLVLRY 192 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 AL R L++ +++ + A L+S + Sbjct: 193 RAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDEYRVVLLDEYQDTSVAQRLLLSGLF 252 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 G V D W + + + + Y + L Sbjct: 253 GQGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYRDGTPAARYSL----------- 301 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 S ++ + + + + + V + EE Sbjct: 302 ------SENRRSGGRLLQLANGLAAPLRAMHEGVEALRPAPGAERDGSVRVALLPTHAEE 355 Query: 371 AISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSS 428 +A ++ + +K A++ ++ L I +++ L + Sbjct: 356 IDWLADSIARLVRADKAPGEIAVLCRTATDFPEIQAALVARDIPVEVVGLSGLLHLPEVA 415 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L ++ + ++ L+ P + G + L + L + G+ + + + Sbjct: 416 DLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAER 475 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + ++ + + + + + + + L + + Sbjct: 476 LAAAVEGTDPAEVISLADGFDAFIDPAGADDGLPFSGEARVRFAHLARELRELRRSLADP 535 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ T +V L + E + + A Sbjct: 536 LMDVLHRVLSTTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLR 595 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + +T+ +L +S+ L +D + + GL G +P + A+ + + Sbjct: 596 TAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQ 655 Query: 669 QSDLNL 674 L Sbjct: 656 VLPHAL 661 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 73/267 (27%), Gaps = 37/267 (13%) Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G + + W R L ++ R P + S++ +L DP Sbjct: 907 GPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVH--EVPLPPALTASQLMRLAADP 964 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 AR + + P RGT FH + ++ Sbjct: 965 DGF-ARELARPMPRPPQ----PAARRGTRFHAWVESRFEELPLPLLGPDEL--------P 1011 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + P DI + +F + V P ++ + + G Sbjct: 1012 GGDLDGPDLADIADEEDLAALKEAFERTPYARR---TPHRVESPFQITLAGR--VVRGRI 1066 Query: 903 DRIDLL--KSG------FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 D + G +I D+KTG QL++ A +D Sbjct: 1067 DAVYRTTAADGPATSPARYEIVDWKTGAA------AAADPLQLAVYRLAWAEQ--HGLDP 1118 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKY 981 +V + ++ ++ + + + Sbjct: 1119 EEV-DAAFVFVRSGEVVRPQSLPGRAE 1144 >gi|123443512|ref|YP_001007485.1| exonuclease V subunit gamma [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090473|emb|CAL13341.1| exodeoxyribonuclease V gamma chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1123 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 90/766 (11%), Positives = 193/766 (25%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L + +L S +L L+ L + + Sbjct: 62 ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLENPVFSAMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE + N W L + Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + +R E + T + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRTLLESDVCPTGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290 H + ++ + I + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESVEVKLFRDPEQAEQLFNAD 290 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPD 335 Q LL D L + +E+ + + Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAI 350 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSAL 391 T ++ + +++ + + E + L L+ + + + Sbjct: 351 IGTTPETLAHSHQKRVLDLRDRSLSMHVCHSPQREVEVLQDNLLRLLEADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + IS SLL+ + Sbjct: 411 MVADIDSYTPYIQATFGNATGDRYLPFAISDRKASQAHPALQAFISLLDLPQSRFTSEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P+ F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPVLANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + + L + + L+ + + S+S+W L Sbjct: 531 MLLGYAMDSNAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLSESRSLSEWLPL 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + S I D + +D E Sbjct: 591 CRQLLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205] gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205] Length = 1162 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 101/1006 (10%), Positives = 215/1006 (21%), Gaps = 154/1006 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEIT---------------GKKSTILPIIKSLGDVVEEKFT 90 V T++A EL + P I + T Sbjct: 83 QVLGLTFTRKAAGELAHRVRARLSQLVRRLGRRGRDPQDESLAGEPTIATYHSYAGRVVT 142 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L + RLL A + + E + LA Sbjct: 143 EHGLRAG-----YEPATRLLTEASRWQ-LVDLIVRNYDGDMSEVDRMPSTITDAVLALAG 196 Query: 151 NLADIIDI----IETEEKKWEDLH------ALKNEKYGMWWLLAADFLKIASKYWTERLV 200 L + + + + D+ + + L + + + R Sbjct: 197 ELDEHLVEPDHLAGWTGRFFADVQSRPGRVYADVRRALTLQQIRLKLLPLV-RAYARRKR 255 Query: 201 ELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + A R +H + + +++ + A L++ + G Sbjct: 256 DFEAMDFADQLARAARVARDHPVVGEIERDRYRVVLLDEYQDTSHAQVVLLNALFG--GG 313 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 V D W + + + + + + L + E + Sbjct: 314 HPVTAVGDPCQSIYGWRGASAGTLDRFPTEFARADGVPAQVRTLTTSWRNRPEVLGVANA 373 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 ++ + + + + V D +EA IA Sbjct: 374 LATPLRAAGARVPELHAALSVKEPIPHRTPRGS------AAGTVHCALLDTYADEAEWIA 427 Query: 376 IALRMSLD---------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 +L + + +A++ R+ ++ L G+ +D+ Sbjct: 428 DSLLRAWQGAAGAPGAVPEHLPVAARPTTAVLVRLRSQIPAIESALRARGLPVDVVGLGG 487 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L T + L + D A+ L+ + G + + A R Sbjct: 488 LLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIAAARRKLT 547 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + + + AT S E + L + Sbjct: 548 AGDEPEIVPDALD--EATLVEALADLGPAPAYSAEGYARFRAAAQELGLLRYRLDQSLPD 605 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + D + + S ET + Sbjct: 606 LIADVERTIGLDVEVAVRAGRDGAGDAGLARGHLDALGDVAARFSG------ETPGATLS 659 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + ++ G + +L ++ L +D + + GL+ GVWP Sbjct: 660 AFLAYLAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLEWDVVAVAGLSRGVWPGPVRN 719 Query: 661 NPFL------------------------SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + Q + A+ AHD + Sbjct: 720 SDHWLGGLGVLPFPLRGDADGLPVLELAEAGEQRGVAQALADFTAAWRAHDEREERRLAY 779 Query: 697 LIYTRSLR-----------ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + TR R S L+ + + Sbjct: 780 VAVTRPRRLLLCSGYWWGEGTKRARGPSALLRDVHGACLDAGAGLVVDEWAAEPAPDAVN 839 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY---------------------- 783 T + P + + +++ + D Sbjct: 840 PTTEVVLRAEWPADPLGDRRPALAEAATLVRRFLTDGDPTTRAATGAVATAAPGDDDAED 899 Query: 784 ------AVYARRILKLDFIPHFKK---------------------DPDRTDRGTLFHNII 816 L L + D + Sbjct: 900 DDPEVVRWRREADLLLAERAELTRHAGPVEVALPAALSVTQLVALRRDPAALARSLRRPL 959 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + T L ++ + P ++ + Sbjct: 960 PTEPNPYARRGTAFHAWLEQRFGAGRLLDVDELPGAADADAAPDEALAELQERFLHSEWA 1019 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + +P I G+ + G D + G D+ D+KTG Sbjct: 1020 DRTPVEAEVPFATVIA--GVVVRGRMDAVFGRPGGRFDVVDWKTGR 1063 >gi|190151240|ref|YP_001969765.1| exodeoxyribonuclease V subunit gamma [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264591|ref|ZP_07546173.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916371|gb|ACE62623.1| Exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870054|gb|EFN01816.1| Exodeoxyribonuclease V, gamma subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1114 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 85/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ + + + + + Sbjct: 234 RIFVFGISSLPATQLAVLKKLSENCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 +++ L Sbjct: 762 NFSEAL 767 >gi|158321322|ref|YP_001513829.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii OhILAs] gi|251764576|sp|A8MJ51|ADDB_ALKOO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|158141521|gb|ABW19833.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii OhILAs] Length = 1144 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 78/253 (30%), Gaps = 36/253 (14%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---N 827 S S +++ N P++ + L+ + D G LFH+ + K+ +N+ Sbjct: 774 SVSRLERFANCPFSHFVTYGLRPKERK--EYQLSNPDIGRLFHDSMENFTKELVNEQIQW 831 Query: 828 TPEINHLMKQIIDSHFEKENL--------PPHIDIIWRHLFHKISHS--FLEHEEKIQSS 877 ++ ++ H +IS + E + Sbjct: 832 KDLTREQSDYFVEKVIDEMVPEFEHGIMLSTHRYQYLVTRLKRISKRAMWTLTEHIKKGQ 891 Query: 878 IEKIFVNIPAKMAIESIGIH----------LTGFADRIDL--LKSGFVD-ITDYKTGDNP 924 + I + + I L G DR+D+ + G I DYK+G Sbjct: 892 FVPMGHEIIFGLEGDIPPIVIELESGEKIYLEGRIDRVDILNDEDGNYVKIIDYKSGSKE 951 Query: 925 -KKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKIDCITNDKKKYS 982 QL + A+ + + +FY FKID + + Sbjct: 952 FSLSDVYYGFQIQLLVYLDAVLSSQSQKYQAEVHPGGIFY------FKIDDPMVKTTEKA 1005 Query: 983 ADELSEKSLKNLI 995 E+ ++ K L Sbjct: 1006 VKEVEKEINKRLK 1018 >gi|114326567|ref|YP_743726.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114326628|ref|YP_743786.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114309506|gb|ABI60748.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114309567|gb|ABI60808.1| UvrD/REP helicase [Nitrosomonas eutropha C91] Length = 971 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 117/1050 (11%), Positives = 258/1050 (24%), Gaps = 136/1050 (12%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 + P + P S ++ + + + P L + T +A +EL Sbjct: 21 LATDGPVLIIAGPGSGKTFTLVE-----RIAYLITQEGVAPESL---FVVTFTDKAAREL 72 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + +L ++ F + L + ++R L + Sbjct: 73 TTRISNRLTNLGIK----FNLNEMYLGTFHSICLRLLEDFREFTWLKRSFTLFDQFDQ-Q 127 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWL--AKNLADIIDIIETEEKKWEDLHALKNEKYG 178 L IKD L + ++NL ++ + E L A + Sbjct: 128 YFLYQHIKDFRELPDAQLVMGDDQTGRWMQSENLLKWVNKVREEALDATTLTAAPELEIC 187 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233 L + E L E N+ G Q +R + + +++ Sbjct: 188 A--------LATCFAKYQELLHEHNSLDFSGIQYEALRLLEKRPEVLAQLRERLTHLMVD 239 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 + R++ +A V+ D + T ++ S T Q Sbjct: 240 EYQDTNTIQERILLLLAGENKNLCVV--GDDDQGLYRFRGATIRNILEFPSLFTDDQCKQ 297 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L G + + P + ++P Sbjct: 298 VKLTVNYRSHPDIIRFYNEWMKEQVWDDGTRVFRFAKQIVPC-------EDDFPEMPTAV 350 Query: 354 KCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLE-LTRFG 410 + + E N E ++ L+ L + + + L + +N L G Sbjct: 351 RLAASNDNGETTNWHAEVLAFLNGLKASGKLADWNQVAFLFRSVKNDKVVALARFLEAQG 410 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + ++ I L+ L + + Sbjct: 411 VPVFSPRSNMFFEREEIRLM---------------IGALIF--LFPQFPKVRAWAEGVTL 453 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 +L+ + + +L + Sbjct: 454 PIWDYYDHQCFKPFTDELRK-------------PENKPLLDWARPLAKRHAVLAQNTDYA 500 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + L L+ + + L + E S+ + Sbjct: 501 FSGLFYQLFQFPLFSHFLT----EEAAQGVDKGRAARNLGTFSKLLTKFEYLHFVSVLNP 556 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + I + + + L +S+ L F ++ G L Sbjct: 557 SFLEKNIRDLFNQFLRFLQDGGIGEYEDEAEYAPKGCISFLTIHQSKGLEFPVVVCGSLE 616 Query: 651 EGVWPKNTAKNPFL---SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + +A + L + + K + + ++L+ + + Sbjct: 617 AVPRKQYSALDVLLEDGGYLSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQG 676 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 S++ +RL R T + + + Sbjct: 677 RGKSPSKYFERLFYEL-------PSWRDVDLSALT--------------YEAVKQINLKR 715 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK-RINK 826 S I N + L+ I GTL H I ++ K + Sbjct: 716 EYSFTSHIAVFENCAEQYRFFKELEFAPIRE-----SPMLFGTLVHQTIEDIHKTVLRGE 770 Query: 827 NTPEINHLMK-------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 +K ++ P H+ + E E + I+ Sbjct: 771 EGSITLDGIKGWFSANYAMLSKKERVYLAPSSQQAALLHVL-----RYFERENGNWNRIK 825 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK---KETAQKLIDPQ 936 ++++ L G D I + V+I D+K+ P + Q Sbjct: 826 ----EAEVEISLVKDQYILKGSVDLI-RGEHDTVEIIDFKSEKKPDMERDRDRLRQYQSQ 880 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L + A ++ + ++ L+Y + D D K++ + Sbjct: 881 LEVYAHLVEKRTGQKVSRMH---LYYTGEDGGTPYVSFSKD------DRAIGKTIARFDD 931 Query: 997 IVTLLQNGEQPFISHLR---LSEKSNIQSE 1023 IV ++ + + LS + Sbjct: 932 IVARIERQDYGIATRPAKLCLSCDMRAYCD 961 >gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] Length = 1221 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 68/653 (10%), Positives = 145/653 (22%), Gaps = 58/653 (8%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV---------EEKFTADLLLS 96 V T +A EL + P F LL Sbjct: 156 QVLGLTFTNKAAAELADRVRRSLVRAGFSDPGAPPAPGAELPGEPLISTYHSFAGRLLDD 215 Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 + L + RLL A + L + P P L +L + Sbjct: 216 HGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGFSDLVSDLLALD 267 Query: 157 DIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWTERLVE 201 + L E A L + + Sbjct: 268 GELSEHLVDPAALSRYDEELLRTLAGARLSNDQLRKVPEAAAARLALTELTGRYRAAKRA 327 Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + R EH + +++ + A L++ + G Sbjct: 328 RDLIDFGDQLALSARLAREHPEVGETLRAQYRVVLLDEYQDTSVAQRVLLAALFGGGTGH 387 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D W + + + + + L Sbjct: 388 PVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL----------------- 430 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 S +++ + + + P + V EE +A Sbjct: 431 SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLPTHAEEIDWLAD 490 Query: 377 ALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + + A++ R++ L I +++ L + L ++ Sbjct: 491 RVAHYVRTGTDPGEIAVLCRTAGDFSRIQAALVAREIPVEVVGLSGLLHLPEIADLRAVC 550 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + ++ L+ P + G + L +A L + V Sbjct: 551 EVLQDPGANASLVRLLTGPRWRIGARDLALL--GRRARFLAGGRTGEDDPARRLAAAVEG 608 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + D E + L + + Sbjct: 609 IDPAEIVSLADAVDTFVEGGPDAEDGLPFSTGARTRFARLGRELRELRRALADPLMDVLH 668 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 ++ +V L E + A + Sbjct: 669 RVLAATGLDVELSASPNALAARRRETLGQFLDTAASFAANEPAASLLAFLGYLRTAEQYE 728 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 +T+ +L +++ L +D + + GL + +P + + F +R Sbjct: 729 KGLDNALPGGENTVKVLTAHKAKGLEWDIVAVPGLVKAQFPSDRGRERFTARA 781 Score = 62.2 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 60/628 (9%), Positives = 150/628 (23%), Gaps = 46/628 (7%) Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 R++ A I + + + S G L L A+ Sbjct: 601 RLAAAVEGIDPAEIVSLADAVDTFVEGGPDAEDGLPFSTGARTRFARLGRELRELRRALA 660 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + L L A+ L S+ + + +L + Sbjct: 661 DPLMDVLHRVLAATGLDVELSASPNALAARRRETLGQFLDTAASFAANEPAASLLAFLGY 720 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT--PLVTYKTNKNSTCGNLSISDWTKL 556 + + +L H + + + K + +T Sbjct: 721 LRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDIVAVPGLVKAQFPSDRGRERFTAR 780 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + D + +G + ++ ++ + + + L+ Sbjct: 781 ASVLPHPLRGDAATLPEVPAWTAKGLKAFQDDMREHQSTEELRLGYVTFTRPRSLLLGSG 840 Query: 617 TVKPK---IEKSSTLFILGTLESRLL---NFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + + F+ + + E P +P + Sbjct: 841 HWWGPEQKRPRGPSAFLTALHDHCARGHGEIEHWAEPPGPEDENPALRDTDPLPWPLPLD 900 Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR------LLVLGG 724 + H + E+ + Sbjct: 901 PAAHARRRAAAARVEHHLALLQHPADPPRPDEPPEDPYEDGPDPDPYEEAPPAPRVPAPA 960 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 D + + W R LD + +R P + + +++ +L DP Sbjct: 961 PHGEDLTSEESRLLGSWDRDLDALEGE--LRRAAASVREVPLPPSLTATQVLRLAEDPDG 1018 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + + P + RG FH + + + + Sbjct: 1019 -----LARDLARPLPQAPKPAARRGARFHAWLERRLTAGHEQPRLPLPDE---------G 1064 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + +I ++ +F + + V +P ++++ + G D Sbjct: 1065 EPEPREDAEISDDLDLEELKEAFERTPYAHRPAHR---VEVPFQLSLAGR--VVRGRIDA 1119 Query: 905 I---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 + D +I D+KTG + QL++ A I ++A Sbjct: 1120 VYAHDEDGRRRYEIVDWKTGR-----DRARADPLQLAVYRLAWAE--RHGIAPEEIA-AA 1171 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEK 989 ++ ++ + + +E+ Sbjct: 1172 FVFVRTGETVRPTRLPGRAELERLFAEE 1199 >gi|254361418|ref|ZP_04977559.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] gi|261495601|ref|ZP_05992047.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092924|gb|EDN73955.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] gi|261308708|gb|EEY09965.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1096 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 98/967 (10%), Positives = 235/967 (24%), Gaps = 131/967 (13%) Query: 21 MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80 + L+ V DP P TI + ++ Q L+ + E+ G Sbjct: 13 LAEMLVKIQQVNPLE-DPFEPE-----TILIQSQGMAQWLQMQIAELNG----------V 56 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 +G+ T L Y L P + + E + L+ LP + Sbjct: 57 MGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSCLTLSEFAPLKRYLG 116 Query: 141 S-------PANAIWLAKNLADIIDIIETEE----KKWE---------------------- 167 L+ +A++ D WE Sbjct: 117 DQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQAIENEIKIATAAKPIDF 176 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 DL + W L+ S + + + A + E Sbjct: 177 DLIRADMKWQSHLWQQIVSDLQSESD--EQVFTTSHRAYLQQNYFAKLDDLTETEKAKLP 234 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP-----TAIWNTITEKSTNIT 282 I I G + P + ++ H + + +W + ++ Sbjct: 235 KRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGDSVEEKVWQKL--ALSHKI 292 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 S + + + L + R+ + +L + ++ + Sbjct: 293 SQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVFVEPEENSNLNKLKKQIFS 352 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + I ++ + + + + E + L +++ K +++ D N Sbjct: 353 LENDATITDLT-ADNSLQIHSCHSPMREVEVLHNQLLNLFEQDSTLLPKDIIVMSPDINK 411 Query: 399 ARRVKLEL---------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + I +S LL + + L Sbjct: 412 YAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIHSFLQLLAMKESPFNAEELFDL 471 Query: 450 VK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ F + + R V + S ++ Sbjct: 472 LEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQPHWQNYNSWENGLNRLLLGSSLK 531 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + L ++ + + N ++ W + Sbjct: 532 EEQGIWENTLAFGDSYGLNAELVGRLASFIEALLAWVNFLQTPQPLAAWQQAIKNL---- 587 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 N L+++ +IIE S + I+++ L + + + + Sbjct: 588 --TADLYQENAENAASILLLNNVNDQIIEQISATHFSDDLQIEVLALLFEQQLSQHSQQL 645 Query: 625 S---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L R + F + L G+NE +P+ N F + Sbjct: 646 NFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQQINSFDLMQYAPKKGDRAKRDDD 705 Query: 682 GQAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 E + + + +++ + S + +LL K Q Sbjct: 706 RY--LFLEALLSAQQMFYISYIGQSQKDGKEMLPSILVSQLLDAMNEALTPECK---QQL 760 Query: 739 LDWTRKLDYTT-------------------------KQPHYKRPKPFPPLEAQPRTYSFS 773 D L + P + Sbjct: 761 SDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPTVAVQDFLSEPLTNESVASLELD 820 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ + +P + ++L + + D ++ + ++ + + N + Sbjct: 821 ELISFVQNPIRFFFLKVLGIS-FNTYDDTIDESEIFEMSGLDNYRILNELLTINLAQQQR 879 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + I +L E +I S ++ + Sbjct: 880 FF---AEEQLKGNLPASYFAQIATQDLIGKITEMQAALSHYLASESRILSVNREVELE-R 935 Query: 887 AKMAIES 893 + + Sbjct: 936 QTLTLNG 942 >gi|298345280|ref|YP_003717967.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] gi|298235341|gb|ADI66473.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] Length = 1164 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 117/1046 (11%), Positives = 263/1046 (25%), Gaps = 120/1046 (11%) Query: 45 ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + P A + L + +L S G V E + P Sbjct: 71 PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V RL A +++ ++ L + + + ++L D I + Sbjct: 129 EV----RLATDAEVMVQIQDFLAGMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177 Query: 162 E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + + + + + + L+ +S + ++A A Sbjct: 178 FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I ++S A +G ++ + + + Sbjct: 238 -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 ++ L + L R V S ++ Sbjct: 291 ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394 + E + L+E + + I L+ + + + A++T Sbjct: 346 SSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405 Query: 395 DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447 AR+V L I + + L+ + L ++ A+ + +A Sbjct: 406 SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465 Query: 448 TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 L+ L + Y R + + G+ D D I Sbjct: 466 GLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVG 525 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 N ++ + ++ + + V I+ I + +V Sbjct: 526 NLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612 L D + L L ++ + + + D Sbjct: 586 LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645 Query: 613 ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + TV P + ++ + ++ + + GL +G WP Sbjct: 646 FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSI 705 Query: 664 LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 L M + T G H F + + ++ + Sbjct: 706 LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756 + L + ++ + R +D T + Sbjct: 766 TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825 Query: 757 -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 P P S S +++ + +P + Sbjct: 826 CPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882 Query: 804 DRTDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 G + H + + + + P + Sbjct: 883 AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGETWVESN 942 Query: 860 FHKISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVD 914 F + + L + + + +E+ + DR+ + G V Sbjct: 943 FRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHGRVI 1001 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 I DYKTG+ A+ + QL+L AA A Q +A + +++ K Sbjct: 1002 IMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKKLYA 1061 Query: 975 T-NDKKKYSADELSEKSLKNLIEIVT 999 T ++ ++SL++ E++ Sbjct: 1062 THGIEEPREPKVWVQQSLESGTEVIA 1087 >gi|215405209|ref|ZP_03417390.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987] gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289687544|gb|EFD55032.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] Length = 522 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 114/476 (23%), Gaps = 46/476 (9%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGK-- 70 P + ++ A + +P V + + R RS + Sbjct: 27 PGTGKSTLLVEAAVAHIG------AGTDPES---VLLLTGSGRMGMRARSALTTALLRSR 77 Query: 71 ------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLP 124 + P+++++ + + P RLL A I R L Sbjct: 78 TNGPCRAAIREPVVRTVHSYAYAVLRKAAQRAGDALP------RLLTSAEQDAIIRELLA 131 Query: 125 DIIKDLYP--ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL 182 +D + + A L +++ +L L + W+ Sbjct: 132 GDAEDGPAATTTWPAHLRPALTTAGFATELRNLLARCAERGLDPLELQQLGRRRGRPEWI 191 Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A F + + V + A + G+ A Sbjct: 192 AAGQFAQRYEQ--------------VMLLRGAVGLAAPQATAPALSAAELVGAALEAFAV 237 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA--KLL 300 + +++ P A + + + + Sbjct: 238 DPELLAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELALIAGDPNQAVFGFRGGEPT 297 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT-DILENKIPNIQKCFSDV 359 L S + R + +I V Sbjct: 298 GLLADDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSV 357 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKS---ALITADRNLARRVKLELTRFGINIDIS 416 + A + EA IA ALR + + A+I A R+ L G+ + Sbjct: 358 TVRLAGSAHAEAAMIADALRRAHLIDGVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPP 417 Query: 417 A-GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 A G PLS L ++L A D L+ P+ R Sbjct: 418 AVGGPLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQR 473 >gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1201 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 66/673 (9%), Positives = 166/673 (24%), Gaps = 64/673 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------ 85 + V T +A EL + + P + Sbjct: 67 GTGQVAPEQVLGLTFTNKAAGELAERVRKALTEAGVTEPEPLAPPGAGPQDEHTPGEPVI 126 Query: 86 --EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 F LL + L + RLL A + L + P + P Sbjct: 127 STYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREA--------PGAHPALTR 178 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFL 188 + L +L + + + L + A L Sbjct: 179 SFPDLVGDLLALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDL 238 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243 + + + + H L++ +++ + A Sbjct: 239 AGLVEQYRSAKRDRDLIDFGDQIALSATLADRHPAVGALLREEFRVVLLDEYQDTSVAQR 298 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L++ + H G V D W + + + + ++ + L Sbjct: 299 ILLAGLFGHGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFPHADGTPAARHSL---- 354 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 S ++ + +T + + + V Sbjct: 355 -------------SENRRSGGRLLDLANTMAAPLRAMHTGVEALRPAPGAERDGIVRCAL 401 Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 D +E +A + + + A++ ++ L + +++ L Sbjct: 402 LDTHADELTWLADRIAHLVATGTPPGEIAVLCRTAGDFGAIQSALVDRDVPVEVVGLSGL 461 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L ++ + ++ L+ P + G + L + L + R + Sbjct: 462 LHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGD 521 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D +++ A + + + + + L T + Sbjct: 522 DPDRRLAEAVEGVDPAEVIS---LADALDTFLDGSADDELPFSAEARVRYAQLATELRDL 578 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + + + ++ T V L + E + + Sbjct: 579 RRSLADPLMDVLHRVLATTGLEVELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLL 638 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 A + +T+ +L +S+ L +D + + GL +P + Sbjct: 639 AFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGRE 698 Query: 662 PFLSRVMQSDLNL 674 + ++ +L Sbjct: 699 KWTAQPRVLPHSL 711 Score = 59.6 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 92/823 (11%), Positives = 188/823 (22%), Gaps = 65/823 (7%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L+ A + AL+ A+ L + + A L Sbjct: 375 LRAMHTGVEALRPAPGAERDGIVRCALLDTHADELTWLADRIAHLVATGTPPGEIAVLCR 434 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-----F 302 T + L D + + + + A L+ Sbjct: 435 TAGDFGAIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPR 494 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKCFS 357 I D+ LG + + R + D E + + + Sbjct: 495 WRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVISLADALDTFLDGSA 554 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 D L + R +A LR + +++EL+ + Sbjct: 555 DDELPFSAEARVRYAQLATELRDLRRSLADPLMDVLHRVLATTGLEVELSSSPQALAARR 614 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN----ALEL 473 LS + + A K +A ++ + L +N Sbjct: 615 RETLSN---FLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAH 671 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + + + L + ++ T P D + + Sbjct: 672 KSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPDAGALDSKGLKA 731 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + T L + Sbjct: 732 FTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDFLLALHDHCLAGH 791 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL---NFDTLILGGLN 650 + + A + L + + + + + D L G L Sbjct: 792 GETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVRAHLDALASGALA 851 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + A + + E Q + +G T P Sbjct: 852 TSAIEEQAAPDAAVPAHPAPGEPDGPPEDLEPQPEDEESHEDGDWESWTTARPATTPPPV 911 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + + + L + D R + P + Sbjct: 912 AVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGELLRARQGTRDVVLPASL 971 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRINKNT 828 + SE+ +L DP A + P RGT FH + + + + Sbjct: 972 TASELMRLAADPAGFAAELARPMPRPPQP-----AARRGTRFHAWVESRFEDVQLPMLDP 1026 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 E+ I D H + +F + E + + V +P + Sbjct: 1027 EELPGHDADIADEH----------------DLEALKEAFEQTEYAHR---TPLGVEVPFQ 1067 Query: 889 MAIESIGIHLTGFADRIDLLKSGF----------VDITDYKTGDNPKKETAQKLIDPQLS 938 + + + G D + L+S +I D+KT + QL+ Sbjct: 1068 LTLAGR--TVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP------LQLA 1119 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + A ++ A YIR + + + ++ Sbjct: 1120 IYRLAWAEHHRLPLEAV-TAAFVYIRTGETVRPRHLPGRREIE 1161 >gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 1118 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 115/931 (12%), Positives = 240/931 (25%), Gaps = 126/931 (13%) Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPV--SNIQRLLELARLILIWRNKLPDIIKDL 130 ++P + + LL+ + + LA L+L + Sbjct: 245 LLMPTARFAASNLPCDHPIALLVDWETPLAQKQEVLPMWCALAELLLTASGEPRKEGGLN 304 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL---AADF 187 + A L + + + D + L L NE W + + Sbjct: 305 VKVGFPATDEGRAQKTALVEIIHAVEDPAALYRV--KSLPNLSNENAS--WQIITTLSKL 360 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK---------GPIIIAGSTGS 238 L +A V A ++H + T+ +++ + Sbjct: 361 LTLAVAELWLVFQRAGEVDFVEIAQRATHALSDHFGEPTELALKLDYQIQHLLVDEFQDT 420 Query: 239 IPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 P+ L+ + +G + D + + N + H + Sbjct: 421 SPSQVALIEQLTLGWQFDDGRTLFAVGDPMQSIYRFRKANVGLFIEAADNGIGNIHLER- 479 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 +L + + ++ +++ + ++ E + Sbjct: 480 -LQLYRNNRSCPAIISWINQTFAPIFPTHDEVTQGAIHYRPFIATKQELAEAGVVVHPLI 538 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI--NI 413 EA +RE I +K A++ + + +L R Sbjct: 539 KQADESYEAAAQREAEAVIRTIQEERNRYPGQKIAVLVRSKKHLSHLVSQLRREHQDIPF 598 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 L L SL++A+ D + +++ P + Y ++ Sbjct: 599 QAVEIEALEGRQIVQDLLSLMHALHHRADRVHWLAILRAPWCGLTLHDLYELAGRDHYRT 658 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 V +D E+ L D + Sbjct: 659 V------------------------------------WSLMQDSEIIQRLSDDGQARLLH 682 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 L T G + +S W + L LW + + + + F+ + Sbjct: 683 LRAVLTEAYVNQGRMGVSRWIRGVWLMLNG--------TDCLWDKADVVDVQAFFTCLDG 734 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + + IT+L + L ++ +S+ L FDT++L GL Sbjct: 735 LDRSNQFSPERMESEITKLFAA-----PDSQGEHLQMMTIHKSKGLEFDTVMLLGLGAPT 789 Query: 654 WPKNTAKNPFLSRVMQSDLN------------------------LKTAEKYIGQ---AAH 686 NT K L +++ + L++ EK A Sbjct: 790 GGNNTDKPLVLWEEVKTSYSHELLAAPYIPKGARDKDNVSPYDYLESREKARDANESARV 849 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + A ++ + N S L L + + Q + + D Sbjct: 850 LYVAATRVERKLHLFGIANQNAKGEISPTKNTYLDLLWNEVAPVFEADAQLAFEQPAQGD 909 Query: 747 YTTKQPHYKR-PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P R +P P+ Q + S YA+ +K + + Sbjct: 910 IADFTPQLIRLAQPAVPVLLQTGKAAPS------------YAKPNVKPSYHSSLE----- 952 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 D GTL H + + ++ + T ++ + ++ +I Sbjct: 953 ADAGTLAHRYMEMIAQQGVANWTATRVATLEAAMQHWLRQQGHTAAAANDAAVTVVRILQ 1012 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD-NP 924 L + + + + DR + + G I DYK+ P Sbjct: 1013 QTLNSADGQWVLQARHDAESELAITRTEQDKVKSYVVDRTFV-EDGVRWIIDYKSVRLAP 1071 Query: 925 KKETAQ-----KLIDPQLSLEAAALKAGSFS 950 + QL A Sbjct: 1072 DAAEYELNAATAPYRSQLENYAMLFAHEGLP 1102 >gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 1159 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 97/869 (11%), Positives = 209/869 (24%), Gaps = 122/869 (14%) Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKG--PIIIAGSTGSIPATARLMSTVANH-- 252 RL L+ + + L+R E L +++ P L+ + Sbjct: 318 ARLAALSFDDLLLGALRLLRQRPELLPALRGRFRALMVDEFQDVNPVQGALVGLLCGLGS 377 Query: 253 ----PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 P+ ++L D + N T ++ LA L Sbjct: 378 DDPGPDAPLLLIVGDRKQSIYAFRGADVSLYNQTMADF--EGGGPGVLAALRRNFRSDPR 435 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN-- 366 V+ + ++++ + + + + + L + Sbjct: 436 LVEFFNRLFDQVFAQGKNRQHAPHAYVDFRDDDRQRPGRAAGDFSGGPALELLHCGGDDQ 495 Query: 367 -----EREEAISIAIALRMSLD---ENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 EA ++A L + + A++ R + L R ++ G Sbjct: 496 NAEQRRAREATALAAHLAGLVAGGQVRPGQIAILLRKLTAVRVYEEALRRQDLDFCTVKG 555 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + + + A+ +D +A+ L++ PL Sbjct: 556 KGFFGCQEVADVVMAMRALLWPDDDLAVTALLRSPLV----------------------- 592 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 L L +A ++ L + + L Sbjct: 593 --------GLSDESLLAMAHHGPQLKPSQALAQGRALPDWLPTEQHERLSMARRLLADLG 644 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 I+ + L + L L E + Sbjct: 645 PRARRMTPAELITAVIEAGDYMQVLAGLPSGEQKAA--------NLRKLIETAREYDDGV 696 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +A + ++ + + + I+ +++ L F ++L L Sbjct: 697 EACLRRLMAMLAQDPGDAQAPLAGDDGQIVRIMTIHQAKGLQFPVVVLADLAGQAGGGPR 756 Query: 659 ------------------AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 A L + L+ + ++A F +A Sbjct: 757 ALVGPDQNGVISPRPIDFASGQRLETAIHQRLSQRATAIEEAESARLFYVACTRAQERLV 816 Query: 701 RSLRENNIPTIASRW---------------LQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + P +W L + YL Sbjct: 817 LCMSAGKRPGPWQKWADAFIAGDELASHVDLGVVGDAVADAPALGPAAAWPDYLPAEAGP 876 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF------ 799 + +R P L S S ++ P + + L LD Sbjct: 877 LAEEGRMLAQRCLIRPALGPAAVRASVSAVEDFWACPRRFFLTQRLGLDTALLPGMGGTG 936 Query: 800 -KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 G+L H ++ ++ + ++ + +S + Sbjct: 937 GDDPAQAARLGSLAHMLLQQV-------DLAAGAAGLELLTESLLAAGKADGGLLTQASL 989 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPA----KMAIESIGIHLTGFADRIDLLKSGFVD 914 + + L +F P G+ L G D + ++ G Sbjct: 990 MAGHFFQTDLAAALAQLPPCT-VFREQPFLLCLPGQGGGPGLELRGEFDLLAPMEDGRWL 1048 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 I DYK G Q+ + AAAL +G Q L + Sbjct: 1049 IVDYKVGRRLDPAK----YHGQMLIYAAALWSGGKDQ--AMAPPRAVLAHLGPERAALHY 1102 Query: 975 TNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 +++L++L + + + Sbjct: 1103 LEFTAAQ-----LDQALEDLRQAAGPMAD 1126 >gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110] Length = 1180 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 79/792 (9%), Positives = 176/792 (22%), Gaps = 77/792 (9%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 L S W ++ G+ Sbjct: 390 KTLAMLNRVSSGWVHYKLDRGVDH--VLIDEAQDTSPRQWDIVAHIISEFTAGEGAREGL 447 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 R + V + G A + K T + + + Sbjct: 448 NRTIFAVGDEKQSIFSFQGAQPREFDARRRELHRKFTAAGLKFDPVAFTYSFRSGAAILH 507 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + + + + + +I+ + + Sbjct: 508 SVDHVFRDPAIYKSIHSVEIGHPLHNALADAGPSVIELWDLAEADDRQDIEGWRAPFDGV 567 Query: 363 EADNERE-EAISIAIALRMSLD--------------ENKKKSALITADRNLARRVKLELT 407 + A I ++ ++ L+ N V L Sbjct: 568 AVTSPEVKLARRIQAEIKRLVESGTLTGHEGERRPLRYGDMLILVRRRGNAFDAVIQALK 627 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 G+ + + + L+ + L +L +A+ D +A+A +K PL + + Sbjct: 628 HAGVPVAGADRLKLTEHIGIIDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFALAW 687 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIAT---QKNNTHVPHWQSRLSEEDKELAVLLV 524 R + + VL R+ + + + L D A +L Sbjct: 688 GRK--GSLRRALGEQAAGSEKFAAVLRRLEACETRAREETPFAFYAWLLGGDGGRARILR 745 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + L + + S + W + Sbjct: 746 RLGHEANDALDEFLELALNYERKAPAS------------------LQGFMAWLRSADTEV 787 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + + + + ++ + T + + + R + + Sbjct: 788 KRDMEISRDEVRVMTVHGAKGLEASVVFMVDTT----SSPADSQRVRLIQVPRGNGGEVV 843 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 + G + E + + Sbjct: 844 VWAGRKADDPKPVAEARKAM-----------LEETEDEYRRLLYVAMTRAADRLIVGGCM 892 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 N+ T+ L+ G T + + L + P F Sbjct: 893 PGNMRTVRKLSWYDLVDTGLTGSGLEKQT-LETPLGKVTRFARPEDVVALGTPATFVDQT 951 Query: 765 AQPRTYSFSEIKQLIND-----PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 + + + + D P A + + RGTL H ++ L Sbjct: 952 IALPDWLRTPAPREMQDDDSVRPSGQSAEGGRAVRSGESVQSRALALQRGTLVHRLLQSL 1011 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + M + E + R + + Sbjct: 1012 PDIAAERRREAARGFMARNASDWAEAD----------RTALADKVLALIAEPRFAPVFAA 1061 Query: 880 KIFVNIPAKMAIESIGIH---LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLID 934 + +E G+ ++G DR+ + V I D+KT A + Sbjct: 1062 GSRAEVAIVGRLERPGLQPALVSGQIDRLVVRPD-EVLIVDFKTNQAAPKSATEAPAVYV 1120 Query: 935 PQLSLEAAALKA 946 QL+L A L Sbjct: 1121 RQLALYRAVLAR 1132 >gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] Length = 1176 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 107/1118 (9%), Positives = 266/1118 (23%), Gaps = 212/1118 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEIT---------------GKKSTI--LPIIKSLGDVVEE 87 + T++A EL + ++ P I + Sbjct: 86 QEILGLTFTRKAAGELAERVNQRLRMLEASGLWSPPDDPDGTPSLGESPTIST-----YN 140 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + ++ + L + R+L A + +++ + + LP A + Sbjct: 141 AYAGRIVGEHGLRLGIEPDARMLSEAAAWQ-FAHEVASGWDGDMSQVTVKLPSVTAAVLA 199 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA--------------DFLKIASK 193 A L++ ++ ++ L + + + + Sbjct: 200 TAGELSEHRRSVDELRAYYDSLLGSLDAIPFAPRKRSLGDAGKALTAKAKGHQQILPLIE 259 Query: 194 YWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + + +A + + +++ + A ++ Sbjct: 260 RYQSLKKDRSALDFSDQIAFAAELADRFPAIGAIERARYRMVLLDEFQDTSSAQIAFLAA 319 Query: 249 VANHPNGAI---VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V V+ D H W + + + + +A L Sbjct: 320 VFAAGETQQRPGVVAVGDPHQSIFGWRGASVTTLSAFRRSFALPGSDLTPVASLATSWRN 379 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + + + S V + P +A Sbjct: 380 DAAVLDAANVTAAPLNRASRVPVATLR-----------------PRPDAGPGALAAARYL 422 Query: 366 NEREEAISIAIALRMSLD-----ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 E +EA ++A + E + +A++ R+ + L G+ + Sbjct: 423 TEADEARAVAQWVAERRRPLRSGEAPRTAAVLCRKRSQFVPMLDALHDAGVPAEAVGLGG 482 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS------RAKNALELV 474 L T L S+L + + + L+ P + G + + + Sbjct: 483 LLQTPEIVDLVSMLWVVDDPSRGDHLMRLLTSPAMRLGAADIAALGSWAKELHQRHQDDA 542 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 A + + + + VP + L ++ + Sbjct: 543 AAATEERAEGGSAEPASSESDAGEGAPSEPVPGPDGEAARRGARAERDLAQDTRDEVSLV 602 Query: 535 VTYKTNKNSTCGNLS---------------------------------ISDWTKLTVTCL 561 +++ + + ++ + Sbjct: 603 EAIGELPDASWRGRDGEYLCDVARERLRGFHTSVQRLRLLSGLPLADFVGEAERVLGLDI 662 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + + + ++ FS + + +EW+D + G + Sbjct: 663 EVLARPGYDPSSARAHLDAFADIAGTFSVQAQRPTLGGF--LEWLDAARQEERGLEMPAI 720 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP-------------------------- 655 + +L ++ L +D +++ GL EGV+P Sbjct: 721 EVNPHAVQVLTVHAAKGLEWDVVVVPGLVEGVFPSLGGSTRAEGEQWQYKPHKARGWLSG 780 Query: 656 -KNTAKNPFLSRVMQSDLNLKTAEKYIGQA-------------------AHDFEMANGTR 695 ++ + R L + AE A + R Sbjct: 781 LQSIPYDLRGDREGLPALAVTGAEDSDELADRFTEFCEQGLKHAVTEERRLAYVAFTRAR 840 Query: 696 HLIYTRSL---RENNIPTIASRWLQRLLVL------GGTDFFDNLKKRGQCYLDWTRKLD 746 + + P SR+L LL ++ + + LD Sbjct: 841 STMLLTAPIWYASGTTPRETSRFLTELLEEPDLGASIERLHWEQMPPTQVDGERPSNPLD 900 Query: 747 YTTKQPH------YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + P Q R +P A + + Sbjct: 901 ADVLTATWPLDAMADQRAHLVPAADQVRALRTRLQNGEALEPAGQLALGLEGTIEDREQE 960 Query: 801 KDPDRTDRGTLFHNIITELIKK---------RINKNTPEINHLMKQIIDSHFEKENLPPH 851 + +R + ++++ + + +++ + S Sbjct: 961 MELLLAERQRERTRLRSDVVLPSHLSASQLVALASDKDLFARRLRRPMPSEPAVAARRGT 1020 Query: 852 IDIIWRHLFHKISH--------------------------SFLEHEEKIQSSIEKIFVNI 885 W + + +FL E + + V + Sbjct: 1021 AFHAWVERHYGAAALVDLDELPGFGDEDVAADEMLPVLQTNFLASEWADR---VPVDVEV 1077 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + + G + G D + G + D+KTG P T + QL+ A Sbjct: 1078 ALETVVA--GYAVRGRIDAVFARDGGGFTVVDWKTGAKPAGPTL-RHRSLQLAAYALGYA 1134 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 +D V F+ + + + + Sbjct: 1135 R--LRGLDPEDVDAAFFYAATGETYRPDVASQRDLEEL 1170 >gi|262170719|ref|ZP_06038397.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus MB-451] gi|261891795|gb|EEY37781.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus MB-451] Length = 1148 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 116/987 (11%), Positives = 249/987 (25%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ +KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELL----SKLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTG 177 Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + ++ Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLQINGEQVTIGSEVSPLKGDVESYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340 LL + D L +++ I L Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + + E + L + + + ++ D Sbjct: 358 AKFASSGHKPSITEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGT 725 ++ + + + L + R +N + S + LL L G Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 726 DFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PF 760 + ++ + T + + + R + + Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFADGREVLLRG 976 >gi|327484828|gb|AEA79235.1| Exodeoxyribonuclease V gamma chain RecC [Vibrio cholerae LMA3894-4] Length = 1148 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 116/985 (11%), Positives = 249/985 (25%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEDVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSVWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++++ G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727 + + + L + R +N + S + LL L G + Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772 Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762 ++ + T + + + R + + Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P A + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|254225833|ref|ZP_04919437.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V51] gi|125621647|gb|EAZ49977.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V51] Length = 1148 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 115/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THMQ 179 Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + ++ Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AMMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P A + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACCNGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|32034248|ref|ZP_00134459.1| COG1330: Exonuclease V gamma subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209344|ref|YP_001054569.1| exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae L20] gi|126098136|gb|ABN74964.1| Exodeoxyribonuclease V gamma chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 1114 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 86/786 (10%), Positives = 198/786 (25%), Gaps = 93/786 (11%) Query: 22 IPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSL 81 + ALL + +P P T+ V + Q L+ + + TG + Sbjct: 13 LAALLIRLQQNDPNPNPFEPE-----TVLVQSVGMAQWLQMQIADQTGVAAH-------- 59 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLE-------LARLILIWRNKLPDIIKDLYPES 134 T+ L Y + P + + E L RLI + K + L Sbjct: 60 --YQFPFPTSFLWQQYRVLFPELPKENIFERESVTWRLMRLIPKYLEK--AEFESLNLYL 115 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--------------EDLHALKNEKYGMW 180 P LA +AD+ D W E L A+ + Sbjct: 116 NKDARQYPLKLYQLAGKIADLFDQYLVYRPHWLVHWESNRIEAVLNEILAAIAFREKNE- 174 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVG------------YQIALMRAEAEHLMKGTKG 228 L+ S W + ++ A S + E Sbjct: 175 -RDILANLRWQSMLWNALIEDIKADSDEEVFMTSHRAYLQQQYFEKLDNLTESEKSKLPK 233 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-------TITEKSTNI 281 I + G + ++ ++ H + + + + Sbjct: 234 RIFVLGISSLPATQLAVLKKLSEHCEVYLFFLDPSQEYWAESVEDKTLEKLALKRQLSQQ 293 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + RE + +L + + Sbjct: 294 DLDALLAEQGNQ----LLTMWGKQGREFLVQLVEQEPDNTIEVFDEYEGDSNLIKLKNAI 349 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRN 397 + + + + + + + E + L + N K +++AD + Sbjct: 350 LNFNNEQRFELAEQDRSIQIHACHSVMREVEVLHNQLLQMFERNPTLAPKDIIVMSADID 409 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + I +S + + LLN ++ L+ Sbjct: 410 KYAPYINAVFARYEKGDKRYIPFTLSDQKVTAVDPIIASFLMLLNLKESDFSAESLLDLL 469 Query: 451 KH----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + R + + D + + + Sbjct: 470 DVKALRERFNLQEQDLQTLRHWVNQVGIRFGLHIQQDDWQNHNAWENGLTRLLLGTSLKA 529 Query: 507 HWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + L ++ + + + ++ +W + Sbjct: 530 ESGIWQDSIAFNESYGLSATLVGFLAKFIENLTAWYEFIQQDHTLEEWKARIQKLI---- 585 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE-- 623 + + L+S ++ + + I+II L++ + + + Sbjct: 586 --GEFYQESNESLDALLLLNSTLEEVANKAEQAEFSESIGIEIIRLLLEDKLNQQQSSLQ 643 Query: 624 -KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + L R + F + L G+NE +P+ + N F +MQ + Sbjct: 644 FLAGKVNFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSF--DLMQYAPKRGDRARRDD 701 Query: 683 QAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 E + + + +N + S + +LL + + + Sbjct: 702 DRYLFLEALLSAQEIFYLSYIGQSATDNKQRLPSVLVSQLLDYLAEHLTEQARLQASEKD 761 Query: 740 DWTRKL 745 +++ L Sbjct: 762 NFSEAL 767 >gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798] gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798] Length = 779 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 74/711 (10%), Positives = 181/711 (25%), Gaps = 112/711 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKS----TILPIIKSLGDVVEEKFTADLLLSYNLNP 101 ++ T +A +E+R + G + + + D Sbjct: 60 NILAVTFTNKAAREMRERIERLVGGAFGSYEARNITMGTFHSICSRVLRRDGGAIGISPN 119 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V RLI N++ K P S + S +A+ Sbjct: 120 FVIYDDDDQI--RLIKQALNEIGLDEKQYAPRSIQARISSAKSAL--------------- 162 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA---- 217 ED + Y + + + L A + ++ Sbjct: 163 --LDPEDYSSQGVSSYFDEIAA------RVYRRYQQLLEINQAVDFDDLLMKVVLLWKSY 214 Query: 218 -EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + +++ + A L++ + + D W Sbjct: 215 PDILQQYRDRWQYVLVDEYQDTNRAQYMLINLLTQEHRN--IFVVGDEDQGIYSWRAADI 272 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 ++ + + + L+ + + +V++ + + + L + Sbjct: 273 RNILNFERDYPEAK---------VILLEQNYRSYQEILDVASHIISSNRLRRPKKLWTNK 323 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI---ALRMSLDENKKKSALIT 393 S V + EA +E++EA IA L + A++ Sbjct: 324 SGGAL-----------------VRVREAYDEQDEASYIAREISRLTSLGEYTYSDFAVMY 366 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-- 451 + +R V+ +R+ I I G + + L I +D ++ +++ Sbjct: 367 RTNSQSRPVEEAFSRYRIPYQIIGGTRFYERREVKDVLAYLRLIHNPHDAASLRRIIENT 426 Query: 452 -HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 K L + + + + I L+ + + Sbjct: 427 PSGRGIGKGTMKTLEDLASRAHISLWDAIEIALGIKSLEEVGAFLPNLE----------- 475 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 L + + LV L++ + Sbjct: 476 ---------IPKLQSKAKESLKQLVGLIYELREQRDILTLPHLIDTLLIKSGYASFLSSG 526 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 +L E + L S+ + ++ + + V + + + Sbjct: 527 AEEDLERLENARDLISIAQDYAAIDTSEA-----LVEFLQEVALQSDVDTMQNNGNQVTL 581 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + ++ L + + + G EG+ P + + + + Sbjct: 582 ITLHAAKGLEYKVVFIIGFEEGLLPHARSMDR--------------ESDIEEECRLAYVG 627 Query: 691 ANGTRH-LIYTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 L + + N + SR+L + +L +RG Sbjct: 628 VTRAMEKLYISYAFHRNVFGATQTNVPSRFLANIPPDLLDGSLPSLGRRGP 678 >gi|121726772|ref|ZP_01679990.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V52] gi|121630806|gb|EAX63190.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae V52] Length = 1148 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 114/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + ++ Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVESYLQESLHLN 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AMMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] Length = 804 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 86/757 (11%), Positives = 193/757 (25%), Gaps = 86/757 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A EL+ + G + + + A+ + + Sbjct: 65 GEILAITFTNKAAGELKERVGALVGGR-MWEMWVSTFHSSCARFLRAEASAEAGFDRNFT 123 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 RL+ + +L P LA I ++ E Sbjct: 124 IYDSDDS-KRLLSMVAEELELDSNRFPPRM-----------------LAAKIGDLKNELI 165 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE------ 218 E A + + L + + ERL NA + ++ Sbjct: 166 TPEAALAGVEDPFD-------LLLGQVYRRYQERLAAANAMDFDDLIMRAVQLLQTNDEV 218 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV-------LPGLDCHIPTAIW 271 AE + +++ + A L+ + G V D + Sbjct: 219 AERW-RARFRHVLVDEYQDTNHAQYVLIRELVGAGAGTQVGAETSALTVVGDSDQSIYRF 277 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 T ++ + P L + + V GR Sbjct: 278 RGATIRNIEEFERDF-----PNARTVLLEQNYRSTQNILSAANAVIAHNEGRR------- 325 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KS 389 E ++ + AD+E +EA IA + + K Sbjct: 326 --------------EKRLWTEAGDGRQIVGYVADHEHDEAGFIATEIAELVRAGAKHGDI 371 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 A+ N +R + R + + G + + L I +D +++ + Sbjct: 372 AVFYRTNNASRVFEEAFIRHAVPYRVVGGQRFYDRREVRDVIAYLRVIANPSDAVSLTRI 431 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 + P G + + + + + +L + + Sbjct: 432 INTPRRGVGDKAQAQIASWAGSQGKTFWEGCQAAAEGAIPALAARSQRSVAEFVAMLAGL 491 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYK--TNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + LV ++ T T+ ++ + + V + Sbjct: 492 RDELSAGELTVGELVAQTVERSGYRATLADSTDPQDGARLENLDELISVAVEYGEMAAGQ 551 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN-AIEWIDIITRLIDGETVKPKIEKSS 626 E + + E L ++++ ++ + D + + +S Sbjct: 552 EGGAVADGLAGELRVALPPEEEGESGADGDAGVAKLRDFLEQVSLVADSDRLPEGGSESG 611 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + ++ ++ L F + + GL EG +P + + + L + Q Sbjct: 612 VVTLMTLHTAKGLEFPVVFMTGLEEGQFPHLRSLGDPVELAEERRLAYVGITRAREQLYV 671 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 TR+ R + + SR+L + +RG+ W Sbjct: 672 ---------SRSLTRTFRGSPMTNPPSRFLIEIPPHL------VSWRRGEPDQTWAGFTR 716 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 R + P L ++ + Sbjct: 717 SDFGSVSAPRAENAAPFRRPAAERGPRPRPNLRHESF 753 >gi|227502911|ref|ZP_03932960.1| helicase [Corynebacterium accolens ATCC 49725] gi|227076333|gb|EEI14296.1| helicase [Corynebacterium accolens ATCC 49725] Length = 846 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 95/755 (12%), Positives = 201/755 (26%), Gaps = 88/755 (11%) Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 +S+ + + + +E P+ + V+++ D+E +A +R Sbjct: 80 ADQSVFAFRGANSQFLEEFPAENSVELSQPHRSGSPACVSIV--DSEGRLRDVVADTVRR 137 Query: 381 SLDENK---KKSALITADRNLARRVKLELTRFGINIDIS-AGIPLSTTLHSSILTSLLNA 436 ++ + A+I +++ L G+ + IS + L+ S + L A Sbjct: 138 RHLDDGVQWRDIAVIVRSTADIGQMRRTLLAAGVPVHISPTDVILAEQRLVSAMLLALRA 197 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG----------------NK 480 + + + L+ P+ RG + Sbjct: 198 LEEDLSNAELEELLTGPVGGSDPVTLRRLIRGLRRWAPDTRGMDSLRELLHGELPDFNGQ 257 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + + V +A + + E L + + T Sbjct: 258 LTEREFSILERVRAVLAAGRQAMQAQASVEEILWEVWSATELDMRLQASALRGGATGSQA 317 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 +++ D + L ++ +E + + I + I A Sbjct: 318 DRDLDAMMALFDAAGDYSE--RRPGSSLQSFLTHITEQELPTGVRDRRTAIPQAVEIITA 375 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE-SRLLNFDTLILGGLNEGVWPKNTA 659 + + T ++ G T I G + LL+ D ++ Sbjct: 376 HGAVGREWDTVIVAGAQEGAWPSLGETGSIFGQEDLIDLLDRDIEPDTPVSHIASRLAEE 435 Query: 660 KNPFLSRVMQSDLNLKTA------EKYIGQAAHDFEMANGT--------RHLIYTRSLRE 705 + F + L A E + + G +R+LR Sbjct: 436 RRLFHVATTRHRSRLLIAAVENSNEDAFAEPSRFIAEFTGRGVDVPGTMARREASRALRA 495 Query: 706 NNIPTI-----------------------------ASRWLQRLLVLGGTDFFDNLKKRGQ 736 P S Q V+ + + +++ Sbjct: 496 TQFPRELGLDVPEPAPVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPESGEAERRQAA 555 Query: 737 CYLDWTRKLDYTTKQPH---YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 L + + P R ++ S S ++ L+N P Sbjct: 556 RQLARLAQAEIPGAHPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLKAIVG----- 610 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 + + RGT+ H + + + E L+ Sbjct: 611 -NLAEDPSGAEHLLRGTMAHAFLEAIGRGM----DAEKARLLVMEAYELILDVPQWQLQS 665 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 + F ++ + ++ + E V + + + I + GF DR+ G Sbjct: 666 KLE--EFSRLLERTQQWAQQSEVKNELAGVEVLVYVEVAP-DIRVGGFMDRLMKDGDGNY 722 Query: 914 DITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN---LFYIRLKQKFK 970 + D KTG + A+ + QL AL GSF R + + Sbjct: 723 LVVDLKTGKS-AATQAEAEENRQLMTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKD 781 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 IT + E E+ L + L+ + Sbjct: 782 SSKITTRTQSQLTAEALEEFSALLPSLAAELRGPQ 816 >gi|238751475|ref|ZP_04612967.1| Exodeoxyribonuclease V gamma chain [Yersinia rohdei ATCC 43380] gi|238710342|gb|EEQ02568.1| Exodeoxyribonuclease V gamma chain [Yersinia rohdei ATCC 43380] Length = 1123 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 89/766 (11%), Positives = 193/766 (25%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L + +L S +L L+ L D + Sbjct: 62 ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLPQ----LLDNPAFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKY 194 LS LA +AD+ D +W E + L + Sbjct: 115 LSDDSDKRKIHQLAARVADLFDQYLVYRPEWLEKWERGQLVDNLDDAQQWQALLWVELTR 174 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANH 252 +T +L + +R E + + I G + P + + + H Sbjct: 175 YTRQLEQPEW-HRANLYQRFIRTLLESDVCPAGLPKRVFICGISALPPIYLQALQALGKH 233 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQ 293 + ++ + I + Q Sbjct: 234 IDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYREATEVKLFRQPEQAEQLFNADGEQ 293 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSD 338 LL D L + +++ + + Sbjct: 294 DLSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIEPDNLLHGIQHDMLELEDHAVIGT 353 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394 T ++ + ++L + + E + L L + + ++ A Sbjct: 354 TPETLAHSDQKRELALKDRSLSLHVCHSPQREVEVLQDNLLRLLAADPELTPRDIIVMVA 413 Query: 395 DRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 D + + IS +LL+ + L Sbjct: 414 DIDSYTPYIQATFGNATGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQVLAL 473 Query: 450 VKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-----------KSLVLDRI 496 ++ P F E L R + + +R + ++ +L + + Sbjct: 474 LEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELNLPATGQHTWHFGITRMLL 533 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 ++T +E LA L + L+ + ++S+W+ L Sbjct: 534 GYAMDSTAGDWQGVLPYDESSGLAAELAGQLA---ELLMQLSQWRQQLAEARALSEWSPL 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L + + L E + + S I D + +D E Sbjct: 591 CRQLLDSFFEPDDETDAVLVLIE--QQWQKVISYGIAAQYPDIVPLSLLRDELASRLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+G++P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPLGF--DLMAKQVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] Length = 1192 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 97/864 (11%), Positives = 213/864 (24%), Gaps = 127/864 (14%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPAT 242 L + R +A + + +++ + A Sbjct: 290 LLDLVAEYRRRKRAADALDFGDQIAFAAELARSVPYVGEVERARFRVVLLDEYQDTSYAQ 349 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 L++ + G V D H W + ++ + L Sbjct: 350 VELLAGLFG--GGHAVTAVGDPHQSIYGWRGASASGLARFPERFRHADGAPAGVRYLSTS 407 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + S + L + + L + Sbjct: 408 WRNDAAVLAAANIAS------------APLRAELTTHVPPLDLRPGAGAGVVSAHVATTL 455 Query: 363 EADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 E + E + + +A++ R+ V++ L R G+ +++ L Sbjct: 456 EEEAEAAAEWVAERWRPGTHPHGRVTAAVLCRKRSQFAAVEVALRRRGLPVEVVGLGGLL 515 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNK 480 +T + +LL A+ + ++ L+ P G + + RA + R Sbjct: 516 STPEVVDVVALLEAVHDPSRGDSLLRLLTGPRVNLGAADLHALGSRAADLAREDDPRRAA 575 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT-------- 532 D + + ++ V + L Sbjct: 576 GRAHSDGDAPAAPDGGSGEADDLAVVEGDVVDHRSLVDALDDLPQPGRAARDGRVLTPAG 635 Query: 533 --PLVTYKTNKNSTCGN--LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 L ++ S G LS+ + L + G+ +S Sbjct: 636 HTRLAALRSVLRSLRGLTYLSLPELVVQAERALGLDVEVATADAVATLVPDAGERVSRRG 695 Query: 589 SKIIETGSCIKANAIE------------WIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + ++ + A + W+ + + G + + + ++ + Sbjct: 696 REHLDAFRDVAATFAQSADAATLGAFLAWLGVAQKQERGLDLPVREPDPDAVQVITAHAA 755 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNP-------------FLSRVMQSDLNLKTAEKYIG- 682 + L +D + + GL +GV+P L ++ D A ++ Sbjct: 756 KGLEWDVVAVPGLVDGVFPTIAEAANGQRAESAWLTDVAALPYPLRGDDADLPAFRWEAA 815 Query: 683 ------------------------QAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWL 716 + + R + + + P S +L Sbjct: 816 VDTKELDGLRGEFRAACGEHALAEERRLAYVAFTRARRELLLTAHWWGTSSTPRRLSPFL 875 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 L+ +G + ++ T P + P + T + + Sbjct: 876 VELVEVGLVTADGWTAAPDAADSNPRDDVEVTASWPAVDDVEVGSPRDVLRATAALVDAA 935 Query: 777 QLINDPYAVYARRIL-------------------------------KLDFIPHFKKDPDR 805 +AV A +L + + DR Sbjct: 936 ATDRAAHAVAADGVLVDAAGHDIVELARILLAERDERSGHEVEMPAHVSASGLVRLATDR 995 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR---HLFHK 862 + + + T + +Q S + P D Sbjct: 996 DEFALQLRRPVPAEPTVHARRGTRFHEWVEQQFASSALFDVDDLPGADDGDLPGDADLDV 1055 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF---VDITDYK 919 + FL E + I V + + GI D + G V + D+K Sbjct: 1056 LKEKFLVSEWADR---TPIAVEQDVETPLA--GIMTRSRMDAVFADPDGEPGSVVVVDWK 1110 Query: 920 TGDNPKKETAQKLIDPQLSLEAAA 943 TG P A+ + QL++ A Sbjct: 1111 TGRPPTDTAARAAREVQLAVYRLA 1134 >gi|315655699|ref|ZP_07908597.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] gi|315489763|gb|EFU79390.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] Length = 1164 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 114/1020 (11%), Positives = 257/1020 (25%), Gaps = 125/1020 (12%) Query: 45 ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + P A + L + +L S G V E + P Sbjct: 71 PRMLVLSPNAGAARRLSERALEIRAQSEDPGCLL--GVSKGFVAEVFARFNQWRKAEGLP 128 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V RL A +++ ++ L ++ + + ++L D I + Sbjct: 129 EV----RLATDAEVMVQIQDFLAEMPLE-------EELRAALETQGFRRDLVDGIFRVRA 177 Query: 162 E--EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + + + + + + L+ +S + ++A A Sbjct: 178 FAGDVSSDSAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLDTASLFEEYLLAVKAGA 237 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I ++S A +G ++ + + + Sbjct: 238 -----PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGASPHLS 290 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 ++ L + L R V S ++ Sbjct: 291 ERLWQQLETIPG-----KGAIEILLTQEHVPAPLRQAWRIAVNRLGVHGISARLWNSIQE 345 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITA 394 + E + L+E + + I L+ + + + A++T Sbjct: 346 PSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTR 405 Query: 395 DRNLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIA 447 AR+V L I + + L+ + L ++ A+ + +A Sbjct: 406 SSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLA 465 Query: 448 TLVKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 L+ L + Y + + + G+ D D I Sbjct: 466 GLLSSALVGWDVWRMRRMDSSLYDLQLQPPADSENAAGSTGVMDSADTADDEGSGIQIVG 525 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 N ++ + ++ + +V VD I+ I + +V Sbjct: 526 NLPYIQQFLRQVISGQNDFSVRSVDEIISAIPDAAQLVDLAQALRSGWQQWKADSGSVQL 585 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-------- 612 L D + L L ++ + + + D Sbjct: 586 LLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAAD 645 Query: 613 ---------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + TV P + ++ + ++ + + GL +G WP Sbjct: 646 FAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWSLVAVVGLTDGNWPAMRWPGSI 705 Query: 664 LSRVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 L M + T G H F + + ++ + Sbjct: 706 LGSSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFL 765 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKR----- 756 + L + ++ + R +D T + Sbjct: 766 TSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPTAAGLLAKLAAGD 825 Query: 757 -PKPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 P P S S +++ + +P + Sbjct: 826 CPSAHPENWIGALPVSGDETESAEIHIYASGLERALENPLDYVLSWS---GYSNDEDDPY 882 Query: 804 DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKENLPPHIDII 855 G + H L ++ + ++ ++Q + + ++ Sbjct: 883 AANKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGDTWVESN 942 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP----AKMAIESIGIHLTGFADRIDLLKSG 911 +R Q + + + + DR+ + G Sbjct: 943 FRRHIETCLVPLATFLVNHQ---YPSRFEVRYPCRLETSSGKGALVYNARIDRV-MFAHG 998 Query: 912 FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKI 971 V I DYKTG+ A+ + QL+L AA A Q +A + +++ K Sbjct: 999 RVIIMDYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKK 1058 >gi|311696605|gb|ADP99478.1| exodeoxyribonuclease V, gamma subunit [marine bacterium HP15] Length = 1208 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 101/966 (10%), Positives = 227/966 (23%), Gaps = 111/966 (11%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI-----TGKKSTILPIIKS 80 L +V R++P+ P L S T V + Q L+ E I + Sbjct: 30 LRRAVVYICRHNPMPP--LESETFLVQSNGIAQWLKLALAEKRTEDGLEGGLGIAAGMDF 87 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L +L P S + + RL + + L Sbjct: 88 LFPARFIWQAYRAVLPDGEVPEQSPFDKRRLVWRLYRLLPRLVGQDEAFTPLARFLEGND 147 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY--GMWWLLAADFLKIASKYWTER 198 LA+ +AD+ D + W + D R Sbjct: 148 PDLRNFQLAEKVADLFDQYQVFRADWLAAWEQGKDVIITARAEEKPLDAETRWQPLLWRR 207 Query: 199 LVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 LVE + + + R +A I++ G + + ++ Sbjct: 208 LVEDVGADAHTSRSQIHTRFMEQGQRLQAPANPSRLPTRIVVFGVSSLPRQALEALYVLS 267 Query: 251 NHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + + +++ H Q++ L Sbjct: 268 RFSQVVLCVHNPCQFYWADIISDRELLTAERKRGRTHPTLSAIEDPDQLH-QHANPLLAA 326 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE--------------- 346 + R+ ++ L N R + SD N + Sbjct: 327 WGKQGRDYIRLLDEFDNPDQYRGSFQTPDQKIDIFSDHGNPEAPRLLHQLQNDIHNLTPL 386 Query: 347 -----NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD----ENKKKSALITADRN 397 + + +A +A + + E + L + + + ++ D N Sbjct: 387 REIRQQQRQLDVQQDHSLAFHQAHSPQREVEILHDQLLAAFNVDPTLRPRDVIVMVPDIN 446 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + + + I IS L +L++ I +L+ Sbjct: 447 VYAPHIQAVFGRYQPGRKRHIPFTISDQGQRHHEPVLIALETLMSLPRSRFAVSEIISLL 506 Query: 451 KHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD-----RIATQKN 501 + P E L+R + + + +DL + + + + Sbjct: 507 EVPGIRDRFGINEDEIPLARRWVEGANIRWGLHGQHRESLDLPAELERNTWQSGLRSMLL 566 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSISDWTKLTVTC 560 + + E L + + V +T + + + +W L Sbjct: 567 GYGMGDDEPWAGVEPFGEIGGLQASLAGRLNDFVHQLETLWQALQTHRTPDEWEHLFSEM 626 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L L + L + D++ +D + Sbjct: 627 LGQFFHKVEGSDLLLLNRFRRQLEQWLEDALAAGLEEQTLPLNIVKDVLLEGLDEGGLNQ 686 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + R + F + L G+N+G +P++ F ++ + Sbjct: 687 RFLAG-KVNFATLMPMRAIPFRKVCLLGMNDGDYPRSRPPVDFDLMAQDYRPGDRSRRED 745 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + + L + R ++ S + +L GQ Sbjct: 746 DRYL-FLEALLSARAQLYISWVGRSIKDDSERPPSVLVGQLQ----DHLDSLWSVSGQPE 800 Query: 739 LDWTRKLDYTTKQPHYKR-----------------PKPFPPLEAQPRTYSFSEIKQLIND 781 L + R P P E F+ ++ + Sbjct: 801 TKVIEALTTQHPLQPFSRSYFPKANGLEEGGKGENSSPRPLAEVLEARRLFTYEREWRSA 860 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK----- 836 A + ++ D I ++R+ ++ Sbjct: 861 HGGEAAAQTQSALPYQAPEEPISLNDLAAFLKKPIDTFYQRRLQVRFEDVEDDDTDNENF 920 Query: 837 --------QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ + + L D + + + Sbjct: 921 ELDGLDRWRLDNELIQDGLLKASSDEELHDRLQATLDR-----MARRGDLGMGVTEHRLR 975 Query: 889 MAIESI 894 + Sbjct: 976 SELAGR 981 >gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS] gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS] Length = 972 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 106/889 (11%), Positives = 213/889 (23%), Gaps = 150/889 (16%) Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--- 228 L D L L E ++ + ++ G Sbjct: 167 LDFNAVAAEDQDVGDLLIRI----RSGLREDQYIDFSLMIRDVVDSIRANVPGLENGIGN 222 Query: 229 --PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I++ P L+ + V+ D W + Sbjct: 223 LRHIMVDEYQDVNPCQEELVRLLHQRSQTLFVV--GDDDQSIYAWRGADVSNILGFQGRY 280 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 ST + L + S+ + + I + Sbjct: 281 RNST---------VHTLSQNFRSTAPIVQASDSFAAVL--------------LGPSRIAK 317 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLEL 406 N + D+ ++ + EA +A +R L + I L L Sbjct: 318 NPAASTNLIPQDLRVLWFPDRSTEAGWVAARIRDLLGTAYNDNGNIR---GLTPADFAVL 374 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R + + T+ L + A P L R Sbjct: 375 MRSTRQAEQDG------VPRHTAFTTALENLRIPFSLEAGGGPFDRPQTAVLRSTFELLR 428 Query: 467 AK---NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + + + H P SR+ ++L L Sbjct: 429 NVPLDRNAVQQHFNNEVILAYPDADFTALARVLTDWSRRIHRPQGSSRIRLRPQQLVYDL 488 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 ++ + D + + +D ++ + Sbjct: 489 LEAFNIA----------------QTNFGDDIMRDIGLFSRMIMDVETVYMSVDSRQRFSE 532 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + ETG + + + ++ + + + + L F Sbjct: 533 VLNFLQNAAETGYDVSTDDVL------------------QRPDAVTVSTVHKMKGLEFPC 574 Query: 644 LILGGLNEGVWPKNTAK--NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + + + +PK + VM S +N + + F A Sbjct: 575 VFIVDVEAHRFPKRRSSYSGWLPPGVMTSAINRGAYQSTPDEEIRLFYTAATRAERYLHV 634 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 S EN Q + P + P Sbjct: 635 SGAENLPQAR--------------RPARRSPYALQLATHPAVVQNAGGLPPGIVQATPRR 680 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 +E SF+EIK + P R+ L+ + G H I +L + Sbjct: 681 RVEDADYPTSFTEIKYYLQCPRGYQLRQRYGLNPVIPEMFG-----YGQTVHTSIQKLHE 735 Query: 822 KRINKNTPEINHLMKQIIDSHF--------EKENLPPHIDIIWRHLFHKISHSFLE---- 869 N + ++Q++ F P R+ +I+ ++ Sbjct: 736 LYPNTPPSQ--DQVEQVVFDTFHLKHVPQSGDPVNRPGAYENSRNRAVEIAEDYVASFGA 793 Query: 870 -HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID-LLKSGFVD---ITDYKT---G 921 E + Q V + I + ++G D + + G + I D+KT G Sbjct: 794 DFERERQ-------VEAVFE--IPTSNCVISGSIDLLLHEDEHGEILHAEIIDFKTMEGG 844 Query: 922 DNPKKETAQKL--IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 + P + + Q+ L A A V L + Sbjct: 845 EAPAENDDLDWTELALQVQLYARAADQVMGQNTRTGSVHLL------------KDNQRIE 892 Query: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 E +L N+ VT + + P +R + + ++ + Sbjct: 893 VPITQEAVNAALSNIEWAVTGILGSDFP----MRPHPEKCGKCDFKAIC 937 >gi|325843346|ref|ZP_08167929.1| hypothetical protein HMPREF9402_2074 [Turicibacter sp. HGF1] gi|325489375|gb|EGC91748.1| hypothetical protein HMPREF9402_2074 [Turicibacter sp. HGF1] Length = 644 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 74/537 (13%), Positives = 153/537 (28%), Gaps = 116/537 (21%) Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-----------G 632 + LF +++E G + + + ++ + + + + Sbjct: 1 MLELFEQLVEIGQEEAVSLENFATVFKAGLEEMSYATVPPRLDQVSVGELRRARYQLVTD 60 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN------LKTAEKYIGQAAH 686 E+ + G+NEG P ++ LS V + L + E+ Sbjct: 61 LGEAGQYGIKHAFVLGVNEGQIPSVMGESSLLSEVEREQLKELGIELAPSLEQSQQDEQF 120 Query: 687 DFEMANGTRH--LIYTR-SLRENNIPTIASRWLQRL--------LVLGGTDFFDNLKKRG 735 + L + S + + S +L G +F D+L ++ Sbjct: 121 ILYTVFTSPKQTLTLSYVSSNDEGKEFLPSYVYNQLKEMFPLSQEAHIGREFDDDLYEQL 180 Query: 736 QCYLDWTRKLDYTTKQPHYKR--PKPFPPLEAQPRTY----------------------- 770 L KQ R +P + Sbjct: 181 TTLNQSVAHLLAHLKQNPAYRSYYEPLLAYYKEHNPLIYQMVMRILGYENEVTNLDEVLT 240 Query: 771 ----------SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 S S ++ +A Y R L+L + D G L+H + + Sbjct: 241 KKLYSEEIVASVSRLELFNQCEFAHYLRYGLQLKDRE--RYQLDLPHIGELYHEALKRIA 298 Query: 821 K------KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-----HLFHKISHSFL- 868 + T + + +++ ++ L + R + + L Sbjct: 299 TMIQKENRTFADLTQDECQTLAKMVSDELSEQLLYKILKQNKRMMKLTERLTHVVYKTLI 358 Query: 869 -EHEEKIQSSIEKIFVNIPA------KMAIESIGI------HLTGFADRIDL--LKSGF- 912 + QS + +F +P + I+S I L G DR+D+ K Sbjct: 359 GLKYQSSQSEFKPMFFELPFQTGKSNGIHIDSRPIGKGFKLSLKGIIDRVDVAKSKDESQ 418 Query: 913 --VDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQK 968 + I DYK+ + + + QL + + ID +V L Y + + Sbjct: 419 AYLRIVDYKSSQQDLELDKVYYGLSLQLLTYLDVVVTNALQLIDMPAEVGGLLYFHVHRP 478 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYD 1025 I+ D + D E+ + L + + + ++ +YD Sbjct: 479 I----ISKDDQDLLRDVALEEQILRLHQ--EDFK--MKGYLP-----------DDYD 516 >gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1191 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 66/673 (9%), Positives = 166/673 (24%), Gaps = 64/673 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV------------ 85 + V T +A EL + + P + Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRKALTEAGVTEPEPLAPPGAGPQDEHTPGEPVI 116 Query: 86 --EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 F LL + L + RLL A + L + P + P Sbjct: 117 STYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREA--------PGAHPALTR 168 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFL 188 + L +L + + + L + A L Sbjct: 169 SFPDLVGDLLALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDL 228 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243 + + + + H L++ +++ + A Sbjct: 229 AGLVEQYRSAKRDRDLIDFGDQIALSATLADRHPAVGALLREEFRVVLLDEYQDTSVAQR 288 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L++ + H G V D W + + + + ++ + L Sbjct: 289 ILLAGLFGHGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFPHADGTPAARHSL---- 344 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 S ++ + +T + + + V Sbjct: 345 -------------SENRRSGGRLLDLANTMAAPLRAMHTGVEALRPAPGAERDGIVRCAL 391 Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 D +E +A + + + A++ ++ L + +++ L Sbjct: 392 LDTHADELTWLADRIAHLVATGTPPGEIAVLCRTAGDFGAIQSALVDRDVPVEVVGLSGL 451 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L ++ + ++ L+ P + G + L + L + R + Sbjct: 452 LHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGD 511 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 D +++ A + + + + + L T + Sbjct: 512 DPDRRLAEAVEGVDPAEVIS---LADALDTFLDGSADDELPFSAEARVRYAQLATELRDL 568 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + + + ++ T V L + E + + Sbjct: 569 RRSLADPLMDVLHRVLATTGLEVELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLL 628 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 A + +T+ +L +S+ L +D + + GL +P + Sbjct: 629 AFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGRE 688 Query: 662 PFLSRVMQSDLNL 674 + ++ +L Sbjct: 689 KWTAQPRVLPHSL 701 Score = 59.2 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 92/823 (11%), Positives = 188/823 (22%), Gaps = 65/823 (7%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 L+ A + AL+ A+ L + + A L Sbjct: 365 LRAMHTGVEALRPAPGAERDGIVRCALLDTHADELTWLADRIAHLVATGTPPGEIAVLCR 424 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD-----F 302 T + L D + + + + A L+ Sbjct: 425 TAGDFGAIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPR 484 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE-----NKIPNIQKCFS 357 I D+ LG + + R + D E + + + Sbjct: 485 WRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVISLADALDTFLDGSA 544 Query: 358 DVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISA 417 D L + R +A LR + +++EL+ + Sbjct: 545 DDELPFSAEARVRYAQLATELRDLRRSLADPLMDVLHRVLATTGLEVELSSSPQALAARR 604 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN----ALEL 473 LS + + A K +A ++ + L +N Sbjct: 605 RETLSN---FLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAH 661 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP 533 + + + L + ++ T P D + + Sbjct: 662 KSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPDAGALDSKGLKA 721 Query: 534 LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + T L + Sbjct: 722 FTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDFLLALHDHCLAGH 781 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL---NFDTLILGGLN 650 + + A + L + + + + + D L G L Sbjct: 782 GETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVRAHLDALASGALA 841 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + A + + E Q + +G T P Sbjct: 842 TSAIEEQAAPDAAVPAHPAPGEPDGPPEDLEPQPEDEESHEDGDWESWTTARPATTPPPV 901 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + + + L + D R + P + Sbjct: 902 AVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGELLRARQGTRDVVLPASL 961 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK--KRINKNT 828 + SE+ +L DP A + P RGT FH + + + + Sbjct: 962 TASELMRLAADPAGFAAELARPMPRPPQP-----AARRGTRFHAWVESRFEDVQLPMLDP 1016 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 E+ I D H + +F + E + + V +P + Sbjct: 1017 EELPGHDADIADEH----------------DLEALKEAFEQTEYAHR---TPLGVEVPFQ 1057 Query: 889 MAIESIGIHLTGFADRIDLLKSGF----------VDITDYKTGDNPKKETAQKLIDPQLS 938 + + + G D + L+S +I D+KT + QL+ Sbjct: 1058 LTLAGR--TVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP------LQLA 1109 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + A ++ A YIR + + + ++ Sbjct: 1110 IYRLAWAEHHRLPLEAV-TAAFVYIRTGETVRPRHLPGRREIE 1151 >gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] Length = 1160 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 80/815 (9%), Positives = 199/815 (24%), Gaps = 101/815 (12%) Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLM 246 + A + ++I + + P ++ Sbjct: 350 YEAAKERRGALDFGDLVARTVELLTVRSSAAWVLFKLDGGIEHVLIDEAQDTAPEQWDIV 409 Query: 247 STV-------------ANHPNGAIVLPGLDCHIPTAIWNTITE----------------- 276 + V D + Sbjct: 410 EALTEGFFSGIGSKRYGAGKVERTVFAVGDEKQSIYSFQGARPERLRQESQRYDVMVRGA 469 Query: 277 ----KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 + +S + + A + + + +G + + R L Sbjct: 470 GAAFAGVELATSFRSTPEVLSFVDAVFVSPERTRSLVGETVGAIPAHIAKRVDDHGCIDL 529 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI-------SIAIALRMSLDEN 385 P +D + + P Q+ A + E ++ +L Sbjct: 530 WPLYADEKPPERDAWDDPLDQEPVQSARKRMAADLAREIRRQVMAGVAVQDRKTRALRPC 589 Query: 386 K--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 L+ + + G+ + + + LS+ + L ++ +D Sbjct: 590 GYGDFLVLVRRRDATFEEIIRAMKAVGVPVAGADRLKLSSHIAFDDLIAVARVALYPDDE 649 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 +++A +++ PL A ++L +A K L++ + + + + Sbjct: 650 LSLAGVLRSPLCDIPDD-----GAADSLYELAGADPKRKRLWAALQARAGEHPSWGRAHD 704 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + + S + L++ I + +I + + Q Sbjct: 705 LIDFAIASSSRDPFAFFAGLLNRIDATGLSGRARILARLGREAEEAIDETLNQVLAAEQR 764 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP--K 621 +D L L + + + + ++ ++ T K + Sbjct: 765 GGIDLETCLSMLET--ADVEVKREMEGARGEVRVMTVHGAKGLEAPVVILPDTTAKAKAQ 822 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + E L+ P + ++ S ++ + ++ + Sbjct: 823 GPTLMPVELDDGAEGWLMC--------------PGSEKEDCEASGEARTARQTRVDDETL 868 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 A R +I R ++ + W L Sbjct: 869 RLLYVALTRA-RDRVVILGRGSAKSKLGYDEGSWWAVLTETFERLGGQVRDIGDGRRRFG 927 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + P S + ++ A +R+ + Sbjct: 928 VDPVVMAAGVASAIPGVTVPDWARAMPPVDPSA--RYVSPSQAKAVKRVSAPSPLAVAGA 985 Query: 802 DPDRTD----RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 D RG L H ++ L + ++ + D+ Sbjct: 986 DGGAPLGRFRRGDLIHLLLERLPEIEAAARPDAPRRMLAR-------------ERDLSEA 1032 Query: 858 HLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMAIESI--GIHLTGFADRIDLLKSGFV 913 I+ +F E+ S + + + G+ ++G DR+ + V Sbjct: 1033 QRDEMIAAAFAVLEDARFSAVFGAGSRAEVALTGSAPGLPAGVSISGRIDRLVVTPE-RV 1091 Query: 914 DITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946 + DYKT A Q+++ A LK Sbjct: 1092 LVVDYKTNRPAPDRIEDADPAYVAQMAVYVAVLKR 1126 >gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797] gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797] Length = 1171 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 88/933 (9%), Positives = 248/933 (26%), Gaps = 97/933 (10%) Query: 81 LGDVVEEKFTADLLLSYNLNPPVSN-IQRLL-----ELARLILIWRNKLPDIIKDL--YP 132 L ++ E T LL N + P + +++ + LI +++ L + Sbjct: 215 LAEIAESDATLHLLRLMNSHEPSNPKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHA 274 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIET------EEKKWEDLHALKNEKYGMWWLLAAD 186 + + + + + + D + E + L ++ + L ++ Sbjct: 275 KIQGGGTKKDWDDVSIYEQIRDGFKELRETLKPVYETLSPDPAGFLAAAEFSLVVLRVSE 334 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATAR 244 + + L+ + L R + A +++ + P + Sbjct: 335 YAAKCYQESKAEKGLLDFDDLLLQTRDLFRRDPNARQRAAAGIHYLMVDEFQDTDPVQSE 394 Query: 245 LMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 ++ + + D + + + S Sbjct: 395 IVRALCGKELLTGKLFLVGDAKQSIYRFRRADPEVFHQLRQEIPEKGRLPLSTNFRSQPA 454 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + +++ + + P + + I Sbjct: 455 ILNFTNCLFASAMAHYYESLTPFDQQQHSPTPGIEFLFASPDDPDIKLADAI-------- 506 Query: 364 ADNEREEAISIAIALRMSLDEN--------------------KKKSALITADRNLARRVK 403 EA IA +R L++ ++ + + Sbjct: 507 ---RETEADWIAARIRQLLEDETPRIWSKNPQSGERELRRVEPGDICILFRSLSSVSLYE 563 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L ++ + G L++L + +D +++ L++ P Y Sbjct: 564 KALQEHNLDYYLVGGRAFYAQQEIYDLSNLCQYLDSSDDELSLLGLLRSPFFSLSDDTIY 623 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 E + D + + R A + +++ + L Sbjct: 624 --AITRHAESLTAAMQVAPPDHVRPEQKRQVRYAQAV----LQELRTKKDRLSLVELLNL 677 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 L+ + + + D +++ + EE + Sbjct: 678 ALERTGYDAALLNEFLGDRKLANLRKLIELARNFEASGLFTLKDFVQRIRDSILEESKEE 737 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L++ + + + + + ++ ++ + + L + Sbjct: 738 LAATLPETSDVIRLMTIHQSKGLEFPVVIVADMDRRSQGASKDPFLHPEWGALLNLPAER 797 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE-KYIGQAA-HDFEMANGTRHL-IYT 700 + + +N ++ T Y+ +A ++ + + + + Sbjct: 798 GVTPENFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLILSAGLPYDRRVQSPWMKLLS 857 Query: 701 RSLRENNIPTIASRWLQRLLV----LGGTDFFDNLKKRGQCYLDWTR---KLDYTTKQPH 753 R + +L + R Q + +L + Sbjct: 858 RHFDLSTGLPTLDPYLGHFTMGNVQQDQIPEIRVHLNRPQTATKPAKKIKELKPSQFWAA 917 Query: 754 YKRPKPF---------PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 ++ P P + + +S S ++ + + +L D + Sbjct: 918 LEQGSPGGYPETFTVFAPQKNRQSHFSVSHLEVADALIQELPEPQYQRLSTADLLNAD-E 976 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQII---DSHFEKENLPPHIDIIWRHLFH 861 T GTL H++I L + PE + + +++ + L P I Sbjct: 977 ATQLGTLTHSVIERL-----DPLKPEQSDRIVELVLFDQPQVAGDKLKPLIQ-------Q 1024 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-----IHLTGFADRIDLLKSGFVDIT 916 +I+ + + + + + + + + +TG D + + Sbjct: 1025 QIAAWYESEICSALKAARVHYRELEFLLRLPATSDKESAVTVTGMIDAVYQTDDQRWVVL 1084 Query: 917 DYKTGDNPKKETAQKL---IDPQLSLEAAALKA 946 DYKTG + ++L + QL + A++ Sbjct: 1085 DYKTGARLAQLADEELISEYEFQLGVYTLAVEQ 1117 Score = 42.2 bits (97), Expect = 0.52, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 84/297 (28%), Gaps = 37/297 (12%) Query: 37 DPLNPLLLASVTIYVPTKRAIQELRSEFIE-----------------ITGKKSTILPIIK 79 P L+ + T+RA +E+R E + I Sbjct: 46 PGAPPDRLSHIVAITFTERAAREMRDRIRETCLDQLKNCPPEEVNHWQAVIRGLDSARIS 105 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 ++ + + + L+P +++ L + + +++K + + Sbjct: 106 TIHSFCTSILRSHAVSA-RLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVY 164 Query: 140 I-SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 L +L + ++++ L E+ DF + Y + Sbjct: 165 RFGLEKTYELLISLVP-----QQFRLEFDEFRELTPEQLAG---RMRDFWE--QNYIPMQ 214 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIAGSTGSIPATARLMSTVA 250 L E+ S + + LM + K + P +I G+ + A Sbjct: 215 LAEIAESDATLHLLRLMNSHEPSNPKLRQRFQTLKSRIPELIDGAPQMRGELLGTLIDHA 274 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 G D I I + E + T S P LA L + R Sbjct: 275 KIQGGGTKKDWDDVSIYEQIRDGFKELRETLKPVYETLSPDPAGFLAAAEFSLVVLR 331 >gi|304390837|ref|ZP_07372789.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325720|gb|EFL92966.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1164 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 114/1033 (11%), Positives = 241/1033 (23%), Gaps = 115/1033 (11%) Query: 45 ASVTIYVPTKRAIQELRSE---FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + P A + L + +L S G V E + P Sbjct: 71 PRMLVLSPNAGAARRLSERALEIRAKSEDPGCLL--GVSKGFVAEVFARFNQWRKTEGLP 128 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V + ++ + E+ + D + Sbjct: 129 EVRLATDAEVMVQIQDFLAEMPLEEELRAALETQGFRRDLVDGIFRVRAFAGDALSDSAA 188 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 +K + + W L + ++A A Sbjct: 189 SPVHPLVTRLIKAMQSDREAKRSQAR----QSAWPLDTASL-----FEEYLLAVKAGA-- 237 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + I ++S A +G ++ + T + Sbjct: 238 ---PVPELVGIDDLQNFNGLMIDILSLWA--THGTTLVACTLPETCVNTFRGATPHLSER 292 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 ++ L K L R V S +++ + Sbjct: 293 LWQQLETIPG-----KGAIEILLTKEHVPAPLRQAWRIAVNRLGVHGISARLWNSAQESS 347 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK-----SALITADR 396 E + L+E + + I L+ + + + A++T Sbjct: 348 PASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLTRSS 407 Query: 397 NLARRVKLELTRFGINIDISAGIP-LSTTLHSSILTSLLNAIFK------LNDFMAIATL 449 AR+V L I + + L+ + L ++ A+ + +A L Sbjct: 408 REARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDLAGL 467 Query: 450 VKHPLAKFG-------FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L + Y R + + G+ D D I N Sbjct: 468 LSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIVGNL 527 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 ++ + ++ + + V I+ + + +V L Sbjct: 528 PYIQQFLRQVISGQNDFSGRSVPEIISALPDAAQLVDLAQALQSGWQQWKADSGSVQLLL 587 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL---------- 612 D + L L ++ + + + D Sbjct: 588 WKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAADFA 647 Query: 613 -------IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + TV P + ++ + ++ + + GL +G WP L Sbjct: 648 QGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGSILG 707 Query: 666 RVM--QSDLNLKTAEKYIGQ-------AAHDFEMANGTRHLIY--TRSLRENNIPTIASR 714 M + T G H F + T + T + Sbjct: 708 SSMFELENYGDPTNSSSAGYLWNWQNEYRHFFTALTRCTQRLILGTTAQDGVGRSTFLTS 767 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD------YTTKQPHYKR-----------P 757 +Q L + R L T P Sbjct: 768 LVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPIAAGLLAKLAAGDCP 827 Query: 758 KPFPPLEAQPRTYS------------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 P S S +++ + +P + Sbjct: 828 SAHPENWIGALPVSGDETESAEIRIYASGLERALENPLDYVLSWS---GYSNDEDDPYAA 884 Query: 806 TDRGTLFHNIIT----ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 G + H + + + + P + F Sbjct: 885 NKVGNIVHEAAEILGRRYWWEGHGPRDDLEFEQVLTELRQEVRRLLGPLSGETWVESNFR 944 Query: 862 KISHSFLEHEEKIQSSIE-KIFVNIPAKMAIES----IGIHLTGFADRIDLLKSGFVDIT 916 + + L + + + +E+ + DR+ + G V I Sbjct: 945 RHIETCLVPLATFLVNHQYPSRFEVRYPCRLEASSGKGALVYNARIDRV-MFAHGRVIIM 1003 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 DYKTG+ A+ + QL+L AA A Q +A + +++ K T Sbjct: 1004 DYKTGNPSNFSAAKVAANLQLALYQAAYNASPDGQKQPCDMAEIVALQVPPDSKKLYSTQ 1063 Query: 977 DKKKYSADELSEK 989 ++ ++ + Sbjct: 1064 GIEEPREPKVWAQ 1076 >gi|153213950|ref|ZP_01949146.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 1587] gi|153828183|ref|ZP_01980850.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 623-39] gi|124115603|gb|EAY34423.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 1587] gi|148876272|gb|EDL74407.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae 623-39] Length = 1148 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 113/985 (11%), Positives = 241/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLVSGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGISAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLDDE-EIDLRLQPFDDGREVLLRG 976 >gi|148828119|ref|YP_001292872.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae PittGG] gi|148719361|gb|ABR00489.1| hypothetical protein CGSHiGG_08275 [Haemophilus influenzae PittGG] Length = 1126 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 116/981 (11%), Positives = 249/981 (25%), Gaps = 138/981 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNITKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSVLHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E I N ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737 E R + R +N P S + +LL +N+ + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 W + T + + + + + + Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTETLEKIEEIEVDSLVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839 P + + L + F ++ D ++ ++ +L +Q Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890 Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893 +F + + + I + LE ++KI E ++ ++++ + Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKKKIADLGEAKHASVDFNLSVDWQNEN 950 Query: 894 IGIHLTGFADRIDLLKSGFVD 914 I L G+ D + S + Sbjct: 951 QKIRLFGYMDALFGDDSQVIH 971 >gi|153801062|ref|ZP_01955648.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-3] gi|124123416|gb|EAY42159.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae MZO-3] Length = 1148 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 115/985 (11%), Positives = 247/985 (25%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLL 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLN 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENKI- 349 LL + D L +++ + S L +D+ + ++ Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 350 -------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P I + + + E + L + + + ++ D N Sbjct: 360 FASSCHKPCIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|229524318|ref|ZP_04413723.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae bv. albensis VL426] gi|229337899|gb|EEO02916.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae bv. albensis VL426] Length = 1148 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 114/985 (11%), Positives = 242/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDSSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107] Length = 1163 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 109/950 (11%), Positives = 239/950 (25%), Gaps = 109/950 (11%) Query: 58 QELRSEFIEITGKKSTILPIIKS-LGDVVEEKFTADLLLSYNLNPPVSN--IQRLLELAR 114 + LR + + L D E K LL PP + L L Sbjct: 238 RLLRRALSYHASDLCALADRAATNLQDEGERKNRIHELLGITHLPPTEPEALPHWLALVD 297 Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--- 171 L+ L + + + L + A I ++ + E L A Sbjct: 298 LL------LTNGGTYRARLTKSEGFPTGKAGAELKEQFAGFIAVLREQNPDLETLLADTR 351 Query: 172 -LKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHLMKG- 225 L Y + L L +L A+ A + A + Sbjct: 352 LLPPVAYAPEQWALLESLTQLLPQLAAELMLVFKQLAATDYSAISQAALLALGDEDEPTD 411 Query: 226 -------TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTIT 275 I++ + L+ + +G + D + Sbjct: 412 LALKLDYRIRHILVDEFQDTASPQLELLRKLTQGWQTGDGRTLFIVGDGMQSCYGFRNAN 471 Query: 276 EKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + + + + + Sbjct: 472 VGLFLDARQQGIGNVALEAVDLCVNFRSQAGVVDWVNQVFAKAFPAQDDIARGAVHYSPS 531 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVAL--------IEADNEREEAISIAIALRMSLDEN 385 + ++ I + L I+ +RE A +A+ + + Sbjct: 532 TAFKPLLANPAVQLHIAAYTSGDDEDDLQTGNTAGSIQQARQREAAQVVALVRQAKAENP 591 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + A++ R R + LT G+N + L+T + L +L A+ +D ++ Sbjct: 592 QGSIAILVRTRTHLREILPALTTAGLNYQATEIDRLATRMAILDLRTLTRALLDPSDRIS 651 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L++ P + + E N + Sbjct: 652 WLALLRAPWCGLTLNDMHALANTRLPESHTDNANDWPLLWPQILHHQQ------------ 699 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 + + L N + W + + Sbjct: 700 --------------ITSISADGHTRLEKLRQVLANAWENRLRKPLRQWIEG-----VWLA 740 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 L L + + ++ +L K G + A + + PK + Sbjct: 741 LGGPACLVDANECDNVQSYLTLLDKHENAGRILDWQA------FNQALQQLFAAPKADAD 794 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS--DLNLKTAEKYIGQ 683 L ++ +S+ L FDT+I+ GL + + R+ + L + IG+ Sbjct: 795 PLLQVMTIHKSKGLEFDTVIIPGLERANRGDEKSLLLWQERINRQGERQLLLGSFAPIGK 854 Query: 684 AAHDFEMANGTR-------------HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 + ++ TR+++ + A + L + G Sbjct: 855 DKDPLYSFMRSEADKQQQFEATRLLYVGCTRAIKRLYLLGCAKQTEDGLQLSGKRSLLAC 914 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + + Q + + P P + Q ++ + I Sbjct: 915 IWPQVQDQCHLIEQEHQQQNLRTHPLPLLRLPSQWQAPPMDYTSPLASYRGR-DFRSDPI 973 Query: 791 LKLDFIPHFKKDPD--RTDRGTLFHNIITELIKKRINKNTPEINHL---MKQIIDSHFEK 845 +P + + G L H + + +++R+ +I+ + + +S + Sbjct: 974 ANPRNLPELENRRNRLARHTGILIHRALQDWVERRLLPGGEDIHAYCACLYPLWNSSLHQ 1033 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---SSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + L + + ++ G+ Sbjct: 1034 RGWARDEIDQSLEKITRALSTTLNDPHGQWLLNPDHLDSQCELAL-VEHDTQGVREH-II 1091 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-------QLSLEAAALK 945 DR + G I DYK+ + E+ + QL+ + Sbjct: 1092 DRTFIDG-GERWILDYKSSEPEGGESVAAFVARERELYQGQLARYRELMA 1140 >gi|145638236|ref|ZP_01793846.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittII] gi|145272565|gb|EDK12472.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittII] gi|309751391|gb|ADO81375.1| Exodeoxyribonuclease V, gamma chain [Haemophilus influenzae R2866] Length = 1126 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 121/982 (12%), Positives = 252/982 (25%), Gaps = 140/982 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITAQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195 Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292 + I + + + P Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDEDQPLFSEDQLSQLENAQFDVTYQK 315 Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347 Q L + + R+ + L + + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSPTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQSH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E I N ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737 E R + R +N S + +LL +N+ + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQAKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 W + T + + + + + + Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTENPEKIEEVEVDSLVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839 P + + L + F ++ D ++ ++ +L +Q Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890 Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893 +F + + + I + LE +EKI E +I +A++ + Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNEN 950 Query: 894 IGIHLTGFADRIDLLKSGFVDI 915 I L G+ D + I Sbjct: 951 QKIRLFGYMDALF--GDNSQVI 970 >gi|227892522|ref|ZP_04010327.1| ATP-dependent exonuclease subunit B [Lactobacillus ultunensis DSM 16047] gi|227865643|gb|EEJ73064.1| ATP-dependent exonuclease subunit B [Lactobacillus ultunensis DSM 16047] Length = 1160 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 80/707 (11%), Positives = 184/707 (26%), Gaps = 107/707 (15%) Query: 354 KCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARRVK-LELTRF 409 V L++AD+ EA +A + ++ D L + Sbjct: 295 DELDQVQLVKADSRYAEAYFVARTIYQQVALGKFRYHDFLVLAPDLKEYETYLIPILRQH 354 Query: 410 GINIDISAGIPLSTTLHSSILTSLL---NAIFKLNDFMAIATLVKHPLA--KFGFPEKYL 464 I + ++ SL + + ++K L + E Sbjct: 355 HIPFFNDLQQEMKYHPLVVLIESLFNLRDLKDNPFQTSNMLAILKTHLLIPSWYKEEAEY 414 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + LE L N + + + + + + V V Sbjct: 415 IHDVDELENFVLAHGINHGLW---RKSFSHFVDAEVIRLDKMDEEVAKIDRLRGYLVDKV 471 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + + L+ + + E+ L Sbjct: 472 TTLFESLGGEEDSQKALTIFFDFLTQNGVAAKLEQWRDAANEAGDLQQAQQ-PEQLWDLL 530 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L + K + E+ +++ + + + ++ + Sbjct: 531 IQLLKDYLTINPE-KFDLEEFFNMLINAFKEANFSQIPSTLDAVNLSEMGMVQTSGYEQV 589 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLN--------LKTAEKYIGQAAHD---FEMANG 693 + G G P FL+ + L L+ ++ + ++ Sbjct: 590 FIIGATSGNLPAIQKMPGFLTTENLNQLQTSFDSDSYLEDNQQLNNLDQNYQFGLSLSLA 649 Query: 694 TRHLIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFD-NLKKRGQCYLD----------- 740 + + + + + ++ S + +RL G +F+ +L ++ Q L Sbjct: 650 QKKVYVSYPVLNASNESLDPSIYYKRLESYGAHEFWQHDLPEKMQDLLSFITNPDSSLGY 709 Query: 741 ------------WTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-----------------S 771 L+ T K K + + S Sbjct: 710 LAYMNSINSSKTIDELLEITQKALPQKTDDILKASQFDNQPEDIGQDLASQLYGQNLNSS 769 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 S+++ + Y + LKL F+ + D G FH L+K+ ++ Sbjct: 770 VSQLETFYENSYEYFLTYGLKLRKR--FENEFDVIQAGNYFHETFDRLVKQLNKRHLDLA 827 Query: 832 ------NHLMKQIIDSHFEKENLPPH-----IDIIWRHLFH----KISHSFLEHEEKIQS 876 M + + E + K++H++ + K + Sbjct: 828 DLNSVELEQMLNSVRDVMKDEGKYAQLMNDPFNQYLFKCLDHTTSKVAHNWRKSLTK--T 885 Query: 877 SIEKIFVNIPAKM---------AIESIG----IHLTGFADRIDL---LKSGFVD--ITDY 918 + + + + + + + L G DR+DL + V + DY Sbjct: 886 PLRAKYSELSFGIGEKIKGLSFEVPDLSGVHKVDLRGKMDRVDLANFTDNSQVLAQVIDY 945 Query: 919 KTGDNP-KKETAQKLIDPQLSLEAAALKAGS--FSQIDCRKVANLFY 962 K+ I Q+ L F+ + + FY Sbjct: 946 KSSAKKFDLGMFYNGIALQMVSYLDVLIKNGQFFAGDEQLSLLGAFY 992 >gi|261492785|ref|ZP_05989333.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311638|gb|EEY12793.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1096 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 98/967 (10%), Positives = 235/967 (24%), Gaps = 131/967 (13%) Query: 21 MIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKS 80 + L+ V DP P TI + ++ Q L+ + E+ G Sbjct: 13 LAEMLVKIQQVNPLE-DPFEPE-----TILIQSQGMAQWLQMQIAELNG----------V 56 Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 +G+ T L Y L P + + E + L+ LP + Sbjct: 57 MGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSCLTLSEFAPLKRYLG 116 Query: 141 S-------PANAIWLAKNLADIIDIIETEE----KKWE---------------------- 167 L+ +A++ D WE Sbjct: 117 DQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQAIENEIKIATAAKPIDF 176 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 DL + W L+ S + + + A + E Sbjct: 177 DLIRADMKWQSHLWQQIVSDLQSESD--EQVFTTSHRAYLQQNYFAKLDDLTETEKAKLP 234 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP-----TAIWNTITEKSTNIT 282 I I G + P + ++ H + + +W + ++ Sbjct: 235 KRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGDSVEEKVWQKL--ALSHKI 292 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 S + + + L + R+ + +L + ++ + Sbjct: 293 SQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVFVEPEENSNLNKLKKQIFS 352 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + I ++ + + + + E + L +++ K +++ D N Sbjct: 353 LENDATITDLT-ADNSLQIHSCHSPMREVEVLHNQLLNLFEQDSTLLPKDIIVMSPDINK 411 Query: 399 ARRVKLEL---------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 + I +S LL + + L Sbjct: 412 YAPYIDAVFSRYNTGNREPRYIPFSLSDQAFTQVDPIIHSFLQLLAMKESPFNAEELFDL 471 Query: 450 VK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 ++ F + + R V + S ++ Sbjct: 472 LEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQPHWQNYNSWENGLNRLLLGSSLK 531 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + L ++ + + N ++ W + Sbjct: 532 EEQGIWENTLAFGDSYGLNAELVGRLASFIEALLAWVNFLQTPQPLAAWQQAIKNL---- 587 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 N L+++ +IIE S + I+++ L + + + + Sbjct: 588 --TADLYQENAENAASILLLNNVNDQIIEQISATHFSDDLQIEVLALLFEQQLSQHSQQL 645 Query: 625 S---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + L R + F + L G+NE +P+ N F + Sbjct: 646 NFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQQINSFDLMQYAPKKGDRAKRDDD 705 Query: 682 GQAAHDFEMANGTRHL-IYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 E + + + +++ + S + +LL K Q Sbjct: 706 RY--LFLEALLSAQQMFYISYIGQSQKDGKEMLPSILVSQLLDAMNEALTPECK---QQL 760 Query: 739 LDWTRKLDYTT-------------------------KQPHYKRPKPFPPLEAQPRTYSFS 773 D L + P + Sbjct: 761 SDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPTVAVQDFLSEPLTNESVASLELD 820 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 E+ + +P + ++L + + D ++ + ++ + + N + Sbjct: 821 ELISFVQNPIRFFFLKVLGIS-FNTYDDTIDESEIFEMSGLDNYRILNELLTINLAQQQR 879 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIP 886 + + + I +L E +I S ++ + Sbjct: 880 FF---AEEQLKGNLPASYFAQIATQDLIGKITEMQAALSHYLASESRILSVNREVELE-R 935 Query: 887 AKMAIES 893 + + Sbjct: 936 QTLTLNG 942 >gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] Length = 1072 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 80/797 (10%), Positives = 186/797 (23%), Gaps = 88/797 (11%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + + P G+ V F Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAIDPDNPPGEPVISTYHAFA 116 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 117 GRLLTDHGLRVGLEPTSRLLADATRYQLAARVLREA--------PGLYPALTRSFPDLVG 168 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195 +L + + + EDL E A L + Sbjct: 169 DLLTLDAELAEHLVRPEDLRDHDAELLRTLENTRLTNADLRKVPEAAAARRELADLVLRY 228 Query: 196 TERLVELNASSPVGY----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E + E +++ +++ + A L++ + Sbjct: 229 RAAKRERDLLDFGDQIALSARLAALPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFG 288 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G V D W + + + + ++ + L Sbjct: 289 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRTATRQSL------------ 336 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 S ++ + + + + + + V EE Sbjct: 337 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGTVRCALLATHAEEI 391 Query: 372 ISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 IA ++ ++ K A++ ++ L + +++ L + Sbjct: 392 DWIADSIAHLVNTGKAPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEIAD 451 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L ++ + ++ L+ P + G + L + + R + + L Sbjct: 452 LVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARRLVTHARVDGDDDPDRRLA 511 Query: 490 SLVLDRIATQK---NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 V + + ++ + + + L T + + Sbjct: 512 EAVEGVDPAEVISLADALDTFLETPMDGRRDDDGLPFSPDARVRFARLATELRDLRRSLA 571 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + ++ V L E + + A Sbjct: 572 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGF 631 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN---------------- 650 + +T+ +L +S+ L +D + + GL Sbjct: 632 LRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQ 691 Query: 651 --------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY--- 699 G + + SR +++ ++ + + R L+ Sbjct: 692 GKVLPHALRGDADTLPDVDSWDSRGLKAFHEAMKEHQHTEELRLGYVTFTRPRSLLLGSG 751 Query: 700 TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 P S +L L G + + + + R D Sbjct: 752 HWWGPSQKKPRGPSAFLHALYRHCAAGYGEIEAWADEPAEDEENPALHRATDDQVWPLAL 811 Query: 755 KRPKPFPPLEAQPRTYS 771 A + Sbjct: 812 DDAALARRRAAADTVLA 828 >gi|254286014|ref|ZP_04960975.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae AM-19226] gi|150423924|gb|EDN15864.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio cholerae AM-19226] Length = 1148 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 114/985 (11%), Positives = 244/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA-- 297 L H I + + Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVSPLKGDVENYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + P+I + + + E + L + + + ++ D N Sbjct: 360 FAISSHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + L + R + + Sbjct: 773 LESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter winogradskyi Nb-255] Length = 1202 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 87/849 (10%), Positives = 201/849 (23%), Gaps = 109/849 (12%) Query: 194 YWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAGSTGSIPATARLM 246 ++ E +R + + + ++I + + P ++ Sbjct: 360 HYRREKHERGLLDYDDLIDKTLRMLEQTSPGWVHYKLDRGVDHVLIDEAQDTSPKQWDIV 419 Query: 247 STV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------- 289 + A V D + + + Sbjct: 420 ERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERRRKLERKFTDAKLPF 479 Query: 290 --THPQYSLAKLLDFLDIKREDVK--RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL 345 YS L+ + + + + + S + P D+ + + Sbjct: 480 RKEDFIYSFRSGKTILESVDHVFRDPAIYASIHAVGAHPVHESLADAAPGIVDLWSLEER 539 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------------NKKKSAL 391 + + A+ E + A I ++ + + L Sbjct: 540 DKREEMEGWRAPFDAVTATSPEVKLARRIRDEIKSLIAQGAMTGHLGNRRPLGYGDILVL 599 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + N V L + GI + + + L+ + L +L +A+ D +A+A +K Sbjct: 600 VRRRGNAFDAVIQALKQSGIPVAGADRLKLTEHIAIIDLMNLADALLLPRDDLALAVALK 659 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 PL + + + L +L A K + Sbjct: 660 SPLFGLDDDDLFKLAWQRKGTLR--------------DALAGHATADDKFRDAFESLKRC 705 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 S ++ +L + N ++ ++ +L +TC + Sbjct: 706 ESRAARDTPFAFFAWLLG-EEAGRRRILRRLGHEANDALDEFLELALTCERKAPASLQGF 764 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + W + + + + + ++ + + P + +L + Sbjct: 765 MA--WLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTSTSPADTERLSLIRM 822 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM- 690 G + I G P ++ + + A Sbjct: 823 GRGNAPAGVAGVTIWAGRKAEDPPCVAQARAAMTAETEHEYRRLLYVAMTRAADRLIVGG 882 Query: 691 ---ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------------------- 724 AN ++ + +Q + G Sbjct: 883 CKPANRKDVREFSWYHLIEKGLANSGLAMQEIETASGKVKRFTRPDHDDPGSNRSRIMNV 942 Query: 725 --------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 L L+ P P + Sbjct: 943 IDSNILERDAGGKPLHTFPHPALEEAEPDAAGPAPPASPGATRIPLPPWLHLAAAPEAPA 1002 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 + P + + RGTL H ++ L + ++ + Sbjct: 1003 RRSLYPSDADEAAHQRAPAGAIPDQRHRARLRGTLVHRLLQSLPEVPRDRRREAALSYLG 1062 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI-ESIG 895 + + E+ ++ + + F E + V I ++ Sbjct: 1063 RNASGWGKTEHDALAARVVAVLDDARFAPVFAE--------GSRAEVAIVGRLTTRRGDP 1114 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + ++G DR+ + G V + DYKT P QL+L A L Sbjct: 1115 LPVSGQIDRLVVTPHG-VLVVDYKTSPAPASLADVPPAYIRQLALYRAMLAGL----YPE 1169 Query: 955 RKVANLFYI 963 V Sbjct: 1170 LPVNAALLW 1178 >gi|261211433|ref|ZP_05925721.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC341] gi|260839388|gb|EEX66014.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC341] Length = 1148 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 114/985 (11%), Positives = 245/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKIALARELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W + Y Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNIT-------------------SSNTTYSTHPQYSLA-- 297 L H I + ++ Q SL Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKILQINGEQVTIGSEVSPLKGDVESYLQESLHLS 299 Query: 298 -----KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAEQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++ + G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFDNL 731 + + + L + R +N + S + LL + D Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEN 772 Query: 732 KKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PFPP 762 + + L + R + + Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|56414943|ref|YP_152018.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363871|ref|YP_002143508.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129200|gb|AAV78706.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095348|emb|CAR60906.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1123 Score = 106 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 102/941 (10%), Positives = 238/941 (25%), Gaps = 113/941 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MILVQSTGIAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ +K ++ L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQLLDKDEFVLLH----HYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P + + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLKALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ P Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A F +M + Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAPLGF--DLMSQKTMRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGG---------------- 724 E + L + R +N S +Q L+ G Sbjct: 713 RYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDES 772 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRTY 770 R + + + +Q Y R P P T Sbjct: 773 EARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPETL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKN 827 + +++ P + + L+++F + PD G + + +L+ + ++ Sbjct: 833 TLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEED 892 Query: 828 TPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 E + + + E + L ++ Sbjct: 893 DTERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1146 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 124/1098 (11%), Positives = 251/1098 (22%), Gaps = 184/1098 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS- 104 V T++A EL + + D S ++ P+ Sbjct: 69 QVLGLTFTRKATAELDQRVASRLTG--LGAAGMLPATAPDGAETGGDTADSTDVGEPMIA 126 Query: 105 -----------------NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + L W+ + P SL + + A+ Sbjct: 127 TYNSFAGSLVRDHGLRIGVDPDSTLITQARSWQIVTSLLEARTLPLPSESLIHNASAALV 186 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIAS 192 L+ L+ + ++ DL W D + Sbjct: 187 LSDALSQNLLSLDEAATDLADLTEQFTALAAIKGCKTLVGKAPAVMSEWEALLDVVAEL- 245 Query: 193 KYWTERLVELNASSPVGYQIALMRA--EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + R L+ + A+ + EA ++ +++ + A RL+S + Sbjct: 246 QGYKRRHGLLDFGDQIALACAIAESVPEAAAQVRSQYPAVLLDEFQDTSVAQVRLLSALF 305 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT---TYSTHPQYSLAKLLDFLDIKR 307 V D H W + + + S P A +LD R Sbjct: 306 ADSG---VTAVGDPHQAIYGWRGASAGALDTFHQRFNPTGSSGTPPADAAPVLDLSTSWR 362 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 D L + + + P + ++ V + Sbjct: 363 NDSTILEVANAVSEPLRSGVVQDGDPMGEHIAVAPLRARSVSFGLE--PGAVHGAFLQDP 420 Query: 368 REEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 EEA ++A L + A++ R + EL G+ I + Sbjct: 421 VEEARTVAAFLAERWSP-GAEMAVLCRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPEV 479 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + + +LL A + L+ + L+ + ++N + Sbjct: 480 ADVRALLTAASDPERGDRVVRLLTG-FGIGAGDLRALATLAREVINPTPEPSRNGTEGRA 538 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + ++ +T + + + + ++ L + Sbjct: 539 SQDEADSPLLSEALDTLLRWDEEGVDQPVPDVVHDLTAAGR-AVALRTARAIRCVREAIA 597 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 L + D L L R + + + +T + +EW+D Sbjct: 598 LPLPDLVTLAEQVLDLDIEIAARVGDPMGHRALDSFQETALTFAADTDAATLTGFLEWLD 657 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP------------ 655 D T + +L ++ L +D + + G++E V+P Sbjct: 658 AAEEQEDAMTAPEVDTSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSSVKEDLRV 717 Query: 656 --------------------------------KNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 P L+ M + + + Sbjct: 718 VETGWMGSTSTFPFPLRADADDLPPFTVGDLDPAVTDKPLLTETMNAYKEALGRQSLREE 777 Query: 684 AAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLG-----GTDFFDNLKKRG 735 + RH + + + + P SR+L L G + D R Sbjct: 778 RRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELRRRDLLATYGDGWVDFDDSRP 837 Query: 736 QCYLDWTRKLDYTTKQPHYKRP-------------------------------------- 757 T+ + + P Sbjct: 838 NPLTALTQVGTWPLDADEPEAPGTGTPGTRGAHGDEETLTDRAGGLRRARWAAAAQVAAA 897 Query: 758 -KPFPPLEAQPRTYSFSEIKQLINDP--YAVYARRILKLDFIPHFKKDPD--------RT 806 P E S +D L L Sbjct: 898 MSDTRPTEPASAEPSAPAQVAQTSDETLQRWQLEAGLLLAERARATTATSTVRLPEHLAA 957 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHL------MKQIIDSH---------FEKENLPPH 851 R PE + + +P + Sbjct: 958 TRLDDLRADRQRFALDLRRPLPPEPRAAGRLGTVFHDAVAQRLSARGTLFSLGEAGVPDN 1017 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS- 910 +D R + + + ++ + + L D + Sbjct: 1018 LDPQDRARVERWLDT--AENLSLLDDYVLAETETDREITVGAT--TLRCRMDAVFRRVDR 1073 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQK 968 I D+KTG QLS+ A A G Y+ + Sbjct: 1074 AGWLIVDWKTGRRQVPVD-------QLSVYVHAWAASQGV-----PVGSVRAVYVYVDYP 1121 Query: 969 FKIDCITNDKKKYSADEL 986 D S D++ Sbjct: 1122 GGRVDELTDADLLSLDQI 1139 >gi|300858460|ref|YP_003783443.1| hypothetical protein cpfrc_01043 [Corynebacterium pseudotuberculosis FRC41] gi|300685914|gb|ADK28836.1| hypothetical protein cpfrc_01043 [Corynebacterium pseudotuberculosis FRC41] gi|302206173|gb|ADL10515.1| RecB family exonuclease [Corynebacterium pseudotuberculosis C231] gi|302330730|gb|ADL20924.1| RecB family exonuclease [Corynebacterium pseudotuberculosis 1002] gi|308276413|gb|ADO26312.1| RecB family exonuclease [Corynebacterium pseudotuberculosis I19] Length = 303 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 87/268 (32%), Gaps = 27/268 (10%) Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + +P + S S P R I KL +GTL H Sbjct: 28 TQSQPPKEAAPKRLALSPSRANDYQQCPLLYRFRAIDKLPEPKTV-----AQVKGTLVHA 82 Query: 815 IITELIKKRINKNT-PEINHLMKQII-----DSHFEKENLPPHIDIIWRHLFHKISHSFL 868 ++ E+ + + P +K + +E +P + + + Sbjct: 83 VLEEMHEWPREQRLYPAAVKRLKPQWAKMCSEDSELEELVPEDKTYDFLVECRSLLRGY- 141 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 E + + + + G+ + GF DR+D+ +G V + DYKTG P Sbjct: 142 -FEMENPQGFDAHECEMYISAELP-NGVPVRGFIDRVDIAPTGEVRVVDYKTGKKPIPRF 199 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 +Q+ I Q+ A + +I + L Y+++ + + E Sbjct: 200 SQQAI-FQMRFYALVYWR-LYGKIPDQ--LRLMYLKVTDSMFLMPSKEE---------LE 246 Query: 989 KSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 ++L E+ + + + S+ Sbjct: 247 YFERDLGELWQKILDDAAAGSFRPKTSK 274 >gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG] Length = 1171 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 64/604 (10%), Positives = 142/604 (23%), Gaps = 49/604 (8%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F LL + L + RLL A + L + P P Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190 L +L + + L + A L Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRKVPEAAAARLALTE 222 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245 + + + R EH + +++ + A L Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 +S + G V D W + + + + + L Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 S +++ + + + P + V Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLP 385 Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423 EE +A ++ + A++ R++ L I +++ L Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L ++ + ++ L+ P + G + L + L A + Sbjct: 446 LPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + V + + D E + + L Sbjct: 504 PDRRLAAAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSAGARARLARLGRELRELRR 563 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ +V L E + + T A Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +T+ +L +++ L +D + + GL +P + + F Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVVKQFPSDRGREKF 683 Query: 664 LSRV 667 +R Sbjct: 684 TARA 687 Score = 58.4 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 80/776 (10%), Positives = 175/776 (22%), Gaps = 50/776 (6%) Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 G I A IP +S + + P A + + ++ T Sbjct: 416 RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGP 475 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 A+LL +D R + E + ++S + + Sbjct: 476 RWRIGARDLALLGRRARLLAGGRSGEDDPDRRLAAAVEGVDPAEIVSLADAVDTFVEGGP 535 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401 + E + AL L + + +T Sbjct: 536 DAEDGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 L ++ + SLL + L + + L Sbjct: 589 SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 K L+ K + + L ++ T D Sbjct: 649 KVLTAHKAKGLEW------DVVAVPGLVVKQFPSDRGREKFTARASVLPHPLRGDAATLP 702 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + + +T + L + Sbjct: 703 DVAEWTAKGLKAFQDGMRAHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 T A D L + + + + + Sbjct: 763 LTALHDHCVRGHGEIERWAEPPGPEDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----ANGTRH 696 +L + ++P+ + G A D G Sbjct: 823 HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYEEEPDPYEGGPD 882 Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 P + D + + W R LD + +R Sbjct: 883 AYSGGPDPYEGGPDPYGSDAAPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRR 940 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P + + +++ +L DP + + P + RG FH + Sbjct: 941 AAASVREVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWL 995 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + + + E + ++ +F + Sbjct: 996 ERRLTAGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRP 1046 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933 + V +P ++++ + G D + D +I D+KTG + Sbjct: 1047 AHR---VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGR-----DRTRAD 1096 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 QL++ A ID ++A ++ ++ + + +E+ Sbjct: 1097 PLQLAVYRLAWAE--RHGIDPEEIA-ATFVFVRTGEAVRPGRLPGRAELERLFAEE 1149 >gi|197116745|ref|YP_002137172.1| exodeoxyribonuclease V subunit gamma [Geobacter bemidjiensis Bem] gi|197086105|gb|ACH37376.1| exodeoxyribonuclease V, gamma subunit [Geobacter bemidjiensis Bem] Length = 1074 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 84/877 (9%), Positives = 207/877 (23%), Gaps = 84/877 (9%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 L++ P + V K + L E G + GD Sbjct: 14 LVDELERVVRAPRPAPCTPFDKELVVVQNKGMQRWLSMELATRIGVWAN--------GDF 65 Query: 85 VEEKFTADLLLSYNLN--PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + + +Y L P + + + IL + L+ Sbjct: 66 LFPNKFVEEVFAYVLPESPADAPLFAPEVMTWRILELLQQSAGRAGFEEVAGYLADDGDG 125 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + LA+ ++D D ++L + + W + W Sbjct: 126 LKRMQLARRISDTFDRYTIYR--PKELLRWEQGEE-EHWQA---------QLWRALNDRA 173 Query: 203 NASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 ++ L+ + I + G P +++ VA H + L Sbjct: 174 GQ----KHRARLLHDFLASRKNDRSWRRRISVIGIPSLPPFHLDVLAKVAEHAEVNLFLL 229 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 I + + + + L + + R+ K + + + Sbjct: 230 NPCRQYWGEIVS--ERELARLEKHGQGEEQWYETGNPLLASWGKLGRDFFKAIIDDCGDH 287 Query: 321 YGRSMVISK---SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 L +D+ E +Q + + + E + Sbjct: 288 EREDSFYELPQGVLLHEVQADIVELRGAEAGPRQVQAGDLSLKIHSCHSPMREVEVLYDT 347 Query: 378 LRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLHS 427 L D + + ++T D + R I I+ + + Sbjct: 348 LLSLFDADPLLSPRDVLVMTPDIEAYAPYISAVFDNPEEDRKRIPYSIADRSLKNEGEAA 407 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSRAKNALELVALRGNKNSY 483 L ++L + +++ P F + R + + + Sbjct: 408 RALVAILGLCGGRYGVATVLDILESPPVARRFGLSGDDLENVRDWLRGANIRWGIDASQR 467 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLVT 536 + + A + + + + + D + +T Sbjct: 468 AEHGVPPFSENSWAAGLDRLLLGYAMNGDGRSFYNGILPYDDMEGGVALSFGRFLTFCEK 527 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S+W L + L + ++ + Sbjct: 528 LFAQTGALSRPRVPSEWVPALRQILDDFILPDQEGEREFL---LLIEMAKKLGEFPAAAG 584 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + IE + G + + + + L R + F + L G+NEG +P+ Sbjct: 585 FEEEIGIEVVRYWVEQQLGASKRDLGFLTGNVTFCAMLPMRSIPFPVVALLGMNEGEFPR 644 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASR 714 F + + + + + L + + +N S Sbjct: 645 RNPPQGFDLMTREPRSGDSSPRDEDRYL-FLEALLSARKRLHISYVGQSIKDNAELPPSV 703 Query: 715 WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + LL F +P + + + S Sbjct: 704 LVSELLDYLERAFV------------------TPEGKPAAEVARHPLQPFSLQYFNRDSA 745 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTPEIN 832 + ++ F P + GT+ + + + + Sbjct: 746 LFSYSQQNCEGAKAKLSSPTPREPFLDAPLPAWEEEGTVTLKTLIDFLCNPAKELLRRRL 805 Query: 833 HLMKQIIDSHFEKENLPP----HIDIIWRHLFHKISH 865 + + E+ + + + + Sbjct: 806 GIRIEQGVEPLEESEPFALDTLAKYQLEQEMVTALLR 842 >gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 768 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E++ ++ G ++ +P + + + + Sbjct: 68 SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + I W AK LA IID + Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + + + + A + +RL+ LNA + ++ +H Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + A + +A + D W + Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + + + R Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396 L + + V +I + EEA + LR + K A++ + Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R + + I G + L I + D +A +V P Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G L D + L ++ Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L I Q + L+ + + +S +D T+ + DE L Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511 Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + ++ + E ++ + +++ ++ ++D + ++ Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FD + L G EGV+P + + + L + E+ A A Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617 Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + R + SR++ L + L+K+ + D + Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKAPIWRDIWAEDRSKNPAY 676 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + PP + R + + Q + LK Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716 >gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] Length = 1155 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 63/718 (8%), Positives = 166/718 (23%), Gaps = 56/718 (7%) Query: 228 GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 +++ + +L+ + + +G + D + Sbjct: 420 RHLLVDEFQDTSQLQIKLLEGLTAGWSAEDGRTLFLVGDPMQSIYRFRKAEVALFAQVRE 479 Query: 285 NT--TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + S P + + + E R + + Sbjct: 480 QGLGSISVEPLQLEVNFRSNAGVVGWVNEAFEQLFPEQEDR--DLGAVPYHHSVPFHGAS 537 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARR 401 + + +Q EA + + + +N + A++ R Sbjct: 538 HGVAVQWHPVQGGLDG--------ALREAQQMVRIIEQTRQQNPQGSLAVLVRARPHLAA 589 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + L GI L L SL A+ + D +A L++ P + Sbjct: 590 LVPLLKAAGIPFQAVEIDALERRPVVQDLWSLSRALHQPADRIAWLALLRAPWCGLSPAQ 649 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + ++ + L+ + R+ L++ + Sbjct: 650 LVPLAEGQGSGTPLWQALQDKRRVEQLEPMAQGRLNRLVEVLQG-----ALAQRGRVGLR 704 Query: 522 LLVDHILQCITPLVTYKTNK--NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 ++ + T + ++ + + + L + E Sbjct: 705 QWIEGCWHALGGPATAGGAEGMQDASRYFALLEQLESRGEVVDWPALGGRLQRLYGAGAE 764 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 G + L + + ++ T ++ G K+ + L + Sbjct: 765 AGPGVVQLM----------TIHKSKGLEFDTVILPGLNRPGKVSERPLLEMWERSHIH-- 812 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 + + L + + P + + + + E + + ++ Sbjct: 813 EWGGVERQLLVAPIPSAADEEAPLFAFLRRVQGEQERHEMR----RLLYVATTRAKQHLH 868 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 +L L + L + P P+ Sbjct: 869 LLALLSEQDKDPK-------ANLPLGMLWPTLSTMDPAEPGAPPPPPQAAQAPRPLWPQT 921 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 L + ++ D + + G + H + + Sbjct: 922 LQRLADGWQPPPPPPAVAVLRDEGMAEPE----GEPPRYDWAGEPARMAGIVTHEWLQIM 977 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ---S 876 ++ + P ++ I S L + + L Sbjct: 978 AQQGVASWRPARVEALQGAIASRLVALGLAKNRIEETAQRVVQALKQALTTLLGRWILHD 1037 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID 934 ++ + + DR + + G I DYKT + +D Sbjct: 1038 GHQEAACERELTGVLGGRLTRI--VIDRTFVDEEGVRWIIDYKT-SAHSGQDVDGFLD 1092 >gi|332530634|ref|ZP_08406567.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624] gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624] Length = 1133 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 81/798 (10%), Positives = 195/798 (24%), Gaps = 66/798 (8%) Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA--------EHLMKGTKGPII 231 +I + + E + A + + + ++ Sbjct: 349 HQQRMIRLARILLEEYAALKRERGWVDMSDVERAALHLLERSELSAWLQQRLDARTRHLL 408 Query: 232 IAGSTGSIPATARLMSTVANHPNGA-----------IVLPGLDCHIPTAIWNTITEKSTN 280 I + P + + + G + D + + Sbjct: 409 IDEFQDTNPLQWQALHAWLSSYAGVGGGASGAGGAPRLFIVGDPKQSIYRFRRAEPQIFR 468 Query: 281 ITSS-------NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 S + H + + +L ++ + + G + Sbjct: 469 AAQSFVQALGGDLLACDHTRRNAPAVLARVNAVLGEAQSQGEYEGFRAHTTESTQAGQAW 528 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADN-EREEAISIAIALRMSLDE--NKKKSA 390 R + + L D E A + ++ K+ Sbjct: 529 VLPPIERQARDKKEAATVWRDSLLAPRLTPEDTLRARECRQAARWIAQRIEAGLPPKEVM 588 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 ++ R+ ++ EL G+ L LT+LL+ + +++A ++ Sbjct: 589 VLARKRDRLVAMQAELLALGVPATQPEQADLGAAPEVQDLTALLDVLVSPGHDLSLARVL 648 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + PL LE+ A + L++ A P Q Sbjct: 649 RSPLLGPHLG----LDDTALLEIAARQRGGKQAWFDLLQTTPPAAWAHADLREVGPRLQR 704 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 +D I + Y + L LQ Sbjct: 705 WQQWVRTLPPHDALDAIYADGDVVARYAAAAPPHLRARVQTHLQALLEAALQFDGGRYAT 764 Query: 571 KLPNLWFEEEGKT-LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + G+ + + + + ++ T LI P+ ++ ++ Sbjct: 765 PYALVRALRAGRLPAPAQPMPEGGAVRLLTVHGAKGLEAETVLILDTDTPPQRAQTMSVL 824 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + D + K L + + A + + + Sbjct: 825 L-----------DWPGEASAPRSFVFLASEKEERLPPSAREAHARERAARGREELNMLYV 873 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 R + +++ + T W QRLL + + + + + Sbjct: 874 ALTRARAQLVFSAVQPHQQNTEGKSWWQRLLHECQP-WEPTPPQSPADGVARFEGMGRVS 932 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 + P A + S I + +L ++D G Sbjct: 933 DMDGREAGAPTQHEPAVAAPAASSAIVLRVLPDIRYQPVPVLAPS----SEEDALAARIG 988 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 + H ++ + + ++ ++ L P + +I H Sbjct: 989 SAMHRLLEWTALDTAEFSPAQ--------LERAGAEQGLTPAQARQAADMARRIVHGAGA 1040 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929 + + +P + ++ DR+ + G + DYK+ + Sbjct: 1041 WVW-RGADVAWWSNEVPVTIEGQAR------RIDRLVRHRDGTWWVLDYKSASYAQAAEV 1093 Query: 930 QKLIDP-QLSLEAAALKA 946 + QL A++A Sbjct: 1094 TRAQMLAQLRAYGDAVRA 1111 >gi|212635557|ref|YP_002312082.1| exodeoxyribonuclease V subunit RecC [Shewanella piezotolerans WP3] gi|212557041|gb|ACJ29495.1| Exodeoxyribonuclease V, RecC subunit [Shewanella piezotolerans WP3] Length = 1224 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 95/836 (11%), Positives = 219/836 (26%), Gaps = 91/836 (10%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTI---LPII-------KSLGDVVEEKFTADLLLSYN 98 I V + LR E + + LP L DV +E +++ Sbjct: 36 ILVQSPGMSTWLRLEIARQNNIAAALEFPLPSSFIWQLCHTLLEDVPKENAFTKAAITWK 95 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIK----------DLYPESPLSLPISPANAIWL 148 L + ++ + A L N + D S P SP L Sbjct: 96 LMELLPSLIDQDDFAPLANYLNNGNQGHGENDLQSQYLEIDTSETISASHPQSPLKLYQL 155 Query: 149 AKNLADIIDIIETEEKKWEDLHALKN------EKYGMWWLLAADFLKIASKYWTERLVEL 202 +ADI D W L A + + Sbjct: 156 CGQIADIFDQYLVYRPDWIAAWEANEPTLPPKGDKLAPAQAWQPILWRALIQFNANTLHK 215 Query: 203 NASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + AL + M + + G + P T ++ +A + ++ Sbjct: 216 SQYHRANLHQALFDKLDDPNTSMTSLPRRLFVFGISSMAPQTLDVLHHLAKRIDVIMLSL 275 Query: 261 GLDCHIPTAIWNTITEKSTNI----------TSSNTTYSTHPQYSL-----AKLLDFLDI 305 H I + + + +P + +LLD + Sbjct: 276 SPCQHYWGDIVDPRLRARMALQYANKQKLEVEWEDKLEVGNPLLANNGKMGRELLDLMLE 335 Query: 306 KREDVKRLGNVSNEMYG--------RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 E+ + G + ++ S + + + +Q+ Sbjct: 336 LPEEHTAFNLDCYQDPGIDCMLHGVQHDILQLSTRGQCLGPDASLYLTVDGRRMLQQDDH 395 Query: 358 DVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLARRVKLEL-- 406 + + + E ++ L L + K ++ D + Sbjct: 396 SITIRSCHSPLREVETLHDHLLEMLSKQTDSKGQPLAPKDIVIMMPDVAAYAPYIDAVFS 455 Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPE 461 I I+ + + + LLN I +++ P L +F + Sbjct: 456 AKQGSHYIPYAIADRGAVQESPLIASFLHLLNINQSRFGLTDIIGILEVPSVLRRFELDD 515 Query: 462 KYLSRAKNALELVALRGNKNSYDI--MDLKSLVLDRIATQKNNT------HVPHWQSRLS 513 L+ K LE +R ++ L + + A + + Sbjct: 516 DSLTILKRWLEQAGVRWGRDGASRAEHQLPAFEQNAWALGIKRLILGYSFADNSPLYQQT 575 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + + + + + N S+++ + L + + Sbjct: 576 LAVNGIEGQTAQALGKLLDFIEALDDVHAALAQNCSLTERIEQLEQLLAAFYSVDDDEQV 635 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 L +E + +L ++ E+G + + V + ++ Sbjct: 636 QL--QEIRDAIVTLAEELTESGHTTPLPIEVLQNWFNSRLSESRVGQRYLAG-SINFCTL 692 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 + R + F + L G+N+GV+P+ F + + + + + Sbjct: 693 MPMRSIPFKIVCLLGMNDGVYPRVQHPVGFDLVAQMDPRKGDRSRRLDDRYLFLEAILSA 752 Query: 694 TRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 + L + + ++ I S + L ++ YL L+ Sbjct: 753 RQQLYISYIGNSERDDSERIPSMLVSEL-----------VEYCQLAYLPAKLALESKASA 801 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 +Y + + ++ + S I + P+ + ++ Sbjct: 802 DNYSKQEAAVFVDKIEQAISTQLICKQPLQPFDERLYHSAHISDSFPLQQSYSAQW 857 >gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13] Length = 1187 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 89/885 (10%), Positives = 206/885 (23%), Gaps = 113/885 (12%) Query: 148 LAKNLAD----IIDIIETEEKKWEDLHALKNEKYGMWWLL---AADFLKIASKYWTERLV 200 LAK L D I+ ++TE L + E L FL+ E Sbjct: 291 LAKALRDDGKKIMKDLQTEAVS---LLCHRQEDLDAHCRLIPVLHAFLQQLDDRLWEMKC 347 Query: 201 ELNASSPVGYQIALMRAE-------------AEHLMKGTKGPIIIAGSTGSIPATARLMS 247 + NA + + + I+I + + Sbjct: 348 DKNAIGFTDAEQLALSLLGTCQADGTIQQTALAKELSEFYQIIMIDEFQDTNNKQDLIFK 407 Query: 248 TVAN----HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 +++ NG + D + ++ T T D Sbjct: 408 LISHKGSAVANGDNLFMVGDVKQAIYRFRLANPRNFIRTMQAFKPYTGK-------DDGE 460 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + + + + + S P ++ ++ + + + Sbjct: 461 NACILLNRNFRSSPEVIAMVNFLFSTLMTPQVGEVAYTSEEALHQGAAFAETPRNTEIAL 520 Query: 364 ADNERE----EAISIAIALRMSLDE--------------NKKKSALITADRNLARRVKLE 405 ++ + EA IA + L E + ++ ++ Sbjct: 521 LEDGEQDTNPEAAYIAKRIARMLREGAPVSDGANHTRPCTPRDFCILMRNKAKGSVYVQA 580 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 L G+ ++L +LL I A+A ++ P+ +F E Sbjct: 581 LAEQGVAAYSEEAAAYLKAREITLLLNLLRIIDNPPQDTAMAAVLLSPMFRFDMDELTQL 640 Query: 466 RAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 R + L A +L +K Q+ ++ L+ Sbjct: 641 RLLAPKVSLYAAICRGIGETGAADAQPLLTGAMYEKTKGFYNALQAFRMYAMQDTPERLI 700 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 I + L + + ++ L + Sbjct: 701 RRIYESTDFLSVMQRYSDGAKKQANLRLMLTYARNYETASGGGLSGFLHYIAQVSARGKD 760 Query: 585 SSLFSKIIETGSCIKAN------AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + + + +E+ + + ++++ F+ Sbjct: 761 FQPGTAVSGSEDVVAIKTIHKSKGLEFPFVFLA-ESETDFNHQDDRAAFQFLQEYGFGFR 819 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL-------------NLKTAEKYIGQAA 685 L T+ + + + L L+ + QA Sbjct: 820 LQDPTVYTRYKTLPYAAISMQRESYAKSEELRLLYVALTRAKDKLFLPLRLNDARKKQAF 879 Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 + + + + N + L + L Sbjct: 880 RLGAAIAASGRVTPSIAASANCMADWLWMALLTAENAAPLREACQMPPCPLQPAVPMEIL 939 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--------------- 790 ++ P P +P + ++ Y I Sbjct: 940 HPEDSSDATEQDTPTPAAYPKPDPAMVTALRMQFAAVYDDRLMGIPSKTSVSALSKDEDA 999 Query: 791 ----LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 L+ + ++GT H + ++ + + + Sbjct: 1000 VNLALRRPRFMAEETALTGAEKGTALHAFLQYADFAVAAQDPDAERQRLTE------DGH 1053 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH--------- 897 D + + F + E ++ + I + + Sbjct: 1054 LTRRQADSLDLNRIRAF---FASPLYERIRQAEHVWRERKFLVRISDLQLLDQPQYTGTN 1110 Query: 898 --LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 L+G D + G + + DYKT E + QL L Sbjct: 1111 AMLSGIMDLVFEEPDG-LVLVDYKTDYVQGGEMLTERYQRQLLLY 1154 >gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 768 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E++ ++ G ++ +P + + + + Sbjct: 68 SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + I W AK LA IID + Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + + + + A + +RL+ LNA + ++ +H Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + A + +A + D W + Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + + + R Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396 L + + V +I + EEA + LR + K A++ + Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R + + I G + L I + D +A +V P Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G L D + L ++ Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L I Q + L+ + + +S +D T+ + DE L Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511 Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + ++ + E ++ + +++ ++ ++D + ++ Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FD + L G EGV+P + + + L + E+ A A Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617 Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + R + SR++ L + L+K+ + D + Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIDE-KSLLRKKAPIWRDIWAEDRSKNPAY 676 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + PP + R + + Q + LK Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716 >gi|227495237|ref|ZP_03925553.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436] gi|226831689|gb|EEH64072.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436] Length = 281 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 21/240 (8%) Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + + S + + P+ T RGTL H ++ + Sbjct: 5 QATRRKALSATSTSTWKQCQLKFRLIYLDGFREPPNP-----VTTRGTLVHAVLEHIYDY 59 Query: 823 RINKNTPEINHLMKQII-------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + E + D F+ W + + S+ + E + Sbjct: 60 QAGMRNLETAKSLTAAQYQEMFAKDPEFQAMFTEESALNQWLAEVNSLVESYFQMENPQR 119 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 +E + S GI + GF DRID +G + I DYKTG +P+ + + + Sbjct: 120 --LEPYARELLVDAE-TSSGIAIRGFIDRIDKAPNGAIRIVDYKTGKSPRPQYMEDKLH- 175 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Q+ + ++ A + L + ++ + + + + + Sbjct: 176 QMRFYSLLMRQAG-----RGVPARTQLVFLGDGKTLTFDPQPEQVDAFEHYLTQIWQQIE 230 >gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] Length = 1147 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 86/828 (10%), Positives = 198/828 (23%), Gaps = 67/828 (8%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM--- 215 E + L + + W A + E L L+ + L+ Sbjct: 327 CERWLAALDGLARQHSLRLNGAWFSAGLRYLEHYQALKEELRTLDFTDLEWRAYQLLNHG 386 Query: 216 --RAEAEHLMKGTKGPIIIAGSTGSIPATARLMS------TVANHPNGAIVLPGLDCHIP 267 ++ + ++I + P RL+ G V D Sbjct: 387 DHALWVQYRLDSRIEHLLIDEFQDTNPTQWRLILPLLEELAAHGERQGRSVFLVGDTKQS 446 Query: 268 TAIWNTITEKSTNITSSNTTYS--------THPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 + + I + S ++DF++ L Sbjct: 447 IYSFRRADPRLQEIAARWIEERLNGRPETLDWSWRSSPAVMDFVNRVFTACPALRAALPG 506 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE-----REEAISI 374 + + + + + D + + D + E I Sbjct: 507 FHPHDTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGESLHAREGARI 566 Query: 375 AIALRMSLD-------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A +R +D + ++ +R ++ L GI +A L Sbjct: 567 AARIREMVDGGQVVGRGASARPMHFGDITILVRNRTHVGAIEDALRDAGIPYLSAARGEL 626 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 L L +LL + +D +A+A +++ PL E Sbjct: 627 LDHLEVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLA-----------DAGP 675 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 L+ L D + L+D I L Y+ Sbjct: 676 GPWHERLERLAPDLPPGSALKRAADKLTRWRAWSGALPVHDLLDRIFLDGNVLARYQAGS 735 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + ++ + L+ + L + S + Sbjct: 736 RADRVPTVMASLIRFLELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGAEQRV 795 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I I L + + G + ++ Sbjct: 796 RIMTIHASKGLEAPVIFLADAAAVPR-------DHKTYEPLVQWPAGEPRPRLMQLLPRS 848 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 + + + L + +A + R ++ + ++ + Sbjct: 849 DDVDSLTRQALAHHQTAREREEANLLYVALTRARQVLIVSASARGKGDGGWYARIREAIA 908 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + G+ D + + T ++ PP P + ++ + Sbjct: 909 PEAVSEELDTGVPGRFAEDGSWVHEAGTPPVAAEQAVATPPAAQVPEGLNR-RLECAAPE 967 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 +R D D RG H ++ L + + + + + + Sbjct: 968 REIAPSRAAAGYAEGEREDGDEDARLRGVGIHRLLEWLAGGMR-----DSDAALIRRLAA 1022 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 + P + W + + + +P + + G Sbjct: 1023 ELGLDPGHPDLGE-WLGEARAVLAEPGLAAVFAPAPDCVDYCEVPLQYTAADGR-TVYGI 1080 Query: 902 ADRIDLLKSGFVDITDYKTGDNPK---KETAQKLIDPQLSLEAAALKA 946 DR+ + + + DYKT ++ ++L A ++ Sbjct: 1081 IDRL-RVGRERILLVDYKTHRVADEAAARQVAEVYAAPMALYAEGVRR 1127 >gi|221194763|ref|ZP_03567820.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626] gi|221185667|gb|EEE18057.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626] Length = 1037 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 107/962 (11%), Positives = 224/962 (23%), Gaps = 206/962 (21%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 I + E + + L+ + + I+++G + + + + Sbjct: 145 IVLDRYLELIHKRGFLEKDESYTLLISLLPQSYC--EQQSIVVSGVENLTFSEKQFLCNL 202 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + + + +VL A + L++L + Sbjct: 203 SQNTDVQLVLSTPQNEAGNANRELL-------------------ARLSRLSHK-----DV 238 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + ++ FLP T+ + V L+ Sbjct: 239 LFVNDVQEPHDAEVEALLHTIFLPQQTTLPLKSQ-------------GKVTLLSPAGILA 285 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTTLHSS 428 E I ++ + + K + +N A R L GI +S + + Sbjct: 286 EPALIIEHIQGLIAQGVKSFGIYAPQQNEAWRQLAPRLAAHGIPAKTVMRQAVSDSSCAR 345 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL 488 L+ A+ K + + A + Sbjct: 346 AFLGLVRAVCK-------------------------LKNLCEVWPDASQAELGDMSWWPP 380 Query: 489 KSLVLDRIA------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + +V + T+K W+ L L T ++ N Sbjct: 381 REIVDFLFSPLSFVSTEKAWDIDKMWRKNRILTPDHLLRFLRQASATSKECAATVESILN 440 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 +L + S K Sbjct: 441 GRIEKALHRLLIACDEHREDFDDEAYLLISNSLSAIMTVAQALHKLEAKADIASEQKFYE 500 Query: 603 IEWIDIITRLIDGETVKPKIEKSS-TLFILGTLESRLLN-FDTLILGGLNEGVWPKNTAK 660 + + ++ + K+ ++ IL R N FD +I G++ T Sbjct: 501 VACQKSFSLCLNNGAAETVGSKAPVSVEILSDKSMREPNTFDAVICLGMDSVNTSLPTKD 560 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT---RSLRENNIPTIASRWLQ 717 S ++ L + + + + + E++ T AS L+ Sbjct: 561 --KASDLLAEKLEGVRPIAPLAEGRRRLYRMLASARTYVSLACVAHSEDSNKTFASVVLK 618 Query: 718 RL-----LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ----------------PHYKR 756 L G + + G+ + K P Sbjct: 619 ELLSCYETAEGEFNLPQLTRGEGRLSANLLLGGKTPAKVDSLPLRPTGSISETLKPFVIL 678 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P + Q + S S+I+ + PY + +R LKL ++GT H ++ Sbjct: 679 PSYRGVEQPQIQELSASQIESYLECPYKWFVQRRLKL---DRVDAGFSGLEKGTFIHRVL 735 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFE-------------------------------- 844 + + + + L + + Sbjct: 736 ELTHMQLLQEALGTSDALSDEYVWQAVATSLPDSRISQDTLAHVRYVLSTQFDALAKEQF 795 Query: 845 -----------KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + L+ E + E F + Sbjct: 796 VAPQKTQRRTQRLVPHTVAQHQQMQKLREDLFGLLDFETDKFVTFEPRFFELKFGADGGF 855 Query: 894 I----GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQ------------- 936 G+ TG DRID+ G I DYK K A Q Sbjct: 856 PATYAGVAFTGSIDRIDVNARGEAIIIDYK----HKAAQALSSYAVQKSVVEQNPEEDMP 911 Query: 937 ----LS------LEAAALKAGSFSQIDCRKVANLFYIR---------------------- 964 L + A ++ + + Y+ Sbjct: 912 SHVELPRHVQAIIYAQVVRT--YLKSRNLTSVGAMYLGTHQNYALYGAAPELYINKIFGL 969 Query: 965 ---LKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 K + + +E + + + V + NG+ +H L +++ Sbjct: 970 SDEQKPSKGMLSCVAGDTVGAFNEYLDAWEDKIKQAVERMLNGDI--HAH-ALDKEACAY 1026 Query: 1022 SE 1023 Sbjct: 1027 CP 1028 >gi|205353936|ref|YP_002227737.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273717|emb|CAR38710.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629050|gb|EGE35393.1| exonuclease V subunit gamma [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 1123 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 103/942 (10%), Positives = 240/942 (25%), Gaps = 115/942 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + +P P I V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERERLDEPFEPE-----MILVQSTGMAQWLQMTLSQKFGIAANIA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L + +L S +L L+ L D + + L+ Sbjct: 63 PLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQ----LLDKDEFVLLLHYLTDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 L+ AD+ D W + L A +T Sbjct: 119 TDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGEAQNWQAPLWKALVEYTAA 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + ++ + I G + P R + + H Sbjct: 179 LGQPRW-HRANLYQRFIQTLESATACPPGLPSRVFICGISALPPVYLRALQALGKHIEIH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------------ 298 ++ + I + ++ + Sbjct: 238 LLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPLFRENQNPEALFNSDGEQDIGN 297 Query: 299 -LLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNLLHRIQADILELESHAVAGVNLEE 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + + + ++ + + E + L L+ + + ++ AD + Sbjct: 358 YSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + T + IS + SLL+ + L+ Sbjct: 418 YSPFIQAVFGSAPTERYLPYAISDRRARQSHPVLQAFISLLSLPDSRFVSEDVLALLDVS 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L+ + Sbjct: 478 VLAARFTINEEGLRYLRLWVNESGIRWGIDDDNVRELELPATGQHTWQFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L + + + L+ + + +W + L + Sbjct: 538 ESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + + ++ ++ + D + + +D E + + Sbjct: 598 FFLPDADTEAA--MTLIEQQWQAIIAEGVAAEYGDAVPISLLRDELAQRLDQERISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ A L + S ++ Sbjct: 656 AGP-INICTLMPMRSIPFRVVCLLGMNDGVYPRQLAP---LGFDLMSQKPMRGDRSRRDD 711 Query: 684 AAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG--------------- 724 + F A + L + R +N S +Q L+ G Sbjct: 712 DRYLFLEALISAQQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDETLTCDE 771 Query: 725 -TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF--------------PPLEAQPRT 769 R + + + +Q Y R P P T Sbjct: 772 SEARVKAHITRLHTRMPFDAQNYQPGEQQSYAREWLPAASQSGKAHSDFVQPLPFTMPET 831 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINK 826 + +++ P + + L+++F + PD G + + +L+ + + Sbjct: 832 LTLESLQRFWAHPVRAFFQMRLQVNFRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEE 891 Query: 827 NTPEIN-HLMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISH 865 + E + + + E + L ++ Sbjct: 892 DDAERLFRRFRAAGELPYGAFGEIFWDAQCQEMQQLASRVIA 933 >gi|294053734|ref|YP_003547392.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221] gi|293613067|gb|ADE53222.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221] Length = 1136 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 101/897 (11%), Positives = 230/897 (25%), Gaps = 58/897 (6%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L TLV N L + + V + LR + G + + + + Sbjct: 14 LAETLVRNLASSERVTDRLEATAVIVQNAGLGRWLRLWHAKRCGISAAV--TMPFAQSFI 71 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 ++ L ++ +S ++ L+ + L L Sbjct: 72 AKELER--LGLFDRWQELSPTLLRWQIFDLLQSREFEHWSDAGPLSAYLGLEHRAVERRC 129 Query: 146 IWLAKNLADIIDIIETEEKKW-EDLHALKNEKYG-MWWLLAADFLKIASKYWTERLVELN 203 LA LA++ D +W E A + W A + + +L+ Sbjct: 130 WALAGRLANLFDRYAVHRPEWIEAWVASEQGDVSLPHWNWQAQLFRSVLERLGLSSADLS 189 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 A + A+ + + + G PA R ++ + Sbjct: 190 RRLIGRAVQAYLVADEPGQSRDD-SAVHVFGIGSFPPAFLRFFQRLSVSREVYLYHLVPS 248 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + Q+ LL + L + G Sbjct: 249 EAYLGELPKNYRATLLTELEGGELGADADQWLQNSLLIANGQAAARFQSLLLSMDLPTGE 308 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD 383 V+ + D ++N L ++L + + E + L + Sbjct: 309 LPVVEELAARSDLQHLQNAVRLNEPYCEFN-ADGSLSLHQCHSRIREVQVLQQQLLAQFE 367 Query: 384 ENKK----KSALITADRN-----------LARRVKLELTRFGINIDISAGIPLSTTLHSS 428 + ++ + + + RV + I+ Sbjct: 368 ADPDLRPEDILVLVPEISDYTDAIQSVFGMGTRVHAGRDPIKLPYCIADQKNSGDESCWR 427 Query: 429 ILTSLLNAIFKLNDFMAIATLVKH-PLAKFGFPEKYLSRAKNAL------ELVALRGNKN 481 T+LL + F + L+ P+ + ++ L + +L + ++ Sbjct: 428 FFTALLRLMKGRQLFSEVIALLDFDPVCRRLGLDRELLKELASLLQSVGVRWGINQASRV 487 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 S + + ++ + + + + S + L + I L Sbjct: 488 SKGLPEYEAYSWEHGLQRLYDGLIYGEWSPKDCASGLNSAHLQESIGSLTQFLRPVFDLA 547 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 S DW +L ++ L+ W + L+ ++ S + Sbjct: 548 QRDSEQHSFKDWAELLLSVLRQTL--GEGHESGEWM----RLLAVEIGELQLHASDVTIR 601 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + ++ P + +R + + + GL+EG +P+ Sbjct: 602 FDTFCTMLEEGDLSTA-GPSGLLRRGITFCRLQPARHIPAKVVCILGLDEGSYPRQERGL 660 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEM----------------ANGTRHLIYTRSLRE 705 F +Q A+ + + N + L + + Sbjct: 661 EFDLIDLQRRHAKALAKTSLRYQEIHYLGDVHIRDADRQLFLDCILNARQRLYLSYVGQS 720 Query: 706 N--NIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 + N S L L + K+ + L R Q P Sbjct: 721 DQNNEDLPPSLLLNELKQFLERVPDPADEKQVAERRLGLARACVRHPLQDWSIHNFEHPT 780 Query: 763 LEAQPRTYSFSEIKQLIN-DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 ++ Q D +V R L+ + + + G + + Sbjct: 781 MQLGEPPVPVHFNSQYARIDRQSVSVARFLEPVAVALPEHEHADQLTGEQLLRFLKDPAD 840 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + + +++H ++E L W L ++ S Sbjct: 841 YYLKQQLHVNLEQL-SWLETHEDQEALELDALGHWELRARVFDAWCLAKQQGHVSER 896 >gi|19552714|ref|NP_600716.1| endonuclease [Corynebacterium glutamicum ATCC 13032] gi|62390382|ref|YP_225784.1| endonuclease [Corynebacterium glutamicum ATCC 13032] gi|21324268|dbj|BAB98893.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032] gi|41325719|emb|CAF21508.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032] Length = 278 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%) Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 +P S S P R I +L +GTL H ++ + K Sbjct: 12 PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTV-----AQVKGTLVHAVLEYMHKLPR 66 Query: 825 NKNT-PEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEK 880 + P + +K E++ L + + F S + L E + + Sbjct: 67 EEREYPAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDA 126 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 + + G+ + GF DR+D +G V + DYKTG PK + +Q+ Q+ Sbjct: 127 TECEMYVDTVLP-NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA-QFQMLFY 184 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991 A F++I + L Y+++ ++ + + +L K Sbjct: 185 ALVYWR-MFNEIPAQ--LRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKIE 234 >gi|146307013|ref|YP_001187478.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas mendocina ymp] gi|145575214|gb|ABP84746.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas mendocina ymp] Length = 1158 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 111/955 (11%), Positives = 239/955 (25%), Gaps = 89/955 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L V+ R PL P L + + V + Q L+ E G + + Sbjct: 43 LRALAVQWMRRYPLWP--LENEVLLVQSNGIAQWLKLALAERDGCGIAAALDVDLPARFL 100 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + + +L + P S + + RL+ + L + L+ Sbjct: 101 WQAYRN--VLGKDAIPQESPLDKAPLTWRLMRLLPGLLAEEAFAPLRRF-LADDQDLRKR 157 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTERLVEL 202 LA+ LAD+ D + W A ++ + W L ++ Sbjct: 158 HQLAERLADLFDQYQVYRADWLADWAAGQDRLRTSRGGERPLEGDSRWQPALWRALLADV 217 Query: 203 NASSPVGYQI----ALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + + AE I + G + ++ +A Sbjct: 218 GEQHLAESRAGVHPRFVARLAELDAPPAGLPRRITVFGISSLPAQVLEALAAMARFSQVM 277 Query: 257 IVLPGLDCHIPTAI-----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + + H I + Q+ L + Sbjct: 278 LYVHNPCQHHWGDIVEDKDLLRHEYRRQQRKGRPGAQIGLFEQEDMHQHGQPLLAAWGKQ 337 Query: 306 KREDVKRLGNVSNEMYGRSMVIS------------KSFLPPDTSDMRNTDILENKIPNIQ 353 R+ + L R L D D+R + P + Sbjct: 338 GRDYINLLDQYDEPQRYREQFDRIDLFSPASENSLLGQLQNDILDLRPLAETRSTWPPVD 397 Query: 354 KCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-- 406 + A + + E + L S E + ++ D N + Sbjct: 398 PVKDHSLRFHIAHSAQREVEVLHDQLLASFSEDATLRPRDIIVMVPDVNAYAPHIQAVFG 457 Query: 407 -----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP- 460 I ++ L LL I L+ + F Sbjct: 458 QFASDDPRFIPFTLADQGLRGKEPMVIALEHLLRLPDSRFSVSEILDLLDVAALRQRFAI 517 Query: 461 -EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRL 512 E+ L + LE +R +S L ++ + V + Sbjct: 518 TEEQLPTLRRWLEGAGVRWGLDSSQRQSLGLGENLEQNTWRFGLRRMLLGYAVGTGDAFA 577 Query: 513 SEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 E + L I L + + + W + + L + + + Sbjct: 578 GIEPYDEIGGLDAALIGPVTRLLESLDRHLQQLREPATPVRWGERLRSLLDDFFQPQSDR 637 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 L + L + + + +D + + + + Sbjct: 638 EEVL-TTQLLDALDAWLALCEAATLGEALTLPVVREAWLDGLDQGRLSQRFLAGA-VNFC 695 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 + R + F + L G+N+G +P++ A F ++ + + +A Sbjct: 696 TLMPMRAIPFRQVCLLGMNDGDYPRSQAPLDFDLMAGDYRPGDRSRREDDRYLLLEALLA 755 Query: 692 NGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF--------------------- 728 L + R +N S + +L + + Sbjct: 756 AR-DRLYISWVGRSIRDNSERPPSVLVGQLRDHLASAWTLAGGGDLLHGLTTEHPLQPFS 814 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 + + Q P + + ++ + DP + Sbjct: 815 RRYFDGEGQLFSYAHEWAALHGQVSTHESAAPLPAWEEGLQLTPELLQSFLRDPVKCFFT 874 Query: 789 RILKLDFIPHFKKDPDRTDRGT--LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 R LK+ + D L + E + K + + ++ D Sbjct: 875 RRLKVYLDEEEQAQLDSEPFALDGLQRYQLQEALLKAAIAGEGDSDDALRAAADRLQRSG 934 Query: 847 NLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 LP +R+ + + ++ + + + P ++ + G+ L G Sbjct: 935 VLPLAGFGEQYRNALLEPLPAQVQRYQGLCLCW-PSLLESPQRLTFAAAGVQLDG 988 >gi|333024559|ref|ZP_08452623.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071] gi|332744411|gb|EGJ74852.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071] Length = 1164 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 63/604 (10%), Positives = 141/604 (23%), Gaps = 49/604 (8%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F LL + L + RLL A + L + P P Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190 L +L + + L + A L Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRKVPEAAAARLALTE 222 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245 + + + R EH + +++ + A L Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 +S + G V D W + + + + + L Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 S +++ + + + P + V Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAGKAADGFVRCALLP 385 Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423 EE +A ++ + A++ R++ L I +++ L Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L ++ + ++ L+ P + G + L + L A + Sbjct: 446 LPEIADLRAVCEVLQDPGANSSLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + V + + D + + L Sbjct: 504 PDRRLAAAVEGVDPAEIVSLADAVDTFVEGGPDAADGLPFSAGARARLARLGRELRELRR 563 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ +V L E + + T A Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +T+ +L +++ L +D + + GL +P + + F Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVAKQFPSDRGREKF 683 Query: 664 LSRV 667 +R Sbjct: 684 TARA 687 Score = 58.0 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 78/771 (10%), Positives = 176/771 (22%), Gaps = 47/771 (6%) Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 G I A IP +S + + P A + + +++ T Sbjct: 416 RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANSSLVRLLTGP 475 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 A+LL +D R + E + ++S + + Sbjct: 476 RWRIGARDLALLGRRARLLAGGRSGEDDPDRRLAAAVEGVDPAEIVSLADAVDTFVEGGP 535 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401 + E + AL L + + +T Sbjct: 536 DAADGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 L ++ + SLL + L + + L Sbjct: 589 SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 K L+ K + + L + ++ T D Sbjct: 649 KVLTAHKAKGLEW------DVVAVPGLVAKQFPSDRGREKFTARASVLPHPLRGDAATLP 702 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + + +T + L + Sbjct: 703 DVPEWTAKGLKAFQDGMRVHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 T A D L + + + + + Sbjct: 763 LTALHDHCVRGHGEIERWAEPPGPEDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 +L + ++P+ + G A D Sbjct: 823 HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYE--EEPDPYEGG 880 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 P + D + + W R LD + +R Sbjct: 881 PDAYEGGPDPYGSDAPPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRRAAASV 938 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 P + + +++ +L DP + + P + RG FH + + Sbjct: 939 REVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWLERRLT 993 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + + E + ++ +F + + Sbjct: 994 AGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRPAHR-- 1042 Query: 882 FVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 V +P ++++ + G D + D +I D+KTG + + QL+ Sbjct: 1043 -VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGRDRTRADP-----LQLA 1094 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + A ID ++A ++ ++ + + + + Sbjct: 1095 VYRLAWAE--RHGIDPEEIA-ATFVFVRAGEAVRPGRLPGRAELERLFAAE 1142 >gi|258627297|ref|ZP_05722081.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM603] gi|258580335|gb|EEW05300.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM603] Length = 1148 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 115/987 (11%), Positives = 246/987 (24%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLVSGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + ++ Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLQINGEQVTIGSEVSPLKGDVESYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340 LL + D L +++ I L Sbjct: 298 LNHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGT 725 ++ + + + L + R +N + S + LL L G Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 726 DFFDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PF 760 + ++ + T + + + R + + Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|25028185|ref|NP_738239.1| hypothetical protein CE1629 [Corynebacterium efficiens YS-314] gi|23493469|dbj|BAC18439.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 291 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 20/242 (8%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P P + +P S S P R I +L +GTL H ++ Sbjct: 16 APAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTV-----AQVKGTLVHAVLE 70 Query: 818 ELIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE 871 E+ + ++ P + +K + E +P + + + E Sbjct: 71 EMHRLPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGY--FE 128 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + V + + G+ + GF DR+D +G + + DYKTG PK + +Q+ Sbjct: 129 MENPQGFDASDVEMYVDTVLP-NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQ 187 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEK 989 Q+ A F QI + L Y+++ + + + +L + Sbjct: 188 A-QFQMLFYALVYWR-LFDQIPAQ--LRLMYLKVNDSMFLTPSREQLEYFERDLGDLWAR 243 Query: 990 SL 991 Sbjct: 244 IE 245 >gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712] Length = 919 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 70/671 (10%), Positives = 156/671 (23%), Gaps = 61/671 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV-------VEEKFT 90 + V T +A EL + P + + F Sbjct: 67 GTGQVAPEQVLGLTFTNKAAGELAERVRTALVRAGVTDPDVIDPDEPPGEPRISTYHAFA 126 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFTTLIT 178 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKY---------------GMWWLLAADFLKIASKYW 195 +L + + E L A + A L + Sbjct: 179 DLLALDAELAEHLVPPEKLLAYDSALLTALAEAKLSNAELRKIPEAATARRELLDLVVRY 238 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV- 249 + + +++ + A L+S + Sbjct: 239 RAAKRSRDLLDFGDQIARSAELATTRPEVGEILRDEFRVVLLDEYQDTSVAQRLLLSGLF 298 Query: 250 ----ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + G V D W + + + + ++ L Sbjct: 299 GQGTGDRATGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGSPADRYSL------ 352 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 S ++ + + + + + V + Sbjct: 353 -----------SENRRSGGRLLDLANGLAAPLRALHAGVEALRPAPGAERDGSVRIALLP 401 Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423 EE +A +L + ++ A++ + + L + +++ L Sbjct: 402 THAEEIDWLADSLAHLVRTGREPGEIAVLCRTATDFPAIHVALVARDVPVEVVGLSGLIH 461 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L ++ + A+ L+ P + G + L + L RG + Sbjct: 462 LPEIADLVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARLL--VHRGGDDPD 519 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + V + + S + + L Sbjct: 520 PEQRLAAAVEGVDPAEVVSLADALDTFLDSGAAADDGLAFSADARVRFARLAAELRALRG 579 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + + ++ V L E + + A Sbjct: 580 SLADPLMDVLHRVLSATGLEVELSASPHALAARRRETLGHFLDIAAGFASLDGEASLLAF 639 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +T+ +L +S+ L +D + + GL G +P A+ + Sbjct: 640 LGFLRTAVQFEKGLDSALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAGQFPSARARESW 699 Query: 664 LSRVMQSDLNL 674 S+ L Sbjct: 700 TSQPQVLPHAL 710 >gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505] gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505] Length = 1142 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 128/1094 (11%), Positives = 252/1094 (23%), Gaps = 174/1094 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEE---------------- 87 + T++A EL + +LP D E Sbjct: 69 QILGLTFTRKATAELDQRVASRLAGLSAAGLLPATAPEHDSGAEGTADATDVGEPMIATY 128 Query: 88 -KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 F L+ + L V L+ AR W+ + P SL + + + Sbjct: 129 NSFAGTLVRDHGLRIGVDPDSTLITQAR---SWQIVTSLLEARTLPLPNESLSHNASATL 185 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIA 191 LA +L+ + IE K DL W D Sbjct: 186 VLADSLSQNLLTIEEAAKDLADLSEQFTALAAIKGCKTLVGKAPAVMAEWEALLD----V 241 Query: 192 SKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246 EA ++ +++ + A RL+ Sbjct: 242 VAELHAHKRHHGLLDFGDQIALACAIAESVPEAAGQVRAQYPAVLLDEFQDTSVAQVRLL 301 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 S + V D H W + + + + Sbjct: 302 SALFADSG---VTAVGDPHQAIYGWRGASAAALDTFHQRFNPTGTALLDSGTSPVEATPV 358 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA-- 364 E N S + + V + + L + + A Sbjct: 359 LELSTSWRNDSTILDVANFVSAPLRSGVVEDGDPVGEHLTVAPLRARPAAFGLEPGAAFG 418 Query: 365 ---DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 + EEA ++ L + + A++ R + EL G+ I + Sbjct: 419 AFLQDPAEEARTVVAFLAERWSPSAE-MAVLCRTRAQMDPIAAELEAAGLPYTIIGLGGM 477 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + + +LL A + L+ + L+ L A K Sbjct: 478 LYVPEVADVRALLTAASDPERGDRVVRLLTG-FGIGARDLRALASLARELTRPATESGKE 536 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE-LAVLLVDHILQCITPLVTYKTN 540 + + + ++ +T + + + EE +E A + + + Sbjct: 537 APGTHGDHAEADSPLLSEALDTLLRWHEDGVQEEQEESAAARDLTEAGRAVALRTARAIR 596 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + +L + D L L R + + + +T + Sbjct: 597 RIREAVSLPLPDLVALAEQVLDLDIEIAARVGHTMGHRALDTFHETARAFAADTDAPTLT 656 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP----- 655 +EW+D D + + +L ++ L +D + + G++E V+P Sbjct: 657 GFLEWLDAAEEHEDAMSAPEVEPSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSA 716 Query: 656 ---------------------------------------KNTAKNPFLSRVMQSDLNLKT 676 P L+ M + Sbjct: 717 VKDDLRVAETGWMGSTSTFPFPLRADAGDLPPFTVGDLDPAVTDKPLLTETMSAYKEALG 776 Query: 677 AEKYIGQAAHDFEMANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 + + + RH + + + + P SR+L L + Sbjct: 777 RQSLREERRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELQRRDLLSPYAEGWV 836 Query: 734 R-GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND----------- 781 + + L P +A + + + D Sbjct: 837 DFDESRPNPLTALTQVGTWPPDADAAEPMDNQAPEAEIEGTAVTDRLADVRRARYAAAAQ 896 Query: 782 -----PYAVYARRILKLDFIPHFKKDPDRTDRGTLF--------HNIITELIKKRINKNT 828 A A+ + R + G L L + Sbjct: 897 VTAAMGGAAPAQEVPAQAQPDDEMVRRWRLEAGLLLAERTRALSDGPAVRLPEHLAATRL 956 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI------------------------- 863 ++ + P +FH Sbjct: 957 DDLRADRHRFALDLRRPLPPEPRAAGRLGTVFHDAVAQRLSARGTLFGLGQAGVPDSLGP 1016 Query: 864 -----SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITD 917 +LE E + + + I L D + G I D Sbjct: 1017 QDRDRIERWLETAENLPLLEDYVLAETETDREITVGATTLRCRMDAVFQRLDGSGWLIVD 1076 Query: 918 YKTGDNPKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 +KTG QLS+ A A G Y+ + Sbjct: 1077 WKTGRRQVPVD-------QLSVYVHAWAASQGV-----PTGAVRAAYVYVDYPEGRVDEL 1124 Query: 976 NDKKKYSADELSEK 989 + + S +++ Sbjct: 1125 SAEGLLSIEQIQAA 1138 >gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] Length = 768 Score = 105 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 96/760 (12%), Positives = 211/760 (27%), Gaps = 123/760 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E++ ++ G ++ +P + + + + Sbjct: 68 SQILAVTFTNKAAREMQMRVGDLLGSQAENMPWLGTFHSIAAKM---------------- 111 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + I W AK LA IID + Sbjct: 112 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 168 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + + + + A + +RL+ LNA + ++ +H Sbjct: 169 TPDKIAGKEEDSFADGQGAAL------YLAYQKRLLSLNACDFGDLLLHMLVILTQHREV 222 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + A + +A + D W + Sbjct: 223 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 280 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + + + R Sbjct: 281 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 319 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI---SIAIALRMSLDENKKKSALITADR 396 L + + V +I + EEA + LR + K A++ + Sbjct: 320 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 373 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R + + I G + L I + D +A +V P Sbjct: 374 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 433 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G L D + L ++ Sbjct: 434 IGKKAMEKLYQAAFL------------DRIPLAEAAEKLVSE------------------ 463 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L I Q + L+ + + +S +D T+ + DE L Sbjct: 464 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKAMLR 511 Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + ++ + E ++ + +++ ++ ++D + ++ Sbjct: 512 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 566 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FD + L G EGV+P + + + L + E+ A A Sbjct: 567 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 617 Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + R + SR++ L + L+K+ + D + Sbjct: 618 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKTPIWRDIWAEDRSKNPAY 676 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + + PP + R + + Q + LK Sbjct: 677 NSAKEAITPPWQLASRRGAGWQRAQKAAASPSPAVSHPLK 716 >gi|294631277|ref|ZP_06709837.1| ATP-dependent DNA helicase [Streptomyces sp. e14] gi|292834610|gb|EFF92959.1| ATP-dependent DNA helicase [Streptomyces sp. e14] Length = 518 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 58/417 (13%), Positives = 113/417 (27%), Gaps = 28/417 (6%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE+ + + +++A ELR TG + P + Sbjct: 66 TLVESVARRVARGQDPERILVLTFSRKAAVELRDRMALRTG--AAHAPRATTFHSFCYAL 123 Query: 89 FTA--DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A D L +S ++ + + L+ + L + Sbjct: 124 VRAHQDSGLFVEPLRLLSGPEQDVTVRDLLAGQVDLER---LGLAHVRWPDELRACLTTR 180 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ + L A W AA FL + V A Sbjct: 181 GFADEVRAVLARSRELGLGPDALAAFARRIGRPDWQAAAVFLAEYLDVLDLQGVLDYAEL 240 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + R E + + + + PA RL+ +A G +L D Sbjct: 241 VHRAVLLARRPEVADRLAARYDAVYVDEYQDTDPAQVRLLRALAG--GGRTLLAFGDPDQ 298 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + +A L + ++ M Sbjct: 299 SIYAFRGADVNGILQFPQAFPRADGTPAPVAVLRTARRSGAALLAATRLLAQRMP----- 353 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 + + + ++ + V + E +IA LR + E Sbjct: 354 ---------LTRLPADKVRAHRELVPARDGGRVEVHTYPTPGAEVDNIADVLRRAHLEDG 404 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIF 438 + + L+ A ++ LT G+ +D+ PL + L + L A+ Sbjct: 405 VPWGEMAVLVRAGARTIPTLRRALTAAGVPLDVDGDDLPLRHEPAVAPLLTALRAVA 461 >gi|110639638|ref|YP_679848.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC 33406] gi|110282319|gb|ABG60505.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC 33406] Length = 1041 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 96/795 (12%), Positives = 216/795 (27%), Gaps = 95/795 (11%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGST 236 A+F + + + + +++A E + I++ Sbjct: 224 AAIAEF-----ANFNAAMGAIRRYDYNDMILWVLKAFKENELLLRNYQERYQYILVDEYQ 278 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + + ++ +A++ + D + K+ +S +L Sbjct: 279 DTSGSQNEVVDLLASYWERPNLFVVGDDDQSIYRFQGANIKNIIDFNSKYNP------AL 332 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + + + V R + + T+ Sbjct: 333 IVLKENYRSTQAVLDASMAVIKNNNERLVNSVQGLDKQLTAKGIIAASHVEP-------- 384 Query: 357 SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINID 414 +IE NE E S+ L E + + A+I + + L + I ++ Sbjct: 385 ---KIIEYYNELHEEASVVEQLEKLHHEGVDLSEVAVIYRKHSKVADIIKVLEKRKIPLN 441 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDF-----MAIATLVKHPLAKFGFPEKYL--SRA 467 I I + L +L I K N++ + L+ + + Sbjct: 442 IKQSINVLHLPFVQNLIDILAYIQKENEYPDSGEEQLFRLMHFEYFNIDPTDIANISRKT 501 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + E A+R + +L L L + + + E +L + I Sbjct: 502 RRTSESSAIRWRELMSKKEELAKLNLHSLPSILSLEANL--TYWQKEFHNITLQVLFEKI 559 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 L + T ++ + L ++ + + + Sbjct: 560 TTRGGILSWIMNSSEKTWYMQVLTTFFDFLKEETARNPLLSLKEFLSTIQKMLDNDVRLN 619 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 KII + + S+ L + + L Sbjct: 620 LQKIIHAEKG------------------------------VNFVTAHSSKGLEYRYVFLI 649 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE- 705 G N W ++ N++ +K + + + L + ++ Sbjct: 650 GCNSRQWEGQAERSFGFKIPSTITENVE-HDKEEDERRLFYVALTRAKEYLYISYPAKDV 708 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 N + SR+L L T L +T + Sbjct: 709 NEKELVCSRFLVELTEQETTKTTFVSLSDDAIVQYKLDILQFTEPPVIPLIDAVYLTELL 768 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + S + + + ++ P A Y +L + + GT H + + + Sbjct: 769 ESYQLSVTHLNKYLSCPIAFYFENMLMVP-----SARTASSGFGTAIHEALKDFFAAMLA 823 Query: 826 KNTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLEHEE--KIQSSIEK- 880 Q + F + +N+ H +I + + + E EK Sbjct: 824 DEEKRFPT--VQYLSEVFKLKLKNVHSHFTLIEYKNYETYGSTVVLPELYETYIGEWEKN 881 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD---------NPKKETAQK 931 + + +E G+ + G D+I++ S V++ DYKTG P ++ Sbjct: 882 VLLEHRID-NVEYKGVPIKGNVDKIEIHGS-DVNVIDYKTGKYASSKSKLLPPTEKEPNG 939 Query: 932 L-IDPQLSLEAAALK 945 Q+ ++ Sbjct: 940 GDYWRQIIFYKLLIE 954 >gi|229521161|ref|ZP_04410581.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TM 11079-80] gi|229341693|gb|EEO06695.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae TM 11079-80] Length = 1148 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 116/987 (11%), Positives = 243/987 (24%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + A +L + L L+ KL D + + L + Sbjct: 68 FIWQMFAQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + + Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVENYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340 LL + D L +++ I L Sbjct: 298 LNHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAMMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQHRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729 ++ + + + L + R +N + S + LL + D Sbjct: 712 RSRREESRYL-FIEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760 + L + R + + Sbjct: 771 ENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFELPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPMAAFGDLELAQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|260581776|ref|ZP_05849573.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae NT127] gi|260095369|gb|EEW79260.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae NT127] Length = 1121 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 115/979 (11%), Positives = 242/979 (24%), Gaps = 134/979 (13%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 F + D + + ++ + + +D Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 518 ELA-------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 L + Q T L SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQA---HSIEKWQEILTALLSDFFVRNED 612 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSST 627 +++ + +++ E + ++I +I + + Sbjct: 613 TSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFLAGK 666 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + L R + F + L G+N+ +P+ N F + Sbjct: 667 VNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LF 724 Query: 688 FEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737 E R + R +N P S + +LL +N+ + Sbjct: 725 LEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENVLTVIEHPMTAFSP 784 Query: 738 -------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 W + + + + + + +P Sbjct: 785 DNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVK 844 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSH 842 + + L + F ++ D ++ ++ +L +Q + Sbjct: 845 FFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNFADY 893 Query: 843 FEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGI 896 F + + + I + LE +EKI E +I +A++ + I Sbjct: 894 FRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNENQKI 953 Query: 897 HLTGFADRIDLLKSGFVDI 915 L G+ D + I Sbjct: 954 RLFGYMDALF--GDNSQVI 970 >gi|255523337|ref|ZP_05390307.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7] gi|296188270|ref|ZP_06856662.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7] gi|255512991|gb|EET89261.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7] gi|296047396|gb|EFG86838.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7] Length = 1148 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 80/261 (30%), Gaps = 37/261 (14%) Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + S S +++ +N P++ + + L D G+ HN++ K Sbjct: 770 YGRHLNISVSRLEKFVNCPFSYFIQYGLNAKERK--VYKLSSPDLGSFMHNVLQVFSSKL 827 Query: 824 INK-------NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-----FHKISHS--FLE 869 + ++ + +I+D E + R+ +I + +L Sbjct: 828 KEENLSWKEIDSEWCEREVSEIVDEILES-MPSSVFNSSKRYKHITNNAKRILNRSVWLI 886 Query: 870 HEEKIQSSIEKIFVNIPA--KMAIE--------SIGIHLTGFADRIDLL--KSGF-VDIT 916 E + E + + L G DR+D + + + I Sbjct: 887 TEHMKRGGFEPSGYELSFGNSGDFPPISLQLHSGETVSLIGRVDRVDSMNSEENTYLRIV 946 Query: 917 DYKTGDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 DYK+G K + QL + A L + Y +L D I Sbjct: 947 DYKSGTKEFKLSDVYYGLQMQLLIYLDAMLTELEKEMNKDAIPGGILYFKLD-----DPI 1001 Query: 975 TNDKKKYSADELSEKSLKNLI 995 K E+ E+ +K L Sbjct: 1002 VKTKGDIVDSEIEERIMKALK 1022 >gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] Length = 738 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 71/688 (10%), Positives = 169/688 (24%), Gaps = 112/688 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 + T +A +E+R ++ G KS L + + ++ + Sbjct: 53 RILAITFTNKAAKEMRERVEKLVGETAKSMWL---STFHSFCAKLLRFEIDGHFGY---- 105 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 R + + + +K L + P + I AKNL + Sbjct: 106 ---TRNFTIYDSTDQLT-VVKECVKILNLDEKNFPPRTILGTISEAKNLLYTASEYSRQA 161 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218 + + A+ + + ++L E NA +R Sbjct: 162 ADF-------------YKQKVAE----VFRLYEQKLKESNALDFDDLLSYAVRLLKEDAG 204 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + I++ + A L +A V+ D W ++ Sbjct: 205 IREKYQQRFQYILVDEYQDTNRAQYLLTKILAEKWRNICVV--GDADQSIYAWRGADIRN 262 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + ++ + Sbjct: 263 IIEFTRDYGD--------------------------AATIKLEQNYRSTKTILQAANAVI 296 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK---SALITAD 395 N + + + + + A E +EA +A + + + A++ Sbjct: 297 ENNEERPQKVLWTENEEGKKIIHYAAQTEHDEAEYVAGCIYNRHEIGGEPYGDMAILFRT 356 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R ++ +L R + + G + + L + D +++ ++ P Sbjct: 357 NAQSRVLEEKLMRHAVPYTMVGGTKFYDRKEVKDVLAYLRLLQNQQDSVSLLRIINVPKR 416 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G +I + + + + E Sbjct: 417 NIGKTTLE-------------------------------KIGAYAEDRQISFFMALTEAE 445 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + ++ I + + T H Sbjct: 446 EIDITARAKRSIADFTALMCDLAEKATQLNVFSLLEAVLHDTGYAALLEKEAAHEVQGES 505 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 G+ LS + D + + V E S + ++ Sbjct: 506 RKANVGELLSVAKDYLQTNEDG------NLQDFLENVALVSDVDSFSENDSNVTLMTLHA 559 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L F + L G++EG++P + + L + Q Sbjct: 560 AKGLEFPVVFLVGMDEGLFPNARTLMSTAAVEEERRLAYVGITRAERQLYVTNA------ 613 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLG 723 TR++ + SR+L + Sbjct: 614 ---VTRAMYGRITSYLPSRFLTEIPPHL 638 >gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 789 Score = 105 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 82/730 (11%), Positives = 185/730 (25%), Gaps = 89/730 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A EL+ + G + + + A+ + + Sbjct: 56 GEILAITFTNKAAGELKERVGALVGGR-MWEMWVSTFHSSCARLLRAEAGPQAGFDQNFT 114 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 RL+ + +L P LA I ++ E Sbjct: 115 IYDADDS-KRLLAMVAEELELDTNRFPPRM-----------------LAAKISDLKNELI 156 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219 E AL + + L + + ERL NA + + A Sbjct: 157 APEA--ALVGVEDPFDLV-----LGQVYRRYQERLALANAMDFDDLIMRAVELLQTNPEA 209 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV-------LPGLDCHIPTAIWN 272 +G +++ + A L+ + G V D + Sbjct: 210 AQRWRGRFRHVLVDEYQDTNHAQYVLIRELVGAGAGTQVGAETSALTVVGDSDQSIYRFR 269 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 T ++ + + + + Sbjct: 270 GATIRNIEEFERDFPNAR--------------------------TVLLEQNYRSTQNILS 303 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSA 390 + N E ++ + AD+E +EA +A + + K A Sbjct: 304 AANAVIAHNQGRREKRLWTQAGDGQQIIGYVADHEHDEASFVATEITELVRSGAKHGDVA 363 Query: 391 LITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + N +R + R + + G + + L I +D ++++ ++ Sbjct: 364 VFYRTNNASRVFEEAFIRHAVPYRVVGGQRFYDRREVRDIIAYLRVIANPSDAVSLSRII 423 Query: 451 KHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 P G + A + + +L + + Sbjct: 424 NTPRRGLGDRAQAQIAAWAGSRGQTFWDACQAAAGGAVAALAARSQRAVADFVAMIAGLR 483 Query: 511 RLSEEDKELAVLLVDH--ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 LV ++ T+ ++ + + V + V E Sbjct: 484 AELAAGDITVGELVARTVERSGYRAVLADSTDPQDGARLENLDELISVAVEYGELVAARE 543 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + + + E L ++++ ++ + D + + +S + Sbjct: 544 GGPVADGFAGELRVNLPEADENEGHA------KLRDFLEQVSLVADSDRLPEGGSQSGVV 597 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 ++ ++ L F + + GL EG +P + + + L + Q Sbjct: 598 TLMTLHTAKGLEFPVVFVTGLEEGQFPHLRSLGDPVELAEERRLAYVGITRAREQLYV-- 655 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 TR+LR + + SR+L + +RG W Sbjct: 656 -------SRSITRTLRGSPMTNPPSRFLLEIPPHL------VSWRRGGPDQAWAGFTRSD 702 Query: 749 TKQPHYKRPK 758 R Sbjct: 703 FGSVSAPRAA 712 >gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 1162 Score = 105 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 82/828 (9%), Positives = 189/828 (22%), Gaps = 91/828 (10%) Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS----PVGYQIALMRAEAEHL-- 222 LH + ++ F +++ L R+EA Sbjct: 326 LHMMATDRCRELTTALYIFGAAFQRHYQSLKESRGLLDYDDLIAVTNRLLARSEAAQWVA 385 Query: 223 --MKGTKGPIIIAGSTGSIPATARLMSTVANH----------------------PNGAIV 258 + G +++ + + PA L+ + V Sbjct: 386 WKLDNGIGHVLVDEAQDTSPAQWTLLLRLVESFFDGSDMPVAASSIASDTADMDIAPRSV 445 Query: 259 LPGLDCHIPTAIWNTITE----------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 D + ++ + + + S L + + Sbjct: 446 FAVGDFKQSIYSFQGADPKVLGENRTLLRNKAMAAEIDFRALSLSVSFRSTAPILGLVND 505 Query: 309 DVKRLGNVSN---EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + L + + R + P + + E P + + A Sbjct: 506 LIPDLDGIEDFVSHDLARRHKGGFVEVWPIIDAPVDEEKTEGFTPANIASMQGASAVAAS 565 Query: 366 NEREEAI-SIAIALRMSLDEN--------KKKSALITADRNLARRVKLELTRFGINIDIS 416 + I S D + L+ +V + L G+ + + Sbjct: 566 HLARTLKSWIGKRPLPSSDNDHMPRKIMAGDILILLRKRDVFFEQVLVALQEQGVAVAGA 625 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + L + L +L + +D + +A L+K PL + + + Sbjct: 626 DRMRLVDQIEIQDLLALGDVALLPDDDLQLAALLKSPLFGISEAQLFDLAHDRGSHSLFR 685 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + + L + + + + + + Sbjct: 686 QLMRYLGSNDPLGRIADRLEEWCRLVDGGSVFSFFSKVLVDGGRDKFRARLGSSVDEALD 745 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + + G T + + + + I Sbjct: 746 HFLAVAQSYGESGGVSLTAFLAAVRAGGGDVKRDM--------DAGNVDEVRVMTIHGAK 797 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 ++A + D++ + + L L Sbjct: 798 GLEAPIVILPDMLRH----SVPHSPLITGEDQRFIYWEAGSHLRPPFLETARQKASDLRA 853 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + ++ L + +T R + Sbjct: 854 EEDNRLLYVALTRARDGLVIGGWEKRNSRWLENSPYSRIKAYFTEHKDVVEDVDGVLRHI 913 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 + D + P P P +A+P S Sbjct: 914 A--KTVSEADSVFPSMPDDDAAMRVPDIASEPADTSWLHHPAPDLPPDARPLRPS----- 966 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 +P +YA L + RG L H + L ++ + ++ Sbjct: 967 ----EPANLYAPHPLGFGVTDSRTQAM-ALTRGRLAHRLFEMLPTVPQDQRNTVADRMIA 1021 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + L P + L +P + G+ Sbjct: 1022 TV-------DMLSPAQGAQ----LKNEVFTILNDPRFGNLFTPDALAEVPVTGMVRDRGV 1070 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 +G DR+ + V I D+KTG +++ + Q++L AA + Sbjct: 1071 --SGQIDRLFVGDD-SVIIADFKTG-IANEDSPPETYQRQMALYAALI 1114 >gi|315634706|ref|ZP_07889990.1| exodeoxyribonuclease V gamma subunit [Aggregatibacter segnis ATCC 33393] gi|315476654|gb|EFU67402.1| exodeoxyribonuclease V gamma subunit [Aggregatibacter segnis ATCC 33393] Length = 1131 Score = 105 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 107/898 (11%), Positives = 214/898 (23%), Gaps = 136/898 (15%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 E+ +L + +PL P T+ V + Q L+ + E G + Sbjct: 11 EVQKDILVELIQRQPLSNPLQPE-----TVLVQSPGMAQWLQLQIAEQKGIAANFA---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + + A+ L + + + L RLI + + S+ Sbjct: 63 PMPASFIWQLYAENLPDVAQSNQFNKNAMMWRLMRLIPQYLQQEAFHPLRH--YLAHSVQ 120 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW------------------- 180 LA +AD+ D W + Sbjct: 121 SEQFKLYQLAGKIADLFDQYLVYRPNWIAAWETHRDAEIRHQIETQLNLNHDRLSAQIEQ 180 Query: 181 ---WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG 237 W + + + L+ E+ + I G Sbjct: 181 NIAWQASL--WRALVQAVKTETGLDWVQHRAHLHQLLLEKLRENRQLFLPERLFIFGIPA 238 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN------------------------- 272 A + ++ + + + I + Sbjct: 239 LPKAYLEIFQAISAYCDVHLFFNNPCQEYWGDIVDPSFVEKLALRTRTDYFNQANKPLLS 298 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 T Q L + + R+ L + I L Sbjct: 299 AEQIAQAERQWEVTYAQEKLQVGNPLLASWGKLGRDFSYLLTQLEPNEISAYAEIEPRNL 358 Query: 333 PPDTSDMRNTDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---- 387 + P N Q+ + + E + L L EN Sbjct: 359 LSQIQHQILHLMPSGSEPLNYQENDRTLTFHSCHSTMREVEVLQDYLLHLLQENPHLTPK 418 Query: 388 KSALITADRNLARRVKLELTRFG------INIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 ++ AD + + R I IS + + SLL + Sbjct: 419 DIIVMVADIDKYTPYIRAVFRQHATPQTAIPFSISDNKLSENDVIIAGFLSLLQLKESIF 478 Query: 442 DFMAIATLVKHPLAKFGFP-EKYLSRAKNA-----------LELVALRGNKNSYDIMDLK 489 + L+ P + F E + A + + + Sbjct: 479 SAEDVLALLDVPAIRQRFNIELQDLAQIRDWVKNAGVRFGLEKQPAEPHGETQNNYNSWQ 538 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEE-DKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 + + + WQ L + L L + + I L + Sbjct: 539 AGLERMLLGYALREENGIWQDSLGLDNSFGLKGQLAGQLAEFIAALSDWFKTLQQR---Y 595 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 S++ W + +T L++ + + + E + + +D+ Sbjct: 596 SVAQWQQHLLTLTDRFFAVTTETEETLFY------IKDVIQQFAEQLQDVHFDERLAVDV 649 Query: 609 ITRLIDG---ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ G E + + L R + F + L G+N+G +P+ N F Sbjct: 650 VADVMIGALEENPNHYRFLAGKVNFCTLLPMRSIPFKVVCLLGMNDGEYPRQQPPNSFDL 709 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVL 722 + E + L + R +N S + +LL Sbjct: 710 MQYHRIKGDRARRDDDRY--LFLEALLSAQEYLYISYIGRSISDNQEREPSVLVSQLLDY 767 Query: 723 GGTDFFDNLKKRGQCYLDWT--------------RKLDYTTKQPHYK------------- 755 +NL G+ + K D T + Sbjct: 768 ----IVENLPNEGKDWRALLVQQHGMTAFSRKNFEKNDRTFSPSFAQQWLPLVNSQSNQA 823 Query: 756 -----RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 +P Q FS + + +P + R L ++F + D + Sbjct: 824 LSDFIQPAIAQEDFEQETEIEFSRLVAFVKNPVKFFFERRLGVNFSEQEESIADSENF 881 >gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 1279 Score = 105 bits (260), Expect = 7e-20, Method: Composition-based stats. Identities = 113/983 (11%), Positives = 227/983 (23%), Gaps = 156/983 (15%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI----IKSLGD 83 L E + A + I PT+ A +R + + ++ P + Sbjct: 16 HHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAAYAFDL 75 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + + L +S ++ + + L+ + + + Sbjct: 76 LKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELLANHAEGIAP------GPAWPDVLRDAL 129 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + D D + + ED+HAL E W A L N Sbjct: 130 ATRGFRHEIRDFFDRMAEYDLTAEDVHALATEHNQPAWHALAQLHTEYRAV--RALRAKN 187 Query: 204 ASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------ 252 A P ++ L E + I+I P+ RL+ +A Sbjct: 188 AYDPAVLINDACRLLLRAPEFLAEERRRYDLILIDDVQELSPSIYRLLRLIAAEVAPADA 247 Query: 253 -----------PNGAIVLPGLDCHIPTAIWNTITEK----STNITSSNTTYSTHPQYSLA 297 G V+ + S T + Y L Sbjct: 248 AHLTETHPDLFAEGPRVVMTYSDEAVVQGFRGARPDLVTTLQASFPSMRTRTLTTSYRLP 307 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRS----------------MVISKSFLPPDTSDMRN 341 L+ L + + P + Sbjct: 308 ALMMPLVADIRRRLPRYTRFVPLTAEQEGTKNGAQEGSKNGAPATFGRINTTPADEALTW 367 Query: 342 TDILEN-----------KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKK 387 E + + + V + ++EA IA L + + Sbjct: 368 GAADEPLLHLGADGKILDPAHYRTAPAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYR 427 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS-------------- 432 +SA+I R++ L+ GI SA + P+ Sbjct: 428 ESAIIVRSSADVARIRRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLVYARKRGEK 487 Query: 433 -----------------------------LLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 + + D + +PL Sbjct: 488 ALNPAVHMPAAEGAEAAERGGYEALSASEAEELMRRSLDDVIAEESRANPLGGAQSAITL 547 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L+ + +R + ++L R + + H ++ E + Sbjct: 548 LTSRLGGASSMDVRRLRQQLRSIEL-QSGGHRPSDDLLLGALLHPETLPEEGVGRAVHRI 606 Query: 524 VDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FEEEG 581 + L ++ S K VT + D NL Sbjct: 607 AAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRGAGPDADAAHRNLDAMIGLF 666 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ G+ + I+ D+ + V+ + IL + ++ Sbjct: 667 EAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQ-----DAVEILTPALAAGQSW 721 Query: 642 DTLILGGLNEGVWPKNTAKNPFL--------------------------------SRVMQ 669 T+ + GL EG WP T + L ++ Sbjct: 722 RTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPARIR 781 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 S ++ + L+ T ++ P ++ + Sbjct: 782 SYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAENESPEVP 841 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + R L T + S E + L + Sbjct: 842 ITRVRRPATLRSLVAELRRTLVEESLNAMRAEDAQDGAPAGSMPEEEALTPEASTYRLDA 901 Query: 790 ILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 + + P D L TEL+ + E + ++ + + E Sbjct: 902 ASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAEDENHSEEPAEE--QAEK 959 Query: 848 LPPHIDIIWRHLFHKISHSFLEH 870 + I S L+ Sbjct: 960 PSRRTIALSPSRLETIHSSPLDW 982 Score = 77.3 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 69/588 (11%), Positives = 157/588 (26%), Gaps = 66/588 (11%) Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G+ + +++L++ A+ + + SR A R Sbjct: 598 GVGRAVHRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRGAGPDADAAHR 657 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + + +++ + ++ D A + ++ +TP + Sbjct: 658 NLDAMIGLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAA 717 Query: 538 KTNKNS----------------TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + LS D T L L+ ++ Sbjct: 718 GQSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPP 777 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + S ++ +T + + V+ + F Sbjct: 778 ARIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAENES 837 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + + + ++ L ++ L ++ + A D A Sbjct: 838 PEVPITRVRRPATLRS------LVAELRRTLVEESLNAMRAEDAQDGAPAGSMPEEEALT 891 Query: 702 SLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 ASR L RL D++ L L R D+ + H + Sbjct: 892 PEASTYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAEDENHSEE 951 Query: 757 PKPFPP--LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P + S S ++ + + P + + GTL H Sbjct: 952 PAEEQAEKPSRRTIALSPSRLETIHSSPLDWL------VSAARAEAQTDLSRSLGTLIHA 1005 Query: 815 IITELIKKRINKNTPEINHLM---------KQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 I E + + ++ + + D + + + ++ Sbjct: 1006 IAEEYPTGTLEELQTALDERISSLGVPARKEDETDEEYRERVPWESYALYE--RAKRMIL 1063 Query: 866 SFLEHEEKI--QSSIEKIFVNIPAKM----------AIESIGIHLTGFADRID-----LL 908 + + + + + V + + + LTG DR++ Sbjct: 1064 RLSYYYRQHMGDAGWQNLGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTAPAED 1123 Query: 909 KSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + I D KTG + P + PQL+ A++AG+ Q++ R Sbjct: 1124 GTRRYAIVDLKTGKSKPTGSEMETH--PQLAAYQIAVEAGAGEQLEER 1169 >gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] Length = 1094 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 98/851 (11%), Positives = 210/851 (24%), Gaps = 139/851 (16%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPAT 242 L + + E +A R A L + +++ + A Sbjct: 245 LLPLLERFAEIRAADSALDFADQVSLAARVAREVPAASALARRMHRVVLLDEFQDTSVAQ 304 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 ++++ + G D W + S ++ P Sbjct: 305 LQMLTDLFG--PGHAACAVGDPQQAIYGWRGASAASLAGFATAFAAPEQP---------- 352 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 ++R N + + + S + P ++ Sbjct: 353 -VLQRTLSTSWRNDEAVLAAANRLASPLRSAETGVTIPELQ------PRPGAGEGACEIL 405 Query: 363 EADNEREEAISIAIALRMSLDENKKKS-----ALITADRNLARRVKLELTRFGINIDISA 417 EA +ER EA++I + E ++ + A++ R + L R G+ + + Sbjct: 406 EAADERAEALAIGRWILERRAEQEEDAPPASAAVLVRARRQIPALVDGLERSGLAVAVVG 465 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 L + + ++L A+ L+ P + G + + LR Sbjct: 466 LGGLLHRPEVADVRAVLECAHDPGRGDALMRLLTGPRLRLGARDLAVLGRWRDRLGARLR 525 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-------------- 523 + + D V A S LL Sbjct: 526 RDGETPGGQDEAESVSLVDAVDDLPPEDWTDPSGRGLSGTGRERLLQVQQILREMRRLLP 585 Query: 524 ---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC--------- 565 +L L+ + + + + D + Sbjct: 586 LPLPDLVTAATRLLDVDLALLESEPDSRALADLEAFRDHAAAFDRTARRGGLGAYLDLLE 645 Query: 566 --LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 DE L E +++ + + ++ + + + + ++ Sbjct: 646 ISEDEEAGLAVTAAPEAAHDPAAVTIVTMHSAKGLEWDLVAVAGLTEGTVPSYDLRRAKT 705 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL-----SRVMQSDLNLKTAE 678 + + + + L + + + E Sbjct: 706 DEAGRVRVPADGWLGTLANAAVPTALRGDADTLPELAWAEADTQVDAESLIQEFRFAQGE 765 Query: 679 KYIGQAAHDFEMA--NGTRHLIYTRSLRENNIPTIA--SRWLQRLLVLGGT--------- 725 + + + +A R L+ T + + + SR+L + L Sbjct: 766 ESLREDRRLMYVAVTRARRRLLLTSAAWRTGLSSARPRSRYLTEVTDLVPESFRTVQEVP 825 Query: 726 -------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK-------- 758 + + + + D + + Sbjct: 826 ETNPLESERPQAQWPPRPGEPEQARARAAALLAEVAGQDDAPADPELAELVRRAVVDLEQ 885 Query: 759 -PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 PP+ P S S++ Q P A + L ++ RGT FH + Sbjct: 886 QAAPPMVHSPPRLSASQVVQQARSPQAAALDLLRPLP-----RRPSAAAARGTAFHAWLE 940 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + ++ L D + +F E +S Sbjct: 941 SRYDSATLLDLEDVLDLEDTPADEAETDH--------------RALREAFTASEWAERS- 985 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-----VDITDYKTGDNPKKETAQKL 932 + V P I I + G D + G V + D+KTG P+ ++ Sbjct: 986 --PLVVEQPVHTRI--GQIAVRGVIDAVFADPEGTDGSEGVIVVDWKTGRVPRPAQLRE- 1040 Query: 933 IDPQLSLEAAA 943 QLSL A Sbjct: 1041 RALQLSLYRLA 1051 >gi|222054489|ref|YP_002536851.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. FRC-32] gi|221563778|gb|ACM19750.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. FRC-32] Length = 1087 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 112/927 (12%), Positives = 262/927 (28%), Gaps = 106/927 (11%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V +K + L E + G + + ++ ++ + P +S+ Sbjct: 35 IVVQSKGMQRWLAMELAKNLG---VWANAEFPFPNALIDQLFTSVIPNLTAPPEISSFHP 91 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 + R++ + L P + LA +AD D D Sbjct: 92 DVLTWRIMEVLPGYLEQADFQPLAAYLAEDPAGL-KRLQLAGVIADTYDQYTIYR---SD 147 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG 228 L A W + W E + + ++ +L+ L +G + Sbjct: 148 LLASWENGAADGWQASL---------WRELVK-----NSSHHRASLLMQFRRQLGRGKQK 193 Query: 229 PI------IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 P+ + G P +++ +A H + L I T Sbjct: 194 PVDLPQRISLIGIPTLPPFHLEVLTAIARHTEVNLFLLNPCRQYWGKIVPERTLPRIGQQ 253 Query: 283 SSNTT-YSTHPQYSLAKLLDFLDIKREDVKRL----GNVSNEMYGRSMVISKSFLPPDTS 337 + + + + + L F R+ + L G V+ E + Sbjct: 254 EFDFSGGADYFETGNPLLASFGRTGRDFFETLINDCGEVAPEESFMEPDGNCLLHAIQGD 313 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALIT 393 + D + + + + + E + L LD++ + ++T Sbjct: 314 ILDLRDRRSEQKSIVSCTDDSLRIHSCHSPMREVEVLYDQLLHRLDQDPSMSPRDILVMT 373 Query: 394 ADRNLARRVKLEL----TRFGINIDIS-AGIPLSTTLHSSI-LTSLLNAIFKLNDFMAIA 447 D + R I S A L ++ ++L+ + Sbjct: 374 PDIESYAPYISAVFGSPERAEEKIPFSIADRSLRREGEAAETFLAILDLCGSRFTVTQVL 433 Query: 448 TLVK-HPLAKFGFPEKYLSRAKNA---LELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 +V+ P+ + V + ++ L S + + Sbjct: 434 DIVEAAPILRRYGLATGDLDLIRQWLSATNVRWGIDAHTRSEHGLPSFGENSWRAGLDRL 493 Query: 504 HVPHWQSRLSEEDKELAVLLVD-------HILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + + + + T + +WT Sbjct: 494 LLGYAMAGNDNRFFAGILPYDHVEGSDTVVLGRFLELCETLFRTAARLTKPRHLHEWTGE 553 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 T + + L E++ L + + GS I++I + + Sbjct: 554 LRTLITTFFAPDD-----LNDEDDIGGLLRVIDLLESCGSMAMFTGAVGIEVIRSWVGEK 608 Query: 617 TVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQS 670 + + + L R + F + L G+N+GV+P+ K + + + Sbjct: 609 LDRQQRGFGFLTGGITFCAMLPMRSIPFRVICLLGMNDGVFPRRNRKSGFDLMAAAPRRG 668 Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFF 728 D N + ++Y+ A + + H + R +N S + L+ F Sbjct: 669 DRNQRDEDRYLFLEA----ILSAREHFYISYVGRSIKDNSLLPPSPLVSELIDYCSKSFT 724 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP----------------------------- 759 ++ +D+ + Y+ P Sbjct: 725 VADREDDDKAAGDALCIDHPLQPFSYRYFCPGNGLLFSYSRENRLAAFAAPPAAEPASFF 784 Query: 760 -FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P + +E+ +P +R L + + + + + +L H Sbjct: 785 TRPLPVVTETVINITELVDFFANPCRHLLQRQLGIF-LELRHETMEEDEPFSLNHLCKYA 843 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 L ++ + + + + + + + + +LPP + + + S + + Sbjct: 844 LEQEMVARLVEGEDLSVHRTVAAS--RGDLPPGEPGLVIYDKLAAAASEFAAQVAAVAPG 901 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRI 905 + ++ IES G+ L G +RI Sbjct: 902 PPLPT---LELQIESCGVRLVGRIERI 925 >gi|262191392|ref|ZP_06049581.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae CT 5369-93] gi|262032723|gb|EEY51272.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae CT 5369-93] Length = 1148 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 114/987 (11%), Positives = 246/987 (24%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAISWRLMELLP----KLLDRTEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRALGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ----------------------- 293 ++L H I + + Q Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTVGSEVSPLKGDVEHYLQESLH 297 Query: 294 ---YSLAKLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348 LL + D L +++ + S L +D+ + ++ Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFASSSHKPSITAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQVISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729 ++ + + + L + R +N + S + LL + D Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760 + L + R + + Sbjct: 771 EHLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] Length = 1171 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 64/604 (10%), Positives = 142/604 (23%), Gaps = 49/604 (8%) Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F LL + L + RLL A + L + P P Sbjct: 111 YHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLREA--------PGPYPALTRGF 162 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190 L +L + + L + A L Sbjct: 163 SDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAETRLSNDQLRKVPEAAAARLALTE 222 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARL 245 + + + R EH + +++ + A L Sbjct: 223 LTGRYRAAKRSRDLIDFGDQLALSARLAREHPEVGEALRAQYRVVLLDEYQDTSVAQRVL 282 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 +S + G V D W + + + + + L Sbjct: 283 LSALFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPRHFPHPDGTPARRQSL------ 336 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 S +++ + + + P + V Sbjct: 337 -----------SENRRSGGRLLALANDLAAPLRALHDGVEALHAPAEKAADGFVRCALLP 385 Query: 366 NEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLST 423 EE +A ++ + A++ R++ L I +++ L Sbjct: 386 THAEEIDWLADSIAHYVRTGTSPGEIAVLCRTAGDFARIQAALVAREIPVEVVGLSGLLH 445 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L ++ + ++ L+ P + G + L + L A + Sbjct: 446 LPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLL--AGGRSGEDD 503 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 L + V + + D E + + L Sbjct: 504 PDRKLATAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSAGARARLARLGRELRELRR 563 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + + ++ +V L E + + T A Sbjct: 564 ALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQFLDIAASFAATEPAASLLAF 623 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + +T+ +L +++ L +D + + GL +P + + F Sbjct: 624 LGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVVAVPGLVAKQFPSDRGREKF 683 Query: 664 LSRV 667 +R Sbjct: 684 TARA 687 Score = 60.3 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 80/776 (10%), Positives = 179/776 (23%), Gaps = 50/776 (6%) Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 G I A IP +S + + P A + + ++ T Sbjct: 416 RTAGDFARIQAALVAREIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGP 475 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 A+LL +D R + E + ++S + + Sbjct: 476 RWRIGARDLALLGRRARLLAGGRSGEDDPDRKLATAVEGVDPAEIVSLADAVDTFVEGGP 535 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARR 401 + E + AL L + + +T Sbjct: 536 DAEDGLPFSAGARA-------RLARLGRELRELRRALADPLMDVLHRVLAVTGLDVELSA 588 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 L ++ + SLL + L + + L Sbjct: 589 SPNALAARRRETLGQFLDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTV 648 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 K L+ K + + L + ++ T D Sbjct: 649 KVLTAHKAKGLEW------DVVAVPGLVAKQFPSDRGREKFTARASVLPHPLRGDAATLP 702 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + + +T + L + Sbjct: 703 DVPEWTAKGLKAFQDGMRAHQATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAF 762 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 T A D L + + + + + Sbjct: 763 LTALHDHCVRGHGEIERWAEPPGPGDENPALRQSDPLPWPLPLDPGAHARRREAAARVEH 822 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM-----ANGTRH 696 +L + ++P+ + G A D G Sbjct: 823 HLGLLQSRRATATTEEPPEDPYDPEWPPEPEDEPEPRPEPGDEAPDPYEEEPDPYEGGPD 882 Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + + P + D + + W R LD + +R Sbjct: 883 AYESAPDAYEDGPDPYGDDAAPRVPAPAAHGDDLTPEESRLLDSWDRDLDALEGE--LRR 940 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P + + +++ +L DP + + P + RG FH + Sbjct: 941 AAASVREVPLPPSLTATQVLRLAEDPDG-----LARDLARPLPQAPKPAARRGARFHAWL 995 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + + + E + ++ +F + Sbjct: 996 ERRLTAGHEQPHLPLADEGDTEAREDAEISDDLD---------LEELKEAFERTAYAHRP 1046 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRI---DLLKSGFVDITDYKTGDNPKKETAQKLI 933 + V +P ++++ + G D + D +I D+KTG + + Sbjct: 1047 AHR---VEVPFQLSLAGR--VVRGRIDAVYASDEDGRRRYEIVDWKTGRDRTRADP---- 1097 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 QL++ A ID ++A ++ ++ + + +E+ Sbjct: 1098 -LQLAVYRLAWAE--RHGIDPEEIA-ATFVFVRTGEAVRPGRLPGRAELERLFAEE 1149 >gi|255027576|ref|ZP_05299562.1| hypothetical protein LmonocytFSL_16652 [Listeria monocytogenes FSL J2-003] Length = 520 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 85/259 (32%), Gaps = 30/259 (11%) Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + S S +++ + + YA+ LKL+ HF+ D G +FH + + + Sbjct: 188 GETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQ--LQAVDMGEIFHGAMEWISAELK 245 Query: 825 NKNTP----------EINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHS--FLEHE 871 N ++ L + + E L ++ +I + +E Sbjct: 246 RNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNE 305 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLLK-SGF--VDITDY 918 + S+ + + + + + + L G DRID+ + + I DY Sbjct: 306 QAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDMAEQDDRTFLRIIDY 365 Query: 919 KTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDC-RKVANLFYIRLKQKFKIDCITN 976 K+ + + Q+ + + I + A + Y + ++ Sbjct: 366 KSSSHDLALTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKEL 425 Query: 977 DKKKYSADELSEKSLKNLI 995 + + + +K LI Sbjct: 426 SDEAIAKELQKSSKMKGLI 444 >gi|292487195|ref|YP_003530067.1| exonuclease V subunit gamma [Erwinia amylovora CFBP1430] gi|292900429|ref|YP_003539798.1| exodeoxyribonuclease V subunit gamma [Erwinia amylovora ATCC 49946] gi|291200277|emb|CBJ47405.1| exodeoxyribonuclease V gamma chain [Erwinia amylovora ATCC 49946] gi|291552614|emb|CBA19659.1| Exonuclease V gamma subunit [Erwinia amylovora CFBP1430] Length = 1122 Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats. Identities = 97/948 (10%), Positives = 227/948 (23%), Gaps = 110/948 (11%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L S + V + Q L+ E G + I + + F L P Sbjct: 28 DPLCSEVVLVQSPGMAQWLQMSLAEQFGIAANI--DFPLPASFIWDMFVRVLPDI----P 81 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S + +L+ I + LP + LS LA +AD+ D Sbjct: 82 KESAFNKSSMSWKLMAILPDMLPGEAFTML-RHYLSDDNDKRKLFQLASRVADLFDQYLV 140 Query: 162 EEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 +W + + + L A +T RL + + Sbjct: 141 YRPQWLNGWEKGRLTEGLGEAQIWQAPLWAALVEYTRRLGQPEW-HRANLYQRFISRLEN 199 Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + I G + P + + + H + ++ + I + Sbjct: 200 SSSRPANLPDRVFICGISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIQDYGFLAR 259 Query: 279 TNITSSNTTYSTHP-------------------QYSLAKLLDFLDIKREDVKRLGNVSNE 319 P Q + LL D L Sbjct: 260 LQSRHRRHYLDGRPVPQFRDAENASSLFNDAGEQQTSNPLLASWGKLGRDNLYLLAQMEP 319 Query: 320 MYGRS--------------MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + + + ++ + + + Sbjct: 320 NEVFAFVDIEPTNLLQTLKRDLLELEDHAVIGLQKSEWENSRSKRILAADDRSLVIHLCH 379 Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDIS 416 + + E + L + ++ + ++ AD + + + IS Sbjct: 380 SPQREVEVLQDRLLAMMADDTTLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPFAIS 439 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELV 474 SLL+ + L++ P +F E+ L ++ + Sbjct: 440 DRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLRLLRHWVAES 499 Query: 475 ALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 +R + + +L + + + L+ + Sbjct: 500 GVRWGLDDDGVRNLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLIAEL 559 Query: 528 LQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + L+ + + W L L + + + L E + Sbjct: 560 AGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFISDAETEAALALIE--EQWQQ 617 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + ++ G D ++ +D + + + + + R + F + L Sbjct: 618 VINYGVQAGYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKVVCL 676 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE 705 G+N+GV+P+ F +M L + E N + L + R Sbjct: 677 LGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYIARS 734 Query: 706 --NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYL 739 +N S + L+ + + + Sbjct: 735 IQDNTERYPSVLVSELVEYISQSFCLAEDSARDADASAEAVVKHLHHLHSRMPFAVENFH 794 Query: 740 DWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARRILK 792 + + + PP S + + + P + L Sbjct: 795 PQAEFRSFAAEWLPAASGQGTAHPPFMQSLPEESETVIDFDRLVRFWRHPVRAFFSLRLG 854 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + F PD + + + + + K Sbjct: 855 VSFQLEETGLPDAEPF--SLDGLSRYQVNSLLLNSLIDGKEGGKLYARQRAAGALPYGAF 912 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ + +++ E ++++ G L+G Sbjct: 913 GELFWQEQEAEMSELAARVREQRAAAE------SWEVSLTPGGFTLSG 954 >gi|221134828|ref|ZP_03561131.1| exodeoxyribonuclease V, gamma subunit [Glaciecola sp. HTCC2999] Length = 1147 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 77/711 (10%), Positives = 181/711 (25%), Gaps = 56/711 (7%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI 106 TI V ++ L E + TG I V E ++ + + P S Sbjct: 36 TTIVVESQGMQHYLNMEIAKKTGLSMNID-----FPLVSREIYSICRSILGDKVPQDSPF 90 Query: 107 QRLLELARLILIWRNK--LPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 +R + + I ++ + D P LAK LAD+ + + Sbjct: 91 KREYLVWNIFTILQDPGFISDPRAAYANAYWQEQPEPLLQCFRLAKQLADVYEQYLIYRE 150 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTE----RLVELNASSPVGYQIALMRAEAE 220 W W L + W + +LV ++ P + A + A Sbjct: 151 DW----------LTAWEQGNLKGLNDTLEPWQQLIWEQLVAIHPDHPAALRAAAISQLAT 200 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----TITE 276 H K I I P S VA + + + + + Sbjct: 201 HQAKLP-KSITIFAVNTLSPTQIEFFSAVAQYIDVYLFFLNPCSQYWGDVVSDKVLLRER 259 Query: 277 KSTNITSSNTTYSTHP-QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 S I +HP +L + L + +D+ ++++ L Sbjct: 260 LSKGIDELKAEDISHPILANLGQQGRGLFNQLQDINYPDMTDSQLFIAPTADDAPSLLKQ 319 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + + + + + + + + E ++ L L D + Sbjct: 320 VQADIASAHVTPVTLHPEDIDASIQIHSGFSAIREVQTLHDELLRILTADPDLQPHDILV 379 Query: 392 ITADRNLARRVKL-ELTRFGINIDIS---------AGIPLSTTLHSSILTSLLNAIFKLN 441 + PL++ + +L+ Sbjct: 380 MCPSVEEYAPFVNSIFRPSYKPAQTDSPQLVCSIADRAPLNSEPTVMMFLDMLSLPDSRF 439 Query: 442 DFMAIATLVKHPLAKFGFP--------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVL 493 I ++ P + + + D + Sbjct: 440 SVTKIIDYLRIPSVQKNLNLTEDELTLCINWLSMSQIKWGLNQAHKASWLDNEAVTEHYT 499 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + H + + ++ + + + L+ ++ L+ Sbjct: 500 WEWGLSRLALGCLHSEMQEHHDEFAYVDAVEGLNSRILGKLLVLVNRLSTFRAQLNGDKS 559 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + LQ + + + + S+ + + + ++ + Sbjct: 560 IQEWERLLQEMSQSLFGETST--QLRAQQMIEQTISQFSKQVQTAGYESPIGLALVRESL 617 Query: 614 DGETVKPKIEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 + P + + R + F + + GLN+G +P+ N Sbjct: 618 SDKFSTPDALNQFLTGQVTFSSMVPMRSVPFKMICILGLNDGAFPRIALPNSIDLIAQSE 677 Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719 + + + + + +L + + +N S +Q L Sbjct: 678 KQRGDRSRRNEDRYLFLEALISARDYLYLSYQGQSAKDNQTIEPSLVIQEL 728 >gi|87124722|ref|ZP_01080570.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. RS9917] gi|86167601|gb|EAQ68860.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. RS9917] Length = 1117 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 99/898 (11%), Positives = 231/898 (25%), Gaps = 59/898 (6%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIK 79 L L E R P P V + V T + L + + G + + P + Sbjct: 10 AEWLARILAEQLRLAPPAPFD--EVEVMVNTWPTSRWLGEQLAAVNGISALVRFPFPGSR 67 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 V A + + + R+L++ L + + ++ P Sbjct: 68 LRQLVRSLDGDASQADADDPWRAEGLVWRVLDV--LPDLLAEAEAEPLRQWMALHPSGPG 125 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHA-LKNEKYGMWWLLAADFLKIASKYWTER 198 + LA++LAD ID + L L A + + + Sbjct: 126 QLNRDRWLLARSLADAIDDYALYR--PDALERWLHRSGPDPDLPTALQWQPLLVQQLARH 183 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 V + +RA A + + G + P L+ ++ + + Sbjct: 184 CPVPPFGLQVRRAVQRLRAGAAPTECLP-RQLRLFGISSMAPVQVELLQALSGVIDVQLF 242 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 L + + + L + + + + + Sbjct: 243 LLTPCPDLWQRSGQRRRRLGDHWQAPLDGSWLLEAPRLEAMAGRMGAEFQLLLEGSGDCQ 302 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI----------QKCFSDVALIEADNER 368 + + + + R +LE + Q + + + Sbjct: 303 LGERTNGDLFAAPMTSALEANRRPSLLEQLQEQLVVTQDTDLHHQVGDESLRFLASPGRW 362 Query: 369 EEAISIAIALRMSLDE----NKKKSALITADRNLARRVK------LELTRFGINIDISAG 418 E + + L + ++T + + T + ++ Sbjct: 363 REVQLVRDQILQWLAADPTLQPRDVLVMTPQIDHFAPLLSSVFNDAAATGVALPWRLTDR 422 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVAL 476 + + LL + + L+ +P + L+ Sbjct: 423 SQQDSPGLCQSVLQLLEMAGERLTATGLEQLLANPALQAAQQLERSEVEAIHRCLQRSGF 482 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV--DHILQCITPL 534 R + D + L + V + + D + + + + L Sbjct: 483 RWGLDGRDRRGDPTHSLRWCLDRWLLGLVFDDATTVGNGDTAPFSDGLTPEQLGRWWPLL 542 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + SDW L +T L+ + D ++ + + +T Sbjct: 543 DRLARWLDRLGQPRRCSDWIPLLLTLLEELFGDGGAWS---EEKQAVLAALEGWRERADT 599 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + + ++ + L +S + I R + +IL GL+ + Sbjct: 600 CALLLEPSVVVAVLREALSRDS--GRFGHRSGAVTISALEPMRAIPHRVIILMGLDASSF 657 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN-NIPTIAS 713 P+ + + F Q L + A + + +HL+ + + R+ T+ Sbjct: 658 PRQSERPGFHLLEQQRRLGDPSPSDQDRY-ALLEALLSARQHLLISWNARDERRGETLPP 716 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL---------E 764 + + + LD T QP + Sbjct: 717 AAPVQQWLSLLEEQLGPAAMTALRLQPAANPLDPTNFQPQAPGVLASCDQRLLLARRCLD 776 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII-----TEL 819 R S + +D A+ + ++ D G L H+++ Sbjct: 777 QALRGERGSGVTASASDDLVGLAQPLHWTLSDATAEEANGSLDHGLLDHSLLDAERIERW 836 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHID---IIWRHLFHKISHSFLEHEEKI 874 + E ++ ++ + E L + + + E E Sbjct: 837 LAAPQRVWLEEQGLRPQEWLEPIEDFEALDLAERDRQALLQERLQHLIDQLPEAENGR 894 >gi|145295633|ref|YP_001138454.1| RecB family exonuclease [Corynebacterium glutamicum R] gi|140845553|dbj|BAF54552.1| hypothetical protein [Corynebacterium glutamicum R] Length = 278 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%) Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 +P S S P R I +L +GTL H ++ + K Sbjct: 12 PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTV-----AQVKGTLVHAVLEYMHKLPR 66 Query: 825 NKNT-PEINHLMKQIIDSHFEKEN-LPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEK 880 + P + +K E++ L + + F S + L E + + Sbjct: 67 EEREYPAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDA 126 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 + + G+ + GF DR+D +G V + DYKTG PK + +Q+ Q+ Sbjct: 127 TECEMYLDTVLP-NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA-QFQMLFY 184 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEKSL 991 A F++I + L Y+++ ++ + + +L K Sbjct: 185 ALVYWR-MFNEIPAQ--LRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKIE 234 >gi|16272879|ref|NP_439102.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae Rd KW20] gi|260580031|ref|ZP_05847861.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae RdAW] gi|1169573|sp|P44945|EX5C_HAEIN RecName: Full=Exodeoxyribonuclease V gamma chain gi|1573962|gb|AAC22596.1| exodeoxyribonuclease V, gamma chain (recC) [Haemophilus influenzae Rd KW20] gi|260093315|gb|EEW77248.1| exodeoxyribonuclease V, gamma subunit [Haemophilus influenzae RdAW] Length = 1121 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 116/981 (11%), Positives = 249/981 (25%), Gaps = 138/981 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYILVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDVPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLVLLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---K 624 +++ + +++ E + N ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFNEELQAEVIADVITMQLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 E R + R +N P S + +LL +N+ + + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 742 TRK----------LDYTTKQPHYKRPKPFPPLEAQPRTYS----------FSEIKQLIND 781 + TK + T + + + + Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENLEKIEEVELDALVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQII 839 P + + L + F ++ D ++ ++ +L +Q Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNF 890 Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893 +F + + + I + LE ++KI E ++ ++++ + Sbjct: 891 ADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKKKIADLGEAKHASVDFNLSVDWQNEN 950 Query: 894 IGIHLTGFADRIDLLKSGFVD 914 I L G+ D + S + Sbjct: 951 QKIRLFGYMDALFGDDSQVIH 971 >gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C] gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C] Length = 832 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 96/784 (12%), Positives = 204/784 (26%), Gaps = 61/784 (7%) Query: 46 SVTIYVPTKRAIQELRSEF----------------IEITGKKSTILPIIKSLGDVVEEKF 89 V T +A EL ++ + P I + F Sbjct: 72 QVLGLTFTNKAAGELAERVRKALAQAGVTDPDPSPADVEAGTAGGEPRIST-----YHAF 126 Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 LL + L + RLL A K+ YP S+P ++ + L Sbjct: 127 AGQLLKDHGLRIGLEPSARLLADATRFQ-LAAKVLREAPGPYPSLTKSVPDLVSDLLALD 185 Query: 150 KNLADIIDI------IETEEKKWEDLHALKNEKYG--MWWLLAADFLKIASKYWTERLVE 201 L++ + +TE L N+ + L + Sbjct: 186 GELSEHLVEPDALRAYDTELLGVLADTKLTNDDLRKVPEAVRGRLELLELVSRYRAAKRS 245 Query: 202 LNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + ++A R E L++ +++ + A L+S + G Sbjct: 246 RDLFDFGDQIALSARLATTRPEVGALLREEFRVVLLDEYQDTSVAQRLLLSGLFGGGTGH 305 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D W + + + + + L R RL ++ Sbjct: 306 AVTAVGDPCQAIYGWRGASVANLDDFPEHFPHPD----GSPATRLSLSENRRSGGRLLDL 361 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 +N + + + + L + AL+ E E + ++ Sbjct: 362 ANGLAAPLRAMHE-----------GVEALRPAPGAERDGLVRCALLNTHAEELEWLGDSV 410 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 A + A++ +++ L + +++ L + L S+ Sbjct: 411 AHLVRTGREPGDIAVLCRSAADFAQIQAVLVARDVPVEVVGLSGLLHLPEVADLVSVCEV 470 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + A+ L+ P + G + L + D D + Sbjct: 471 LQDPGANAALVRLLIGPRWRIGARDLALLGRLARQLVARPDAA----DGPDGRLAAALEG 526 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + L + + + + ++ Sbjct: 527 VDPAEVVSLADALETFLDGSAPGDLPFSAAARVRFAHLAQELRDLRRSLSDPLMDVLHRV 586 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 T +V L E + + A + Sbjct: 587 LATTGLDVELSASPHALAARRRETLSNFLDVAAGFAALDGEATLLAFLGFLRTAAQYEKG 646 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 +T+ +L +S+ L +D +++ L G +PK A + + L+ Sbjct: 647 LDHALPGGENTVKVLTAHKSKGLEWDVVVVPDLCAGSFPKEKAPEAWTAHPKVLPYALRG 706 Query: 677 AEKYIGQA-AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + A A + + T E + R L+L ++ +KR Sbjct: 707 DADTLPAAPAWTSAGLKSFKAALKTHKETEELRLGYVTFTRPRSLLLASGHWWGPTQKRR 766 Query: 736 QCYLDWTRKLDY------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + + + L + + P P A + L DP ++ RR Sbjct: 767 RGPSAFLQALYAHCEAGFGEIEAWAQEPAPDAENPALAADAAQDHSWPLPLDPASLALRR 826 Query: 790 ILKL 793 Sbjct: 827 EAAA 830 >gi|152974672|ref|YP_001374189.1| ATP-dependent nuclease subunit AddB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|251764583|sp|A7GM36|ADDB_BACCN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|152023424|gb|ABS21194.1| ATP-dependent nuclease subunit AddB [Bacillus cytotoxicus NVH 391-98] Length = 1170 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 74/240 (30%), Gaps = 34/240 (14%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 L S S ++ YA +A+ L L F D D G LFH + Sbjct: 782 AVSRILYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIF--KLDAPDIGELFHAALK 839 Query: 818 EL----------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKIS-- 864 ++ K ++ L+ + I +++ L + +I Sbjct: 840 KIADKLLREKRTWADLSIKECEHLSILVIEEIAPLLQRQILLSSNRHAYLKQKLQQIIFR 899 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKM----AIESIGIHLT--------GFADRIDLLKSGF 912 S + E S + + +P M ++ + L+ G DR+D + Sbjct: 900 TSLVLREHAKASGFVPVDLEVPFGMGGKDSLPPMEFTLSNGVKMEVVGRIDRVDKAEDES 959 Query: 913 ---VDITDYK-TGDNPKKETAQKLIDPQLSLEAAALKAGS---FSQIDCRKVANLFYIRL 965 + I DYK + + Q+ + + + Q + A + Y + Sbjct: 960 GTFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVISNAGTWMKQGEVASPAGVLYFHI 1019 >gi|229528682|ref|ZP_04418072.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae 12129(1)] gi|229332456|gb|EEN97942.1| exodeoxyribonuclease V gamma chain [Vibrio cholerae 12129(1)] Length = 1148 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 113/985 (11%), Positives = 245/985 (24%), Gaps = 133/985 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSLGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRAEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 L + +ADI D WE + W + Y Sbjct: 124 RFQLTEKIADIFDGYLVYRPDWILSWEAGKEVAEIADQHPWQPIL--WRELYAY--THKQ 179 Query: 201 ELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 + + A + I G + P + + H + ++ Sbjct: 180 GHSIYHRANLYQRFIEQLASGSFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVHLM 239 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ------------------------- 293 L H I + + Q Sbjct: 240 LTNPCQHYWGDIRDRKYLARVAAQKRKLLHINGEQVTIGSEVAPLKGDVENYLQESMHLS 299 Query: 294 -YSLAKLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMRNT 342 LL + D L +++ I L Sbjct: 300 HAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAK 359 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 P+I + + + E + L + + + ++ D N Sbjct: 360 FASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINA 419 Query: 399 ARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I IS + + LL + L++ P Sbjct: 420 YAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLETP 479 Query: 454 --LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLDRI 496 +A+F E+ + AK +E +R NS + + L+ + Sbjct: 480 AIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAM 539 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + ++ L + + L ++ T W Sbjct: 540 PAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNE 599 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + +L +L ++++ G + ++T + G Sbjct: 600 LLERC-----FSVDLQGELALKTIRDSLVNLKQQLVDAGYQQAISPAIIRQVLTNKLSGT 654 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P N F R +Q + ++ Sbjct: 655 RISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRS 713 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDF 727 + + + L + R +N + S + LL L G + Sbjct: 714 RREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEH 772 Query: 728 FDNLKKRGQCYLDWTRK-------------LDYTTKQPHYKRPK------------PFPP 762 ++ + T + + + R + + Sbjct: 773 LESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLL 832 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 + P E+++ P A + +R LK+ + + D G + + EL Sbjct: 833 EVSWPMELDLVELQRFWRLPVAYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRDEL 892 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ + + + P L + E+ + Sbjct: 893 VENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQ 952 Query: 880 KIFVNIPAKMAI----ESIGIHLTG 900 + + + + + L G Sbjct: 953 PLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] Length = 1147 Score = 104 bits (259), Expect = 9e-20, Method: Composition-based stats. Identities = 91/774 (11%), Positives = 190/774 (24%), Gaps = 60/774 (7%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L +A R + + A + ++I + Sbjct: 355 LALAVAQLRLRFADTGEVDFIEIAQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ T+ +G + D + + Q Sbjct: 415 QTQLDLLRTLTSGWQQGDGRSLFLVGDPMQSIYRFRKAEVGLFLEVADIGVGE--LQPDF 472 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L D + V+ + ++ R + + S + + E + Sbjct: 473 LNLTDNFRSQAGIVEWVNQSFAQLLPRRSDAAAGAISYSPSTAFHEALPEPAVRFHPAWS 532 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + A + A+ + + K A++ R+ + L + GI Sbjct: 533 REGAAPAEAQAEDIAVDLVRQALIDHKGAKHPVAVLVRARSHLGNLTRRLAQEGIRCRAV 592 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 +PL+ + L L+ A+ D +A ++++ P L Sbjct: 593 DLVPLALRPVVADLVQLVRALSHPGDRLAWLSVLRAPYCGLTLTSLQ------RLFGDDH 646 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL-LVDHILQCITPLV 535 L+ A + + + + A L + + + Sbjct: 647 ITPVPVLLERALRIAPQTAPAAAASAPQGSLFDAAPDTPETPAAQNVLGADEFERLRQVA 706 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 +K + G + + W + L L + ++L L ++ G Sbjct: 707 AILLDKRNAAGAMPFAAWVESLWRRL-----GGPALYAGLSVANDAESLFQLIERLAPHG 761 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + A I + E S + I+ +S+ L F+T+IL GL+ Sbjct: 762 AIDVAALDTGIARLFA-----APDAADEDSGAVEIMTMHKSKGLQFETVILYGLHRAPRG 816 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIG---QAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 F + + + R L Sbjct: 817 DQAPLVRFEQSGGRVLFGPVKPRAETEADPLSRYLGAREARRASYEIDRLLYVAATRARK 876 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS- 771 L + + L T + + Sbjct: 877 RLHLVGHVSVDEASGQVKTPSSASLLGRLWPCLAVPTPPSLDGETMAPQADGPEWQGEPL 936 Query: 772 ----------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR---TDRGTLFHNIITE 818 + + L+ P A R D H + GTL H + Sbjct: 937 RRVDRAGLAQLARMADLVVSPGFGAAARGAWGDGGEHPAWQLEAGYDAAIGTLSHAWLAR 996 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---- 874 + + + + + + + +P + + L E + Sbjct: 997 IGQDGVQAWSADALAQRLPAMRRQLTRAGIPASQADAASEAVLETLQATLADERGLWLLS 1056 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 QS + + I A + I + L+ + G I DYKTG E Sbjct: 1057 QSGARREWPLIDAAGKVSVIDLALS--------TEDG-WLIVDYKTGRPHPGEA 1101 >gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans] gi|133739286|emb|CAL62335.1| putative DNA helicase II [Herminiimonas arsenicoxydans] Length = 975 Score = 104 bits (259), Expect = 9e-20, Method: Composition-based stats. Identities = 121/1042 (11%), Positives = 266/1042 (25%), Gaps = 120/1042 (11%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 + P + P S ++ +V + P L + T +A +EL Sbjct: 25 LATDGPVLIIAGPGSGKTFTLVE-----RIVYLITNKGIAPESL---FVVTFTDKAAREL 76 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWR 120 + + +L ++ F + L + ++R L + Sbjct: 77 TTRISNRLAELGIQ----FNLNEMYLGTFHSICLRLLEDYREFTRLKRSFTLFDQFDQ-Q 131 Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIETEEKKWEDLHALKNEKYG 178 L IKD L I A++ L ++ + E L A + Sbjct: 132 YFLYQRIKDFRELPDAQLVIGDDQTGRWAQSENLLKWLNKVSEEALDAATLAAAPEPEIR 191 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIA 233 L + E L E N+ G Q ++ + +G +++ Sbjct: 192 A--------LATCFAKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAQLRGKLTHLMVD 243 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 + R++ +A V+ D + T ++ + Q Sbjct: 244 EYQDTNTIQERILLLLAGERCNLCVV--GDDDQGLYRFRGATIRNILEFPALFDDGQCKQ 301 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L G + + P + +P Sbjct: 302 VKLTVNYRSHPDIIRFYNEWMKEQVWDDGTRVFRFAKQIVP-------REDEFPDLPAAV 354 Query: 354 KCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSALITADRNLARRVKLE-LTRFG 410 + + + N E ++ L+ L + + + L + +N L G Sbjct: 355 RLAASDDKDDTTNWHAEVLAFLNGLKASGQLADWNQVAFLYRSVKNDKVVALARFLEAQG 414 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + ++ L I + P + E + Sbjct: 415 VPVFSPRSNMFFEREEIRLMIGAL-----------IFLFPQFPKVRAW-TEGVTLPIWDY 462 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + + + + K L+ K + + + Sbjct: 463 YDHQCFKPFIDELRKPENKPLLDWARPLAKRHAVLGQNTDYSFSGLFYQLLQFPLFSRFL 522 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 V + + S + L E K L LF++ Sbjct: 523 AEDAVQGVDKGRAARNLGTFSKLLTKFEYL---------HYVSVLNPEFLEKNLRDLFNQ 573 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + ++ I + + + L +S+ L F ++ G L Sbjct: 574 FMRF-------------LVDGGIGEYEDEAEYAPKGCVSFLTIHQSKGLEFPVVVCGSLE 620 Query: 651 EGVWPKNTAKNPFL---SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 + +A + L + + K + + ++L+ + + Sbjct: 621 AVPRKQYSALDVLLEDGGYLSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQG 680 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 S++ +RL W + + Sbjct: 681 RGRSPSKYFERLFYE---------------LPSW-----RDVELSALTFEAVKQINLKRE 720 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 +++ S I N + L+ I GTL H I ++ K + Sbjct: 721 YSFT-SHITVFENCAEQYRFFKELEFAPIRE-----SPMLFGTLVHQTIEDIHKTVLRGE 774 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 I+ + S + L + E+ + ++I Sbjct: 775 EGSISLDAIKGWFSANYAMLSKKERVYLAPSSQQAALLHVLRYYERENGNWDRIK-EAEV 833 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP---KKETAQKLIDPQLSLEAAAL 944 ++++ L G D I + V+I D+K+ P K + QL + A + Sbjct: 834 EISLIKDQYILKGSVDLI-RGEHDTVEIIDFKSEKKPDMEKDRDRLRQYQHQLEVYAHLV 892 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + + ++ L+Y T D D K++ +IV ++ Sbjct: 893 EERTGQKVSRLH---LYYTGEDGGNPYVSFTKD------DRAIGKTIARFDDIVARIERQ 943 Query: 1005 EQPFISHLR---LSEKSNIQSE 1023 + + LS + Sbjct: 944 DYQIAARPAKLCLSCDMRAYCD 965 >gi|291520410|emb|CBK75631.1| Exodeoxyribonuclease V, gamma subunit [Butyrivibrio fibrisolvens 16/4] Length = 646 Score = 104 bits (259), Expect = 9e-20, Method: Composition-based stats. Identities = 57/555 (10%), Positives = 159/555 (28%), Gaps = 44/555 (7%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEK-YGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 + +I + E L + N + A L + + + + + ++ Sbjct: 121 QIKSLISEMTQYNISPEKLTEMINSPTMSESFRRKASDLLVIYQAFLDFIEGKYVTTESI 180 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + + + + +++ G TG P +L+ + + V D P Sbjct: 181 L--STLNEMLDSSEIVSNSTVVLDGFTGFTPIQYQLVEHMLKICDEVAVTITADQDTP-- 236 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 S+ + ++ + + + + + + S + Sbjct: 237 ------LFEVKSEDEVFAMSSEFAMKMNRIAKKVGTEINEPLFISDEKGWLSENSAL--- 287 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKK 387 + + ++ + +++ + R+E +AI + + E + K Sbjct: 288 -------TFLERNIFRGEEVYQGENAADSISITGLRSPRDELKYVAITINKLVREGMHYK 340 Query: 388 KSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 A++ + R + + T + I I A + + + SL + + + Sbjct: 341 DIAVVAPNMESYRYLLPGIWTDYQIPYFIDAKTEILFHPMAEAIDSLFDIFDRDFRREDV 400 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 ++ L E +RG K + ++S ++ Sbjct: 401 FRFLRTGLTALTNDEIDYLENYILA--TGIRGKKKYFHPFAIRSNQFNKDEDLLK----- 453 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 E ++ + + I T + + L D + Sbjct: 454 ------VNEIRDKIIQPFIDFEKAIKNTDTVRNIATALYNFLLCFDVEGKINERGKQFSQ 507 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 D + + + + + + K++ K + E+ DI + ++ + Sbjct: 508 D-NNPVKAKEYSQIYPIIMDILDKMVSILDEEKVDLGEFHDIYEAGLSAASIGVIPPAND 566 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL------NLKTAEKY 680 ++ + +RL N L G ++ PK LS++ + L + + Sbjct: 567 SVILGDIERTRLSNIKVLFCLGASDDAIPKKVENGGILSQLEREQLLEQGFELAPSDRQK 626 Query: 681 IGQAAHDFEMANGTR 695 + + Sbjct: 627 SFRQRFYLYLMLTKP 641 >gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] Length = 1101 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 116/1102 (10%), Positives = 254/1102 (23%), Gaps = 152/1102 (13%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLL-LASVTIYVPTKRAI----Q 58 ++ V P A T+ + N V T++A + Sbjct: 27 EQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLGLTFTRKAAGQLLR 86 Query: 59 ELRSEFIEITGK------KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 +RS + G + P++ + F LL Y L P+ RLL Sbjct: 87 RVRSRLARLAGIGLGCGDPAACAPVVST-----YHAFAGSLLRDYGLLLPLEPDTRLLSE 141 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHAL 172 L + + + L + + S +W L + + +L L Sbjct: 142 TELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDTRALRDTHVELERL 199 Query: 173 KNEKYGMWWLL----------------AADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + + L ER+ + R Sbjct: 200 VHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQMASAAR 259 Query: 217 AEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGAIVLPGLDCHIPTA 269 A + +++ + A ++S++ +G + D Sbjct: 260 LAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGLALTAVGDPIQSIY 319 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED-------------------- 309 W + + +++ S + +LL + Sbjct: 320 GWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGISAEARRRSVAVRA 379 Query: 310 -------------VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L +V E + + + + ++ N Sbjct: 380 LRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPTAAVLVRRNADAAA 439 Query: 357 SDVALIEADNERE-----------EAISIAIALRMSLDENKKKSALITADRNLARRVKLE 405 L E E + LR+ D +A+ R + Sbjct: 440 IADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARD 499 Query: 406 LTR-FGINIDISAGIPLSTTLHSSILTS--------LLNAIFKLNDFMAI---------- 446 L + + +S P + + S + + L +AI Sbjct: 500 LAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGA 559 Query: 447 ----ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + ++ L R ++ S + L Sbjct: 560 LAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 S S + + + + + P + + ++ Sbjct: 620 ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEMAGGGGA 679 Query: 563 NVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TV 618 ++ + W + + L G+ + + + Sbjct: 680 HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---------FLSRVMQ 669 + +++ L + + +L + + P + R Sbjct: 740 RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGTD 726 + E++ A D + L + Sbjct: 800 AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 D D P P S S + +L+ DP Sbjct: 860 GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 R + +L P G FH + + + + ++ + + Sbjct: 920 QRLMCRLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPGAADREV------- 967 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID 906 P + + R ++ V +P +M I + G D + Sbjct: 968 GDPEELAALQRA-----------FTASSWAARTPAAVEVPFEMPIGDT--VVRGRIDAVF 1014 Query: 907 LLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLK 966 + G + D+KTG P A + QL++ A + V FY ++ Sbjct: 1015 VDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCPTSSVRTAFYY-VR 1071 Query: 967 QKFKIDCITNDKKKYSADELSE 988 + A L++ Sbjct: 1072 SGITVVPDELPAPGELAMLLTD 1093 >gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] Length = 1147 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 93/884 (10%), Positives = 207/884 (23%), Gaps = 98/884 (11%) Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 LA + + + L AL + + L A + + Sbjct: 323 DRLAAARERLRGARVAADTLDALTLAEAYLAAYRVEKQLAGALDFADLIEK-----TRAL 377 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-----------ANHPNGAIV 258 A + + G I++ + + P ++ + + Sbjct: 378 LASRPAAAWVLYKLDGGIDHILVDEAQDTAPDQWEIVRALTGEFFAGEALPRRGELDRTL 437 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---- 314 D + + + + + R + L Sbjct: 438 FVVGDEKQSIYSFQGADPERLILETRRYVAEIAAAGRNGASVPLHASFRSTEEVLAFVDA 497 Query: 315 ----NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 V + + ++ + + DV E+ +R Sbjct: 498 VFGAGVPPGVEPLEHIPMRAGERGCVDLWPLEREPKGEAREAWDAPLDVEGEESATKR-L 556 Query: 371 AISIAIALRMSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDIS 416 A +IA +R + L+ L + L GI + + Sbjct: 557 ARNIACEIRDLVRRGDAVADRDGRRPARYGDVLILVRKRGALFEEILRALKHAGIPVAGA 616 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 + LS + L +L D + +A L+K P + L Sbjct: 617 DRLALSEHIVFDDLMALARFALFPADDLTLAALLKSPFCDLDDAALFDLAHGREGSLWRT 676 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + + + + H P + + + Sbjct: 677 LLARAGERPDWAAAAGFLQAMREAAREHGPFGFYA-----------------RALGVRGS 719 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 + S ++ L V E R + +L + K G Sbjct: 720 DGRSMRSRLLRRLGAEAQDALDEFLAQVLAAEGRGVHDLETLAADFAGLDIIVKRELEGG 779 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + K ++ + + T + ++ +W Sbjct: 780 RDEVRVM------------TAHGAKGLEAPIVVLPETTSDQGARGSPMLETADGGFLWCA 827 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 + + S ++ K E+ + A LI + N W Sbjct: 828 SGKADCEASAAARALRQDKETEESLRLLYVALTRA--RERLILCGRIPSNRKEDGLKGWW 885 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 + + ++ C + + + A + + Sbjct: 886 AAIRAGFEHEAIAPHLRQAACGEVLATRYGPDPEPLGRRVAADAVAAAAPAWSAVSPPPE 945 Query: 777 QLIN--DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 P + ++ + R RG L H ++ L + L Sbjct: 946 AFARYASPSDLGEGTVVAAPSPLAAAQGLGRFRRGDLIHRLLQLLPDLAPPERAAGAAAL 1005 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 +++ D ++ + + F E + V I A Sbjct: 1006 LRRETD---LADDQRAEMAAAALSVLED--PRFAEV----FGPGSRAEVAIAGGAAALPP 1056 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQI 952 + ++G DR+ +L V + D+KT A Q++L +A L Sbjct: 1057 ALRISGRIDRLVILPD-RVLVADFKTNRPSPGRIEDADPAYLRQMALYSAVLAEV----F 1111 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 R++ K + L ++L L Sbjct: 1112 PGRRIEAALVWTDGPKLMPVP----------ENLMAQALAELRR 1145 >gi|308234384|ref|ZP_07665121.1| ATP-dependent nuclease subunit B [Atopobium vaginae DSM 15829] gi|328944200|ref|ZP_08241664.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829] gi|327491119|gb|EGF22894.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829] Length = 1080 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 67/420 (15%), Positives = 120/420 (28%), Gaps = 100/420 (23%) Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG-- 693 +FD ++L G + P A +P + + +++ + A HDF Sbjct: 569 WLPASFDAVVLSGQTSQMSPLPRALDPL--QQLLVAFDIEKPVTPLACARHDFRALLRLA 626 Query: 694 TRHLIYTRSLRENNIP-TIASRWLQRLLVLGG-------------------TDFFDNLKK 733 H++ RSL + + T S LL G ++ Sbjct: 627 QHHVVLERSLFDESSHKTYPSVMYTELLACYGLSSFEDDDVLAHFSHMSMSETGISHMIY 686 Query: 734 RGQCYLDWTR-------KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 G + + ++ P A S S+I+ + PY + Sbjct: 687 SGARPQVFAQDNPLCAGQVSKDYIPLVCVSPMGRKAEIADKPLLSASQIEAYLRCPYLWF 746 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----------------KNTP 829 R L L + GT H ++ + K ++ + Sbjct: 747 NERRLGLTTPD---AGFSPMEAGTFVHRVLELVHTKLLDVAQSKSMHSDALYTIGARANA 803 Query: 830 EINHL------------MKQIIDSHFEKENLPPHIDII---------------WRHLFHK 862 + + Q D H + L + K Sbjct: 804 QAPARVSKTADEHTHMLLDQFFDEHLHHQYLKQSQKRYKQLQIFVPHCLEDEGLLNQIRK 863 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPA---KMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 HSFL++E + E F + + A+E G+++ G DR+D+ G I DYK Sbjct: 864 DLHSFLDYESGLFEGFEPRFFELGFGKGEAAVEYAGVYVNGSIDRVDVDAHGNALIIDYK 923 Query: 920 --------------TGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 T +P T + Q + A+ L+ V Y+ Sbjct: 924 HKSTYKFLPSYALFTSAHPYTDGTYELAEHIQTLIYASVLQKL----YPNLHVVGALYVS 979 >gi|262166385|ref|ZP_06034122.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus VM223] gi|262026101|gb|EEY44769.1| exodeoxyribonuclease V gamma chain [Vibrio mimicus VM223] Length = 1148 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 116/987 (11%), Positives = 250/987 (25%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + ++ Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348 LL + D L +++ + S L +D+ + ++ Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFAISSHKPSIVAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 IPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729 ++ + + + L + R +N + S + LL + D Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 730 NLKKRGQCYLDWTRKLDY-----------------TTKQPHYKRPK------------PF 760 + L + R + + Sbjct: 771 ENLESDDSGRRLVEHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPIELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACCDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 774 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 82/723 (11%), Positives = 194/723 (26%), Gaps = 81/723 (11%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E+R +++ G ++ L ++ + + Sbjct: 58 RILAVTFTNKAAREMRERLVQLLGAQAHEL-VVSTFHSSAAMILRREAEAV--------G 108 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + R + + + P P + I KN A + D ++ Sbjct: 109 LTRSFVIYDDGDQLNIVKRAMRE--ARVEPSMQPREILHRIDQEKNAARLPDAMQ---VD 163 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 +DL + K + + L NA + L+ +H Sbjct: 164 ADDLRGMVV--------------KRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPEVL 209 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + P L+ +A P GA ++ D W + + Sbjct: 210 EKYRRRFSHVLVDEFQDTNPVQYELLRLLA-PPPGANLVVVGDDDQSIYRWRGASVDNIL 268 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + T+P + KL + ++ V ++ R Sbjct: 269 GFPN-----TYPGAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAK-------------- 309 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 K+ + ++ + L+ +ER EA +A + E A+ Sbjct: 310 -------KLWSERQRGEHLQLLILRDERAEAQEVARQIHALQREGFIKYSGMAVFYRVNA 362 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + +G + L + + ++ P Sbjct: 363 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDAAAYLRLMVNPRSDADLLRIINTPARGI 422 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + ++L + + + R + +D Sbjct: 423 GDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRLAGVHTLLASLNSFAQGAKDA 482 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 AV + + + L +++ +L+ ++ + + Q L+ Sbjct: 483 ASAVDEMLRETRLVESLTAEGSDE-----SLTRAENLREFLGAAQEFDLNRAAASVAAAA 537 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + L + + + I + ++ ++ Sbjct: 538 AVPAEPEEPLPADLDAAPLSADVPP---LQSFLEQISLVGDADAEVGEGKVALMTLHAAK 594 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FD + L G+ + V+P + A + + F A + Sbjct: 595 GLEFDAVFLTGMEDNVFPHSRALVGEDPDEGEEMA------EERRLCYVGFTRARRRLFV 648 Query: 698 IY--TRSLRENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 RSL SR+L+ + G + + R+ P Sbjct: 649 SLAQCRSLFGELRYNPPSRFLRDVPPTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 708 Query: 754 YKR 756 R Sbjct: 709 IDR 711 >gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] Length = 1149 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 94/862 (10%), Positives = 218/862 (25%), Gaps = 117/862 (13%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM----------KGTKGPIIIAGS 235 L + + Y+ + L L + L++ E L + I++ Sbjct: 327 RDLALVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQDIVARHIRPRYQYILVDEF 386 Query: 236 TGSIPATARLMSTVAN--HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 + PA +++ + P + D ++ + T Sbjct: 387 QDTDPAQFEIITAIIGELQPGTRSLFIVGDPKQSIYLFRNAD------VTRFKEAQTRIL 440 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 L LD + + N ++ R ++ ++ D + +I Sbjct: 441 SDCKGNLINLDTSFRSCREVIGCVNYLFSRIFASTEKPWEFGYEPIQVCDDRKASPGSIT 500 Query: 354 KCFSDVAL---IEADNEREEAISIAIALRM---------------SLDENKKKSALITAD 395 A ++ + EA +A + A++ Sbjct: 501 VLLPGKAPKGSERSETKEIEAGMVADLVHQIVSCGSFQITDRDGVMRPAGYGDIAILIER 560 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 R R L+R + GI + + ++L+ + + D A+ +++ P Sbjct: 561 RTHLTRYTTALSRKETPFYVHGGIGFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYF 620 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 F P Y G K + + + +R T+ + S Sbjct: 621 SFSDPLIYHILNV--------PGAKRRWSLYEKLRACAERFCTRPSEIEPSAEILSCSPA 672 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 D+EL + L+ N + + + L E + Sbjct: 673 DQELILRAAR--------LLESWRNLAGREPVVPLVNRIIRESGILTIYGALEQGEQQA- 723 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTL 634 L + E G + ++ + I I +++ I+ Sbjct: 724 ---ANLTKLLGIIRGRTEGGYYSLFDLVQDMMISIADEEREGEAALDTLSKTSVNIMTVH 780 Query: 635 ESRLLNFDTLILGGL---NEGVWPKNTAKNPFLSRVMQSDLNLKTAE------------- 678 ++ L F +IL + EG + + ++ + + Sbjct: 781 AAKGLEFPVVILPDMGSSREGKLGPILSGDHPHLYGVRIPDPDQDFDIKETPVYTALSLI 840 Query: 679 ----KYIGQAAHDFEMANGTRHLIYTR----------SLRENNIPTIASRWLQRLLVLGG 724 + + + A R + + NN + Sbjct: 841 QKEKESAERKRLFYVGATRARDHLVLCGKQPDKFYESVDKSNNRIDWVCTLFGITKDIAE 900 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 ++ L + + PPL S ++ Y+ Sbjct: 901 EGGVISIDPEDGGKPIDITILTDPDQLTRMWAQEALPPLTLPDEYAKLSGTRK--RGLYS 958 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF- 843 + +P G H + + I + + + ++ F Sbjct: 959 DMPDEKATIRPVPVTDIGLLGKATG---HE--ETIHQVTIPGGSHLLPDEIGTLLHHIFS 1013 Query: 844 ----EKENLPPHIDIIWRHLFHKIS-HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + + I F F + F + + + Sbjct: 1014 GKDTKSVLVSYGITSPEAESFCNTLYQRFCSTPLIR--DAVRSFQEVSF-ITYSG-NFPV 1069 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 TG DR+ + DYK+G + + QL++ A + + + Sbjct: 1070 TGRIDRLIQDSRNEWAVIDYKSG-------DKTGAELQLNVYRIAAE------VLTGQPV 1116 Query: 959 NLFYIRLKQKFKIDCITNDKKK 980 +F +K + ++ Sbjct: 1117 RMFLYSMKTGEFTEPRFLSDEE 1138 >gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW] gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW] Length = 1171 Score = 104 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 88/858 (10%), Positives = 200/858 (23%), Gaps = 74/858 (8%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE--KKWEDLHALK 173 + + + I+ + + + A + LA+ + + ++ ++DL Sbjct: 328 LEALQREAQRILDVTAEMKCVGVAQATAALLTLAEAMLETYARLKRARALLDFDDLILTA 387 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 + A L LV+ E Sbjct: 388 SRLLAGEGRACAWVLYKLDGGLDHILVD-----------EAQDTNPEQWDVVKAIAEEFF 436 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 G+ R + V + D + ++ + + Sbjct: 437 AGQGAADDRRRTLFVVGDDKQSIFSFQRADPAEFARMRRHFADRVAAAQARWEPVNLQTS 496 Query: 294 YS-LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + + +L +D + V+ + + + E P Sbjct: 497 FRSVGAVLRCVDAVFRLPQARDGVAEDGTEVCHRPFRRGMAGRVELWPVLAPEEAGDPAP 556 Query: 353 QKCFSDVALIEADNEREE---AISIAIALRMSLD--------ENKKKSALITADRNLARR 401 +++ +EA R A IA LR L+ + Sbjct: 557 WTPPTEMERVEAPLARLATLVADQIAHWLRSGERLEARDRPVRPGDIMVLVRRRNRFVQH 616 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + L + + + L+ L L +L + D + +A ++K PL Sbjct: 617 LVRALKDRDVPVAGVDRMVLTEQLAVQDLMALGRFLLLPEDDLTLACVLKGPLIGLTEEA 676 Query: 462 KYLSRAKN--ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + L R + D V ++ + Sbjct: 677 LFDLAWDRPGHLWPALARAAEADPDGGPFLRAVGWLRGLLAETDFRAPFELFAGVLSRPC 736 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 V + L + ++S + + + E + + Sbjct: 737 PADPVSGRRALLARLGAEAVDPVDEFVAAALSFEREHVPSLETFLHWLEAGRAEIKRELD 796 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 G + +I+ K ++ + + T+ Sbjct: 797 AGGGPAGGRVRIM-----------------------TVHGSKGLQAPVVILPDTMSVPEQ 833 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 + L G + P + QS + + + Sbjct: 834 SPRILWPDGTDGREVPLFAPRRALEDPACQSARRAADHRRDQEYRRLLYVALTRAEDRLI 893 Query: 700 TR---SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 + R R +++ L + + L + K Sbjct: 894 VCGWEAGRRTGGDGCWYRLVEQALKAVAEEQDYDFTVVSPAGWQGPGLLLREAQSAPPKP 953 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD------RGT 810 E T +P + + + + P + RG+ Sbjct: 954 DSLEAGEEPAGVTLPEWARAGAPAEPAPSRPLTPSRPEGVEPPVRSPLGAEDGLRFKRGS 1013 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 L H ++ L P + + + ++ + + LE Sbjct: 1014 LVHTLLQVLPDLPAETRGPAAAAWLARPLHGLTPEQQAEIAAETL----------RVLED 1063 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 + +P + L+G DR+ + V I D+KT P A Sbjct: 1064 PDFAPLFGPGSRAEVPIVGLVGGR--ALSGQIDRLLVT-DTAVWIVDFKTNRPPPTVEAD 1120 Query: 931 KL--IDPQLSLEAAALKA 946 Q++ AL+ Sbjct: 1121 VPPVYLAQMAAYREALRR 1138 >gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] Length = 1164 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 81/860 (9%), Positives = 208/860 (24%), Gaps = 110/860 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI---ASKYWTERLVELN 203 LA+ D+ D++ E+ + + L +K L + + + Sbjct: 315 KLAEQRPDLDDLLYAEQDRLDRLA--DKQKAAAILARTLALLSLTEAIFERYEASKAHQG 372 Query: 204 ASSP----VGYQIALMRAEAEHLM---KGTKGPIIIAGSTGSIPATARLMST-------- 248 + L R++A ++ I++ + + A +++ Sbjct: 373 FLDFNDLIERTKALLFRSDARWVLYKLDAGIDHILVDEAQDTSEAQWKILEEMTGDFASG 432 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDI 305 +++ + D + + ++ +L D Sbjct: 433 LSSRVDTRTFFAVGDEKQSIFSFQGAAPHMFDQMRRRFNARFDAGEKAFNHVRLTDSFRS 492 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI--- 362 ++ + + + +++ + + ++ ++ + + Sbjct: 493 VPGILETVDQIFDHAGHYQGLVAANDPWMPHTALKAQLPGLVELWPLVGPSETEDIRDWT 552 Query: 363 -------EADNEREEAISIAIALRMSLDEN-----------------KKKSALITADRNL 398 E D A +A + L + L+ + Sbjct: 553 LPLDFPDEHDPPNIVAWRVAQKIAHLLTDRAHEHVYDEKQGLRPIRAGDILILVRSRGPF 612 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + L + I + + + + + L + A D + +A ++K PL Sbjct: 613 FAAIIRALKQLQIPVAGADRLAILQHIAVMDLIAAGRAALLPQDDLTLACVLKSPLIGLT 672 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + L + + + Q ++ + Sbjct: 673 DEDLIALAPGRPASLFDALRQSEDPRHAAAAARLDLWHQRIGLPPFTFYAQLLGTDGGRR 732 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + P ++ D T V L + + ++ Sbjct: 733 DLEA-------RLGPEAADAIDEFLNLTLQHERDSTPSLVAFLAELDNRDPSVRRDMETG 785 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + +A + ++ + K +F LGT Sbjct: 786 -------------ADLVRVMTVHAAKGLEAKIVFLPDTCAKASGSHDPLVFSLGTDAH-- 830 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 W K+ + +++ + + Sbjct: 831 ---------DAQILAWSSGKTKDCAALAKAREISRQGEEDEHR---RLLYVALTRAEERL 878 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 Y P S W + + + + + R+L + P + Sbjct: 879 YITGFHGKKGPGNGS-WHEMIDAALLGSAMEEIPAFWDPAENVRRRLSPGSLSPDDTHSR 937 Query: 759 PFPPLEAQPRTYSFSEIKQL---------INDPYAVYARRILKLD--FIPHFKKDPDRTD 807 ++ + A+ A L D + Sbjct: 938 EEEAKTDNKHLLPSWLVEAPPPEAEARPPLRPSSALAAADGLDEDFMPTAATPANLAALQ 997 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 RG L H ++ L + + ++D L + + Sbjct: 998 RGRLIHLLLQYLPSITPSHRQQAAMGFLGIKAR----------YLDGKTHALLTAEALTI 1047 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 +E + + + + I + + G DRI V + DYKTG P Sbjct: 1048 IEDPKLRGLYLPRSLAEVAVAGTISLGAGRTLSVNGRIDRIGET-DEAVLLADYKTGAMP 1106 Query: 925 KKETAQKLIDPQLSLEAAAL 944 + + Q++L A L Sbjct: 1107 RNGRTPETYLTQMALYRAVL 1126 >gi|213691704|ref|YP_002322290.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523165|gb|ACJ51912.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1101 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 106/856 (12%), Positives = 228/856 (26%), Gaps = 162/856 (18%) Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 I+ + A L VL L + + T + Sbjct: 140 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 199 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 H L F + +++ + ++ ++ MV + S + R D N + Sbjct: 200 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 259 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405 +I + ++ + E A +++ + + + ++ E Sbjct: 260 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 319 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 T GI I+I+A + + + LL++ +I +++ + Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 374 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L I +N + + + + D A L Sbjct: 375 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 408 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 I I + S ++ Q + + + Sbjct: 409 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 467 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 E + + + +++ + +S + +L L + +I Sbjct: 468 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 519 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688 + G +E P + L + DL+ T E+ GQ F Sbjct: 520 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 579 Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +A+ T+ L T N S ++ + GT + + + Sbjct: 580 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 637 Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793 + R P + S S I+ +PY + + LK+ Sbjct: 638 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 697 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKR--------------INKNTPEINHLMKQ-- 837 + F D GT +H ++ + P++ L+ Sbjct: 698 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTAPDMQELIADYS 755 Query: 838 ----------IIDSHFEKENLPPH--IDIIWRHLFHKISHSFLEHEEKIQSS------IE 879 +++ E L + +I R L + ++ + ++ + Sbjct: 756 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 815 Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908 V + G + + G DRID Sbjct: 816 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 875 Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 +S + + DYK+ P + + QL A+A + S V Sbjct: 876 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 930 Query: 958 ANLFYIRLKQKFKIDC 973 A +F++ +K I Sbjct: 931 AGMFFLPIKPSATIRE 946 >gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] Length = 1135 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 93/772 (12%), Positives = 195/772 (25%), Gaps = 104/772 (13%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK--------GPIIIAG 234 L +A + E +A A E +++ Sbjct: 379 ALFRVLPLAVGHLRTVFAERGEVDFSEIALAAKAALGEEGHPTDLALHLGYKIQHLLVDE 438 Query: 235 STGSIPATARLMSTVANH---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + + A L+ + GA + D + + + + Sbjct: 439 FQDTSLSQAVLLERLIQAWSPEMGATMFVVGDPMQSIYGFRQAEVTLFTRSWN--SGFAQ 496 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 A+L + E V + + E Sbjct: 497 MPLEQARLTANFRSRPELVTWFNQT---------FEHVLVADNEVTGAVKYAPSEAAREP 547 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 Q + + EEA + L+ L + K AL+ R+ + L GI Sbjct: 548 SQNAGPGFHSVASKAFEEEAARVIEVLQQELKGDAKSIALLVRSRSHMAHIAPALREAGI 607 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 L L ++ A+ L D A T+++ P + + + Sbjct: 608 AFRSKEIDVLGERQTVRDLHAMTKALVNLADRTAWLTVLRGPWSGLQLEDLWTL------ 661 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + + E +E +L D + + Sbjct: 662 --------------------------------CKDGERKTVWELLRERRGMLSDRAQKVL 689 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + + G S+ + L + + + + + + Sbjct: 690 ARTMPALDAAVTQRGRTSLRALVESLWVSLGGPAALGRT-----ERKAKLRDVEAYLDLL 744 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 SC + + + + I +P + ++ ++ L FD +IL GLN Sbjct: 745 QRVESCGEVDEKR----LEQEISRLYTRPDASSEIRVEVMTIHGAKGLEFDVVILPGLNR 800 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLK--------TAEKYIGQAAHDFEMANG------TRHL 697 + + + R++ + +L T K G A+ M G T+ L Sbjct: 801 WIRSEGGQLLNWRERIIGEERDLLLAPMDAVGTDRKKEGSIANYLAMLGGECSAEETKRL 860 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--DYTTKQPHYK 755 +Y + R RL ++ + +RG ++ + Sbjct: 861 LYVAATRAKE----------RLHLVTTMPAENKEPERGSLLSLLPAEVFGRFLKVPTPEA 910 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK----DPDRTDRGTL 811 + +P R + D D GT+ Sbjct: 911 EDEEEQRTPNLSHRLVPDWQLPAAPEPLKFETRYPVAADVREREHTFERVQFDLPRIGTV 970 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H + ++ + T E I + ++ + W + + L H+ Sbjct: 971 THRFLQQIGDEGPGGWTEERIAKTAPRIRALLLQQGIRSSELAKWEETVTRALRNTLAHD 1030 Query: 872 EKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 + E A++ + DR + + DYKT Sbjct: 1031 KGQWILKQRESASNEYGLTSALDGPRRSI--KVDRTFVEGE-VRWLIDYKTS 1079 >gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I] gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I] gi|332382057|gb|AEE66904.1| putative nuclease/helicase [Bordetella pertussis CS] Length = 1134 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 85/712 (11%), Positives = 178/712 (25%), Gaps = 48/712 (6%) Query: 228 GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 ++I + L++T+ +G + D + + Sbjct: 404 RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 P +L D + V + V ++ R+ + S + Sbjct: 464 RGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 + A + A+ + A + ++ A++ R+ + Sbjct: 522 PGEAVLFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L + GI +PL + L L A+ D +A ++++ P Sbjct: 582 RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLTLTSLQR 641 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + L V L+ + + L Sbjct: 642 LFGADQLTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + ++ + G L ++ W + L + ++L Sbjct: 688 PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYAGSSAASDAESL 742 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L ++ G + + + T+ I+ +S+ L FDT+ Sbjct: 743 FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696 IL GL+ F + L A A T Sbjct: 797 ILYGLHRAPRGDQAPLVRFEQSRGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856 Query: 697 LIYTRSLRENNI-PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 L Y + R +A + T +L R +L + D Q Sbjct: 857 LFYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWPHLSVPQPPDVAQDQAAAT 916 Query: 756 RPKPF----PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 +P P + + L + A + + GTL Sbjct: 917 GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGVYGGGQGAEHPSWQLEAGYDAAVGTL 976 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H + + + + + + + +P S L+ E Sbjct: 977 AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 + + + ++ D + G I DYKTG Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083 >gi|117620163|ref|YP_858410.1| exodeoxyribonuclease V, gamma subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561570|gb|ABK38518.1| exodeoxyribonuclease V, gamma subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1116 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 104/946 (10%), Positives = 245/946 (25%), Gaps = 97/946 (10%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL LV R PL+ I V + Q L+ E + G + I Sbjct: 11 DLLKELLVSRIRQAPLS-HPFDREQILVQSPGMAQWLKLELAKAFGIAANI--DFPLPAS 67 Query: 84 VVEEKFTADLLLSYNLNPPVSNI--QRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 + E FT L +P +L+ + +L P ++ + Sbjct: 68 FIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGDDADPAKDPE 127 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 L + +AD+ D W ++ + + W E + Sbjct: 128 QVRLWQLCQKVADLFDQYLVYRPDWIARWEQGEGLSQELAGVSGQDWQP--ELWRELVAR 185 Query: 202 LNASSP-VGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVANHP- 253 A SP ++ L L + + + G + P + + + P Sbjct: 186 TLALSPSGYHRANLYEEFIHELQRTATLPGKLPQRVFVFGISALPPRYVEALLALGSRPE 245 Query: 254 -NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD-IKREDVK 311 + + + + + T T Q LL + + R+ + Sbjct: 246 VEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGTDIETLQGPANPLLASMGKLGRDYLH 305 Query: 312 RLGNVSNEMYG----------------RSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 +L + + + + + + Sbjct: 306 QLMELEVPQIEAFVDIEEMDGKGNIKLLHAIQKDVLELAERGAGQFDLDASHHKSPLDPA 365 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL--TRF 409 + + E + L +++ K ++ D N + R Sbjct: 366 DGSLQIHACHGPMRELEVLHDRLLALFEQDTSLTPKDVVVMMPDVNSYGPYIQAVFGARG 425 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRA 467 I +S + +LL + +++ P L +F ++ ++ Sbjct: 426 QIPFAVSDRAASQESPLLQSFLALLRLPNARFGAGELLAILEVPAVLRRFELDDEEFNQL 485 Query: 468 KNALELVALRGNKNS--------YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + ++ +R + + L R + + Sbjct: 486 RVWVQETGIRWGLDDGYPERFDLPPLSGNSWLFGLRRMLLGFAMGDGEPVAGILPYADIE 545 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 + + + + +W L+ L + + L + Sbjct: 546 GQQGLALGKLAW-FVDSLAEFLPRLQQAQPLGEWVACLNALLERFYLADEDEERQL--QL 602 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 L+ +++ E +A D + ++ GE+ + + + + R + Sbjct: 603 IRSQLADWLAQLGEARFEQPISADLLQDYLGSVL-GESRSSQRFLAGQVNFCTLMPMRSI 661 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LI 698 F + L G+N+GV+P+ F +M + E + L Sbjct: 662 PFKQVCLLGMNDGVYPRTLPPMGF--DLMAVAGRRGDRSRRDDDRYLFLEALLSAQQGLY 719 Query: 699 YTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY--------- 747 + ++N + S L L+ F ++ R L + Sbjct: 720 ISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLAGDEQLDDESSGKRLLAHLITQHPLTP 779 Query: 748 -----------------TTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLI 779 P+ P PP + + +E+ + Sbjct: 780 YSHAYFYPAAGSGLFTYAADWLPALHPQRGAANFQSGELPLPPEWGKEQGLELAELLRFY 839 Query: 780 NDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 P + R LK+ F ++ + + L H + +L+ + + Sbjct: 840 RQPARYFLNRRLKVWFELNEANIEESEPFELDGLQHYQLKDLLLDAHLAQGDSVVRRERL 899 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + + + K++ ++ + + V Sbjct: 900 QLTGLLPQGWFGSLLLEDLDEQMGKLADRLRPWVAANEADKQAVEV 945 >gi|108806487|ref|YP_650403.1| exonuclease V subunit gamma [Yersinia pestis Antiqua] gi|167399863|ref|ZP_02305381.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|108778400|gb|ABG12458.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis Antiqua] gi|167050571|gb|EDR61979.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 1123 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 87/803 (10%), Positives = 195/803 (24%), Gaps = 87/803 (10%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + L +L S +L L+ L + + Sbjct: 61 --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE ++ W L + Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + + + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295 H + ++ + I + + HPQ + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290 Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 LL D L + +E+ + + LE+ Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++ + + E + L L + + + Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + D + + + IS +LL+ + Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + +S+W + Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + I D + +D E Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + E + L + R + R+L L+ + G Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSK--RYLSVLVSELIEYVAQSYHLPG 763 Query: 736 QCYLDWTRKLDYTTKQPHYKRPK 758 L T+ + Sbjct: 764 DEKLSADDSAQRVTQHLLCWHAR 786 >gi|212711216|ref|ZP_03319344.1| hypothetical protein PROVALCAL_02288 [Providencia alcalifaciens DSM 30120] gi|212686384|gb|EEB45912.1| hypothetical protein PROVALCAL_02288 [Providencia alcalifaciens DSM 30120] Length = 1124 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 88/770 (11%), Positives = 191/770 (24%), Gaps = 99/770 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LP 76 +++ L+ + + P + V + Q L+ E + G + I LP Sbjct: 11 DLLKELIAHLMENDPLTHPFEQE-----IVLVQSPGMSQWLQIELAKRFGIAANINYPLP 65 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + + F L P S + +L+ I + + + L Sbjct: 66 AT-----FIWDMFRRVLPDI----PKESAYTKQAMTWKLMTILPTVINEAEFEPL-RHYL 115 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADF-L 188 + L+ +AD+ D +W E + L + + W L Sbjct: 116 NDDSDKRKLHQLSGRIADLFDQYLVYRPEWISHWQRNELIEGLSSNQL---WQKRLWLCL 172 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 + + E+ L K + I G + P + ++ Sbjct: 173 VEYTAQLGQSPWHRANLYQSFIDKL---RESPELAKNLPARLFICGISSLPPVYLQALNA 229 Query: 249 VANHPNGAIVLPGLDCHIPTAI----------WNTITEKSTNITSSNTTYSTHPQYSLAK 298 +A H + ++ + I + S H Sbjct: 230 IAEHTDIHLMFTNPCRYYWGDIQSSAFLARLQQRKLRHYLDKYEISRFKIEEHAANLFNA 289 Query: 299 ---------LLDFLDIKREDVKRLGNVSNE---------------MYGRSMVISKSFLPP 334 LL D + + + I Sbjct: 290 DGEQNIANPLLASWGKLGRDNLYFISQIDATNEVSAFVENGRNNLLENLQQDILDLENHA 349 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSA 390 + + V + + E + L +E+ + Sbjct: 350 QLGATLEEYESSQHKRPLNQLDQSVTFHSCHSAQREVEVLQDRLLALFEEDATLTPRDVI 409 Query: 391 LITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 ++ AD + + + I IS L LL+ Sbjct: 410 VMVADIDSYAPYIQAVFGNTNSSHYIPFSISDRKALQAHPILQAFIMLLDLPQSRFSTEQ 469 Query: 446 IATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRI 496 + TL++ +F E LS + + +R + ++ L + Sbjct: 470 VLTLLEVSAFSARFNIDESELSLLRRWVNESGIRWGLDDDNVRSLSLPVIGQNTWQFGLS 529 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTK 555 + L + + L T + + ++ +W Sbjct: 530 RMLLGYAMDSRNGPWNGVLPYDECSGLAAQLAGKLALLVDTLREWRTLLEQERTLEEWKT 589 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG----SCIKANAIEWIDIITR 611 + + + E L+ + KIIE D ++ Sbjct: 590 VCQQLIDTC------FKVDSETEVVLALLTEQWHKIIENALTSNYQETIPLRLIRDELSV 643 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 D E + + + + + R + F + L G+N+G +P+N F + Sbjct: 644 CFDDEKISQRFLAGA-INFCTLMPMRSVPFKVVCLLGMNDGAYPRNVPPLGFDLMAEKIQ 702 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719 + + + + L + R +N S + L Sbjct: 703 RGDRKRRDDDRYL-FLEALNSAAKQLYISYIGRSIRDNQECNPSVLVTEL 751 >gi|253698975|ref|YP_003020164.1| exodeoxyribonuclease V subunit gamma [Geobacter sp. M21] gi|251773825|gb|ACT16406.1| exodeoxyribonuclease V, gamma subunit [Geobacter sp. M21] Length = 1071 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 97/948 (10%), Positives = 220/948 (23%), Gaps = 106/948 (11%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS---TILPIIKSL 81 L++ P I V K + L E G + + P K + Sbjct: 14 LVDELERVVRAPRPAPCTPFDKELIVVQNKGMQRWLSMELAARIGVWANGEFLFPN-KFV 72 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +V + P V + IL L+ Sbjct: 73 QEVFAHVLPESPADAPLFAPEV--------MTWRILGLLRHSAGRAGFEEVAGYLADDGD 124 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + LA+ ++D D ++L + + W + W Sbjct: 125 GLKRMQLARRISDTFDRYTIYR--PKELLRWEQGEE-EHWQA---------QLWRALHEG 172 Query: 202 LNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 ++ L+ + I + G P +++ VA H + L Sbjct: 173 TGQ----KHRARLLHDFLASRKNDRSWRRRISVIGIPSLPPFHLDVLAKVAEHAEVNLFL 228 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 I + + + + L + + R+ K + + + Sbjct: 229 LNPCRQYWGEIVS--ERELARLEKHGQGEEQWYETGNPLLASWGKLGRDFFKAIIDDCGD 286 Query: 320 MYGRSMVISKSF---LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 L +D+ E +Q + + + E + Sbjct: 287 HEREDSFYELPQGILLHEVQADIVELRGAEAGPRQVQAGDLSLKVHSCHSPMREVEVLYD 346 Query: 377 ALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLSTTLH 426 L D + + ++T D + R I I+ + Sbjct: 347 TLLSLFDADPLLSPRDVLVMTPDIEAYAPYISAVFDNPEEDRKRIPYSIADRSLKNEGEA 406 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF----PEKYLSRAKNALELVALRGNKNS 482 + L ++L + +++ P F + R + + Sbjct: 407 ARALVAILGLCGGRYGVATVLDILESPPVARRFGLCGDDLENVRDWLRGANIRWGIDAAQ 466 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-------ILQCITPLV 535 + + + + + + + + + D + + Sbjct: 467 RAEHGVPPFSENSWSAGLDRLLLGYAMNGDGRSFYDGILPYDDMEGGVALSFGRFLAFCE 526 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + S+W L + L + ++ + Sbjct: 527 KLFAQTGALSRPRVPSEWVPALRRILDDFILPDQEGEREFL---LLIEMAKKLGESPAVA 583 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + IE + G + + + + L R + F + L G+NEG +P Sbjct: 584 GFEEEIGIEVVRYWVEQQLGASKRDLGFLTGNVTFCAMLPMRSIPFPVVALLGMNEGEFP 643 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIAS 713 + F + + + + + L + + +N S Sbjct: 644 RRNPPQGFDLMTREPRSGDSSPRDEDRYL-FLEALLSARKRLHISYVGQSIKDNAELPPS 702 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDW--------------------------TRKLDY 747 + LL F K R Sbjct: 703 VLVSELLDYLERSFVAPQGKPAAEVAHHPLQPFSPKYFYRDCALFSYSRQNCEGARAKLS 762 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPD 804 P PP E T + + + +P RR L + + ++ Sbjct: 763 PPSPREPFLDAPLPPWEEAG-TVTLKALIDFLCNPAKELLRRRLGIRIEQGVEPLEESEP 821 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS 864 + + E++ + +I + + + Sbjct: 822 FALDSLAKYQLEQEMVTALLRGEELDIP-YAVACARGDLPPGVCGSALFRKLGEPAQEFA 880 Query: 865 HSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA-----DRIDL 907 +E S E + P + + G + G DR+ Sbjct: 881 AKVVE-----VSDGEPLP---PLDIDLVLPGGRIVGRIENLRCDRMVR 920 >gi|259507243|ref|ZP_05750143.1| RecB family exonuclease [Corynebacterium efficiens YS-314] gi|259165186|gb|EEW49740.1| RecB family exonuclease [Corynebacterium efficiens YS-314] Length = 287 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 83/242 (34%), Gaps = 20/242 (8%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P P + +P S S P R I +L +GTL H ++ Sbjct: 12 APAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTV-----AQVKGTLVHAVLE 66 Query: 818 ELIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHE 871 E+ + ++ P + +K + E +P + + + E Sbjct: 67 EMHRLPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGY--FE 124 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + V + + G+ + GF DR+D +G + + DYKTG PK + +Q+ Sbjct: 125 MENPQGFDASDVEMYVDTVLP-NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQ 183 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK--KYSADELSEK 989 Q+ A F QI + L Y+++ + + + +L + Sbjct: 184 A-QFQMLFYALVYWR-LFDQIPAQ--LRLMYLKVNDSMFLTPSREQLEYFERDLGDLWAR 239 Query: 990 SL 991 Sbjct: 240 IE 241 >gi|218513540|ref|ZP_03510380.1| hypothetical protein Retl8_07371 [Rhizobium etli 8C-3] Length = 136 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 81/136 (59%) Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI 894 M+ I+ F+ E LPPHID +WR F +++ +FLE E + +I + + + +E+I Sbjct: 1 MELILTELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVRGGVELETI 60 Query: 895 GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDC 954 I L G ADRID+ DI DYKTG NP A+ L+DPQL+LEAAAL+AG+F Sbjct: 61 NIRLNGVADRIDITGPNAADIIDYKTGYNPSPAQARALLDPQLALEAAALRAGAFRDAGS 120 Query: 955 RKVANLFYIRLKQKFK 970 +L Y+RL+ + Sbjct: 121 LTPQDLLYVRLRPGNR 136 >gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 1205 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 86/703 (12%), Positives = 204/703 (29%), Gaps = 94/703 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTIL---------PIIKSLGDVV-----EEKFTA 91 + T++A EL + + P + L ++ + + Sbjct: 70 QILGLTFTRKAAAELGERIRQRLQTLAGSAFMDQLSADDPRREVLKNIAPAVATYDSYAG 129 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 D++ Y L P RL+ A ++ R+ + + L ++ +S A+ L+ Sbjct: 130 DIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSV--IADVCALSDE 187 Query: 152 LADIIDIIETEEKKWEDLHALKNEK----------------YGMWWLLAADFLKIASKYW 195 + + + I E++ L E + + LK+ K + Sbjct: 188 MDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIELLKLVQK-F 246 Query: 196 TERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVA 250 E L E + + +H + +++ + A ++ ++ Sbjct: 247 RETLQERDLLTFGQQMSKAATLVRDHEVVGQDQRRRFRVVMLDEYQDTGHAQRVMLRSLF 306 Query: 251 NHPNGAI----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + D + T + ++ + +LL Sbjct: 307 GDGRAGEGSFSAMAVGDPMQSIYQFRGATASNLEKFRTDFPNAAGEPAEKLQLLTSWRNP 366 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + VS RS + ++ P + A+ D Sbjct: 367 TMVLDMANRVSTWSMERSTEST-------------GRLVSELRPRPGAAEGESAVAFFDE 413 Query: 367 EREEAISIAIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGIN 412 +E +A L+ ++++ +A++ A + +L G+ Sbjct: 414 REQELDWLADKLQSQWRDHQRKLETADDPAKVKPFSAAVLVTVNKDAVPIYEKLVERGVP 473 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D++AG L + + ++L + D +A+ L+ P ++ L+ E Sbjct: 474 ADMTAGPGLLDIPEVADVFAMLRVLVDPTDDVALLRLLTGP--RWNLGAADLAVLTRRAE 531 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 +A RG + I D R A V E A ++ + Sbjct: 532 QIAKRGAGEADAIDDSVMERQRREAIELLRTPGVRDELIEEVLEAIPNATEFSVGLIDAL 591 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----------------------VCLDEH 569 L + S G+ ++ + ++ V H Sbjct: 592 ADLTDAEEMGMSAEGSRRLAQLGRELGYLRRHSLGKNLPDLVADIEKMLGVRTEVLTRWH 651 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 R+ + + + GS +E++ DG K +T+ Sbjct: 652 RRPEQAIGTSHLDKFAQIVRDVSRAGSATPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQ 711 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 IL +++ L +D + + + + + + +++ + Sbjct: 712 ILTVHKAKGLEWDIVAVPHASRERYGDYSQPRSESAWTIKARV 754 Score = 72.6 bits (176), Expect = 4e-10, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 58/238 (24%), Gaps = 30/238 (12%) Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 L L+ + + + +E L D Sbjct: 951 RPAPGATADGAPTTLAEAWDLETNLLLEEFSAMDNAELVVPLNVRMTATEAVSLRKDNQE 1010 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 R + + RGT FHN + E K+ + ++ ++ Sbjct: 1011 FALRAR-RPIPLEPKPY----AKRGTAFHNWVEERYKQVSLLDEDQLPGASDATLED--- 1062 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + +FL E + + V + I G D Sbjct: 1063 -------------PYLETLKDAFLRSEWADR---QPESVEGAYSVTIGGHVFE--GRIDA 1104 Query: 905 IDLL---KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 + + + D+KTG P QL++ A +++ A Sbjct: 1105 VFHDGTDPTAGWIVVDWKTGRKPTGADMDAA-AMQLAVYRLAWAKLLSAKLGVEVPAE 1161 >gi|162451112|ref|YP_001613479.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56'] gi|161161694|emb|CAN92999.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56'] Length = 1045 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 102/939 (10%), Positives = 238/939 (25%), Gaps = 90/939 (9%) Query: 121 NKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW 180 + D P L P+ PA + LA + + +L AL Sbjct: 62 RLATRLALDALPPDRLRQPVEPAARVALAHAIDRALGAFRRAGTSPAELRALGTP----- 116 Query: 181 WLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 + +A + + ++ +R+ + I G+ P Sbjct: 117 YAIAIAEVLDRADAALRAARLVDPRCAGFLLARALRSAGASAALPLPREVAIRGAVAWEP 176 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + A G+ +P + + + + P+ + Sbjct: 177 DDLAWVEALHAAVR-ARGGAGVTVELPALPDDGAAPVADALERRWASLEDAPEIAWVPDG 235 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + K + +PP+ + + + + ++ +D A Sbjct: 236 GAEPLAAIAAKTPEGEARAAAAEVAAALGRGIPPERIAVVVPALDDAALEPLRAALAD-A 294 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + + R A + R++L + + ++ + + SA Sbjct: 295 GVRSSEPRGRAAASCPDGRVALALLRLAVGPVRREQAIEILRAPGVHAGAWMDRTSAAEA 354 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + + + + I L+ A+ +R A AL + Sbjct: 355 ERRSTDLAHRLRDVPVEVDRTGRLLIDGLISVVAARRADRRAGTARTPPAAAQEALSDAE 414 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 + L D + + S A + + + ++ L Sbjct: 415 LALGFSVLGGAHGDEDGDDEAWMPHALERLLASARWIGEATTRPEIVRRFLSLLDKLGFG 474 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + + + L+ + E+ + L+ + A Sbjct: 475 EPGIEELRAALRGERRSGGALEAMGAMGQGARAARAIREQAEALARAAYDLGCEERPATA 534 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 I G + ++ + I L D +++ GL+ + + Sbjct: 535 AEIYAELERAAAEQGAGPRGDAGRAGAVRIDVAAGFTALENDVVVVTGLDARAYGGSPGA 594 Query: 661 N-PFLSRVMQSDLNLKTA-----EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR 714 + L ++ L + E+ Q A G R + + +++ P Sbjct: 595 DETLLGEALRGRLPAPSRPATGRERQAAQRAELGWALAGARRVALCYTRGDDSEPNEPHP 654 Query: 715 WLQRLLVLGGTDFFD--------------------NLKKRGQCYLDWTRKLD-------- 746 G + L G+ D ++ Sbjct: 655 LFIAAAAAGAHQRTEPASRVAPDAAPLGPRDAELIALAGGGRPAADLAERIRIERARADF 714 Query: 747 ----------------YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 + + R + + I++ + +A +ARR+ Sbjct: 715 FLDPRAPIDLHTGRVLVDRDPALAAQLRAAIGGAHPDRPIAVTHIERAVGCAFAAFARRV 774 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKENLP 849 L + + D +RGTL H + + + + + + Sbjct: 775 LHVRRAEDLAESADARERGTLIHRALQASFEALRELGPERDPAEQLAAARAAAEAALGVS 834 Query: 850 PHIDIIWRHLFHKISHSFLEHEEK--------IQSSIEKIFVNIPAKM------------ 889 + + R K +E + + Sbjct: 835 APMAPLRREAVEKAIADVMEVVARTLDGDGEDASPELRFFLAERRFGAGEPPPWQPLELP 894 Query: 890 ----AIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + G DR+D V + DYKTG P + ++ QL L +A Sbjct: 895 PLSDEEGGPSLWVDGQIDRLDRSTDQRVVRVVDYKTGKLPDAKERRR--ALQLPLYSAIA 952 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + YI ++Q+ I+ + A Sbjct: 953 ARAL-----GAEEVRAVYIGVRQRGLIELWPRTAEDQRA 986 >gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4] Length = 777 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 94/739 (12%), Positives = 208/739 (28%), Gaps = 113/739 (15%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E++ + G + +P + + + + Sbjct: 67 SQILAVTFTNKAAREMQMRVGYLLGSFAENMPWLGTFHSIAAKM---------------- 110 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + I W AK LA IID + Sbjct: 111 -LRRHAELVGLKSDFIILDTDDQIRLLKQLIQGQGIDEKQ--WPAKQLAGIIDRWKNRGL 167 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + E+ + + F+ + +RL+ LNA + ++ +H Sbjct: 168 TPDKIA--GKEEDSLLMVKVLRFIL----AYQKRLLSLNACDFGDLLLHMLVILTQHREV 221 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + A + +A + D W + Sbjct: 222 LDSYHDRFRYIMVDEYQDTNQAQYLWLRLLAQKNRNICCV--GDDDQSIYSWRGAEVANI 279 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + + + R Sbjct: 280 LRFEEDF-----PGAKIIRLEHNYRSTPQILGAASGLITHNNAR---------------- 318 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAI-SIAIA--LRMSLDENKKKSALITADR 396 L + + V +I + EEA +A LR + K A++ + Sbjct: 319 -----LGKTLWTERDQGEKVKIIGVWDGAEEARQLVADVQNLRRANIPLNK-MAILIRAQ 372 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R + + I G + L I + D +A +V P Sbjct: 373 FQSREFEDIFIAKNLPYRIIGGFRFYERAEIRDALAYLRVIAQPTDDLAFERIVNVPKRG 432 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G + + D + L ++ Sbjct: 433 IGKKAMEKLIFISKTRYSKYQAA--FLDRIPLAEAAEKLVSE------------------ 472 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L I Q + L+ + + +S +D T+ + DE L Sbjct: 473 ----KTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKML--------DESGYKVMLR 520 Query: 577 FEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + ++ + E ++ + +++ ++ ++D + ++ Sbjct: 521 AVNDVQSAGR-LENLTELARAMEEYDDLGSFLEHVSLVMD----HENDPIDDKITLMTMH 575 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FD + L G EGV+P + + + L + E+ A A Sbjct: 576 AAKGLEFDHVFLPGWEEGVFPSQRSLD---------EGGLNSLEEERRLAYVGITRAKKC 626 Query: 695 RHLIYTRSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 + + + R + SR++ L + L+K+ + D + Sbjct: 627 CTIFHAANRRVYGQWIASTPSRFISELPDDHIEE-KSLLRKKTPIWRDIWAEDRSKNPAY 685 Query: 753 HYKRPKPFPPLEAQPRTYS 771 + + PP + R + Sbjct: 686 NSAKEAITPPWQLASRRGA 704 >gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74] gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74] Length = 966 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 84/877 (9%), Positives = 221/877 (25%), Gaps = 120/877 (13%) Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 L L ++ L + + + + L +N+ ++ +D+ Sbjct: 89 LGTLHSLFLRLLEEYREYTRLKRSYRILDDFDQQFVLYRNINRFME--------IDDIEV 140 Query: 172 LKNEKYGMWWLLAADF---------------------------LKIASKYWTERLVELNA 204 L E W A+D L A + E L+E N Sbjct: 141 LVGEPTRPRWERASDLVRLLNRVSEEYLDPIVLASSTDIPVRVLGEAYSIYREILLEENV 200 Query: 205 SSPVGYQIA---LMRAEAEHLMKGTK--GPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 Q L+ + + L K + ++I + R++ + + V+ Sbjct: 201 LDFSVIQTEFLYLLENQPQILDKLQEKFRYLMIDEYQDTNTIQERIILLLTGPRHNLCVV 260 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D + + ++ + L Sbjct: 261 --GDDDQGLYRFRGASIRNILEFPDHFPAEKCTVIRLETNYRSHPDIITFYNNW------ 312 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + ++ R + + + + + + + + + +R Sbjct: 313 ------MTRMDWTGGTSTTFRYDKTIVPRTEKFHTSPAVIRVGASGSPEQYHEEVLEFIR 366 Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 +L+ + + L R N + A + + F+ Sbjct: 367 ----------SLLASGKITDLNQIAMLFRSVKNDQVLALTEFLEENGVPVFSPRSALFFE 416 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 ++ I + L F + L Sbjct: 417 RDEVKLILGALIF-LFPNLFEALKWQDDAQLSIWDRYQ------------EWKLFFANAL 463 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + + + + ++ + D L S++ + +T Sbjct: 464 RADPAKHRDLIQWARQTAKIHAAMADSTTYAFAAL------LYQLLEFPLFSEFLNVNMT 517 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDII-TRLIDGET 617 + + + L ++ S ++ +++ + I Sbjct: 518 DPKRDLRAAYNIALLSKILYRFEYLYNVTILTPKNQQSVLQNFFNQYLRFVYEGGIQEYE 577 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 ++ S + + +++ L F +++G LN + A + + ++ Sbjct: 578 DFDEMAPSGCISFMTIHQAKGLEFPVVMVGSLNAVPRTQREAVD-LTPYLHKAPFEPAEE 636 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + ++L+ + + S++ ++ Sbjct: 637 THRFDFWRLYYTAFSRPQNLLVLTTREKQGQGRSPSKYFDQVHYSL------------PS 684 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + + +LD T P+ + S I N P + Sbjct: 685 WRSPSFRLDDFTFDSL-------KPVNIKHEYSFTSHILLYENCPLQYKF-----YKELK 732 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 + G+L H I ++ + + K L R Sbjct: 733 FVEVRTGGVLGGSLLHQTIEDIHRHVLRGEPHNELTDEKIKSWYDLNYNLLAKQQRSQLR 792 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 + Q+ + +++ L G D I+ ++G V++ D Sbjct: 793 QAQLDALLRQILRYRDRQADKWHLIREAEVDVSLVKEDYILKGTIDLIE-GENGTVELVD 851 Query: 918 YKTGDNPK--------KETAQKLIDPQLSLEAAALKA 946 +K+GD P + + QL + A ++ Sbjct: 852 FKSGDKPDVNTTDPRLRRQVNQ-YRRQLEIYAHLVEE 887 >gi|45442647|ref|NP_994186.1| exonuclease V subunit gamma [Yersinia pestis biovar Microtus str. 91001] gi|108813143|ref|YP_648910.1| exonuclease V subunit gamma [Yersinia pestis Nepal516] gi|145598979|ref|YP_001163055.1| exonuclease V subunit gamma [Yersinia pestis Pestoides F] gi|149366980|ref|ZP_01889013.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CA88-4125] gi|162421719|ref|YP_001607584.1| exonuclease V subunit gamma [Yersinia pestis Angola] gi|165927095|ref|ZP_02222927.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939287|ref|ZP_02227836.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166011555|ref|ZP_02232453.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212675|ref|ZP_02238710.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167419896|ref|ZP_02311649.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425266|ref|ZP_02317019.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468470|ref|ZP_02333174.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis FV-1] gi|218928187|ref|YP_002346062.1| exonuclease V subunit gamma [Yersinia pestis CO92] gi|229837726|ref|ZP_04457886.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis Pestoides A] gi|229840947|ref|ZP_04461106.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843047|ref|ZP_04463197.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar Orientalis str. India 195] gi|229903586|ref|ZP_04518699.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis Nepal516] gi|294503036|ref|YP_003567098.1| exodeoxyribonuclease V gamma chain [Yersinia pestis Z176003] gi|45437512|gb|AAS63063.1| exodeoxyribonuclease V gamma chain [Yersinia pestis biovar Microtus str. 91001] gi|108776791|gb|ABG19310.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis Nepal516] gi|115346798|emb|CAL19684.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CO92] gi|145210675|gb|ABP40082.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Yersinia pestis Pestoides F] gi|149290594|gb|EDM40670.1| exodeoxyribonuclease V gamma chain [Yersinia pestis CA88-4125] gi|162354534|gb|ABX88482.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis Angola] gi|165912761|gb|EDR31389.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920991|gb|EDR38215.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165989503|gb|EDR41804.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205967|gb|EDR50447.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962637|gb|EDR58658.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055666|gb|EDR65450.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679356|gb|EEO75459.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis Nepal516] gi|229689923|gb|EEO81982.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697313|gb|EEO87360.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704103|gb|EEO91115.1| exonuclease V (RecBCD complex), gamma chain [Yersinia pestis Pestoides A] gi|262361071|gb|ACY57792.1| exodeoxyribonuclease V gamma chain [Yersinia pestis D106004] gi|262365314|gb|ACY61871.1| exodeoxyribonuclease V gamma chain [Yersinia pestis D182038] gi|294353495|gb|ADE63836.1| exodeoxyribonuclease V gamma chain [Yersinia pestis Z176003] gi|320014152|gb|ADV97723.1| exonuclease V subunit gamma [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1123 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 84/766 (10%), Positives = 188/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + L +L S +L L+ L + + Sbjct: 61 --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE ++ W L + Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + + + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295 H + ++ + I + + HPQ + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290 Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 LL D L + +E+ + + LE+ Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++ + + E + L L + + + Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + D + + + IS +LL+ + Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + +S+W + Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + I D + +D E Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|256826534|ref|YP_003150493.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641] gi|256582677|gb|ACU93811.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641] Length = 990 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 87/809 (10%), Positives = 200/809 (24%), Gaps = 69/809 (8%) Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + + ++ D I W + + + + L+ Sbjct: 135 SYRLWLRAHQRIEYAEMLSLLPDR-IDATHWQVLGVFFLADSLTPFEREFLGALNATLLV 193 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKS------------FLPPDTSDMRNTDILENK 348 + D + + S + P+ ++ + + Sbjct: 194 SGSNGTLTDNSKWVVDEKKSSPSRKANSNACYGTHHVESVETSRAPELCELSHLLFQRSA 253 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSL-----DENKKKSALITADRNLARRVK 403 V + A + +S+ A+ ++ +++ ++ Sbjct: 254 SSKPVNASGAVRVALACGPEAQLLSVHEAILDAVKGADSEQDPSIVVVLPDPLRQFTFSA 313 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK-HPLAKFGFPEK 462 L + GI+ L L + A+A +P A + Sbjct: 314 PLLAQQGISCACQGSKLLCDIDVGRALIDACTLVDDAAAETALAADYSYNPFAGIWYATA 373 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + S + R + + DL + + LS + + Sbjct: 374 FYSDKLHR----GNRLIEQEELLCDLAGHAEEDLQGLIGLIEQDDLPQALSVLESYIVRH 429 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH-RKLPNLWFEEEG 581 + L+I + ++ + ++ Sbjct: 430 FSSQPGYAAEQFAALQYVSRVVEAALAIGKSPAQMIRHVETAQIPLAFDTDSGSQINDQI 489 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDI-ITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + S+I T + E + + + + ++ L Sbjct: 490 DSQIKDTSQIKGTHRVLFCTLDEAAALEPASAHTIIAADMTAQSYPIVENVDAADTLLAK 549 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 + + K +A + + Q A FE T Sbjct: 550 WGLVTTDNKMAASRQKFSAALLAARNRVVMQRTMHNGLADEEQPAALFEEVLDCYRGDPT 609 Query: 701 RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK----R 756 ++ + + G +N Q T + + P + Sbjct: 610 SRDSDDTTTRVPISLAPFTHLSGEEHLVENTLGHAQRVASETDRPIMGSITPQARSFIVL 669 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + + S S+I+ + PY +A+R LKL + +RGT H ++ Sbjct: 670 NRRYHGHTFPGMDLSASQIESYLECPYQWFAKRRLKL---ESLDEGFGPAERGTFIHAVL 726 Query: 817 TELIKKRINK--------NTPEINHLMKQIIDSHFEKENLPPHI-----------DIIWR 857 + + + +M+ + E++ H+ + R Sbjct: 727 ESFYLRFQAEVQPKVTPSTLGQAREVMQAVFSQVAERQFTDRHLVGNRYVPINAWEERQR 786 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES--IGIHLTGFADRIDLLKSGFVDI 915 +LE E ++ S E G +L G DRID ++G V I Sbjct: 787 DKVLDQLLDYLEFECRLLPSFEPWKFEWAYGEDTPYSYAGCNLVGRIDRIDRDRAGQVVI 846 Query: 916 TDYKTG----------DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR- 964 DYK+ + + + Q + A A++ +A + Y+ Sbjct: 847 IDYKSSLSSAYRLHADSSDESSAFELPAKMQALIYAKAVR-----DTLGCPIAAILYVNP 901 Query: 965 LKQKFKIDCITNDKKKYSADELSEKSLKN 993 L + + Sbjct: 902 LDASIQGAWDAGQIGLEELPFAPADARAG 930 >gi|22127042|ref|NP_670465.1| exonuclease V subunit gamma [Yersinia pestis KIM 10] gi|270487369|ref|ZP_06204443.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis KIM D27] gi|21960092|gb|AAM86716.1|AE013917_4 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Yersinia pestis KIM 10] gi|270335873|gb|EFA46650.1| exodeoxyribonuclease V, gamma subunit [Yersinia pestis KIM D27] Length = 1123 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 84/766 (10%), Positives = 188/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + L +L S +L L+ L + + Sbjct: 61 --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE ++ W L + Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + + + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295 H + ++ + I + + HPQ + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYTFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290 Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 LL D L + +E+ + + LE+ Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++ + + E + L L + + + Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + D + + + IS +LL+ + Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + +S+W + Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + I D + +D E Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 781 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 82/723 (11%), Positives = 194/723 (26%), Gaps = 81/723 (11%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E+R +++ G ++ L ++ + + Sbjct: 65 RILAVTFTNKAAREMRERLVQLLGAQAHEL-VVSTFHSSAAMILRREAEAV--------G 115 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + R + + + P P + I KN A + D ++ Sbjct: 116 LTRSFVIYDDGDQLNIVKRAMRE--ARVEPSMQPREILHRIDQEKNAARLPDAMQ---VD 170 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 +DL + K + + L NA + L+ +H Sbjct: 171 ADDLRGMVV--------------KRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPEVL 216 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + P L+ +A P GA ++ D W + + Sbjct: 217 EKYRRRFSHVLVDEFQDTNPVQYELLRLLA-PPPGANLVVVGDDDQSIYRWRGASVDNIL 275 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + T+P + KL + ++ V ++ R Sbjct: 276 GFPN-----TYPGAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAK-------------- 316 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 K+ + ++ + L+ +ER EA +A + E A+ Sbjct: 317 -------KLWSERQRGEHLQLLILRDERAEAQEVARQIHALQREGFIKYSGMAVFYRVNA 369 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + +G + L + + ++ P Sbjct: 370 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDAAAYLRLMVNPRSDADLLRIINTPARGI 429 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + ++L + + + R + +D Sbjct: 430 GDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRLAGVHTLLASLNSFAQGAKDA 489 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 AV + + + L +++ +L+ ++ + + Q L+ Sbjct: 490 ASAVDEMLRETRLVESLTAEGSDE-----SLTRAENLREFLGAAQEFDLNRAAASVAAAA 544 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + L + + + I + ++ ++ Sbjct: 545 AVPAEPEEPLPADLDAAPLSADVPP---LQSFLEQISLVGDADAEVGEGKVALMTLHAAK 601 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FD + L G+ + V+P + A + + F A + Sbjct: 602 GLEFDAVFLTGMEDNVFPHSRALVGEDPDEGEEMA------EERRLCYVGFTRARRRLFV 655 Query: 698 IY--TRSLRENNIPTIASRWLQRLLV--LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 RSL SR+L+ + G + + R+ P Sbjct: 656 SLAQCRSLFGELRYNPPSRFLRDVPPTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 715 Query: 754 YKR 756 R Sbjct: 716 IDR 718 >gi|289208792|ref|YP_003460858.1| exodeoxyribonuclease V subunit gamma [Thioalkalivibrio sp. K90mix] gi|288944423|gb|ADC72122.1| exodeoxyribonuclease V, gamma subunit [Thioalkalivibrio sp. K90mix] Length = 1173 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 111/992 (11%), Positives = 231/992 (23%), Gaps = 126/992 (12%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG--- 82 L +VE + PL P L + T+ V + Q LR I +L Sbjct: 22 LRALVVEWMQRAPLGP--LENETLLVQSNGMAQWLRYALAAHPDADPPGCGIAAALDMQL 79 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK----DLYPESPLSL 138 +L P S + + RL+ + L + Sbjct: 80 PSRFVWSAYRAVLGPEAVPLESPYAKRPLIWRLMRLLPECLARPEFAPLARFLADDDPRD 139 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG------------MWWLLAAD 186 LA+ LAD+ D + W A + W A Sbjct: 140 GGDLRKRHQLAERLADLFDQYQVYRADWLTSWATGRDVLRDARGRETPLAEGDRWQAAL- 198 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 ++ + E + + ++ ++ +E +I+ G + + Sbjct: 199 -WRLLREDIGEGPADTSRATVHARYREAVQGLSERPPGLP-RRLIVFGISSMPGQILEAL 256 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAK 298 +A + + H I + S + Q++ Sbjct: 257 EGLAGVCQILVCVHNPCEHYWADIVADKDLLRATRQRQARKAGMPSVLDDAELHQHAHPL 316 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDIL------------- 345 L + R+ + L + +++ + ++ D + D L Sbjct: 317 LAAWGKQGRDYIGLLDEHDDPTAYDAVLRTLAWKRVDYFEPHGGDCLLHQLQDDIRELRP 376 Query: 346 ----ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRN 397 P + + A E + L D + ++ D + Sbjct: 377 LGETRESWPAVAPDDDSIQFHVAHGPLREVEILHDRLLAHFDADPDLRPRDVIVMVPDID 436 Query: 398 LARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLV 450 + I +S P L LL+ + L+ Sbjct: 437 AYAPHIEAVFGQLPPDDPRYIPYTLSDQGPRGRDPVLIALERLLSLPESRMGVAEVLDLL 496 Query: 451 KHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKN 501 P + F E+ L+ E +R ++ L ++ + Sbjct: 497 DVPALRRRFGIAEEDLTTLHRWAEGAGVRWGLDAEQRAGLGLPEGLEQNTWRFGLRRMLL 556 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN-KNSTCGNLSISDWTKLTVTC 560 + E + + +L + L+T T + + +W Sbjct: 557 GYASGGAGAWQGLEPFDEIGGIEAALLGPMDDLITALTQTWDWLRHAHTPGEWNTRLREL 616 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 L E + L + E + + + Sbjct: 617 LDTFFAGETDAELFT-LGRLREALDQWQADCAEAELDDPLPLGVVREQWLASQEDSGLGQ 675 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLKTAEK 679 + ++ + R + F + L G+N+G +P++ + L R + E Sbjct: 676 RFLAG-SVNFGTLMPMRAIPFRIVCLLGMNDGDYPRSPTPVDFDLMRRDYRPGDRSRRED 734 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL------VLGGTDFFDNLKK 733 A H+ + +N S + +L Sbjct: 735 DRYLFLEALLSARRQLHVSWVGHSARDNESQPPSVLVAQLRDHLAAGWRLQGAEEAGAPS 794 Query: 734 RGQCYLD-------------------------------WTRKLDYTTKQPHYKRPKPFPP 762 R LD W P P Sbjct: 795 RDDPLLDHLTTEHTLQPFSPANFPPDPAQARYFTYAREWEAVHHGDETPAPGAIELPPPD 854 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 R + + + DP + R L + + G + L Sbjct: 855 AADDERVLGPDALMRFLRDPAEAFFRHRLGVVFDREEAPSEDLEPFALAGLEQWQVREAL 914 Query: 820 IKKRINKNTP-EINHLMKQIIDSHFEKENLPPHIDIIWRHL----------FHKISHSFL 868 + ++ E + + + ++ P +I Sbjct: 915 VAAALDHGEDPEAWGPVLEAEAARLQRTGALPLGAAGELERDAMIAESGRLLERIGLRLA 974 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 E++ +E G L G Sbjct: 975 AWPERLPP--VPAVRLGQGGWTLEGAGPALRG 1004 >gi|284051928|ref|ZP_06382138.1| hypothetical protein AplaP_10696 [Arthrospira platensis str. Paraca] Length = 677 Score = 104 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 85/686 (12%), Positives = 174/686 (25%), Gaps = 142/686 (20%) Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSI 239 L + + + L + + + P++I G Sbjct: 103 HNSRRIRDLAQVTNLYKQELFKQGYIDQDELFWQAINFQ------PKPQPLLIYGYFQPQ 156 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P ++ VA + VLP + E + S + L Sbjct: 157 PDQVEFINLVAG-EDSIWVLPTG----KAEFFAKNREAIAYLESEEWQVNYQENNDNFSL 211 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + L D + + ++V Sbjct: 212 GEKLQNCFVDKEEIT------------------------------------------NNV 229 Query: 360 ALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT-RFGINIDIS 416 N E + ++ + E + ++ L+T D + L++ + + + + Sbjct: 230 QCHIYSNLEAEVRGVLSQVKQLMIEGISAREIVLVTQDEKTYAPLLLDMAWEYQLPLRLF 289 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 IPL S + L+ I F + A L+ HPLA + A+ Sbjct: 290 YKIPLRNIRLGSWIALLIEVIENNFPFESTAKLLHHPLA-QYLTYQQWLEARQKRPHNLA 348 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + ++ LK + + VDHI Q Sbjct: 349 EWQELGLNLSLLK------------------------FPESDTRQNWVDHIKQVFKFFDI 384 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 K + ++ ++ V + +R+ E L Sbjct: 385 RKNSSQWPREIVAFNELEAAWVELSKPDGDRLNRQEFCQDILEIISKLKVPMQ------- 437 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + L + ++ + L G EG+ P Sbjct: 438 --------------------------PGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPP 471 Query: 657 NTAKNPFLSRVMQSDLN-----LKTAEKYIGQAAHDFEMANGTRHLIYT--RSLRENNIP 709 +P L L+ L+TA + F + T + + P Sbjct: 472 AIENDPVLDFYESRRLSQLGITLETAIDIAQRNELCFYELLRIPTISLTFSCAEQHYKKP 531 Query: 710 TIASRWLQRLLVLGGTDFF---DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 I S + RL + ++++ + YL KL + Sbjct: 532 LIPSPYATRLGLEMTPPPLLNLASIEEARRYYLQQPEKLSNDVLVNDIIKNWQVEQRRES 591 Query: 767 PRT------------------YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + +S S++ L P+ +A +L L + + + Sbjct: 592 GESPDEYDGVIGVGVDYENRIFSASQLLALGQCPFKWFATYLLGLKEPSEAEAEITGSLG 651 Query: 809 GTLFHNIITELIKKRINKNTPEINHL 834 G L+H + L+ N+ Sbjct: 652 GRLYHRCLELLLTDIKNQTDLRRLER 677 >gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec] gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec] Length = 1088 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 85/876 (9%), Positives = 214/876 (24%), Gaps = 109/876 (12%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGST 236 L + + R E + G +++ Sbjct: 228 ARGRRELAGLVADYRAARRGRDVLDFGDQVTFAARLARYSPEVGAAERTRAGVVLLDEYQ 287 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + A +++ + G V D W + + + + + + Sbjct: 288 DTSVAQRTMLAGLFG--GGHPVTAVGDPCQAIYGWRGASVANLDNFPDHFPCADGTPSAR 345 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L + V+ + R V+ + R L Sbjct: 346 YLLSVNQRSGGRLLTLANAVAAPLRARHHVVELRPRADVVAAGRTLVALHE--------- 396 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINID 414 + +E +A L + ++ A++ R+ R + LT G+ ++ Sbjct: 397 ---------SWAQEVTWVAARLAELVAAGERPGNMAVLVRARSDVRALHTALTAAGLPVE 447 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + L + + ++L + A+ L+ P + G + + L Sbjct: 448 VVGLAGLLDLPEVADVVAVLEVLDSPVANAALVRLLTGPRVRLGPRDLAALGRRARALLH 507 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + D L + V L++ +E++ + + L Sbjct: 508 TTGTTAPTAAGGDGDGSALAEAVAGVDPCDVVALADALTDPGEEISAQGRERAARLGAEL 567 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + G L + T+ + E L + Sbjct: 568 AALR--AHVGDGLLDLLHRVISTIGLDVELAASPRAVAAR-RRENLASFLDAAADFDDPD 624 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 G + + ++ G + + + ++ ++ L ++ + + L+ GV+ Sbjct: 625 GPNSLTSFLGFLRAAREHERGLDI-TGPSGADAVALMTMHRAKGLEWEVVAVPNLSRGVF 683 Query: 655 PK-------NTAKNPFLSRVMQSDLNLKTAEKYIGQAAH------------------DFE 689 P T + + L + E +AA + Sbjct: 684 PDLTVRDRWPTTTGVLPTPLRGDAAELPSYELDDSKAALEAYTEDCREYQEREERRLAYV 743 Query: 690 MANGTRHLIY---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + ++ S +L L + L Sbjct: 744 AFTRAKSVLLGSGHWWGPTQRTRRGPSVFLTELHDHAAEGNGRVDVWTSEPERGGNPALA 803 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP--------- 797 + +P + +E +I A A + Sbjct: 804 VPAEFAWPAPYEPVAFARRREAAAGVAEALAMIRSGQAPPADEPGGMTAREQALLAELDR 863 Query: 798 -------------------HFKKDPDRTDRGTLFHNIIT---ELIKKRINKNTPEINH-- 833 ++ + + + +L + + P+ Sbjct: 864 EAALLLAEERMARAPFRDVPIPASLTASEIVRMRADPVEFARDLARPVPRRPVPQARRGT 923 Query: 834 LMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 ++ F++ E+L D H +S + + P Sbjct: 924 RFHAWVEEMFDQRPLIDVEDLADAADAAVLTDDHDLSGLQAAFLASPYGARRPFALEAPF 983 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAG 947 ++ I + G D + L G ++ D+KTG + QL++ A Sbjct: 984 EVMIGGRAV--RGRIDAVYELGGGRWEVVDWKTGS-------EAADPVQLAVYRVAWAR- 1033 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + V ++ + + + + + Sbjct: 1034 -VRGVAVADVDAAYFYVASGQVVRPPLLGEDEITAL 1068 >gi|47716791|gb|AAT37573.1| salt tolerance-related rstW10 [Sinorhizobium meliloti] Length = 181 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 1/165 (0%) Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 ++A+ +W DI+ L E VKP+ + +FI G LESRL + D ++LGG+NEG WP Sbjct: 1 MEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGINEGTWPGQ 60 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 T+ +PFLSR M++ + L+ E+ IGQ AHDF+MA GTR LI +RS+R+ + PT+ASRWLQ Sbjct: 61 TSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQMACGTRRLILSRSMRQGSAPTVASRWLQ 120 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQPHYKRPKPFP 761 RL LGG LK G YL W R LD +RP+P P Sbjct: 121 RLQALGGERLTALLKANGADYLHWMRILDQRRASXRCXERPEPKP 165 >gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1118 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 104/1047 (9%), Positives = 245/1047 (23%), Gaps = 143/1047 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNP 101 V T++A EL + I + + F L+ + Sbjct: 66 QVLGLTFTRKAAAELSNRVTTALSGSGIIDAAALENSEAQTITTYDSFAGQLVSEHAPRI 125 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + L A + + L + + L + + + Sbjct: 126 GIDPAEHRLTDATRYRLAAQVVAANEFPLVALGEWNDRRLIGALLGLDTMMTQHM--VTG 183 Query: 162 EEKKWEDLHALKNEKYGMWWLLA---------------ADFLKIASKYWTERLVELNASS 206 + + + W A + L + + + L Sbjct: 184 QRIEEFTADYVGGLDEAPLWRGAPYRAVVDAERVAAERLELLGLV-ESYRRAKDRLGWVE 242 Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP-----NGA 256 + +++ + A A L++T+ + P G Sbjct: 243 FADLMAQAATIAERAPEVSTMLREQYRVLLLDEYQDTSSAQATLLTTLFSGPTVAEGRGH 302 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D + W + ++ + + L E L Sbjct: 303 PVTAVGDPYQSIYGWRGAAASNIAEFPTSFPKADGTAANAYSLRVNRRSGPEI---LDGA 359 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + G + LP + E + V + EE IA Sbjct: 360 NVVAQGLQSDPAMPHLPGVDFTLHAAPGQEP---------ATVTTRHFTSSDEELDWIAD 410 Query: 377 AL-RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + E A++ + L+ + +I L S + + L Sbjct: 411 DIAARGALEGYAGIAVLVRRNATIEPLFRRLSARDVPTEIVGLAGLFRLAVISEIVATLR 470 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLD 494 + D A+ L+ + G P+ A N L V +++ Sbjct: 471 LLDDDTDNPALVQLLSSRRWQIGPPDLAALGEAVNRLNAVRSDPSRDQGGATPAADPPAS 530 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 A + +L + + + + + + Sbjct: 531 LRAELARQQEQAGRPMACLMDVLDLPCPGLSQLGSSRLGRFVAEFRELRRHVSEPLPGLV 590 Query: 555 KLTVTCLQNVCL--DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + V + + + + L + G+ + + +++ + Sbjct: 591 RRIVAAMNLGVELLADPGTYSQHMGAQVARFLEVVGDFTDLDGTARLSGFLSYVESVLD- 649 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSR 666 + + ++ +L ++ L +DT+ L L EG +P + + L Sbjct: 650 EEDGMEQALPTADDSVSLLSVHRAKGLEWDTVYLPTLVEGTFPATVRGDNWTTLARLLPS 709 Query: 667 VMQSDLN------------------LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 ++ D + + + R + + Sbjct: 710 PLRGDAGSIPQLGETTKAGLQAFGTDLRSAGQFAEDRLAYVAITRARRHLVATTHVWEPQ 769 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK---------- 758 AS + VL D ++ + + T P P Sbjct: 770 RKTASHTSEYFRVLAQISGGDLPEQPAPDADNPVAAVPATAVWPRPADPDREELVETAAG 829 Query: 759 -----PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 E+ + ++ ++ + ++ H Sbjct: 830 TVQGLIRRLGPGAGGDPGIGELPAQLAGELSLDEQQAYQEWQAEAQLLVRAAREQARDAH 889 Query: 814 NII-----------------TELIKKRINKNTPEIN------HLMKQIIDSHFEK----- 845 ++ + + + ++ F Sbjct: 890 RVVPVESLSASALILSQAEPEQFAANLVRPMPRRASGGAGVGTRFHDWLEQRFRAGSGLL 949 Query: 846 -------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + LP +D + + F EE + + V P + + S + Sbjct: 950 VGDDESSDELPARMDASSQRRLEILQRRF---EEGPYADLTPYRVEAPFILVLGSR--QV 1004 Query: 899 TGFADRIDLLKS---GFVDITDYKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDC 954 G D + L + D+KT DP QL+L A S ++ Sbjct: 1005 RGRIDAVYRLPGSGPHRFQVVDWKT--------FDGPADPLQLALYRLAWAD--VSGVEP 1054 Query: 955 RKVANLFYIRLKQKFKIDCITNDKKKY 981 +V + + + + Sbjct: 1055 DEV-DAVFCHVMSGRVERPTGLPGRDE 1080 >gi|320457795|dbj|BAJ68416.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1098 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 106/856 (12%), Positives = 228/856 (26%), Gaps = 162/856 (18%) Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 I+ + A L VL L + + T + Sbjct: 137 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 196 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 H L F + +++ + ++ ++ MV + S + R D N + Sbjct: 197 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 256 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405 +I + ++ + E A +++ + + + ++ E Sbjct: 257 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 316 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 T GI I+I+A + + + LL++ +I +++ + Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 371 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L I +N + + + + D A L Sbjct: 372 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 405 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 I I + S ++ Q + + + Sbjct: 406 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 464 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 E + + + +++ + +S + +L L + +I Sbjct: 465 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 516 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688 + G +E P + L + DL+ T E+ GQ F Sbjct: 517 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 576 Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +A+ T+ L T N S ++ + GT + + + Sbjct: 577 GVVASATQQLSMTYPKSLRNAAQACSPYISQWET--GTSDTSEIIGASKRAVPTVETEYR 634 Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793 + R P + S S I+ +PY + + LK+ Sbjct: 635 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 694 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKR--------------INKNTPEINHLMKQ-- 837 + F D GT +H ++ + P++ L+ Sbjct: 695 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTAPDMQELIADYS 752 Query: 838 ----------IIDSHFEKENLPPH--IDIIWRHLFHKISHSFLEHEEKIQSS------IE 879 +++ E L + +I R L + ++ + ++ + Sbjct: 753 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 812 Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908 V + G + + G DRID Sbjct: 813 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 872 Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 +S + + DYK+ P + + QL A+A + S V Sbjct: 873 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 927 Query: 958 ANLFYIRLKQKFKIDC 973 A +F++ +K I Sbjct: 928 AGMFFLPIKPSATIRE 943 >gi|299143271|ref|ZP_07036351.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517756|gb|EFI41495.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 904 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 87/245 (35%), Gaps = 11/245 (4%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 R + ++ + PY RILK++ + +KD D G ++H+I+ KK N+ Sbjct: 648 RRGFKVTDFDLYVKSPYTFLFERILKIEEMLRRQKDTYHIDIGNIYHHILERYFKKYPNE 707 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK---ISHSFLEHEEKIQSSIEKIFV 883 + + + ++ + + I +F+E + ++ + Sbjct: 708 LNETMLKAIIK--SELIDELPVSGKYTALDSAKVDGIFSILKNFIELDLSLRDDFIPVGF 765 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY-KTG-DNPKKETAQKLIDPQLSLEA 941 +P + ++ + G DR+D + + DY K+ P ++ Q + Sbjct: 766 EVPINIKLD--KYQINGRIDRVDRKGD-YKILIDYKKSNFGVPTQKDMANKEAFQFPIYI 822 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 A S + + + Y + K K + + ++ + +I + + Sbjct: 823 MAEDKCSIVEAKYGVIKSAEYKSALRDEKYFG-RKMMKIENFEFFIDELKQEVIRLCNEI 881 Query: 1002 QNGEQ 1006 NG Sbjct: 882 YNGNF 886 >gi|51597342|ref|YP_071533.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis IP 32953] gi|153950856|ref|YP_001399973.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis IP 31758] gi|186896449|ref|YP_001873561.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis PB1/+] gi|51590624|emb|CAH22265.1| exodeoxyribonuclease V gamma chain [Yersinia pseudotuberculosis IP 32953] gi|152962351|gb|ABS49812.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis IP 31758] gi|186699475|gb|ACC90104.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis PB1/+] Length = 1123 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 85/766 (11%), Positives = 189/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + L +L S +L L+ L + + Sbjct: 61 --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE ++ W L + Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + + + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------HPQYS------- 295 H + ++ + I + + HPQ + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELSLFRHPQQAEQLFNTD 290 Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 LL D L + +E+ + + LE+ Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++ + + E + L L + + + Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHACHSRQREVEVLQDHLLGLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + + IS +LL+ + Sbjct: 411 MVADIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + +S+W + Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + I D + +D E Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] Length = 1232 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 86/834 (10%), Positives = 191/834 (22%), Gaps = 108/834 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKK--------------STILPIIKSLGDVVEEKFTA 91 V T +A EL + P+I + F Sbjct: 75 RVLGLTFTNKAAGELAERVRRALVTAGIVDQDPDPGATEEAAGEPVIST-----YHAFAG 129 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 LL + L + RLL A + L P P L + Sbjct: 130 QLLKDHGLRVGLEPSARLLADATRFQLAARVLRSA--------PGPYPALTRPFSDLVTD 181 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYWT 196 L + + E L A E A L + + Sbjct: 182 LLALDAELAEHLVPAERLRAYDTELLRTLEGARLTNEALRKVPEAARARQELLGLVEAYR 241 Query: 197 ERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E + AL E +++ +++ + A L+S + Sbjct: 242 EEKRRRDLLDFGDQIAHSATLALDHPEVGRILREQFAVVLLDEYQDTSVAQRLLLSGLFG 301 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G V D W + + + + ++ + L Sbjct: 302 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFRHADNSPARRFAL------------ 349 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 S ++ + + + + + V EE Sbjct: 350 -----SENRRSGGRLLDLANGLAAPLRAMHEGVEALRPAPGAERDGAVRCALLPTHAEEL 404 Query: 372 ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A ++ + + A++ +++ L I +++ L + Sbjct: 405 AWLADSIAHLVRTGTPPGEIAVLCRTAGDFAQIQGALVERDIPVEVVGLSGLLHLPEVAD 464 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNSYDIMDL 488 L ++ + A+ L+ P + G + L R AL + + L Sbjct: 465 LVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARALVFHGGPDGADDDPDLRL 524 Query: 489 KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNL 548 V ++ + + + + L + + Sbjct: 525 AGAVEGTDPSEVISLADALDTFLEAGGGPDDGLPFSAEARIRFARLAAELRELRRSLADP 584 Query: 549 SISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 + ++ T V L E + + + Sbjct: 585 LMDVLHRVLATTGLEVELSASPHALAARRRETLGNFLDVAAAFAGREGGAAVEGEATLQG 644 Query: 609 ITRLIDGETVKPK------IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + K +T+ +L +S+ L +D + + GL +P ++ Sbjct: 645 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQSRES 704 Query: 663 FLSRVMQSDLNLKTAEKYI------------------------GQAAHDFEMANGTRHLI 698 + + L+ + + + + R L+ Sbjct: 705 WTANAKVLPHELRGDARTLPDVTAWDSKGIAAFKDAMKGHQRTEELRLGYVTFTRPRSLL 764 Query: 699 Y---TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 P S +L L ++ + W + + P + Sbjct: 765 LGSGHWWGPTQKRPRGPSAFLDALR--------EHCEAGYGEVEAWAEPPEEGAENPALR 816 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 + ++ + A AR + D G Sbjct: 817 ASAADRAWPLPLDPAALRHRRRAADVVLAHLARIETAGEGPTAQDGGHSSADGG 870 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 50/516 (9%), Positives = 110/516 (21%), Gaps = 49/516 (9%) Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E +++ + D A + + +EL + V Sbjct: 702 RESWTANAKVLPHELRGDARTLPDVTAWDSKGIAAFKDAMKGHQRTEELRLGYVTFTRPR 761 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 L + + S + + + E L + + Sbjct: 762 SLLLGSGHWWGPTQKRPRGPSAFLDALREHCEAGYGEVEAWAEPPEEGAENPALRASAAD 821 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 A ++ + T G + F + Sbjct: 822 RAWPLPLDPAALRHRRRAADVVLAHLARIETAGEGPTAQDGGHSSADGGPFPEPMDDLEP 881 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + + + Sbjct: 882 PEEPEPLEDPEWPAPPEDPYEDADAYGAADDSYEPY---------EDEPYGDGPHADPYG 932 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + + D + R W R LD + +R + P T Sbjct: 933 APEPGVPDITREPAEDELAPEEARLAS--SWDRDLDALAGE--LRRARETVHEVPLPGTL 988 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + S++ +L +DP A + P + RGT FH + + Sbjct: 989 TASQLLRLADDPDAF-----ARELARPMPRPPRPAARRGTRFHAWVEARFEALSLPFLGP 1043 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 +I + +F + V +P ++ Sbjct: 1044 DE-----------LPGGEEDEAEIADERDLTALKEAFARTPYARR---TPYRVEVPVQLT 1089 Query: 891 IESIGIHLTGFADRIDLL----KSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + G D + G +I D+KTG + Q QL++ A Sbjct: 1090 LAGR--IIRGRIDAVYRASGSGPDGGPRYEIVDWKTGRS------QDADPLQLAIYRLAW 1141 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + ++ ++ + + Sbjct: 1142 AEQHGLPLSAVT---AAFVYVRSGEVVRPAGLPGRA 1174 >gi|297580958|ref|ZP_06942883.1| exodeoxyribonuclease V [Vibrio cholerae RC385] gi|297534784|gb|EFH73620.1| exodeoxyribonuclease V [Vibrio cholerae RC385] Length = 1148 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 110/908 (12%), Positives = 237/908 (26%), Gaps = 106/908 (11%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQRFIEQLASGDFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + ++ Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMYGRS--MVISKSFLPPDTSDMRNTDILENK 348 LL + D L +++ + S L +D+ + ++ Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 349 I--------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFAISSHKPSIVAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAIMARFAIDEEEFATAKRWVEEAGIRWGLNSNTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD---FFD 729 ++ + + + L + R +N + S + LL + D Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + + L + A+ + Q D + Sbjct: 771 EHLESDDSGRRLVKHLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 +L++ + D + + + K+R+ + +++ D F + L Sbjct: 831 LLEVSWPME----LDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLED--DEPFALDGLS 884 Query: 850 PHIDIIWR 857 + Sbjct: 885 AYQLRDEL 892 >gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] Length = 1176 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 114/1102 (10%), Positives = 253/1102 (22%), Gaps = 173/1102 (15%) Query: 18 FREMIPALLNGTLVENFRYDPLN--PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 E I ++ L + P L ++ A + G + + Sbjct: 96 LAERINGRVDALLRSGLEIPGFDGEPEDLGRASVSTYHSYAG-----ALVRDHGLRIGVE 150 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P + LG + ++ S+ + + + + + + + ++ Sbjct: 151 PEARLLGGADAHRLMGAVVRSHPVVADTLGVAPSRLITQALRLAGDMAEHLVTADEVRGF 210 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L+ +A+ L I+ D + + Sbjct: 211 LARLAEQGSALPLPPRAKTPSKEIQEFLTGLAD----------------RALMADLVARY 254 Query: 196 TERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E E + R A + +++ + A R+ + + Sbjct: 255 DEVKREQDVMDFGDLLRHAARIAVEVPAAGEQERARFPVVLLDEFQDTSHAQMRIFAGLF 314 Query: 251 NHPN--------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----YSTHPQYSLAK 298 G V D H + + + Sbjct: 315 GPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHAFPRLETGPGGAPRRVNA 374 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 + L I + + + V+N + + + P Sbjct: 375 DVSHLTIAWRNEESILAVANAVAAPLNAHAAATGGAPVEVCTLR-------PRPGAGEGV 427 Query: 359 VALIEADNEREEAI-SIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINID 414 V + EEA +A ++ A++ R V L G+ + Sbjct: 428 VRVDRFVTAEEEAADVVARLGALTGAGPGGTTPSRAVLCRTRAQFGPVLDALDAAGLPYE 487 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL--E 472 + L + + ++L+ + + L+ P + G + + + + Sbjct: 488 VLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSR 547 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 L A R D V + V + + Sbjct: 548 LRAGRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFS 607 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 P + + + + + + L + Sbjct: 608 PEGLARLRAVNAELRRLFTRTGEDPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNAF 667 Query: 592 IETGSCIKA--------NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + A + W + + DG V+ + +L S+ L +D Sbjct: 668 QDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWDV 727 Query: 644 LILGGLNEGVWPKNTAKNPF---------------------------------------- 663 + + GL EG +P A Sbjct: 728 VAVPGLQEGTFPSTRADRWTSPGAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTKY 787 Query: 664 --------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + + A + A L + N P AS + Sbjct: 788 SSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASAF 847 Query: 716 LQRLLVLGGTDFFDNL----------------------KKRGQCYLDWTRKLDYTTKQPH 753 L+ + L G L + + Sbjct: 848 LEEVAGLAGQVPGVALGPAPAEDDLPEANPAAGRTLVARWPFDPLDGPEAFVADPEDPED 907 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH-FKKDPDRTDRG--T 810 +R +P P R + + A A + + D G T Sbjct: 908 EERWQPLPRRSRARREAVEAAAAAVHAADPAALADDPELARQVDWVLLRRRDVAGTGGET 967 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL----------- 859 ++ + + + + +++ + W Sbjct: 968 ALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLEERFGATGMLDID 1027 Query: 860 -FHKISHSFLEH--------EEKIQSSI---EKIFVNIPAKMAIESIGIHLTGFADRIDL 907 + +++ E S FV P + + GI L G D I Sbjct: 1028 SAEDAADLWVDEALDLGPMQEWFRSSRWAERTPAFVEAPVETTV--GGITLRGRVDAIYR 1085 Query: 908 ---------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV- 957 ++ D+KTG P+ + L QL++ A I ++ Sbjct: 1086 SGGDPRLPFDPEADWELVDWKTGAVPRGRDLE-LKSLQLAVYRLAWSR--LHGIPLERIG 1142 Query: 958 ANLFYIRLKQKFKIDCITNDKK 979 A+ Y+ Q+ + +++ Sbjct: 1143 ASFVYVAHGQERSFPDLPGEEE 1164 >gi|302037409|ref|YP_003797731.1| hypothetical protein NIDE2086 [Candidatus Nitrospira defluvii] gi|300605473|emb|CBK41806.1| conserved protein of unknown function, putative ATP-dependent nuclease, subunit A [Candidatus Nitrospira defluvii] Length = 1128 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 101/914 (11%), Positives = 229/914 (25%), Gaps = 67/914 (7%) Query: 90 TADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA 149 LL Y+ L +A L + + ++ ES L A Sbjct: 242 AERLLARYDRPKRRKIELMLAAVADLFALLLAEGLGAVRSFSGESQELLLKDLGAAPTGW 301 Query: 150 KNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTE--RLVELNASSP 207 + D + +E+ ++ + L + +E L + F+++ K + + L Sbjct: 302 EE--DDYEAVESLQRIAKRLLRVDHELLQNLLALLSPFVQLVRKSFLDSGWLTFDGLVGK 359 Query: 208 VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------- 257 + E L + +++ + P ++ +A P Sbjct: 360 ARTLLRDHPPIREQLKR-DYRALLVDEFQDTDPVQYEIVLYLAERPGTQAGSWRETELES 418 Query: 258 --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK-LLDFLDIKREDVKRLG 314 + D + ++ + S + LA + Sbjct: 419 GKLFIVGDPKQSIYAFRRADIEAFDHVVDRLEGSGALRCELATNFRSHAQVLDLVNGVFN 478 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + + P+ S +E ++ + L A R EA I Sbjct: 479 RLLVAQPAIQPPNVPLTVQPNRSSQFRNPGVELRLVASEDDGE---LDSAAATRVEAEQI 535 Query: 375 AIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGINIDISAGIP 420 A+ + L + AL+ A L R GI I Sbjct: 536 ALMVSGLLRPAGQGGEARGPENGLRPGHIALLFRKLTQAEHYLEALRRHGIAYIIDGEKH 595 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L ++L + +D +A+ L++ + + + AL+ A+ Sbjct: 596 FYRRQEVIDLVNILRCVDNPHDRIALVGLLRSAVGGLPDSALVSLQERAALDYRAVERLA 655 Query: 481 NSYDIMD--LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + L+ L + P + + + L L + Sbjct: 656 DWSSSHAEPLRRLYGRLARLHEQAPRCPLPEVLDLIFAQLPVLELAATSLHGEQAVANLF 715 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + + T ++ + + TL ++ I + Sbjct: 716 KVRQMAADLADRPNLT--LNGFVELMLERLTEQPEEAESALSEDTLDAVRVLTIHKAKGL 773 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + + G I + + D L + + Sbjct: 774 EFPLVILAGLHHGDGAGRGPARP-------LIWHDWSTGVQGLDLGDRCSLGAVLVAEKA 826 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 R + + A + + + A R + ++ Sbjct: 827 RTREQAERRRLFYVGMTRARECLVLSG-----ALPRRRVRGALLELLEEAAGAELGRAEQ 881 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + G + +G ++ + + R + + L Sbjct: 882 QDIPVGAVGLRQIVLQGDDRPPARQRERPVELEGAAMDRSFSERWMLRDRNWKAQRSEPL 941 Query: 779 INDPYAVYARRI-LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 + P + ++ GT+ H ++ T ++ + Sbjct: 942 MVSPSDFIQKPAPASERETGRVRRVTPGKTVGTIVHRLLQYW------DFTADVASQVAL 995 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGI 896 I + + + + +F + I +P + Sbjct: 996 IDHTSLALDEPDTVMQEAVIEEVRDLLRTFAQSAAYDRLRRATVIGREVPFLVPWNGGRQ 1055 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKAGSFSQIDC 954 + G D + + G + I DYKT P +L Q L AA++ Sbjct: 1056 IMEGVIDLLYRI-DGALWIADYKTDMIPADQVAARAELYREQARLYRAAVEQSL-----G 1109 Query: 955 RKVANLFYIRLKQK 968 V +I L+ Sbjct: 1110 EPVTGFEFIFLRHG 1123 >gi|229175134|ref|ZP_04302650.1| UvrD/REP helicase [Bacillus cereus MM3] gi|228608270|gb|EEK65576.1| UvrD/REP helicase [Bacillus cereus MM3] Length = 957 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 115/1044 (11%), Positives = 275/1044 (26%), Gaps = 150/1044 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P S ++ ++ + + P ++ + T++A EL + ++ Sbjct: 28 PGSGKTYTLVE-----RILYLIEHRQVEPE---NILVATFTEKAANELVTRISNKL-HEA 78 Query: 73 TI---LPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 I L + ++ + L N + +++ L + Sbjct: 79 NIKFNLNEMYVGTIHSLC--------LRILEENREYTRLKKNYILMDQFDQQYMLYQKLS 130 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + L + SL + ++ L I+ + E L + Sbjct: 131 RFLELDEIESLLNFNTSRWKQSQELLKWINKLSEEIVDINKLIESDEARLS--------V 182 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242 L K + + L+E NA Q+ H ++I + Sbjct: 183 LGKCYKVYEQLLIEENALDFSTIQLETYNLLRNHKDVRNNLNEKLQYLMIDEFQDTNTIQ 242 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 +L+ +A V+ D + T ++ N Q L+ Sbjct: 243 EKLVFLLAGKQQNICVV--GDDDQGLYRFRGATIRNILEFPQNFPKGICQQVELSTNYRS 300 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA-- 360 + + + + ++ + + + + + D Sbjct: 301 NPAIVQFYNQW--MEQNNWSQNGTTYRFDKKITAHESNKVNQKTVVKVSGEDGLDDWESE 358 Query: 361 ---LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRV--KLELTRFGINIDI 415 ++A + E I+ + A + R + L GI + Sbjct: 359 VYLFLQAMKKEGE---ISDW---------NQVAFLFRSVKNPRVLNLSRYLEERGILVYS 406 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 + +L +F + + Sbjct: 407 PRSNLFFERREIRL--ALGAILFLFPMYAQLRKWNDSAFLPEWEFYDACLL--------E 456 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + DL ++ T + L D L Sbjct: 457 FAEELRKPENHDLLRWCKEKARTHVTLNKNLDYAFSGLFYQLIQFELFSDL-------LS 509 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + ++S ++KL + + G ++ F++ I Sbjct: 510 DNVFTVKDSREVRNLSQFSKLLTKFE------YLHHISVFTQKNIGDSVVRFFNQYIRF- 562 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 ++ ID + S + L +S+ L F +I+G L Sbjct: 563 ------------LLQGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPIVIVGSLESTPRK 610 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHL-IYTRSLRENNIP--- 709 + T + L + E+ + + ++L + + N P Sbjct: 611 QYTDVDELLQTDFYQKPPFEPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVANGPGTR 670 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 I S++ Y D T + + + + Sbjct: 671 NIPSKYFTE------------------SYRHLKSWRDEPTIYN-IELAQVKDVNIKREYS 711 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNT 828 ++ S I + L + T GTL H I ++ K N+ Sbjct: 712 FT-SHINLFETCALQYKFYKELGFAPVRQ-----GATIFGTLVHQTIEDIHKSALKNEAY 765 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ +++++ +L + + + ++ + Q+ Sbjct: 766 LITEENIEDWFNTNYQ--HLSKRERVYLAPQTQEAALKQVKSYVEKQNGDWSYIQEAEVD 823 Query: 889 MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPK-KETAQKLID--PQLSLEAAAL 944 +++ L G D + G V+I D+K+ P + L QL + A + Sbjct: 824 VSLVKDKYILKGTIDLV--KGDGDTVEIVDFKSEKKPDLVKEQDALYRYKRQLEVYAHLV 881 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNG 1004 + + ++ L+Y + + KK S + +++K+ IV +++ Sbjct: 882 EERTNYKVSKMH---LYY---TGEKDGNPYVTFKKDKS---VINQTIKSFDRIVDRIESH 932 Query: 1005 EQPFISHLRLSE-----KSNIQSE 1023 + + R + + Sbjct: 933 D--YTIKQRPKKHCGNCDMRFYCD 954 >gi|152971750|ref|YP_001336859.1| exonuclease V subunit gamma [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956599|gb|ABR78629.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1109 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 99/945 (10%), Positives = 234/945 (24%), Gaps = 118/945 (12%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 + V + Q L+ G + I L +L S Sbjct: 19 VLVQSTGMAQWLQMTLAARFGIAANIE---FPLPASFIWDMFVRVLKDIPGESAFSKQSM 75 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 +L L+ + + LS LA +AD+ D +W Sbjct: 76 SWKLMTLLPQHLEED----DFILLRQYLSDDGDKRKLFQLAARVADLYDQYLVYRPEWLM 131 Query: 169 LHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT- 226 + L A +T L + + + Sbjct: 132 RWEAGQRVEGLGDAQQWQAPLWQALVSYTAELGQPQW-HRANLYQRFISTLEKADEPPAG 190 Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI--------------- 270 + I G + P + + + H + ++ + I Sbjct: 191 LPSRVFICGISALPPVYLQALQALGKHVDVYVLFTNPCRYYWGDIKDPAFLAKLLSRQRR 250 Query: 271 ----WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG------------ 314 + + Q LL D L Sbjct: 251 HHREARALPLFRDTEQAPGLFNDAGEQDVGNPLLASWGKLGRDYIYLLAGLERYEELDAF 310 Query: 315 ---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 N ++ I + + +++ + + E Sbjct: 311 VDIAPDNLLHNLQSDILELRNAAVAGQSAEAFAHSRDKRPLALDDRSLSIHVCHSPQREV 370 Query: 372 ISIAIALRMSLDEN----KKKSALITADRNLARRVKLELTRFGI-----NIDISAGIPLS 422 + L L+ + + ++ AD + + IS Sbjct: 371 EVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPYIQAVFGAASGDRWLPWAISDRRARE 430 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNK 480 + +LL+ + L+ P+ +F E+ L + + +R Sbjct: 431 SHPVLQAFITLLSLPDSRFASEDVLALLDVPVLAARFNITEEGLRYLRQWVNESGVRWGM 490 Query: 481 NSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT- 532 + ++ +L + S + + L+ ++ + Sbjct: 491 DDDNVRELDLPATGQHTWRFGLTRMLLGYAMDSREGEWQSVLPYDESSGLIAELVGNLAS 550 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L+ + +++W + L + L + L E + ++ + Sbjct: 551 LLMQLNLWRRGLAQQRPLAEWLPVCRDLLNDFFLPDSETEAALALIE--QQWLAVIDSGL 608 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 E + D + + +D + + + + I + R + F + L G+N+G Sbjct: 609 EAQYGEQVPLTLLRDELAQRLDQQRISQRFLAGP-VNICTLMPMRSIPFKVVCLLGMNDG 667 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIP 709 V+P+ F +M + E L + R +N Sbjct: 668 VYPRTLPPLGF--DLMSQKPQRGDRSRRDDDRYLFLEALMSAEQTLYISYIGRSIQDNSE 725 Query: 710 TIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWT-------------------- 742 S +Q L L G + D + T Sbjct: 726 RFPSVLVQELVDYIGQSHCLAGDEELDCDASEARVKAHITHLHTRMPFDVANFQEDENKS 785 Query: 743 ---RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FI 796 L +Q P + F ++ + P + ++ L+++ Sbjct: 786 YAREWLAAAGQQGEAHSDFIQPLTAPPIDSLPFDQLLRFWQHPVRAFFQQRLRVNFRAEE 845 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLPPHIDII 855 D T G + + +L+ I + +++ + ++ + Sbjct: 846 DDIPDDEPFTLEGLSRYQLNQQLLNTLIEE--QDVSAMFRRFRAAGELPYGAFGELVWET 903 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 R ++ + ++ ++ ++ G++LTG Sbjct: 904 QRLEMQALAERVMAERQQA----------QSMEIDLQCGGVNLTG 938 >gi|258620941|ref|ZP_05715975.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM573] gi|258586329|gb|EEW11044.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio mimicus VM573] Length = 1148 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 115/987 (11%), Positives = 244/987 (24%), Gaps = 137/987 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 LL + DP P I V + Q L+ G + + L Sbjct: 16 LLVHLIKNEPLDDPFIPES-----ILVQSPGMSQWLKMALASELGVAANLE---FPLPAT 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L + L L+ KL D + + L + Sbjct: 68 FIWQMFTQVLPDVPQRSAFNKEAMSWRLMELLP----KLLDREEFQPLQRYLQDDEDDSK 123 Query: 145 AIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 LA+ +ADI D WE + W I + Sbjct: 124 RFQLAEKIADIFDGYLVYRPDWILSWEAGEEVAEIADQHPWQ------PILWRELYAYTR 177 Query: 201 ELN--ASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 E + A + I G + P + + H + Sbjct: 178 EQGHSIYHRANLYQCFIEQLASGNFDRSTWPKRLFIFGISALPPRYIDALRAMGEHIDVH 237 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNT-------------------TYSTHPQYSLA 297 ++L H I + ++ Q SL Sbjct: 238 LMLTNPCQHYWGDIRDRKYLARVAAKKRKLLQINGEQVTVGSEVSPLKGDVESYLQESLH 297 Query: 298 -------KLLDFLDIKREDVKRLGNVSNEMY----------GRSMVISKSFLPPDTSDMR 340 LL + D L +++ I L Sbjct: 298 LSHAVGNSLLASMGKMGRDNLYLLAQNDQSELELFIEIQRDSLLHHIQADILHLQEHQDD 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 P+I + + + E + L + + + ++ D Sbjct: 358 AKFASSGHKPSIAAQDDSLQIALCHSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + LL + L++ Sbjct: 418 NAYAPYIQAVFGNAPGERFIPFSISDRSADQESPILTAFLQLLALPQSRCLASELLELLE 477 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL---------------KSLVLD 494 P +A+F E+ + AK +E +R NS + + L+ Sbjct: 478 TPAIMARFAIDEEEFAIAKRWVEEAGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGY 537 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + + + + ++ L + + L ++ T W Sbjct: 538 AMPAEAGLYELGGQWLAPYNQVQGMSAELAGKLAHFVETLSELRSQLAQTQSMEQWRYWL 597 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +L +L ++ + G + ++T + Sbjct: 598 NELLERC-----FSVDLQGELALKTIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLS 652 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 G + + + + R + F + L G+N+GV+P N F R +Q + Sbjct: 653 GTRISQRFLAG-QVNFCTLMPMRSIPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGD 711 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV------LGGTD 726 ++ + + + L + R +N + S + LL D Sbjct: 712 RSRREESRYL-FLEALLSAKEQLYISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGD 770 Query: 727 FFDNLKKRGQCYLDWTRKLDY--------------TTKQPHYKRPK------------PF 760 G+ +++ + R + + Sbjct: 771 ENLESDDSGRRLIEYLTTQYPMVPFSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDY 830 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIIT 817 + P E+++ P + +R LK+ + + D G + + Sbjct: 831 LLEVSWPMELDLVELQRFWRLPVEYFFKRRLKVSFEPPLAVLEDDEPFALDGLSAYQLRD 890 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 EL++ + + + P L + E+ Sbjct: 891 ELVENLLACRDGAERDQVVAQFAKQQRAQGKLPVAAFGDLELVQSAQQALALAEKIGFLC 950 Query: 878 IEKIFVNIPAKMAI----ESIGIHLTG 900 + + + + + + L G Sbjct: 951 HQPLEDE-EIDLRLQPFDDGREVLLRG 976 >gi|290511198|ref|ZP_06550567.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. 1_1_55] gi|289776191|gb|EFD84190.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. 1_1_55] Length = 1125 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 104/974 (10%), Positives = 244/974 (25%), Gaps = 123/974 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVRYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + D + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFEQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +++ + ++ + R ++ + ++ Q Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQ----------S 940 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G++LTG Sbjct: 941 MEIDLQCGGVNLTG 954 >gi|304312500|ref|YP_003812098.1| Exonuclease V γ-subunit [gamma proteobacterium HdN1] gi|301798233|emb|CBL46455.1| Exonuclease V γ-subunit [gamma proteobacterium HdN1] Length = 1172 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 98/884 (11%), Positives = 220/884 (24%), Gaps = 112/884 (12%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L +E R PL+P L V + Q L+ F E G + + Sbjct: 23 LRDLAIEWVRAHPLSP--LEDEVFIVQSNGMAQWLKLAFAEQKGLGISASMRFTMPSRFL 80 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP------------E 133 + ++L + P S + + R+ ++LP + Sbjct: 81 WQANR--MVLGADSVPETSAFDKSRLVWRIYRWLVHELPAFAEFSAAETEAPAHSFAALR 138 Query: 134 SPLSLPISPANAIWLAKNLADIIDIIETEEKKW------------------EDLHALKNE 175 + L A LA+ LAD+ D + W L + Sbjct: 139 AYLGDASDVAKCFGLAQRLADLFDQYQVYRADWLNDWQQGRDVLRNATGEGAFLADVSVP 198 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAG 234 +W A +I +E + S ++ + E I + G Sbjct: 199 DG-QYWQPAL--WRILLNETSELGQQSGRSKVHQRFLSALSLAKECESEWNLPRRIQVFG 255 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 + ++ +A H + + H I + + + ++ PQ Sbjct: 256 ISSMSTQMLEAIAAIARHAQVMLYVLNPSPHYWMDIMDGRELLGIHRH-RHAHKASLPQG 314 Query: 295 --------SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 + LL + D L + I P + ++ Sbjct: 315 LSSEKMAMRVNPLLAAWGKQGRDYIGLLYHYDANETSHRKIDFFEAPREVEGDTLLACVQ 374 Query: 347 NKIPNIQKCFS-------------DVALIEADNEREEAISIAIALRMSLDENK----KKS 389 + I ++ + V + + E + L ++ + Sbjct: 375 DDIFELRPAPASPADRVPVAAEDLSVQFHLCHSRQREVEVLHDRLLDLMERVPDLQARDI 434 Query: 390 ALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 ++ D + I +S ++ ++ L +LL Sbjct: 435 IVMAPDIEQYAAHVDAVFGNIETDRARYIPFTLSDRRQRASHPLAAALDALLRLPDMRFS 494 Query: 443 FMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVL 493 + L+ P + F E LS + +E +R + L + Sbjct: 495 VSDVLALLDVPAVRKRFDLAETDLSTLRRWMEQAGVRWGLHEAQRSSLDLPVGFAANTWQ 554 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISD 552 + V Q+ + L + + L + + +++ Sbjct: 555 FGLRRMFLGYAVGEGQAWQDVQPFAPVSGLEGALAGKLQALMLALERLWEQFRCVHTVAA 614 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W + E + + + + + + Sbjct: 615 WADNLRAMCDLLFDAEDESDRFILLRFQEAIHDWQMACSEGGIENETLPLLVVRESLLSA 674 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 +D E + + + + R + F + L G+N+G +P++ F + Sbjct: 675 LDSEGLSQRFLAG-CVNFCTLMPMRSIPFRVVCLLGMNDGEYPRSRKPMDFDLMAGRYRP 733 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFD 729 ++ E R + + R ++ S + +L + Sbjct: 734 GDRSRRDDDRY--LFLEALLSARQVFYVSHVGRSIRDDSTRPPSVLVAQLRDYLEAAYCL 791 Query: 730 NLKKRGQCYLDWTRKLDYTTKQP-------------------------HYKRPKPFPPLE 764 + QP P Sbjct: 792 ESDDQEVSSALLDSITFEHPLQPFSARYFGVDPRFFSYAEEWRNAHNAPAGNAANVLPEL 851 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 S ++I+ + +P + L++ + D D Sbjct: 852 RLEFPLSLAQIENFLREPVEWFYATRLEVSQKQEEEADFDNETF 895 >gi|261344762|ref|ZP_05972406.1| hypothetical protein PROVRUST_06026 [Providencia rustigianii DSM 4541] gi|282567206|gb|EFB72741.1| exodeoxyribonuclease V, gamma subunit [Providencia rustigianii DSM 4541] Length = 1124 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 92/774 (11%), Positives = 205/774 (26%), Gaps = 107/774 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LP 76 +++ L+ + P + V + Q L+ E + G + I LP Sbjct: 11 DLLKELIAHLMENEPLSHPFEQE-----IVLVQSPGMSQWLQIELAKRFGIAANINYPLP 65 Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + + F L P S + +L+ I + + + + L Sbjct: 66 AT-----FIWDMFRRVLPDI----PKESAYTKSAMTWKLMTILPDVINEPEFEPL-RHYL 115 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS--KY 194 LA +AD+ D +W W +F+ S + Sbjct: 116 QEDSDKRKLHQLAGRIADLFDQYLVYRPEW-----------IEKWQRN-EFVDGLSSNQL 163 Query: 195 WTERL------VELNASSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPAT 242 W RL ++ L ++ E L I I G + P Sbjct: 164 WQRRLWLCLVEHTDKLQQSPWHRANLYQSFIEQLTSNPSLGQNLPKRIFICGISSLPPVY 223 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA----- 297 + ++ +A H + ++ + I ++ H Sbjct: 224 LQALNAIAEHTDIHLMFTNPCRYYWGDIQSSAFLARLQQRKLRHYIDKHEISRFKIEDHA 283 Query: 298 ---------------KLLDFLDIKREDVKRLGNVSNEMY-----GRSMVISKSFLPPDTS 337 L + + R+++ + + L D Sbjct: 284 GGLFNDLGEQNIANPLLASWGKLGRDNLYFISQIEAANEISAFVDTRRANLLENLQQDIL 343 Query: 338 DMRNTDILENKIP---------NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--- 385 D+ N L + I + S V + + E + L +++ Sbjct: 344 DLENHAQLGITLENYETSQNKRPISELDSSVTFHSCHSAQREVEVLQDRLLALFEQDPTL 403 Query: 386 -KKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + ++ AD + + + I IS L LL+ Sbjct: 404 TPRDVIVMVADIDSYAPYIQAVFGNTSSTHYIPFSISDRKALQAHPILQAFIMLLDLPQS 463 Query: 440 LNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------S 490 + TL++ +F E LS + + +R + ++ L + Sbjct: 464 RFSTEQVLTLLEVSAFAARFDIDESELSLLRRWVNESGIRWGLDDDNVRALSLPVIGQNT 523 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLS 549 + L + + L T + + + Sbjct: 524 WQFGLSRMLLGYAMDSRNGPWNGILPYDECSGLAAQLAGKLALLVDTLRQWRTLLEQERT 583 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + +W + + + + L + + + + D + Sbjct: 584 LEEWKDICQQLIDSCFKVDSETELVLALLT--EQWHKIIENALTSEYQETIPLRLIRDEL 641 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + D E + + + + + R + F + L G+N+G +P++ L + Sbjct: 642 SVCFDDEKISQRFLAGA-VNFCTLMPMRSVPFKVVCLLGMNDGAYPRSIPP---LGFDLM 697 Query: 670 SDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL 719 ++ + K + F A + L + +N P S + L Sbjct: 698 AEKTQRGDRKRRDDDRYLFLEALNSAAQQLYISYIGLSIRDNQPCNPSVLVTEL 751 >gi|218283945|ref|ZP_03489813.1| hypothetical protein EUBIFOR_02409 [Eubacterium biforme DSM 3989] gi|218215524|gb|EEC89062.1| hypothetical protein EUBIFOR_02409 [Eubacterium biforme DSM 3989] Length = 849 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 66/545 (12%), Positives = 137/545 (25%), Gaps = 84/545 (15%) Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +W + E K E K + F+ ++ + + Sbjct: 312 RLEQQALEWIHNHAFLFHALDFIEIAKHIQNLHEHVSKEDLNAFNDVMSLIQDVHTHIHN 371 Query: 605 W--IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +DI+ I + K + I + L + L G N +P + Sbjct: 372 ADDLDILIHQIQNLSANQKANTIEGVLIGSRQDITSLR-PIVFLTGTNANAFPSLKLHSG 430 Query: 663 FLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 NL E + Q F+ + L + S + Sbjct: 431 IFDEAYVKSTNLPNLETRIQNQQTQIFDCLSLCETLYILYPQSDYQGKNYESS--SEIEN 488 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 T + T + + S S ++ Sbjct: 489 WIQTKPKFITTPDSFNW--------TTPSIDLNETSAKAIFFKDNHFKGSISRLESYARC 540 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P++ + L L D RG++ H+++ + K T + Q + Sbjct: 541 PFSHALKYGLFLKEKEDIT---DIRIRGSILHHVLEMISKD-KQDYTSLSKEEIYQYVRK 596 Query: 842 HFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIEKIFV-----NIPAKM--AIES 893 F + W +I+ + E++ S + Sbjct: 597 EFAFAKKVLLQQVTWFNSQIEEITDKLVLIFEQLHSFETNWHMNIDKQEHKFSYSYPWNE 656 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA-----QKLIDPQLSLEAAALKA-- 946 I L G+ DRID + I DYK+ + + + QL+ A + Sbjct: 657 YTIDLYGYIDRID-SSNTSFCIFDYKS----SDKDINLNEFESGLALQLATYTLAYEKES 711 Query: 947 -----GSFSQIDCRKVANLFYIRLKQKFKIDCI--------------------------- 974 G F L Y +L + K+ + Sbjct: 712 NLIPVGCFYIALRTSPETLTYGKLNYRKKVPELNVINEPDMLETFTKNRKLKGWHFNDAS 771 Query: 975 ----------TNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEY 1024 K + + + + + + ++ + +G+ + + + Y Sbjct: 772 IYCDDIKQYMPVKKTNPALETIKSEWSQVIDSLLEDISSGQ----ALPNHVKDACKYCAY 827 Query: 1025 DHLAR 1029 + R Sbjct: 828 RSICR 832 >gi|206580606|ref|YP_002236756.1| exodeoxyribonuclease V, gamma subunit [Klebsiella pneumoniae 342] gi|206569664|gb|ACI11440.1| exodeoxyribonuclease V, gamma subunit [Klebsiella pneumoniae 342] Length = 1125 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 103/974 (10%), Positives = 243/974 (24%), Gaps = 123/974 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + D + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +++ + ++ + R ++ + ++ Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G++LTG Sbjct: 941 MEIDLQCGGVNLTG 954 >gi|319897567|ref|YP_004135764.1| exonuclease v (recbcd complex), gamma chain [Haemophilus influenzae F3031] gi|317433073|emb|CBY81447.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae F3031] Length = 1085 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 116/963 (12%), Positives = 240/963 (24%), Gaps = 137/963 (14%) Query: 56 AIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 Q L+ E + TG + + +P + + A L + L P + L Sbjct: 1 MAQWLQIELAKKTGISANLKFPMP-----ASFIWQ-LYAQNLPATALENPFDKDSMMWRL 54 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW------ 166 RLI I+ K + L S L+ +AD+ D +W Sbjct: 55 MRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEK 112 Query: 167 -------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL-----NASSPVGYQIAL 214 + + + + K + W +V++ +A+ Sbjct: 113 GEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVDVKSDVGDATHRAALHNQF 172 Query: 215 MRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 + A+ K I I G A ++ +++ + + I + Sbjct: 173 LALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAMSSEVDIHLFFNNPCQEYWGDISDL 232 Query: 274 ITEKSTNITSSNTTYSTHPQYSLA----------------------------KLLDFLDI 305 + + Q + + Sbjct: 233 RLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQKENLQEGNPLLAAWGKMGR 292 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 Y + LENK NI + + L Sbjct: 293 DFLYTLVRDEEHIPTYPVNAYQKIESNSLLGQLQSQILHLENKPLNIAENDRTLTLHSCH 352 Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDI 415 + E + L ++ K ++ AD N + I + Sbjct: 353 SAMREVEVLHDYLLDLFNQEPNLTPKDVVVMVADINQYTPYIQAVFGQKNGNAPQIPFSL 412 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---------LAKFGFPEKYLSR 466 S + + S +LL + L+ P LA ++ S Sbjct: 413 SDNKLSESDVLVSSYLALLRLKESNFSAEDVLALLDIPAIRERFNISLADLPLVREWASD 472 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + L + N L + H S L L + Sbjct: 473 SGIRFGLQKNQDGINFNSWQAG--LERMILGYAMREEHGIWQDSLGLNSSYGLKGELAGN 530 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + T L SI W ++ L + + +++ + Sbjct: 531 LSHFFTVLSALHQTLQQA---HSIEKWQEILTALLSDFFVQNEDTSDTIFYIQ------E 581 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFDT 643 +++ E + D+I +I + + + L R + F Sbjct: 582 KINELAEHLKSLHFTEELQADVIADVITMKLEDAPNSLKFLAGKVNFCTLLPMRSVPFKV 641 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702 + L G+N+ +P+ N F + E R + Sbjct: 642 VCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LFLEALLAARDYCYISYV 699 Query: 703 LRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC--------------------YLD 740 R +N P S + +LL +N+ + Sbjct: 700 GRSITDNQPKEPSVLVSQLLDYINQGQSENVLTVIEHPMTAFSPDNFKYNEKFTRSFATK 759 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 W + + + + + + +P + + L + F + Sbjct: 760 WLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVKFFFEKQLGVYFRDKDE 819 Query: 801 KDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 + D ++ ++ +L +Q +F + + + Sbjct: 820 RIADS-----------ENFTLSGLDNYSLNNDLIYLDEQNFADYFRQAEVKGVLPRAEFG 868 Query: 859 L--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTGFADRIDLLKSGF 912 I + LE +EKI E +I +A++ + I L G+ D + Sbjct: 869 KVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNENQKIRLFGYMDALF--GDNS 926 Query: 913 VDI 915 I Sbjct: 927 QVI 929 >gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] Length = 800 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 83/695 (11%), Positives = 185/695 (26%), Gaps = 108/695 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E++ + G+ + +P + + + V Sbjct: 79 EILAVTFTNKAAREMKERVGRLLGQPAEGMPWLGTFHSIC-----------------VKL 121 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R ELA L + D L + L + + W A+ LA IID + Sbjct: 122 LRRHAELAGLKSNFTILDTDDQLRLLKQ--LVQAANIDDKRWPARMLAGIIDDWKNRALT 179 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + + A Y + + RL ELNA + ++ H Sbjct: 180 PDKVPAADAGAYNNKGV-------ELYAQYQTRLRELNAVDFGDLLLHVVTIFQTHADVL 232 Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + A + +A + D W + Sbjct: 233 EQYQRWFRYILVDEYQDTNIAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 290 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + P + +L + NV R Sbjct: 291 RFEKDF-----PGAHVVRLEQNYRSTPHILAAASNVIRGNESR----------------- 328 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393 L ++ + V LI + EEA I + R N + A++ Sbjct: 329 ----LGKELWTDKPEGEKVRLIGHWDGEEEARWIGEEIDAMQGGTRGVRPMNLDEIAILV 384 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + R + G+ + G + + + D +A +V P Sbjct: 385 RASHQMRAFEDRFLTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSPEDDLAFERIVNAP 444 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + + R + + + + + Sbjct: 445 ----------KRGLGDKAQQTIQRTAREHGVS---------LVQGARIAVEQGLIKGKGG 485 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 +EL L P + + + G + + + Sbjct: 486 AALRELVEGLARWNALTRGPRIEIEDDAVIDDGTAPVRYGPPEVSHIELAQIVLDESGYT 545 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCI--KANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 W ++ + E + + N +++ ++ ++D E + + I+ Sbjct: 546 AHWQNDKTPEAPGRLENLKELVNQLDNFENLQGFLEHVSLVMDNE----QDSGGPKVSIM 601 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G +G++P + + + LK E+ A + Sbjct: 602 TLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLKGLEEERRLA---YVGI 649 Query: 692 NGTRHL-IYTRSLRENN----IPTIASRWLQRLLV 721 + + + + SR++ L Sbjct: 650 TRAEEVCTISFAANRRVFGQWQNAMPSRFIDELPE 684 >gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] Length = 1159 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 87/898 (9%), Positives = 201/898 (22%), Gaps = 110/898 (12%) Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + RL E+ D + + P +A + ++ + Sbjct: 272 AIEPEARLAEIDGFRQRNCILKKDGDPTSMKGAEKNDPSFGDKQQVIADAVREVAERAAL 331 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218 + + + +K W E R Sbjct: 332 LGL-------------AAFVAPQLEAGRAFAKRWEEAKAREGLVDFDDLIHRAARLLSSS 378 Query: 219 -----AEHLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDC 264 + + + I++ + + A ++ + A + D Sbjct: 379 QMADWIRYKLDRSFDHILVDEAQDTNKAQWAIVKALTDDYFDGLGARGDAVRTIFTVGDY 438 Query: 265 HIPTAIWNTITEKSTNITSSNTTYS-THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + ++ + + + R L Sbjct: 439 KQAIFGFQGTSPENFREARDYFRDKMDRAAVAAEEARANANTGRLQEFDLERSYRTNQTV 498 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCF----SDVALIEADNEREE--------- 370 + + + + ++ + E ++ +E Sbjct: 499 LSFVDDAIRAIGPEGLGLDKSDGEHRGSDTPGMVTLWKEIRIAEGGDDADEEKGWLARHD 558 Query: 371 ---AISIAIALRMSLD----------------ENKKKSALITADRNLARRVKLELTRFGI 411 A +IA + D + L+ R LA + L G+ Sbjct: 559 RKLADNIARQVADWFDTKGEGFTLVKGETRRAQAGDVMVLVQKRRELASLIVARLYAHGV 618 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 + + L L L + + + D + +A L+ PL + + + + Sbjct: 619 PVAGVDRLRLGNPLAVKDLMAAIRFAAQPLDDLTLANLLVSPLIGWSQEDLLVFGYRTKG 678 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + + + L I + + + + LV + + Sbjct: 679 VRLWEHLRSSDEPRVAQTVHTLREILRRADFDSPQQLLHWILVGPMDGRRALVARLGREA 738 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + N + ++ WF+ L + Sbjct: 739 NDPIDELLNAANAFAASHVASLQGFIR-----------------WFDAGDGELKREAGEG 781 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + + + + + ++ ++P TL + G E Sbjct: 782 GDQVRVMTVHGSKGLQAPIVILADSAIRPDASGELTLE--------------EQVLGAEE 827 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 A + A + + + +A Sbjct: 828 TNTVPLPALTSDEKVGPVRAVEEVDAARSMQEHWRLLYVAMTRAEEALFIGGSLGPRDAK 887 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 F + + + P + P P E Sbjct: 888 NGPHEDSWYARLAALFDTDTALDDPIWGARWEVGERAPSVPPVETTVPEPVCELPLWAKQ 947 Query: 772 FSEIKQLINDPYAVY-ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 + P A D + RG L H ++ L + + Sbjct: 948 PVGPEPRPPRPLAPSGLGEAEGSDPPLPPEVAAGAARRGVLIHALLERLPEVPRDHRADR 1007 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + Q P +D R + + LE + IP Sbjct: 1008 ARSWLAQQA----------PDLDNTEREEMLARALAVLEEPGFADIFGAQALAEIPLAAT 1057 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALKA 946 +E + G ADR+ + + + D+KT P Q++ AAL+A Sbjct: 1058 VEGQ--VVMGTADRLLVTPE-KITVVDFKTARRPPASQGAIPDSTLRQMAAYVAALEA 1112 >gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14] gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14] Length = 988 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 80/784 (10%), Positives = 185/784 (23%), Gaps = 97/784 (12%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKST------------ILPIIKSLGDVV 85 + V T +A EL + + P+I + Sbjct: 65 GTGQVAPEQVLGLTFTNKAAGELAERVRKALIRAGVTDPDVIDPDDPPGEPVIST----- 119 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 F LL + L + RLL A + L + P P + Sbjct: 120 YHAFAGRLLTDHGLRIGLEPSTRLLADATRYQLAARVLREA--------PGPYPALTRSF 171 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKI 190 L +L + + + EDL A A L Sbjct: 172 PDLVSDLLALDAELAEHLVRPEDLRAWDAGLLDELATAKLSNADLRKVPETAAARRELAG 231 Query: 191 ASKYWTERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLM 246 + E + R E L++ +++ + A L+ Sbjct: 232 LVLCYRAAKRERDLLDFGDQIALAARLAQLPEVGRLLREEFRVVLLDEYQDTSVAQRILL 291 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + G V D W + + + + ++ + L Sbjct: 292 AGLFGGGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFAHADGRPAARQAL------- 344 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 S ++ + + + + + V Sbjct: 345 ----------SENRRSGGRLLDLANGLAAPLRAMHAGVAALRPAPGAERDGLVRCALLPT 394 Query: 367 EREEAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 EE +A ++ + + + A++ + ++ L + +++ L Sbjct: 395 HAEEIAWLADSVAHLVRTGKAPGEIAVLCRTASDFAEIQGALVARDVPVEVVGLSGLLHL 454 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++ + ++ L+ P + G + L + L + R + D Sbjct: 455 PEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGARDLALLGRRARLLVAHARVADDDPD 514 Query: 485 IMDLKSLVLDRIATQKNNTHVPH--WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 +++ A + +S L + + L Sbjct: 515 RRLAEAVEGVDPAEVISLADALDTFLESPLDGRGDDDGLPFSPEARVRFARLAAELRELR 574 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + ++ V L E + + A Sbjct: 575 RALSDPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAANEREASLLA 634 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +T+ +L +S+ L +D + + GL G +P + Sbjct: 635 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSAQGREK 694 Query: 663 FLSRVMQSDLNLKTAEKYI------------------------GQAAHDFEMANGTRHLI 698 + ++ L+ + + + R L+ Sbjct: 695 WTAQAKVLPHALRGDADTLPDVGAWDAKGMKAFHEAMKDHQHTEELRLGYVTFTRPRSLL 754 Query: 699 Y---TRSLRENNIPTIASRWLQRLLVL-----GGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 P S +L+ L G + + + G+ R Sbjct: 755 LGSGHWWGPSQKKPRGPSDFLRALYDHCAAGYGEIEAWADEPAEGEENPALHRAAADQVW 814 Query: 751 QPHY 754 Sbjct: 815 PLPL 818 >gi|110802216|ref|YP_697369.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101] gi|123047632|sp|Q0SWW7|ADDB_CLOPS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|110682717|gb|ABG86087.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101] Length = 1158 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + S S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 779 SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836 Query: 829 -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875 +++ ++D+ + L + F +I + E+ + Sbjct: 837 KWSDLSKENCKNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896 Query: 876 SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922 S E + K+ + +L G DRID L G + I DYKTG Sbjct: 897 SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRIDKLNLDGETYLRIIDYKTGS 956 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + AL S + + + + Y R+ D I K Sbjct: 957 KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011 Query: 981 YSADELSEKS 990 + +E+ + Sbjct: 1012 LTEEEIKSEI 1021 >gi|312171296|emb|CBX79555.1| Exonuclease V gamma subunit [Erwinia amylovora ATCC BAA-2158] Length = 1122 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 96/948 (10%), Positives = 226/948 (23%), Gaps = 110/948 (11%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L S + V + Q L+ E + I + + F L P Sbjct: 28 DPLCSEVVLVQSPGMAQWLQMSLAEEFKIAANI--DFPLPASFIWDMFVRVLPDI----P 81 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S + +L+ I + LP + LS LA +AD+ D Sbjct: 82 KESAFNKSSMSWKLMAILPDMLPGEAFTML-RHYLSDDNDKRKLFQLASRVADLFDQYLV 140 Query: 162 EEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 +W + + + L A +T RL + + Sbjct: 141 YRPQWLNGWEKGRLTEGLGEAQIWQAPLWAALVEYTRRLGQPEW-HRANLYQRFISRLEN 199 Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + I G + P + + + H + ++ + I + Sbjct: 200 SSSRPANLPDRVFICGISALPPVYLQALQALGKHIDIHLLFTNPCRYYWGDIQDYGFLAR 259 Query: 279 TNITSSNTTYSTHP-------------------QYSLAKLLDFLDIKREDVKRLGNVSNE 319 P Q + LL D L Sbjct: 260 LQSRHRRHYLDGRPVPQFRDAENASSLFNDAGEQQTSNPLLASWGKLGRDNLYLLAQMEP 319 Query: 320 MYGRS--------------MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + + + ++ + + + Sbjct: 320 NEVFAFVDIEPTNLLQTLKRDLLELEDHAVIGLQKSEWENSRSKRILAADDRSLVIHLCH 379 Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDIS 416 + + E + L + ++ + ++ AD + + + IS Sbjct: 380 SPQREVEVLQDRLLAMMADDTTLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPFAIS 439 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALELV 474 SLL+ + L++ P +F E+ L ++ + Sbjct: 440 DRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLRLLRHWVAES 499 Query: 475 ALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 +R + + +L + + + L+ + Sbjct: 500 GVRWGLDDDGVRNLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLIAEL 559 Query: 528 LQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + L+ + + W L L + + + L E + Sbjct: 560 AGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFISDAETEAALALIE--EQWQQ 617 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + ++ G D ++ +D + + + + + R + F + L Sbjct: 618 VINYGVQAGYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKVVCL 676 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE 705 G+N+GV+P+ F +M L + E N + L + R Sbjct: 677 LGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYIARS 734 Query: 706 --NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQCYL 739 +N S + L+ + + + Sbjct: 735 IQDNTERYPSVLVSELVEYISQSFCLAEDSARDADASAEAVVKHLHHLHSRMPFAVENFH 794 Query: 740 DWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARRILK 792 + + + PP S + + + P + L Sbjct: 795 PQAEFRSFAAEWLPAASGQGTAHPPFMQSLPEESETVIDFDRLVRFWRHPVRAFFSLRLG 854 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + F PD + + + + + K Sbjct: 855 VSFQLEETGLPDAEPF--SLDGLSRYQVNSLLLNSLIDGKEGGKLYARQRAAGALPYGAF 912 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ + +++ E ++++ G L+G Sbjct: 913 GELFWQEQEAEMSELAARVREQRAAAE------SWEVSLTPGGFTLSG 954 >gi|238787260|ref|ZP_04631059.1| Exodeoxyribonuclease V gamma chain [Yersinia frederiksenii ATCC 33641] gi|238724522|gb|EEQ16163.1| Exodeoxyribonuclease V gamma chain [Yersinia frederiksenii ATCC 33641] Length = 1123 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 90/766 (11%), Positives = 190/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKAITTALIEREPLDNPFEQE---------VVLVQSPGMAQWLQMQLAQQFSIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L + +L S +L L+ L + + Sbjct: 62 ---FPLPATFIWEMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLENPAFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE + N W L + Sbjct: 115 LSDDNDKRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIDNLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + +R E + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIRTLLESDICPAGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290 H + ++ + I + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRQRRHYRESIDVKLFRQPEQAEQLFNAD 290 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 Q LL D L + +E+ + + LE+ Sbjct: 291 GEQDLSNPLLASWGRLGRDHMYLLSQVDEIQEVHAFVDIKPDNLLHGIQHDMLELEDHAI 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 +Q ++L + + E + L L + + + Sbjct: 351 MGTTAETLARSDQKRELQLTDRSLSLHVCHSPQREVEVLQDNLLRLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + AD + + IS +LL+ + Sbjct: 411 MVADIDSYTPYIQATFGNATGNRYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + + ++S+W L Sbjct: 531 MLLGYAMDSTAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQQLNESRALSEWLPL 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + S I D + +D E Sbjct: 591 CRQLLDTFFEPDNETEAVLVLIE--QQWQKVISYGIAAQYPDIVPLNLLRDELASRLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSQRYPSVLVSEL 751 >gi|167968315|ref|ZP_02550592.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Ra] Length = 1031 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 114/1055 (10%), Positives = 256/1055 (24%), Gaps = 151/1055 (14%) Query: 50 YVPTKRAI----QELRSEFIEITGKK------STILPIIKSLGDVVEEKFTADLLLSYNL 99 T++A + +RS + G + + P++ + F LL Y L Sbjct: 4 LTFTRKAAGQLLRRVRSRLARLAGTRLGCGDPAACAPVVST-----YYAFAGSLLRDYGL 58 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 P+ RLL L + + + L + + S +W L + + Sbjct: 59 LLPLEPDTRLLSETELWQLAFDVVSGYDGVLCTDKSPAAVTSIVVRLW--GQLGEHLVDT 116 Query: 160 ETEEKKWEDLHALKNEKYGMWWLL----------------AADFLKIASKYWTERLVELN 203 +L L + + L ER+ Sbjct: 117 RALRDTHVELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGK 176 Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTV--ANHPNGA 256 + R A + +++ + A ++S++ +G Sbjct: 177 VMDFAMQMASAARLAATSPQVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFGGGVDDGL 236 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + D W + + +++ S + +LL + ++ + Sbjct: 237 ALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPVLELLTSWRNPPQALRVANGI 296 Query: 317 SNEMYGR-----------------------------------------SMVISKSFLPPD 335 S E R + PP Sbjct: 297 SAEARRRSVAVRALRPRPDAPPGAVRCALLPDVQAEREWIADHLRMRYQRAEADGVKPPT 356 Query: 336 TSDMRNTDILENKIPNIQKC---FSDVALIEADNEREEAISIAIALRMSLDENKKKSALI 392 + + + I + + ++V + E + LR+ D +A+ Sbjct: 357 AAVLVRRNADAAAIADTLRARGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMR 416 Query: 393 TADRNLARRVKLELTR-FGINIDISAGIPLSTTLHSSILTS--------LLNAIFKLNDF 443 R +L + + +S P + + S + + L +AI Sbjct: 417 VLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSA 476 Query: 444 MAI--------------ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + ++ L R ++ S + Sbjct: 477 EGYSVAGYGRIGALAGELSALRGRLGHSLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPE 536 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 L S S + + + + + P + Sbjct: 537 HLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVH 596 Query: 550 ISDWTKLTVTCLQNVCLD--EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + V + ++ + W + + L G+ Sbjct: 597 AAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAV 656 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRL---LNFDTLILGGLNEGVWPKNTAKNPFL 664 + + + + + + DTL++ G + G Sbjct: 657 ADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEF 716 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIASRWLQRL 719 ++ ++ A + A ++ + ++R Sbjct: 717 LCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERG 776 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYT------TKQPHYKRPKPFPPLEAQPRTYSFS 773 L +L R D P P S S Sbjct: 777 AALVAAAMSADLPGSTTDIDHPPRPGDAPWSTYVDALLAARAHAARGAPARGLPNHLSVS 836 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 + +L+ DP R + +L P G FH + + + + ++ Sbjct: 837 SLVELVGDPVGARQRLMCRLPKRPDPH-----AWLGDAFHAWVQQFYGAELLFDLGDLPG 891 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + P + + R ++ V +P +M I Sbjct: 892 AADREV-------GDPEELAALQRA-----------FTASSWAARTPAAVEVPFEMPIGD 933 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + G D + + G + D+KTG P A + QL++ A + Sbjct: 934 T--VVRGRIDAVFVDPDGGATVVDWKTGKPPHGPAAMRQAAVQLAVYRLAWA--ALRGCP 989 Query: 954 CRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 V FY ++ + A L++ Sbjct: 990 TSSVRTAFYY-VRSGITVVPDELPAPGELAMLLTD 1023 >gi|113953686|ref|YP_730267.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. CC9311] gi|113881037|gb|ABI45995.1| possible exodeoxyribonuclease V gamma chain [Synechococcus sp. CC9311] Length = 1098 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 82/743 (11%), Positives = 192/743 (25%), Gaps = 53/743 (7%) Query: 39 LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYN 98 P + I V T + L + + G + + G + + + Sbjct: 24 DPPGPFEELEIVVNTWPTSRWLGEQLAKANGISALV--RFPFPGSRLRQLVR----CILD 77 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP-----ANAIWLAKNLA 153 L+P + R L +L L D + +S + LA+ LA Sbjct: 78 LDPTSEDPWRAERLVWSVLKVLPGLLDHPSAESLKLWWEQHVSVSGRLNRDHWQLARCLA 137 Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA 213 D +D ++L + + L V + Sbjct: 138 DAVDDYALYR--PQELSQWMKGHGDADLPAHLLWQPELVRALAALLPCEPFGLQVQKAVQ 195 Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 +R + + G + P L+ ++ + L + Sbjct: 196 QLRNGDVSATALPPR-LRLFGISNLAPVQVELLQGLSGLMAIELYLLTPCPELWQRSEQR 254 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSM 325 + L +L + + + + + + Sbjct: 255 RQTLGPAWNTPPDGPWLLESPRLEAILGRMGAEFQLLLEGNGDCFLGQWDQGDLFAAPIQ 314 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQ--KCFSDVALIEADNEREEAISIAIALRMSLD 383 + + P + +++ P + S + + E + + L Sbjct: 315 IAASEQRPATLLEQVQQQLVDGSAPTLTPVDHDSSLRFLACAGPWREVQLVRDQILQWLA 374 Query: 384 EN----KKKSALITADRNLARRVK------LELTRFGINIDISAGIPLSTTLHSSILTSL 433 + + ++T D + + T I ++ ST S +L Sbjct: 375 SDPSLEPRDVLVMTPDVERYAPLLTSVFGDHDATGVNIPWRLTDRSQQSTPGLSQGFMAL 434 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGN-----KNSYDIM 486 L + + L+ +P + R L+ R + D Sbjct: 435 LRLASERLTASGLEGLLANPALQVLQGITATDAVRITECLQQTGFRWGVDGKERGGDDTH 494 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L+ + + + L + ++ + L Sbjct: 495 SLRWCLDRWLLGLILPAEPGLAPGGCAPFQGGLTIQQLEEWWPLLDGLA---QWIIRLRQ 551 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 S S WT L+++ D W ++ + + + + + Sbjct: 552 PHSPSAWTTQLNQLLKHLYGDGGDW---AWEQQAIVEALDTMQQQASECT-LDLDLTVVV 607 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ + ++ + +S L I R + ++L GL+ +P+ + F Sbjct: 608 SILDEALSADSGRFGH-RSGALTISALEPMRAIPHRLIVLMGLDSQGFPRQQERPGFHLL 666 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGG 724 Q L ++ + + +HL+ + + R+ + +Q+ L L Sbjct: 667 EQQRRLGDPSSTDQDRYV-LLEALMSARQHLLISWNARDERKGEELPPAPPVQQWLTLLK 725 Query: 725 TDFFDNLKKRGQCYLDWTRKLDY 747 +R LD Sbjct: 726 EQLTPEQFER-VVLEQPANPLDP 747 >gi|257790996|ref|YP_003181602.1| ATP-dependent nuclease subunit B-like protein [Eggerthella lenta DSM 2243] gi|325830736|ref|ZP_08164120.1| hypothetical protein HMPREF9404_5296 [Eggerthella sp. HGA1] gi|257474893|gb|ACV55213.1| ATP-dependent nuclease subunit B-like protein [Eggerthella lenta DSM 2243] gi|325487143|gb|EGC89586.1| hypothetical protein HMPREF9404_5296 [Eggerthella sp. HGA1] Length = 968 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 86/809 (10%), Positives = 189/809 (23%), Gaps = 72/809 (8%) Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 +A + G A + + + + A+ E Sbjct: 116 AREALPHLTAPVAANAGLSAAERDALMVLERYAELLQEAGCCESSQAAALLPEAMEAPAP 175 Query: 281 ITSSNTTYSTHPQYSLAKLLD---FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + + L + + + ++ + F P Sbjct: 176 LVLAGFDDLDCAEERMTAALAQRTDVVRLDDGCRAPSGADGRASELQGLLERLFKPAMPE 235 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397 +R T + +P + + A ++A +++E + + R+ Sbjct: 236 PLRPTGRVRFLLPAGRYAAPTLVASTV------AQAVADERLRAVEEGRDPLPVAVTARD 289 Query: 398 LARRV---KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 L G +SA + T +L + P Sbjct: 290 PRALFDDVAGALLEAGAASAVSASRAFADTAFGRAFLALHAFACGAWSIAQASDFALGPF 349 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + G A + R + + ++ A + + Sbjct: 350 SGIGIRTACELDAAWRGDRTVERARIAADLARESEAAADALTALEA------------GD 397 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 D LA + + + R + Sbjct: 398 ADGALAGFEARLRARTDLDPAFRAEQLAAVSCARRFAAACSRANAVFDGALPLLERMPVS 457 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + + + A ++ +D + ++ + +L L Sbjct: 458 SSARSARDEGARPDALFMSLDEAAELPACSCAALVLCDLDAGSYPVRLVEDGGTLLLEKL 517 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 D L + + RV+ ++ + + + D Sbjct: 518 GL-GRPADALAASRRRFFRALSSACETVVCERVLNTEDANEAYPSVMFEELLDCYREADA 576 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 L + + L + G+ + +L Sbjct: 577 GEDDRATGLPKPLVAFAMLAGEDALHDNLALVCEGVQPRVGKGGATLSWELSAAGAVSPE 636 Query: 755 KRPKPFPPLEAQPR--------TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 +RP+ P + S S ++ + PY +A R L+L Sbjct: 637 QRPRIVLPRSPREGLRGADAALALSPSALESYLECPYKWFALRRLRLSEPD---AGFGPL 693 Query: 807 DRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFE----------KENL 848 + G+ HN++ + PE L+ + D H E Sbjct: 694 EMGSFSHNVLRSFYEHFREAGHAKVDSATLPEARALLGETFDRHLESQRNLKRSVNPLIP 753 Query: 849 PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM--AIESIGIHLTGFADRID 906 + K FL+ E + E + G L G DRID Sbjct: 754 RTAFERAETADLRKRLVRFLDREALLLPGFEPVRFEFDFGSSEPFPYAGCLLRGSVDRID 813 Query: 907 LLKSGFVDITDYKTG--------DNPKKETAQKLIDP---QLSLEAAALKAGSFSQIDCR 955 + +G + DYK A + P Q + A + + Sbjct: 814 VNGAGQAVVIDYKGSLNGDYALDSASPAAQAGGAVLPHKVQTLMYAQVARK-----VLGL 868 Query: 956 KVANLFYIRLKQKFKIDCITNDKKKYSAD 984 V Y+ + ++ + D Sbjct: 869 DVVGALYVSYGRDRRVSGAFDRTVVGERD 897 >gi|32265524|ref|NP_859556.1| hypothetical protein HH0025 [Helicobacter hepaticus ATCC 51449] gi|32261572|gb|AAP76622.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 730 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 113/363 (31%), Gaps = 36/363 (9%) Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + ++G LESR F ++ NEGV P + FL+ ++ L + T Sbjct: 362 GGKIRVMGVLESRGFAFKKAVIVDFNEGVIPSKQESDLFLNSALRQKLKMPTMRDKERLQ 421 Query: 685 AHDFEMANG-TRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 H + + E+N P+ L + + + L R Sbjct: 422 KHYYYGIFSTADEIAVAYVSNEDNHPSFMLEELMQKSAVKHKNG-----DNFFTLLPQGR 476 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 KL+Y + + P+ T + S++K + P Y ++ + F++ Sbjct: 477 KLEYCEDEISGRLPR----------TLTPSKLKVFLECPRRYYYLYEECMNDLSLFQESA 526 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE-KENLPPHID--IIWRHLF 860 G + H + + K + K + + E + I Sbjct: 527 S---MGNIVHQCLESVYKPYVGKKVILDEKALYKSAQLWLEHSLVSHSALQSAHIEWLKC 583 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 F E + I ++ M + G DRI + +++ DYK Sbjct: 584 E--LKHFFALENGREVEILQLEGE---NMEVSYGDFIFYGRPDRIQKVGE-SIEVIDYKY 637 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA---NLFYIRLKQKFKIDCITND 977 + K ++ QK D A L +F + + +Y +K K + Sbjct: 638 RQSFKVQSLQKSTDF-----ALILYMQAFKAHYPQYAHLAISAWYWDIKGGEKKEENNEK 692 Query: 978 KKK 980 Sbjct: 693 SNI 695 >gi|37524631|ref|NP_927975.1| exonuclease V subunit gamma [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784056|emb|CAE12925.1| Exodeoxyribonuclease V gamma chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1129 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 87/754 (11%), Positives = 188/754 (24%), Gaps = 100/754 (13%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 A I V + Q L+ + E G + I L +L Sbjct: 28 DPFAQEVILVQSPGMSQWLQIQLAERIGISANIS---FPLPATFIWDMFTKVLPDIPKES 84 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S +L L+ L + + L LA +AD+ D Sbjct: 85 AFSKDAMTWKLMALLPQ----LLPEAEFVGLRHYLDQDFDKRKIHQLAGRVADLFDQYLV 140 Query: 162 EEK----KWEDLHALKNEKYGMWWL-LAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 W+ + W L + + P ++ L + Sbjct: 141 YRPQWLESWQQGQLIDGLSDNQLWQKRLWLELTKYTHQLQQ---------PQWHRANLYQ 191 Query: 217 AEAEHLMKGT------------KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 L T + I G + P + + +A H + ++ Sbjct: 192 RFISILENNTEQENSTDFSACLPKRVFICGISALPPVYLQALQALARHIDIHLMFTNPCK 251 Query: 265 HIPTAIW-------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + I + + + Q LL Sbjct: 252 YYWGDIQNYAFLAKLSSRKPRHYKSEQELEYFKDPDNAQSLFNGDGEQDVSNPLLASWGR 311 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--------------- 350 D L + + + R+ LE+ Sbjct: 312 LGRDNLYLLSQLEQSSDIHAFVELEQDNLLHQLQRDILYLEDHAQIGSTKETFENSLKKR 371 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL 406 + ++ + + E + L L++N + ++ AD + + Sbjct: 372 VLDPLDRSLSFHVCHSPQREVEVLQDQLLRLLEDNPSLTPRDIIVMVADIDSYTPYVQAV 431 Query: 407 T-----RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP- 460 I IS +LL+ + L++ P F Sbjct: 432 FGNVSVERYIPFAISDRKARQAHSILQAFITLLDLPQSRFTTEQVLALLEVPALANKFDI 491 Query: 461 -EKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHW 508 E L + +E +R N ++ +L L + ++ P Sbjct: 492 HEDGLRLLRRWVEESGVRWGLNDDNVEELSLPVTGQHTWRFGLTRMLLGYAMDSRSGPWK 551 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + +E LA L + L+ + + +++ W + L+ + + Sbjct: 552 EVLPYDESSGLAAELAGQLA---EFLMQLSYWRKILAESRALTGWLPVCQQLLETFFVSD 608 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + L E + + + + D + D E + + ++ Sbjct: 609 NETELVLAMIE--QQWQKVIVNGLNARYQESVPLVLLRDELALQFDNEKISQRFLAG-SV 665 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 + R + F + L G+N+G++P++ F + + Sbjct: 666 NFCTLMPMRSIPFKVVCLLGMNDGIYPRSIPPLGFDLMAEKGQRGDRKRRDDDRY--LFL 723 Query: 689 EMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719 E L + + ++ S + L Sbjct: 724 EALISAERFLYISYIGKSIRDDTECNPSVLVNEL 757 >gi|301169666|emb|CBW29267.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae 10810] Length = 1126 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 95/758 (12%), Positives = 193/758 (25%), Gaps = 99/758 (13%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST------------------------- 290 + I + + + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENKPLFSEDQLSQLENAQFDVTYQK 315 Query: 291 -HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347 + Q L + + R+ + L + + LEN Sbjct: 316 ENLQLGNLLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---K 624 +++ + +++ E + N ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFNEELQAEVIADVITMQLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719 E R + R +N P S + +L Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQL 759 >gi|145632329|ref|ZP_01788064.1| phosphopyruvate hydratase [Haemophilus influenzae 3655] gi|229843996|ref|ZP_04464137.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 6P18H1] gi|144987236|gb|EDJ93766.1| phosphopyruvate hydratase [Haemophilus influenzae 3655] gi|229812990|gb|EEP48678.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 6P18H1] Length = 1124 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 117/982 (11%), Positives = 244/982 (24%), Gaps = 140/982 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + +Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PTTALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + S +LL + L+ P + Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737 E R + R +N P S + +LL +N + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENALTVIEHPMTA 781 Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 W + + + + + + + Sbjct: 782 FSPDNFKNNEKFTRSFATKWLSIAQFDASSNNSEFAVTMTENPEKIEEVELDALVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK--NTPEINHLMKQII 839 P + + L + F ++ D ++ ++ +L +Q Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYFLNNDLIYLDEQNF 890 Query: 840 DSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----S 893 +F + + + I + LE +EKI E +I +A++ + Sbjct: 891 ADYFRQAEVKGVLPHAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQNEN 950 Query: 894 IGIHLTGFADRIDLLKSGFVDI 915 I L G+ D + I Sbjct: 951 QKIRLFGYMDALF--GDNSQVI 970 >gi|168206215|ref|ZP_02632220.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str. JGS1987] gi|170662334|gb|EDT15017.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str. JGS1987] Length = 1158 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + S S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 779 SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836 Query: 829 -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875 +++ ++D+ + L + F +I + E+ + Sbjct: 837 KWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896 Query: 876 SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922 S E + K+ + +L G DR+D L G + I DYKTG Sbjct: 897 SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGS 956 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + AL S + + + + Y R+ D I K Sbjct: 957 KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011 Query: 981 YSADELSEKS 990 + +E+ + Sbjct: 1012 LTEEEIKSEV 1021 >gi|169343384|ref|ZP_02864388.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str. JGS1495] gi|169298470|gb|EDS80556.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str. JGS1495] Length = 1158 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + S S +++ P+A Y + LK + D G+ H I+ E + K+ Sbjct: 779 SLSVSRLERYAQCPFAYYIQYGLKAKDRK--IYEFTAPDLGSFMHEILDEFTNEIKEKDL 836 Query: 829 -------PEINHLMKQIIDSHFE---KENLPPHIDIIWRH-LFHKISHS--FLEHEEKIQ 875 +++ ++D+ + L + F +I + E+ + Sbjct: 837 KWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQMKR 896 Query: 876 SSIEKIFVNIPA---------KMAIE-SIGIHLTGFADRIDLLK-SGF--VDITDYKTGD 922 S E + K+ + +L G DR+D L G + I DYKTG Sbjct: 897 SDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYKTGS 956 Query: 923 NP-KKETAQKLIDPQLSLEAAALKAGSFSQI-DCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + AL S + + + + Y R+ D I K Sbjct: 957 KKFDLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFRID-----DPILKSKGD 1011 Query: 981 YSADELSEKS 990 + +E+ + Sbjct: 1012 LTEEEIKSEV 1021 >gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804] gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii] Length = 1152 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 98/781 (12%), Positives = 208/781 (26%), Gaps = 60/781 (7%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 LK+A R E + A + ++I + Sbjct: 357 LKLAVAQLHLRFAETREVDFIEIAQRAAHALGSADDPGELLLKLDASIRHLLIDEFQDTS 416 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 A L++T+ +G + D + + P + Sbjct: 417 LAQIHLLATLTAGWQPGDGRTLFLVGDPMQSIYRFRKAEVGLFLQAAEQGVGEISP--TF 474 Query: 297 AKLLDFLDIKREDVKRLGNVSNEM-YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 +L D + V + + R+ + + D++ + + Sbjct: 475 LQLTDNFRSQAGVVDWVNATFRGLLPPRNDAAAGAIAYTDSAAFNPALPGQAVCFHAAFS 534 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 +A E + AL ++ A++ R ++ LT+ GI Sbjct: 535 ADGAGAADAAAEALTVQLVRQALDERDPASRHPVAILVRARGHLGQLVRRLTQAGIRCRA 594 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 +PL+ S L LL A+ D MA ++++ P + ++ Sbjct: 595 VDLVPLAQRHVVSDLVQLLRALSHPADRMAWLSVLRAPWCGLTLHSLHALFG----HDLS 650 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + + + + +L + + Sbjct: 651 TPVPVLLAEALRAQEARPASAPDAAAPGQSLSLWDAPAAQPCRAQRMLPQAEYARLAHVA 710 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + G + ++ W + L + E+ ++L L ++ G Sbjct: 711 PILLDAANASGAMPLAAWLESLWRRL-----GGAGLYASPSAAEDAESLFLLVERLAPHG 765 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A + + +G S + I+ +S+ L FDT+IL GL++ Sbjct: 766 GLDPARLDAALARLYAAPEGG-----AGDGSVVEIMTMHKSKGLQFDTVILYGLHKSPRA 820 Query: 656 KNTAKNPF------------------LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 + F + + L L+ + + +A Sbjct: 821 ERAPLVSFEQSGKRVLFGPVKPRADKEADPISRYLGLREKRRAAYETDRLLYVAATRARH 880 Query: 698 IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 L G + ++ DW T + R Sbjct: 881 RLHLVGNVAVDRATGQPKAPPAASLLGRLWEWLPAEQKMPPPDWQDDASDTDETDGQLRG 940 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 +P L Q + + + +AV A + GTL H + Sbjct: 941 EPLRRLSDQAIETLRARRAAIGSPGFAVGAAVGQGAEHPAWQLDTAHDAAIGTLAHAWLA 1000 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--- 874 + + ++ + ++ + LP + L HE Sbjct: 1001 RIGQDGLSAWPADTLRGYLPVMQKQLTRAGLPAAQAPEAAQAVLDTLLATLAHERGRWLL 1060 Query: 875 -QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 QS+ + + I A + I + L+ + G I DYKT P + + Sbjct: 1061 SQSAARREWPLIDAAGRVSVIDLALS--------TEDG-WLIVDYKT-ARPHPDESPAHF 1110 Query: 934 D 934 Sbjct: 1111 A 1111 >gi|325267673|ref|ZP_08134324.1| exodeoxyribonuclease V gamma subunit [Kingella denitrificans ATCC 33394] gi|324980797|gb|EGC16458.1| exodeoxyribonuclease V gamma subunit [Kingella denitrificans ATCC 33394] Length = 1156 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 89/936 (9%), Positives = 219/936 (23%), Gaps = 94/936 (10%) Query: 41 PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN 100 P LA+ I V ++ + + + G + + + + + ++ Sbjct: 44 PNPLATEHIVVQSQGMRRYIHQFWARHLGIAANL--QFRLPAGLAWQLMREAKPDVPEMS 101 Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 P S I + L +L+ + + L + LA +AD+ D Sbjct: 102 PFASEIMQWRLL-QLLQSPEFMQDETFACVRGVLDDYLKKGGLSRYHLAGQIADVFDQYL 160 Query: 161 TEEKKWEDLHALKNE--KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 W + + + + + + R +A V LM A Sbjct: 161 VYRPDWIEAWSAGRRVAALDAHYQDEQSWQAVLWRELDRR--SGDALHRVQLWHTLMDAL 218 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW------- 271 AE ++ + + G + P L +A H + I + Sbjct: 219 AEGHIRSLPPRLFVFGLSTLAPMYMALFQQIALHRDVHIFALNPCALYWGDLLEPAQILQ 278 Query: 272 --------------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + + H Q++ L D L + Sbjct: 279 RSDEADLALQGHPLLSSWGKQGRDFFNALSEAEAHQEEQHQQFAPEPLSDSLLHSLQFHI 338 Query: 312 RL---GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS----------D 358 + + + R + D+ +I + Sbjct: 339 QNLIQPDDACREGWRERHFAYVSKCAQHDDLIAQNIARQVQAASGDADAQLVAQLHADSS 398 Query: 359 VALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL----TRFG 410 + + A + E + +R+ L +N A++T + + + Sbjct: 399 LQIHSAHSPLRELQILKDQIRLMLQQNPSWQPGDIAVLTPNIEPYAPFIEAVFGQYSDAP 458 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAK 468 + I+ + L + + + L+ +P LA++ L Sbjct: 459 LPYSIADVKLSRKQPALDAIAQTLEVLGSRFEVEKVLALLDNPTILAQWQLTRDDLPLLT 518 Query: 469 NALELVALRGN------KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 A+ + +R D L + + Sbjct: 519 EAVAQLNIRWGSDETERAQYGDDHPLFTWQQGLNRLVLGWMQPAQQNLWHDTAAFDSHPD 578 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + + K+ +I W QN+ + + E Sbjct: 579 HLPVFARFVQFVQFLLDTKHEWQTPATIEQWCGRLRRLSQNLLAPADDADRQAYQQWESS 638 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + +A + + + + + R L F+ Sbjct: 639 LANWQAQADVAQFTEQ-IHADTACEHAQHFLHQSS--EAGFLRGGITFCSMVPMRSLPFN 695 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + L GLN+G++P+ T F + + + L + Sbjct: 696 AICLLGLNDGIFPRQTKAASFDLIAKLPQAGDRARRDDDRYL-FLEAVLSARHVLYLSYI 754 Query: 703 LRENNIPTIASR---------------------WLQRLLVLGGTDFFDNLKKRGQCYLDW 741 R+ + ++R + F + + L Sbjct: 755 GRDIRTDAERAPSTLLGELVDCIASLTDLGSQYLMRRWVTHHPLQAFSPRYFQDESSLQL 814 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK-----QLINDPYAVYARRILKLDFI 796 ++ + P T ++ + +P + + L Sbjct: 815 FSTRQDFADALNHPQAAYAPFANQAACTAEAHPVEQKDLLRFWRNPVRYWLKHHLNWQSP 874 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 P + ++ + + S + + Sbjct: 875 HFNDALPSSEPFLPDQPRRLDNAYLTARLQHQDFADTAARLKAQSLLPAGKIGELTAQDY 934 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + S L + ++ Sbjct: 935 AIRA-AMLDSDLHSQALPHRFGTLHLGESSLHYQLQ 969 >gi|288933722|ref|YP_003437781.1| exodeoxyribonuclease V, subunit gamma [Klebsiella variicola At-22] gi|288888451|gb|ADC56769.1| exodeoxyribonuclease V, gamma subunit [Klebsiella variicola At-22] Length = 1125 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 103/974 (10%), Positives = 243/974 (24%), Gaps = 123/974 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLASRFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLALDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + D + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGDQVPLTLLRDELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFEQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +++ + ++ + R ++ + ++ Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G++LTG Sbjct: 941 MEIDLQCGGVNLTG 954 >gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58] gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58] Length = 1176 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 118/1102 (10%), Positives = 261/1102 (23%), Gaps = 173/1102 (15%) Query: 18 FREMIPALLNGTLVENFRYDPLN--PLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 E I ++ L + P L ++ A + G + + Sbjct: 96 LAERINGRVDALLRSGLEIPGFDGEPEDLGRASVSTYHSYAG-----ALVRDHGLRIGVE 150 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 P + LGD + ++ S+ + + + + + + + ++ Sbjct: 151 PEARLLGDADAHRLMGAVVRSHPVVADALGVAPSRLITQALRLAGDMAEHLVTADEVRGF 210 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L+ +A+ L I+ D + + Sbjct: 211 LARLAEQGSALPLPPRAKTPSKEIQEFLTGLAD----------------RALMADLVARY 254 Query: 196 TERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E E + R A + +++ + A R+ + + Sbjct: 255 DEVKREQDVMDFGDLLRHAARIAVEVPAAGEQERARFPVVLLDEFQDTSHAQMRIFAGLF 314 Query: 251 NHPN--------GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----YSTHPQYSLAK 298 G V D H + + + Sbjct: 315 GPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHAFPRLETGPGGAPRRVNA 374 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 + L I + + + V+N + + + P Sbjct: 375 DVSHLTIAWRNEEAILAVANAVAAPLNAHAAAAGGAPVEVRTLR-------PRPGAGEGV 427 Query: 359 VALIEADNEREEAI-SIAIALRMSLDENKKK---SALITADRNLARRVKLELTRFGINID 414 V + EEA +A ++ A++ R V L G+ + Sbjct: 428 VRVDRFVTAEEEAADVVARLGALTGAGPGGTTPSRAVLCRTRAQFGPVLDALDAAGLPYE 487 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA---L 471 + L + + ++L+ + + L+ P + G + + + + Sbjct: 488 VLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSR 547 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 D + R + + + L E + Sbjct: 548 LRARRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFS 607 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + N+ LS + + L + Sbjct: 608 PEGLARLRAVNAELRRLSTRTGEDPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNAF 667 Query: 592 IETGSCIKA--------NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + A + W + + DG V+ + +L S+ L +D Sbjct: 668 QDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWDV 727 Query: 644 LILGGLNEGVWPKNTAKNPFLSR------------------------------------- 666 + + GL EG +P A R Sbjct: 728 VAVPGLQEGTFPSTRADRWTSPRAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTGY 787 Query: 667 -----------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 + + A + A L + N P AS + Sbjct: 788 SSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASAF 847 Query: 716 LQRLLVLGGTDFFDNL-KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 L+ + L G L + L + T + P + Sbjct: 848 LEEVAGLAGEVPGVALGPVPAEDDLPEANPVAGRTLVARWPFDPLDGPEAFVADPEDPED 907 Query: 775 IKQLINDPYAVYARR------------------------ILKLDFIPHFKKDPDRTDRGT 810 ++ P ARR ++D++ ++D T T Sbjct: 908 EERWQPLPRRSRARRHGVEAAAAAVHAADPAALGDDPELARQVDWVLLRRRDVAGTGGET 967 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL----------- 859 ++ + + + + +++ + W Sbjct: 968 ALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLEERFGATGMLDID 1027 Query: 860 -FHKISHSFLEH--------EEKIQSSI---EKIFVNIPAKMAIESIGIHLTGFADRIDL 907 + +++ E S FV P + + GI L G D I Sbjct: 1028 SAEDAADLWVDEALDLGPMQEWFRSSHWAERTPAFVEAPVETTV--GGITLRGRVDAIYR 1085 Query: 908 ---------LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKV- 957 ++ D+KTG P+ + L QL++ A I ++ Sbjct: 1086 SGGDPRLPFDPEADWELVDWKTGAVPRGRDLE-LKSLQLAVYRLAWSR--LHGIPLERIG 1142 Query: 958 ANLFYIRLKQKFKIDCITNDKK 979 A+ Y+ Q+ + +++ Sbjct: 1143 ASFVYVAHGQERSFPDLPGEEE 1164 >gi|254388944|ref|ZP_05004175.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197702662|gb|EDY48474.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 470 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 94/397 (23%), Gaps = 33/397 (8%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A V + +++A ELR G P + Sbjct: 92 TLVEAVAERVAAGADPARVLVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSFCYAL 149 Query: 89 FTADLLLSY--NLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 A +S ++ + + L+ + D + Sbjct: 150 VRAHQDADLFAETLRLLSGPEQDVMVRELLTGQLDLEADGFDGHR---WPDELRACLTTR 206 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 A + ++ L W AA FL L Sbjct: 207 GFADEVRAVLARSRELGLGPRSLARFAARTGRPDWRAAASFLAEYLDV----LDMQGVLD 262 Query: 207 PVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 ++ L+ A + + + PA RL++ +A G ++ D Sbjct: 263 YAELVHRAVLLAERAGPAPDFPYDTVFVDEYQDTDPAQVRLLTALAG--GGRTLVAFGDP 320 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + + + + DV L Sbjct: 321 DQSIYAFRGADVNGILDFPATFRHPDG--------------RPADVAVLTTSRRSGAALL 366 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE 384 + + + ++ + V E ++A LR + E Sbjct: 367 GATRLLTRRMPLTRLPADKVRAHRELAATRPGGRVETYTFPTPSAELDNVADILRRAHLE 426 Query: 385 NKKKS----ALITADRNLARRVKLELTRFGINIDISA 417 + L+ A V+ LT G+ ++ Sbjct: 427 DGVPWHGMAVLVRAGARSIPAVRRALTAAGVPLETDG 463 >gi|332283342|ref|YP_004415253.1| putative nuclease/helicase [Pusillimonas sp. T7-7] gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7] Length = 1119 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 98/834 (11%), Positives = 211/834 (25%), Gaps = 85/834 (10%) Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R + + D ++ L S ++ I LA + E Sbjct: 291 LRRRVTIKEGFEAKAVYKDDFLRWLNAASESEDWVAMLAGIRLAPREGYTDEQHEVLRLL 350 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 E L + + A S+ L+ L + + + H Sbjct: 351 IEALWLAAAQLNLRFTEAAEVDFTEISQR---ALLALGHADEPTDLLLALDTAIRH---- 403 Query: 226 TKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 I+I + + L+ + +G + D + Sbjct: 404 ----ILIDEFQDTSQSQIDLLERLTSGWQQGDGRTLFLVGDPMQSIYRFRKADVGCFLKV 459 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + +L D + V + ++ + + S N Sbjct: 460 KEQGL--GDITLTALELTDNFRSQANLVDWVNATCGPVFPKENHGGLGAIIYTPSVPFND 517 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNL 398 + + + EA SIAI L A++ R Sbjct: 518 GLDGISAEYHPVWLRKEDADDTGDSVLEAESIAIKLAKEALLKYPDSEHPVAILVRARTH 577 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + L + I + L + L L A+ D +A ++++ PL Sbjct: 578 LDGIVHRLAQQNIPCRAVELVSLRSRQVVIDLAQLARALSHDGDRLAWLSVLRSPLCGLT 637 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + T VP + D+ Sbjct: 638 LNSLHALLGADLT-------------------------------TTVPALLTAWLARDEA 666 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + D + + + + +T G + + W + L Sbjct: 667 GQPGIEDDEARRLRHAASVLLDTGNTSGAMPFAAWLETRWQAL-----GGADIYHGASDR 721 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + L L ++ G + + + + ++ +S+ Sbjct: 722 NDAERLLRLIEELAPYGGLNPVALEDRLAKLYAA--------PSSSGRAVEVMTIHKSKG 773 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L F+++IL GL++ F Q L + +A + Sbjct: 774 LEFESVILAGLHKRPRADTAPLMRFEMGGGQLLLGPIKHKASDEHDPVSTYLAEREKKRA 833 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + + +R Q+L ++G D ++ + +L K P P+ Sbjct: 834 AY--ETDRLLYVALTRARQQLHLIGVVGLDDKMQIKPPAGSSLLGRLWEHIKTPDV--PE 889 Query: 759 PFPPLEAQPRTYSFSEIKQLIN------DPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 T + S + L+ + D + GT+ Sbjct: 890 ASELGSDAGLTATASGGRLLVRMTPDSLPKVPASVAAVGTGTPWQWRPGSGDESVIGTVA 949 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + L K+ + + + + L H + + +E E Sbjct: 950 HAWLERLGKEGMAAWPTQRLDQTLPVFRKQLARAGLAEHALDASAQVLRDTLVATVESER 1009 Query: 873 -KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRID--LLKSGFVDITDYKTGDN 923 + + + L+G ID + + + DYKTG Sbjct: 1010 GAWLLGVARAHREWSL--------LDLSGRVSVIDLAISQEHDWLVVDYKTGVP 1055 >gi|262404647|ref|ZP_06081202.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC586] gi|262349679|gb|EEY98817.1| exodeoxyribonuclease V gamma chain [Vibrio sp. RC586] Length = 1123 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 111/963 (11%), Positives = 241/963 (25%), Gaps = 132/963 (13%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V + Q L+ G + + L + +L + Sbjct: 10 ILVQSPGMSQWLKMALASELGVAANLE---FPLPATFIWQMFTQVLPDVPQRSAFNKEAM 66 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE----K 164 L L+ KL D + + L + LA+ +ADI D Sbjct: 67 SWRLMELLP----KLLDRDEFQPLQRYLQDDEDDSKRFQLAEKIADIFDGYLVYRPDWIL 122 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN--ASSPVGYQIALMRAEAEH- 221 WE + W I + E + A Sbjct: 123 SWEAGDEVAEIADQHPWQ------PILWRELYAYTREQGHSIYHRANLYQRFIEQLASGN 176 Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I G + P + + H + ++L H I + Sbjct: 177 FDRSVWPKRLFIFGISALPPRYIDALRAMGEHIDVHLMLTNPCQHYWGDIRDRKYLARVA 236 Query: 281 IT-------------------SSNTTYSTHPQYSLA-------KLLDFLDIKREDVKRLG 314 ++ Q SL LL + D L Sbjct: 237 AQKRKILQINGEQVTIGSEVSPLKGDVESYLQESLHLNHAVGNSLLASMGKMGRDNLYLL 296 Query: 315 NVSNEMY----------GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 +++ I L P+I + + Sbjct: 297 AQNDQSELELFIDIQRDSLLHHIQADILHLQEHQDDAKFASSGHKPSIAAQDDSLQIALC 356 Query: 365 DNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDI 415 + E + L + + + ++ D N + I I Sbjct: 357 HSPIREVEVLHDRLLAEFERDPSLKPRDVIVMVPDINAYAPYIQAVFGNAPGERFIPFSI 416 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSRAKNALEL 473 S + + LL + L++ P +A+F E+ + AK +E Sbjct: 417 SDRSVDQESPILTAFLQLLALPQSRCLASELLELLETPAIMARFAIDEEEFATAKRWVEE 476 Query: 474 VALRGNKNSYDIMDL---------------KSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 +R NS + + L+ + + + + + Sbjct: 477 AGIRWGLNSDTGAEFELPASEQNTWQFGIERMLLGYAMPAEAGLYELGGQWLAPYNQVQG 536 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 ++ L + + L ++ T W + L + Sbjct: 537 MSAELAGKLAHFVQTLSELRSQLAQTQSMEQWRYWLNELLERC-----FSVDLQGELALK 591 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 +L +L ++ + G + ++T + G + + + + R Sbjct: 592 TIRDSLVNLKQQLADAGYQQAISPAIIRQVLTNKLSGTRISQRFLAG-QVNFCTLMPMRS 650 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 + F + L G+N+GV+P N F R +Q + ++ + + + L Sbjct: 651 IPFRRVCLLGMNDGVYPPNEMVEGFDLRNVQRRVGDRSRREESRYL-FLEALLSAKEQLY 709 Query: 699 YTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDWTRK----- 744 + R +N + S + LL L G + ++ + T + Sbjct: 710 ISYVGRSIQDNSERVPSVLVSELLEYCEQNYCLAGDEHLESDDSGRRLVKHLTTQYPMVP 769 Query: 745 --------LDYTTKQPHYKRPK------------PFPPLEAQPRTYSFSEIKQLINDPYA 784 + + R + + + P E+++ P Sbjct: 770 FSPQAFIAGSFAREWLPAARRQGQSSADFLTPLSDYLLEVSWPMELDLVELQRFWRLPVE 829 Query: 785 VYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 + +R LK+ + + D G + + EL++ + + Sbjct: 830 YFFKRRLKVSFEPPLAVMEDDEPFALDGLSAYQLRDELVEDLLACRDGAERDQVVAQFAK 889 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI----ESIGIH 897 + P L + E+ + + + + + + Sbjct: 890 QQRAQGKLPVAAFGDLELAQSAQQALALAEKIGFLCHQPLEDE-EIDLRLQPFDDGREVL 948 Query: 898 LTG 900 L G Sbjct: 949 LRG 951 >gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] Length = 1124 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 75/808 (9%), Positives = 185/808 (22%), Gaps = 82/808 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN----- 100 V T +A EL + + L D + +DL S Sbjct: 62 EVLGLTFTNKAAAELAERIRKAL----------RKLEDEELDDPDSDLTESVGEPTVSTY 111 Query: 101 -----PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + L L + + + P L LA + + Sbjct: 112 HAYADRLIKEHGLRLGLEPSARLLADATRYQLAVTAVRGPKELRYFKGKVADLADKVLAL 171 Query: 156 IDIIETEEKKWEDLHALKNE-----------------------KYGMWWLLAADFLKIAS 192 + E+L + L Sbjct: 172 DGELSEHLVSPEELREHEEAFIGQAESFRDPKSGKAKRGYTDFLKAAEIARQRVELSELV 231 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMS 247 + + + V + + R E + + +++ + A R++ Sbjct: 232 ERYRDLKVRRDLIDFGDQMVLGARLAEERPEVGAIEREKFKVVLLDEYQDTSVAQRRML- 290 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 V G V D W + + + + + + L + Sbjct: 291 -VGLFGGGHPVTAVGDPCQSIYGWRGASVANLDDFPDHFAKADGARSRGYTLSENRRSGG 349 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++ VS+ + R + + + +D T + + Sbjct: 350 HLLEFANVVSDPLRQRHTGVRELRPSAEKADQGWT-----------------RVGLTETA 392 Query: 368 REEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 EE +A + + ++ A++ N + E+ G+ +++ L Sbjct: 393 EEEVRWVARMVADAHYRGGVSLREIAVLVRKGNQIPPLYEEMHAQGLPVEVVGLSGLVHL 452 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + L ++L+ + + ++ L+ P + G + L + R Sbjct: 453 PEVADLIAMLDVLDEPIANASLVRLLTGPRWRIGARDLALLGMRA-------RELVRDPA 505 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 ++ + + D + + + Sbjct: 506 EYADRAGRDRLAEAVAGSDPTEVVSLSDAMADPGPDLPFSEAARVRFARFASEIRILRRR 565 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + ++ +V + KL E + + A Sbjct: 566 LSEPVLDVLHRVISVTGLDVEVAASPKLVAQRSSETLAAFLVRAADFQDLEGDQSVTAFR 625 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG---GLNEGVWPKNTAKN 661 + + ++ +L +S+ L +D + + G + Sbjct: 626 AYLKAAERHERGIDASLPSQGDSVKLLTMHKSKGLEWDAVFVPHLSGAGQKPRESWIGSG 685 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 L ++ D G A + LR + R+ Sbjct: 686 AVLPYPLRGDAEHLPVLDDAGNTAAFKSFKEQAKEYESWEDLRLEYVTVTRPRYYLTASG 745 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 + + +P P +A + +E + Sbjct: 746 HWWGPTQKKRRGPDTWLSGLFEHCQDGHGEVVAWAAEPDP--DAVNPSLGATEAHWPVLP 803 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRG 809 RR + + + + G Sbjct: 804 DAEAAERRRIGAEMVVTALRRRQAEAFG 831 Score = 71.1 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 74/698 (10%), Positives = 170/698 (24%), Gaps = 67/698 (9%) Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-KC 355 A+ L L ++ ++ R + GR + T + +D + + P++ Sbjct: 487 ARDLALLGMRARELVRDPAEYADRAGRDRLAEAVAGSDPTEVVSLSDAMADPGPDLPFSE 546 Query: 356 FSDVALIEADN-----EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFG 410 + V + R + + L + + + + +A+R L F Sbjct: 547 AARVRFARFASEIRILRRRLSEPVLDVLHRVISVTGLDVEVAASPKLVAQRSSETLAAF- 605 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + L + + L A + + + + K K +A Sbjct: 606 -LVRAADFQDLEGDQSVTAFRAYLKAAERHERGIDASLPSQGDSVKLLTMHKSKGLEWDA 664 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + + L G + S + + + H+P + + Sbjct: 665 VFVPHLSGAGQKPRESWIGSGAVLPYPLRGDAEHLPVLDDAGNTAAFKSFKEQAKEYESW 724 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + Y T + W T + + + Sbjct: 725 EDLRLEYVTVTRPRYYLTASGHWWGPTQKKRRGPDTWLSGLFEHCQDGHGEVVAWAAEPD 784 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + A W + + + + + F I Sbjct: 785 PDAVNPSLGATEAHWPVLPDAEAAERRRI-----GAEMVVTALRRRQAEAFGEPIGAEPA 839 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 + + F NG + R P Sbjct: 840 SEEPQAAEQPDAGAGEGALARSGALEP--------VPFFDENGEPMTDLLPAQRAPEAPG 891 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 R D L+ + +R P P + Sbjct: 892 EPHVIDAEHAATAEDRSAIASWDR-----DLEALLEELKRGDSIQRYAPLP------SSM 940 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S S++ + NDP +L P GT FH I L ++ + Sbjct: 941 SASQLLRYRNDPSRF----RRELARPMPQPPQPSAR-LGTKFHAWIESLFGQQALFEYED 995 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 + + I + ++ +FL + V P ++ Sbjct: 996 LPGAADEEIADEVD---------------LKELQDAFLRTPW---ADSVPAAVEQPFQVV 1037 Query: 891 IESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFS 950 + + G D + G ++ D+KT + + QL++ A Sbjct: 1038 LSGR--VVRGRIDAVYKTPDG-WEVVDWKTSRSQDADPV------QLAVYRLAWAE--MR 1086 Query: 951 QIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + V+ ++ ++ + ++ + + Sbjct: 1087 GVPLSAVS-AAFVYVRGGETVRPTGLPDREELEELFGD 1123 >gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] Length = 783 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 77/709 (10%), Positives = 185/709 (26%), Gaps = 88/709 (12%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E+R +++ G ++ L ++ + + + Sbjct: 61 RILAVTFTNKAAREMRERLVQLLGAQANEL-VVSTFHSAAAQILRREAEHV--------G 111 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + R + + + + + A L + + Sbjct: 112 LTRSFVIYDDSDQLNVVKRAMREAGIESMQPREILHRIDQEKNAARLPEHM--------- 162 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + ++ + ERL NA + L+ Sbjct: 163 -----QVAPGDERG------QLVRKVYAAYQERLRAANAVDFGDLLLLLVTLFRTRPDVL 211 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + P L+ +A P A ++ D W + Sbjct: 212 ENYRRRFHHVLVDEFQDTNPVQYALLKQLA-PPPSANLVVVGDDDQSIYRWRGADVDNIL 270 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 +P + KL + + V + R Sbjct: 271 GFP-----RQYPGAKVVKLEQNYRSDQNILDAAHEVIRKNTRRM---------------- 309 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRN 397 E K+ + ++ + L+ +ER E +A + E A+ Sbjct: 310 -----EKKLWSERQRGQTLNLMLNRDERAEGQEVARQILALQREGFIKLSSMAVFYRANA 364 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + +G ++ L + + ++ P Sbjct: 365 QSRVLEEALRLARVPYTLVSGRSFYDRAEVRDASAYLRLMVNPRSDADLLRIINIPARGI 424 Query: 458 GFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G NA + I L + R+ +N ++ +EE Sbjct: 425 GDTTVERVTDFANARGVSLYEVLSQPEQIPALNGAAVKRLKGFRNLLESLTAFAQTNEEA 484 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + K SD ++ L+ N Sbjct: 485 AGAVDQM-------------LRETKLVETLQAEGSDESQTRAENLREFLGAAQEFDLNRA 531 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + E + + + I + ++ + Sbjct: 532 AAAVAAAANPPSDVPPEVDAAPLTADVPALQAFLEQISLVGEADAEVGDGRVALMTLHAA 591 Query: 637 RLLNFDTLILGGLNEGVWPKNTA---KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 + L FD + L G+ E V+P + A ++ FL+ V + + + +E+ + + Sbjct: 592 KGLEFDAVFLTGMEENVFPHSRAVKSESTFLNEV--ASADGEPSEEMAEERRLCYVGFTR 649 Query: 694 TRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 R ++ RSL SR+L+ + + + + Sbjct: 650 ARKRLFVSLAQCRSLFGELRYNAPSRFLRDVPPALFGISEQEVPEAPRP 698 >gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] Length = 1134 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 79/712 (11%), Positives = 168/712 (23%), Gaps = 48/712 (6%) Query: 228 GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 ++I + L++T+ +G + D + + Sbjct: 404 RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 P +L D + V + V ++ R+ + S + Sbjct: 464 QGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 + A + A+ + A + ++ A++ R+ + Sbjct: 522 PGEAVRFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L + GI +PL + L L A+ D +A ++++ P Sbjct: 582 RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQR 641 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + V L+ + + L Sbjct: 642 LFGADQQTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + ++ + G L ++ W + L P + ++L Sbjct: 688 PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYPGSSAASDAESL 742 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L ++ G + + + T+ I+ +S+ L FDT+ Sbjct: 743 FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696 IL GL+ F + L A A T Sbjct: 797 ILYGLHRAPRGDQAPLVRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856 Query: 697 LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 L+Y + R + L D Sbjct: 857 LLYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWPHLPVPQPPDVAQDQAAAT 916 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 P + + L + A + + GTL Sbjct: 917 GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTL 976 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H + + + + + + + +P S L+ E Sbjct: 977 AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 + + + ++ D + G I DYKTG Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083 >gi|197286157|ref|YP_002152029.1| exonuclease V subunit gamma [Proteus mirabilis HI4320] gi|194683644|emb|CAR44568.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis HI4320] Length = 1125 Score = 103 bits (255), Expect = 3e-19, Method: Composition-based stats. Identities = 95/744 (12%), Positives = 193/744 (25%), Gaps = 86/744 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q L+ + E G + I L + +L S Sbjct: 34 VILVQSPGMSQWLQIQLAESLGIAANIR---YPLPATFIWEMFTRVLSGIPKESAFSKDA 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165 +L L+ + D L LA +AD+ D Sbjct: 91 MTWKLMALLPNY----LDDPAFKPLRHYLKDDEDKRKLHQLAGRVADLFDQYLVYRPDWL 146 Query: 166 --WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAE 220 WE+ + +W A + +TE L + YQ L A Sbjct: 147 SAWENDQLIDGLSDNQYWQKTLWL---ALQRYTEDLAQPKWHRANLYQQFISTLNDAPVG 203 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 L I I G + + + + H ++ + I + N Sbjct: 204 ALAHCFPSRIFICGISALPQVYLQALQAIGRHTEIYLLFTNPCRYYWGDIQDPKFLARLN 263 Query: 281 ITSSNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRL------GN 315 H LL +D + Sbjct: 264 SRKPRHYQQLHELPWFKDEQNASTLFNEEGEQNVGNPLLASWGKLGKDNLYFLSELEYSD 323 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---------IQKCFSDVALIEADN 366 V + L D D+ + + + + I + + + Sbjct: 324 VLDAFVDIPRDNLLHQLQADILDLEDFSQIGQTLEDYQSSEKKRIIANDDRSLTFHASHS 383 Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417 + E + L L+++ + ++ AD + + I IS Sbjct: 384 PQREVEVLQDQLLHLLEQDADLLPRDIIVMVADIDSYTPYIQAVFGNAPAERYIPFAISD 443 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVA 475 +LL + L++ P F E L + +E Sbjct: 444 RKARQVHPVLQAFITLLELPQSRFTAEQVLALLEVPALAAHFAIFENELKLLRRWVEESG 503 Query: 476 LRGNKNSYDIMDL-----------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +R + ++ L+ + ++ P +E L L Sbjct: 504 IRWGLDDENVASFLLPVTGKNTWEFGLLRMLLGYAMDSEAGPWQGVLPYDESSGLVAELA 563 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 H+ L T + ++ +W + + + L + Sbjct: 564 GHLADF---LYTLSEWRTRLSETRNLEEWLDIGQQLVDAFFDTDEETELVLAL--ITQQW 618 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + +E + + D +T D E + + +L + R + F + Sbjct: 619 QKVIKNGLEAHYQHEIPLVLIRDELTVRFDDEKISQRFLAG-SLNFCTLMPMRSIPFKAV 677 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRS 702 L G+N+G++P+N L + ++ + K + F A + L + Sbjct: 678 CLLGMNDGIYPRNIQP---LGFDLMAEKRRRGDRKRRDDDRYLFLEALSSAEKYLYISYI 734 Query: 703 LRE--NNIPTIASRWLQRLLVLGG 724 + ++ S ++ L G Sbjct: 735 GKSIRDDRECNPSVLIKELQDYIG 758 >gi|294789488|ref|ZP_06754724.1| exodeoxyribonuclease V, gamma subunit [Simonsiella muelleri ATCC 29453] gi|294482568|gb|EFG30259.1| exodeoxyribonuclease V, gamma subunit [Simonsiella muelleri ATCC 29453] Length = 1122 Score = 103 bits (255), Expect = 3e-19, Method: Composition-based stats. Identities = 84/745 (11%), Positives = 192/745 (25%), Gaps = 74/745 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 ++ L V+ P A I V ++ + + + G + I Sbjct: 10 LEDLAEMLATLHAVQPV------PSSFAPEQIVVQSQGMRRFINQYLAKKQGIAANI--Q 61 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL- 136 + + LNP + + R RL+ ++++ + + L Sbjct: 62 FSLPAGFSFRLMRETMPDTPELNPFDTEVMRW----RLLDLFQSDEFQQDEFQAARTVLH 117 Query: 137 -SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L A LA LAD+ D W + + +I Sbjct: 118 TYLQNGDYAAYQLAGQLADVFDQYLVYRPNW------IETWHKGQLVDGLSDEQIWQAPL 171 Query: 196 TERLVELNASSPVGYQIAL-MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN 254 L + ++P Q+ + ++ + G P L+ ++ Sbjct: 172 WRYLDDGRQTAPHRVQLWYNLMNILDNPPDWLPERFFVFGIATLAPMYLELLIRLSKMRE 231 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 I + ++ + + HP LL L + D Sbjct: 232 VHIFALNPSAEYWGQVIEP-SQILDKSEILDLSLQGHP------LLASLGKQGRDFFDAL 284 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC-----------------FS 357 ++ S + F ++ + N Q Sbjct: 285 AEADVAVDVSAYDDEYFSGSLLHQLQRDIQTQTLPENSQWREINQTDSENSLDYLKHHDR 344 Query: 358 DVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------T 407 + + A + E + L LD+N A++T + + Sbjct: 345 SIQIHSAHSPLRELQILKDQLLELLDKNPNWRPHDIAVLTPHIEPYAPYLQAVFGQETGS 404 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF-----PEK 462 + +S L +L+ + + + ++ + + F Sbjct: 405 GQALPYSLSDVKLSRQQPFLYALEQVLDLLTSRFEVDKLLGVLDNEIILQKFDLTKKDLP 464 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK-----NNTHVPHWQSRLSEEDK 517 + L + ++ D + L + ++ Sbjct: 465 LIHDTVAKLNIHWGANSEQRAQFGDRQRLFTWQQGLERIVLGWMLPENTRQSLWQGMSPW 524 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 ++ + + + + ++ ++ WT+ + + L + Sbjct: 525 YTRPDYLEILSKFVLLIRVLTKSQQKWQKPADVAIWTERLRELVNQLFLPNDEDRDVIQK 584 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E ++LS ++ + I I R ++ + G + R Sbjct: 585 LE--QSLSEWIAESELAHFHHNLSPEVVIQHIKRFLNQSD--EAGFLRGGITFCGMVPMR 640 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F + L GLN+G +P+NT F + E R + Sbjct: 641 SLPFKVIALIGLNDGDFPRNTKAASFDLIAKHPKKGDRARRDDDRY--LFLEALFSARDV 698 Query: 698 -IYTRSLRE--NNIPTIASRWLQRL 719 + ++ + S L L Sbjct: 699 LYLSFVGKDIRTDEVRAPSTLLNEL 723 >gi|330827919|ref|YP_004390871.1| exodeoxyribonuclease V subunit gamma [Aeromonas veronii B565] gi|328803055|gb|AEB48254.1| Exodeoxyribonuclease V, gamma subunit [Aeromonas veronii B565] Length = 1122 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 119/988 (12%), Positives = 252/988 (25%), Gaps = 119/988 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL LV R PL+ I V + Q L+ E + G + I Sbjct: 11 DLLKELLVSRIRQAPLS-HPFDREQILVQSPGMAQWLKLELAKAFGIAANI--DFPLPAS 67 Query: 84 VVEEKFTADLLLSYNLNP--PVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLSLPI 140 + E FT L +P S +L+ L L+ E + Sbjct: 68 FIWEMFTRVLADVPRQSPYNKGSMSWQLMTILPALLERPAFAPLAAYLGGGDEEDSARDP 127 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 L + +AD+ D W ++ + + W E + Sbjct: 128 EQVRLWQLCQKVADLFDQYLVYRPDWIARWEEGEGLSQELAGVSGQDWQP--ELWRELVA 185 Query: 201 ELNASSPVGYQIA-----LMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANHP 253 A SP GY A + A + + G + P + + + P Sbjct: 186 RTLALSPSGYHRANLYEEFIHELARTADLPGKLPQRVFVFGISALPPRYVEALLALGSRP 245 Query: 254 --NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + + + + + T T Q LL + D Sbjct: 246 EVEVHLFVTNPCRYYWGDLLDRKTLARLETKLKPGTDIETLQGPANPLLASMGKLGRDYL 305 Query: 312 RLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + + + + + + I Sbjct: 306 HQLMELEVPQIEAFVDIDEVDAKGNVSLLRAIQKDVLELAERGAGQFDLDSSHHKSPIDP 365 Query: 355 CFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL---- 406 + + E + L +++ K ++ D N + Sbjct: 366 ADGSLQIHACHGPMRELEVLHDRLLALFEQDPTLTPKDVVVMMPDVNSYGPYIQAVFGKE 425 Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPE 461 R I +S + +LL + +++ P L +F + Sbjct: 426 KSGARGQIPFAVSDRAASQESPLLQSFLALLRLPNARFGAGELLAILEVPAVLRRFELDD 485 Query: 462 KYLSRAKNALELVALRGN-----------KNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 ++ + ++ +R L L + + Sbjct: 486 DEFNQLRVWVQETGIRWGLDDGYPVRFDLPPMSGNSWLFGLRRMLLGFAMGDGEPVAGIL 545 Query: 511 RLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 ++ + + + L + + +++W + L+ L + Sbjct: 546 PYADIEGQQGLALGKLAWF----VDSLAEFLPRLQQAQPLAEWHACLLALLERFYLADED 601 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 + L + L +++ E A D + ++ GE+ + + + Sbjct: 602 EERQL--QLIRSQLVEWQTRLGEARFEQPITADLLQDYLGSVL-GESRSSQRFLAGQVNF 658 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + R + F + L G+N+GV+P+ A F +M + E Sbjct: 659 CTLMPMRSIPFKQVCLLGMNDGVYPRTLAPMGF--DLMAVASRRGDRSRRDDDRYLFLEA 716 Query: 691 ANGTRH-LIYTRSL--RENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLD 740 + L + ++N + S L L VL G + D+ + Sbjct: 717 LLSAQQGLYISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLVGDEDLDDETSGKRLLNH 776 Query: 741 WT-------------------RKLDYTTKQPHYKRP-----------KPFPPLEAQPRTY 770 R Y P P PP + + Sbjct: 777 LMVAHPLTPYSRNYFYPEAGSRLFTYAADWLPALNPVRGAANFQSGELPLPPEWGKEQGL 836 Query: 771 SFSEIKQLINDPYAVYARRILKLD-FIPHFK-KDPDRTDRGTLFHNIITELIKKRINKNT 828 +E+ + P + R LK+ + +D + + L H + +L+ Sbjct: 837 ELAELLRFYRQPTKYFLNRRLKVWFELNEANIEDSEPFELDGLQHYQLKDLLLDAHLAEG 896 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 + + + + K++ +S + V I Sbjct: 897 DSTERRERLQLTGLLPQGWFGSLLLDDLDAEMGKLADRLRPWIAADESEKQ--AVEIDIS 954 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVDIT 916 + L G+ D + G + + Sbjct: 955 LTQG----QLQGWID----TQKGRLLVV 974 >gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 1190 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 82/808 (10%), Positives = 193/808 (23%), Gaps = 93/808 (11%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 A L+ W + + + + G AG G Sbjct: 391 QRALGLLREPGAAWV-MYKLDGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSED 449 Query: 242 TARL-MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 + V ++ G D ++ + + + Sbjct: 450 EPPRTIFAVGDYKQSIYGFQGADPDSFREWRQKFKKRVQDAHLLWREPELTVSFRSTAPV 509 Query: 301 DFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L + + G V + ++ + + + + Sbjct: 510 LKLVDAVFADPEAAKGVVEEPGQIMEHITARPGEGGRVELWPLVEAEKEEDIISPWEPAQ 569 Query: 359 VALIEADNEREEAISIAIALRMSLDE----------NKKKSALITADRNLARRVKLELTR 408 ++ A ++A + L++ L+ + L Sbjct: 570 GNATRQSPRQKLADAVAGYIFRQLNQKPLSGQKPLTPGDVLVLVPRRSPFVGMLVRALKG 629 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 I + L+ L + SL A+ D + +A ++ PL A Sbjct: 630 HNIPVVTLVRTGLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDNSLMALAAG 689 Query: 469 NALELVAL---RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 R L+ + Q + + S A L Sbjct: 690 REKGEPLWSALRERHAEQSDWKQAWNFLNGLFRQVDYLTPYEFLSAALGPGGARARFLAR 749 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + P+ + S + W +T+ Sbjct: 750 LGPEAAEPIDELLSAAIRYQDQHPPS------------------LQGFLHWMRHSEETVK 791 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 ++ + A+ + + ++ + L + Sbjct: 792 REAEAGGDSVRIMTAHGSKGLQARLVILPDT-------------VGLPRFEERLFWAHDK 838 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 ++ ++ A + L+R ++ + + E+ + + + Sbjct: 839 KQNIDVPLYVPRNALSVGLTRSLKDVMRSRVVEE---YNRLLYVALTRAADRLVVCGWKP 895 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK------- 758 S W +R + + + + L+ T ++ + Sbjct: 896 GRNVPAES-WYERCRIGFEKAGATEIDFQEGGWSGSMLLLEETPQEEVNPKKSVPTSVEK 954 Query: 759 -------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD------- 804 P A + E + + P A L +P + D Sbjct: 955 SEDTALLPQWMGTAPLWKPTLPEAESPLARPLAPSKPDDAMLGPLPPVRSPLDIAAVTPA 1014 Query: 805 -----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 RG L H+++ L + + + + E +I Sbjct: 1015 KAREAAFRRGNLVHSLLQFLPACSAEQQPAMAHQWLARPASGLSSHEAAELAQQVIAVLR 1074 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 +++ F + ++ V + G + G DR+ +L + V + D+K Sbjct: 1075 LPELADLF---DPSARAEQRLAGV---------AGGQVIVGQVDRLRVLPN-KVLVCDFK 1121 Query: 920 TGD--NPKKETAQKLIDPQLSLEAAALK 945 TG E L Q++ A L+ Sbjct: 1122 TGRHAPRGVEDTPVLYLRQMAAYRALLQ 1149 >gi|227546869|ref|ZP_03976918.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212831|gb|EEI80712.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 1101 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 105/856 (12%), Positives = 225/856 (26%), Gaps = 162/856 (18%) Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 I+ + A L VL L + + T + Sbjct: 140 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 199 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 H L F + +++ + ++ ++ MV + S + R D N + Sbjct: 200 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 259 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405 +I + ++ + E A +++ + + + ++ E Sbjct: 260 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 319 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 T GI I+I+A + + + LL++ +I +++ + Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 374 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L I +N + + + + D A L Sbjct: 375 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 408 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 I I + S ++ Q + + + Sbjct: 409 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 467 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 E + + + +++ + +S + +L L + +I Sbjct: 468 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 519 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688 + G +E P + L + DL+ T E+ GQ F Sbjct: 520 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 579 Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +A+ T+ L T N S ++ + GT + + + Sbjct: 580 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 637 Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793 + R P + S S I+ +PY + + LK+ Sbjct: 638 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 697 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELI----------KKRINKNTPEINHLMKQIIDS-- 841 + F D GT +H ++ + + M+++I Sbjct: 698 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTATDMQELIADYS 755 Query: 842 ----------------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS------IE 879 E + +I R L + ++ + ++ + Sbjct: 756 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 815 Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908 V + G + + G DRID Sbjct: 816 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 875 Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 +S + + DYK+ P + + QL A+A + S V Sbjct: 876 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 930 Query: 958 ANLFYIRLKQKFKIDC 973 A +F++ +K I Sbjct: 931 AGMFFLPIKPSATIRE 946 >gi|85059953|ref|YP_455655.1| exonuclease V subunit gamma [Sodalis glossinidius str. 'morsitans'] gi|84780473|dbj|BAE75250.1| exodeoxyribonuclease V gamma subunit [Sodalis glossinidius str. 'morsitans'] Length = 1132 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 107/969 (11%), Positives = 232/969 (23%), Gaps = 107/969 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ G + DP P I V + Q ++ E G + I Sbjct: 11 DLLKTLAAALIAGRPLR----DPFQPE-----VILVQSNGMAQWMQMELAAQFGIVANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + + FT L + + +A +L Sbjct: 61 -DFPLPASFIWQMFTRVLPDIPDESAFAKPAMTWRLMA-----LLPRLCQHPDFAVIGDY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 L A +AD+ D W L + + + A + + Sbjct: 115 LRDDEDKRKGFQFAARIADLFDQYLVYRPDW--LESWQRGELIDSMGEAQRWQAPLWRAL 172 Query: 196 TERLVELN--ASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVAN 251 ++ E + + I G + P + + + Sbjct: 173 VAETERAGEPLWHRANLYQRFIQTLTESQTRPPGLPDRVFICGISALPPTYLQALQALGR 232 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------------- 298 H + ++ + I + Q + Sbjct: 233 HIDIHLLFTNPCRYYWGDIRDRAFLARLLHRRRRHYQQQTEQALFRRPEQADALFNELGE 292 Query: 299 ------LLDFLDIKREDVKRLGNVSN--------EMYGRSMVISKSFLPPDTSDMRNTDI 344 LL + D L + ++S + Sbjct: 293 QQTGNPLLASWGKQGRDNLYLLAQMDGIAEVDAFVEPAEDNLLSLLQRDILMLEDHAVIG 352 Query: 345 LENKIP-------NIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALIT 393 + +IP ++ ++L + + E + +L + E + ++ Sbjct: 353 MGPEIPEQGGGKRPLRPDDRSLSLHVCHSPQREVEVLHDSLLAMIAEDPTLRPRDIIVMV 412 Query: 394 ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 AD + + + IS SLL + Sbjct: 413 ADIDRYTPAIQAVFGNTGGDRYLPFAISDRRARHLHPVLPAFLSLLELPRSRFAAEQVLA 472 Query: 449 LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQ 499 L++ P +F E+ L + + +R + + L + Sbjct: 473 LLEVPALAARFAINEQGLQLLRQWVAESGIRWGLDDDTLRALMLPATGQHTWQFGLTRML 532 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTV 558 + + L+ ++ + L+ + ++ S+ W Sbjct: 533 LGYAMDSDSGDWQGILPYDESSGLIAGLVGQLAELLMRLRQWRDRLTQPRSLYAWLSCAR 592 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 ++ + L L ++ G D + +D E V Sbjct: 593 EMSEDFFTPDAEAEAAL--ALLENQWQQLLECGLQVGYDQPVPVTLLQDELAARLDQERV 650 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + T+ + R + F + L G+N+GV+P+ F +M Sbjct: 651 SQRFLAG-TINFCTLMPMRSIPFRVVCLLGMNDGVYPRTLPPAGF--DLMAQQPRRGDRS 707 Query: 679 KYIGQAAHDFEMANGT-RHLIYTRSLRENNIPT---------IASRWLQRLLVLGGTDFF 728 + E + L + R T S ++ + L G D Sbjct: 708 RRDDDRYLFLEALMSAQQRLYISFIGRAIQDNTLRYPSVLVSELSDYIDQSFYLPGDDCA 767 Query: 729 DNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND---PYAV 785 D + + + P P A + S + D P Sbjct: 768 DAESSADRVRVHLWQWHSRMPFAPENFLPDSENQSFADEWLPAASAGGEPQPDFVAPLTA 827 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 L LD + F + P R + + I+ L + ++ Sbjct: 828 PPCEALALDELLRFYRHPVRAWFVQRLAVSFHQTSLELAADEPFVIDGLTRYQLNDRLVN 887 Query: 846 ENLPPHI--DIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNI----------PAKMAI 891 + + + + +F E Q ++ + Sbjct: 888 ALIDGESTDRLFSQVRAAGLLPYGAFGELYWAKQCQDMAALAEQVRTWRLPETHSLEVDL 947 Query: 892 ESIGIHLTG 900 + L+G Sbjct: 948 TLEDVTLSG 956 >gi|296104482|ref|YP_003614628.1| exonuclease V subunit gamma [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058941|gb|ADF63679.1| exonuclease V subunit gamma [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1124 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 125/1075 (11%), Positives = 281/1075 (26%), Gaps = 148/1075 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP P + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERERLDDPFEPE-----MVLVQSTGMAQWLQMSLSRKFGIAANI--DFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + E F L P S + +L+ + + L + L Sbjct: 64 LPASFIWEMFVRVLPDI----PEQSAFNKQSMSWKLMALLPDMLTHDEFAML-RHYLHDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 LA AD+ D E L + + A + K E Sbjct: 119 TDKRKLFQLASRTADLYDQYLVYR--PEWLTRWEAGELVEGLPEAQVWQAPLWKALVEHT 176 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHP 253 +L P ++ L + L T P + I G + P + + H Sbjct: 177 EKLGQ--PKWHRANLYQRFISILENSTDRPARLPSRVFICGISALPPVYLDALKALGKHT 234 Query: 254 NGAIVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQY 294 + I+ H W T+ + +++ Q Sbjct: 235 DIHILFTNPCRHYWGDIQDDRWLSRLVTRQRRRLFEERTVPLFKDSASAAQLFDEQGIQN 294 Query: 295 SLAKLLDFLD-IKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTS 337 LL + R+ + L + + ++ I Sbjct: 295 LPNPLLASWGKLGRDYIHMLSDITSSGEGDVDAFVEITPDSLLHNIQSDILDLENRAVMG 354 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALIT 393 + + + + + + E + L L D + ++ Sbjct: 355 VTAEEFERSDTKRRLDPDDRSITVHVCHSAQREVEVLHDQLLAMLQDDPDLTPRDIVVMV 414 Query: 394 ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 AD + + + IS + +LL+ + Sbjct: 415 ADIDSYSPFIQAVFGSATGERYLPYAISDRRARQSHPALQAFVTLLSLPDSRFISEDVLA 474 Query: 449 LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQ 499 L+ P+ +F E+ L + + +R + ++ + + + Sbjct: 475 LLDVPVLAARFNINEEGLRYLRQWVNESGVRWGIDDDNVQEFELPPTGQHTWQFGLTRML 534 Query: 500 KNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + + L + + + L+ + + + +W + Sbjct: 535 LGYAMESSQGEWNEVLPYDESSGLIAELVGHLASLLMQLNRWRRALMQPRPLEEWLPVCR 594 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 L + L + + E ++ + + + D +T +D E + Sbjct: 595 ELLNDFFLPDSDTEAAMALIE--TQWQAIVDEGVNSHYNEAIPLSLLRDELTLRLDQERI 652 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + I + R + F + L G+N+GV+P+ F +M Sbjct: 653 SQRFLAGP-INICTLMPMRSIPFKVVCLLGMNDGVYPRALPPLGF--DLMSPAPKRGDRS 709 Query: 679 KYIGQAAHDFEMANGTR-HLIYTRSLRE--NNIPTIASRWLQRL------LVLGGTDFFD 729 + E + L + R +N S +Q L D Sbjct: 710 RRDDDRYLFLEALISAQNKLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEER 769 Query: 730 NLKKRGQCYLD------------------------WTRKLDYTTKQPHYKRPKPFPPLEA 765 N + Q L K+ Sbjct: 770 NCDESDQRVKAHITCCHSRMPFDPMNYVASELQSYAQEWLPAAKKEGKAHSDFIQELDAR 829 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 T +F ++++ P + ++ L+++F + PD + Sbjct: 830 PIETLTFEQLQRFWAHPVRAFFQQRLQINFRSEESEIPDAEPFTL---EGLERYQLNLQL 886 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 N ++ + LP +I+W ++ + E + + Sbjct: 887 LNALVEQEDADKLFRRYRAAGQLPYGAFGEIVWEAQCIEM-KALAERVIECRQPGT---- 941 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSG--FVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 ++ + GI LTG+ + G P + + QL LE Sbjct: 942 --SLEIDLNCNGIQLTGWL--TQVQPDGLLRWR---------PSMLSVSQG--LQLWLEH 986 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 AG + + ++R + +++ + ++ + E + + + Sbjct: 987 LVYSAGG------NQGESRMFVRKEGEWRFPPMEPEQALHYLSLYIEGYRQGMNK 1035 >gi|172040717|ref|YP_001800431.1| RecB family exonuclease [Corynebacterium urealyticum DSM 7109] gi|171852021|emb|CAQ04997.1| putative RecB family exonuclease [Corynebacterium urealyticum DSM 7109] Length = 275 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 92/277 (33%), Gaps = 30/277 (10%) Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P P + S S P R I KL +GTL H ++ E Sbjct: 8 PQPKVSLDRLALSPSRAGDYQQCPLLYRFRSIDKLPEPKTI-----AQVKGTLVHAVLEE 62 Query: 819 LIKKRINKNT-PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEE 872 L + T P ++K +K E +P + + + + E Sbjct: 63 LHALPREQRTYPVAVKMLKPAWAKMVDKDADLNELVPDEQLYDFLVEARLLVKGYFQMEN 122 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 + V + + G+ + GF DR+D+ +G V + DYKTG P A + Sbjct: 123 --PQGFDAHEVEEFVEATLP-NGVPVRGFIDRVDVAANGQVRVVDYKTGKKPPPRFAAQA 179 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLK 992 + Q+ A + ++ L Y+++ + + + + D + Sbjct: 180 L-FQMKFYALVYWR--LYDLIPAQL-RLMYLKVADDLVLQPTPAELQYFERD-----LRE 230 Query: 993 NLIEIVTLLQNGE-QPFISHLRLSEKSNIQSEYDHLA 1028 I+ +Q+G+ QP S K + L Sbjct: 231 LWDSILADIQSGDFQPKTS------KLCDWCAFQELC 261 >gi|150391867|ref|YP_001321916.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens QYMF] gi|251764575|sp|A6TVN9|ADDB_ALKMQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|149951729|gb|ABR50257.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens QYMF] Length = 1149 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 33/228 (14%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK---N 827 S S +++ N P++ + L+ + D G LFH+ + + K+ +N+ Sbjct: 776 SVSRLERFANCPFSHFVTYGLRPKERK--EYQLSNPDIGRLFHDSMEQFTKEMVNEEIQW 833 Query: 828 TPEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKI---SHSFLEHEEKIQS 876 ++++ ++ H +I + L K + Sbjct: 834 KDLTKEKNDELVEKVIDEMVPDFEHGIMLSTHRYQYLVTRLKRISKRAMWTLTDHVK-KG 892 Query: 877 SIEKIFVNIPAKMAIESIGIH----------LTGFADRIDLL---KSGFVD-ITDYKTGD 922 + I + + I L G DR+DLL + G I DYK+G Sbjct: 893 EFVPMGHEIIFGLEGDVPPIIIELANGEKIYLEGRIDRVDLLNDEEDGNYVKIIDYKSGS 952 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQK 968 + QL + A L + +FY ++ Sbjct: 953 KEFSLSDVYYGLQIQLMVYLDAILSSEEKKHQVEIHPGGIFYFKIDDP 1000 >gi|170023290|ref|YP_001719795.1| exonuclease V subunit gamma [Yersinia pseudotuberculosis YPIII] gi|169749824|gb|ACA67342.1| exodeoxyribonuclease V, gamma subunit [Yersinia pseudotuberculosis YPIII] Length = 1123 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 82/766 (10%), Positives = 184/766 (24%), Gaps = 87/766 (11%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFSIAANI- 60 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 + L +L S +L L+ L + + Sbjct: 61 --VFPLPATFIWDMFTRVLPDIPKESAFSKEAMTWKLMWLLP----DLLENPLFSPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D WE ++ W L + Sbjct: 115 LSDDGDRRKIHQLAARVADLFDQYLVYRPEWLESWERGQLIEGLDDAQQWQA---LLWVE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T +L + + + + + I G + P + + + Sbjct: 172 LTRYTRQLEQPEW-HRANLYQRFIHQLLKSDVCPQGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------T 290 H + ++ + I + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELSLFRYPQQAEQLFNTD 290 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI- 349 Q LL D L + +E+ + + LE+ Sbjct: 291 GEQNLSNPLLASWGRLGRDHMYLLSQIDEIQEVHAFVDIEPDNLLHGIQHDMLELEDHAV 350 Query: 350 --------------PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSAL 391 + ++ + + E + L L + + + Sbjct: 351 IGTTPETLARSDQKRRLDLDDRSLSFHVCHSPQREVEVLQDHLLGLLAADPELTPRDIIV 410 Query: 392 ITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + D + + + IS +LL+ + Sbjct: 411 MVVDIDSYTPYIQAAFGNAPSERYLPFAISDRKASQAHPALHAFITLLDLPQSRFTAEQV 470 Query: 447 ATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIA 497 L++ P F E L R + + +R + ++ +L + Sbjct: 471 LALLEVPALATKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELSLPATGQHTWRFGLTR 530 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKL 556 + + L + + L+ + +S+W + Sbjct: 531 MLLGYAMDSTAGDWQGILPYDESSGLAAELAGQLADMLMHLSQWRQQLGQPRELSEWLPI 590 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L ++ L E + + I D + +D E Sbjct: 591 CRQLLDTFFDQDNDTEAALVLIE--QQWQKVIGYGIAAQYPDVVPLNLLRDELAARLDNE 648 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + F + L G+N+GV+P+ F +M + Sbjct: 649 RISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPQGF--DLMAKKVRRGD 705 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRL 719 + E + L + R +N S + L Sbjct: 706 RSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSEL 751 >gi|315930458|gb|EFV09518.1| hypothetical protein CSS_0434 [Campylobacter jejuni subsp. jejuni 305] Length = 571 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 98/308 (31%), Gaps = 16/308 (5%) Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E + I + E I + I ++ + ++G LE Sbjct: 277 EKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSL--SDVGGGKVTVMGLLE 334 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GT 694 SR L FD +IL NE PK + FL+ ++ L + ++ +E Sbjct: 335 SRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNA 394 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + E SR+L L DFF + YL+ + K Sbjct: 395 LEVSICFVENEEKSK---SRFLDELDF----DFFYETHIHQKAYLNALKLDYEGIKPNLT 447 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P SFS L N Y R IL L ++ ++G H Sbjct: 448 PIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHK 507 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ K N N ++ + +KE +I + +F F ++E++ Sbjct: 508 MLEIYYKNYANNNFD------IKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEH 561 Query: 875 QSSIEKIF 882 S + Sbjct: 562 FSKGFYVA 569 >gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 1138 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 118/1081 (10%), Positives = 250/1081 (23%), Gaps = 201/1081 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----------SLGDVVEEKFTADLL 94 AS+ T++A EL + +P ++ + E + + Sbjct: 64 ASILGLTFTRKAAGELGDRLRARIRLLAEAMPHLRERLDADPVSLTYNSFAERIVSEHGM 123 Query: 95 LSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 +S L + +++ W N L + + L S + + Sbjct: 124 RIGIDPDFSMLSEAGALDMMLQIVEAWPNDLDEELTPLGAVSQVLHLAGEIAEHGYTVSS 183 Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 A E + + FL + + +R +L + Sbjct: 184 AREALEEFGRELEQVGDTNEDARRLLRANRRRIAFLGPI-EAYQQRKRDLGFLDFSDQLV 242 Query: 213 ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 R E ++ +++ + L+S + V D + Sbjct: 243 LATRIVREAPVVREALREEFRAVLLDEFQDTSVIQMDLLSMLFG---DHAVTAVGDPNQA 299 Query: 268 TAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 W + S + L R + V+ + + Sbjct: 300 IYGWRGASASSLESFLERFCSAPATPEQTLTLSTAWRNDRAILDAANRVAAPLREVAAY- 358 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA----IALRMSLD 383 + + + E+A+ +A +R Sbjct: 359 --------QEGKCALNAQSPVLVARGGAGGGRVEVAYAPAYEDALGVAVDFVQRMRSRAG 410 Query: 384 ENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 E + A++ R V L GI +I L + + L Sbjct: 411 EGGKRRTVAVLCRRRKDFAYVDAALRDAGIPTEIVGLGGLLDQGAVQDVRAALELAHD-- 468 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 + P L A R + ++++LD + Sbjct: 469 -------VGASPWLARLLAGIDLGAADLMALGDWARVLARAEGASAHQAVLLDAVDAPPQ 521 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + +SEE LL + + + ++ + + T+ + Sbjct: 522 PGWSAEGRPAISEEAVRRVRLLGERLRAVREGVG------------RTVVEQVERTIRIM 569 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L + +S + +T + + ++ + DG Sbjct: 570 GTLDDVIADPLSMGGRAALDEFISVAAAYERDTPGASLGSFLAYLRMADEREDGLEAPLG 629 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLN------------------------------- 650 + I+ S+ L +D +++ GL+ Sbjct: 630 EPDPRAVQIMTVHASKGLEWDCVVVFGLSDGVFPSHDKRKTVSWLDEPPIDSAWLTDASA 689 Query: 651 -------------------EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 EG + A + ++ L + + A A Sbjct: 690 LPHPLRGDRADLPPFALDVEGEAKPSAAYSKWMKGHYGRALGVHAEREERRLAYVAMTRA 749 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLG---GTDFFDNLKKRGQCYLDWTR----- 743 + L+ + R + SR+L D D+ R W R Sbjct: 750 RSAQLLVGSWIYRMGSATRQPSRYLMEARDELFGQEPDLVDDSLTRVDDRGVWARGDWRG 809 Query: 744 -------------------------KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + P P L A ++I+ L Sbjct: 810 LGVESVSGAGACLIAPQPDDEEIAQSCAAAASATFPEEPGPSRRLVAGAAAAVEAQIRAL 869 Query: 779 INDPYAVYARRILKLDF--------------------IPHFKKDPDRTDRGTLFHNIITE 818 D A L D + + + T L H+ E Sbjct: 870 AGDRDVYEALAELGDDPAVRDTVALIEEYHLGLETPVVDLWAERVPATSVSALLHDG-EE 928 Query: 819 LIKKRINKNTPEINHL------MKQIIDSHFEKENLPPHIDIIWRH-------------- 858 + + L ++ + P + Sbjct: 929 FARDMRRPMPSRPSSLSALGTVFHAWVERELHLASADPASEAFELATGEDAALAGGDGAD 988 Query: 859 ----------LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 ++ +F + + + + + G+ + G D + Sbjct: 989 EALLTEGERGRLDRLRANFRAFVATRLAGYRAVAIEEAFSVQV--GGVSVQGRIDAVFER 1046 Query: 909 KSG---FVDITDYKTGDN---PKKETAQKLIDPQLSLE--AAALKAGSFSQIDCRKVANL 960 + D+K+G K QL L A A + G + VA L Sbjct: 1047 VGEQGPRFLVVDWKSGAPITAATKPDKIAYFVTQLRLYRRAWAARTGVGPEEVGAMVAFL 1106 Query: 961 F 961 Sbjct: 1107 A 1107 >gi|261342241|ref|ZP_05970099.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cancerogenus ATCC 35316] gi|288315577|gb|EFC54515.1| exodeoxyribonuclease V, gamma subunit [Enterobacter cancerogenus ATCC 35316] Length = 1124 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 108/973 (11%), Positives = 254/973 (26%), Gaps = 119/973 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + + DP P + V + Q L+ + G + I Sbjct: 11 DVLEALMEFIVERDRLDDPFEPE-----MVLVQSTGMAQWLQMSLSQKFGIAANI--DFP 63 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + E F L P S + +L+ + + L + L+ Sbjct: 64 LPASFIWEMFVRVLPDI----PEQSAFNKQSMSWKLMTLLPDMLTHDEFTML-RHYLNDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA AD+ D +W + + L A TE+ Sbjct: 119 TDKRKLFQLASRTADLFDQYLVYRPEWLTAWEAGERVEGLPDAQIWQAPLWKALVEHTEK 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + H + Sbjct: 179 LGQPKW-HRANLYQRFISILERATERPARLPSRVFICGISALPPVYLNALRALGQHIDIH 237 Query: 257 IVLPGLDCHIP----TAIW---------------NTITEKSTNITSSNTTYSTHPQYSLA 297 I+ H A W ++ + T++ Q Sbjct: 238 ILFTNPCRHYWGDIQDARWLARLVTRQRRRLFEERSVPLFKDSATAAQLFDEDGMQNLPN 297 Query: 298 KLLDFLD-IKREDVKRLGN----------------VSNEMYGRSMVISKSFLPPDTSDMR 340 LL + R+ + L + + ++ + I Sbjct: 298 PLLASWGKLGRDYIHMLSDITSSGEGDVDAFAEIAPDSLLHNIQIDILDLENRAVMGISS 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADR 396 + + + + + + + E + L L ++ + ++ AD Sbjct: 358 EEFVRSDGKRLLDPDDRSITVHVCHSPQREVEILHDRLLAMLQDDPTLTPRDIVVMVADI 417 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + + + IS + SLL+ + L+ Sbjct: 418 DSYSPFIQAVFGSATGERYLPYAISDRRARQSHPALQAFISLLSLPDSRFISEDVLALLD 477 Query: 452 HPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDI--MDLKSLVLDRIATQKNNTHVPH 507 P+ F E+ L + + +R + ++ +L + + Sbjct: 478 VPVLAARFDVNEEGLRYLRQWVNESGVRWGLDDDNVQEFELPPTGQHTWRFGLTRMLLGY 537 Query: 508 WQSRLSEEDKELA------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 E E+ L+ + + + L+ + + + +W + L Sbjct: 538 AMESHHGEWNEVLPYDESSGLIAELVGHLASLLMQLNRWRRELMQSRPLVEWLPVCREML 597 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 L + + E K ++ + + + D +T+ +D E + + Sbjct: 598 NAFFLPDDETEAAMALIE--KQWQAIIEEGVNSHYSEAVPLSLLRDELTQRLDQERISQR 655 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + I + R + F + L G+N+G++P+ F +M + + Sbjct: 656 FLAGP-INICTLMPMRSIPFRVVCLLGMNDGIYPRALPPLGF--DLMSAQPKRGDRSRRD 712 Query: 682 GQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF----------- 727 E L + R +N S +Q L+ G Sbjct: 713 DDRYLFLEALISAQSKLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHYLPGDEARNCD 772 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT------------------ 769 + + +R ++ + Sbjct: 773 ESERRVKDHITFHHSRMPFDPVNYARNEQQSYAQEWLPAAKREGTAHTDFIQELEPRLID 832 Query: 770 -YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 +F ++ + P + ++ L+++F + PD + + N Sbjct: 833 TLTFEQLSRFWAHPVRAFFQQRLQVNFRSEESEIPDAEPFTL---DGLERYQLNLQLLNA 889 Query: 829 PEINHLMKQIIDSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + + LP I + + E + Sbjct: 890 LVDEEDAQLLYRRYRAAGQLPYGAFGEIVWDTQCQEMTALAERVIACRQPG------QSI 943 Query: 888 KMAIESIGIHLTG 900 ++ ++ G+ LTG Sbjct: 944 EIDLDCNGVQLTG 956 >gi|227529821|ref|ZP_03959870.1| ATP-dependent nuclease subunit B [Lactobacillus vaginalis ATCC 49540] gi|227350305|gb|EEJ40596.1| ATP-dependent nuclease subunit B [Lactobacillus vaginalis ATCC 49540] Length = 1258 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 85/810 (10%), Positives = 222/810 (27%), Gaps = 95/810 (11%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + S + P +S I + +++ +L ++ Sbjct: 74 QVLSFSRLAWFLLRDTPAFQT---PRISKIGMTMLTSQVAQEHAQELHLYASEI------ 124 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWED----LHALKNEKYGMW---WLLAADFLK 189 + L + ++ +++ +D L ++ ++ WL ++ Sbjct: 125 -------KRPGFIQKLTEQLEELKSANISADDFSVILEQIQQDQSSGANRVWLTKMHDIE 177 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 I + E+L N + L++ + I + R++ + Sbjct: 178 IIYHAYEEQLR-QNFLGNNELYLQLVKYLQTNKEVHHMHF-FIDRFAQFTASEQRIVDAL 235 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 + +V LD P + +E ++ + L KL + + Sbjct: 236 VENGAATMVSLVLDRGYPDQNHPSPSEVPAENDLFYSSAMVY--RRLWKLAQQEPQQIQL 293 Query: 310 VKR-LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + F + T+ + +P+ V N R Sbjct: 294 QPNVWFATQPRVNDDLQRVDHYFKRYAAGPISTTETSQLTVPSA------VQFYTMANRR 347 Query: 369 EEAISIAIALRMSLD---ENKKKSALITADRNLARRVKL-ELTRFGINIDISAGIPLSTT 424 EE +AI +R + + ++T + + + + + + + Sbjct: 348 EELEKVAIKIRQLVASGKYRYRDFLVLTRHLDGYQNMISPIFAQNQVPVFDDHERKMDQH 407 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL------SRAKNALELVALRG 478 +L++L + + I L+K L L A E L+ Sbjct: 408 PLVILLSTLFSIDQRGYQLGDIMQLLKTWLLVPRLATGELMPIKTFQEAVFTTENWCLKQ 467 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 L + A + +L+++ + +V+ I+ + L + Sbjct: 468 AIRGKQDWINSDLWTVKDAEDQREKATTPQVEQLNQQLAIVHNYVVETIVPFLNQLKEAE 527 Query: 539 TNKNSTCGNLSISD---WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + T+ Q ++ + + + +E Sbjct: 528 SGRELATMLFNFLQQNGVTERLYQWQQY--QSTRDLDLARQPQQVWEKFCQILQEYVEIL 585 Query: 596 SCIKAN-------AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++ +II + + T + N + + G Sbjct: 586 GEDQLDKENIDDYLEKFNEIIQAGFSAAQYSQIPATLDQVVVSETGIVQSQNKKVVFMIG 645 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696 + V P+ + L+ + L + + A H M + + Sbjct: 646 STDDVMPEVRENDGLLTDQDKQILAPYLDDDFQYLPADMITELNNEPFVHYLGMLSAKQQ 705 Query: 697 LIYTRSLRE-NNIPTIASRWLQRLLVLG--------------GTDFFDNLKKRGQCYLDW 741 LI+T ++ S +++ L G + + L Sbjct: 706 LIFTAPQATNDDKELTISPYMRDLAAYLQQPIINSPLVTSKVGRESAQQFISSPEASLSQ 765 Query: 742 T----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 R++ K P + + ++ QL +D + L+ Sbjct: 766 LVRVGRQVRDDQKAVAAPVQMPSAWKKIKQDLILLAKQWQLSSDATDNALGKRLQ----- 820 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKN 827 + + ++G +HN++ ++ Sbjct: 821 ---QRLEMVNQGFNYHNVVDDIGATLAQAL 847 Score = 77.7 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 69/245 (28%), Gaps = 48/245 (19%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-----KKRI 824 S S+++ + Y + + L+L + D GT FH + I ++ Sbjct: 863 ASISQLQNFYINQYEYFLKYGLQLQKRDRLEMSSD--RIGTFFHKAMETFINNTRQQQVE 920 Query: 825 NKNTPEINHLMKQIIDSHFE----------KENLPPHIDIIWRHLFHKISHSFLEH--EE 872 K + +++ ID + + H I + L+ ++ Sbjct: 921 LKELVADSQELRRFIDEALQAAEKNQPELVRLTESSTQAKFQYHQLRTIVTTMLKTMCQQ 980 Query: 873 KIQSSIEKIFVNIPAKMAIE----------------SIGIHLTGFADRIDLLKSGF---- 912 + I I+L G DRID L Sbjct: 981 AQYTEARPFKTEAQFG-RIGSPNQVNLKALDYPLASGDRIYLRGRIDRIDRLPKEQLTDL 1039 Query: 913 ------VDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFS-QIDCRKVANLFYIR 964 + + DYK+ +A I QL L++ ++A Y+ Sbjct: 1040 LQPSDFLTVVDYKSSNHTFDLTSAYYGISLQLLTYLNGLQSNLQELDEPTARLAGALYLH 1099 Query: 965 LKQKF 969 L Sbjct: 1100 LNNPK 1104 >gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331] Length = 1174 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 76/692 (10%), Positives = 172/692 (24%), Gaps = 60/692 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL P + G+ F Sbjct: 67 GTGQVAPEQVLGLTFTNKAAGELAERVRRALVAAGVTDPDVLDPDNPPGEPSISTYHAFA 126 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 127 GRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFPTLVS 178 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195 +L + + + E+L E A L ++ + Sbjct: 179 DLLALDAELAEHLVRPEELLEYDTELLRGLETARLTNAELRKIPETAGARRELLGLTRRY 238 Query: 196 TERLVELNASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + AL R E L++ +++ + A L++ + Sbjct: 239 RTAKRSRDLLDFGDQIALSAELALTRPEVGTLLRDEFRVVLLDEYQDTSVAQRLLLAALF 298 Query: 251 NHPNGAI-----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 G V D W + + + + ++ + L Sbjct: 299 GGGGGDGTAGHAVTAVGDPCQAIYGWRGASVANLDDFPHHFPHADGTPATRYSL------ 352 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 S ++ + + + + + + V Sbjct: 353 -----------SENRRSGGRLLHLANGLAEPLRAMHEGVEALRPAPGAERDGTVRCALLA 401 Query: 366 NEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 EE + +L + + A++ R++ L I +++ L Sbjct: 402 THAEEIDWLGDSLAHLVRTGTAPGEIAVLCRTAGDFPRIQAALVARDIPVEVVGLSGLLH 461 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-RAKNALELVALRGNKNS 482 + L ++ + ++ L+ P + G + L R L G++++ Sbjct: 462 LPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARVLVHRTAPGDEDT 521 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 L V + + S ++ + L T + Sbjct: 522 DPDRRLADAVEGTDPAEVISLADALDTFLESGGAEDDRLPFSAEARVRFARLATELRDLR 581 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + + ++ T V L E + + A Sbjct: 582 RSLADPLMDVLHRVLATTGLEVELSASPHALAARRRETLANFLDVAAGFAAVDGEATLLA 641 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 + +T+ +L +S+ L +D + + GL G +P +++ Sbjct: 642 FLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVGGQFPSTRSRDA 701 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + S+ L+ + Sbjct: 702 WTSQSQVLPHALRGDAPTLPVLDTFDARGLAA 733 Score = 63.0 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 88/824 (10%), Positives = 185/824 (22%), Gaps = 66/824 (8%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 A+ L+ + A + AL+ AE + + + + A Sbjct: 369 LAEPLRAMHEGVEALRPAPGAERDGTVRCALLATHAEEIDWLGDSLAHLVRTGTAPGEIA 428 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L T + P L D + + + + A L+ L Sbjct: 429 VLCRTAGDFPRIQAALVARDIPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLL 488 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 R + R + + D ++L + Sbjct: 489 TGPRWRIGPRDLALLGRRARV----LVHRTAPGDEDTDPDRRLADAVEGTDPAEVISLAD 544 Query: 364 ADNEREEAISIAI-ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLS 422 A + E+ L S + + + L T R+L R + L + + G+ + Sbjct: 545 ALDTFLESGGAEDDRLPFSAEARVRFARLATELRDLRRSLADPLMDVLHRVLATTGLEVE 604 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + L + +A A +L A + + Sbjct: 605 LSASPHALAARRRETLANFLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGE 664 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP--------- 533 + L + + S ++ + + Sbjct: 665 NTVKVLTAHKSKGLEWDVVAVPGLVGGQFPSTRSRDAWTSQSQVLPHALRGDAPTLPVLD 724 Query: 534 ------LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL------------ 575 L +K + + H P+ Sbjct: 725 TFDARGLAAFKAEMKGHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSVFLDA 784 Query: 576 --WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILG 632 G +++ A E D L +D + + T+ Sbjct: 785 LYEHCAAGHGEIEVWADEPGEDEENPALRDEGADQPWPLPLDDTAMARRRAARDTVLAHL 844 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 + DT+ + + + Sbjct: 845 EALAAAPVPDTVPEEYGRTAPGGRPRPAHEPPYDDEPRPFEDDEPPHDEPPYDDADAPYD 904 Query: 693 GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 R P + + + + W R LD + Sbjct: 905 DPYPDGEEDPGRAGPPPPRDAPAAPHVPAARTPADAALTPEESRTLASWDRDLDALAGEL 964 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 R + T S +++ L +DP AR + + P RGT F Sbjct: 965 RRARAAVRDVVVPA--TLSATQLLHLADDPEGF-ARELARPMPRPPQ----PAARRGTRF 1017 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + ++ E + ++ E Sbjct: 1018 HAWVESRFEELPLPMLG--------------PDELPGGDENDAEIADERDLAELKEAFER 1063 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 + V IP ++ + + G D + +I D+KT + + Sbjct: 1064 TSYARRTPHGVEIPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTSRHRTADP---- 1116 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 QL++ A ++ A Y+R + + + Sbjct: 1117 --LQLAVYRLAWAELHGLPLEAV-AATFLYVRTGETSRPTGLPG 1157 >gi|322691506|ref|YP_004221076.1| ATP-dependent nuclease subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|320456362|dbj|BAJ66984.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum subsp. longum JCM 1217] Length = 1098 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 105/856 (12%), Positives = 225/856 (26%), Gaps = 162/856 (18%) Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 I+ + A L VL L + + T + Sbjct: 137 IVELHNDGVSAEEVLALAAHQSNARLSVLGSLLQLVEQRLGKRYTFPGAAHETICAWAQR 196 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 H L F + +++ + ++ ++ MV + S + R D N + Sbjct: 197 HGSNRWFYLYGFAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLS 256 Query: 351 NIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSALITADRNLARRVKLE 405 +I + ++ + E A +++ + + + ++ E Sbjct: 257 SIFASSASTSVCAMPDTTAEVRYAAASIKKFIADNPEISYGDVLVTSRDLGSYQAQIASE 316 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 T GI I+I+A + + + LL++ +I +++ + Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLN----- 371 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L I +N + + + + D A L Sbjct: 372 -------------------------LTPTAIDDIENQLNSNNPATVWIDTDIPFAAHL-Q 405 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 I I + S ++ Q + + + Sbjct: 406 KIRSLIQQAADVFRPRPSATVREALGGMVGFLTEYAQTI-EGSAPVWTVIMNAFDDMVQQ 464 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 E + + + +++ + +S + +L L + +I Sbjct: 465 LGNDYFAEYVG-------IFARNLASTLAAQSIDSRPVSASAVDVLPMSSP-LHPYRYVI 516 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------KTAEKYIGQAAHDF- 688 + G +E P + L + DL+ T E+ GQ F Sbjct: 517 VLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLEAWNVLSGTVERRSGQEPLWFN 576 Query: 689 -EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +A+ T+ L T N S ++ + GT + + + Sbjct: 577 GVVASATQQLSMTYPKSLRNAAQACSPYISQ--WETGTSDTSEIIGASKRAVPTVETEYR 634 Query: 748 TTKQPHYKRPKPFPPLEAQPRT--------------YSFSEIKQLINDPYAVYARRILKL 793 + R P + S S I+ +PY + + LK+ Sbjct: 635 PLDRELAYRLFTRPDYVHRVYRTHGADPSISTRVFNASVSAIETYYRNPYEYFLKYGLKV 694 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELI----------KKRINKNTPEINHLMKQIIDS-- 841 + F D GT +H ++ + + M+++I Sbjct: 695 NVANAF--AFDAALEGTFYHAVLEHAVNAWIERHKNERDLNGLPPQPTATDMQELIADYS 752 Query: 842 ----------------HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS------IE 879 E + +I R L + ++ + ++ + Sbjct: 753 RLDRGCNQWTVLNEDPRMEVLRSSNRMRMIHRQLVDTLMDFAVDAAAQREALSSAQTMLT 812 Query: 880 KIFVNIPAKMAIESIG-----------------------IHLTGFADRIDL--------L 908 V + G + + G DRID Sbjct: 813 PTCVEQVFGNVGGTTGAWQSPYSGEQLIGRARDKEIPVALRINGKVDRIDTVIRDTNISR 872 Query: 909 KSGFVDITDYKTGD-----NPKKET------AQKLIDPQLSLEAAALKAGSFSQIDCRKV 957 +S + + DYK+ P + + QL A+A + S V Sbjct: 873 ESAGIVVLDYKSSARTLFGKPSRNDGGRASNVYYGHELQLFTYASAAQHNS-----GMPV 927 Query: 958 ANLFYIRLKQKFKIDC 973 A +F++ +K I Sbjct: 928 AGMFFLPIKPSATIRE 943 >gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM 12444] gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium aromaticivorans DSM 12444] Length = 765 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 101/767 (13%), Positives = 198/767 (25%), Gaps = 119/767 (15%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A L L R P + + T +A +E+R + G +P + + Sbjct: 45 TAALTARLANLLRQRLAWP---SEILCVTFTNKAAREMRERVGNLIGPAVEGMPWLGTFH 101 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + ++R EL L + D L + L + Sbjct: 102 AIAAKM-----------------LRRHAELVGLQSNFTIIDTDDQLRLLKQ--LVVAEGI 142 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 W A+ LA +ID + DL AL+NE Y F + E L Sbjct: 143 DEKRWPARQLAGLIDKWKNRGLNPADLDALENEAYANG--KGQRFYALYQNRLRE-LNAC 199 Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + + + + + R E E L + +++ + + +A + V+ Sbjct: 200 DFGDLLMHMLNIFRREREVLEMWQQRFKYVMVDEYQDTNAVQYLWLRLLAQNRKNICVV- 258 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W + + P + +L + + E Sbjct: 259 -GDDDQSIYSWRGAEVANILRFEKDF-----PGAKVIRLEQNYRSTPHILGAASGLIAEN 312 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R L + V +I + EEA I + Sbjct: 313 SER---------------------LGKTLWTEVDGGDKVRVIGVWDAPEEARRIGDEIER 351 Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 E + A++ + R ++ + G+ I G + L I Sbjct: 352 LEREGAPLDRVAILVRAQFQTRTIEDRFIQIGLGYRIVGGFRFYERAEIRDALAYLRIIA 411 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D +A + P G L R A + + D +L + +A Sbjct: 412 SPQDDLAFERIYNTPKRGLGDKTLEKLHRHARARSIPLSLASVEILDTDELPARARGTLA 471 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + S+ + +L + ++ + Sbjct: 472 ALMRDFGRWRDASKSLVPAELARTILDESGYTAALQAEKTAEAAGRLENLTELARAMEEY 531 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 T +++ ++ ++D E Sbjct: 532 ETLGD------------------------------------------FLEHVSLVMDNEA 549 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 V + I+ ++ L FD + L G EGV+P + + + L + Sbjct: 550 V----ADEEKVTIMTIHAAKGLEFDNVFLPGWEEGVFPSQRSLD---------EGGLASL 596 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENN----IPTIASRWLQRLLVLGGTDFFDNLKK 733 E+ A A RH + +I SR++ L + Sbjct: 597 EEERRLAYVAITRA--RRHCTILHAANRQIYGQWTSSIPSRFIGELPAEHIEEETTLSGG 654 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 +W+ + D + R + Q Sbjct: 655 ASMWRANWSEREDPFAHVAQATPSRGASRGPGWQRAAAQPYNPQPRR 701 >gi|119945194|ref|YP_942874.1| exodeoxyribonuclease V, gamma subunit [Psychromonas ingrahamii 37] gi|119863798|gb|ABM03275.1| exodeoxyribonuclease V, gamma subunit [Psychromonas ingrahamii 37] Length = 1149 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 94/778 (12%), Positives = 205/778 (26%), Gaps = 97/778 (12%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI--- 74 ++++ AL+ G + AS TI V + Q L+ E + TG + I Sbjct: 13 LKDLLVALMQGAKLT---------DPFASETILVQSPGMAQWLQLEIAQSTGISANIDFP 63 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 LP + ++F L + +P + + I+ + Sbjct: 64 LP-----ASFIWQQFKHVLKDVPDKSPF-----NKMSMTWQIMRLLPDCLEDPDFSALLH 113 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWL--------LAAD 186 L + L++ +ADI D +W +E+ W + Sbjct: 114 YLEDDLYLRKRFQLSQKIADIFDQYLVYRPEWIAAWENASEQEISQWHAENTESIPAWLE 173 Query: 187 FLKIASKYWT--------ERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTG 237 + +K W + A G + A I + G + Sbjct: 174 DQRWQAKLWKKLTLTIAESFKAQGKAYHRAGLYKDFLDTLATKKTLEHLPKRIFVFGISA 233 Query: 238 SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN-----------------TITEKSTN 280 + + + +A H + +L + I + + E Sbjct: 234 LPESYLQALLGLAEHCDVHFLLTNPCRYYWADIVDPKLLAKRFAQSRQKLTVSGGEIKNL 293 Query: 281 ITSSNTTYSTHPQYSLA---------KLLDFLDIKREDVKRLGNVSNEMYG-------RS 324 SS ++H Q+S + LL + D + R Sbjct: 294 PDSSWQKDASHLQWSQSNDPDNEVGNPLLASMGKMGRDFLFQLYSLEQQEVDAFVDITRD 353 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD--VALIEADNEREEAISIAIALRMSL 382 ++ + + ++ I + L + E + L Sbjct: 354 SLLHHIQADVLDLQDSSQALSKDPSARISLAPEGNSLTLHLCHSVMREVEILHDNLLAMF 413 Query: 383 ----DENKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSL 433 + K ++ D + + I IS L Sbjct: 414 AADNNLTPKDIIVMVPDIDQYAPYVQAVFASVEQNRYIPFSISDVSAQQENPILISFLQL 473 Query: 434 LNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 LN I L++ P E L + + ++ S DL Sbjct: 474 LNLNQTRYTREDILALLEVPAILQRFNLNQDEFVLLQKWINESGIRWGLDEKSAAQWDLP 533 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL----VDHILQCITPLVTYKTNKNSTC 545 L + + + S E + D + + I + + Sbjct: 534 RLSQNSWLFGIRRMLLGYAISDTLFEGISAYDEIQGLQGDLLGRFIDFIDALIKLQEGLK 593 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + + + W L++ ++ L + +L + + Sbjct: 594 QSYNANQWQAFVYQLLEDFYQEDDDNTMVLSL--IRNEMDNLLDHTGQADFTQPISLFVL 651 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 I+ + + + + + + + R + F + L G+N+G +P+N F Sbjct: 652 IEHLEQHLSDQGNSQRFLAG-QVNFCTLMPMRSIPFKVVCLLGMNDGQYPRNIVPMGFDL 710 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV 721 ++ + + + + R+ +N + S + LL Sbjct: 711 MAGHRKRGDRSRREEDRYL-FLEALLSAQEKFYISYIGRDINDNSEKMPSVLVSELLN 767 >gi|312963040|ref|ZP_07777526.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens WH6] gi|311282809|gb|EFQ61404.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens WH6] Length = 1149 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 103/975 (10%), Positives = 247/975 (25%), Gaps = 96/975 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV- 84 L +V R PL P L + V + Q L+ E I + DV Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPQDDDMGGCGIAAAIDVQ 79 Query: 85 ---VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 ++L + PP S + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPELINQPHFEPLQRF-LTSDTD 138 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTER 198 LA+ LAD+ D + W + A + + ++ W Sbjct: 139 LRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRSGRGESKPLDPANCWQAELWRAL 198 Query: 199 LVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 L+++ + + + E +G +I+ G + ++ +A Sbjct: 199 LLDVGEEGMAESRAGVHQRFIERINTLEDAPRGLPSRVIVFGISSLPAQALEALAGLARF 258 Query: 253 PNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H + I + T Q++ L + Sbjct: 259 SQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKAGMPVTLDPQTLHQHAHPLLAAWGK 318 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILENKI 349 R+ + L + + R+ S+ + E Sbjct: 319 QGRDYISLLDSYDDPNSYRAAFRDGRIDLFSESEPTSLLNQLQDDILELRPLNETRERWP 378 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLE 405 + + V A + + E + L + ++ D + Sbjct: 379 AVELEHDTSVRFHIAHSAQREVEILHDQLLQRFSADPALRPRDIIVMVPDVDSYAPHIRA 438 Query: 406 L-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + I ++ + LL I L+ P + Sbjct: 439 VFGQLDRSDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRER 498 Query: 459 FP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQ 509 F E+ L +E +R N+ L ++ + V Sbjct: 499 FAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPGDLEQNSWRFGLRRMLLGYAVGTGV 558 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + E + L ++ + L+ + + + + L + Sbjct: 559 ACNGIEPYDEIGGLDAALIGPLVALLDALHDAHQALSQPAAPQEWGERLQRLMQLFFLPS 618 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + + + G + + +D + + + + Sbjct: 619 SEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGA-VN 677 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + R + F + L G+N+G +P+ F ++ + Sbjct: 678 FCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LLEA 736 Query: 690 MANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG-----------------TDFFDN 730 + + L + R +N AS + +L Sbjct: 737 LLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLASGWHNAQEQPLLEAMTQEHPLQP 796 Query: 731 LKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 R G + R+ + + P Q S +++ + +P + Sbjct: 797 FSARYFHEGDALFSYAREWQLLHEAVDAVPTEDELPPHQQEEPLSLGQLQDFLRNPVKHF 856 Query: 787 ARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 + LK + D R +L ++++ + + + + ++ Sbjct: 857 FSQRLKVFFEAADVPLADEEPFVLDALQRYSLSDSLLSAALSQPADLDQALNAQALRLQG 916 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLT 899 + + + + + ++ E GI L Sbjct: 917 SGLLPMVGFGECLRHELIEPLPDLLQRYQQLLALWPTPHTGAE-----PISFEHQGIALE 971 Query: 900 GFADRIDLLKSGFVD 914 G+ + G + Sbjct: 972 GWVSGLHRRGDGALL 986 >gi|229493655|ref|ZP_04387440.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319616|gb|EEN85452.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 353 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 81/319 (25%), Gaps = 24/319 (7%) Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 R Q + V + S S Sbjct: 27 RHAQMIPVRLFPVSSPPAPTELSDQPHSLPGVSSVELPTPTPTGATSHERPRSRPALSPS 86 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 P R + ++ P RGT+ H + L P+ Sbjct: 87 RAGDYKQCPLLYRFRAVDRIPETPTR-----AQVRGTVVHAALEALFALPTGHRVPDRAA 141 Query: 834 LMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKM 889 + + E+ + F + + + + + + + Sbjct: 142 ELVRPAWERVSAESPEAADLVPEGELDSFLDEVGKLVATYYTLEDPTRFDAEACEVYVET 201 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 +E G+ L GF DRID+ +G V + DYKTG P +E + Q+ A L Sbjct: 202 ELE-NGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP-REFTESKALFQMKFYALVLLR--- 256 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFI 1009 A L I L + + + + K +L G Sbjct: 257 --TRGIVPAQLRLIYLASGSILTYAPDHDELIRFERTLSAIWK------AILAAGATG-D 307 Query: 1010 SHLRLSEKSNIQSEYDHLA 1028 + + ++ L Sbjct: 308 FRPKPGK-LCDWCDHKSLC 325 >gi|237806834|ref|YP_002891274.1| exodeoxyribonuclease V, gamma subunit [Tolumonas auensis DSM 9187] gi|237499095|gb|ACQ91688.1| exodeoxyribonuclease V, gamma subunit [Tolumonas auensis DSM 9187] Length = 1130 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 99/894 (11%), Positives = 215/894 (24%), Gaps = 92/894 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 LA+ TI V + Q L+ + G + I L + +L P Sbjct: 29 ALAAETILVQSPGMAQWLKQALAQDLGVAANIT---FPLPSSFIWQMFHQVLPEVPQENP 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + L L +L+ D + L+ L + +AD+ D Sbjct: 86 YTKPAMLWRLMQLLPQ----CMDDVLFAPLAGYLAEDHDGRRCYQLCQRIADLFDQYLVY 141 Query: 163 EKKWEDLHALKNEKYGM--WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 W + W W + + + +++ L + Sbjct: 142 RPDWIVDWESGGAQGAETQLWQPVL---------WRKLVALTEQQASHLHRVNLFSSFIN 192 Query: 221 HLMKGTKGPI-----IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI----- 270 L G + + G + P + + H ++L + + Sbjct: 193 TLKAGKPKAVLPQRLFVFGISSLPPHYLEALMALGEHCEVHLLLTNPCRYYWGDLQEENQ 252 Query: 271 --WNTITEKSTNITSSNTTYSTH-----------------PQYSLAKLLDFLDIKREDVK 311 + + H Q L+ R+ + Sbjct: 253 INQRVLNKLLAQRREQWQQAEQHKPLLPETDWQQLFSDEGEQQGNPLLVSLGKQGRDYLS 312 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFSDVALIEADNER 368 L +S I+ L ++ I + L + Sbjct: 313 LLAEISAAEIDAFAEINGDSLLHLLQQDLLELQDGTRLRPKRPISASDRSLVLHGCHSPL 372 Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISAGI 419 E + L + K+ ++ AD N + I IS Sbjct: 373 REVEVLHDQLLQRFAADPTLTPKEVVVMVADINRYGPYVQAVFGNATGERYIPFSISDRS 432 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 +LL+ + + L+ P F + Sbjct: 433 ATQENPLLQSFLTLLSLPDQRCTATELLELLAVPALLKRFGLAEADLTTLRRWAMESGVR 492 Query: 480 KNSYDIMDLKSLVLDRIA-----TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + + R + + D + + L Sbjct: 493 WGLESGDGERFELPPRERHTWSFGLERMLLGFASGNETLFADVAPYTAIEGQNAVKLGQL 552 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK------TLSSLF 588 + + L + + + LD + L ++ TL S Sbjct: 553 ARFIAQVMALRDELETARPITEWQNLVDRLLLDFYLPQEQLEEDDAAALNLIRSTLQSWQ 612 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++ + + D + ++ + + + R + F + L G Sbjct: 613 QRLSQMQYQEPLPLTVFHDHLQSELNAVRGGQQFLAG-RVNFCTLMPMRAIPFRLVCLLG 671 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--N 706 +N+G++P++ F Q ++ + + + L + + Sbjct: 672 MNDGLYPRSMPPLGFDLMADQPRKGDRSRREDDRYL-FLEALLAAQQQLYISYVAHSAID 730 Query: 707 NIPTIASRWLQRLLVLGGTD---FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP---KPF 760 N + S + L+ D K + + L Y R Sbjct: 731 NRDLMPSVLVTELVEYCQRAFLLPEDEEKAETEQETALHQHLLTGHPLVPYDRRYFSPTV 790 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 PP A +Y+ + L A + L L K + + D F N + Sbjct: 791 PPATADLFSYAAEWLPALTPTGQAGFFDARLSLPEELQGKPEIELADWLRFFRNPVAGFF 850 Query: 821 KKRINKNTPEINHLMKQI------------IDSHFEKENLPPHIDIIWRHLFHK 862 ++R+ E +++ + + +W+ Sbjct: 851 RRRLRVQFVEREAALEETEPFWLDKLQQYQLRERLLRYQRLDVDQAVWQARLLA 904 >gi|261749623|ref|YP_003257309.1| hypothetical protein BPLAN_563 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497716|gb|ACX84166.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 900 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 75/435 (17%), Positives = 156/435 (35%), Gaps = 49/435 (11%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP---FL 664 I + I E + S + ++G L S + +T I+ +NEG+ P NT +N + Sbjct: 471 IYQQFIKTEKISYIQRNSKGIHLIGFLGSYFESVETTIMTSVNEGIIPPNTEENYYKTLI 530 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTRHLIYTR-SLRENNIPTIASRWLQRLLVL 722 ++ +L +++K +H F ++++ + + SR++ ++ ++ Sbjct: 531 PNDIRKKFHLSSSQKNENFYSHHFRNLLENSKNIYLIYKNKPDELNSGEKSRFIHQIEMI 590 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDY-TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 ++K+R L + K+ + E S S I + Sbjct: 591 SN----FSIKERKNHPLILSTKISPISPIVIKKSNSMIQRLYELATHGLSPSSIHLYNYN 646 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN-----KNTPEINHLMK 836 P Y +++L L+ +K + + G + H I+ L + + Sbjct: 647 PLIFYYKKVLGLN----IEKISLKQEIGKIIHKILEVLYHPIKGNFITIDGIDTMKKNYE 702 Query: 837 QIIDSHF-EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI---FVNIPAKMAIE 892 II E + P ++ + + +F+ EEKI KI + ++ Sbjct: 703 SIIKKIISENKKNPEGKSLLINSIVNNYIKNFISWEEKIFHKGHKIFIKELECKVSTLLD 762 Query: 893 SIG---IHLTGFADRIDLLKSGFVDITDYKTGDNP------KKETAQKLI-DP------Q 936 ++L G DRID G I DYK G + +K+ DP Q Sbjct: 763 IGSNKKVNLYGIIDRIDE-CDGTTRILDYKIGISKINKIHISLNKIEKIFQDPHYGNIMQ 821 Query: 937 LSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK----KYSADELSEKSLK 992 L + F + + ++ +K KI+ I + + + ++ L Sbjct: 822 LLIYMYL----WFKSFHKKNPPVIAFVS-PEKNKINSIQTIPINFFHQITYENYIKEFLP 876 Query: 993 NLIEIVTLLQNGEQP 1007 L+ + + + + P Sbjct: 877 YLMNRIYEILDPKIP 891 >gi|148826408|ref|YP_001291161.1| exodeoxyribonuclease V subunit gamma [Haemophilus influenzae PittEE] gi|229846001|ref|ZP_04466113.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 7P49H1] gi|148716568|gb|ABQ98778.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittEE] gi|229811005|gb|EEP46722.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 7P49H1] Length = 1121 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 119/984 (12%), Positives = 249/984 (25%), Gaps = 144/984 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + +Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + S +LL + L+ P + Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL---------- 731 E R + R +N P S + +LL +N+ Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 732 -------------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + +L + D + P + + + Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIA-QFDTAASNSEFAVTMTENPEKIEEVEL--DSLVSF 838 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMK 836 + +P + + L + F ++ D ++ ++ +L + Sbjct: 839 VENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDE 887 Query: 837 QIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-- 892 Q +F + + + I + LE +EKI E +I +A++ Sbjct: 888 QNFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQ 947 Query: 893 --SIGIHLTGFADRIDLLKSGFVD 914 + I L G+ D + S + Sbjct: 948 NENQKIRLFGYMDALFGDDSQVIH 971 >gi|183597801|ref|ZP_02959294.1| hypothetical protein PROSTU_01130 [Providencia stuartii ATCC 25827] gi|188022556|gb|EDU60596.1| hypothetical protein PROSTU_01130 [Providencia stuartii ATCC 25827] Length = 1124 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 86/746 (11%), Positives = 201/746 (26%), Gaps = 89/746 (11%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 E++ L+ + P I V + Q L+ E + G + I Sbjct: 11 ELLKELIAHLMENEPLSHPFEQE-----IILVQSPGMSQWLQIELAKRFGIAANI---YY 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L P S + +L+ I + + + L Sbjct: 63 PLPATFIWDMFRRVLPDI---PKESAYTKQAMTWKLMKILPEVIDEDEFEPL-RHYLHND 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLKIAS 192 + LA +AD+ D +W E ++ L + W +L++ Sbjct: 119 LDKRKLHQLAGRVADLFDQYLVYRPQWIEKWQQNELINGLGTNQL---WQKRL-WLRLV- 173 Query: 193 KYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 +T+ L + + + + + I I G + P + ++ +A Sbjct: 174 -AYTDSLGQSPW-HRANLYQSFIDKLSTTQGVRDALPKRIFICGISSLPPVYLQALNAIA 231 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------- 297 H + ++ + I + + H Sbjct: 232 EHTDIHLMFTNPCRYYWGDIHSHAFLAKLQKRKLHHYIDKHEISRFKIDEHAQGLFNAEG 291 Query: 298 ------KLLDFLDIKREDVKRLGNVSNEMYGRSMVIS------KSFLPPDTSDMRNTDIL 345 LL D + + S + L D D+ N L Sbjct: 292 EQELANPLLASWGKLGRDNLYFISQIDGANEISAFVDTDRSCLLEHLQQDILDLENHAQL 351 Query: 346 ENKIPN---------IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALI 392 + + + V + + E + L +++ + ++ Sbjct: 352 GTTLTDYNTSQNKRVLTLSDQSVTFHSCHSAQREVEVLQDKLLALFEQDPSLTPRDIIVM 411 Query: 393 TADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 +D + + ++ I IS L LL+ + Sbjct: 412 VSDIDSYTPFIQAVFGNTASKRYIPFSISDRKALQAHPILQAFILLLDLPQSRFSTEQVL 471 Query: 448 TLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIAT 498 TL++ +F E+ L + + +R + ++ L + Sbjct: 472 TLLEVSAFAARFDIDERELGLLRRWVNESGIRWGLDDDNVRALSLPVIGQNTWEFGLSRM 531 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLT 557 + + + L + + LV T K + ++ +W ++ Sbjct: 532 LLGYAMDSRYGPWHDVLPYDESSGLAAQLAGKLALLVNTLKEWRTLLDIERTLDEWKEVC 591 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + + L + + +G + D + D E Sbjct: 592 QQLIDSFFHVDGD--AELVLTLVTEQWHKIIQNAQGSGYDEQVPLRLIRDELAVCFDEEK 649 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + + + + R + F + L G+N+G++P+ L + ++ + Sbjct: 650 ISQRFLAGA-INFCTLMPMRSVPFKVVCLLGMNDGIYPRTIPP---LGFDLMAEKPARGD 705 Query: 678 EKYIGQAAHDFEMAN--GTRHLIYTR 701 K + F A + L + Sbjct: 706 RKRRDDDRYLFLEALNSAAQQLYISY 731 >gi|238896337|ref|YP_002921073.1| exonuclease V subunit gamma [Klebsiella pneumoniae NTUH-K2044] gi|238548655|dbj|BAH65006.1| exonuclease V gamma subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1125 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 104/974 (10%), Positives = 244/974 (25%), Gaps = 123/974 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAPQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + D + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRDELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +++ + ++ + R ++ + ++ Q Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQ----------S 940 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G++LTG Sbjct: 941 MEIDLQCGGLNLTG 954 >gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1160 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 108/981 (11%), Positives = 245/981 (24%), Gaps = 142/981 (14%) Query: 70 KKSTILPIIK-SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK 128 ++ I P+I S+ + + + + + LA L W + + Sbjct: 231 HEAVIAPLIAASVEEWRSIHRMWCGPRGILSGLTLGDTKLGIRLAGLRDRWCEDIDEDRY 290 Query: 129 DLYPESPLSLPISPANAIWLAKNLADIIDIIETEE-----KKWEDLHALKNEKYGMWWLL 183 + LA ++A ++ + ++ + L E W Sbjct: 291 IDFLRDLCEAIKGARG--KLADSIASLLPEEKVKDHRESILSRSFIWNLAEE---GWSQR 345 Query: 184 AADFLKIASKY-------WTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGS 235 D + + W R + + RA + G +++ Sbjct: 346 ELDLTRGLLRLVALCWFCWESRKSGRGLIAFDDMLLHAGRALERNREYAGRFKEVLVDEF 405 Query: 236 TGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 + RL+ +V + + A + D + S Sbjct: 406 QDTNGLQDRLIRSVVSDGD-ARLFLVGDLKQSIYRFRHADLSLFGSYISKARKGGRYVSL 464 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ-- 353 + + G++ + G ++ L P + + + + Sbjct: 465 DVSFRTRDVLLDRVNRLFGHIWRDGLGATLHHRYESLRPPVDQPWHGARQDVSVAPWENI 524 Query: 354 --KCFSDVALIEADNEREEAISIAIALR--------------MSLDENKKKSALITADRN 397 + D L D A +A L + + A++ R Sbjct: 525 ILEAGEDEKLSAEDRRDRSASLLAAKLTGMVGEETIWDKAESSARTMRWRDVAILVPSRT 584 Query: 398 LARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 L ++ L +GI + +LL +F D +A+A + P + Sbjct: 585 LFPSIQRVLGDLWGIPLHFEKNTGYYARTEVQDCVALLRCLFDREDHLALAGYICSPFSG 644 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + R+ + + E Sbjct: 645 LSLADGS-------------------------------RLLDRSAGKDLSEELRGQYPEI 673 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + I + ++W + V +D R+ + Sbjct: 674 FARLERWRE-IGLVQGASRVMEELVADGAVLDRFAEWKRRGVAANLRRTVDLLREYEST- 731 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 G+ + A + + + E + ++ S Sbjct: 732 -----------------LGNGLSGAASWLGEALRKRAKEEEAGAVGPDEDVVRVMTVHAS 774 Query: 637 RLLNFDTLILGGLNEGVWPKNTA--KNPFLSRVMQSDLN-------------LKTAEKYI 681 + L F +++ G + ++ + +L + D L+ + Sbjct: 775 KGLEFPVVVVAGCDSNGKGFPSSLMPSAYLGAALSRDDGGNGDPISRKVHRLLEETAEKE 834 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + R + + + ++ V +D + +R Sbjct: 835 ESERLFYVACTRARDCLMLSGSWDPPEDSWFDMAIRSGEVDKASDVDGDPPERSIE---- 890 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHF 799 P S + + PY R L L + Sbjct: 891 -------RSLPERGPIVTISGSPGGLERISATSWALYRHCPYGWRLRFRQGLDLTWEQPD 943 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 + D G+L H I+ + + + S + P D + Sbjct: 944 GETGGGPDMGSLAHWILARW------DFSVDGLEKLLSSERSLLPGDLRPIWGDRETKDR 997 Query: 860 FHKISHSFLEHEEKI----QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 + EE + P ++ ++ + L G D + G I Sbjct: 998 LRGWLVDLISSEEGRKLRPLRDSGYLMREAPFRVPLKDGPL-LVGAVDVMWPGDDGAYSI 1056 Query: 916 TDYKT---GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKID 972 DYK G P + L + QL A+ G ++ RL+++ + + Sbjct: 1057 RDYKITLEGGAP-----EGLYEDQLRFYGLAVTLGM-----DASSVDMALWRLRERGRSE 1106 Query: 973 CITNDKKKYSADELSEKSLKN 993 + + L+E+ K+ Sbjct: 1107 KVFLSP-FEDWEGLAEEIRKD 1126 >gi|227357277|ref|ZP_03841634.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis ATCC 29906] gi|227162540|gb|EEI47529.1| exodeoxyribonuclease V gamma chain [Proteus mirabilis ATCC 29906] Length = 1125 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 96/744 (12%), Positives = 193/744 (25%), Gaps = 86/744 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q L+ + E G + I L + +L S Sbjct: 34 VILVQSPGMSQWLQIQLAESLGIAANIR---YPLPATFIWEMFTRVLSGIPKESAFSKDA 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165 +L L+ + D L LA +AD+ D Sbjct: 91 MTWKLMALLPNY----LDDPAFKPLLHYLKDDEDKRKLHQLAGRVADLFDQYLVYRPDWL 146 Query: 166 --WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ---IALMRAEAE 220 WE+ + +W A + +TE L + YQ L A Sbjct: 147 SAWENDQLIDGLSDNQYWQKTLWL---ALQRYTEDLAQPKWHRANLYQQFISTLNDAPVG 203 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 L I I G + + + + H ++ + I + N Sbjct: 204 ALAHCFPSRIFICGISALPQVYLQALQAIGRHTEIYLLFTNPCRYYWGDIQDPKFLARLN 263 Query: 281 ITSSNTTYSTHPQYSLA-------------------KLLDFLDIKREDVKRL------GN 315 H LL +D + Sbjct: 264 SRKPRHYQQLHELPWFKDEQNASTLFNEEGEQNVGNPLLASWGKLGKDNLYFLSELEYSD 323 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN---------IQKCFSDVALIEADN 366 V + L D D+ + + + + I + + + Sbjct: 324 VLDAFVDIPRDNLLHQLQADILDLEDFSQIGQTLEDYQSSEKKRIIANDDRSLTFHASHS 383 Query: 367 EREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINIDISA 417 + E + L L+++ + ++ AD + + I IS Sbjct: 384 PQREVEVLQDQLLHLLEQDADLLPRDIIVMVADIDSYTPYIQAVFGNAPAERYIPFAISD 443 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVA 475 +LL + L++ P F E L + +E Sbjct: 444 RKARQVHPVLQAFITLLELPQSRFTAEQVLALLEVPALAAHFAIFENELKLLRRWVEESG 503 Query: 476 LRGNKNSYDIMDL-----------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +R + ++ L+ + ++ P +E L L Sbjct: 504 IRWGLDDENVASFLLPVTGKNTWEFGLLRMLLGYAMDSEAGPWQGVLPYDESSGLVAELA 563 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 H+ L T + ++ +W + + + L + Sbjct: 564 GHLADF---LYTLSEWRTRLSETRNLEEWLDIGQQLVDAFFDTDEETELVLAL--ITQQW 618 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 + +E + + D +T D E + + +L + R + F + Sbjct: 619 QKVIKNGLEAHYQHEIPLVLIRDELTVRFDDEKISQRFLAG-SLNFCTLMPMRSIPFKAV 677 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LIYTRS 702 L G+N+GV+P+N L + ++ + K + F A + L + Sbjct: 678 CLLGMNDGVYPRNIQP---LGFDLMAEKRRRGDRKRRDDDRYLFLEALSSAEKYLYISYI 734 Query: 703 LRE--NNIPTIASRWLQRLLVLGG 724 + ++ S ++ L G Sbjct: 735 GKSIRDDRECNPSVLIKELQDYIG 758 >gi|78188736|ref|YP_379074.1| exodeoxyribonuclease V, RecC subunit [Chlorobium chlorochromatii CaD3] gi|78170935|gb|ABB28031.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium chlorochromatii CaD3] Length = 1127 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 91/927 (9%), Positives = 218/927 (23%), Gaps = 103/927 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V ++ + L E G + + ++ LL S + Sbjct: 64 VIVVQSRGMQRWLSMELAGRFG---VWANGRYPFPNAMVQELFKQLLPSVAQSDAFKKEV 120 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + RL+ L ++ + L + L++ +AD D Sbjct: 121 MSWRVMRLLPH----LLEMAEFLPLRRYAADDSDGLKLFQLSEKIADTFDQYTLFRPDML 176 Query: 168 DL--HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK- 224 L + G W W LVE + L R + K Sbjct: 177 ALWEAGGGVAEGGEAWQPLL---------WRA-LVEGAGLHRGQLRELLFRQLSRSSSKI 226 Query: 225 -GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 I + G + L + VA + L I + + Sbjct: 227 SELPERITLFGISYLPQFHLELFAAVARLTEVHLFLLSPTQEYWGDIVSRKAMARLSEAE 286 Query: 284 SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 +P L I R+ + + +S+E ++ Sbjct: 287 QALRSEGNPL-----LASLGRIGRDFSEMVLEMSDEALDSQEFYDDPPEDSLLHALQWDI 341 Query: 344 ILENKIPNIQKCF-------SDVALIEADNEREEAISIAIALRMSLDENK----KKSALI 392 + + + V + E + A+ L+ + + ++ Sbjct: 342 LHLQGAGEMDETPRLLQPHDRSVQIHACHTPLREVEVLYDAILGLLEAHPHISLRDIIVM 401 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN------------AIFKL 440 T D + ++ + + Sbjct: 402 TPDIESYSPYIATVFGTAREAGKEGKGVVALPFSIADRRMMHEGEIASALLKLLALHGSR 461 Query: 441 NDFMAIATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + + P F + R + + ++L R + Sbjct: 462 LTASMLFDFLASPPVSRAFGFDAEALRLIRGWIEGSGIRWGMDEEDRRERNLPAYRDHSW 521 Query: 500 KNNTHVPHWQSRLSEE--DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + EE + + D L + + +S S+ ++ Sbjct: 522 RAGLERLLLGYAMPEEEQLFQGVLPYGDIAGSAAEMLGRFAEAVEALERFVSSSEPSRTL 581 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-----TGSCIKANAIEWIDIITRL 612 Q + E + + + G + + + + Sbjct: 582 EAWRQQYAMWLTTFFAPDEDSEREFATLATLGEELAEYGINAGFEENISPLVFFTWLRSR 641 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 ++ + + L R + F ++L G+N+G +P+ + F Q Sbjct: 642 LEEQEQGLGFMTGG-ITFCAMLPMRSIPFRVVMLIGMNDGAFPRQSRAPSFDLITRQPQK 700 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL----------- 719 ++ + + + + L + + +N S + L Sbjct: 701 GDRSL-RNEDRYLFLESILSARELLYISYVGQSIRDNSEIPPSVLVSELLDAVRRAFVLP 759 Query: 720 --------------------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + L + + Sbjct: 760 NESSIEQHLVVRHRLQPFHHDYFSEHSPLASYSSENYYALIASEQSLQAVPPIRSFISTA 819 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF---IPHFKKDPDRTDRGTLFHNII 816 A+ RT ++ ++P A + + L + + + + + Sbjct: 820 LSEPTAEWRTVQLEQLLHFYDNPSAFFLEQRLGIKPEGLLLPLQDSEPFAVESLERYRLQ 879 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 EL++ ++ E + + S P + + F + + Sbjct: 880 QELLEAQLRGQPAEA---LLPLFKS--RGMLPPAQHGELLFATVMQEVDDFAATLRQHLA 934 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFAD 903 + P ++ IE + G D Sbjct: 935 GEVALA---PLEVDIEVGEFRIVGRLD 958 >gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] Length = 1182 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 108/973 (11%), Positives = 236/973 (24%), Gaps = 141/973 (14%) Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNI---QRLLELARLILIWRNKLPDII-- 127 T+ P++ L + E A L P V + + L + + W Sbjct: 262 TLYPVMPLLQQIAEFAAFAMQNDQPQLKPLVDDPLTKESDLAAWQALGDWILSTQGKFLK 321 Query: 128 ----KDLYPESPLSLPISPANAIWLAKNL--ADIIDIIETEEKKWEDLHALKNEKYGMWW 181 K +P + L L ADI L W Sbjct: 322 TVTVKKGFPAGKGENKEQKDAFLALLAELNVADIRGQYAEALVLLSQLPEGHYSD--EQW 379 Query: 182 LLAADFLKIASK---YWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPI 230 +++ + + + + A +A + T + Sbjct: 380 QNLRHLIQLLRRTVAHLKLCFQTEGETDFIEVAQAASQALGHELEPTDLAQQLDYTLKHL 439 Query: 231 IIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT 287 +I + A L+ + + + + D + + Sbjct: 440 LIDEFQDTSVAQYDLVKKIVAGWSQEDAHSLFIVGDPMQSIYRFREAEVGNFLQAWKGR- 498 Query: 288 YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 L + + ++ S + P + + Sbjct: 499 ------------LGEVPLTPLSLEVNFRSSKGVVDWVNQTFAKVFPKKSLIEQGAVSYAP 546 Query: 348 KIPNIQKCFSDVALIEA--DNEREEAISIAIALRMSLDENKKKSA--LITADRNLARRVK 403 + ++ V A + EEA I ++ L K +A ++ R+ V Sbjct: 547 AVAFSEEASPAVYTHWALQQSAWEEAADILTLIQERLSTLKTDAAIGVLGRSRSHLMCVA 606 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 ++L + GI L +L ++ L D A L++ PL + Sbjct: 607 IQLKQAGIAFRAVELEGLKDRQEIQDCEALTRSLLHLGDRPAWIALLRSPLVGLSLTDL- 665 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 R+ + ++ L ++ L Sbjct: 666 ------------------------------YRLLGENDDYFQTPVWETLQDKTHSGWQQL 695 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 D Q + + ++ G+ ++ T + LD + + + + Sbjct: 696 SDAGRQQLGRSLPVLEKALNSMGSYALEVLAHET-----WLALDGPQTVESAMALQNVDA 750 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + A D + L + E S + ++ +S+ L FDT Sbjct: 751 FWMMLGNLEAQHDVSALTAKGLSDTLETLYA---LPDASEASQKIELMTMHKSKGLEFDT 807 Query: 644 LILGGLNEGVWPKNTAKNPFLS-------------------RVMQSDLNL-------KTA 677 +IL GL +LS + Q L + Sbjct: 808 VILPGLGRPPRSDEKQLLSWLSFKGQHEQSYLVIAPFEQKGKAAQKQPGLANVIKRYEEI 867 Query: 678 EKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 ++ + + + L S+ + L + + Sbjct: 868 KQSYELSRLLYVACTRAKQQLHLFGSVAVSEKAFNGDAALMPKKKSLLECLWSLEAPAFE 927 Query: 737 CYL---DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN---------DPYA 784 L + D T + P SE+ + D Sbjct: 928 VLLTDYQFKDVEDNTQELLPKVSRLPLERQGFWQTQREESELVKAARMGVVEDEDTDELL 987 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + G H + + ++ ++ + ++ Sbjct: 988 KVDVAAPSATPLSSLHGGVLAKTVGNFVHAVFEQWAQQDLSSWDATLLESQRERYRYGLM 1047 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF--- 901 + L + L + + + + + ++ + + G Sbjct: 1048 QMGLNRELLKTALERVMMSLSHALHNPKVRWA-LSREHTESAVELPLSAKEET--GQSNH 1104 Query: 902 -ADRIDLLKSGFVDITDYKTGDNPKKETAQKLID----------PQLSLEAAALKAGSFS 950 DR + + I DYKT ++ Q PQL L G+ Sbjct: 1105 IIDRTFVDEQNTRWIIDYKTSVFDLDKSEQDKKAFLQSQIDVYTPQLERYGQLL--GAIE 1162 Query: 951 QIDCRKVANLFYI 963 ++V Y+ Sbjct: 1163 NRPQKRVLYFSYL 1175 >gi|313126059|ref|YP_004036329.1| ATP-dependent exonuclase v subunit beta, helicase and exonuclease domain-containing [Halogeometricum borinquense DSM 11551] gi|312292424|gb|ADQ66884.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing [Halogeometricum borinquense DSM 11551] Length = 1152 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 89/859 (10%), Positives = 215/859 (25%), Gaps = 93/859 (10%) Query: 182 LLAADFLKIASKYWTERLVELNASSP---VGYQIALMRAEAEHLMKGTKGPIIIAGSTGS 238 L A L + L E N V LM + + + + Sbjct: 314 CLTARDLTAGYAAYERELDERNLIDFDGLVVEAAELMESPVGEEIAARWDYVFCDEFQDT 373 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 L+ ++ N + D W + + + Sbjct: 374 DRLQFDLVKSLVTDDN---LFVVGDDDQAIYEWRGAHVANITDELDRAFAALSDEPLEEN 430 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 I + + + + R + + D +E + S Sbjct: 431 FRSRQPILDLANEAIQKLDH----RERHKTLKRVDEPEYDGDTIATVELSDEDDADGASQ 486 Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + + + A + + D AL+ + A V E GI + AG Sbjct: 487 LRTVV----QNLLSGAAESFDEAYDPG--DIALLVRKNDHATPVIEEFEDAGIPYQV-AG 539 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + ++ +T+ L A+ + D ++ ++ + L+ + L Sbjct: 540 DLATESVGVGTVTAYLKALARPEDEVSWNRVLLMRYRLCDTDLRKLNAGDDPLVDTLRET 599 Query: 479 NKNSYDIMDLKSLVLD------RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + ++ D + I + +H+ + ++ + L+ + Q Sbjct: 600 PLDEFEEPDRVAEARKHVTELLAIRDSASLSHLYRELTDVTNIEWYLSEQERRDLAQLED 659 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE------------- 579 + Y + D + + + Sbjct: 660 VIEQYGDSAVQPPLTPEFIDSLEHYDSLFDESGSSPTSQPDVADDAVNVMTIHKSKGLDF 719 Query: 580 ---------EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 G+ S + S + + ET + + Sbjct: 720 PVVLIPQVTAGEWAPSSRTYDALETSLSDGAEAAFAEDFVERDARETRRVFHVGITRAED 779 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + L+ + D + ++E V ++ P+ Q L + + + A D+ Sbjct: 780 VLVLQGGSEDDDATDVHPVSESVDEILPSRIPWQPERGQLPLWADVQDC-LPREAVDWTD 838 Query: 691 ANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 T + ++ + R+L L L R + L + Sbjct: 839 TLATETVGHVGGTVNHAGEELAVAAARDRVLDLATATLNGELSPRAERETLQVASLTDPS 898 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-------IPHFKKD 802 ++S++ + P + Y ++ Sbjct: 899 TPSPSL-------------SHSYTSLAAYEECPRSHYLDYVVNAFPDYQETTVRSDSGGG 945 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 + + G LFH+ + K+ + + I + Sbjct: 946 VSQREIGLLFHDTAEQAAKQGVKRRGDWYE------ICERLASH----RRAEDALTAAKE 995 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD 922 + E E + E I ++ I+ L G+ D + + + DYK Sbjct: 996 CIDRYFELEL---PNCEIIDAEREFELDIDGHE--LVGYIDAVYRTPDDGLLVIDYK--- 1047 Query: 923 NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + D QL + + + V Y + + T Sbjct: 1048 -ATERHRDLEDDKQLPIYLL-----ACCDLYDEPVTRAGYAYVG-EIGPKVETRTFSDAD 1100 Query: 983 ADELSEKSLKNLIEIVTLL 1001 + +++ +++ ++ Sbjct: 1101 LEAVTDDVTESMTR-ISEF 1118 >gi|220931258|ref|YP_002508166.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168] gi|219992568|gb|ACL69171.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168] Length = 864 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 120/422 (28%), Gaps = 64/422 (15%) Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L+ D LI+ + GV P + L+ +++L L+T + + F Sbjct: 474 LSRDILIVLNASRGVIPSEAGNDFILTDRQRAELGLETINNLRLREKYYFYRHILNSQKT 533 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 SL+ S ++ L + G D + + R++ Sbjct: 534 IIFSLKNLESNLTTSSFVDELRLKYGLDLKEAEITS-RQLPAVIRRIFPAKPAALGMVSS 592 Query: 759 PFP----------PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF-IPHFKKDPDRTD 807 + S+ LI+ Y Y ++++L ++ Sbjct: 593 VSRKEDKLVIETDDFPGNQMSLSYYRYTTLIDCYYKFYLEKLVRLAEDRVVVDREMSPLL 652 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP------PHIDIIWRHLFH 861 G H + E++ ++ +N +++++I L P+ + Sbjct: 653 FGNFVHEVFAEVLNRQ-GRNLNVSKEVVEEVIVDKLNSYRLQINNYYLPYYRKVLLPTVR 711 Query: 862 KISHSFLEHEEKIQSSIEKIFV------NIPAKMAI---ESIGIHLTGFADRIDLLKSGF 912 SF K + E + + I + + L G D I Sbjct: 712 DSVISFFRG-LKRRVKGEIVDIKIEWQPEKSKDRVIFNHDFTDVFLNGRVDLIIETSD-T 769 Query: 913 VDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR-KVANLFYIRLKQKFKI 971 I D+KTG + QL + L KVA Y +K FK Sbjct: 770 RFIIDFKTGQ---------GKEDQLDFYSLLLA----PDYGSEKKVAKELYNVMKASFKA 816 Query: 972 DCITNDKKKYSADELSEKSLKNLIEIVTLLQNG---EQPFISHLRLSEKSNIQSEYDHLA 1028 + E+ + + E + G + S + + Sbjct: 817 GAPGTE----------EEFAREISEEIKNFFEGGEYTTIYKSR-------CKDCNWMDIC 859 Query: 1029 RV 1030 RV Sbjct: 860 RV 861 >gi|70734237|ref|YP_257877.1| exodeoxyribonuclease V subunit gamma [Pseudomonas fluorescens Pf-5] gi|68348536|gb|AAY96142.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas fluorescens Pf-5] Length = 1139 Score = 102 bits (253), Expect = 4e-19, Method: Composition-based stats. Identities = 117/972 (12%), Positives = 251/972 (25%), Gaps = 89/972 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI----TGKKSTILPIIKSL 81 L +V R PL P L + V + Q L+ E G I I Sbjct: 11 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPEVDDGGGCGIAAAIDVQ 68 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 L+L + PP S + + RL+ + + + + L+ Sbjct: 69 LPGSFMWQLYRLVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDEPHFEPLQRF-LTHDSD 127 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLK---IASKYWTER 198 LA+ LAD+ D + W + A + ++ W Sbjct: 128 LRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGETKALTPANCWQAELWRAL 187 Query: 199 LVELNASSPVGYQIALMRAEAEH------LMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 L+++ + + + E G +I+ G + ++ +A Sbjct: 188 LLDVGTEGMAQSRAGVHQRFIERINQLEVAPSGLPSRVIVFGISSLPAQALEALAGLARF 247 Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H I + T Q++ L + Sbjct: 248 SQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPQALDPQTLHQHAHPLLAAWGK 307 Query: 305 IKREDVKRLGNVSNEMYGRSMV------ISKSFLPPDTSDMRNTDILENKIPNIQKCF-- 356 R+ + L + + RS + P DILE + N + Sbjct: 308 QGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDSQPASMLQQLQDDILELRPLNETRELWP 367 Query: 357 -------SDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLE 405 + A + + E + L D + ++ D + Sbjct: 368 QVDIQHDQSIRFHIAHSAQREVEILHDQLLARFSAEPDLRPRDVIVMVPDIDSYAPHIRA 427 Query: 406 L-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAK 456 + R I ++ + LL I L+ P A+ Sbjct: 428 VFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALRAR 487 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQ 509 FG E L +E +R N+ +L ++ + V Sbjct: 488 FGVDEADLPTLHRWIEGAGIRWGMNAEQRAELGLPPELEQNSWRFGLRRMLLGYAVGRSD 547 Query: 510 SRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + E + L I + L + ++W + L+ L Sbjct: 548 ACDGIEPYDEIGGLDAALIGPLVALLDALQIAYQQLTQPADPAEWGERLHNLLEQFFLAS 607 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + L + + G + + +D + + + + Sbjct: 608 NEHDDYL-LGQLDDLRENWLETCESVGLQDQLPLTVVREAWLAGLDQGRLSQRFLAGA-V 665 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 + R + F + L G+N+G +P+ F ++ + Sbjct: 666 NFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LLE 724 Query: 689 EMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL------------------VLGGTDFF 728 + + L + R +N AS + +L L Sbjct: 725 ALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWRLPDEQDSLLEALTQEHPL 784 Query: 729 DNLKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 R + R+ + Q S ++++ + +P Sbjct: 785 QPFSARYFHDSDTLFSYAREWQVLHQVREELGAVERLEPYVQDEPLSLAQLQDFLRNPVR 844 Query: 785 VYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 + + LK+ + + D + L +++ + + + + ++ Sbjct: 845 HFFSQRLKVFFEAMEAPLADEEPFVLDALQRYSLSDSLLEAALGDAAQPEQALQAQAQRL 904 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 LP L + + V +++E G+ L G+ Sbjct: 905 QASGLLPMAGFGECLQRELLEPLPDLLQRYRQLLDLWPTPVTSALPVSLELQGVRLEGWL 964 Query: 903 DRIDLLKSGFVD 914 + G + Sbjct: 965 SSLHQRADGGLL 976 >gi|320535503|ref|ZP_08035606.1| conserved domain protein [Treponema phagedenis F0421] gi|320147642|gb|EFW39155.1| conserved domain protein [Treponema phagedenis F0421] Length = 923 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 104/723 (14%), Positives = 218/723 (30%), Gaps = 86/723 (11%) Query: 361 LIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVK-LELTRFGINIDISA 417 LI +N R E + + + L+E + + + + E I D Sbjct: 225 LISFENTRAEIRNTVLRIEQLLNEGVSISEIVVSVPNIKEMMPYLKREFALRSITADFRT 284 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G L+ + + + +A+ + F ++ L AL ++ Sbjct: 285 GFSLADNQAGFLFSQITDAVDQHYSFESMKAL-----VFNKHIPWADECGARALMSYGIK 339 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 N D K + K + + E++KE A + +Q L + Sbjct: 340 NN-CVVSWQDEKRYKNVWFESFKISKEENPAE----EDEKEAAKNWIIPFMQMAEKLTSA 394 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 KT + D + + D+ L + L F + + Sbjct: 395 KTFTEIQTAYFTFRD---RFIVEDKFSAEDDMVMSRCLACLRQLSELEEEFKDCLPSSP- 450 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + E P+ E + I + F + N+ Sbjct: 451 --------YRFFITQLQNEIYVPQNEGLG-IAIFPYRVAAGAPFTYHFVLNCNQNSTCVI 501 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-------FEMANGTRHLIYTRSLRENNIPT 710 K PFL + + LN+ + A F A T + + Sbjct: 502 YKKLPFLRQDKRYLLNVANTDASQAFFAAYAKNGNCFFSFAEQTISSFVIANSNFTQTVS 561 Query: 711 IAS-----RWLQRLLVLGGTDFFDNLKK---------RGQCYLDWTRKLDYTTKQPHYKR 756 S +L+ L++ G F G+ L + K Sbjct: 562 PPSIDETDSFLEELMMYQGGKAFTQAYSIQKNGFEVWSGRNTEKGFSYLQNSFKHQIAAL 621 Query: 757 PKPFPPLEAQPRTYSF--SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 + ++ + + ++ P + R+L ++ + + + G L H Sbjct: 622 TERIHAVQFKGSAVLVNQTGLRNFFFCPSYWFLSRVLTINDEQYEAELFNPRYVGILIHE 681 Query: 815 IITELIKKRINKNT-----------PEINHLMKQII--DSHFEKENLPPHIDIIWRHLFH 861 ++ +L +K K+T ++++ S ++ P I+ ++ +F Sbjct: 682 VLEKLYQKIKAKDTKFCSANTATYKEWAKDIIQKTAKMRSEYQGPLATPFIESLYSRIFE 741 Query: 862 KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTG 921 L + + + ++ ES GI G DR+ + G + DYKTG Sbjct: 742 A-VEYALSFDCEKLDGWLLSKIEE--RIEFESGGIFYEGIIDRVSVSAEGSSVLLDYKTG 798 Query: 922 DNPKKETAQ------KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 P + +L+D Q+ + L+ + V + F+I L+ + + I Sbjct: 799 RRPPASSYTDYEKNGELLDFQMPMYVHLLEHS-----EKELVEHAFFIGLR-EQDVSFII 852 Query: 976 NDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL---------RLSEKSNIQSEYDH 1026 N+K S + ++T Q Q F + + ++ ++ + Sbjct: 853 NNKAVIDQGRKRSVSREQFSGVMTCFQTSVQDFAAAVKSENFIKPENVTWQTCKACGFKG 912 Query: 1027 LAR 1029 + R Sbjct: 913 ICR 915 >gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens KN400] Length = 739 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 79/723 (10%), Positives = 180/723 (24%), Gaps = 126/723 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R ++ G + +P+I + Sbjct: 53 QILAVTFTNKAAGEMRERVEKLVGGE---VPLIATFHSTCARIL---------------- 93 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 E+ L + D + + + A +LA ID + Sbjct: 94 ---RREIHHLGYDSSFAIYDDKDSGKLLKEVMAGLGLDEKRFPATSLASAIDDCKNRGLA 150 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221 EDL A + + + ERL + NA + +R EH Sbjct: 151 PEDLPADTF---------TGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPVVL 201 Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + P RL+ +A V+ D W ++ Sbjct: 202 ERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVV--GDDDQSIYRWRGADIRNIL 259 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + T L+ + + + + R+ L + Sbjct: 260 DFEKDFPGVT---------TIKLEQNYRSTRNILAAAGAVVARNRGRKAKTLWSENPPGD 310 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 +ER+EA + + + + A+ Sbjct: 311 PIVYRRL-----------------ADERDEARFVCREIERYVRRGGDLRDVAVFYRTNAQ 353 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R V+ L GI + G+ + + + L + D +++ ++ P Sbjct: 354 SRVVEDALVADGIPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVP----- 408 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + L + R T + LS + Sbjct: 409 ------------------ARGIGPGTVDKISELAVRRGITILDALGEAATGGLLSSAPRG 450 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL-DEHRKLPNLWF 577 + + L +++ T + + R Sbjct: 451 KVAAFAAVMERFFA-----------LRDQLPLAELTTRIIEESGYADRLRQERTDEAADR 499 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + L + + T + ++ ++ + ++ ++ Sbjct: 500 LANLQELVAAMEEFERTSDERGLAP-----FLEQVALVSDLERSGTGRESATLMTLHAAK 554 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH- 696 L F + + G+ E ++P + L E + + R Sbjct: 555 GLEFPMVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARER 600 Query: 697 LIYTRSLREN----NIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 L T + R + + SR++ + L + G D + + Sbjct: 601 LCLTNARRRRIFGQDQVNMPSRFIADIPRNLLDLEDEWQQPALGSVAPDTAGRGREPARH 660 Query: 752 PHY 754 Sbjct: 661 NLA 663 >gi|329122963|ref|ZP_08251534.1| exodeoxyribonuclease subunit V gamma [Haemophilus aegyptius ATCC 11116] gi|327471894|gb|EGF17334.1| exodeoxyribonuclease subunit V gamma [Haemophilus aegyptius ATCC 11116] Length = 1126 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 93/758 (12%), Positives = 185/758 (24%), Gaps = 99/758 (13%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNATLFAQIQGNTKWHGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQLNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNLLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDALVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL 719 E R + R +N P S + +L Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQL 759 >gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583] gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583] Length = 816 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 88/703 (12%), Positives = 195/703 (27%), Gaps = 118/703 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E++ E+ GK +P + + V Sbjct: 92 QILAVTFTNKAANEMKIRIGELVGKTVEGMPWLGTFHSTG-----------------VKI 134 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D + L + L + + W A++LA +ID + + Sbjct: 135 LRRHAELVDLKSNFTILDNDDVLRLLKQ--LIQAENLDDKRWPARSLAMMIDSWKNQGLS 192 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEAE 220 E + +G + RL LNA + + Sbjct: 193 PEHISESDAHSFGNGVGRKL------YHSYQNRLKSLNACDFGDLLLHPIHIFQHNPDIL 246 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP--GLDCHIPTAIWNTITEKS 278 + I++ + A + +A + V D W + Sbjct: 247 REYQDKFRYILVDEYQDTNTAQYLWLRLLAQSSTKSQVNLCCVGDDDQSIYGWRGAKIDN 306 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + ++R + + S + + Sbjct: 307 ILRFEKDFPPA-----------KIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFSDQ 355 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396 N + V + A + EE+ +I + + + A++ Sbjct: 356 SNNEET-------------KVKIHAAWDSEEESRAIGKEIEQTQQSGHSLNQIAILVRAS 402 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 R + G+N + G + + L + + D +A ++ P Sbjct: 403 FQMREFEDRFVALGLNYRVIGGPRFYERMEIRDAMAYLRVVVQPADDLAFERILNTPKRG 462 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G +++ L A + T ++ Sbjct: 463 LGNAALRHLYNSARA-----------------RAIPLFAAAAEIIETDDLKPKAC----- 500 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + L + N + L + T+L T L + +W Sbjct: 501 ---------------SALRSVIENFHRWQDMLKHTPHTELAETILDDSG------YIAMW 539 Query: 577 FEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 E+ + + E ++ + +++ ++ ++D ++ E + I+ Sbjct: 540 QEDRSPEAPTRLENLKEMIRSMEKFEDLHSFLEHVSLVMDADS----NENMDAVNIMTLH 595 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FDT+ L G EG++P + + + E+ A A Sbjct: 596 SAKGLEFDTVFLPGWEEGLFPHQRSLD---------EGGRLGLEEERRLAYVGITRAKKH 646 Query: 695 RHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735 H+ + + R + T+ SR+L L G Sbjct: 647 LHIWFVSNRRIHGLWQSTLPSRFLDELPEQHIEVADIETSYGG 689 >gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA] gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens PCA] Length = 739 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 81/722 (11%), Positives = 179/722 (24%), Gaps = 124/722 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R ++ G + +P+I + Sbjct: 53 QILAVTFTNKAAGEMRERVEKLVGGE---VPLIATFHSTCARIL---------------- 93 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 E+ L + D + + + A +LA ID + Sbjct: 94 ---RREIHHLGYDSSFAIYDDKDSGKLLKEVMAGLGLDEKRFPATSLASAIDDCKNRGLA 150 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221 EDL A + + + ERL + NA + +R EH Sbjct: 151 PEDLPADTF---------TGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFEEHPVVL 201 Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + P RL+ +A V+ D W ++ Sbjct: 202 ERYRDQWRWILVDEYQDTNPIQYRLVRLLAGEHRNLCVV--GDDDQSIYRWRGADIRNIL 259 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + T L+ + + + + R+ L + Sbjct: 260 DFEKDFPGVT---------TIKLEQNYRSTRNILAAAGAVVARNRGRKAKTLWSENPPGD 310 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 +ER+EA + + + + A+ Sbjct: 311 PIVYRRL-----------------ADERDEARFVCREIERYVRRGGDLRDVAVFYRTNAQ 353 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R V+ L GI + G+ + + + L + D +++ ++ P Sbjct: 354 SRVVEDALVADGIPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVP----- 408 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 +D S + R + L Sbjct: 409 -------------------ARGIGPGTVDKISELAVRRGITVLDALGEAATGGLLSSAPR 449 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 V +++ L T + S + + D L Sbjct: 450 GKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYADRLRQERTDEAAD------RLANL 503 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 +E F + + + ++ ++ + ++ ++ Sbjct: 504 QELVAAMEEFERTSDERGLAPF--------LEQVALVSDLERSGTGRESATLMTLHAAKG 555 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + + G+ E ++P + L E + + R L Sbjct: 556 LEFPMVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARERL 601 Query: 698 IYTRSLREN----NIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 T + R + + SR++ + L + G D + + Sbjct: 602 CLTNARRRRIFGQDQVNMPSRFIADIPRNLLDLEDEWQQPALGSVAPDTAGRGREPARHN 661 Query: 753 HY 754 Sbjct: 662 LA 663 >gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] Length = 1222 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 70/688 (10%), Positives = 167/688 (24%), Gaps = 56/688 (8%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 108 GTGQVAPEQVLGLTFTNKAAGELAERVRTALIRAGVTDPDVIDPDHPPGEPAISTYHAFA 167 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A + L + P P + L Sbjct: 168 GRLLTDHGLRLGLEPTSRLLADATRYQLAARVLREA--------PGPYPALTRSFADLVS 219 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYG---------------MWWLLAADFLKIASKYW 195 +L + + + EDL A A L + Sbjct: 220 DLLALDGELAEHLVRPEDLRAWDAGLLDTLDGVRLSNADLRKVPEAAAARRELADLVIRY 279 Query: 196 TERLVELNASSPVGYQIALMRA----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + + E +++ +++ + A L++ + Sbjct: 280 RAAKRRQDLLDFGDQIALSAQLAGLPEVGRVLRDDYRVVLLDEYQDTSVAQRILLAGLFG 339 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G V D W + + + + ++ + L Sbjct: 340 GGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPAARQAL------------ 387 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 S ++ + + + + + + V EE Sbjct: 388 -----SENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGMVRCALLSTHAEEI 442 Query: 372 ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 IA ++ + + + A++ ++ L + +++ L + Sbjct: 443 DWIADSVAHLVRTGKAPGEIAVLCRTATDFAEIQGALVARDVPVEVVGLSGLLHLPEVAD 502 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L ++ + ++ L+ P + G + L + L + R + L Sbjct: 503 LVAVCEVLQDPGANASLVRLLSGPRWRVGPRDLALLGRRARLLVSHARVEGDDDPDRRLA 562 Query: 490 SLVLDRIATQK---NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 V ++ + ++ L + + L T Sbjct: 563 EAVEGVDPSEVISLADALDTFLETPLDGTGDDDGLPFSADARVRFARLATELRELRRALS 622 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + ++ V L E + + A Sbjct: 623 DPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGF 682 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + +T+ +L +S+ L +D + + GL G +P + + ++ Sbjct: 683 LRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQ 742 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGT 694 L+ + + A Sbjct: 743 GKVLPHGLRGDAETLPDVASWDARGLKA 770 Score = 54.2 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 82/760 (10%), Positives = 170/760 (22%), Gaps = 47/760 (6%) Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P +S + + P A ++ + ++ + A+L Sbjct: 485 PVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLSGPRWRVGPRDLALLGRRARL 544 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L D ++ + G S+ D D L+ + FS Sbjct: 545 LVSHARVEGDDDPDRRLAEAVEGV--DPSEVISLADALDTFLETPLDGTGDDDGLPFSAD 602 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A + E + AL L + + +T L + Sbjct: 603 ARVRFARLATELRELRRALSDPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLD 662 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-ALELVALRG 478 ++ +LL + L + + L K L+ K+ LE + Sbjct: 663 VAASFAAGDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAV 722 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 A K H + + + + + + Sbjct: 723 PGLVTGTFPSGQGREKWTAQGKVLPHGLRGDAETLPDVASWDARGLKAFHEAMKDHQHTE 782 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL-----WFEEEGKTLSSLFSKIIE 593 + + L + + E Sbjct: 783 ELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLTALYEHCAAGHGEIEVWADEPAE 842 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI-LGTLESRLLNFDTLILGGLNEG 652 + ++ +D + + + T+ L L +R + + Sbjct: 843 DEENPALHRATADEVWPLPLDDAALARRRSAAETVLAHLDGLAAREDGPPSAPATYEDPD 902 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 P T +P A Sbjct: 903 WPPPPEDDEGLPEEAEPDRAGDPAHWDSWTTERPAAAREAATAPESPAAPQAGPTVPHQA 962 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 Q + + W R LD T + R + + Sbjct: 963 PPPEQPPGTAPVPAPARLTPEEARTVASWDRDLDALTGELLRARESVTEVPLPA--SLTA 1020 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S++ L DP A+ + + P RGT FH + + Sbjct: 1021 SQLLSLAADPDGF-AQELARPMPRPPQ----PAARRGTRFHAWVEARFEPLTLPLLEPEE 1075 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + E H + +F E ++ V P ++++ Sbjct: 1076 LP-------GGDAEIADDH-------DLEFLKDAFERTEYARRTPFR---VEAPFQLSLA 1118 Query: 893 SIGIHLTGFADRIDLLKSG---FVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + G D + G +I D+KT + QL+L A Sbjct: 1119 GR--VVRGRIDAVYKEGDGDTATYEIVDWKTNRAATADP------LQLALYRIAWAEQ-- 1168 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + V ++ ++ + + L + Sbjct: 1169 QHVPPASVT-AAFLYVRTGEVVRPEGLPDRAALEKLLLAE 1207 >gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis ATCC 14580] gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580] gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis ATCC 14580] gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580] Length = 1230 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 89/841 (10%), Positives = 218/841 (25%), Gaps = 128/841 (15%) Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 + +EA + +++ + ++ VA + + D + Sbjct: 387 EAVPSEAAKFYRHQFHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFR 446 Query: 273 TITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVS------NE 319 T D LD K+L +E Sbjct: 447 LAEPLLFLSKYKRFTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDE 506 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + S +++ + + V L EA ++A +R Sbjct: 507 QAELKLGASYPPNEATKTELLLIETPSGAPGEEAEELEAVQL--------EARAMAGQIR 558 Query: 380 MSLDE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 + E + ++ A ++ E + GI + + Sbjct: 559 RLITEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFKQQGIPVYANLSTGYFEA 618 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 S+ SLL I + +A++++ P+ E L R K+ Sbjct: 619 TEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENELSLIRIKDKKAPFYEAMKAYLAA 678 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + L ++ + + W++ + + + + + K Sbjct: 679 ADGDERLSEKL---RRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQ 735 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ D + R + + + + S+ + + ++ + Sbjct: 736 ANLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 795 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF----------------------- 641 ++ G + + ++L F Sbjct: 796 GLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRR 855 Query: 642 ---------DTLILGGLNEGVWPKNTAKNP--FLSRVMQSDLN----LKTAEKYIGQAAH 686 + L E ++ TAK+ L+ L E++ ++ Sbjct: 856 ELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYL 915 Query: 687 DFE--MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 DF R + + + + Q + + + + G+ D + Sbjct: 916 DFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQ 975 Query: 745 LDYTTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 + + P+ S SE+K+ R +++ Sbjct: 976 IQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRP 1035 Query: 794 --------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 K +RGT H ++ + E++ L+ ++++ Sbjct: 1036 SQEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLT-RTPEKNELSRLLDRLVEKELLT 1094 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI-EKIFVNIPAKMAI-----------ES 893 E+ I+ +F + E + ++ +P M + Sbjct: 1095 EDQRAAIE-------EDDILAFFDTEIGQKLFGARRVEREVPFNMTLSAKEVYPDLESAD 1147 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAAL 944 + + G D + + G + DYKT G + + Q+ L A A+ Sbjct: 1148 EPVLIQGIIDCLFETEDG-FYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAV 1206 Query: 945 K 945 + Sbjct: 1207 E 1207 >gi|259909492|ref|YP_002649848.1| exonuclease V subunit gamma [Erwinia pyrifoliae Ep1/96] gi|224965114|emb|CAX56646.1| Exodeoxyribonuclease V gamma chain [Erwinia pyrifoliae Ep1/96] gi|283479566|emb|CAY75482.1| recC [Erwinia pyrifoliae DSM 12163] Length = 1122 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 96/954 (10%), Positives = 234/954 (24%), Gaps = 122/954 (12%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L S + V + Q L+ E + ++ + + + Sbjct: 28 DPLRSEVVLVQSPGMAQWLQMSLAEEFKIAA----------NIDFPLPASFIWDMFVRVL 77 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158 P + + + LP ++ LS LA +AD+ D Sbjct: 78 PEIPKESAFNKSSMSWKLMAILPGMLPGEAFTMLRHYLSDDDDKRKLFQLASRVADLFDQ 137 Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 +W + + + L A +T RL + + Sbjct: 138 YLVYRPQWLNGWEKGQLTEGLGDAQIWQAPLWAALVEYTRRLGQPEW-HRANLYRRFISR 196 Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I G + P + + + H ++ H I + Sbjct: 197 LENSSTRPPNLPDRVFICGISALPPVYLQALQALGKHIEIYLLFTNPCRHYWADIQDYAF 256 Query: 276 EKSTNITSSNTTYSTHP--------------------QYSLAKLLDFLDIKREDVKRLGN 315 P Q S L + + R+++ L + Sbjct: 257 LAKLQSRHRRHYQDNRPIPQFRDADNASSLFNDAGEQQLSNPLLAFWGKLGRDNLYLLAD 316 Query: 316 VSNE-------------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + + + + + + V + Sbjct: 317 MEPDEVFAFVDIEPINLLQTLKRDLLELEDHAVIGLLESEWENSRSKRVLNADDRSVEIH 376 Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413 + + E + L + ++ + ++ AD + + + Sbjct: 377 LCHSPQREVEVLQDRLLAMMADDPKLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPF 436 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471 IS SLL+ + L++ P +F E+ LS ++ + Sbjct: 437 AISDRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLSLLRHWV 496 Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +R + + +L + + + L+ Sbjct: 497 AESGVRWGLDDDSVRELDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556 Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + L+ + + W L L + + L E + Sbjct: 557 AELAGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFNSDAETDAALALIE--EQ 614 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + ++ G D ++ +D + + + + + R + F Sbjct: 615 WQQAINYGVQAGYRQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKV 673 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702 + L G+N+GV+P+ F +M L + E N + L + Sbjct: 674 VCLLGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYI 731 Query: 703 LRE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQ 736 R +N S + L+ + + Sbjct: 732 ARSIQDNTERYPSVLVSELVEYISQSFCLAEDSARDVDSSAEAVVKHLHHLHSRMPFAAE 791 Query: 737 CYLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARR 789 + + + + PP S + ++ + P + Sbjct: 792 NFSPQAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIGFDKLVRFWRHPVRAFFSL 851 Query: 790 ILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 L + F PD G + + + L+ I+ N + Sbjct: 852 RLGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGNEGDKL-----YTRQRAAGV 906 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ + +++ E ++++ G+ L+G Sbjct: 907 LPYGAFGELFWQEQEAEMSELAAQVREQRAAAE------NWEISLTLGGVTLSG 954 >gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] Length = 1157 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 87/843 (10%), Positives = 179/843 (21%), Gaps = 64/843 (7%) Query: 127 IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE-EKKWEDLHALKNEKYGMWWLLAA 185 + + L + A A L + I E + L AL + Sbjct: 319 LDEQARLGRLRERLKAARAQERTAALFTLAAEIHRRVEAQKARLGALDFDDLIH---KTL 375 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARL 245 D L W ++ V A + + AG R Sbjct: 376 DLLTRVDSAWVLYKLDRG-VDHVLIDEAQDTNPEQWEILRRITEDFCAGEGARRGPLPRT 434 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V + G + + + AK + Sbjct: 435 RFAVGDPKQSIYSFQGAAPEEFETTRQAWRRAARGAGLAFEDVGLTLSFRSAKGVLRGVD 494 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFL-PPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + + G + ++ + P V +EA Sbjct: 495 ATFALAEHYRGLSFGDGAIGTVHETVRVGAPGQVELWPTEEPCEEPEPDAWVQPVDAVEA 554 Query: 365 DNEREEAISIAIALRMSLDENKKK----------SALITADRNLARRVKLELTRFGINID 414 + L+ V L + + Sbjct: 555 GAPALVVARRVARAVRHWTREGDEHGRIWRPGEILILVRKRSAAFEGVIRALKAEDVPVA 614 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 + ++ + L + A +D + +A +K PL + A+ A E Sbjct: 615 GQDRLDIAAHIAVMDLVAAGRAALLPDDDLTLACALKTPLVGLTDDDLVRLAARRAPEES 674 Query: 475 ALRGNKNSYDIMDLKSLVLDR----IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 D +L + + + L A L+ + Sbjct: 675 LAAALARHAGAGDPAALRGAAALATWRRLAQESGPFGFYADLLGPLGGRARLVARLGGEA 734 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + T T + D G T+ Sbjct: 735 GDAIDVFLTAAAQAEQGADAPSLTGFLSRYAPSGGRDAG-----------GHTVKRDLES 783 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + + + ++ ++ L + + Sbjct: 784 ARDEVRVMTVHGAKGLEAGLLVLIDGCEPLGRNDPPLLPV--------PVRGAGGVADGT 835 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 VW + + + L+ + +++ + + + R + T Sbjct: 836 VPVWSPSKGHDCPAGAAAREALHERARQEHN---RLLYVAMTRAKDRLVIAPYRGRDRET 892 Query: 711 IASRWLQRLL----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQ 766 S GG + + + + P P + Sbjct: 893 PESWCEMVRRGLVAAFGGVERAEMPYGPAETWRHGAALPAAPATAVPPAPPGERPDWLFR 952 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P + L DP RG L H ++ L + Sbjct: 953 PVAPEAEPLPPLRPSGLGAADE----PRRSQPRSGDPAARRRGVLIHALLEHLPALAPER 1008 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 P + R L + + Sbjct: 1009 RAAAARA----------FVAARAPGLPAAEREALATSVLRLLADPDLSVLFGPLARAEVA 1058 Query: 887 AKMAIESIGIH--LTGFADRIDLLKSGFVDITDYKTGDNPK-KETAQKLIDPQLSLEAAA 943 + G+ + G DR+ + + V + D+KTG P + Q++L AA Sbjct: 1059 LAGTVSLGGVEWPVHGRIDRLAVTEE-AVWLCDFKTGRPPAEGAPVPGGMAAQVALYAAL 1117 Query: 944 LKA 946 L Sbjct: 1118 LAR 1120 >gi|170719946|ref|YP_001747634.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida W619] gi|169757949|gb|ACA71265.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida W619] Length = 1158 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 104/984 (10%), Positives = 236/984 (23%), Gaps = 106/984 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ + G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLADDQGGCGIAAAIEVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + +L + P VS + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRK--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194 LA+ LAD+ D + W L ++ A + ++ Sbjct: 137 GDLRKRYQLAERLADLFDQYQVYRADW--LKDWAAGQHVLNTARGERKPLAPGNRWQAEL 194 Query: 195 WTERLVELNASSPVGYQIALMRAEA------EHLMKGTKGPIIIAGSTGSIPATARLMST 248 W L ++ + + + E G +I+ G + ++ Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFTECINNLEQPPAGLPSRVIVFGISSLPAQALEALAG 254 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 +A + + H + I ++ + Q++ L Sbjct: 255 LARFSQVLLCVHNPCRHHWSDIVADKDLLRHQYKRQQRKQGMPVQLDDESLHQHAHPLLA 314 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDIL 345 + R+ + L + + + ++ T+ Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGAFSDGRIDLFSETEPATLLNQLQDDILELRPLTETR 374 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 E V A + + E + L + ++ + Sbjct: 375 ELWPEVDLAKDRSVRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDNYAP 434 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGRDPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494 Query: 454 ---LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS 510 + + N + L + + + Sbjct: 495 VRGRFGIRESDLPTLHRWIEGAGIRWGLNAEQRATLGLPEGLEQNSWRFGLRRMLLGYAV 554 Query: 511 RLSE-----EDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + E E + L I + L + + + W + LQ Sbjct: 555 GMGEGCDGIEPYDEIGGLDAALIGPLVALLDALDVANHVLSQPATAAQWGERLNALLQVF 614 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E L + + L + ++ ET + I + + Sbjct: 615 FLAEGEHDEFLLMQ--LQELRDSWLEVCETVGLQDLLPLTVIREAWLSGLDQGKLSQRFL 672 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 673 AGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 732 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDW 741 + + L + R +N AS + +L L Q Sbjct: 733 -LLEALLSARDQLYISWVGRSIRDNSERPASVLIGQLRDHLAAGWRLAGSGDSQQAGEQL 791 Query: 742 TRKLDYTTKQPH----------------------------YKRPKPFPPLEAQPRTYSFS 773 L K+ P + + Sbjct: 792 LHALTQEHPLQPFSPRYFQKGSALFSYAHEWQLLHQVGDEAKQSDVGLPPYSSNEALTLM 851 Query: 774 EIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 +++ + P + + LK+ + + D + L +E + Sbjct: 852 QLQDFLRHPVRHFFSQRLKVFFEALESPTPDEEPFVLDALQRYSASESLLGAALAEPENA 911 Query: 832 NHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA 890 ++ LP + + + L+ V + Sbjct: 912 EQALQAQARRLQACGMLPLAGFGELLQAELIQPLPDLLQRHR-HLLQRWPALVEGALPIH 970 Query: 891 IESIGIHLTGFADRIDLLKSGFVD 914 E G L G+ R+ + Sbjct: 971 FEHGGHRLEGWLGRVYQADDQSLL 994 >gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] Length = 1119 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 95/906 (10%), Positives = 207/906 (22%), Gaps = 114/906 (12%) Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L +E D + L + LA L + Sbjct: 251 LTAALEAGSANDQKAAAKLRLLSFSAPTTATLAGLEGVLLTGASAKEPYTAKIGSFPTKA 310 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + LA L ++ +E L A + + F + + R Sbjct: 311 TRGALGPLADRLEALMRRVEAARPVRCCLLAAERARLIH------AFAGVFLPLYEARKA 364 Query: 201 ELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN- 251 + + G I++ + + P +++ +A Sbjct: 365 ARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPDQWKVIELLAQE 424 Query: 252 -------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + D + + + + + LD L Sbjct: 425 FTAGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRAEFGERLAGAERRLEELDLLH 484 Query: 305 IKREDVKRLGNVSNEMYGRSM-------VISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 R L V R + P + F Sbjct: 485 SFRSSPTILRLVDLTFDERRRQDLGGEVRHIAFRSDMPGRAELWPLVEAATEPEPENWFD 544 Query: 358 DVALIE-ADNEREEAISIAIALRMSLDE--------------NKKKSALITADRNLARRV 402 V L+ + A +A +R ++E L+ ++ + Sbjct: 545 PVDLVSDEHHAARLARQVAARIRAMIEEGVQIPQPGGFRPVAAGDFLILVQRRSDIFGEI 604 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + I + + L L L++LL + D +++A +++ PL + E Sbjct: 605 IRACKEARLPIAGADRLKLGAELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEAEL 664 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + E R + +L + Q + R L Sbjct: 665 FDLAHGR--EGYLWRRLREREATHPETVAILRDLRDQADFLRPFDLIERALTRHDGRRRL 722 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + + + + W + + Sbjct: 723 LARLGEEAEDGIDELLSQALAYERT------------------DVPSLTGFLTWLQTDEV 764 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + + ++ + + + T + + D Sbjct: 765 EVKRQMEAAGGRIRVMTVHGSKGLE-----------------APIVILPDTADRKPREHD 807 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + VW ++P + + A + + +A + Sbjct: 808 EIFTLDCGARVWKTPAPESPPQIAAAREARRARDAAENLRL----LYVAMTRAQCWLIAA 863 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 A L R + + G L + + +P P Sbjct: 864 AAGKLESGGAWHDLIRQGMEAAGA---ERRADGTLLLVEGDWPAPAPRPAAPEAGRPALP 920 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 A+ + L+ A+ + RG+ H ++ L Sbjct: 921 GWARIHAAAPVAAPGLLLPSDLGGAKALPGEALPTEL-----ALARGSAVHRLLEHLPLH 975 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 L+ + D + + L E+ + + Sbjct: 976 PPETWDEVARGLLPDLGD----------------LGDVLEEVRAVLSAEDLGAALVPHAL 1019 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLE 940 + + + L G DR+ + V DYKT + E + I Q+ Sbjct: 1020 IEVQVTAEVAGR--RLFGTIDRLVVDPD-RVLAVDYKTNMVVPARPEEVPEGILRQMGAY 1076 Query: 941 AAALKA 946 A AL Sbjct: 1077 AEALAR 1082 >gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1] gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1] Length = 1167 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 89/890 (10%), Positives = 207/890 (23%), Gaps = 102/890 (11%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 P + S M ++ R + V T++A EL S Sbjct: 52 SPRLVIAGAGSGKTATMADRVVWLVANGWVRPE--------EVLGVTFTRKAAGELASRI 103 Query: 65 IEITGK--------------------KSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPV 103 + P + + L L + + Sbjct: 104 RSKLATLQRIAAADDGSIGFPEGLLEADDLEPKVSTYHSYASGIVSDYGLRLGIERDVVL 163 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPE---SPLSLPISPANAIWLAKNLADI-IDII 159 + +LA ++ + + + L A + + D ++ + Sbjct: 164 LGGAQSWQLASEVVEAYDGEYQHFTAAKSTLVTAVIQLAGECAEHLQDPGEVRDWVLERV 223 Query: 160 ET-EEKKWEDLHALKNEKYGMWWLLAADFLKIASK---YWTERLVELNASSPVGYQIALM 215 +T EE + + + + E + Sbjct: 224 QTFEELPYVAGAKKNPTQAAGELAAMLRTRGSVADMVVRYQEAKRQRGVLDFGDLVALAA 283 Query: 216 RA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 R A + +++ + A L S + G V D + Sbjct: 284 RIASDIPLAATTERARYKVVLLDEFQDTSHAQLVLFSRLFG--QGHAVTAVGDPNQSIYG 341 Query: 271 WNTITEKSTNITSSNTTYS-----THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + + +L + + + +N + Sbjct: 342 FRGASAGQLFHFVQEFPVRHADHSGDNESYSVAPTSYLTTAWRNGRNILQAANTIAAPLN 401 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 + S P + +P+ V + + +EA +IA +R Sbjct: 402 RAAASEGPAGDRKTAGNVSVPALVPSPAAVDGSVVIGRFGTDEDEATAIARDVRRYQRTV 461 Query: 386 KK----------KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + A++ R ++ E GI +I L T L + L Sbjct: 462 FEEEKDGTPVKPTMAVLCRRRAQMECLRREFELQGIPYEIVGLGGLLDTPEIVDLVATLR 521 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVL-- 493 + A+ L+ + G + + + + D Sbjct: 522 VLADPGRSDALMRLLAGARWRIGPADLMAFSDWSRFLARRRSAPEAHPESFDDNEEPAGV 581 Query: 494 ------DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 A+ S + L+ +D + + L + ++ Sbjct: 582 VVESDITDAASLVEALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLTT 641 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 L + + + + ++ + + ++ F + + + + W++ Sbjct: 642 L-LGEVERAMLLDIEVAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAF--LSWLE 698 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP----- 662 G V P + +L S+ L +D + + GLN G +P N Sbjct: 699 AAASEEGGLDVAPVETNREAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAA 758 Query: 663 FLSRVMQSDLNLKTAEK------------------------YIGQAAHDFEMANGTRHLI 698 L ++ D + + + ++ Sbjct: 759 ALPWPLRGDRADLPQWDLDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVL 818 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + S N + + L L ++ + + P+ Sbjct: 819 WASSAAWNGSRSGMAGMSAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPE 878 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P A + P L+L D Sbjct: 879 ESPLTAALEVAQFP---YDPLEGPSDPRTGARLRLTPGRRSAMDRAAALV 925 Score = 78.8 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 79/621 (12%), Positives = 158/621 (25%), Gaps = 50/621 (8%) Query: 390 ALITADRNLARRVKLELTRFGINIDISA-GIPLST------TLHSSILTSLLNAIFKLND 442 ++ +D A + L S G LS T +S L SL + I Sbjct: 581 VVVESDITDAASLVEALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLT 640 Query: 443 F----MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + A L+ +A + +R A G + +DL + + A Sbjct: 641 TLLGEVERAMLLDIEVAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAFLSWLEAA 700 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDH-ILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + + E +L + + + + + + S Sbjct: 701 ASEEGGLDVAPVETNREAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAAL 760 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR-LIDGE 616 L+ D + + ++ F ++ + + ++ + Sbjct: 761 PWPLRGDRADLPQWDLDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWA 820 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + S + + S L + + V + L ++ Sbjct: 821 SSAAWNGSRSGMAGMSAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPEES 880 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + A T + + R L + Sbjct: 881 PLTAALEVAQFPYDPLEGPSDPRTGARLRLTPGRR--SAMDRAAALVRGYIEEPGHAPSN 938 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT-YSFSEIKQLINDPYAVYARRILKLDF 795 K + ++ + + + S S L DP A + +L Sbjct: 939 DLTGVAGKWSQEAELLLDRQRQAKTVQDVHLPSHISASLFVDLGADP----AAVLSQLRR 994 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + GT FH + E + E I Sbjct: 995 PVPREPGISARK-GTAFHAWVEEYFGTTGMLDLDEA----------------PGSDSHID 1037 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 + +F + E ++ FV +P + I + + G D + G + Sbjct: 1038 EAYGLDDTVAAFKKSEWAQRA---PAFVEVPVETRI--GDVVVRGRIDAVFRDADGRWQL 1092 Query: 916 TDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 D+KTG P + + QL++ A + V+ FY D + Sbjct: 1093 IDWKTGRRPAGQQL-AIRAVQLAVYRLAWAR--LKDVPLEDVSAAFYY-----VADDAVV 1144 Query: 976 NDKKKYSADELSEKSLKNLIE 996 SA+EL K L Sbjct: 1145 RPHDLGSAEELELIVAKALKS 1165 >gi|229149252|ref|ZP_04277491.1| UvrD/REP helicase [Bacillus cereus m1550] gi|228634224|gb|EEK90814.1| UvrD/REP helicase [Bacillus cereus m1550] Length = 957 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 112/1041 (10%), Positives = 274/1041 (26%), Gaps = 144/1041 (13%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 P S ++ ++ + + P ++ + T++A EL + ++ Sbjct: 28 PGSGKTYTLVE-----RILYLIEHKQVEPE---NILVATFTEKAANELVTRISNKL-HEA 78 Query: 73 TI---LPIIK--SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDII 127 I L + ++ + L N + +++ L + Sbjct: 79 NIKFNLNEMYVGTIHSLC--------LRILEENREYTRLKKNYILMDQFDQQYMLYQKLS 130 Query: 128 KDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF 187 + L + S+ + ++ L I+ + E ++ L + Sbjct: 131 RFLELDEIESVLNFNTSRWKQSQELLKWINKLSEEIVD---INKLIDSDEAR-----LRV 182 Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPAT 242 L K + + L+E NA Q+ H ++I + Sbjct: 183 LGKCYKVYEQLLIEENALDFSTIQLETYNLLQNHEDVRNNLNAKLHYLMIDEFQDTNTIQ 242 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 +L+ +A V+ D + T ++ N Q L+ Sbjct: 243 EKLVFLLAGKQQNICVV--GDDDQGLYRFRGATIRNILEFPQNFPKGICQQVELSTNYRS 300 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + + ++ + + + + + D Sbjct: 301 NPAIVQFYNQW--MEQNNWSQNGTTYRFDKKITAHESNKVNQKTVVKVSGEDGLDDW--- 355 Query: 363 EADNEREEA-ISIAIALRMSLDENKKKSALITADRNLARRV--KLELTRFGINIDISAGI 419 E + + + + + A + +R + L GI + Sbjct: 356 -----ESEVYLFLQAMKKEGGISDWNQVAFLFRSVKNSRVLNLSRYLEERGILVYSPRSN 410 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 + +L +F + + Sbjct: 411 LFFERREIRL--ALGAILFLFPMYAQLRKWNDSAFLPEWEFYDACLL--------EFAEE 460 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + DL ++ T + L D L Sbjct: 461 LRKPENHDLLRWCKEKARTHMTLNKNLDYAFSGLFYQFIQFELFSDL-------LSDNVF 513 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKIIETGSCI 598 + ++S ++KL E+ +++ + G ++ F++ I Sbjct: 514 TVKDSREVRNLSQFSKLLTKF-------EYLHHISVFTQRNIGDSVVRFFNQYIRF---- 562 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 ++ ID + S + L +S+ L F +I+G L + T Sbjct: 563 ---------LLQGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPVVIVGSLESTPRKQYT 613 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHLIYT----RSLRENNIPTIA 712 + L + E+ + + ++L+ I Sbjct: 614 DIDELLQTDFYQKPPFEPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVANGAGTRNIP 673 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S++ Y D D T + + + +++ Sbjct: 674 SKYFTE------------------SYRDLKSWRDEPTIYN-IELAQVKDVNIKREYSFT- 713 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNTPEI 831 S I + L + T GTL H I ++ K N+ Sbjct: 714 SHINLFETCSLQYKFYKELGFAPVRQ-----GATIFGTLVHQTIEDIHKSALKNEAYLIT 768 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ ++++ + + + + EK I +++ Sbjct: 769 EANIEDWFNTNYRHLSKRERVY-LAPQTQEAALKQVKSYVEKQYGDWSHIQ-EAEVDVSL 826 Query: 892 ESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPK-KETAQKLID--PQLSLEAAALKAG 947 L G D + G V+I D+K+ P + L QL + A ++ Sbjct: 827 VKDKYILKGTIDLV--KGDGDTVEIVDFKSEKKPDLVKEQDALYRYKRQLEVYAHLVEER 884 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQP 1007 + ++ L+Y + + +K S + +++K+ IV +++ + Sbjct: 885 TNYKVSKMH---LYY---TGEKDSNPYVTFEKDTS---VINQTIKSFDRIVDRIESHD-- 933 Query: 1008 FISHLRLSE-----KSNIQSE 1023 + R + + Sbjct: 934 YTIKQRPKKHCGNCDMRFYCD 954 >gi|330009179|ref|ZP_08306463.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. MS 92-3] gi|328534898|gb|EGF61435.1| exodeoxyribonuclease V, gamma subunit [Klebsiella sp. MS 92-3] Length = 1125 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 102/974 (10%), Positives = 242/974 (24%), Gaps = 123/974 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQDVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRYELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 +++ + ++ + R ++ + ++ Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQA----------QS 940 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G++LTG Sbjct: 941 MEIDLQCGGVNLTG 954 >gi|310766600|gb|ADP11550.1| exonuclease V subunit gamma [Erwinia sp. Ejp617] Length = 1122 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 96/954 (10%), Positives = 234/954 (24%), Gaps = 122/954 (12%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L S + V + Q L+ E + ++ + + + Sbjct: 28 DPLRSEVVLVQSPGMAQWLQMSLAEEFKIAA----------NIDFPLPASFIWDMFVRVL 77 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158 P + + + LP ++ LS LA +AD+ D Sbjct: 78 PEIPKESAFNKSSMSWKLMAILPGMLPGEAFTMLRHYLSDDDDKRKLFQLASRVADLFDQ 137 Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 +W + + + L A +T RL + + Sbjct: 138 YLVYRPQWLNGWEKGQLTEGLGDAQIWQAPLWAALVEYTRRLGQPEW-HRANLYRRFISR 196 Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I G + P + + + H ++ H I + Sbjct: 197 LENSSTRPPNLPDRVFICGISALPPVYLQALQALGKHIEIYLLFTNPCRHYWADIQDYAF 256 Query: 276 EKSTNITSSNTTYSTHP--------------------QYSLAKLLDFLDIKREDVKRLGN 315 P Q S L + + R+++ L + Sbjct: 257 LAKLQSRHRRHYQDNRPIPQFRDADNASSLFNDAGEQQLSNPLLASWGKLGRDNLYLLAD 316 Query: 316 VSNE-------------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 + + + + + + + + V + Sbjct: 317 MEPDEVFAFVDIEPINLLQTLKRDLLELEDHAVIGLLESEWENSRSKRVLNADDRSVEIH 376 Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413 + + E + L + ++ + ++ AD + + + Sbjct: 377 LCHSPQREVEVLQDRLLAMMADDPKLTARDIIVMVADIDAYTPFIQAVFGNAPADRAVPF 436 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471 IS SLL+ + L++ P +F E+ LS ++ + Sbjct: 437 AISDRRASQAHPALQAFISLLSLPDSRFTAEEVLALLEVPAVASRFAIDEEGLSLLRHWV 496 Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +R + + +L + + + L+ Sbjct: 497 AESGVRWGLDDDSVRELDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556 Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + L+ + + W L L + + L E + Sbjct: 557 AELAGNLAELLMQLNRWQQWLSEPRELDSWLPLCRRMLDDFFNSDAETDAALALIE--EQ 614 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + ++ G D ++ +D + + + + + R + F Sbjct: 615 WQQAINYGVQAGYRQAVPLTLLRDELSSRLDQQRISQRFLAGP-VNFCTLMPMRSIPFKV 673 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRS 702 + L G+N+GV+P+ F +M L + E N + L + Sbjct: 674 VCLLGMNDGVYPRTLPPLGF--DLMSQQLQKGDRSRRDDDRYLFLEALNSAQQQLYISYI 731 Query: 703 LRE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQ 736 R +N S + L+ + + Sbjct: 732 ARSIQDNTERFPSVLVSELVEYISQSFCLAEDSARDVDSSAEAVVKHLHHLHSRMPFAAE 791 Query: 737 CYLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFS-----EIKQLINDPYAVYARR 789 + + + + PP S + ++ + P + Sbjct: 792 NFSPQAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIGFDKLVRFWRHPVRAFFSL 851 Query: 790 ILKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 L + F PD G + + + L+ I+ N + Sbjct: 852 RLGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGNEGDKL-----YTRQRAAGV 906 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ + +++ E ++++ G+ L+G Sbjct: 907 LPYGAFGELFWQEQEAEMSELAAQVREQRAAAE------NWEISLTLGGVTLSG 954 >gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822] gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis] Length = 1134 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 78/712 (10%), Positives = 167/712 (23%), Gaps = 48/712 (6%) Query: 228 GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 ++I + L++T+ +G + D + + Sbjct: 404 RHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAE 463 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 P +L D + V + V ++ R+ + S + Sbjct: 464 QGVGQIRP--GFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETA 521 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKL 404 + A + + + A + ++ A++ R+ + Sbjct: 522 PGEAVRFHPAWECGDAASAERQAEDIVVGLVRAALAEHEGSRHPVAILVRARSHLGSLTR 581 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L + GI +PL + L L A+ D +A ++++ P Sbjct: 582 RLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQR 641 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + V L+ + + L Sbjct: 642 LFGADQQTPVPT--------------LLERALRGAARSEGGQGSLFDAPAPGCLAEQALA 687 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + ++ + G L ++ W + L P + ++L Sbjct: 688 PDEYRRLRAVAAILLDRANDAGLLPLAAWLEQLWRRL-----GGPGLYPGSSAASDAESL 742 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L ++ G + + + T+ I+ +S+ L FDT+ Sbjct: 743 FQLIERLAPHGGLDAGLLDTAVARLFAA------PQATGEQGTVEIMTMHKSKGLQFDTV 796 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ--------AAHDFEMANGTRH 696 IL GL+ F + L A A T Sbjct: 797 ILYGLHRAPRGDQAPLVRFEQSGGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDR 856 Query: 697 LIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 L+Y + R + L D Sbjct: 857 LLYVAATRARQRLHLVAHVAVDAASGQARTPASASLLGRLWLHLPVPQPPDVAQDQAAAT 916 Query: 752 PHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 P + + L + A + + GTL Sbjct: 917 GEQPALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTL 976 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H + + + + + + + +P S L+ E Sbjct: 977 AHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDE 1036 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN 923 + + + ++ D + G I DYKTG Sbjct: 1037 RGRWLLGQARA---RREWPLIDAAGRVS-VIDLALSTEDG-WLIVDYKTGRP 1083 >gi|319788630|ref|YP_004148105.1| exodeoxyribonuclease V subunit gamma [Pseudoxanthomonas suwonensis 11-1] gi|317467142|gb|ADV28874.1| exodeoxyribonuclease V, gamma subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1140 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 99/952 (10%), Positives = 231/952 (24%), Gaps = 89/952 (9%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L G L + R LLA + +P + L++ G + I + G+ Sbjct: 22 ILAGILAQVLRQPAPGQSLLAPEVVLIPQVAMRRWLQATLAAEHGVAANI--EFLTPGEF 79 Query: 85 VEEKFTADLLLSYNLN-PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 V A+L + + + L ++ + + P Sbjct: 80 VGRALAANLPAPRDEQGRKLDELDVETLHWHLYAALTDRALLAQPAMQRIAAHVGGDDPL 139 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-EL 202 A LA LA++ + + + W L ++ W Sbjct: 140 RAWSLAGELANVFNKYQAWRRDW--LLRWEDGAGPDDPQAIL---------WRRVARGRP 188 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + + + + L +G + + P R+++T A + + +P Sbjct: 189 HRARRIQQYLERFDRIDGELPRGLPTRLSAFATLNVSPDVLRVIATQARVGSLHLFVPSP 248 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--LAKLLDFLDIKREDVKRLGNVSNEM 320 + ++ N L+ ++ + + Sbjct: 249 VADYWGDLQRLRRGETAQEAGENLLLQRWGAAGADFMHLVGSYELVHASAEFNVHADPAE 308 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 G ++ S R + + L E +A LR Sbjct: 309 GGGALQGSLLRRLQADVYHRRASPGAPLRATVALDDPSLQLHACHTRLRELQVLADQLRA 368 Query: 381 SLDE-------NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSS 428 D+ ++ A++ D + + I ++ PL+ + Sbjct: 369 LFDDPRFDPPLQPREVAVLAPDIDPYLPYLEPVFGRRGDPDAIPYALADTSPLANEPLAG 428 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHP--------------LAKFGFPEKYLSRAKNALELV 474 + LL + L+ P + +A Sbjct: 429 VFLRLLALPVSRFGLHEVLDLLASPAVAEANELDAPALERLRSWLSAAGARWGIDAAHRA 488 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 L ++ L ++ V ++ EL +D + + L Sbjct: 489 RLDAPEDDAYTWSFALDRLLLGHASGSDEPVLLDDGQVVAPMPELEGSAIDALDTLVRLL 548 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 ++ G L+ + W + + L ++ + ++L F++ + Sbjct: 549 RVLALHERVLGGALAPAQWRERLLQLLVSLLPKPPSDPKTQRALDRLRSLVDAFAQTAKD 608 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN--EG 652 E + + E + + I + RLL F + + G+N E Sbjct: 609 AGYEAPVPSEAVRAHFAAMLSEADTRAPLLTGGVSIGRMVPMRLLPFRAICVLGMNDGEF 668 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL----RENNI 708 A L+ + + F ++ S + Sbjct: 669 PRRDPAAGLNRLTAELGTPDRRHGDRSTREDDRFLFLQLMAAAQDVFYVSWIGRDPRDGS 728 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--RKLDYTTKQPHYKRPKPFPPLEAQ 766 S + LL L + +P + Sbjct: 729 EREPSVLVSELLEAAAAQHEHPPGDTSPVTRALVVEHPLQPFSPDAFGSDGEPRRFSYRR 788 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP---------------DRTDRGTL 811 + ++ + + + L + Sbjct: 789 DWREAAAQPSAQRSPLAPWFNGQALPAPPPADEPVGAIPVLPLEALRRFLLNPAREFLNR 848 Query: 812 FHNIITEL------IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL------ 859 + E+ ++ P L+++ + + + P + R Sbjct: 849 VRVRLPEVESHGEDLEPLAAPAEPLERTLLQRAVFESLLRGDDAPTTHALLRARGLLPSG 908 Query: 860 ------FHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFAD 903 + + S L + +S + I+ G L G D Sbjct: 909 ASGRSVLERQARSLLPW-REAFASWRGTDEPQSRVFEATIDGTG--LRGQVD 957 >gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] Length = 1161 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 88/830 (10%), Positives = 184/830 (22%), Gaps = 105/830 (12%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TK 227 A + + W Sbjct: 335 DLADLLETALGVGRRFALAWDAAKTREGFIDFDDQIRTAAELLTRRTTAEWIRFKLDRRF 394 Query: 228 GPIIIAGSTGSIPATARLMSTV----------ANHPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + + +++ P + D + + + Sbjct: 395 DHILVDEAQDTNASQWQIVLEGLVSDFFTGEGQRGPAVRTLFVVGDYKQAIFGFQGTSPE 454 Query: 278 STNITSSNTTYSTHPQYSLAK------LLDFLDIKREDVKRLGNVSNEMYGR-------- 323 + S ++ + L L + + GR Sbjct: 455 NFARASIRVKEQLAEVSAILRDPERELLELGLGQSFRTAAPILGFVDAAIGRIGWDRFGL 514 Query: 324 ----SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 D + + + +RE A IA +R Sbjct: 515 SQMPEQHKGLPIPGTVGLWRVVGDDAGEPGEDGEDTDEGEEGWLSRPDRELADRIARQVR 574 Query: 380 MSLD--------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 +D L+ + LA + L G+ + + L L Sbjct: 575 AWIDVGFPLGKGDTPRLANAGDVMILVRKRKELAGLIVARLHARGVPVAGVDRLRLGAPL 634 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L + L + D + +A L+ PL + + + E + +N Sbjct: 635 AVKDLVAALRFAAQPLDDLNLAGLLVSPLIGWSQEDLLERGYRPHGERLWEWLRRNEGPE 694 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 L + + + L + LV + + N Sbjct: 695 TFEMMERLRALLARADFDPPQVLLHWLLVGPWDGRRKLVARLGGEANDPIDELLNAAMAY 754 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + ++ WF+ L K + + + Sbjct: 755 ASANVPSLVGFLQ-----------------WFDAGEGELKREAGKSDGLVRVMTVHGSKG 797 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 + ++ P + L I+ + G V K Sbjct: 798 LQAPIVILADAADDPDLSPPRGLEIVED------------VMGARRKVPLPPLRKEEKAP 845 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIASRWLQRLL 720 V++++ K A + + ++ R + W +L Sbjct: 846 AVIEAEAEAKRA-EREEHWRLLYVAMTRAEEALFIAGAKGKVRRTSGGELPVDSWYAQLE 904 Query: 721 VLGGTDFFD--NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L G ++ L + + + P + P + L Sbjct: 905 PLFGDGEWEVDPLWGGRKTIGRPQDFVGRPAQADVSPVRAALPQVLLTPVGAEPRPPRPL 964 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 RGTL H +I L + + + Sbjct: 965 APSSLG---EDEASEPPTHPGPGAMIAARRGTLLHRLIERLPEVSPASREASGMAWLARA 1021 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 D R + + + L H E +P + + Sbjct: 1022 G----------SDFDEAERSAMVRSALAVLNHPEWSDVFGPDSLAEVPLAAVVAGR--VV 1069 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKA 946 +G DR+ + + V I D+KT P Q++ AAL+A Sbjct: 1070 SGTVDRLVIGRE-RVRIVDFKTARRPPASFTEVPAAYVRQMAAYVAALEA 1118 >gi|251793052|ref|YP_003007778.1| exodeoxyribonuclease V subunit gamma [Aggregatibacter aphrophilus NJ8700] gi|247534445|gb|ACS97691.1| exodeoxyribonuclease V, gamma subunit [Aggregatibacter aphrophilus NJ8700] Length = 1125 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 100/961 (10%), Positives = 230/961 (23%), Gaps = 119/961 (12%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L S + V + Q L+ + E G + + + AD L + + Sbjct: 29 SLQSEIVLVQSPGMAQWLQLQIAEQKGIAANFA---FPMPASFIWQLYADNLPDVSQSNQ 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + L RLI + + L S LA +AD+ D Sbjct: 86 FNKNAMMWRLIRLIPAYL--HQPDFQPLRHYLAHSAQSEQFKLYQLAGKIADLFDQYLVY 143 Query: 163 EKKW-------------EDLHALKNEKYGMWWLLAADFLKI---ASKYWTERLVELNASS 206 W + + + + + + + + Sbjct: 144 RPDWISAWEEHRDVEICQQIESQLSVDNDRLLAQIQQNIAWQGVLWRALVQMVKTDTGLD 203 Query: 207 PVGYQIALMRAEAEHLMKGT----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 V ++ L R E L + + I G A + ++ + + + Sbjct: 204 LVQHRAHLHRLLLEKLRENRPLFLPERLFIFGIPALPKAYLEIFQAISQYCDVHLFFNNP 263 Query: 263 DCHIPTAI-----------WNTITEKSTNITSSNTT--------------YSTHPQYSLA 297 I ++ + Q Sbjct: 264 CEEYWGDIVDPTFIEKLALRRRTDYRNQQEKPLLSAEQVELVQQQWDVTYDQEKLQVGNP 323 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-NIQKCF 356 L + + R+ L + + + I+ L + P N + Sbjct: 324 LLASWGKLGRDFSYLLTQLEPQEISAYVEIAPRNLLSQLHHQILHLMPSGTEPLNYVEND 383 Query: 357 SDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL------ 406 + + E ++ L + K ++ AD + + Sbjct: 384 RSLTFHSCHSVMREVETLQNYLLHLFQTEPNLTPKDIIVMVADIDKYTPYIQAIFGQNSV 443 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 I IS + + +LL + + P + F L Sbjct: 444 PNSAIPFSISDNKLSENDVLIAGFLALLQLKESTFSAEDVLAFLDIPAIRERFA-IELQD 502 Query: 467 AKNALELVALRGNKNSYDIMDLKS-----LVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + V G + + + + Sbjct: 503 LAQIRDWVKNAGVRFGLEKNADGETNYNSWQAGLERMLLGYALREENGIWQDSLGLDNSF 562 Query: 522 LLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L ++ + + + + +I W + + L++ ++ Sbjct: 563 GLKGQLVGRLSEFIERLFAWYQTLQHSFNIMQWQQHLTALADDFFAVTTETNETLFYIKD 622 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + ++ + D++ ++ + + L R + Sbjct: 623 --VIQQFAEQLQDVHFEQPLVIDVVADVMNSALEENPNHYRFLAG-KVNFCTLLPMRSIP 679 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699 F + L G+N+ +P+ N F + E + L Sbjct: 680 FKVVCLLGMNDDEYPRQQQANSFDLMQYHRIKGDRARRDDDRY--LFLEALLSAQEYLYI 737 Query: 700 TRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT--------------R 743 + R +N S + +LL +NL + Sbjct: 738 SYIGRSISDNQEREPSVLVSQLLDY----IVENLPDEDNDWRALLVQQHGMTAFSRKNFE 793 Query: 744 KLDYTTKQPHYKRPKPFP-----------------PLEAQPRTYSFSEIKQLINDPYAVY 786 K D T Q ++ P R FS + + +P + Sbjct: 794 KNDRTFSQSFAQQWLPLANSQAGRILQDFIQPMDFDAWEDERDIEFSRLVAFVKNPVKFF 853 Query: 787 ARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL--IKKRINKNTPEINHLMKQIIDSHFE 844 R L ++F + D + N + + + + + + N + Sbjct: 854 FERRLGVNFSEQEESIADSENF--ALDNALEKYAIHAELVEFDGDQTNAFF---ARQKVK 908 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 ++ + +++F E + S + ++ I L G DR Sbjct: 909 GVLPRGEFATLYANQLLAETNAFKEKIDDYVSQTPHSLF-AQLAVPTKNGEITLAGNVDR 967 Query: 905 I 905 + Sbjct: 968 L 968 >gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] Length = 1112 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 77/811 (9%), Positives = 189/811 (23%), Gaps = 107/811 (13%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHLMKGTKG----PIIIA 233 + F + + + + L + I++ Sbjct: 326 QVLYGFARRFITAYDAAKLHRGLLDFDDLITKTRDLLTDPAVAEWVLFRLDGGIDHILVD 385 Query: 234 GSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + + P +++S +A V D + ++ + Sbjct: 386 EAQDTSPTQWQVISQLAQELTSGAGSRSDRPRTVFVVGDKKQSIYSFQGADPRAFDEMRD 445 Query: 285 NTTYSTHP----------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++S LD+ G R + + Sbjct: 446 LFDERLAHSNAPLASRVLEHSFRSSSAVLDVVDATFDGAGEAGFSADQRHIAFHDALPGR 505 Query: 335 DTSDMRNTDILENKIPNIQ-----KCFSDVALIEADNEREEAISIAIALR---------- 379 + P + +D A++ A E A I +R Sbjct: 506 VDLWPPLDKPERPEDPPWYMPVDIRAENDPAVLLA---EEIAAQIDQMVRTRQPIPDGKG 562 Query: 380 -MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 ++ + + R + V G+ + + + L L + +LL+ + Sbjct: 563 WRAVTPGDVLILVQSRTRPIFNEVIHACKARGLPVAGADRLRLGGELAVRDICALLSFLA 622 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 D +++AT ++ PL + + + + ++ + +L + Sbjct: 623 TPEDDLSLATALRSPLFGWSEQDLFALAQPRG-GKYLWQALRDRAEAYPDTLAILTDLRD 681 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 Q + R+ A LL + + + Sbjct: 682 QTDFLRPYDLIERVLTRHDGRARLLSRLGHEAEDGIDALLAQSLAFER------------ 729 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + +W E++ + + + + + ++ ++ T Sbjct: 730 ------AAVDSLTGFLVWMEQDDLEIKRQLDSAGDLIRVMTVHGAKGLEAPVVILPDTTK 783 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + +S L R L + L+ + Sbjct: 784 RRPPQGASLLASPEAAFWRPLAAEL----------------------PAALRTLDSDKKD 821 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + +A + + S Q + D + GQ Sbjct: 822 AERAERDRLLYVAMTRAEKWLIVAAAGDTGTDRDSWHSQIAEGMTRVGGSDAMFPTGQGL 881 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + D+ P P + L + P K Sbjct: 882 R--VERGDWGATVPDMAAESAPVPAPLAAHFAQPAPRGTLPSAPLTPSDLPGPKALAGEA 939 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 + G L H ++ L + + L + Sbjct: 940 GRDTDTALREGRLLHALLEHLPALDPSDHPRLAADLARA---EEMPDATPWLS------- 989 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG-IHLTGFADRIDLLKSGFVDITD 917 ++ + + + + Q +P + +G G DR+ + + + D Sbjct: 990 ----LATALIANPDLGQIFGPDTLAEVPLSATLPELGNRRFHGIIDRLRIAPDHVLAV-D 1044 Query: 918 YKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 +K+ E I Q+ A L Sbjct: 1045 FKSNQVIPATPEATPLGILRQMGAYRAMLSR 1075 >gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2] gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2] Length = 1230 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 89/841 (10%), Positives = 218/841 (25%), Gaps = 128/841 (15%) Query: 213 ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 + +EA + +++ + ++ VA + + D + Sbjct: 387 EAVPSEAAKFYRHQFHEVLVDEYQDTNLVQEAILKLVAKEEHEGNLFMVGDVKQSIYRFR 446 Query: 273 TITEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVS------NE 319 T D LD K+L +E Sbjct: 447 LAEPLLFLSKYKRFTDDGSGSGQKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDE 506 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + S +++ + + V L EA ++A +R Sbjct: 507 QAELKLGASYPPNEATKTELLLIETPSGAPGEEAEELEAVQL--------EARAMAGQIR 558 Query: 380 MSLDE---------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 + E + ++ A ++ E + GI + + Sbjct: 559 RLITEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFKQQGIPVYANLSTGYFEA 618 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 S+ SLL I + +A++++ P+ E L R K+ Sbjct: 619 TEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENELSLIRIKDKKAPFYEAMKAYLAA 678 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 + L ++ + + W++ + + + + + K Sbjct: 679 ADGDERLSEKL---RRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQ 735 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ D + R + + + + S+ + + ++ + Sbjct: 736 ANLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 795 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF----------------------- 641 ++ G + + ++L F Sbjct: 796 GLEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRR 855 Query: 642 ---------DTLILGGLNEGVWPKNTAKNP--FLSRVMQSDLN----LKTAEKYIGQAAH 686 + L E ++ TAK+ L+ L E++ ++ Sbjct: 856 ELLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYL 915 Query: 687 DFE--MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 DF R + + + + Q + + + + G+ D + Sbjct: 916 DFIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQ 975 Query: 745 LDYTTKQPHYKRPK-----------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 + + P+ S SE+K+ R +++ Sbjct: 976 IQMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRP 1035 Query: 794 --------DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 K +RGT H ++ + E++ L+ ++++ Sbjct: 1036 SQEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLT-RTPEKNELSRLLDRLVEKELLT 1094 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAI-----------ES 893 E+ I+ +F + E + ++ +P M + Sbjct: 1095 EDQRAAIE-------EDDILAFFDTEIGQKLLGARRVEREVPFNMTLSAKEVYPDLESAD 1147 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETAQKL-----IDPQLSLEAAAL 944 + + G D + + G + DYKT G + + Q+ L A A+ Sbjct: 1148 EPVLIQGIIDCLFETEDG-FYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAV 1206 Query: 945 K 945 + Sbjct: 1207 E 1207 >gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5] gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5] Length = 1232 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 102/837 (12%), Positives = 218/837 (26%), Gaps = 122/837 (14%) Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITE 276 EA + +++ + ++ V + P + D + Sbjct: 392 EAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEP 451 Query: 277 KSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 T S D LD K+L ++ Sbjct: 452 LLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAE 510 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--------- 380 L D T+ I N + + E + + EA +IA +R Sbjct: 511 LKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVY 570 Query: 381 ------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + + ++ A ++ EL GI + + + ++ S+L Sbjct: 571 DGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVL 630 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 I + +A++++ P+ E L R +N L Sbjct: 631 KVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQK 690 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 H+ W++ + V + + + K + D Sbjct: 691 LNTFYG---HLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRA 747 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + R + + + + S+ + + ++ + ++ Sbjct: 748 RQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAA 807 Query: 615 GETVKPKIEK------------------SSTLFILGT--------------LESRLLNFD 642 G + L I L S L Sbjct: 808 GLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVL 867 Query: 643 TLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L E ++ + K+ + + Q+D L ++Y + DF RH Sbjct: 868 YVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARH 927 Query: 697 L---IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP- 752 +I +R+ ++ + D+L++R + + + P Sbjct: 928 RDLEDLAGVPAHADISDHPARFAVQM-IHSHDLLDDDLEERMEEKSERLEAIRRGEPVPG 986 Query: 753 ----------HYKRPKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLD 794 P + S SEIK+ P IL Sbjct: 987 SFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILFRR 1046 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 KK ++GT H ++ + + + E + ++ + E ID Sbjct: 1047 PAFMMKKGLTAAEKGTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID- 1104 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFAD 903 +I F + IP +A+ + + G D Sbjct: 1105 -----IEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQGIID 1159 Query: 904 RIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948 + + G + + DYK+ G P + + Q+ L A++ + Sbjct: 1160 CLYETEDG-LYLLDYKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212 >gi|164687185|ref|ZP_02211213.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM 16795] gi|164603609|gb|EDQ97074.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM 16795] Length = 1151 Score = 101 bits (252), Expect = 6e-19, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 29/256 (11%) Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 + S S +++ + P+A + + LK + D GT HNI+ E K Sbjct: 774 ETHNLSVSRLEKYSSCPFAYFIQYGLKAQERK--EYTFAAPDLGTFIHNIMYEFSKSLEK 831 Query: 826 KNTPEIN-----------HLMKQIIDSHFEKENLPPHIDIIWRHLFHKIS--HSFLEHEE 872 ++ +I + K+ + + Sbjct: 832 DGLHWSQINDAYIEKKVVSIVDAMISQIPGFILNSSPRYKYLSYRLKKMLMAAINIIAIQ 891 Query: 873 KIQSSIEKIFVNIPA---------KMAIESIG-IHLTGFADRIDL---LKSGFVDITDYK 919 E I + ++ +E I+L G DRID ++ I DYK Sbjct: 892 IKSGEFEPIDYEVNFGQTGKYPPIRIVLEDGTQINLIGQIDRIDEFDENDDRYIRIIDYK 951 Query: 920 TG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 + N + QL + A+ + + + A + Y ++ ++ Sbjct: 952 SSDKNINLTEVYYGLQLQLLVYLDAILESAMKKGNSIYPAAILYCKIDNPIAKFNENKEE 1011 Query: 979 KKYSADELSEKSLKNL 994 ++ + L + +K L Sbjct: 1012 EQIDEEILKQSKMKGL 1027 >gi|268590559|ref|ZP_06124780.1| exodeoxyribonuclease V, gamma subunit [Providencia rettgeri DSM 1131] gi|291313946|gb|EFE54399.1| exodeoxyribonuclease V, gamma subunit [Providencia rettgeri DSM 1131] Length = 1124 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 88/771 (11%), Positives = 194/771 (25%), Gaps = 101/771 (13%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ L+ + P I V + Q L+ E + G + I Sbjct: 11 DLLKDLMTHLMKNEPLSHPFEQE-----IILVQSPGMSQWLQIELAKQFGIAANIS---Y 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L + +L ++ N+ L Sbjct: 63 PLPATFIWDMFRRVLPDIPKESAYTKQAMTWKLMTILPTVINEEEFEPLK----HYLQED 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWL-LAADFLKIA 191 LA +AD+ D +W E + L + W L Sbjct: 119 TDKRKLHQLAGRIADLFDQYLVYRPQWVGVWQKNELIEGLSENQL---WQKRLWQCLVEY 175 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARL 245 S + P ++ L + + L I I G + P + Sbjct: 176 SNELKQ---------PPWHRANLYQHFIDTLSLNPDLGKLLPKRIFICGISSLPPVYLQA 226 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK------- 298 ++ +A H + ++ + I + H Sbjct: 227 INAIAEHTDVHLMFTNPCRYYWGDIQSASFLARLQQRKLRHYLDKHEISRFKLEEHIPNL 286 Query: 299 ------------LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 LL D + + S + + ++ LE Sbjct: 287 FNENGEQDIANPLLASWGRLGRDNLYFISQIDSANEISAYVDTERANLLENVQQDILDLE 346 Query: 347 NKIP---------------NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KK 387 N I + + + + E + L +++ + Sbjct: 347 NHAQLGTTLENYETSIGKRPINELDDSITFHLCHSAQREVEVLQDHLLSLFEQDSSLTPR 406 Query: 388 KSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 ++ AD + + + I IS L LL+ Sbjct: 407 DVIVMVADIDSYAPYIQAVFGNTASTRYIPFSISDRKALQAHPILQAFIMLLDLPQSRFS 466 Query: 443 FMAIATLVK----HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-----KSLVL 493 + +L++ E L R + + ++ L + Sbjct: 467 TEQVLSLLEVSAFSQRFGIDESELSLLRRWVNESGIRWGLDDDNVRSFALPVIGQNTWEF 526 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISD 552 + L + + L+ T + ++ + + Sbjct: 527 GLSRMLLGYAMDSRNGPWNGILPYDECSGLAAQLAGKLALLINTLREWRSLLAQERLLEE 586 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W +L L + + + L + + I +G + D ++ Sbjct: 587 WKELCQQLLDSYFMVDGETELVLALLT--EQWHQIIDNAIISGYEEQVPLRLIRDELSVR 644 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 D E + + + + + R + F + L G+N+G +P+N L + ++ Sbjct: 645 FDDEKISQRFLAGA-VNFCTLMPMRSVPFKVVCLLGMNDGAYPRNIPP---LGFDLMAEK 700 Query: 673 NLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRL 719 ++ K + F A ++ L + +N P S + L Sbjct: 701 PVRGDRKRRDDDRYLFLEALNSASKQLYVSYIGLSIRDNQPCNPSVLVTEL 751 >gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1] gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1] Length = 1074 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 112/1046 (10%), Positives = 274/1046 (26%), Gaps = 157/1046 (15%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 L R T+ A L G + P + + Sbjct: 93 AGLWPERREGPPRPGEDAEEEPTEPTVATYHSYASGLLSEH-----GLRIGHEPDTRLIA 147 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 D + A + + L + +L+ + ++ + S Sbjct: 148 DATRYQLAARAVARHTHPVEKLTDYPKLAVQQLLALDSELSEHLVDPATLRAYDRNERSL 207 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A +AD+ + ++ L ++ + L + +RL + Sbjct: 208 -----FALEVADLNAQLADGKRVKTKLTKVEKAIDAIDKRYELLDLVDGYRRLKDRLGLM 262 Query: 203 NASSP--VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + S + ++A+ E + +G +++ + A A++++ + +G V Sbjct: 263 DFSDQIALAARLAVETPEVGEIERGKFKVVLLDEYQDTSVAQAQMLARLFG--DGHPVTA 320 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D + W + + + + S + ++ Sbjct: 321 VGDPNQAIYGWRGASVSNILEFGRDFPTRDGRRPSYSLTVNR------------------ 362 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 RS + + + E + +V + + +E + +A + Sbjct: 363 --RSDARILATANHLAAQLYEGREKERLVAAEGARDGEVRVHVHETYDDELLWLADKVIE 420 Query: 381 SLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 + + + ++T D + A V LT I ++I L + + + + + Sbjct: 421 AHEAVGEWKEIGVLTRDNSQAAAVFDALTAREIPVEIVGLKGLLRLPEVAEVVATMELLH 480 Query: 439 KLNDFMAIATLVKHP------------------LAKFGFPEKYLSRAKNALE-------- 472 + A+ TL+ P LA + + + LE Sbjct: 481 DVTANAALLTLLAGPRWAIGPRDLAILGRRSRDLAGVVGGAEEFADIERQLEAAVEGTDP 540 Query: 473 ---LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 ++ D D R + + + ++E +L ++D Sbjct: 541 TEIPSLNDALEDPGDAADYDYSPQARERFKLLADELRGLRRAVNEPLLDLVRRIIDVTGI 600 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + ++ NL + L +E G+ L Sbjct: 601 DVELAASVSPAASARRDNLDLFVQAVAEFEGLDGQVTLAALLAYLEAEDEYGQGLDVATP 660 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 ++ + + + ++ + G T K + L Sbjct: 661 SEADSVKLLTVHRAKGLEWDVVFLVGVTHKKFPTGQTRSSWLTVPSVMP------AALRG 714 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 + P+ + + ++ + + A + A + + R Sbjct: 715 DRDDLPQLHGHDADSIDELLAERKEHERVEELRLAYVAWTRARHIQFVSCWRWSPSLKEG 774 Query: 710 TIASRWLQ-----RLLVLGGTDFFDNLKKRGQ------------------------CYLD 740 S +++ L D + ++ +G+ L+ Sbjct: 775 RGPSVYVEKTREALLQWGAKPDRWADVVVKGEEESPYAALEVDLPWPINHHTPEVERRLE 834 Query: 741 WTRKLDYTTKQP------------------------HYKRPKPFPPLEAQPRTYSFSEIK 776 R + P +R + + P + S + + Sbjct: 835 AARLVREVGPGPDDLDDLTLLETVNQWDEEIERLLTEAERERAPEVVVPLPSSLSATAMS 894 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 +L +DP A + P +K + GT FH + ++ + ++ Sbjct: 895 KLRDDPLGFAADLV-----RPMPRKPSSQARFGTRFHAWVEARFGQQDLFDPDDLPGRAD 949 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 I+ ++ +F + + V + + Sbjct: 950 HGIEDE---------------SGLEEVIAAFEQGPFADRPPFR---VEAAFAIVLAGQ-- 989 Query: 897 HLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRK 956 + G D + G I D+KT + Q QL+L + + K Sbjct: 990 VVRGRIDAVYQEPDGSFLIVDWKTNQS------QNADPLQLALYR--VGWAELMGLPLSK 1041 Query: 957 VANLFYIRLKQKFKIDCITNDKKKYS 982 V FY + D+ + Sbjct: 1042 VRAAFYYVRSGRLVEPPGLADRGELE 1067 >gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12] gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12] Length = 723 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 77/720 (10%), Positives = 171/720 (23%), Gaps = 119/720 (16%) Query: 50 YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105 T +A E++ GK+ I + + + + + Sbjct: 55 VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +L + R+I P A+W I+ + E ++ Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + ++ W+ + ER + + Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I+I + + +AN + D W Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 H Q+ L + + + + + Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398 N D + ++ + L A NE +EA I R + + + A++ Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R + L I + G+ + L + +D A +V P+ G Sbjct: 356 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 V TQ S Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A + L + L + ++L + + + Sbjct: 449 RARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E S + + I ++ V + ++ ++ Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + L GL G++P + L ++ + + RH L Sbjct: 566 LEFPLVFLVGLENGLFPSARS--------------LDEHDRLEEERRLAYVGITRARHKL 611 Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 I + + + + SR+L+ + + ++ Q L ++ + + Sbjct: 612 ILSYAQARRIHGKDNYNVPSRFLREIPQNLLHEVRPTIQVSHQTPLGAVQRPAHDERDAA 671 >gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis] gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 121/1003 (12%), Positives = 258/1003 (25%), Gaps = 141/1003 (14%) Query: 58 QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115 + L E + G + P L D+ + ++ L V + A Sbjct: 239 RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + L D DL + + + ++ + + + E L L Sbjct: 294 GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351 Query: 176 KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + + Y L N +EA + ++ Sbjct: 352 YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405 Query: 232 IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + + ++ V + P + D + T S Sbjct: 406 VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465 Query: 291 HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 D LD K+L ++ L D T+ Sbjct: 466 EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388 I N + + E + + EA +IA +R + + Sbjct: 525 TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++ A ++ EL GI + + + ++ S+L I + +A+ Sbjct: 585 IVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +++ P+ E L R +N L H+ W Sbjct: 645 VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYG---HLQKW 701 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 ++ + V + + + K + D + + Sbjct: 702 RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624 R + + + + S+ + + ++ + ++ + G + Sbjct: 762 LRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKS 821 Query: 625 --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656 L I L S L + L E ++ Sbjct: 822 YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881 Query: 657 NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707 + K+ + + Q+D L ++Y + DF RH + Sbjct: 882 GSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHAD 941 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756 I +R+ ++ + D+L++R + + + P Sbjct: 942 ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000 Query: 757 PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P + S SEIK+ P IL KK ++ Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 GT H ++ + + + E + ++ + E ID +I F Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917 + IP +A+ + + G D + + G + + D Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDG-LYLLD 1172 Query: 918 YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948 YK+ G P + + Q+ L A++ + Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212 >gi|148262661|ref|YP_001229367.1| exodeoxyribonuclease V, gamma subunit [Geobacter uraniireducens Rf4] gi|146396161|gb|ABQ24794.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Geobacter uraniireducens Rf4] Length = 1091 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 108/955 (11%), Positives = 238/955 (24%), Gaps = 107/955 (11%) Query: 19 REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78 ++ L +VE P P TI V +K + L E G + Sbjct: 12 ETLVDQL--AGVVEKPLPSPFTPE-----TIVVQSKGMQRWLAMELARRFGVWANGE--- 61 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 + V E ++ P VS+ + RL+ + + L + L+ Sbjct: 62 FPFPNAVVETLFRAVIPDLAETPQVSSFHPDVLTWRLMELLPSCLGGPGFEPLA-GYLAD 120 Query: 139 PISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTER 198 + LA+ +AD D E L + + G W L L Sbjct: 121 DGDGLKRLQLAEKIADTFDQYTIYR--PELLLSWEEGAEGGWQGLLWRELV------RNA 172 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 A+ ++ + R + I + G P ++S +A + Sbjct: 173 TDRHRAALLAEFRRRINRPDTAAAELPR--RISLIGIPTLPPFHMEVLSGIARQTEINLF 230 Query: 259 LPGLDCHIPTAIWNTIT-EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 L I + + + + L I R+ L Sbjct: 231 LLNPCREYWGKIVSERELARLERRGLDEDPLHGYFETGNPLLASMGRIGRDFFDSLIGDC 290 Query: 318 NEMYG-----RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI 372 + I+ + + + E Sbjct: 291 GDAEFSDTFTEIRGSGLLHAIQANILDLRDRGAAGDREVIEATDDTLRIHSCHSAMREIE 350 Query: 373 SIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDISAGIPLS 422 + + D + + ++T D + I I+ Sbjct: 351 VLYDQILSLFDNDPTLSPRDILVMTPDIEAYAPYISAVFGTPEQPEQRIPYSIADRSLRR 410 Query: 423 TTLHSSILTSLLNAIFKLNDFMAIATLVKH--------------PLAKFGFPEKYLSRAK 468 + +L ++L + +++ + Sbjct: 411 EGETAEVLLAILQLCGSRFAITEVLDILEAAPVCRRFGLTDKDLETVHQWLTATNIRWGI 470 Query: 469 NALELVALRGNKNSYDIM--DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 +A+E S + L L+L ++ E + Sbjct: 471 DAMERTGHGVPAFSENSWQAGLDRLILGYAMAGEDRHFFGEILPYDHLEGSDAL-----L 525 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 + + + T + + I +WT + + L + E + TL Sbjct: 526 LGRFLEFCETLFSRVQALARPRQIEEWTAVLRSLL------GTFIKADGDDERDVATLLK 579 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDT 643 + ++ E + I+I+ + + + + L R + F Sbjct: 580 VIERLDECRAHANFGGDVGIEIVRAWLGEKLGSEQRGFGFLTGGVTFCAMLPMRSIPFRV 639 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L G+N+GV+P+ + F ++ + + + Sbjct: 640 IALLGMNDGVFPRRNRPHGFDLIAASPRRGDRSQRDEDRYL-FLEALLSARERFSISYVG 698 Query: 704 RE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRK---------- 744 + +N S + L G + + RG + Sbjct: 699 QSIKDNSELPPSVLVSELLDYIAKGFTRAGEEADETAAVRGISVRHPLQPFSRDYFRPND 758 Query: 745 --------------LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 L P A+ + ++ + +P + RR Sbjct: 759 GRLFSYSRENLHGVLAAIAPPAVPATFLSRPLPPAEETLVTLYDLAEFFANPCKHFLRRR 818 Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPP 850 L + + + ++ +L H L ++ + + + + E P Sbjct: 819 LGIY-LEQRDESFAESEPFSLDHLGKYMLGQEIVAALLAGESLDNHRAVARS-RGELPPG 876 Query: 851 HIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 I + F + ++ P ++ +E L G +RI Sbjct: 877 ECGTITYDTLASAASDF----AEQVAAATVGAPLPPLEIDLEFKESRLVGRIERI 927 >gi|320093577|ref|ZP_08025467.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338] gi|319979475|gb|EFW10947.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338] Length = 285 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 72/269 (26%), Gaps = 27/269 (10%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P P + S S K+ P I T GTL H ++ Sbjct: 6 APRPGPRSWEPALSASRAKEYERCPLQYRLHVIDGYREP-----ATRATAMGTLIHAVLE 60 Query: 818 ELIKKRINKNTPEINHLM-----KQIIDS--HFEKENLPPHIDIIWRHLFHKISHSFLEH 870 +L T E M + ++ W + + Sbjct: 61 DLYGLEAPGRTEEAAQEMVGDRFEALLRRDPTVGALFDDDGDRQRWLGEVRAVLGQYFAI 120 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E+ I + + + G+ L GF DRID G + + DYKTG P + Sbjct: 121 EDPKW--IAPWAREKNVEASTRA-GVRLRGFIDRIDRAPDGRLRVVDYKTGKAPSPRFTE 177 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + + Q+ A L + A + + LK + +E E+ Sbjct: 178 EAL-FQMRFYALLLMRTAVL------PARMQLVYLKSGRVLTLDPFPGDIERFEERVEEL 230 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + V F Sbjct: 231 WGRIEADVR-----GDGFAPRKNPLCNWC 254 >gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1] gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1] gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa GB514] Length = 728 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 78/720 (10%), Positives = 170/720 (23%), Gaps = 119/720 (16%) Query: 50 YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105 T +A E++ GK+ I + + + + + Sbjct: 60 VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 116 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +L + R+I P A+W I+ + E ++ Sbjct: 117 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + ++ W+ + ER + + Sbjct: 156 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 208 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I+I + + +AN + D W Sbjct: 209 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 262 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 H Q+ L + + + + + Sbjct: 263 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 300 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398 N D + ++ + L A NE +EA I R + + + A++ Sbjct: 301 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 360 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R + L I + G+ + L + +D A +V P+ G Sbjct: 361 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 420 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 V TQ S Sbjct: 421 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 453 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A + L + L + + ++L + + + Sbjct: 454 RARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 513 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E S + + I ++ V + ++ ++ Sbjct: 514 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 570 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + L GL F S + E+ + + RH L Sbjct: 571 LEFPLVFLVGL---------ENGLFPSARSLDEHGRLEEERRLA-----YVGITRARHKL 616 Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 I + + + + SR+L+ + + ++ Q L T++ + + Sbjct: 617 ILSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGATQRPAHDERDAA 676 >gi|145630036|ref|ZP_01785818.1| phosphopyruvate hydratase [Haemophilus influenzae R3021] gi|144984317|gb|EDJ91740.1| phosphopyruvate hydratase [Haemophilus influenzae R3021] Length = 1117 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 116/966 (12%), Positives = 240/966 (24%), Gaps = 124/966 (12%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + +T +L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQLYTQNLP 78 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI + K + L S L+ +AD Sbjct: 79 ATA-LENPFDKDSMMWRLMRLIPTFLEK--ESFSPLRNYLASSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRFDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 F + D + + ++ + + +D Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 518 ELA-------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 L + Q T L SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQA---HSIEKWQEILTALLSDFFVRNED 612 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSST 627 +++ + +++ E + ++I +I + + Sbjct: 613 TSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFLAGK 666 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + L R + F + L G+N+ +P+ N F + Sbjct: 667 VNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LF 724 Query: 688 FEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC------- 737 E R + R +N P S + +LL +N+ + Sbjct: 725 LEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQNENVLTVTEHPMTAFSP 784 Query: 738 -------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 W + + + + + + +P Sbjct: 785 DNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVENPVK 844 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + + L + F ++ D + TL + + N Sbjct: 845 FFFEKQLGVYFRDKDERIADSENF-TL--SGLDNY--SLNNDLIYLDEQNFTDYFRQAEV 899 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIHLTG 900 K LP + I ++ LE +EKI E +I +A++ + I L G Sbjct: 900 KGVLPRA--EFGKVYAENIRNNVLEFKEKIVDLGEPKQASIDFNIAVDWQNENQKIRLFG 957 Query: 901 FADRID 906 + D + Sbjct: 958 YVDALF 963 >gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] Length = 723 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 74/719 (10%), Positives = 167/719 (23%), Gaps = 117/719 (16%) Query: 50 YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105 T +A E++ GK+ I + + + + + Sbjct: 55 VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +L + R+I P A+W I+ + E ++ Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + ++ W+ + ER + + Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I+I + + +AN + D W Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 H Q+ L + + + + + Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398 N D + ++ + L A NE +EA I R + + + A++ Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R + L + + G+ + L + +D A +V P+ G Sbjct: 356 SRAFEEVLQSEHMPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 V TQ S Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A + L + L + + ++L + + + Sbjct: 449 RARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E S + + I ++ V + ++ ++ Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L F + L GL F S + E+ + + LI Sbjct: 566 LEFPLVFLVGL---------ENGLFPSARCLDEHGRLEEERRLAYVG----ITRARHKLI 612 Query: 699 YTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + + + + SR+L+ + + ++ Q L ++ + + Sbjct: 613 LSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGAAQRPAHDERDAA 671 >gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] Length = 1292 Score = 101 bits (251), Expect = 7e-19, Method: Composition-based stats. Identities = 117/994 (11%), Positives = 232/994 (23%), Gaps = 165/994 (16%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI----IKSLGD 83 L E + A + I PT+ A +R + + ++ P + Sbjct: 16 HHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAAYAFDL 75 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + + L +S ++ + + L+ + + + Sbjct: 76 LKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELLANHAEGIAP------GPAWPDVLRDAL 129 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 + D D + + ED+HAL E W A L N Sbjct: 130 ATRGFRHEIRDFFDRMAEYDLTAEDVHALATEHNQPAWHALAQLHTEYRAV--RALRAKN 187 Query: 204 ASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH------ 252 A P ++ L E + I+I P+ RL+ +A Sbjct: 188 AYDPAVLINDACRLLLRAPEFLAEERRRYDLILIDDVQELSPSIYRLLRLIAAEVAPADA 247 Query: 253 -----------PNGAIVLPGLDCHIPTAIWNTITEKSTN----ITSSNTTYSTHPQYSLA 297 G V+ + S T + Y L Sbjct: 248 AHLTETHPDLFAEGPQVVMTYSDEAVVQGFRGARPDLVTTLQSSFPSMRTRTLTTSYRLP 307 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRS----------------MVISKSFLPPDTSDMRN 341 L+ L + + P + Sbjct: 308 ALMMPLVADIRRRLPRYTRFVPLTAEQEGAKNGAQGGVKNGAPATFGRINTTPADEALTW 367 Query: 342 TDILEN-----------KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENKK 387 E + + + V + ++EA IA L + + Sbjct: 368 GAADEPLLHLGADGKILDPAHYRTAPAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYR 427 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGI-PLSTTLHSSILTS-------------- 432 +SA+I R++ L+ GI SA + P+ Sbjct: 428 ESAIIVRSSADVARIRRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLVYARKRGEK 487 Query: 433 --------------------------------LLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + + D + +PL Sbjct: 488 ALNPAVHMPAAEGAEGTEAAERGGYETLSVTEAEELMRRSLDDVIAEESRANPLGGAQSA 547 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 L+ + +R + ++L R + + H ++ E Sbjct: 548 ITLLTSRLGGASSMDVRRLRQQLRSIEL-QSGGHRPSDDLLLGALLHPETLPEEGVGRAV 606 Query: 521 VLLVDHILQCITPLVTYKTNK-NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW-FE 578 + + L ++ S K VT ++ D NL Sbjct: 607 HRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRSAGPDADAAHRNLDAMI 666 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + ++ G+ + I+ D+ + V+ + IL + Sbjct: 667 GLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQ-----DAVEILTPALAAG 721 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFL--------------------------------SR 666 ++ T+ + GL EG WP T + L Sbjct: 722 QSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPA 781 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 ++S ++ + L+ T ++ P ++ +G + Sbjct: 782 RIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDST 841 Query: 727 FFDNLK-KRGQCYLDWTRKLDYT-------TKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + +R +L T + + + AQ E Sbjct: 842 DVPITRVRRPATLRSLVAELRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALTP 901 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 Y + A D L TEL+ + E++ + Sbjct: 902 EASAYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAELDENHGED 961 Query: 839 IDSHFEKENLPPHIDIIWR--HLFHKISHSFLEH 870 + E P I I S L+ Sbjct: 962 GEEPAENPAENPGRRTITLSPSRLETIHSSPLDW 995 Score = 80.0 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 63/592 (10%), Positives = 156/592 (26%), Gaps = 64/592 (10%) Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALR 477 G+ + +++L++ A+ + + SR+ A R Sbjct: 601 GVGRAVHRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRSAGPDADAAHR 660 Query: 478 GNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTY 537 + + +++ + ++ D A + ++ +TP + Sbjct: 661 NLDAMIGLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAA 720 Query: 538 KTNKNS----------------TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + LS D T L L+ ++ Sbjct: 721 GQSWRTVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPP 780 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + S ++ +T + + V+ + F + + Sbjct: 781 ARIRSYPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDS 840 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + + + ++ + V +S ++ + + + Sbjct: 841 TDVPITRVRRPATLRSLVAELRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALT 900 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY----------LDWTRKLDYTTKQ 751 ASR L RL + +LD + Sbjct: 901 PEASAYRLDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAELDENHGE 960 Query: 752 PHYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + + P + T S S ++ + + P + + GT Sbjct: 961 DGEEPAENPAENPGRRTITLSPSRLETIHSSPLDWL------VSAARAEAQTDLSRSLGT 1014 Query: 811 LFHNIITELIKKRINKNTPEINHLM---------KQIIDSHFEKENLPPHIDIIWRHLFH 861 L H I E + + ++ + + D + + + Sbjct: 1015 LVHAIAEEYPTGTLEELQNALDERISSLGVPARKEDETDEEYRERVPWESYALYE--RAK 1072 Query: 862 KISHSFLEHEEKI--QSSIEKIFVNIPAKM----------AIESIGIHLTGFADRID--- 906 ++ + + + + + V + + + LTG DR++ Sbjct: 1073 RMILRLSYYYRQHMGDAGWQNLGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTA 1132 Query: 907 --LLKSGFVDITDYKTGDN-PKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 + I D KTG + P + PQL+ A++AG+ Q++ R Sbjct: 1133 PAEDGTRRYAIVDLKTGKSKPTGSEMETH--PQLAAYQIAVEAGAGEQLEER 1182 >gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 1141 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 94/914 (10%), Positives = 233/914 (25%), Gaps = 106/914 (11%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLV+ + + + S+ + + +A EL K + + I + + Sbjct: 227 RTLVQRIQSLLTDGVDPMSILVLTFSNKAANELSERLAASNPKAAAAM-WIGTFHAFGLD 285 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 L + E L+ +LP + P +AI Sbjct: 286 IVR-RFHDKLGLP-AGPRLIDRSEGIELLEDELPRLPLHHYRNLWD-PALDLSDMLSAIS 342 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 AK+ ++ID + ++ + + + + + Sbjct: 343 RAKD--EVIDAVGYRALAQAMAQNCADDADATMRAEKCMEVALVYETYERLMTAKQLIDF 400 Query: 208 VGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ AE + ++ +++ ++ RL+ + +G + Sbjct: 401 GDLVAQPVRLVEADAEVRNALRARHKHVLVDEYQDVNRSSVRLLKAIVG--DGRDLWVVG 458 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + + + + + Q L I + + +V G Sbjct: 459 DARQSIYRFRGASATNMAQFTLDFPGAQVDQ---------LGINYRSRQEVIDVFTAFSG 509 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + + D ++ N+ AI+ AI + Sbjct: 510 TMKASTGAL-----------PLHLKASRGASGVTPDFRVVSTTNDEISAIAAAIQAQRDA 558 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 ++ AL+ A + L GI + L L +LL+ + Sbjct: 559 GTAYREQALLCASNARLSEIAEGLEARGIPVLHLG--SLFERPEIKDLLALLSMLNDPYA 616 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + + ++ I++ + Sbjct: 617 VG---------------------LVRASTMPSYELPLQDIAQIIERLRESKVAALDWRLA 655 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + P + S L D + P T G + + ++ Sbjct: 656 GNWPPELAGTSNATLARVAALFDGMSPTGNPWTILSTWVIDRLGLAKVLYLADDAQSRMK 715 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L + G + L +I + +++ + + Sbjct: 716 GLALWQFLNFCRQQPSGAGAPCTRLLDRIRR------------LVLLSEDRGLRHLPGVV 763 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLNLK 675 + + ++ S+ L F T+ + G+ N + L Sbjct: 764 DGIDAVRLMTIHASKGLEFHTVHIPGMVTSGLPRNNMAPRCVPPDGLIHGSDGITGLEAV 823 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 + + F + R ++ + + S++L + L Sbjct: 824 KSGHEEEEECLFFVALSRARDRLFLYASSVQSDGRARNPSKFLTSIRHLLIHS------- 876 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 + KL KP + S++ P + +LKL Sbjct: 877 --PNPPQRSAKLRAKACLQVAWAQKPVW---------TDSQVNLFARCPRRFFYTHVLKL 925 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 + + ++ L + D ++ + ID Sbjct: 926 GGRRT---ETAFMKMHNVVGDVFDWLKTTHEMTVP--TEAELGARFDQAWQVKG---AID 977 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 + + +I+ +++ + +S + P + I + D + G + Sbjct: 978 HGYAEDYRRIARRLVDYLIETRSRG-VLAPATPISLGWVEGEILV--RPDSVARGDKGQI 1034 Query: 914 DITDYKTGDNPKKE 927 + KTG Sbjct: 1035 VVRRVKTGKPRSNA 1048 >gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. SMY] gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 121/1003 (12%), Positives = 258/1003 (25%), Gaps = 141/1003 (14%) Query: 58 QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115 + L E + G + P L D+ + ++ L V + A Sbjct: 239 RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + L D DL + + + ++ + + + E L L Sbjct: 294 GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351 Query: 176 KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + + Y L N +EA + ++ Sbjct: 352 YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405 Query: 232 IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + + ++ V + P + D + T S Sbjct: 406 VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465 Query: 291 HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 D LD K+L ++ L D T+ Sbjct: 466 EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388 I N + + E + + EA +IA +R + + Sbjct: 525 TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++ A ++ EL GI + + + ++ S+L I + +A+ Sbjct: 585 IVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +++ P+ E L R +N L H+ W Sbjct: 645 VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRSDELYQKLNTFYG---HLQKW 701 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 ++ + V + + + K + D + + Sbjct: 702 RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624 R + + + + S+ + + ++ + ++ + G + Sbjct: 762 LRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFVAGLGRNFNMMDLNKS 821 Query: 625 --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656 L I L S L + L E ++ Sbjct: 822 YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881 Query: 657 NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707 + K+ + + Q+D L ++Y + DF RH + Sbjct: 882 GSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYLDFIGPALARHRDLGDLAGVPAHAD 941 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756 I +R+ ++ + D+L++R + + + P Sbjct: 942 ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000 Query: 757 PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P + S SEIK+ P IL KK ++ Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 GT H ++ + + + E + ++ + E ID +I F Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917 + IP +A+ + + G D + + G + + D Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDG-LYLLD 1172 Query: 918 YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948 YK+ G P + + Q+ L A++ + Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212 >gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3] gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3] Length = 1130 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 96/980 (9%), Positives = 231/980 (23%), Gaps = 132/980 (13%) Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V N RL L LI + + + + L L + + Sbjct: 158 VVDNALRLGLEPDLQLISGAARYQLAARVARSHGGKVEALTRSLGALVGELVALDAEMSE 217 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKI-------------------------ASKYWT 196 DL A + + Sbjct: 218 HLVDPADLVAFDGALLAEIDAALRRAEQRRGTRGVRRELRRCAAAARGRRELAALVAEYR 277 Query: 197 ERLVELNASSPVGY-----QIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 E + ++A E + +++ + A R+++ + Sbjct: 278 AARRERDVLDFGDQVTCAARLAETMPEVGRAERARAAVVLLDEYQDTSVAQRRMLTGLFG 337 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 G V D W + + + ++ + ++ +L ++ Sbjct: 338 --GGHPVTAVGDPCQAIYGWRGASVANLDHFPTHFPGADGTPAAVYELSVNQRSGGRLLR 395 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 V+ ++ R V+ P L + E Sbjct: 396 LANTVAAQLRARHRVVELRPRPDVADQGEAVVALHVSWAD------------------EV 437 Query: 372 ISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 IA LR +D A++ R + + G+ +++ L + Sbjct: 438 AWIAGQLRRVVDAGTAPGDIAVLVRARGDIPALFTAMQAAGLPVEVVGLTGLLIVPEVAE 497 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + ++L + A+ L+ P + G + ++A E + D+ Sbjct: 498 IVAMLEVLDSPTANAALVRLLTGPRVRLGPRDLAAL-GRHAREAARVPDPVGDPDLPGRS 556 Query: 490 SLVLDRIAT----------QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + +A + P + + LA + L+ Sbjct: 557 DPLAEAVADVDPADVVALSDVLDDPGPQMSAPGRARVRRLAAEIAALRGHVGEGLLDLLH 616 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT----------LSSLFS 589 +T G T++ V + + + + + +G + Sbjct: 617 RVVATIGLDVELTATEVAVRARRQENVAAFLDVAAGFTDPDGTNSLPAFLGFLRAAREHE 676 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + ++ A+AI + + V +S +F T+ + ++ L Sbjct: 677 RGLDVAGPSGADAIALMTMHRSKGLEWEVVAVPNLTSKVFPDLTVRDQWTTSPGVLPIPL 736 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY---TRSLREN 706 + + + + + L++ Sbjct: 737 RGDADDLPAFTVCAEKAALDAFRADARQYAEREERRLAYVAVTRAKSLLFASGHWWGPTQ 796 Query: 707 NIPTIASRWLQRLLVLGG------TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 P AS +L L + +R L + + + Sbjct: 797 KTPRGASVFLDELAEHARTGGGLVDVWAPEPAERTNPALATPERFAWPIPYEPEPYARRL 856 Query: 761 PPLEAQPRTYSF---------SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 E + + ++ P + A + L + + +R Sbjct: 857 AAAEGVMARLAALSVPGASAEPAGEPFVDGPAGMTAAERVLLAELDREARLLLAEERAAR 916 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL--- 868 L + + P FH Sbjct: 917 LARTDVALPASLTASQIVRLRADPEAFARELVRPLPRRPVAAARRGTRFHAWVEEIFDYR 976 Query: 869 --------------------------EHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + + P ++ + + G Sbjct: 977 ALIDTEDLPGAADAELTDDDLRSLQQAFLRTAYGARRPFAIEAPFELRLAGR--IVRGRI 1034 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 D + L G ++ D+KTG + D QL + A +D V + + Sbjct: 1035 DAVYDLGGGRWEVVDWKTGRS-------DADDLQLGIYRLAWAR--LRGVDPSAV-DAAF 1084 Query: 963 IRLKQKFKIDCITNDKKKYS 982 + ++ + T +++ + Sbjct: 1085 LYVRTGAVVRPPTLSEEELA 1104 >gi|51245195|ref|YP_065079.1| exodeoxyribonuclease V, gamma chain [Desulfotalea psychrophila LSv54] gi|50876232|emb|CAG36072.1| related to exodeoxyribonuclease V, gamma chain [Desulfotalea psychrophila LSv54] Length = 1056 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 65/623 (10%), Positives = 158/623 (25%), Gaps = 42/623 (6%) Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANA--IWLAKNLADIIDIIETEEKKWEDLHALK 173 + L DI +D+Y + A LA +A + D + L Sbjct: 91 VWRLEALLRDIDEDIYLPLKKYVSGEVAELKRYQLAGQIAQLFDQYQLMRPSMLARWRLG 150 Query: 174 N---EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT---- 226 E+ W + + + +Q ++ E L K Sbjct: 151 QRVTEEDCEIWQ--MHLWQRLVEEFPA----------ARHQGEILENIIETLEKEECQRR 198 Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 I + G P + + +++ + L + + + Sbjct: 199 LPRRIFVFGLHTMAPLFLKFLQALSSRTEVHLFLLSPCREYWGEVGRGGDRLLSLEGIRD 258 Query: 286 TTY------STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + PQ LA L + + + + P + Sbjct: 259 SGVDLSSYEEEEPQQLLASLGRQ-GRDFQQMLVASAGYSIDSALYQGLGAGSPPSLLHVL 317 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITAD 395 + + ++ + ++ + E + + L + ++ D Sbjct: 318 QGDILERGRLAVTAARDDSLRIVSCHSPLRELAVLKDHILDLLYKDASLQLRDIVVMAPD 377 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-- 453 + L T+ + L L + + L++ Sbjct: 378 IQEYAPLIPALFADIQYSIADRATGQRNTVMAVFLDYLN-LFSGRFGWSEVLDLLRSEHI 436 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 ++F E + + +R ++ +L L+ + + + Sbjct: 437 YSQFSLGEGDFDLLQKWVTESGIRWGLSAEQRQELGLPPLELNTWLAGLQRLLLGFAMSA 496 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + E + D L G + +L + + D R Sbjct: 497 DTMVEGVLAYSDIEGNSAQALGGLCEFLQVLQGGQELYTTPRLLHEWAELLQGDAERLFG 556 Query: 574 NLWF--EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STL 628 +E + + + + E + + ++ + + + L Sbjct: 557 GEENSAHQELQQILAGLGRGREYQGVLLYSQPIAFQVVMAWLQQASAQVGSSAGFLRGQL 616 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 L R + F + L GLNEG +PK + F + +L ++ + + Sbjct: 617 TFCSMLPMRSIPFRVICLLGLNEGKFPKQDKQATFDLLASKPELGDRSP-RIDDRYQFLE 675 Query: 689 EMANGTRHLIYTRSLRENNIPTI 711 + + L + R Sbjct: 676 ALISVRDSLYLSYVGRSIKNNGE 698 >gi|228906866|ref|ZP_04070735.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 200] gi|228852870|gb|EEM97655.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL 200] Length = 1166 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 95/923 (10%), Positives = 202/923 (21%), Gaps = 190/923 (20%) Query: 173 KNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP--- 229 + +K+ ++ + + + ++ +E G P Sbjct: 263 DFQDMHPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAV 322 Query: 230 ----------IIIAGSTGSIPATARLMSTVANHPNGA-IVLPGLDCHIPTAIWNTITEKS 278 +++ + ++ V + D + Sbjct: 323 ALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGL 382 Query: 279 TNITSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 T + + L K++ Sbjct: 383 FLGKYKRFTQEGLGGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKL 442 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------- 384 L ++ E + + EA +A ++ +D Sbjct: 443 GATYPEGEDVAAELLCIEQTEEEVIDGEEGAEVEKAQLEARLMAQRIKAMVDSGYEVYDR 502 Query: 385 --------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + ++ A ++ EL GI + +I+ ++ Sbjct: 503 KTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRV 562 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I + +A +++ P+ + RA Sbjct: 563 IDNPMQDIPLAAVLRSPIVGLNDEDLATLRAH---------------------------- 594 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 K S L E L + + S+SD Sbjct: 595 --GKKGLFYEVMSSFLKGAPLEEEQELHEKLEWFY----NLLQGWREFARQQSLSDLIWK 648 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + + I+ R D Sbjct: 649 VYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMG 708 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFLS 665 T + E+ + I+ +S+ L F + + GL + F+ Sbjct: 709 TARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFID 768 Query: 666 RVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTIA--- 712 + + E + + + LI ++++ N Sbjct: 769 PRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLD 828 Query: 713 ----SRWLQRLLVLGGTDFFDNLKKR---------------------------------- 734 S WL + G + + Sbjct: 829 AREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEV 888 Query: 735 --GQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLINDPYAVY----- 786 G L + + R K P + + + + Y Sbjct: 889 VDGNTLLAPEPVQEEKQELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATFYRAKQS 948 Query: 787 ---------------------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 R +K KK +RGT H ++ + + Sbjct: 949 VTEIKRNYQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV-----D 1003 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNI 885 P ++++ I KE L + K+ F K + + + + Sbjct: 1004 LKKPITVEVLQEQIAGMVNKELL--TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREV 1061 Query: 886 PAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKETA 929 P M + + I + G D + + G + + D+KT G P Sbjct: 1062 PFTMMLAAEEAYQDWQGKSEETILVQGVIDCMIEEEDG-ITLIDFKTDTIEGKFPGGFEQ 1120 Query: 930 QKL-----IDPQLSLEAAALKAG 947 K QLSL A AL+ Sbjct: 1121 AKPILEDRYKVQLSLYAKALEKS 1143 >gi|54026511|ref|YP_120753.1| putative DNA helicase [Nocardia farcinica IFM 10152] gi|54018019|dbj|BAD59389.1| putative DNA helicase [Nocardia farcinica IFM 10152] Length = 1184 Score = 101 bits (250), Expect = 8e-19, Method: Composition-based stats. Identities = 101/894 (11%), Positives = 219/894 (24%), Gaps = 82/894 (9%) Query: 3 NKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELR 61 +++ V P A T+ + N L+L V T++A Q+L Sbjct: 19 DEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRLVLPEQVLGLTFTRKAAQQLT 78 Query: 62 SEFIEITGK--KSTILPIIKSLGDVVEEKFTADL------------LLSYNLNPPVSNIQ 107 + + S +L + S G++ + A+ L + L PV Sbjct: 79 ARIRTRLARLAGSALLRELDSGGELRAQLAGAEPEISTYHSYAGRLLSEHGLLLPVEPSA 138 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 LL +L + + + DL E + L+ LA+ + E + Sbjct: 139 TLLTETQLWQLAHQVVRNWDGDLDTERTPVSVTEA--VLALSGQLAEHLVEPEELAEAHA 196 Query: 168 DLHALKNEKYGMWWLL-----AADFLKIAS----------KYWTERLVELNASSPVGYQI 212 +L L N A + + + L A Sbjct: 197 ELEKLINTLPAGPRQRGGPSKALRDIVRVQHERVALLPLVRALNDALRRRGALDFGAQMS 256 Query: 213 ALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------- 257 R AEH +G +++ + A L+S + G Sbjct: 257 LAARLAAEHPEVAEAERGRFRLVLLDEYQDTGHAQRVLLSALFGGAAGDPEGTAGGRAPR 316 Query: 258 --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 V D W + + +++ + + LL Sbjct: 317 PAVTAVGDPMQSIYGWRGASAANLPRFATDFPCAPGAPAPILPLLTSWRNPP-------E 369 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + ++ + + P + +++ E I+ Sbjct: 370 ALALANLVAEPLRQAAREAGGATVDALRAKPGAEPGVVALALTETVVDERGWVAERIAAE 429 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 A R + E SA++ A + L G+ ++I L T + + + L Sbjct: 430 WAARRAAGEPPPTSAVLVRRNADAAPLAEALREQGLPVEIVGLGGLLATPEVADIVATLR 489 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 I + A ++ + G + + V +I D +L + Sbjct: 490 LIAEPAAGSAALRVLTGARWRIGVADLAALSRRARELSVVRTDTAVGAEITDGAAL--EA 547 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + V + D A Q I L G +++ Sbjct: 548 ALREVTPEPVEQAGLADAIADPGPAENYSAAGYQRIEALGRELAALRERSG-QPLTELVA 606 Query: 556 LTVTCLQNV--CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L E + + + + ++ + Sbjct: 607 DVERTIGVGVETQARRAVLGAGAGREHLDAFAEVVAGYAADPGASLGGLLAFLTAAESVE 666 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR------- 666 +G + +L ++ L ++ + + + V+P TA +L Sbjct: 667 NGLEPGEVEVAKDRVQVLTVHAAKGLEWEIVAVPHVVRRVFPSGTAGGTWLGALAELPTA 726 Query: 667 ------VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLL 720 + + + D E A R + + L R Sbjct: 727 LRGDRVAEDAAEGVPVLDLTDLYDRADLERALAAHKAAL-ERRRIDEERRLFYVALTRTE 785 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 + + + + + + + Sbjct: 786 RVLLVSAHHWAETGDPKGPSDFLLELKSAAETPGGPAHGAVEIARWDDPPPVDAVNPFAD 845 Query: 781 DPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 +P D ++G ++ P + H Sbjct: 846 NPATAE-------WPRDPLGPRRDPVEQGAALVRAALAELRAPAGPRAPAVPHA 892 Score = 71.5 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 54/518 (10%), Positives = 126/518 (24%), Gaps = 36/518 (6%) Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + L+ ++ + EL L + + Sbjct: 687 HAAKGLEWEIVAVPHVVRRVFPSGTAGGTWLGALAELPTALRGDRVAEDAAEGVPVLDLT 746 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + L+ +DE R+L + + L ET K + Sbjct: 747 DLYDRADLERALAAHKAALERRRIDEERRLFYVALTRTERVLLVSAHHWAET-GDPKGPS 805 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 +++ + + + +++ D Sbjct: 806 DFLLELKSAAETPGGPAHGAVEIARWDDPPPVDAVNPFADNPATAEWPRDPLGPRRDPVE 865 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-----GTRHLIYTRSLRENNIPTIASRWLQ 717 + ++++ L A A A + + + +P+ + + Sbjct: 866 QGAALVRAALAELRAPAGPRAPAVPHAPAVPRPAPRHTPTVPPPTDTDGPLPSAPNDDVP 925 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + ++ W +D + P + + + Sbjct: 926 QPQSPCLDPVVTDVPTDPDDPEGWAADVDALLAEHEATVRAAR--EVELPGQLPATALVE 983 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L DP A+ +L + +P RGT FH + E Sbjct: 984 LRADP----AKLARRLRRPLPYPPNPLAR-RGTAFHAWVQRWFSGTRLLGFDE------- 1031 Query: 838 IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 P + ++ +FL +S I V +P + +I Sbjct: 1032 -----LPGAGEPDPGEAAADAELARMQDAFLNSAWAHRS---PIDVEVPFETSIAGT--V 1081 Query: 898 LTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE-----AAALKAGSFSQI 952 + G D + G + D+KTG P + + QL++ + Sbjct: 1082 IRGRMDAVFAEPDGRWVVVDWKTGAEPDPGD-EPAVAMQLAIYRLAWARLMAARTGGDEQ 1140 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + + ++ I A+ + + Sbjct: 1141 AMLHRVDAAFHYVRSGRTIAPADLPGPDELAELIRAAA 1178 >gi|34499532|ref|NP_903747.1| exodeoxyribonuclease V subunit gamma [Chromobacterium violaceum ATCC 12472] gi|34105382|gb|AAQ61737.1| exodeoxyribonuclease V, gamma subunit [Chromobacterium violaceum ATCC 12472] Length = 1065 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 96/901 (10%), Positives = 205/901 (22%), Gaps = 71/901 (7%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 A+ T+ V ++ + + + G + ++ A Sbjct: 28 DPFAAETVIVQSRGMGRWITLDVARKAGIAA----------NIDFALPAAFAWRLMQKVM 77 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 P + L LP + + + L A A LA +ADI D Sbjct: 78 PDLPRKSAFVPEVLAWRLLALLPSLSGEPFGPVLHYLEGGEAAAFELAGKIADIFDQYLV 137 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-EAE 220 W L W P +++ ++ A+ Sbjct: 138 FRPDWIRAWEAGELLGLGEDEAWQASL------WRRLAES----DPGRHRVRMLDQFFAD 187 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + + + G P L+ ++ + + I + Sbjct: 188 LKPEHLPPRVTLFGIASLAPMYLALVKRLSQLTDVCLFTLNPCEAYWGDIVDARRLLKLR 247 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 HP L L ++ + + L D+ Sbjct: 248 QAGDLFATQGHP---LLSSLGKQGRDFFELIAEDAELDAKPLFAAPKGDGLLARLQRDIL 304 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADR 396 + + + + E ++ L + K A++T D Sbjct: 305 QLNDPSQLPRPFDPADASIEVHACHGPMRELEALKDRLLAMFAADPKLSPADVAVLTPDI 364 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I I+ S ++L + L Sbjct: 365 NAYAPYIDAVFGRRDDAPNIPYSIADRRVEREQPLLSTFAAVLKLADSRFAADEVLALFD 424 Query: 452 HPLAKFGFPEKYL-----SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 P F + R + + Sbjct: 425 CPALLARFDLADADLAFIQDWVRDAGIRWGRDAAHKASLGLPAEAAYTWRWGLDRLLLGT 484 Query: 507 HWQSRLSEEDKELAV----------LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 L+ +D L L + + + ++ + W + Sbjct: 485 VLPPALAGDDAGLFAGLLPYTAAQGQLGETLARFAGFYDALDALADAWSQPAAPQQWAQR 544 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L E L + L+ L G D + R + Sbjct: 545 FHQACDRLFLAEGDDEAALELLR--EALAELAENADLAGFGQPVGLAVARDWLLRKLSSS 602 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + S + + R + F L L G+N+G +P++ F ++ Sbjct: 603 SA--QGFLSGGVTFCAMVPMRSIPFQALCLIGMNDGAYPRDERPVSFDLVARNPRRGDRS 660 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLREN--NIPTIASRWLQRLLVLGGTDFFDNLKKR 734 ++ + + + L + + P S + LL +++ R Sbjct: 661 R-RFDDRYLFLEAILSARGRLYLSYVGQSARSGEPLPPSPLVSELLDTLSAMCGEDMAAR 719 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + R F P A +E + A ++ L Sbjct: 720 -LTLRHPLQPFSPKAFDGGDARLASFEPAFAAALAAPPAEPAPFVAPLPDEGAATVVNLH 778 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDI 854 F ++P R + + + + + + L Sbjct: 779 DFIRFWQNPARAWLADRLALRVAYSGDAQPAREPFAMARDASHALRRQLVEAMLHGKPPQ 838 Query: 855 IWRHLFHK--------ISHSFLEHE-------EKIQSSIEKIFVNIPAKMAIESIGIHLT 899 R + ++L+ E + P + +E G L Sbjct: 839 PVRQRVAAAGLLPCGELGQAWLQEEGRASVRLAGRLPGALRGEALPPQPVHLEIAGFTLV 898 Query: 900 G 900 G Sbjct: 899 G 899 >gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length = 1117 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 85/752 (11%), Positives = 188/752 (25%), Gaps = 71/752 (9%) Query: 46 SVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLGDVVEEKFTAD---------- 92 + T++A EL + +L G++ +AD Sbjct: 67 EILGLTFTRKAASELAARIRRRLSMLAGSPALL-EWDPGGELASRLRSADAEVSTYHAYA 125 Query: 93 --LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 L+ Y L PV LL L + + + +L + + L Sbjct: 126 GRLIADYGLLLPVEPTATLLSETELWQLAFSVVASWPGELK--TAKVPASVTEAVLRLYS 183 Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLA---------------ADFLKIASKYW 195 +A+ + ++ DL+ + + A L Sbjct: 184 EMAEHLVGVDELSAAGADLYRMIDTLPKGPGQRAEPSQKLRAYQAVMDERRELIPLVVAL 243 Query: 196 TERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E + A R AEH + +++ + + L+S++ Sbjct: 244 REAMSAQGALDFGSQMSLAARLVAEHPEVVDAERAGIKAVLLDEYQDTGHSQRILLSSLF 303 Query: 251 NHP-----NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 V D W + + + + +LL Sbjct: 304 GGHAIGGRRAIAVTAVGDPIQSIYGWRGASAANLPRFARDFPRPDSRDAHRRELLTSWRN 363 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 R + S E+ R + +S P V L + Sbjct: 364 CRGALYLANQTSEELRRRGVPVSVLR------------------PRPDAPDGTVRLALTE 405 Query: 366 NEREEAISIAIALRMSLDENKKK------SALITADRNLARRVKLELTRFGINIDISAGI 419 +E IA + ++ +A++ + + EL R G+ ++ Sbjct: 406 TVIDEREWIADCIEDYYATAQRDGVAPPTTAILVRRNEDSAPLAAELERRGVPAEVVGIG 465 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L + + + L + A L+ A++ L+ +A Sbjct: 466 GLLHVPEITDIVATLRLMADPMAGTAAMRLLTG--ARWQLGAADLAALWRRARELAAGAG 523 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + + + D + V + D + I Sbjct: 524 APTTGAVTSREALDDALDAALPGEAVDSAGLCDALADPGDQSRYSAAGFERIVTFGRQLD 583 Query: 540 NKNSTCG--NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 G + + T+ + R + E + + + Sbjct: 584 GLRRRLGQPLPELVADVEQTIGVAVEAQIRARRMRGEVTGREHLDAFADYVTHYADRSGA 643 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + ++D + G + IL ++ L +D + L + + ++P Sbjct: 644 TLPGLLAFLDAAEVVEKGLEAGQVEVAQQRVQILTVHAAKGLEWDVVALPHVADRIFPSG 703 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQ 717 A+ +L + L+ G + +++ I R L+ Sbjct: 704 KAETTWLGSPRELPAELRGDLSRDGDEGFPPLDLTEVADRKELEAAIDDHKEAIGQRRLE 763 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 L + W+ D Sbjct: 764 EDRRLLYVALTRAKQTLLVSAHHWSETGDRPR 795 Score = 59.6 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 85/296 (28%), Gaps = 31/296 (10%) Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 R + + L+ + + R+ + Sbjct: 845 RQISIGWPVDLLGERRAPMVAAAELVDSMRAERALFAVADDEPADADAREWRREVQVLLD 904 Query: 755 KRPKPFPPLEAQPRT--YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 +R + P+ S S++ +L +D A AR P + RGT F Sbjct: 905 ERAQAVDPMVDVELPGHLSVSQLVELDSDQEAFAARLR-----RPVPYRPNPMARRGTAF 959 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H + + E+ + + + L + FL Sbjct: 960 HAWVERRFGATRLLDVDELPGAADAVAGAVEDDLTL--------------LRAKFLASPW 1005 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL 932 + V + + I S + G D + G + + D+KTG P+ + Sbjct: 1006 ADR---TPQEVEVGFETVIGST--VVRGRMDAVFADGEGAL-VVDWKTGAVPEPA-RRAP 1058 Query: 933 IDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 + QL+ A S + KV ++ ++ + ++ A L++ Sbjct: 1059 LFIQLAAYRIAWSQ--LSGVPLEKV-RAAFVYVRHDYTLEPADLPGPDELAQILAD 1111 >gi|15602826|ref|NP_245898.1| RecC [Pasteurella multocida subsp. multocida str. Pm70] gi|12721285|gb|AAK03045.1| RecC [Pasteurella multocida subsp. multocida str. Pm70] Length = 1124 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 112/957 (11%), Positives = 238/957 (24%), Gaps = 130/957 (13%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 I V + Q L+ + E G S I +P + ++ D L + + Sbjct: 33 VILVQSPGMAQWLQWKIAEQQGISSNIKFPMP-----ASFIWQQ-YVDNLPNTEEQSQFN 86 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 L RLI ++ + L S LA +AD+ D Sbjct: 87 KASMTWRLMRLIPEHLEQV--EFQSLRHYLSSSHQTEQQKLYQLAYQIADLFDQYLVYR- 143 Query: 165 KWEDLHALKNEKYGMWWLLAADFL------------------KIASKYWTE-RLVELNAS 205 E + + L I + L E + Sbjct: 144 -PEWIACWERGDEATMMAQLERKLKDTRLPIGNAFSQDVKWQAILWRALVADILAESGQT 202 Query: 206 SPVGYQIALMRAEAEHLMKGTKG---PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 P+ + + + I G + + ++ + + Sbjct: 203 VPLHRAYLQTQFLQFLQTQHPVNLPPRLFIFGISALPKGYLEIFYAMSQYCEVHLFFTNG 262 Query: 263 DCHIPTAIWN-------------------TITEKSTNITSSNTTYSTH-PQYSLAKLLDF 302 + + I + + H + LL Sbjct: 263 CREYWGDLIDPRFMQRLSQMQRTGYHTALPIPVFHHTDNARFESSYDHEHLFEGHPLLSS 322 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD----TSDMRNTDILENKIPNIQKCFSD 358 D L ++ G + + + L R + + N+ + Sbjct: 323 WGKLGRDFLYLLTELEQLEGVRSIDAYTELTSQHLLSQVQARILHLEGKQGLNLAENDRS 382 Query: 359 VALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLE-------LT 407 + + E + L ++ K ++ AD + + Sbjct: 383 LTFHSCHSPMREVEVLHDYLLHLFQQDSTLTPKDIVVMVADIDKYTPYIQAVFGQYNQVA 442 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 + I IS + + LL I L+ P + F + L Sbjct: 443 QRQIPFSISDNRLSENDVLIASFIHLLALKESQFSAEDILALLDIPAIRNRF-QIELMEL 501 Query: 468 KNALELVALRGNKNSYDIMDLKS------LVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + VA G + + K + Sbjct: 502 EQIRHWVAHAGIRFGVEKEQGKQEKNTNSWQAGLERMLLGYAMREENGIWQGNLGFDPCY 561 Query: 522 LLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L + + I W + +T L + ++ + L + + Sbjct: 562 GLQGQLAGRLAEFIARLSAWYQFLQTPQPIEKWQQHLLTLLTDFFAEDETNITTLRYIQ- 620 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 +T+ + + I +T ++ D+++ L++ + K + L R + Sbjct: 621 -ETIVQMVTDIQQTHFDQPLSSEVVSDVLSALLEDDPNSMKFLAG-KVNFCTLLPMRSIP 678 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IY 699 F + L G+NEG +P+ N F +MQ D + E + Sbjct: 679 FKVVCLLGMNEGDYPRQQTPNSF--DLMQYDRRKADRFRRDDDCYLFLEALLSAQEAFYV 736 Query: 700 TRSLR------ENNIPTIASRWLQRLLVLGGTDFFDNLKKR------------------- 734 + R + S+ + L+ + + + R Sbjct: 737 SFVGRSIVDNQSKPPSVLVSQLIDYLVDKLSSAETQDWQARLIEQHPMTAFSPDNFRGEN 796 Query: 735 ---GQCYLDWTRK--LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 +L + + + A+ R +++ I P A + +R Sbjct: 797 GSFANQWLPLANIQKQERADFVQPIAQT-----VLAEDREIVLADLIAFIQHPVAFFFKR 851 Query: 790 ILK---LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE 846 L + + T G + + I +L+ K+ + L + + E Sbjct: 852 HLGVSFAKQEERIEDSENFTLDGLMRYQINEQLLYCDEEKSAEVLAQLKVKGMLPRGEFA 911 Query: 847 NLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + +L+ E V + + I L G D Sbjct: 912 QIFALQQQEDIAALKTTVADYLKQEA--------HVVEVDLTIPSGYGDIRLIGLLD 960 >gi|148239843|ref|YP_001225230.1| exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7803] gi|147848382|emb|CAK23933.1| Exodeoxyribonuclease V gamma chain [Synechococcus sp. WH 7803] Length = 1105 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 86/870 (9%), Positives = 211/870 (24%), Gaps = 52/870 (5%) Query: 40 NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNL 99 P V + V T + L G + + G + + A L L Sbjct: 25 PPGPFEQVEVVVNTWPTSRWLGERLASFNGISALV--RFPFPGSRLRQLAQAVLSKEPPL 82 Query: 100 NPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI 158 P + + + ++ + ++ + + LA+ LAD +D Sbjct: 83 EDPWRAERLVWTVIAVLPQLMQCEEAKPLRQWWNNQRTTSDALTREQWLLARQLADAVDD 142 Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 +DL G + + + ERL V + +R+ Sbjct: 143 YALYR--PQDLAGWLAGDDGDHLPAVLRWQPLLVRALAERLPCEPFGLQVQQAVDQLRS- 199 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + + + G + P L+ +A + L + Sbjct: 200 GQAPATPLPKRLRLFGLSNLAPVQIDLLQALAAVMQVELYLLTPCPDLWERSAQRRRRLG 259 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 N T+S L +L + + + + + + S+ Sbjct: 260 ENWTASPDGTWLIEAPKLEAILGRMGGEFQLLLEGSGDCLLSSTDQADLFADPVAMAASE 319 Query: 339 MRNTDILENKIPNIQ----------KCFSDVALIEADNEREEAISIAIALRMSLDE---- 384 R +LE + + + E + + + + Sbjct: 320 GRQGSLLEQLQRQLASSEHFPLQHTSADRSLLFMGCAGPWREVQLVRDQILHWMADDSTL 379 Query: 385 NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL------HSSILTSLLNAIF 438 + ++T D + + + L+ +LL Sbjct: 380 QPRDILVMTPDVERYAPLLASVLSDQDATGVDLPWRLTDRSQQNSPGLQQAFMTLLQLSA 439 Query: 439 KLNDFMAIATLVKHP-------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 + + L+ +P L + + ++ R ++ D L+ Sbjct: 440 ERLTATGLEALMSNPAFLDLQGLEAQEAMDITAALQRSGFRWGLDREERHGDDTHSLRWC 499 Query: 492 VLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + +L++ ++ + + + + + Sbjct: 500 LDRWLIGLILPDEPGLALGSCAPAVADLSLQQLERWWPLLDQIAQWIAQLRQSGSC---T 556 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 W + L ++ D L ++G + + E + ++ Sbjct: 557 VWVERLRRLLSDLFGDGGAWDWELQAIQQGLETWLIQAGHCELNLETTVVIAVLEEALSA 616 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 +S + + R + ++L GL+ +P+ + F Q Sbjct: 617 -----DSGRFGHRSGAMTVSALEPMRAIPHRVIVLMGLDAASFPRTRERPGFHLLERQRR 671 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI--ASRWLQRLLVLGGTDFFD 729 L ++ + + +HL+ + S R+ +Q+ L L + + Sbjct: 672 LGDPSSTDQDRYV-LLEALLSSRQHLLISWSSRDERRGDALPPCPPVQQWLNLLRQELSE 730 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + LD P Q R P Sbjct: 731 EAMAQVL-IEPPANPLDAANFIPAKTHALSCDRRLLQARQC---LDDPQGRAPGHAPLGL 786 Query: 790 ILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEI---NHLMKQIIDSHFEK 845 L + + P P + + ++ E ++ Sbjct: 787 ALPIHWPPEAPPPPAHATTLNSDQVEQLERWLQAPQRAWLRERGIEAGEWCDAVEDRAPL 846 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + + H E Sbjct: 847 ALPERTLRALITERLRDELDRLKTHPEARW 876 >gi|113460414|ref|YP_718476.1| DNA helicase/exodeoxyribonuclease V subunit gamma [Haemophilus somnus 129PT] gi|112822457|gb|ABI24546.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Haemophilus somnus 129PT] Length = 1144 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 87/763 (11%), Positives = 194/763 (25%), Gaps = 80/763 (10%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q ++ + E G + + + + D L + S Sbjct: 34 VILVQSGGMAQWIQWQIAEKKGISANLS---FPMPASFIWQLYVDNLPQVTASSQFSKEN 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163 L +I + + L S S LA +A++ D Sbjct: 91 MTWRLMEIIPHYID--QPEFYILRQYLQQSYQSSQQRYYQLASKIAELFDQYLVYRPEWI 148 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKI-----ASKY--WTERL-----------VELNAS 205 WE ++ + ++ F+ ++ W L + N Sbjct: 149 ISWEQNKGVEIIQQIQYYQKNL-FVSESCFSQVEQHIVWQGILWRALVCSVPKETQKNVL 207 Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 + ++ A K I + G + +S ++ H + + Sbjct: 208 HRAHLHLLFLKHIAGEKPKNLPTRIFVFGISALPKVHLDTLSALSQHCDVHLFFNNACRE 267 Query: 266 IPTAI-----WNTITEKSTNITSSNTTYST----------H--------------PQYSL 296 I W + + H Q Sbjct: 268 YWGDIIDQSHWQRLKVRERISWQDFQQPQNTQAWLSDEQIHTFEQNVFEQIYDEKLQVGN 327 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNIQKC 355 L + + R+ + L + + +S+ L + ++K N+ + Sbjct: 328 PLLSSWGKLGRDYLYLLTELEANEINAYVELSEKTLLSQVQALILDLVPSKHKFLNLAEN 387 Query: 356 FSDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLEL---TR 408 + + E ++ L + D K ++ AD + + Sbjct: 388 DRSLTFHSCYSPIREVQALQDYLLHLFNQAQDLTPKDVVVMVADIDKYAPYIQAVFSQGE 447 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSR 466 I I+ S LLN L + T + HP+ + F + L++ Sbjct: 448 HYIPYSIADSKLSENDPLVSAFLQLLNLKESLFSAEEVLTFLDHPVIRQSFNITLEDLAQ 507 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT----HVPHWQSRLSEEDKELAVL 522 ++ +E +R Y L++ + ++ H + + L Sbjct: 508 IRHWVEHSGIRFGLEKYPQQSLQNYNAWQAGLERMLLGFAMREEHGLWLDTLGFDDTYGL 567 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + + I W + + + + ++ Sbjct: 568 KGQLVGYLKDFITRLYQWHQFLQADHVIEKWEEHLIELVSSFF-VVDGMDIPQQYKTTFN 626 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTLFILGTLESRLL 639 L ++ E ++I + + L R + Sbjct: 627 YLIDTIQQLTELILDSSFQQEISAEVIYEVFVERLKDIPNSLKFLMGKVTFCTLLPMRSI 686 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-I 698 F + L G+N+G +P+ N F + E + Sbjct: 687 PFKVVCLLGMNDGDYPRQQTPNSFDLMQYHRKKGDRFRRDDDRY--LFLEALISAQQYFY 744 Query: 699 YTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + R ++ S + +LL + +GQ L Sbjct: 745 VSYIGRSIIDDSEREPSVLVTQLLDYIAENINAQGDLKGQDIL 787 >gi|194336514|ref|YP_002018308.1| exodeoxyribonuclease V, gamma subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194308991|gb|ACF43691.1| exodeoxyribonuclease V, gamma subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 1068 Score = 101 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 102/945 (10%), Positives = 239/945 (25%), Gaps = 103/945 (10%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L TL R +P I V ++ + L E G + + Sbjct: 13 VLVDTLAAALREPLASPFK--QEVIVVQSRGMQRWLSMELASRFGVWANGH---YPFPNA 67 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + ++ L + + RL+ +L D L+ Sbjct: 68 MVKELFGALFSEKPDTSSFAPEVMSWRIMRLLP----ELLDTEPFGTLRRYLADDPDGLK 123 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L++ +AD D L + W + A + W L A Sbjct: 124 LFQLSEKIADTFDQYT-----------LFRPEMLSHWEAGES--QPAGEEWQPVLWRKLA 170 Query: 205 SSPVGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 ++ + L + I + G + ++S VA ++ Sbjct: 171 DGEGMHRGRMKELFCRQLSPLSPEVKEIPERITLFGISYLPKFHLDMLSAVARVTEVNLI 230 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP----QYSLAKLLDFLDIKREDVKRLG 314 L I +P + + + I D Sbjct: 231 LLSPTREYWGDILARKAIVRLPEEERALRMEGNPLLASLGRIGRDFSDMIIDMSDSAFHQ 290 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 + G ++ + + + + + + + + E + Sbjct: 291 EERYDDPGEECLLHGLQSDILNLSGTGEEGEQRPLDPLDR---SLRIHSCHSPLREIEVL 347 Query: 375 AIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTL 425 + L+E+ + ++T D + G++ I+ + Sbjct: 348 YDNILAMLEESPGLTLRDIVVMTPDIESYSPYISTVFGAGGNGAGLHYSIADRRMMHEGE 407 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLA-KFGFPEKYLSRAKNALELVALRGNKNSYD 484 +S + LL + L+ P + E Sbjct: 408 IASAVLKLLALPASRLAASELFDLLASPPVSRRFLVESDELDVIREWIEKTGIRWGMDEG 467 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEED---------KELAVLLVDHILQCITPLV 535 K+L R + K + +E+ +LA + + + + Sbjct: 468 DRTAKALPSYRENSWKAGLDRLLLGYAMPDENQLFNGILPYDDLAGSAAETLGKFAGFIT 527 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIE-T 594 + + N ++ +W L + L + E T Sbjct: 528 SVEAFVNRMERPCTLEEWRSRFQALLADFILPSSVSEREFATIAALGEKLGEVAAAAEFT 587 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 A + W+ L + + L R + F ++L G+N+ + Sbjct: 588 QEVTPAVMLSWLRAHLELQEQGLGFMTG----GITFCAMLPMRSIPFRVVVLIGMNDSAF 643 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIA 712 P+ + F + ++ + + + + L + + +N Sbjct: 644 PRQSRAPGFDLIAREPQKGDRSL-RNEDRYLFLESILSARDLLYISYIGQSIRDNSELPP 702 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL--------------------------- 745 S + LL F + L L Sbjct: 703 SVLVSELLDAVRRGFSLPDGDSVEKQLVVRHPLQAFNRAYYSAGSPLFSYSAENFHALVE 762 Query: 746 -DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKK 801 + P + +T S ++ + ++P + + L + + + Sbjct: 763 KERPAAPSRPFMSVPLDEPPEEWKTVSLKQLLRFYDNPAGFFLEQRLGIRLEGMVEPLED 822 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID-IIWRHLF 860 G +++ EL++ + + + S + LPP + + Sbjct: 823 REPFAVEGLALYSLKQELLEIVLGGGNTL---ELLPLYRS---RGVLPPALHGELLFRKI 876 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 F ++ + + P ++ ++ G LTG R+ Sbjct: 877 LDEVQQFAATVQEKTAGAGALA---PLEVDLQLGGFRLTGQLVRV 918 >gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] Length = 1191 Score = 101 bits (250), Expect = 1e-18, Method: Composition-based stats. Identities = 77/792 (9%), Positives = 182/792 (22%), Gaps = 54/792 (6%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPA 241 + L+ W ++ + + + + G AG Sbjct: 393 QETRNLLRDPGAAWVLYKLDGG-IDHLLLDEVQDNSGLQWEIAGALTSEFFAGEGAWDMG 451 Query: 242 TARL-MSTVANHPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKL 299 + V ++ G + + S+ + Sbjct: 452 PRPRTIFAVGDYKQSIYGFQGAQPEEFHRWRHEFASRVRNAGLLWRDPELNVSFRSVPPV 511 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 L F+D + + + + + + + + Sbjct: 512 LSFVDAVFSQPLAAHGLLQDDEKTLRPHVSARPGQGGRVELWPLVPVVQGEDDDEGLTPW 571 Query: 360 ALIEADN-----EREEAISIAIALRM----------SLDENKKKSALITADRNLARRVKL 404 A+ + A ++A + + L+ R + Sbjct: 572 RAPSANTGQRSAPQRLAEALAEWIDQQIGRPPLPGQAPLTAGDVLILVPRRSPFLRSLIR 631 Query: 405 ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 L + + + L+ + L +L A+ D + +A+++ PL Sbjct: 632 ALKSRNVPVATLVRVGLTQQVAVRDLMTLCAALLLPQDDLTLASVLTSPLGGLTDDSLMA 691 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +N + + ++ + + + + + + LA L Sbjct: 692 LATRNGTTHALGPKGQPLWTVLRERHREREDWRAAWEMLSTLYVRVDYASPYRLLAETLG 751 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 H + L+ + + L E L Sbjct: 752 QHGGRTRLLRRLGPEAAEPVDELLTAALRYEGLHPPSLQGFLHWLEASEITSKREAESEL 811 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 ++ + ++A + D ++ G + + L + + + T Sbjct: 812 GAVRVMTVHGSKGLQARLVVMPDTTSKPPPGSDFLWEEAGALELPLWVPKKDMGTDVTTA 871 Query: 645 --------ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 N ++ T + +L + Q F R Sbjct: 872 LSERDAEKARAESNRLLYVALTRASDWLVICGAGAKREPADTSWYRQCEAGFRQLANAR- 930 Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 ++ R + F + C +P Sbjct: 931 ------SEPMDLGWEGERLVLEEARTLAPVAFQSGSAEPPCATLPDWMGRAPDWKPVITP 984 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 + P +E +L AR L+L RGT+ H ++ Sbjct: 985 HEDAMTRPLAPSRPDGAEFGELPA------ARSPLELLAGRPTPVREQAMRRGTMIHRLL 1038 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 L + + + + + + L H + Sbjct: 1039 QLLPETLPAEREAVALRWLSRRA----------LGLTEPEIKRLAEQVLGVLSHPDLAPL 1088 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID-- 934 P + G DR+ + G + + DYKT NP + + Sbjct: 1089 FALGSRAEQPISGVSAGRVVL--GQVDRL-RIGDGQIWVCDYKTNRNPHLRAERTPVAYL 1145 Query: 935 PQLSLEAAALKA 946 Q++ A L Sbjct: 1146 RQMAAYRAVLAQ 1157 >gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 738 Score = 101 bits (250), Expect = 1e-18, Method: Composition-based stats. Identities = 75/704 (10%), Positives = 183/704 (25%), Gaps = 116/704 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102 + + T +A +E+ + + + I + + + + L Sbjct: 53 SGILAVTFTNKAAKEMLARITAMLPINPRGM-WIGTFHGLCHRMLRSHYQDA-GLPQAFQ 110 Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + +L + R++ DL + P I AK + Sbjct: 111 ILDSADQLALIKRILK-----------DLSADDKKFPPRQVQWFINNAKESG-----LRA 154 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE- 220 +D+ + +F + + +R + A + + Sbjct: 155 AYVTPDDV-------FSRH---MLEF----YQAYEQRCHKEGAVDFAELLLRSYELLSRN 200 Query: 221 ----HLMKGTKGPIIIAGSTGSIPATARLMSTVANH--PNGAIVLPGLDCHIPTAIWNTI 274 + I++ + P + + +A A+V D + Sbjct: 201 EILCQHYRERFNHILVDEFQDTNPLQYKWLKLLAGTGTKETAVVFAVGDDDQSIYAFRGA 260 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 + + + + L+ + + +N + + Sbjct: 261 YSGNMRDFERDFGITK---------IIKLEQNYRSHGNILDAANALIENN---------- 301 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 ++ L + + + + A N+ +EA I ++ E + AL Sbjct: 302 -------SERLGKNLWTAEGRGEPLRVYNAPNDFDEAAFIVEEVKTLHAEEGIALSEIAL 354 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L I + G+ + L I +D A+ ++ Sbjct: 355 LYRSNAQSRVLEHSLFNAAIPYRVYGGMRFFDRQEIKHALAYLRLIANPDDDGALLRVIN 414 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P G + K H + Sbjct: 415 FPARGIG------------------------------ARSLEQLQDDAKAQGHSLWAAAL 444 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + + L+ + V +CG L + + + + + + Sbjct: 445 QKCGGEVSLLQESHKSLKGVAKFVFLIMTMRQSCGELLLPQIVEYMLIHSELLVHYAKER 504 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + E + +++ S + E G+ + + L ++ Sbjct: 505 ESSERLENLNELINAATSFVHEIGND------SLTEFLAHASLEAGEHQAGSGRDALQLM 558 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F T+ L GL EG++P + N + L + + F Sbjct: 559 TVHAAKGLEFHTVFLSGLEEGLFPHENSLNESNGIAEERRLMYVAMTRARRRLYLSFTQ- 617 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 +R L IASR+L + + Sbjct: 618 --------SRMLHGQTRYNIASRFLDEIPQACLKWLQAAPRNPD 653 >gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 911 Score = 101 bits (250), Expect = 1e-18, Method: Composition-based stats. Identities = 81/857 (9%), Positives = 201/857 (23%), Gaps = 134/857 (15%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATAR 244 +FL+ + + L + + + +I+ A Sbjct: 182 EFLEKL-RRYEASLDQHKRLTFNRMVQLAVENLQHRPEVAEHVKYLIVDEYQDINHAQDE 240 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ + G + D W E+ ++ Sbjct: 241 LIRLIGL---GGSIFVVGDPRQTIYQWRGSDEQYFEEFTTRYP----------------- 280 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 V+ + + D + + +++ L E Sbjct: 281 ---------EAVTIHITENRRSTVAVIETANGFSDTFEDQHYDHMDPVRREQGGAYLAEM 331 Query: 365 DNEREEAISIAIALRMSLDEN---KKKSALITADRNLARR-VKLELTRFGINIDISAGIP 420 ++ E IA ++ + E AL+ + + E R I + + Sbjct: 332 QSDITEVDWIADQIQALVREEKCSYSDIALLFRSVSTSAPPFIDEFRRRDIPFVVGGKVG 391 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L + L +++ + + + R ++ LE + N+ Sbjct: 392 LFRRPEILGIGQLFAWLWEDGFWQ-----------QGKWSRLPALRGEDLLEEAVVNWNQ 440 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 D+ + V + + + + L + + Sbjct: 441 GIPDL-------------ALEASDVLNLRRWKDSVLNSTYDNFSQVFGELLVLLGYHGLD 487 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + +++ + W + Sbjct: 488 PDDVRHAVIMANLGRFNTLLTDYETAIMLGGRRRNWETDL-------------------K 528 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 +++ E I + ++ +S+ L + + + + +P + Sbjct: 529 GLCWYLNTYASSKYEEQTGDDIGGVDAVQLVTIHQSKGLEWPLVFVPCMVRQRFPSSMVG 588 Query: 661 NPFLSRVMQSDLNLKTAE-KYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQR 718 + ++ E + + + + + + N S ++ Sbjct: 589 KGRTWLISPELFDVAKYEGDLESERKLMYVALTRAKDVAVVSYFTSMNGRRKGRSAFVGD 648 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + L + D RT+S EI Sbjct: 649 IEDLPHVEPLSQRDTLPDHDYATGGAADE-------------------LRTFSAGEIVDY 689 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 Y R I + D G H + E N++ + + Sbjct: 690 GKCGYFYRLRHIWGYEP-----GLTDYLGYGQTLHFCLREAADLMKNEDLSPMIA-VATA 743 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 +D +F + + F E I + ++ + Sbjct: 744 VDRNFYMPFMTEGRMEKIKRAAKNHLMRFAEKYRDDMLRIR----EVETRVEFPVQNAIV 799 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G D I V++ DYKT D Q+ L G + V+ Sbjct: 800 AGKVDVILHDGD-AVEVRDYKTSDTATTPEDS---ALQVQLY----TRGLC--VLGETVS 849 Query: 959 NLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKS 1018 + ++ ++ + E + + +G+ F + Sbjct: 850 -------RGSVAFLEEAAVDAVDVTEQAVAGTMARVEEDIGRILSGD--FTACPGA---V 897 Query: 1019 NIQSEYDHLARVAEWRE 1035 + +Y + R WR Sbjct: 898 CERCDYQGICR---WRA 911 >gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040] gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040] Length = 1121 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 83/887 (9%), Positives = 223/887 (25%), Gaps = 114/887 (12%) Query: 112 LARLILIWRNKLPDIIK----DLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 LAR+ + + LP + + P S I L ++ ++D +E + E Sbjct: 256 LARITAVTPDVLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLMDQLEPFMARVE 315 Query: 168 DLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHL 222 + M + DF ++ + R V + L Sbjct: 316 AARPKRLALDAMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAW 375 Query: 223 MKGTKG----PIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTA 269 + I++ + + P ++ +A + D Sbjct: 376 VLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIY 435 Query: 270 IWNTITEKSTNITSSNTTYS--THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + + + L F + L +V + R+ Sbjct: 436 SFQGADPDAFDRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVFDGEHRAGFA 495 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDV--ALIEADNEREEAISIAIALRMSLDE- 384 + SD+ L + ++ + R ++ +A + + E Sbjct: 496 DDAKHQAFKSDLPGRVDLWPLVEKTDDEEERDWTDPVDRPSPRHHSVILAERIANHIKEM 555 Query: 385 -----------------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 L+ +L + G+ I + + + Sbjct: 556 IAQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEIIRACKAAGLPIAGADRLKV 615 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 L + +LL + D +++A +K P+ + + + + + E+ + Sbjct: 616 GAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRS-EMHLWPALRA 674 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + +L+ + Q + R+ A +L + + + Sbjct: 675 RSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTEAEDGINALLSQA 734 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + +W + + + + + Sbjct: 735 LAYERT------------------EVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVH 776 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 + ++ ++ T + + + + GT R+ + + Sbjct: 777 GSKGLEAPIVILPDTTKRRPSPAAEVMEVDGTPLWRM--------------------SSD 816 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 + + + + + + + LI + + + ++ + Sbjct: 817 QMPPAMDAARVFAQEKQANERLRLLYVALTRAEKWLIVAGAGDLDKGGDSWYQRVEAAMK 876 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G +D G + + + + P + ++ + Sbjct: 877 TMGALPYDAPGGEGLRWAHGDWEAPVFVPSDLTEEDEITLPEVFRRAAPAYVAPAATLRP 936 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 + + L + D RGT H ++ L K + + Sbjct: 937 SEDLGGAKAL---PGDSGLSEEDAKARGTALHLLLEHLPKLPEEDWDNRAEAIAQHEDWK 993 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 E + L ++ +P + + L G Sbjct: 994 ALLAE-----------------ARQVLCSDDCADIFAPGTLAEVPVSADL--GTVRLHGI 1034 Query: 902 ADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 DR+ + V D+K+ E + + Q+ AL+ Sbjct: 1035 IDRLVITPD-RVLAVDFKSNAVVPQSAEACPEGLLRQMGAYDVALRQ 1080 >gi|251773028|gb|EES53584.1| putative ATP-dependent DNA helicase, UvrD/REP family [Leptospirillum ferrodiazotrophum] Length = 796 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 82/695 (11%), Positives = 175/695 (25%), Gaps = 129/695 (18%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP--PVSNI 106 + T++A +EL LP + + + L L P VS+ Sbjct: 70 VATFTRKAARELVERISHRL--PDARLPYVGTFHSLSARLLR-RLADRAGLPPDFTVSDA 126 Query: 107 QRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEEK 164 L R I+ + + +S + LA+ L Sbjct: 127 GDQKALVREIMRRHKVSEEDVAPQEILRQISQWKNARQTPGPELARRLFG---------- 176 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219 + F+ + + E L + + L+ Sbjct: 177 -------------------SRRFMATCYEEYEEGLRKNRSLDYDDLLCRLVGLLSSQPDV 217 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 ++ I++ + P L+ ++ V+ D + Sbjct: 218 ATALRQEFHHILVDEYQDTNPLQEELIRLLSRERRNVTVV--GDDDQSIYRFRGAEVAHI 275 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 S H + LL S + Sbjct: 276 QRFS------DHYPGAGRVLLSR--------------------NYRSTSAIVDSATSVIR 309 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKK--SALITADRN 397 +N + ++ S V L+E +E EA +A LR + + +A++ Sbjct: 310 KNDGRYMKTVTAVRGGGSPVLLMEFPDEEAEARGVAGILREWIAGGGRPSRAAVLFRTNA 369 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + ++ + G+ G L + + L + L + D +++A + P Sbjct: 370 QSLPLEKAMAAAGVPFFRPGGGGLLESREARDLVAYLRLLVNPFDRLSLARIFNVPPRGQ 429 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G A + P E Sbjct: 430 GDEAVEELSALSEAH---------------------------------PELPVAELLERL 456 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL--DEHRKLPNL 575 + + + L + LS+ D + + DE + L Sbjct: 457 AERGGRREPLGKLSALLREGSEAASRGDVPLSLLDRVVAATGYREWLTREKDEETRRRRL 516 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 EE + L+ F + + + A + P E + ++ + Sbjct: 517 ETLEEFRGLAGDFVREEDREASGPLAA------FLEDLTLSREGPDAEGRERVGLMTIHQ 570 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 S+ L FD +++ GL + + +S +++ + + R Sbjct: 571 SKGLEFDCVVVAGLEDQLL------------PFRSFAGGRSSTDIEEERRLFYVAMTRAR 618 Query: 696 H-LIYTRSLREN----NIPTIASRWLQRLLVLGGT 725 L T + S +L+ + Sbjct: 619 ERLHLTWARTRRIYGKTQSFGPSPFLRDIPGELSA 653 >gi|315655323|ref|ZP_07908223.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC 51333] gi|315656764|ref|ZP_07909651.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315490263|gb|EFU79888.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC 51333] gi|315492719|gb|EFU82323.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 285 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 28/253 (11%) Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P P PP S S KQ P + + KL RG+L H ++ Sbjct: 8 PAPRPP------ALSASSAKQFQQCPLKWRFKYVDKLPEPQSP-----AALRGSLVHKVL 56 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEH 870 ++ + E L + + ++ ++ Sbjct: 57 EDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSL 116 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E+ + + + + + S G+ L GF DR++ +G V I DYKTG P Sbjct: 117 EDPRR--LHPSGRELGVETVL-SSGLRLRGFIDRVEQAGNGDVRIIDYKTGKAPDMRFTG 173 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ L A + ++ ++ L ++ +T D + D+ + + Sbjct: 174 E-YVFQMRLYALLYREQ--YRVTPKRT-QLLFLG----GNPQVLTFDPTDANVDDFTAEI 225 Query: 991 LKNLIEIVTLLQN 1003 +I LQ Sbjct: 226 NALWSDIAAHLQA 238 >gi|320539713|ref|ZP_08039377.1| exonuclease V (RecBCD complex), gamma chain [Serratia symbiotica str. Tucson] gi|320030325|gb|EFW12340.1| exonuclease V (RecBCD complex), gamma chain [Serratia symbiotica str. Tucson] Length = 1125 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 116/983 (11%), Positives = 251/983 (25%), Gaps = 136/983 (13%) Query: 16 PFFREMIPALLNGT-LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI 74 + + AL+ L + FR + + V + Q L+ + E G + I Sbjct: 11 DLLKTLTSALIARDPLADPFRQE----------VVLVQSPGMAQWLQMQLAEQFGIAANI 60 Query: 75 LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 L + +L S +L L+ +L + + Sbjct: 61 A---FPLPATFIWQMFTHVLPDIPKESAFSKDAMTWKLMWLLP----ELLTLPAFAPLQH 113 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY 194 L+ L +AD+ D KW L + + + A + Sbjct: 114 YLTDDGDKRKIHQLVGRVADLFDQYLVYRPKW--LESWQRGERIDGLAEAQQWQAPLWAR 171 Query: 195 WTERLVELNASSPVGYQIALMRAE------AEHLMKGTKGPIIIAGSTGSIPATARLMST 248 E EL P ++ L AEH G + I G + PA + Sbjct: 172 LVEYTRELGQ--PEWHRANLYSRFISTLDNAEHCPPGLPQRVFICGISALPPAYLDALQA 229 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---------- 298 + H + ++ + I + + T Q + Sbjct: 230 LGRHIDIHLMFTNPCRYYWGDIQDYAFLARLQSRKRRHYHQTREQNLFREPNQAVHLFNS 289 Query: 299 ---------LLDFLDIKREDVKRLGN---------------VSNEMYGRSMVISKSFLPP 334 LL D L + N ++ + + Sbjct: 290 EGQQQLGNPLLASWGKLGRDYLYLLSQLEGAQEVDAFVDIPADNMLHAIQRDMLELEDHA 349 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL----RMSLDENKKKSA 390 T ++ ++L + + E + L + + Sbjct: 350 VIGITPETLENSVTKRRLEPEDRSLSLHLCHSPQREVEVLHDQLLTMLAEDPELTPRDII 409 Query: 391 LITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 ++ AD + + + IS SLL+ Sbjct: 410 VMVADIDSYTPYIQAVFGNASAECYLPFAISDRKARQAHPALQAFISLLDLPQSRFTAEQ 469 Query: 446 IATLVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRI 496 + L++ P +F E+ L + + +R + ++ +L + Sbjct: 470 VLALLEVPALAARFAIGEEGLRLLRYWVGESGVRWGLDDDNVRELDLPATGQHTWRFGIT 529 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTK 555 + + + L + + L+ + + S+ +W Sbjct: 530 RMLLGYAMDSNAGDWQGILPYDESSGLAAELAGQLADLLNSLGCWRQWLSEMRSLEEWLP 589 Query: 556 LTVTCL-QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 L L D ++ E++ + + + D + +D Sbjct: 590 LCRQLLYTFFVQDGETEVVLALIEQQWQQVIRF---GLAARYPNAVPLSILRDDLVAHLD 646 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + + + R + F + L G+N+GV+P+ F Q Sbjct: 647 QARISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRALPLLGFDLMAQQPKCGD 705 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGT------- 725 ++ + + + L + R +N S + LL Sbjct: 706 RSRRDDDRYL-FLEAILSAQQRLYISFIGRSIQDNRERYPSVLVTELLEYLEQSYCLPGD 764 Query: 726 ---DFFDNLKKRGQCYLDW---------------------TRKLDYTTKQPHYKRPKPFP 761 D + ++ G+ L W L P P Sbjct: 765 EDLDADGSAQRVGEYLLKWHARMPFAVENFLPGSEQQSYAAEWLPAADGHGTAPPPFNQP 824 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIIT 817 L A + S ++++ P + + L L+ ++P D + + Sbjct: 825 LLPAGEQQISLDDLRRFYRHPIRAFFQLRLGVSFTLEETELPNEEPFTLDNLSRYELNSQ 884 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 L + + + E I+ + E + Sbjct: 885 LLNTLIEGDSPSCLFQRVCAAG------ELPFGAFGEIYWQKQQEEMIELAEKVRAER-- 936 Query: 878 IEKIFVNIPAKMAIESIGIHLTG 900 V+ ++ IE G+ ++G Sbjct: 937 ----GVDHSLELDIEIDGVSISG 955 >gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] Length = 1150 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 91/824 (11%), Positives = 193/824 (23%), Gaps = 101/824 (12%) Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKG 228 + + A + + W +R + + + Sbjct: 336 LAEYLVPALTLGRNFALAWDDRKRREGLIDFDDQIRRASQLLKNSALADWIRYKLDRQFD 395 Query: 229 PIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + + A ++ + + D + + ++ Sbjct: 396 HILVDEAQDTNQAQWDIIRALTGDFFTGFGQREDKLRTIFVVGDYKQAIFGFQGTSPQNF 455 Query: 280 NITSSNTTYSTHPQYSLA---------------KLLDFLDIKREDVKRLGNVSNEMYGRS 324 + A + L L + R + + Sbjct: 456 AAQKEIYRREIDAAIANAEALARDTRSKPVVDLRALQDLGLDRSYRTAQPVLDFVDHAIE 515 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE--------REEAISIAI 376 + S +D D + + + +E R A IA Sbjct: 516 AIGHTSIGLEREADRHEGDTRPGYVALWEPVVAGAEDDGEPSEEGWLPGPERAMADRIAD 575 Query: 377 ALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 +R LD+ L+ R LA + L G+ + + L Sbjct: 576 QVREWLDKGHPLAKGTKRNAGPGDIMVLVRKRRELAGLIVARLHARGVPVAGVDRLRLGA 635 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 L L + L + D +++A L+ PL + + + + K+ + Sbjct: 636 PLAVKDLMAALRFAAQPLDDLSLANLLVSPLGGWSQEDLLEHGYRPDKVRLWDHLRKSEH 695 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + L ++ + + + LV + Sbjct: 696 PFVVETVERLRQLLQRVDYELPEALLHWILTGPWRGRAKLVARL---------------G 740 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 N I + + WF+ L + + Sbjct: 741 REANDPIDELVNAAFAYSATDTASVQGFIQ--WFDAGEGELKREPGGDDGLVRVMTVHGS 798 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + ++ T P ++ L + + + L +E P A+ Sbjct: 799 KGLQAPIVILADATGNPDASRTGGLELQEDTSGKSVPIPALP---KDEKHGPVAEAEQAA 855 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + + L + A A G R L W RL L Sbjct: 856 KAAEREEHWRLLYVAMTRAEEALYVGGALGQREL---------KKGPAEDSWYARLEPLF 906 Query: 724 GTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 D + + + ++ P QP + L Sbjct: 907 LDDALADPIWGARRERGALPEPIVSSGDVDPPAQINLPDWATQPIGPEPKPPRPLAPSS- 965 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A + RG L H+++ L + + Q Sbjct: 966 ---AGEEQGASPPLPPEIAAQAARRGVLMHSLLERLPDVTPAEREVRARAWLAQQAPEIA 1022 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFAD 903 + E + + L+ +P + + G AD Sbjct: 1023 DDERDEMLCRAL----------AVLDEPGFAPIFAPDALAEVPLAAVVAGQ--VIAGTAD 1070 Query: 904 RIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALK 945 R+ + V + D+KT P I Q++ AAL+ Sbjct: 1071 RLLVTDD-EVLVVDFKTARRPPAAIEDIPASIIRQMAAYVAALE 1113 >gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 721 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 77/739 (10%), Positives = 198/739 (26%), Gaps = 109/739 (14%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 + + + + + + T +A E+++ E+T I + + Sbjct: 31 RVVTQRIAHLIDEGIPPSQILAVTFTNKAASEMQNRVKELTFHSVL----ISTFHSLGAR 86 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + + R + + + +++L+ P + Sbjct: 87 ILRESIH-------AFPHYSRNFVIYDE-EDVLKVIKNCMEELHISDKKLEPKAFK---- 134 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAADFLKIASKYWTERLVELNASS 206 +I + K + ++ E + + R+ E NA Sbjct: 135 ------HLISQAKNALKNPDQINDFDAESNAELHFQK-------VYAAYQRRMSEYNALD 181 Query: 207 PVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 +R E+ + ++I + A +++ + + Sbjct: 182 FDDLLYLTVRLFREYPEILAYYQNRWQFLLIDEYQDTNDAQYAMVTHLVE--KTHNLFVV 239 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D W + + + + L+ + + SN + Sbjct: 240 GDPDQSIYSWRGAKIYNILNFEKDFPGAQ---------VIHLEQNYRSRSNILDASNALI 290 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + + L+ + + + + L A+ ER EA IA ++ Sbjct: 291 DNNQ-----------------NRLKKSLWSDRGAGEKIKLFPAETERFEAGFIAERIQNY 333 Query: 382 LDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 ++ + + +R + I I G+ + + L + Sbjct: 334 HEQGIPYNEMVVFYRTNFQSRVFEDTFLHNDIPYVIVGGVSFYQRKEIKDILAFLRIANE 393 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 +D+++ A + P G LE + + KN I+ ++ Sbjct: 394 ASDYVSFARTINLPKRGIGDTT---------LEKIRVHAQKNRMSILSFAQALI------ 438 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + +L+++ +E + I +I + + + Sbjct: 439 --EQQPLPFIFKLNQKQQEGLKEYLQVI-----------ARLQEISAKGTIQEGVEAAIK 485 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + L + + + L S ++ + +A + L T+ Sbjct: 486 ESGYLGLLKEDAETFQDRKANLEELVSKANEWETSTPEPSLSA-----FLEELSLKSTID 540 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + ++ + L F + L G+ E ++P ++ F + + L + Sbjct: 541 DTHHSKNRVNLMTIHNGKGLEFTAVFLAGMEEDLFPHANSRGNFDALEEERRLCYVGMTR 600 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 F R L ASR+L + L +R Y Sbjct: 601 AKEYLYLTFARN---------RHLWGTIRSQRASRFLSEIPPNFIEKII--LNRRPDSYR 649 Query: 740 DWTRKLDYTTKQPHYKRPK 758 + + P+ Sbjct: 650 PPIPEYKMVEPVIAVEEPE 668 >gi|145637245|ref|ZP_01792906.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittHH] gi|145269497|gb|EDK09439.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae PittHH] Length = 1128 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 114/975 (11%), Positives = 241/975 (24%), Gaps = 140/975 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + +Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQSNTKWQGELWRSLVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLELLDIPAVRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHERLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTNDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL---------LVLGGTDFFDNLK 732 E R + R +N P S + +L ++ Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQSENENVLTVIEHPM 781 Query: 733 KRGQC-------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 W + + + + + + Sbjct: 782 TAFSPDNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDALVSFV 841 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQ 837 +P + + L + F ++ D ++ ++ +L +Q Sbjct: 842 ENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDEQ 890 Query: 838 IIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE--- 892 +F + + + I + LE +EKI E +I +A++ Sbjct: 891 NFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQN 950 Query: 893 -SIGIHLTGFADRID 906 + I L G+ D + Sbjct: 951 ENQKIRLFGYMDALF 965 >gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1234 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 102/839 (12%), Positives = 219/839 (26%), Gaps = 124/839 (14%) Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITE 276 EA + +++ + ++ V + P + D + Sbjct: 392 EAARFYQEQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEP 451 Query: 277 KSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 T S D LD K+L ++ Sbjct: 452 LLFLSKYKRFTESGEGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAE 510 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--------- 380 L D T+ I N ++ + E + + EA +IA +R Sbjct: 511 LKLGAAYPDNDETETELLLIDNAEETDAGEEAEELETVQFEAKAIAKEIRKLISSPFKVY 570 Query: 381 ------SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + + ++ A ++ EL GI + + + ++ S+L Sbjct: 571 DGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTSGYFEAVEVAVALSVL 630 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 I + +A++++ P+ E L R +N L Sbjct: 631 KVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQK 690 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 H+ W++ + V + + + K + D Sbjct: 691 LETFYG---HLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRA 747 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + R + + + + S+ + + ++ + ++ Sbjct: 748 RQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAA 807 Query: 615 GETVKPKIEK------------------SSTLFILGT--------------LESRLLNFD 642 G + L I L S L Sbjct: 808 GLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVL 867 Query: 643 TLILGGLNEGVWPKNTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGT 694 + L E ++ + K+ + + Q+D L ++Y + DF Sbjct: 868 YVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARH 927 Query: 695 RHLIYTR---SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 R + + +I +R+ R+ + D+L++R + + + Sbjct: 928 RDMEVLAENGAATHADISGHPARFAVRM-IHSYDLLDDDLEERTEEKSERLEAIRKGEPV 986 Query: 752 P-----------HYKRPKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILK 792 P P + S SEIK+ P IL Sbjct: 987 PGTFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILY 1046 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 KK ++GT H ++ + I E + ++ + E I Sbjct: 1047 RRPAFMMKKGLTAAEKGTAMHTVMQHIPLTHI-PTIEEAEQTVHKLYEKELLTEEQKTAI 1105 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGF 901 D +I F + +P +A+ + + G Sbjct: 1106 D------IEEIVQFFHTEIGGQLIGAKWKDREVPFSLALPAKEIYPDAQEADEPLLVQGI 1159 Query: 902 ADRIDLLKSGFVDITDYKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948 D + + G + + DYK+ G P + + Q+ L A++ + Sbjct: 1160 IDCLYETEDG-LYLLDYKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1214 >gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Synergistetes bacterium SGP1] Length = 1213 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 85/840 (10%), Positives = 189/840 (22%), Gaps = 60/840 (7%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 F A W S + A + T I++ + P Sbjct: 376 ALLRFCAAAWGLWDAERRRRGLLSFSDMILQARAAVESGKAQRTFRHILVDEFQDTDPLQ 435 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA---KL 299 ++ T+ H + D + S L Sbjct: 436 FGMIETL-RHEGVRSLFAVGDPKQSIYGFRHAEPSLFAEAIGRADARVTLDVSFRTRGAL 494 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--------N 351 L L+ + R G ++E R S T + Sbjct: 495 LTRLNDLFAHIWRDGLGTSEAMSRLEFEPLSPAGSGERGAGTTAPFSVLLAVKEGRAVLG 554 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDE-NKKKSALITADRNLARRVKLELTRFG 410 ++ + EE ++ +L A++ R ++ G Sbjct: 555 ARRRLAGALARRVARWVEEGRTVWDKGLNALRPLRYGDFAVLARTRGSHELLEDAFAAAG 614 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + + + + LL A D A+ + P + E Sbjct: 615 VPAVQDRSRDYFSRGEVTDVICLLRAAEDWEDGAAVFGWLMSPFSGVPIDEARR------ 668 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 R + + + + R + + +D + Sbjct: 669 ---CLERIGGTLRTGRGVMEALKEALPDAAARLERTSLIGRRNG--PAAILSPLDRDRRW 723 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + L + + +++ ++ L + + + + Sbjct: 724 LANLPEKERLRALRNVRRAVAIARSFQRGSASSLAACADWMDRALRRGVDMEE-PAWHGE 782 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + +A + ++ I + + LG + L + + Sbjct: 783 GVNAVLLSTVHASKGLEYPVVAIFDTAKRRRPRTLCPSRTLGAAFADLPDELSASRPSAR 842 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS----LREN 706 E + L + + A + + +E Sbjct: 843 EPLSMAWERA-------------LTRQGEREEDLRLLYVAATRAQDSLIHCGLVTFGKEG 889 Query: 707 NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY--------LDWTRKLDYTTKQPHYKRPK 758 + P W +L G K P Sbjct: 890 SAPAEKGGWTSIVLDWMQGRGDCGPDLTGPDVELIPSGDGAQPAGKPQRAVPTPAPVAVA 949 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL------DFIPHFKKDPDRTDRGTLF 812 + S + + P A R L + +D G+L Sbjct: 950 RPDSGTRELAVLSATSFSLMEWCPLAWRRRYRQGLDLAWEAPRGAAEEDGRGGSDLGSLA 1009 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H I+ + L + R+ F+ E Sbjct: 1010 HWILARWPSAEGDAEAELERWLTDPRALRSLPTLLRDVWREEENRNALRPWLLHFVGSEA 1069 Query: 873 KI-QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + A +E G+ L+G D + + + DYK + ++ Sbjct: 1070 GVMVRGALPLGARREAGFRVEVGGLALSGAMD-VVWREGEIWRVLDYK--VTLMQNAPEE 1126 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 L QL L A A + G+ + + L+++ + + + + + Sbjct: 1127 LYSAQLDLYALAARKGAELAGAPCRRVEAGLVFLRERSPLRMRKVEDWEAIEGRVRAAAR 1186 >gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] Length = 1159 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 98/795 (12%), Positives = 200/795 (25%), Gaps = 74/795 (9%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGS 235 + + L+ W ++ + A + + GT AG Sbjct: 368 DFSDLIGRTSALLREPGAAWVLYKLDGG-IDHLLLDEVQDTAPEQWEIAGTLTAEFFAGL 426 Query: 236 TG-SIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI---TEKSTNITSSNTTYSTH 291 + R + V + G D W I + + + Sbjct: 427 DDRAEQGKPRTVFAVGDPKQSIYSFQGADP-QAFRHWRGIMAHRVQQIGYEWRDRPLTVS 485 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 + + L + + + R G + E R + P Sbjct: 486 FRSTAPVLALTDAVFADPLARQGVIEPEETLRHLPDRAEDAGTVEIWEPVQTPETPTRPA 545 Query: 352 IQKCFSDVALIEADN--EREEAISIAIALRMSLDENKKKS------ALITADRNLARRVK 403 Q A + A IA + +L + L+ + A ++ Sbjct: 546 WQPAEEYGTHTTAASLLAGRLADWIASRIGQTLPSENRPIHAGDYLILLRRRKPFAPLLE 605 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L G+ + +PL++ + L +L + + +D MA+A L+ PL Sbjct: 606 RALKLRGVPVAGLDRLPLTSQPAVADLLALCDTLLLPDDDMALACLLTSPLGGLSDDSLM 665 Query: 464 LSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 LR + D + L+ + Q + T S + A L Sbjct: 666 ELALGRRDTLWGTLRKRRKERTAWDQAASFLEDMLGQVDYTTPHALLSAALVRHRGRARL 725 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + P+ S + V L+ + R++ + Sbjct: 726 FARLGAEASEPIDELLNAAMRYAQLHPPS--LQGFVHWLRRSAPEVKREMSSGGQ----- 778 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 ++ + ++A + D ++ ++ + + L + ++ D Sbjct: 779 ---AVRIMTVHGSKGLEAPIVILPDTVSTPRTENSILWTEDPETGLSVPLWKPNQDFQCD 835 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + + E A + + R + Sbjct: 836 SFAVLEAKEQ------------------------AARQEEYNRLLYVALTRARDRLLVCG 871 Query: 703 LRENNIPTIAS--------RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 R ++RL R + T Sbjct: 872 WLGKENKPPPDESWYAAIRRGMERLPNAETVGTDHGEVIRLTSPQQRAAQQARTDISTPV 931 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH- 813 + P P +A + + + +P A L +P R Sbjct: 932 QAP-PAWMGQAPDWQPAPRPAEPVRPEPLAPSRPDNADLGPVPAADSPLIADRRARFRRG 990 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEK 873 +I +L++ E MK+ + E + L+H Sbjct: 991 QVIHQLLQHLPLLPAKEREAAMKRFLLQTLPSEADHVAKQ----------ISAILDHPRL 1040 Query: 874 IQSSIEKIFVNIPAKMAI--ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETA 929 +P I + + G DR+ +L + I DYKT +P Sbjct: 1041 AALFGADGRGEVPLTGVIGPDDKPQVIGGIVDRLAVLPE-RILIADYKTNRHPPASISET 1099 Query: 930 QKLIDPQLSLEAAAL 944 L Q++ A L Sbjct: 1100 PVLYLRQMAAYRAVL 1114 >gi|332652747|ref|ZP_08418492.1| ATP-dependent helicase PcrA [Ruminococcaceae bacterium D16] gi|332517893|gb|EGJ47496.1| ATP-dependent helicase PcrA [Ruminococcaceae bacterium D16] Length = 835 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 84/788 (10%), Positives = 200/788 (25%), Gaps = 125/788 (15%) Query: 12 APSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKK 71 F G L+P ++ T +A EL+ + G + Sbjct: 93 PEDLDFLENYANT-GEGDQDRMVSLCALDPAAPWTILAITFTNKAAGELKDRLSAMLGPE 151 Query: 72 STILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLY 131 + E+ + + + V ++R +E + D + Sbjct: 152 A-------------EDVWASTFHSAC-----VRILRRDIERLGFASSFTIYDTDDSLRVI 193 Query: 132 PESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIA 191 + L + +++ I + + ED + + + + Sbjct: 194 KDCLKELELDDKQFPP--RSVLGYISRAKDQMLLAED--YAAQSEKSGDYR--LNKIAKV 247 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLM 246 + RL E NA + +R + ++I + L Sbjct: 248 YTRYQHRLWEANALDFDDIILHTVRLLQQFEEVRAYYQRKFRYVLIDEYQDTNNLQYLLA 307 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 ST+A V+ D + T ++ +P+ +L + Sbjct: 308 STLAGGYENFCVV--GDDDQSIYRFRGATIENILSFEKQ-----YPRCRTIRLEENYRST 360 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + ++ V GR ++ + + A N Sbjct: 361 KHILEASNAVIRNNQGRK---------------------GKELWTKAGEGEKLQVYTAMN 399 Query: 367 EREEAISIAIALRMSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 E +EA +A + + + K A++ + +++ R GI I G Sbjct: 400 ENDEAQYVANQILDDFGQGRAWKDHAVLYRMNAQSNQLETAFKRSGIPYRIIGGTRFFDR 459 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 +T+ L + D + + ++ +P G ++A E Sbjct: 460 AEVKDMTAYLAVLNNPEDDLRLQRIINNPPRGIGAKTIETAQAIAQRE------------ 507 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 S + D ++ + Sbjct: 508 -----------------------GASLYAVIDNARMYPELERSAAKLAAFTNLMGELTGL 544 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE-EEGKTLSSLFSKIIETGSCIKANAI 603 L + + + + + E + E + L + +E Sbjct: 545 LTTLPLDQFYEEMMIRTGYAAMLETKNTVEDRTRLENIRELLTSIRGYMENAGDEP---- 600 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + + + ++ ++ L F + + G EG++P + Sbjct: 601 TLAGFLDEIALYTDLDSHDPDQDCVVMMTMHSAKGLEFPVVFVVGAEEGIFPSSRIMGE- 659 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQR 718 ++ + + + L T + + SR+L+ Sbjct: 660 -------------PDEMEEERRLCYVAMTRAKEKLYLTCAGQRMLFGRTSANRPSRFLEE 706 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLD------YTTKQPHYKRPKPFPPLEAQPRTYSF 772 + N RG + + + P+ +RP+P P +S Sbjct: 707 IPPEHLERSGRNFLDRGDSWGGMPSRTSGYGGYAKPERSPYDQRPEPRAPQRRDYGGFSR 766 Query: 773 SEIKQLIN 780 + Sbjct: 767 AMGTSAAP 774 >gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 755 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 83/696 (11%), Positives = 195/696 (28%), Gaps = 121/696 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + +T +I + + + N Sbjct: 54 NILAITFTNKAAREMRER--ALLLNPATQETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ S I AKN D++D + E Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERSILGTISNAKN--DLLDEMAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 AQASDMYSQIV---------------ARCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 EVLSYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFQNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + + ++ +V R Sbjct: 261 NILDFEK-----DYPKAKVVLLEENYRSTKTILQAANDVIRYNKNRK------------- 302 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 E K+ + A++ER+EA+ IA + E K A++ Sbjct: 303 --------EKKLWTQNDQGEKIVYHRANDERDEAVFIASTISNMCLELGKSFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ + I + G + L + LN + +D ++ +V P Sbjct: 355 TNAQSRTIEEAFLKSNIPYTMVGGTKFYSRKEIRDLIAYLNIVANPSDNISFERIVNEPK 414 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G R L + + ++ + Sbjct: 415 RGVGPGTLEKLR---------------------LYAYDSQLSLLEASSNLFLSPLKGKAA 453 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L L + + + + + T Q + Sbjct: 454 QAITDLATL----------LTSLRQDLDHLSITELAEALLEKTGYLEQLKIQNTLESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE +++ F ++ + ++ + L +S+ + ++ Sbjct: 504 IENIEEFLSVTKNFDD-NQSPTNDESGIDTLGRFLNDLALIADTDDDKTESAEVTLMTLH 562 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 563 AAKGLEFPVVFLIGMEEGVFPLSRAS--------------EDQDELEEERRLAYVGITRA 608 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725 +++ TR+L SR+L+ + Sbjct: 609 EQILFLTNANTRTLFGKTNYNRPSRFLREISEDLLA 644 >gi|188582349|ref|YP_001925794.1| hypothetical protein Mpop_3104 [Methylobacterium populi BJ001] gi|179345847|gb|ACB81259.1| conserved hypothetical protein [Methylobacterium populi BJ001] Length = 884 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 91/746 (12%), Positives = 185/746 (24%), Gaps = 95/746 (12%) Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + + I + S D + ++ + A EAI Sbjct: 166 PLLQALTTHIPVQWTAGPRSVPAWLDSTSVTVTRAPAQEPGISAVSAATAYHEAIEAMRW 225 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434 R L S + A + A L I++ G+ TT +L Sbjct: 226 ARNLLASGVSPSEIAIATASPADYDDHFLALRADANIDLHFVHGVRTVTTREGQAAAALA 285 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + + + L R + + + VL Sbjct: 286 DIVVQGLSQSRLRRLAA-----------------------LCRDSGPFETLPEGWLRVLP 322 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 A +RL+ ED V + + L + Sbjct: 323 TDAPLSTPGAWNRLLARLTPEDWPDGADHVPALRTAVDTLAKGSDAASEIGDAFLKGRAL 382 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L +++G + + S + A+ ++ ++ Sbjct: 383 AIWRKVLLAGPAASIDATLETLKQDDGLEACVCVAWMP--ASALAASPRRFVRLLGL--- 437 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + P+ L + + +L+ + L + T + + + D + Sbjct: 438 NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFETIIATTADTVVLSRARRDSDG 497 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + + A R+ + + R + R + Sbjct: 498 RLLGRSPLLAG-------RGDETYLRRNATPAHAFSETDRLMARPQEFAADPQAVGAQGC 550 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + + T R L RT S S +++L+ +P + Sbjct: 551 WRDWRRA-----EVTPHDGLVRADHPLVLAILGRTQSASSLRRLLRNPLSFVWVYAFGWR 605 Query: 795 FIPHFKKDP--DRTDRGTLFHNIITELIKKRINKNTPEINH-----------LMKQIIDS 841 + D G L H ++ ++ D Sbjct: 606 EPQSSAEPLVLDALGIGDLVHMVLDRALRDLETGGGLASADTETIEAAVARAAQAVAADW 665 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------- 888 E+ P I ++ L + ++I F +P Sbjct: 666 ESERPVPPSVIWGRTLDDARVMAGRALSYGDEILPGAR-AFGEVPFGGLEPKSDAETPWD 724 Query: 889 ----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAA 942 + I G + G+ DR+D+ G + DYKTG P+ E + Q L A Sbjct: 725 ASTPVTIPDTGFSIAGYIDRLDISGDGKRALVRDYKTGRPPRGEIRLNGGRELQRCLYAF 784 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 A+KA + + D + + + + L L Sbjct: 785 AVKALLGDDVA-----------ISASLLYPREPVDLQLDDPEAVLAEITGYLRAARMSL- 832 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + +YD LA Sbjct: 833 -------AGGAALPGPDTGGDYDDLA 851 >gi|3790598|gb|AAC68687.1| unknown [Rhodococcus erythropolis] Length = 323 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 77/308 (25%), Gaps = 24/308 (7%) Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + S S P Sbjct: 8 PVSSPPAPTELSDQPHSLPGVSSVELPTPTPTGATSQERPRSRPALSPSRAGDYKQCPLL 67 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 R + ++ P RGT+ H + L P+ + + Sbjct: 68 YRFRAVDRIPETPTR-----AQVRGTVVHAALEALFALPTGHRVPDRAAELVRPAWERVS 122 Query: 845 KENLPPH--IDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 E+ I F + + + + + + + +E G+ L G Sbjct: 123 AESPEAAELIPEDELDAFLGEVGKLVATYYTLEDPTRFDAEACEVYVETELE-NGVRLRG 181 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 F DRID+ +G V + DYKTG P +E + Q+ A L A L Sbjct: 182 FVDRIDVAPTGEVRVVDYKTGKAP-REFTESKALFQMKFYALVLLR-----TRGIVPAQL 235 Query: 961 FYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNI 1020 I L + + + + K +L G + + Sbjct: 236 RLIYLPSGSILTYAPDHDELIRFERTLSAIWK------AILAAGATG-DFRPKPGK-LCD 287 Query: 1021 QSEYDHLA 1028 ++ L Sbjct: 288 WCDHKSLC 295 >gi|229592598|ref|YP_002874717.1| exonuclease V subunit [Pseudomonas fluorescens SBW25] gi|229364464|emb|CAY52291.1| exonuclease V subunit [Pseudomonas fluorescens SBW25] Length = 1149 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 98/981 (9%), Positives = 246/981 (25%), Gaps = 107/981 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ ++ G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPEDDDMGGCGIAAAIDVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + ++L + PP S + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYR--MVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDQPHFEPLQRF-LTHD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASKYWT 196 LA+ LAD+ D + W + A ++ W Sbjct: 137 TDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGESKPLNLANCWQAELWR 196 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVA 250 L+++ + + + E + P +I+ G + ++ +A Sbjct: 197 ALLLDVGEEGMAESRAGVHQRFIERINTLEHAPPGLPSRVIVFGISSLPAQALEALAGLA 256 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + H + I + + T Q++ L + Sbjct: 257 RFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKSGMPVTIDPQTLHQHAHPLLAAW 316 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILEN 347 R+ + L + + R+ S+ + E Sbjct: 317 GKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSEPTTLLNQLQDDILELRPLNETREL 376 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVK 403 + + A + + E + L + ++ D + Sbjct: 377 WPAVDLDRDTSIRFHIAHSAQREVEILHDQLLQRFSADPALRPRDIIVMVPDVDSYAPHI 436 Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + I ++ + LL I L+ P + Sbjct: 437 RAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSRFPVSEILDLLDVPALR 496 Query: 457 FGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPH 507 F E+ L +E +R N+ L ++ + V Sbjct: 497 ERFAIKERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPTELEQNSWRFGLRRMLLGYAVGT 556 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + E + L ++ + L+ + + + + L + Sbjct: 557 GAACDGIEPYDEIGGLDAALIGPLVALLDALNDAHQALSQPAPPRVWGERLQRLMQLFFL 616 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + + + + + G + + +D + + + Sbjct: 617 PSSEHDDYLLGQLEQLRETWLETCESVGLQDELPLTVVREAWLAGLDQGRLSQRFLAGA- 675 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + + R + F + L G+N+G +P+ F ++ + Sbjct: 676 VNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LL 734 Query: 688 FEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG------------------TDF 727 + + L + R +N AS + +L Sbjct: 735 EALLSARDQLYISWVGRSIRDNSDRPASVLIGQLRDHLASGWHHANSDEPLIDAMTQEHP 794 Query: 728 FDNLKKR----GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 R G + R+ + + Q S +++ + +P Sbjct: 795 LQPFSARYFHEGDALFSYAREWQLLHEASDALPTEHDLAPHQQEEPLSLGQLQDFLRNPV 854 Query: 784 AVYARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 + + LK + D R +L ++++ + + + + ++ Sbjct: 855 KHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYSLSDSLLSAALTQPDHLDQALNAQALR 914 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI---QSSIEKIFVNIPAKMAIES 893 + + + + E + Sbjct: 915 LQGSGLLPMVGFGECLRNELIEPLPDLLRRYQQLLALWPTPHPGAEPVSFEH-------- 966 Query: 894 IGIHLTGFADRIDLLKSGFVD 914 G+ L G+ + G + Sbjct: 967 HGVQLEGWISGLHRRSDGGLL 987 >gi|254510735|ref|ZP_05122802.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221534446|gb|EEE37434.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 837 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 83/711 (11%), Positives = 185/711 (26%), Gaps = 101/711 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E++ + G+ + +P + + + V Sbjct: 77 EILAVTFTNKAAREMKERVGRMLGRPAEGMPWLGTFHAIC-----------------VKL 119 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D K L + L+ + + W A+ LA IID + Sbjct: 120 LRRHAELVGLKSNFTILDTDDQKRLLKQ--LTQAANIDDKRWPARMLAGIIDDWKNRALT 177 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + + A + + RL ELNA + ++ H Sbjct: 178 PDKVPAADAGAFNHK-------GIELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHGDVL 230 Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + A + +A + D W + Sbjct: 231 EQYQRWFRYILVDEYQDTNVAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 288 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + P + +L + NV R Sbjct: 289 RFEKDF-----PGAFVVRLEQNYRSTPHILAAASNVIRGNEKR----------------- 326 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393 L ++ +K V LI + EEA I + R N + A++ Sbjct: 327 ----LGKELWTDRKEGEKVRLIGHWDGEEEARWIGEEIDAMQGGTRGVRPMNLDEMAILV 382 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + R + G+ + G + + + D +A +V P Sbjct: 383 RASHQMRAFEDRFLTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSPEDDLAFERIVNTP 442 Query: 454 LAKFGF---------PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 G ++ +V + + L+ L+ Sbjct: 443 KRGLGDKAQQTIQMTAREHGVSLVEGARIVVEEKLIGARGVNALRELIDGLARWNVVVGT 502 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 A V L +Y+ ++ + ++ Sbjct: 503 RRTAPPSRRNAAPPSARKRVARPLGAEEYDASYRQHEYEGRTEYEDEVVEPIVEPFEESQ 562 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT---------RLIDG 615 + +E + ++ N E ++ + + Sbjct: 563 TSNYDHIELAQIVLDESGYTAHWQNEKTPEAPGRLENLKELVNQLDNFENLQGFLEHVSL 622 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + + + I+ ++ L F + L G +G++P + + + LK Sbjct: 623 VMDNEQDGDGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ESGLK 673 Query: 676 TAEKYIGQAAHDFEMANGTRHL-IYTRSLRENN----IPTIASRWLQRLLV 721 E+ A + + + + ++ SR++ L Sbjct: 674 GLEEERRLA---YVGITRAEEVCTISFAANRRVFGQWQNSMPSRFIDELPE 721 >gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] Length = 1179 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 91/872 (10%), Positives = 217/872 (24%), Gaps = 106/872 (12%) Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 LA + EEK +D+ L + F + + ++ + Sbjct: 314 LASLFQE--DEEKCRQDIRRLVPV-VSELFGAVKRFSRRLDEKKQQKRLADFGDLEHWAL 370 Query: 212 IALMRAEAEHLMK--------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 L+R E + + +++ + A + ++ + D Sbjct: 371 RLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDTNEAQDMIFRAISREEKN--LFMVGD 428 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + + ++ + + ++ + + V++ + Sbjct: 429 VKQSIYRFRQAMPEIFLRRKASYPDYDPEKNEYSAKVNL----DRNFRSRHGVTDGVNFV 484 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE----EAISIAIALR 379 + + P ++ +++ ++ + EA I + Sbjct: 485 FRQLMSVEMGEMEYTGEEELTPGASYPEREEADTELHILTLPKGADMDTLEAEYIGSLIA 544 Query: 380 MSLDE--------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 + + LI +L GI T Sbjct: 545 SMVRNGELVQDGGKQRPAAYRDFCVLIRNANAHGGVYAAKLREMGIPAWSDTAGTFFGTP 604 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG------- 478 S+ S L + + + +++ P+ F + R + Sbjct: 605 EVSVALSYLRVLDNPVQDIPLLSVLISPIWGFTPDDLAQIRMARKGDAFYFALKDAAERP 664 Query: 479 ---NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + ++ AT + + A+ D L + L+ Sbjct: 665 DVLGARCHRFLEHTEAFRRLAATLPADRLIQRLYEATGYPAVAQAMRQGDLRLNNLRLLM 724 Query: 536 TYKTNKNSTCGN------LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 Y + + I + L E + + + K L Sbjct: 725 KYARDYEGSGYQGLSGFIRFIDRLQEQDSDLAPAAALSESANVVRVMSIHKSKGLEFPIC 784 Query: 590 KIIETGSCIKANAIEWIDI----ITRLIDGETVKPKIEKSST----LFILGTLESRLLNF 641 + T + + + + ET+ + + L I S L Sbjct: 785 ILANTARQFNKRREDILLHPALGLGMKLRDETMTVQYDTMPREAVSLEIERGGMSEELRV 844 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + + E + + + L + + + + A I + Sbjct: 845 LYVAMTRAKEKLVMLTSLDD---PVKTLGKLGAQLTD-SKAISPYVVRSAGSFSDWILSC 900 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR----P 757 +LR S R + + L+ R+ T KR Sbjct: 901 ALRH------PSGGGLREKAGVLPGVMLTEGENWKILLNPVREQQETVSGETEKRRQIQA 954 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYA----------RRILKLDFIPHFKKDPDRTD 807 P Q R + L + P V A + + Sbjct: 955 DPELTALLQKRFSFVYPGEALKSVPAKVAASELAGKENAKEYAAMSRPAFLTGQTMTPAE 1014 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 RGT H + + ++ + + + + + + S Sbjct: 1015 RGTALHLYMQFADYRLAKQDPEKQLRFLLEKG------FLTQEQAEAVSLKKIERFFQSG 1068 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIES-------------IGIHLTGFADRIDLLKSGFVD 914 L + ++ + I + + + + L G D + ++G + Sbjct: 1069 LYRRMEQSENLRR---EIRFTVELAASEVNPGLTGQNGREPVVLQGAVDCVFE-ENGGLI 1124 Query: 915 ITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + DYKT +++ + QLSL A AL+ Sbjct: 1125 LVDYKTDYVKEEQELKNRYCRQLSLYALALEQ 1156 >gi|309973556|gb|ADO96757.1| Exodeoxyribonuclease V, gamma chain [Haemophilus influenzae R2846] Length = 1121 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 119/984 (12%), Positives = 249/984 (25%), Gaps = 144/984 (14%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + +Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMLQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNNTLFAQIQGNTKWQGELWRALVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + S +LL + L+ P + Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNL---------- 731 E R + R +N P S + +LL +N+ Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 732 -------------KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + +L + D + P + + + Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIA-QFDTAASNSEFAVTMTENPEKIEEVEL--DSLVSF 838 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMK 836 + +P + + L + F ++ D ++ ++ +L + Sbjct: 839 VENPVKFFFEKQLGVYFRDKDERIADS-----------ENFTLSGLDNYSLNNDLIYLDE 887 Query: 837 QIIDSHFEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE-- 892 Q +F + + + I + LE +EKI E +I +A++ Sbjct: 888 QNFADYFRQAEVKGVLPRAEFGKVYAENIRDNVLEFKEKIADLGEPKQASIDFNIAVDWQ 947 Query: 893 --SIGIHLTGFADRIDLLKSGFVD 914 + I L G+ D + S + Sbjct: 948 NENQKIRLFGYMDALFGDDSQVIH 971 >gi|294635089|ref|ZP_06713601.1| exodeoxyribonuclease V, gamma subunit [Edwardsiella tarda ATCC 23685] gi|291091511|gb|EFE24072.1| exodeoxyribonuclease V, gamma subunit [Edwardsiella tarda ATCC 23685] Length = 1127 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 90/799 (11%), Positives = 195/799 (24%), Gaps = 96/799 (12%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 +++ AL+ G ++N I V + Q L+ E G + I Sbjct: 11 DVLTQLMAALMQGQPLDN---------PFEREVILVQSPGMAQWLQMELARSFGIAANID 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L S +L L+ + + + Sbjct: 62 ---FPLPATFIWDLFTRVLPDIPQRSAFSKDAMTWKLMWLLPQFLTR----PEFAPLAHY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D + WE + + W +A Sbjct: 115 LSDDADRRKQFQLAARIADLYDQYLVYRPEWLQRWEQGTLIDDLDSAQLWQAPLW---VA 171 Query: 192 SKYWTERLVELNASSP-VGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + +TERL + + + +A+ G + I G + P + + Sbjct: 172 LRDYTERLGQPQWHRANLYQRFIQALQQADQPPAGLPRRVFICGISALPPVYLEALRALG 231 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTT----------------------- 287 H + ++ + I + Sbjct: 232 EHIDVHLMFTNPCRYYWGDIQDYAFLARLQSRRRRDYLLAQRTLGESHSTLFRTPEQASA 291 Query: 288 --YSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR--------------SMVISKSF 331 Q LL D L + + Sbjct: 292 LFGEDGEQQLSNPLLASWGKLGRDHMYLLAQHGPQEVSAFVDLDQDTLLQRIQRDMLELE 351 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----K 387 +D T ++ + +++ + + E + L + + Sbjct: 352 DHACIADSPQTLQDSSRKRLLAPDDRSISVHVCHSPQREVEVLHDCLLDMFAADPTLSAR 411 Query: 388 KSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 ++ AD + + + IS +LL+ Sbjct: 412 DVIVMVADIDSYTPFIQAVFGNAPAARYLPFAISDRSARQLHPVVQATLALLDLPNSRFT 471 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + L++ P F + V G + D +++L L Sbjct: 472 AEQVLALLEVPALAARFA-IDEEGIRLLRHWVEDSGIRWGLDDEAVRALALPATGQHTWQ 530 Query: 503 THVPHWQSRLSEEDK-----------ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSIS 551 + + + + E + + + + L + + +++ Sbjct: 531 FGLTRMLLGYAMDSRCGDWQGVLPYDESSGSVAELVGHLAQFLAALRDWRQRLGQMQTLA 590 Query: 552 DWTKLTVTCLQNV---CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI 608 W L L D + + L S ET + Sbjct: 591 QWQPLCRELLDTFFLTDADSEAVCALIEQQWLQLLTDGLTSNYAETLPIALLRDELAARL 650 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 T+ I + + + + R + F + L G+N+GV+P+ A F Sbjct: 651 DTQRISQRFL------AGPINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGFDLMAG 704 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTD 726 + ++ + + + L + R +N S + LL Sbjct: 705 KVQRGDRSRRDDDRYL-FLEALLSAQQRLYISYIGRSVQDNTARYPSVLVSELLEYIAQS 763 Query: 727 FFDNLKKRGQCYLDWTRKL 745 ++ R + Sbjct: 764 HCLAADRQRDVDSSAARVM 782 >gi|313500581|gb|ADR61947.1| RecC [Pseudomonas putida BIRD-1] Length = 1160 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 111/986 (11%), Positives = 255/986 (25%), Gaps = 108/986 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ + G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + + L S P VS + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFL-----KIASKY 194 LA+ LAD+ D + W L ++ + + + ++ Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWATGEHAINTARGERKVLPPGNRWQAEL 194 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248 W L ++ + + + E + + P +I+ G + ++ Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ++ + + H I ++ T Q++ L Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSF---------------LPPDTSDMRNTDIL 345 + R+ + L + + + + + Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 E P + A + + E + L + ++ D + Sbjct: 375 ERWPPVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 A+FG E L +E +R ++ L ++ + V Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAEQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554 Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 ++ E + L I + L + + ++S W + L Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E L + S G + +D + + Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N AS + +L + ++GQ Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPAKPGE 791 Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771 + L T++ ++ +P P S Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPGLPPYQDAEALS 851 Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + P + + LK+ + + D + TL +E + Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911 Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ LP + ++ + L+ +++ V Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914 + E L G+ R+ + + Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996 >gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB] gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB] Length = 1134 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 76/814 (9%), Positives = 179/814 (21%), Gaps = 63/814 (7%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGM-WWLLAA---DFLKIASKYWTERLVELNASS 206 L + ++ E L L + W L++A+ E Sbjct: 320 ELLGDLRSVDGLEAALAMLVKLPQPELSEAEWATVECFSRLLRLAAGQLWLAFQEAGEVD 379 Query: 207 PVGYQIALMRAE--------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP---NG 255 + A + +++ + P+ L+ + +G Sbjct: 380 FIEIAARAGLALGDDDAPTDLAQALDYRIRHLLVDEFQDTSPSQVGLIEKLTRGWMPDDG 439 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY--STHPQYSLAKLLDFLDIKREDVKRL 313 + D + + I Sbjct: 440 RTLFVVGDPMQSIYRFRKADVGLFLRVRERGIGDIRLGHLRLFRNNRSYPGIVDWVNAAF 499 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 ++ S + + + + D EEA Sbjct: 500 PSIFPA--------EDSPEAGAVRYAESAATRSPRADSGVVVHPVIEHEGGDAAGEEARR 551 Query: 374 IAIALRMSLDENK-KKSALITADRNLARRVKLELTRFGINIDISAGI--PLSTTLHSSIL 430 + +R + ++ A++ R+ + E+ R + A L H L Sbjct: 552 VLTIIREARRAAPAERIAVLVRARSHLDALVSEIRRSAPELRFQAVDIEGLDGRQHVQDL 611 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 +L A+ D + L++ P + + A + + + Sbjct: 612 LTLFRALHHRADRVHWLALLRAPWCGLKLADLHALAA------DDKKSTIWQLMQDEARL 665 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L Q+ + + D++ ++ + + + + Sbjct: 666 ARLSDDGQQRLRHVLGVLHQAFAGRDRQHPRRWLEGVWLMLGGPRCL-EAPEALNDVEAF 724 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 V L+ + + + + + + ++ T Sbjct: 725 FALVDKLVASRTLSAETLAAHAAELY---------APSDPLGDAVQMMTVHKSKGLEFDT 775 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQS 670 ++ G + SS L + + + TA + + Sbjct: 776 VILPGLHRETGGNDSSLLLWDEVAGADGDEHLLVAPIKQKGAGNGEPTAYDYLKKLEAER 835 Query: 671 DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 A + A HL+ + S Sbjct: 836 A-----AHEDERLLYVAATRAIRRLHLLGIAVADAKKEEGLKSP---------ANGTLLK 881 Query: 731 LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790 L G ++ L + + + P R Sbjct: 882 LLWPGVAQREFLAALTEGESGEPARASIDPATFVPPLVRLREVHVPPALRSPAEG-VRPA 940 Query: 791 LKLDFIPHFKKDPD-RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + + GTL H + + K + + + ++ + + + Sbjct: 941 DNPVDLDTPESTLSLEASVGTLVHRCLELIAKNGLPAWSDKRISGLQPVYQRWLQAQGHS 1000 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK 909 S L + + + + + DR+ + Sbjct: 1001 EADAESGAGEVVAALVSTLASDTGRWLLTDHPQSAAEQAWSSTDGSLTVNHVIDRVFV-A 1059 Query: 910 SGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEA 941 I DYKT P E + PQL A Sbjct: 1060 DACRWIIDYKTVRLPDAELPQRAESYRPQLERYA 1093 >gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium HTCC2083] gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium HTCC2083] Length = 1122 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 69/806 (8%), Positives = 197/806 (24%), Gaps = 107/806 (13%) Query: 186 DFLKIASKYWTERLVELNASSPVGY----QIALMRAEAEHL----MKGTKGPIIIAGSTG 237 F + + L +E + G I++ + Sbjct: 332 RFAAAFLTRYEASKQARGWLDFDDLILKTRDLLANSEMAQWVLYKLDGGIDHILVDEAQD 391 Query: 238 SIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT-- 286 + P ++ + A + D + + + S Sbjct: 392 TSPTQWDVIERLTSEITAGDGARGEVPRTIFVVGDKKQSIYSFQGADPREFDRMRSEFDV 451 Query: 287 ----------TYSTHPQYSLAKLLDFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 H + ++ + L + + + SN + + + P Sbjct: 452 RLRPTNSPLVPAELHYSFRSSQCILELVDKVFEDHPTAGFSGSNHLAFEGGPPGRVDIWP 511 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-------- 386 D + + +D ++ A +E + + +L + Sbjct: 512 AIPKAEKLDGGDWSDTVDKLGENDETVLMAHRIADEIARMTGPMGEALFDKGIFRKVRAG 571 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ +L + G+ I + + + + L +LL+ + D ++ Sbjct: 572 DVLILVQRRSDLFEEIIRACKTKGLPIAGADRLKVGAEMAVRDLQALLSFLATPEDDYSL 631 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A ++K PL + + + + D+ ++ D + Q + Sbjct: 632 AVVLKSPLFGWSEKRLFDLAHDRSGRFLWQELRSRKNMHSDVLHILED-LRKQADFLRPY 690 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 R+ + + + S + Sbjct: 691 DLIERVLTRHNGRRHFVGRLGREAEDGIDALLAQALSFERSR------------------ 732 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 W E + T+ S+ + + + + ++ ++ + S Sbjct: 733 IPSLTGFLTWMESDDLTIKRQLSQDRDEIRVMTVHGAKGLEAPIVIMPETQKRKSPGGGS 792 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + + + + N D ++++ + + + Sbjct: 793 LIKMDDLVGWSVRNED---------------------APDIIKTAKAQREERQAEERMRL 831 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY---LDWTR 743 + + + + S + + G+ Sbjct: 832 LYVAMTRAEKWLILGAAGDLGKTDDESWYGLVSAAARERPHVEYDFAFGKGLRIEPVPWG 891 Query: 744 KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 ++ T KQ + PL + + + + K + Sbjct: 892 DVEETPKQAPLAQSIELDPLFREAISITVPSETTISPSNLG-----GAKALPSETGLDEE 946 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 RGT H ++ + ++K L+ P+++ + Sbjct: 947 AAKMRGTQVHLLLEHFSQTPVDKWDTIAEALLPDT-----------PYLNDLIVE----- 990 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH-LTGFADRIDLLKSGFVDITDYKTGD 922 + + +P + ++ + G DR+ ++ V D+KT Sbjct: 991 ATKVITAPNLSFIFDHGTMSEVPITATLPNLSNKPIHGIIDRL-IVNDTDVWAIDFKTNT 1049 Query: 923 NPKKETA--QKLIDPQLSLEAAALKA 946 + + Q+ +AL+ Sbjct: 1050 AVPAGAGLCPEGLLRQMGAYRSALRQ 1075 >gi|188534873|ref|YP_001908670.1| exonuclease V subunit gamma [Erwinia tasmaniensis Et1/99] gi|188029915|emb|CAO97799.1| Exodeoxyribonuclease V gamma chain [Erwinia tasmaniensis Et1/99] Length = 1128 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 98/953 (10%), Positives = 231/953 (24%), Gaps = 120/953 (12%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L S + V + Q L+ E G + ++ + + + Sbjct: 28 DPLRSEVVLVQSPGMAQWLQMSLAEEFGIAA----------NIDFPLPASFIWDMFVRVL 77 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYP---ESPLSLPISPANAIWLAKNLADIIDI 158 P + + + LPD++ LS LA +AD+ D Sbjct: 78 PEIPKESAFNKSSMSWKLMAILPDMLPGEAFTPLRHYLSDDDDKRKLFQLASRVADLFDQ 137 Query: 159 IETEEKKWEDLHALKN-EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA 217 +W + L L A +T RL + + Sbjct: 138 YLVYRPQWLNGWEKGQLADGLGDAQLWQAPLWAALVEYTRRLEQPGW-HRANLYQRFIAL 196 Query: 218 EAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW---- 271 + + I G + P + + + H + ++ H I Sbjct: 197 LENSSTRPENLPDRVFICGISALPPVYLQALRALGKHIDIHLLFTNPCRHYWGDIQDYGF 256 Query: 272 ---------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 I + +S+ Q LL D L Sbjct: 257 LARLQSRHRRHYQDNRQIPQFRDADNASSLFNDAGEQQLSNPLLASWGKLGRDNLYLLAQ 316 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN--------------IQKCFSDVALI 362 + V + T ++ ++ + + +A+ Sbjct: 317 MEPNEVFAFVDIEPTDLLQTLKRDLLELEDHAVIGLKTSEWENSRSKRILAAEDRSIAIH 376 Query: 363 EADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINI 413 + + + E + L + ++ + ++ AD + + + Sbjct: 377 QCHSPQREVEVLQDRLLAMMADDPTLTARDIIVMVADIDAYTPFIQAVFGNAPADRALPF 436 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNAL 471 IS SLL + L++ P +F E+ L + + Sbjct: 437 AISDRRASQAHPVLQAFISLLGLPDSRFTAEDVLALLEVPAVASRFAIDEEGLRLLRYWV 496 Query: 472 ELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 +R + + DL + + + L+ Sbjct: 497 AESGIRWGLDDDGVRDLDLPATGQHTWHFGLTRMLLGYAMNSEAGDWQGILPFDESSGLI 556 Query: 525 DHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + L+ + + +W L L + + + L E + Sbjct: 557 AELAGNLAELLMQLNRWQRWLSEPRELQNWLPLCRQMLDDFFISDADTEAALTLIE--EQ 614 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + S ++ D ++ +D + + + + + R + F Sbjct: 615 WQQVISYGVQASYQQAVPLTLLRDELSSRLDQQRISQRFLAGP-INFCTLMPMRSIPFKV 673 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L G+N+GV+P+ F Q ++ + + + L + Sbjct: 674 VCLLGMNDGVYPRTLPPLGFDLMSQQMQKGDRSRRDDDRYL-FLEALNSAQQQLYISYIA 732 Query: 704 RE--NNIPTIASRWLQRLLVL------------------------GGTDFFDNLKKRGQC 737 R +N S + L+ + + Sbjct: 733 RSIQDNTERYPSVLVSELVEYISQSFCLADDSGSDVDSSAKAVVKHLHHLHSRMPFAAEN 792 Query: 738 YLDWTRKLDYTTKQPHYK--RPKPFPPLEAQPRTYSFSEIK-----QLINDPYAVYARRI 790 + + + + PP S + I + P + Sbjct: 793 FSASAEFRSFAAEWLPAASGQGTAHPPFMRALPEESETVIAFDKLIRFWRHPVRAFFSLR 852 Query: 791 LKLDFIPHFKKDPDRTDR---GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 L + F PD G + + + L+ I+ + Sbjct: 853 LGVSFQLEETGLPDAEPFSLDGLSRYQVNSLLLNSLIDGKEGDQL-----YARQRAAGVL 907 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 ++ + +++ E ++++ L+G Sbjct: 908 PYGAFGELFWLEQESEMRELAGRVREQRAAAE------SWEISLTLGETTLSG 954 >gi|145628124|ref|ZP_01783925.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 22.1-21] gi|144979899|gb|EDJ89558.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 22.1-21] Length = 965 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 104/867 (11%), Positives = 217/867 (25%), Gaps = 119/867 (13%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITAQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVD 195 Query: 202 L-----NASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVGDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292 + I + + + P Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQDEDQPLFSEDQLSQLENAQFDVTYQK 315 Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347 Q L + + R+ + L + + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPSPTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNGDAPQIPFSLSDNKLSESDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFPEKYLSRAKNALE----------LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVTDSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + H ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSHFFTALSALHETLQQSH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E I N ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTIHFNEELQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737 E R + R +N S + +LL +N+ + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQAKEPSVLVSQLLDYINQGQKENVLTVIEHPMTA 781 Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 W + T + + + + + + Sbjct: 782 FSPDNFKNNEKFTRSFATKWLPIAQFDTAASNSEFAVTMTENPEKIEEVEVDSLVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDR 808 P + + L + F ++ D + Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADSENF 868 >gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] Length = 1219 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 85/935 (9%), Positives = 203/935 (21%), Gaps = 115/935 (12%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD-IIDIIETEEKKWEDLHALK 173 L+ ++ ++ +I + P + A +AD +++ + L+ L+ Sbjct: 325 LVTLFGDEGAEIHRVGDEVLPKLAAATANRMTRAALRIADALLNDYQ------ARLNRLR 378 Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIA 233 + A L + V A A + + A Sbjct: 379 RVDFSDLVERARALLTDSEARGWALYKLDQGLDHVLVDEAQDTAPEQWAVINALTEEFFA 438 Query: 234 G----STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 G T A R + V + D A + ++ + Sbjct: 439 GDGAYETSHPDALRRTVFCVGDEKQSIYSFQNADPREFLAQRQRLQTEAKLARLRFESPP 498 Query: 290 THPQYSL-----------------------AKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + L++ L+ K + + Sbjct: 499 LNVSFRSSPEVLAAVDACFAAEAAVLNTERKDLVEGLETKLLMSDPETQQTRDPLAFHRY 558 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN----EREEAISIAIAL---- 378 + K Q+ D+ ++A+ + A ++A + Sbjct: 559 DGHVAARVNAPGCVEIWPAVPKPEGGQEDELDLRPVDAERKDSARNQLAEAVASEIADII 618 Query: 379 -------------RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL 425 R+ L+ L + L + + + + L L Sbjct: 619 TRGDGVWEEGKPWRLRPAHAGDILVLVRRRGGLFEEIIRRLKLKNVPVAGADRMTLPDQL 678 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDI 485 L SL D +++A ++K P +L G + + Sbjct: 679 VVEDLLSLARFALLPEDDLSLAEVLKSPFFHPVRAVTPPIDDDALFDLSRQPGARLWDKL 738 Query: 486 MDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTC 545 + L + Sbjct: 739 RRSDDPRFRDARAALETARARVETDAPYAFFARFLTETSPTGESRLARLYARLGEEARDP 798 Query: 546 GNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 ++ V ++ + + + + + + Sbjct: 799 AEEFLNRALAHEVEGAPSLSRFVAAM------QADAVQIKREMEAGRGEVRVMTVHGAKG 852 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 ++ + T P+ +E + Sbjct: 853 LEAPIVFLPDTTQLPRDRSGG--------------------LFAHEEAGLLWSPDMKMPP 892 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-------------SLRENNIPTIA 712 ++ S K + + R + S + + Sbjct: 893 PLLASIAERKELDADGEYQRLLYVAMTRARDRLIVCGHTHGVAGKVDAGSWHDRCQHSWT 952 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 + + +N + P P QP Sbjct: 953 GADWRPVKTALEGVAAENGWEAAPGLRYGADPKPLKASAAPEAAPVTLPGWAIQPPPADP 1012 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT-DRGTLFHNIITELIKKRINKNTPEI 831 + ++ + + + K RG L H ++ L ++ Sbjct: 1013 APVRSVAPSKLLGEEESGFEPASLSPLAKGGQSRFRRGELIHKLLQTLPDIEESRREASA 1072 Query: 832 NHLMKQI--IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 ++ +D +E + +I F + Q Sbjct: 1073 LRYLENQTDLDDAQRREIASETLRVISDPTFAALF----------QPGSRAEAAVAGQAA 1122 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAG 947 + G+ + G DR+ + V I DYKT P ++ + Q++ A L+ Sbjct: 1123 GLPG-GMVINGQIDRLVVT-DHEVLIVDYKTNRPPPQKVEDVPRAYLAQMAAYRALLQGL 1180 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYS 982 + V + + + Sbjct: 1181 ----HPEKPVRCALLWTVAPRLMELPPERMDAVLN 1211 >gi|308513303|ref|NP_952584.2| exodeoxyribonuclease V subunit gamma [Geobacter sulfurreducens PCA] gi|41152673|gb|AAR34907.2| exodeoxyribonuclease V, gamma subunit [Geobacter sulfurreducens PCA] gi|298505647|gb|ADI84370.1| exodeoxyribonuclease V, gamma subunit [Geobacter sulfurreducens KN400] Length = 1064 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 88/919 (9%), Positives = 212/919 (23%), Gaps = 104/919 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 TI V ++ + L E + G + + L P Sbjct: 34 TIVVQSRGMERWLAMELAKRLGIWANGS---YPFPNAFVWSLFRAALPHLPDQSPFDPA- 89 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 L I+ +L L+ LA +AD D Sbjct: 90 ---ILTWRIMDLLPRLLPEPAFGQLRGYLAGEDRELRLYQLAARIADTFDQYTVFRGDLL 146 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT- 226 ++ W W + + + A ++ A + Sbjct: 147 ATWETGRDQQ---WQARL---------WRALTADSPGTHRGAVRDAFLKQLAGGRLPAGV 194 Query: 227 -KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + + G + P + +++A + + I + Sbjct: 195 CPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIVSPGARARMTPERRQ 254 Query: 286 TTYSTHP-QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 HP SL K L ++Y + + + + Sbjct: 255 QAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLLAAVQNGILTLDEAD 314 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLAR 400 ++ + + + EA + L ++ + ++T D Sbjct: 315 GTPRLVRVDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTPRDILVMTPDIETYA 374 Query: 401 RVKLEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + R I I+ S + ++L+ + +++ Sbjct: 375 PYVAAVFGGGQDQRRRIPFSIADRSIRSAGGAADAFLAILDLPLGRFPATGVLDILETGA 434 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 F + + V + D + ++ L + ++ Sbjct: 435 VHRRFG-IDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSWQAGLDRLLLGVAM 493 Query: 515 EDKELA------------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 D+E A + + I + + + S+ WT L Sbjct: 494 PDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRSLEGWTATLRGILA 553 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + L + + E G+ +I + +P Sbjct: 554 DFFNPDDATAFER------AALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGERLDRPDQ 607 Query: 623 EKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + L R + F + L G+N+ + ++ + + Sbjct: 608 GLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDDSF---PRRDRAAGFDLMAADRRPGDRS 664 Query: 680 YIGQAAHDF--EMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + + F + + L+ + + + +N S + L G+ F D + Sbjct: 665 LREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGTDRFP 724 Query: 736 QCY----------------------------LDWTRKLDYTTKQPHYKRP--KPFPPLEA 765 +R+ +P + P + P Sbjct: 725 ASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGPASAD 784 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPH----FKKDPDRTDRGTLFHNIITELIK 821 + +++ P R L + ++P D F L Sbjct: 785 ETEILPLAQLISFFEHPVRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQEILDH 844 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + ++ + + P + + + + Sbjct: 845 ILAGGDPADLLPVARARG------GLPPARQGELAFAGLTARVRDLADRVRPATNGQPPL 898 Query: 882 FVNIPAKMAIESIGIHLTG 900 P + + L G Sbjct: 899 E---PLTVDLRVGERRLVG 914 >gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. natto BEST195] Length = 1232 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 121/1003 (12%), Positives = 257/1003 (25%), Gaps = 141/1003 (14%) Query: 58 QELRSEFIEITGKKSTILPIIK-SLGDVVE-EKFTADLLLSYNLNPPVSNIQRLLELARL 115 + L E + G + P L D+ + ++ L V + A Sbjct: 239 RAL--ELTKAPGGPA---PRADNFLDDLAQIDELIQHQDDFSELYKRVPAVSFKRAKAVK 293 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + L D DL + + + ++ + + + E L L Sbjct: 294 GDEFDPALLDEATDL--RNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVIS 351 Query: 176 KYGMWWLLAAD----FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + + Y L N +EA + ++ Sbjct: 352 YGKRFEAAKQEKSIIDFSDLEHYCLAILTAEN--DKGER----EPSEAARFYQEQFHEVL 405 Query: 232 IAGSTGSIPATARLMSTVANHPN-GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + + ++ V + P + D + T S Sbjct: 406 VDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465 Query: 291 HPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 D LD K+L ++ L D T+ Sbjct: 466 EGTGRKIDLNKNFRSRADILDSTNFLFKQLMGGK-IGEVDYDEQAELKLGAAYPDNDETE 524 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM---------------SLDENKKK 388 I N + + E + + EA +IA +R + + Sbjct: 525 TELLLIDNAEDTDASEEAEELETVQFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRD 584 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 ++ A ++ EL GI + + + ++ S+L I + +A+ Sbjct: 585 IVILLRSMPWAPQIMEELRAHGIPVYANLTSGYFEAVEVAVALSVLKVIDNPYQDIPLAS 644 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +++ P+ E L R +N L H+ W Sbjct: 645 VLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELYQKLNTFYG---HLQKW 701 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 ++ + V + + + K + D + + Sbjct: 702 RAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRARQYESTAFRGLFRF 761 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK---- 624 R + + + + S+ + + ++ + ++ G + Sbjct: 762 LRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAAGLGRNFNMMDLNKS 821 Query: 625 --------------SSTLFILGT--------------LESRLLNFDTLILGGLNEGVWPK 656 L I L S L + L E ++ Sbjct: 822 YLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLYVALTRAKEKLFLI 881 Query: 657 NTAKNP------FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL---IYTRSLRENN 707 + K+ + + Q+D L ++Y + DF RH + Sbjct: 882 GSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARHRDLGDLAGVPAHAD 941 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP-----------HYKR 756 I +R+ ++ + D+L++R + + + P Sbjct: 942 ISGHPARFAVQM-IHSYDLLDDDLEERMEEKSERLEAIRRGEPVPGSFAFDEKAREQLSW 1000 Query: 757 PKPFPPLEAQPRTYSFSEIKQLI--------NDPYAVYARRILKLDFIPHFKKDPDRTDR 808 P + S SEIK+ P IL KK ++ Sbjct: 1001 TYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRRPAFMMKKGLTAAEK 1060 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFL 868 GT H ++ + + + E + ++ + E ID +I F Sbjct: 1061 GTAMHTVMQHIPLSHV-PSIEEAEQTVHRLYEKELLTEEQKDAID------IEEIVQFFH 1113 Query: 869 EHEEKIQSSIEKIFVNIPAKMAIE-----------SIGIHLTGFADRIDLLKSGFVDITD 917 + IP +A+ + + G D + + G + + D Sbjct: 1114 TEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQGIIDCLYETEDG-LYLLD 1172 Query: 918 YKT------------GDNPKKETAQKLIDPQLSLEAAALKAGS 948 YK+ G P + + Q+ L A++ + Sbjct: 1173 YKSDRIEGKFQHGFEGAAPILKKR---YETQIQLYTKAVEQIA 1212 >gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 1101 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 91/914 (9%), Positives = 215/914 (23%), Gaps = 97/914 (10%) Query: 57 IQELRSEFIEITGKKSTILP-----IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLE 111 Q L + E + + +P + +LG E+ + +L + LE Sbjct: 218 QQALEAVLAEHLAEAARAVPLACRDEVMALGRFAAEQLADEQRPISHLLQAECFPEADLE 277 Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLA---KNLADIIDIIETEEKK-WE 167 + L ++ A + + +++ + E+ + Sbjct: 278 ALPVWRGLAELLLTSEGQWRKACNKNIGFPAGKKDPFASMKQRMLELLKRVSDEDCQALA 337 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERL----VELNASSPVGYQIALMRAEAEHLM 223 + +L + Y D L +L + +A + Sbjct: 338 QVVSLPSGGYSDQQWQTLDALLDVLPALVAQLWWVFRHCAEVDFTEVALKARQALVDSGQ 397 Query: 224 KGTK--------GPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWN 272 + I++ + L+ST+ +G + D + Sbjct: 398 PTEQLLALDRQIDHILVDEFQDTSWLQFDLLSTLVSGWQPDDGRTLFVVGDPMQSIYRFR 457 Query: 273 TITEKSTNITSSNTTYSTHPQ--YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 Q A I ++ Sbjct: 458 EAEVGLFLQAGQQGIGPVSLQSLQLSANFRSQQGIVDAINGWFPDIFPAQEDAGR----- 512 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKS 389 + + V +N EEA + +++ D + + Sbjct: 513 -------GAVCYFPAQPVLNRGMGEAVSVYPDYHNNPDEEAAEVVELIKVLRDRHPAESI 565 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 A++ R + + L + I L+ S LT+L A+ D ++ T+ Sbjct: 566 AVLVRSRTHLKSILPHLQKHAIGYMAQDIDVLTQCPVVSDLTALTKALLHGGDDLSWLTV 625 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 ++ P E + L Sbjct: 626 LRAPWCGLTLDELIHFA---------------PSKTTTVAQLATTEAVLSALPPASQQRV 670 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + + E L+ + + G ++ D + L + Sbjct: 671 AAVIAIVVEYRRRRGRVPLRQLVESCWRDLDGPCYYGGQAVHD-VEPFWALLDRLDYGGD 729 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 E + ++ + + + ++ ++ KP+ + Sbjct: 730 LLAIEQLDESLQQLFATPVVSGESAVQVMTIHKAKGLEFDHVVLPSLGRKPRRSDHPLMR 789 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 L LL G + + ++ L+ ++ A + Sbjct: 790 WLEHPTHGLLMAPITAPGDVADPIYGLLGQ--------------LEQRKEDYEVARLLYV 835 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 R ++ A LL + L + D Sbjct: 836 ALTRARRTLHLFGQAALARDGQAQPASGSLLATLWPAIGHHFVPDDSQTLQGDSEQDARR 895 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 P R +P + + D + ++ + G Sbjct: 896 YGPPLLRRA----------------------EPLYAVQPKRAEADGVTPWRSGTIASHVG 933 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 TL H+ +I L H +++ + L Sbjct: 934 TLVHHWFERFALDPQAIENYHQVEQRSALIGRQVRLLGLAEHHIEPMVGRINQLIDTMLS 993 Query: 870 HEEKIQ--SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 + + + ++ +++ DR + ++ I DYKT P + Sbjct: 994 SDRGRWILAPHPQGRNEYALSGELDGQFVNV--VIDRTFIHETERW-IIDYKT-SVPGRL 1049 Query: 928 TAQKLIDPQLSLEA 941 + ++ Q + A Sbjct: 1050 SMEEFYQQQAEIYA 1063 >gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus CB 48] gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus CB 48] Length = 1168 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 81/823 (9%), Positives = 198/823 (24%), Gaps = 83/823 (10%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGS 235 + S + + A R + M G +++ Sbjct: 332 TLQLFEDFSAIYQDLKRRTGALDFQDLISRAKRLLSGASMSQWVLFKMDGGLEHVLVDEG 391 Query: 236 TGSIPATARLMST------------VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITS 283 + ++ V V D + Sbjct: 392 QDTSGDQWDIVKALTGDFFAGASAPVFQARIERTVFAVGDEKQSIYGFQGAKPDLFLGMR 451 Query: 284 S---NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM----------------YGRS 324 + + + +L+ + + + + GRS Sbjct: 452 TYYQTLAKQAKKPFVVPQLVQSWRSLPQVLGFVDKAFDGPDLSEALNFTADPIIHDAGRS 511 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD- 383 + L P + D+ ++ N+ + ++ A IA +R Sbjct: 512 ERSATVELWPPIYPLAVPDLDDSDDENVAPVDASGVAPAKRLAQQLAFHIAQDIRQGRSV 571 Query: 384 -----------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 L+ L + EL + G+ + + + LS + L + Sbjct: 572 ICKSSRKARPMHAGDVLILVRKRDALFEHIIRELKQAGVPVSGADRLKLSDHIAFQDLRA 631 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK--NALELVALRGNKNSYDIMDLKS 490 L+ + D +++A +++ PL + + +L R +++ + ++ Sbjct: 632 LMRVCLQAGDSLSLAAVLRSPLCDLSEDDLFTLTRVEKASLWQALNRLAEDNPRFSEAQN 691 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 + ++ T L+ D + + + Sbjct: 692 FIGWALSEAPQRTAFDFLGLVLNRRDGAGRTQRQRFVTRLGVECEDVLDETLNLALKGEG 751 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW----- 605 L K + + ++ SK +E + A + Sbjct: 752 VGAIGLIDFLNLCEFNASEIKREQEEGGDRVRVMTVHGSKGLEAPWVVLPMAPGFKSTRN 811 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 D++ DG+ + + + L++ + L + + Sbjct: 812 DDLLLTSDDGDLLLSARGRDGDPQAVSALKAVRSLREAKEGLRLFYVALTRARDRLTLCG 871 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 N + Y A F+ T + + A + + Sbjct: 872 YRGSRAANGPFPDWYD-LAQDGFDRL---PREAVTAVELDTVVEFGAPK--DQESSEKAE 925 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + + P P P + R S + Sbjct: 926 LLLFGERAPLMSAEAQAAQTQTGLPAFVTAAPTPDPEADVVWRAVSQLSDEDRA------ 979 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + ++ R RG H + L + +K+ + Sbjct: 980 ---DEDRAPSPLAEQRGQGRFGRGLKIHKLFEILPALPVADRDNVAARWLKR-------Q 1029 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 +L R + + +S ++ + + + ++G DR+ Sbjct: 1030 PDLDDAQREEIRQAVMGVLTDARFADAFGPNSRPEVALAGQVGVNARGEAVFMSGRIDRL 1089 Query: 906 DLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKA 946 + V + DYK+ E A Q++ A L+ Sbjct: 1090 VIGPE-RVLVIDYKSNRPAPDTAEEAAADYQRQMAGYVALLRQ 1131 >gi|170717652|ref|YP_001783494.1| exodeoxyribonuclease V, subunit gamma [Haemophilus somnus 2336] gi|168825781|gb|ACA31152.1| exodeoxyribonuclease V, gamma subunit [Haemophilus somnus 2336] Length = 1144 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 85/761 (11%), Positives = 192/761 (25%), Gaps = 76/761 (9%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q ++ + E G + + + + D L + S Sbjct: 34 VILVQSGGMAQWIQWQIAEKKGISANLS---FPMPASFIWQLYVDNLSQVTASSQFSKEN 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE---- 163 L +I + + L S S LA +A++ D Sbjct: 91 MTWRLMEIIPHYID--QPEFYILRQYLQQSYQSSQQRYYQLASKIAELFDQYLVYRPEWI 148 Query: 164 KKWEDLHALKNEKYGMWWLLAADF----LKIASKY--WTERL-----------VELNASS 206 WE ++ + ++ ++ W L + N Sbjct: 149 ISWEQNKGVEIIQQIQYYQKNLSVSESCFSQVEQHIVWQGILWRALVCSVQKETQKNVLH 208 Query: 207 PVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 + ++ A K I + G + +S ++ H + + Sbjct: 209 RAHLHLLFLKHIAGEKPKNLPTRIFVFGISALPKVHLDTLSALSQHCDVHLFFNNACREY 268 Query: 267 PTAI-----WNTITEKSTNITSSNTTYST----------H--------------PQYSLA 297 I W + + H Q Sbjct: 269 WGDIIDQSHWQRLKVRERISWQDFQQPQNTQAWLSDAQIHTFEQNGFEQIYDEKLQVGNP 328 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD-ILENKIPNIQKCF 356 L + + R+ + L + + +S+ L ++K N+ + Sbjct: 329 LLSSWGKLGRDYLYLLTELEANEINAYVELSEKTLLSQVQARILDLVPSKHKFLNLAEND 388 Query: 357 SDVALIEADNEREEAISIAIALR----MSLDENKKKSALITADRNLARRVKLEL---TRF 409 + + E ++ L + D K ++ AD + + Sbjct: 389 RSLTFHSCYSPIREVQALQDYLLHLFNQAQDLTPKDVVVMVADIDKYAPYIQAVFSQGEH 448 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRA 467 I I+ S LLN L + T + HP+ + F + L++ Sbjct: 449 YIPYSIADSKLSENDPLVSAFLQLLNLKESLFSAEEVLTFLDHPVIRQSFNITLEDLAQI 508 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH---VPHWQSRLSEEDKELAVLLV 524 ++ +E +R Y L++ + ++ L + L Sbjct: 509 RHWVEHSGIRFGLEKYPQQSLQNYNAWQAGLERMLLGFAMREENGLWLDTLGFDDTYGLK 568 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 ++ + +T + + + + + L + ++ L Sbjct: 569 GQLVGYLKDFITRLYQWHQFLQVDHVIEKWEEHLIELMSSFFVVDGMDIPQQYKTTFNYL 628 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE---KSSTLFILGTLESRLLNF 641 ++ E ++I + + L R + F Sbjct: 629 IDTIQQLTELILDSSFQQEISAEVIYEVFVERLKDIPNSLKFLMGKVTFCTLLPMRSIPF 688 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYT 700 + L G+N+ +P+ N F + E + + Sbjct: 689 KVVCLLGMNDSDYPRQQTPNSFDLMQYHRKKGDRFRRDDDRY--LFLEALISAQQYFYVS 746 Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 R ++ S + +LL + +GQ L Sbjct: 747 YIGRSIIDDSEREPSVLVTQLLDYIAENINAQGDLKGQDIL 787 >gi|294669126|ref|ZP_06734210.1| exodeoxyribonuclease V, gamma subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308940|gb|EFE50183.1| exodeoxyribonuclease V, gamma subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 694 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 69/619 (11%), Positives = 144/619 (23%), Gaps = 55/619 (8%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L I V ++ + + + G + + L L+P Sbjct: 28 DPLQEEEILVQSQGMRRFIEHALAKSGGIAANL--RFSLPAGFNWRLMRELLPGIPELSP 85 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN--AIWLAKNLADIIDII 159 + + R RL+ ++ + + LS +S + A LA LADI D Sbjct: 86 FNTEVMRW----RLLELFFSDGLSASEYSAARQALSAYLSGGSVAAYQLAGQLADIFDQY 141 Query: 160 ETEEKKWED------LHALKNEKYGMWWLL-AADFLKIASKYWTERLVELNASSPVGYQI 212 W D L L ++ W FL + +++ Sbjct: 142 LVYRPDWIDAWQNGRLIGLGEDEI---WQAELWRFLDDGRQ-------------IAPHRV 185 Query: 213 ALMRAEAEHLMKG---TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 AL + L + + G P +L+ VA H I Sbjct: 186 ALWHKLLDALSAPGAKLPERLFVFGIATLAPMYLQLLQAVAQHSEVHIFALNPAAEYWGN 245 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 I + N ++ + + HP LL L + D S + + Sbjct: 246 IIEPA-QMLQNPDDTDLSQTGHP------LLASLGKQGRDFFNALTESELHTDLQVYADE 298 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL----DEN 385 ++ + + ++ A + E + L D Sbjct: 299 PLSDGLLHRLQYDIQTLSLPDGTAALDDSIRIVCAHSPLRELQILKEHLLQQFDCRPDLQ 358 Query: 386 KKKSALITADRNLARRVKLEL----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 A++T D + + + +S L +L Sbjct: 359 PHDIAVLTPDIEPYVPFIEAVFGEQSGRPLPYSVSDVKLSRRRPLLHALEQVLELFDSRF 418 Query: 442 DFMAIATLVKHP-----LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + L+ L +L + + L + Sbjct: 419 EADKVTALLDSEPVLTRFGLTREDLPLLHDTIASLNIHWGLDAEMRDGADPLFTWQQGLD 478 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + + + + +I WT+ Sbjct: 479 RLALGWLLPYGGGLWQGISPWHTDPGHTAVLSRFAAFIRRLAHWRQIWMQPENIGGWTER 538 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + ++ E+ +++ G + + I + L Sbjct: 539 VRKLAGELFTPTEDDGQSVRQLEQALARWHQEAELAGFGGKLPYSVINL-HLARFLGSQS 597 Query: 617 TVKPKIEKSSTLFILGTLE 635 S + Sbjct: 598 ETGFCAAASPSAAWYPCAP 616 >gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] Length = 1122 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 79/847 (9%), Positives = 200/847 (23%), Gaps = 127/847 (14%) Query: 151 NLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD-FLKIASKYWTERLVELNASSP-- 207 L ID IE K+ E + + A F + + + + Sbjct: 315 ALGSDIDQIENLMKRVESARDARLSLQALEKTRALTTFARAFLPKFEHKKLTHGWLDFDD 374 Query: 208 --VGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVA---------NH 252 + + L + I++ + + P ++ +A Sbjct: 375 LILKARQLLTDPAVSSWILFRLDGGIDHILVDEAQDTSPVQWDVVRLLAQEFTSGEGARA 434 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP----------QYSLAKLLDF 302 + D + + + + + + +S Sbjct: 435 DTQRTLFVVGDKKQSIYSFQGADPAAFDNMKHHFSDALSHIGEKIHDRKLLFSFRSSAPI 494 Query: 303 LDIKREDVKRLGNV-----------SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 L + + +++ GR + + P D TD ++ P Sbjct: 495 LRLVDTVCGNNPDAGFIQDLNHRAFHDDLPGRVDICAVVEKPEALPDQDWTDSVDRLPP- 553 Query: 352 IQKCFSDVALIEADNEREEAI-SIAIALRMS-----LDENKKKSALITADRNLARRVKLE 405 + ++ A E+ I A+ + L+ L + Sbjct: 554 -----QNELVVLASQIAEQIQSMIGTAITNAKGQTRAITAGDFLILVQRRSALFHEIIRA 608 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 + + + + + L L +LL + D +++A ++K PL + + Y Sbjct: 609 CKAAQLPLAGADRLKIGGELAVKDLGALLRFLDLNEDSLSLAAVLKSPLFGWSEQDIYSL 668 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + +++ + VL+ + + R+ L+ Sbjct: 669 AQGRE-QKYLWAELRDNAEKYPETVNVLNDLRKNADFLRPFELMERVLTRHGGRRALIAR 727 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + + N + S W + + Sbjct: 728 LGHEAEEGIDALLNQALVYEQNETPSLA------------------GFISWVDSGEIEVK 769 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + + + + ++ ++ + KS+ L I + S Sbjct: 770 RQIDSASDQIRVMTVHGAKGLEAPIVILPDTGSRRNDLKSNLLPIADGIVSW-------- 821 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 V+++ + + + + + Sbjct: 822 ------------KTLKEDAPSVVKTAREEALTRREDEGQRLLYVAMTRAEQWLIVYAAGK 869 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD---YTTKQPHYKRPKPFPP 762 + + S+ + + G L+ + ++ P Sbjct: 870 VDDKSWYSQIERGMQGAGAVQGPIGLRLESGDWTKTAHDIEIKTDVAHTLPEWATISAPA 929 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 S S++ K + RG + H ++ L Sbjct: 930 KARPKPPVSPSKLG-------------GSKALAGDGGLDEDAAMARGDVIHKMLEVLPLS 976 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + + + P ID + L + Sbjct: 977 PKEEWAS--------LAEKILADAPFPDVIDEVLF---------VLNDPDLAHVFAANTL 1019 Query: 883 VNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939 + + + + G DR+ + + + D+K+ P + QL Sbjct: 1020 TEVNITATLPELSDSQILGQIDRLIIEPD-KITLIDFKSNHTPAKTVNQVPDGLLRQLGA 1078 Query: 940 EAAALKA 946 AAAL Sbjct: 1079 YAAALAQ 1085 >gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23] gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23] Length = 723 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 78/720 (10%), Positives = 169/720 (23%), Gaps = 119/720 (16%) Query: 50 YVPTKRAIQELRSE--FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVSN 105 T +A E++ GK+ I + + + + + Sbjct: 55 VTFTNKAAGEIQQRIDLQLRHGKRGMW---IGTFHSLAHRLLRLHWNDATLPENFQVIDS 111 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +L + R+I P A+W I+ + E ++ Sbjct: 112 DDQLRLVKRVIQSL--------------GLNDTLFPPKQAMWW-------INTQKDEGRR 150 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + ++ W+ + ER + + Sbjct: 151 PEHIQPESHDD----WIETQR---RIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALL 203 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I+I + + +AN + D W Sbjct: 204 THYRSRFREILIDEFQDTNAIQYAFVRVLANDTG--HIFAVGDDDQAIYGWRGAKV---- 257 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 H Q+ L + + + + + Sbjct: 258 ---------EHVQHFLKDFPN-------------VQTIRLEQNYRSSANILDAANAIIAH 295 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADRNL 398 N D + ++ + L A NE +EA I R + + + A++ Sbjct: 296 NPDRIGKRLWTESGVGESIDLYAAYNEIDEARYIVERARQWVRDGGSYGEIAVLYRSNAQ 355 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R + L I + G+ + L + +D A +V P+ G Sbjct: 356 SRAFEEVLQSEHIPYRVYGGMRFFERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIG 415 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 V TQ S Sbjct: 416 ERTLD---------------------------EVRHLARTQGLALWDAAMACTQSTTLTA 448 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 A + L + L + ++L + + + Sbjct: 449 RARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSLDAESRQENLD 508 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 E S + + I ++ V + ++ ++ Sbjct: 509 ELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQV---QAGEEGVQLMTLHSAKG 565 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + L GL F S + E+ + + RH L Sbjct: 566 LEFPLVFLVGL---------ENGLFPSARSLDEHGRLEEERRLA-----YVGITRARHKL 611 Query: 698 IYTRSL----RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 I + + + + SR+L+ + + ++ Q L T++ + + Sbjct: 612 ILSYAQARRIHGKDNYNVPSRFLREIPQDLLHEVRPTIQVSHQPPLGATQRPAHDERDAA 671 >gi|254491576|ref|ZP_05104755.1| exodeoxyribonuclease V, gamma subunit [Methylophaga thiooxidans DMS010] gi|224463054|gb|EEF79324.1| exodeoxyribonuclease V, gamma subunit [Methylophaga thiooxydans DMS010] Length = 1069 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 98/944 (10%), Positives = 222/944 (23%), Gaps = 107/944 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 L L ++ +PL P L TI V + + L + + + Sbjct: 10 TGQLAAWLADHLLSEPLPP--LQPETIIVQSNELSRWLSLRLAKTHQIAANLE---FPFP 64 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + L L P + L L+ + + L Sbjct: 65 SAYIWQLFRQLWPDVPLQSPYAKEPMAWRLFELLPQAASLDGFE----AVAAYLGGDDDD 120 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 LA+ +AD D W W + + Sbjct: 121 LKRYELAEKIADTFDQYLMYRPDWVQQWEQG---QATSWQGKLWQM--------LTADDP 169 Query: 203 NASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 L + + I I G + P +++ +A + + + Sbjct: 170 QPMHRARLLQQLHDLLSHSDVVPPGLPNRISIFGISALPPVYLEIVNLLARYVDITLYYL 229 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 H I + ++ + P + L L + ++ Sbjct: 230 SPSEHYWGDIIDPKKQQRQQLLLDFNEDEIEPGHPLLASLGKQGQAFFRQLQETQHLDDS 289 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + ++ L D+ + + + + + E + L Sbjct: 290 CFVEP-VGETMLSQLKRDIFEMATDQPSVAVKDDTSISIQV--CHSPMREMEILHDQLLA 346 Query: 381 SLDEN----KKKSALITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILT 431 ++N ++T D ++ + I+ +L + Sbjct: 347 MFEQNPTLTPTDIVVMTPDIDVYAPWIEAVFATADKSRFIPFSIADSSGQQESLLITTFY 406 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSL 491 S L D +I +++ P + F + E + D D +L Sbjct: 407 SFLQLPQSRFDVESILAMLECPAVQRRFG-LDDAALNWIREWCQQTRTRWGLDANDKAAL 465 Query: 492 VLDRIA---------------TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLV 535 L N W+ + + HI+ + + Sbjct: 466 DLPDTESNTWRAGLDRLLLGYAMPLNEPDQPWRLFDGQLAMDGISGERAHIVAALCDFID 525 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNV--CLDEHRKLPNLWFEEEGKTLSSLFSKIIE 593 + +I+DW K CL L L S + Sbjct: 526 ALDAWRQRLARQNTIADWQKQLNQCLDAFFNTEGLEETQFETEITAIRTQLERLSSGAKQ 585 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 A + + + + + G + R + FD + L G+N+ V Sbjct: 586 ADFEQTIGADLILSWLQSHLQPVDNAHRFLGH-GITFCGMVPMRSIPFDVVCLVGMNDEV 644 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTI 711 +P+ F ++ + + + + +N Sbjct: 645 FPRRQPSVSFDLLAHDHREGDRSRRDDDRYL-FLEALLSAQQTFYMSYVGASVVDNSEIP 703 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK--------------------- 750 S + L L F + L ++ Sbjct: 704 PSVLVSDLQDLLAERFETETTATILEQIITKHPLQAFSRRYFDGNNDQLFSFNASHCPTQ 763 Query: 751 ---QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 + P P + R + ++ + P R L + + ++ + + Sbjct: 764 EMLEQANWFETPLPEADDSWRQVTRDQLIRFFAHPTKFILRERLGIR-LELDEEALESRE 822 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH---KIS 864 + E L + I+D + + ++ ++ Sbjct: 823 ---------------PFALDGLESWQLRQWIVDESLSQHSDEGLKPVVQATGMLPQGRLG 867 Query: 865 HSFLEHEEKIQSSI----EKIFVNIP---AKMAIESIGIHLTGF 901 ++ E E + + + + G + G Sbjct: 868 DAWFEKESQTVDDFIEKLRPVLPEQGWITLAIDLNIDGFQINGQ 911 >gi|300781190|ref|ZP_07091044.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium ATCC 33030] gi|300532897|gb|EFK53958.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium ATCC 33030] Length = 274 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 84/263 (31%), Gaps = 24/263 (9%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + P R I ++ + GTL H ++ E+ + T Sbjct: 9 ALSPSRANDYLQCPLKYRLRAIDRIPEPKT-----EAQVTGTLVHAVLEEMHAWPREERT 63 Query: 829 -PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIFVNI 885 P +K ++ LF + S L E + + + Sbjct: 64 YPAAVKRIKPAWQKMLIDDSSCADPIADEYALFVA-ARSLLRGYFEMENPHGFDSHAQEM 122 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + G+ + GF DR+D+ +G + + DYKTG P + + Q+ A Sbjct: 123 YVDAVLP-NGVPVRGFIDRVDIAPTGEIRVVDYKTGKKPSPRFSDEAK-FQMRFYALVYW 180 Query: 946 AGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 F I + L Y+++ + + E ++L ++ +Q+ Sbjct: 181 R-MFGTIPHQ--LRLMYLKVIDSLFLAPSREE---------LEFFERDLGDLWHKIQSDG 228 Query: 1006 QPFISHLRLSEKSNIQSEYDHLA 1028 Q + S+ + L Sbjct: 229 QSGNFRPKPSK-LCNWCSFQALC 250 >gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] Length = 742 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 75/697 (10%), Positives = 174/697 (24%), Gaps = 124/697 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + P+I + D+ Sbjct: 53 QILAVTFTNKAAGEMRERVERLVG--AGEAPLIATFHSTCARFLRRDIHHLGY------- 103 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + + L E L + A++ A ID + Sbjct: 104 ----------DSSFAIYDDKDAEKLLKEVIAGLGLDEKRFP--ARSFAAAIDDCKNRGIP 151 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 ++ + L + ERL + NA + +R EH Sbjct: 152 PGEIPTGDY---------TGEMLARVYGAYQERLKKCNALDFGDLLMLTVRLLEEHPEVL 202 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + P RL+ +A V+ D W ++ Sbjct: 203 ARYRDKYRWILVDEYQDTNPIQYRLVRLLAGERRNLCVV--GDDDQSIYRWRGADIRNIL 260 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + G V+ ++ + Sbjct: 261 DFEKDFP--------------------------GVVTVKLEQNYRSTQNILAAAGAVVAK 294 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 N + + + +EREEA + + + + A+ Sbjct: 295 NRGRKAKTLWSENPAGEAIVYRRLSDEREEARFVCREVEKHVRRGGDLRDVAVFYRTNAQ 354 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ + GI + G+ + + + L + D +++ ++ P Sbjct: 355 SRVIEDAMVADGIPYHMVGGMRFYERMEVKDILAYLKVLVNPADEVSLKRIINVP----- 409 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + +A R YD + Sbjct: 410 -ARGIGHATVDKVAELAFRKGIILYDAFS----------------------------EAS 440 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC-LDEHRKLPNLWF 577 + LL I + G + +S+ + L E R Sbjct: 441 TSGLLSTGPRGKIAGFMALMEQFAGLAGTVPLSELASRIIDGTGYAAKLKEERSDEAQDR 500 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + L S + T + ++ ++ K + ++ ++ Sbjct: 501 LDNLQELCSAMEEFERTSDE-----KTLAAFLEQVALVSDLERGEGKRESATLMTLHAAK 555 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F + + G+ E ++P + L E + + R Sbjct: 556 GLEFPVVFMIGMEEKLFPHVRS--------------LDDPEAMEEERRLCYVGMTRARER 601 Query: 698 IYTRSLREN-----NIPTIASRWLQRLLVLGGTDFFD 729 + + R + ++SR++ + + Sbjct: 602 LILTNARRRRLFGQDQVNMSSRFIADVPRDLLDLEDE 638 >gi|145640609|ref|ZP_01796192.1| phosphopyruvate hydratase [Haemophilus influenzae R3021] gi|145274535|gb|EDK14398.1| phosphopyruvate hydratase [Haemophilus influenzae 22.4-21] Length = 1126 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 118/977 (12%), Positives = 241/977 (24%), Gaps = 130/977 (13%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + +Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMVQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P L RLI I+ K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMTWRLMRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + D +W + + + + K + W +V+ Sbjct: 136 LFDQYLVYRPEWIFAWEKGEDEQITDQIQKQQPNLNDTLFAQIQGNTKWQGELWRSLVVD 195 Query: 202 -----LNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVNEATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA------------------ 297 + I + + + Q + Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRKRYQFNKQDENQPLFSEDQLSQLENAQFDVTYQK 315 Query: 298 ----------KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN 347 + Y + LEN Sbjct: 316 ENLQLGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + S +LL + L+ P + Sbjct: 436 QAVFGQKNGGAPQIPFSLSDNKLSENDVLVSSYLTLLGLKESNFSAEDVLALLDIPAMRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGKLSQFFTVLSALYETLQQAH------SIEKWQEILTALLSDFFVR 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + ++I +I + Sbjct: 610 NEDTSDMIFYIQ------EKINELAEHLKTLHFTEELQAEVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY- 722 Query: 685 AHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC---- 737 E R + R +N P S + +LL +N+ + Sbjct: 723 -LFLEALLAARDYCYISYVGRSITDNQPKEPSVLVSQLLDYINQGQNENVLTVTEHPMTA 781 Query: 738 ----------------YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 W + + + + + + + Sbjct: 782 FSPDNFKYNEKFTRSFATKWLPIAQFDASSNNSEFAVTMTENPEKIEEVELDSLVSFVEN 841 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 P + + L + F ++ D + TL + + N Sbjct: 842 PVKFFFEKQLGVYFRDKDERIADSENF-TL--SGLDNY--SLNNDLIYLDEQNFTDYFRQ 896 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE----SIGIH 897 K LP + I + LE ++KI E +I +A++ + I Sbjct: 897 AEVKGVLPRA--EFGKVYAENIRDNVLEFKKKIADLGEPKQASIDFNIAVDWQNENQKIR 954 Query: 898 LTGFADRIDLLKSGFVD 914 L G+ D + S + Sbjct: 955 LFGYMDALFGDDSQVIH 971 >gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] Length = 1117 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 89/838 (10%), Positives = 209/838 (24%), Gaps = 96/838 (11%) Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 L + ++ +ET + L L + FL ++ R Sbjct: 300 LMDRIEPLMARVETARSRRLALELLDRTVALHDFARL--FLPDYARAKMLRGAMDFDDLI 357 Query: 208 VGYQIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTVANH---------PN 254 + + L + + I++ + + P +++ +A Sbjct: 358 LRARDLLTNQDVSAWVLFRLDGGIDHILVDEAQDTSPVQWQVIQALAREFTSGAGAQDDK 417 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 + D + + + + + R L Sbjct: 418 TRTIFVVGDKKQSIYSFQGADPSEFDRMREEFDDRLTALGTPLQRMALAHSFRSAPALLA 477 Query: 315 NVSNEMYGRSMVIS-------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL-IEADN 366 V GR + + + + V L E D+ Sbjct: 478 LVDKVFEGRVEAGFSPDETHIAFHETLPGRVDLWPLVEKVENTEEGEWDDPVDLPGEQDH 537 Query: 367 EREEAISIAIALRMSLDEN---------------KKKSALITADRNLARRVKLELTRFGI 411 A IA +R +D+ L+ R L + + Sbjct: 538 NVVLARRIARTIRGMIDDRTPLPLGDGTARPIHAGDILILVRRRRRLFHEIIRACKGEDL 597 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNAL 471 +I + + + + LT+LL+ + +D + +A ++K PL + + + Sbjct: 598 DIAGADRLRIGAEIAVKDLTALLSFLATPDDDLGLAAVLKSPLFGWDEQMLFDLAHRRET 657 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 L + + H E E ++ D + + Sbjct: 658 ----------KRLWPALDAREDHAETRRILRDLRDHADFLRPYELLERVLIRHDGRRRLM 707 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 L T + + +++ +W + + + Sbjct: 708 ARLGTEAQDGIDALLDQALAY----------ERTDVPSLTGFLVWLQGDDPEVKRQMESA 757 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + + + ++ + + + + L + D + Sbjct: 758 GSRIRVMTVHGSKGLEAPVVFMPETQARREELRGEVLS----------DDDLVW------ 801 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 W + P L ++ K E+ M + LI + Sbjct: 802 --WNMPAREAPPLLAGLREAKLRKQREETDRL--LYVAMTRAEKWLIVAAAGELGKSGDT 857 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 ++ + G G + P + +P P A Sbjct: 858 WYERIRDGMTALGAAPLIRPDGEGLRLESGDWQGLTPIDPPARQDRRPALPDWATRPAPR 917 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + + ++ A+ + + + RG H ++ L + Sbjct: 918 AAAAPRTLSPSELGGAKALPGEEGLDEEA----AKRRGRQIHRLLEHLPGVPETELAD-- 971 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + F + P + L + L + V + + Sbjct: 972 --------RAAFVLGHGPDAAEGEELALLTGEAQRILFRPNLRHLFGPEALVEVSVTADL 1023 Query: 892 ESI-GIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 +++ G + G DR+ ++ + V DYKT + E + Q+ AAAL Sbjct: 1024 DALDGRRIHGTIDRL-IVGNETVLAVDYKTNAVVPDRPEQVPDALLRQMGAYAAALAR 1080 >gi|184200504|ref|YP_001854711.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201] gi|183580734|dbj|BAG29205.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201] Length = 1241 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 53/421 (12%), Positives = 107/421 (25%), Gaps = 35/421 (8%) Query: 30 LVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKF 89 +VE + + + P++ + LR + P++++ + Sbjct: 57 VVEGVVRRIADGTDPQRMLVLAPSRESAATLRDLVSRRAA-ATISTPLVRAWQAYAFDVL 115 Query: 90 TA----DLLLSYNLNPPV-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 +LL +L P + S ++ LA ++ L + Sbjct: 116 RRAQAEELLTGIDLPPVLLSGPEQDAFLAEMMRGHATGLG------GAVVWPADLQDALG 169 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L ++ D + + E L A W AA F + L N Sbjct: 170 TRGFRGQLRELFDRMNEYRVEPEQLAAWAGPLGHPEWRAAAAFRTEYQQV--RALRMPNV 227 Query: 205 SSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 P R EH + +++ + P+ RL+ + G + Sbjct: 228 FDPSELVDRAARVLEEHPDFLSREQQRLDVVMVDDLQEATPSVHRLIGVL---CRGRDAV 284 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---------LLDFLDIKREDV 310 + + +HP L + + V Sbjct: 285 FTANPDTTVQGFRGARPDLLRTLEDRVGTPSHPVQRLHLHTSHRMSLPVNEAWQRVARAV 344 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + E + D +D N + V + + + Sbjct: 345 PVIAGARTERAPEQPADTDPEPGGDPADGVNAPVTGPGTAGRLVTPDGVRVATFASPTAQ 404 Query: 371 AISIAI---ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG-IPLSTTLH 426 A A L + ++ A+I + +L G+ SA PL Sbjct: 405 ARWCADHFLRLHVLRGIPYREMAVIVRSGPQLSALTRQLASLGVPTTTSAAETPLRDEPA 464 Query: 427 S 427 Sbjct: 465 V 465 Score = 90.8 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 65/531 (12%), Positives = 142/531 (26%), Gaps = 73/531 (13%) Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + +R + +L++ L+E + A + D + Sbjct: 615 PMEVRRIRQRLRGYELRTGGGRTSDDLLVQALGDGLLLELAEVRSDAAARVADMLQAGQD 674 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 L T ++ + + + + + + L + + Sbjct: 675 ALDTPGATAE--SVLWALWEASGVGPRWRRRALAGGAEAVRADRDLDAVVGLFEAAERFV 732 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 + A+A + + + +T+ + + + + + +++ G+ +G Sbjct: 733 DQVPGATASAFM-EYMDHQELPMDTLAARAPAEDNVSVTTPAGAAGREWSHVVVAGVQQG 791 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL--------------I 698 VWP + L + +D E+ + A D L Sbjct: 792 VWPNTALRGQLLGTDVLTDALDHGPEQAVRLGAVDRLRQVRFDELRQFATAVSRARSGLT 851 Query: 699 YTRSLRENNIPTI----------------------ASRWLQRLLVLGGTDFFDNLKKRGQ 736 T ++ P+ R L + + Sbjct: 852 VTAVATQDEQPSEFVDLVALGRGEETGITVEELDAPEPLTLRQLTGTLRRALNAVDTPET 911 Query: 737 CYLDWTRKLDY-TTKQPHYKRPKPFPPL-------------EAQPRTYSFSEIKQLINDP 782 R L T Q P +P S S+I+ + P Sbjct: 912 EREAAARLLHEFATAQDPVAGAAPEQWWGVNPLTTEEALFDAEEPVRVSPSKIETVHRSP 971 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 + + + GTL H+I + + L+ ++ Sbjct: 972 LDWFVG------EARATETTDLKRGLGTLVHDIAEHMP-------DADAVELITELRRRW 1018 Query: 843 FEKENLPPHIDIIWRHLFHKISHSFLEH--EEKIQSSIEKIFVNIPAKMAIES--IGIHL 898 + F ++ E + + E + V ++ + L Sbjct: 1019 PSLGMPEGWTGAQELERAETMLRKFAQYAREMRTRHERELVAVEGGFQVLVRDSARDALL 1078 Query: 899 TGFADRIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKAGS 948 TG DR+++ G + D KTG P + PQL+ AL+AG+ Sbjct: 1079 TGRVDRLEVDAHGRHVVVDLKTGRHKPTGADIPEH--PQLAAYQVALQAGA 1127 >gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] Length = 868 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 76/710 (10%), Positives = 193/710 (27%), Gaps = 97/710 (13%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD-----VVEEKFTADLLLSYNL 99 + T +A E+R + G ++ + + + + E+ A L S+ + Sbjct: 100 GEILAITFTNKAAAEMRERVANLVGPQARRM-WVFTFHSACVRILREQYQAAGLRSSFTI 158 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 + RLI + L K AK LA I + Sbjct: 159 YDAADSQ-------RLITLVSKNLNLDTKRFT-----------------AKLLAARISDL 194 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 + E W+ + + K++ +L E N + +++ Sbjct: 195 KNELITWQKYQETAAND------PVSKAVAQVYKHYQRQLNEANVLDFDDLIMTVVQLLQ 248 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA---IVLPGLDCHIPTAIW 271 ++ + I++ + A L+ + + D + Sbjct: 249 KNPAVAEHYRRRFRHILVDEYQDTNHAQYVLVRELIGTGADVPAGELTVVGDSDQSIYAF 308 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 T ++ + T + + Sbjct: 309 RGATIRNIEEFEKDFTN--------------------------AHTVVLEQNYRSTQNIL 342 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS--LDENKKKS 389 + +NT + ++ AD+E +EA ++ + D Sbjct: 343 SAANAVIAKNTGRRAKALWTSSGAGELISYDAADSEYDEARAVIQEIDRLTPFDFKYGDI 402 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 A+ + +R ++ L R GI + G + L I +D +A+ + Sbjct: 403 AIFYRTNSQSRALEEHLIRAGIPYRVVGGTKFYERKEIKDALAYLQVIANPDDTVALRRV 462 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 + P G + ++ + I R ++ + WQ Sbjct: 463 INTPRRGVGDKAEAAIATHAEMQGIGFGAAVQQVWI----QQGCPRGESEGLDISEGDWQ 518 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + +SE + + + + + + + + ++ L + Sbjct: 519 NAVSEALTQTPASVSGITTRALNAVANFWGLIEAMQIFARTNTIAEVLDQVLDLTGYLDE 578 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA--IEWIDIITRLIDGETVKPKIEKSST 627 + + + + + ++++ + + D + V + E S Sbjct: 579 LRRSTDPQDMNRVENLAELHSVAADFATTNPQGQLHDFLERVALVADADQVASESENSGE 638 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + ++ ++ L F + + GL +G +P + L + + Sbjct: 639 VTLMTVHTAKGLEFPVVFVTGLEDGTFPHQRS--------------LMDPSELAEERRLA 684 Query: 688 FEMANGTR-HLIYTRS----LRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + R L +R+ SR+L+ + + + Sbjct: 685 YVAITRARKKLYLSRAAVRSAWGTPTDLPPSRFLEDIPAELMEVRRAHTQ 734 >gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] Length = 1182 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 84/814 (10%), Positives = 201/814 (24%), Gaps = 79/814 (9%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKG--------PIIIA 233 A + + E + + I++ Sbjct: 357 RAALTLAERLDHDYEELKKRSSQLDFEDLIARTAELLTRSTVGPWVHYKLDQGIDHILVD 416 Query: 234 GSTGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + + P ++ ++ P D + + + + Sbjct: 417 EAQDTSPVQWSVIRSLREDFFSGQSARPVRRTFFAVGDEKQSIYSFQGAKPERFSQEARE 476 Query: 286 TTYSTHP-------------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFL 332 T S +L +D + +S + S+ Sbjct: 477 TEQEVARGSESFSAVRLPLSFRSTNAVLSAVDQVFSVTENARGLSAVAEPVVHMSSRIGH 536 Query: 333 PPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--------- 383 P ++ D A + A IA + + L Sbjct: 537 PGAVEVWEMIAPEGSESEEDWTAPFDATPENAPS-AMLARRIAQRIEIMLARETIVEKGV 595 Query: 384 ----ENKKKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 E L+ + L R I + + + L+ + L +L + Sbjct: 596 ERSIEAGDILILVRKRGAFVNALTRALKRRSNIPVAGADRLRLTGHIAVQDLLALGRFVL 655 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 D +++A L+K PL + + A+ V + + + L R+ Sbjct: 656 FTADDLSLAALLKSPLFNLSEDDVFEVAARRGEISVFAEIARLAEAGSEKWQAALARLHR 715 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 L + L + ++ ++S Sbjct: 716 YVALARDLLPHDFYGRVLGPLGGR-----RDFLARLGSEVSDIIDEFLTFTLSHEQAGLP 770 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + E +++ ++ + + ++A + +D + Sbjct: 771 GLQSFITTLEQEAPEVKREQDKERSEVRIM--TVHASKGLEAPIVFLVD-------DGSK 821 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL---NLK 675 ++ T + + ++ + ++ AK L + Sbjct: 822 AFNHTHLPKFRMIETGAQPQECPVWVPVKAVDNPLTAEDVAKRKQAIEEEYRRLLYVGMT 881 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 A + + + S E + + ++N G Sbjct: 882 RAADRLVVCGYRGKQVQTEIWHQMVWSALELDTERCRQQGFGGPEGDWTGLLWENAVVPG 941 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 + R+ + +P PP PR S S +ND L+ Sbjct: 942 RFERQEKRQEKRELETLPEALLRPAPPPPRLPRPLSPSGAGIEVNDEDGDML---LRSPL 998 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + +G L H ++ L ++ P ++ P Sbjct: 999 FSKGEDAGLALQKGRLVHRMLQMLPGLPADERKPAARRYGERAAR-------FWPAH--- 1048 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIP--AKMAIESIGIHLTGFADRIDLLKSGFV 913 R + + L+H + + + + ++ DR+ + + V Sbjct: 1049 ERDRLVESVLAILDHPALSEVFSSHAQTEFSLMGTIRLGAEQRAVSARVDRMAVT-NEKV 1107 Query: 914 DITDYKTGDNPKKETAQKLI--DPQLSLEAAALK 945 + DYKT P ++ ++ + QL++ LK Sbjct: 1108 ILLDYKTNRQPPRQESEVPLSHSAQLAIYRELLK 1141 >gi|288959584|ref|YP_003449925.1| hypothetical protein AZL_027430 [Azospirillum sp. B510] gi|288911892|dbj|BAI73381.1| hypothetical protein AZL_027430 [Azospirillum sp. B510] Length = 909 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 87/837 (10%), Positives = 198/837 (23%), Gaps = 53/837 (6%) Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANH 252 + L L A + A + + ++ AG G+ PA +ST+A Sbjct: 58 QFLARLRAVDDGARFFSAALAADGWAVAALILGWRDALVEAGWVGADPAGGERLSTLAAV 117 Query: 253 PNGAIVLPGLDCHIPT---AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 L + T + LLD L Sbjct: 118 ERADGPLAPGRADRLRALLDALAGLPPALPVSELRLATPAGLLPPGWRLLLDRLAAAGVR 177 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + E + L + E V ++EAD+E Sbjct: 178 ILPCKEGGKEGGKEGDALGAGDLAALGRRLAGDRSAE------ADGDGTVTVLEADDEWM 231 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 A +A L D N + L+ + R G+ AG + + Sbjct: 232 AAEVVAGWLAARPDLNHQ---LVIVRGQRTTLLDEACRRLGLPRPGGAGRS-PWRGAAQV 287 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L A+++ D + L+ P + + Sbjct: 288 LPLAFAALWEPLDAHRLMELLTLPQSPIPSGVAEA-----------FADALVKAPGIGGP 336 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + + +E + + +T ++ Sbjct: 337 VWQEAWRTARDRRRARLEARGLSGKELERRLAAEEREWRGWLESARFPETAGVPVPTAVA 396 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + ++ + + + ++ + + + ++ Sbjct: 397 LCGRVAAWARGRAAP-RPGNQGGERDEMLDAVADQAETMAAVVAACGLPRLSRPQLDRML 455 Query: 610 TRLIDGETVKPKIEKSSTLFI-LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 ++ P + + + T++ G E R+ Sbjct: 456 DMVVADGVAVPAGGAEAAAWATVDDPGQIWGAAGTVLWWGFVEPAATHPAIPWSNAERLA 515 Query: 669 QSDLNLKTAEKYIGQAAHDFEM----ANGTRHLIYTRSLRENNIPTIASRW-------LQ 717 + A + N LI + R T L Sbjct: 516 LAGAGCLPEPAGARLAREAWAWRLPLLNAVDRLILVKPRRIAGEVTADHPLWHEIGPALA 575 Query: 718 RLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 R L + ++L+ R + A P S + +++ Sbjct: 576 RCPPLSAGAALTADRLTFAGRTLTRKELEPGVPPQPRARWRVPAGAVAVPDRLSATSLER 635 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQ 837 L+ P A + + G+L H ++ L+ +R + + Sbjct: 636 LLGCPLAWVLHHVAGIRSGVLRAIPDGVRLLGSLAHAVLAALLTERPDWTPDDAATRAAA 695 Query: 838 IIDSHFEKENLPPHID------IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 + D P R + + + + + + + + + Sbjct: 696 LFDRLLPALAAPLLRPGLGLEMERARAGVAEAARRLVVLIAE--AGLRVRGCEVAVEADL 753 Query: 892 ESIGIHLTGFADRIDLLKSGFVDITDYKT--GDNPKKETAQKLIDPQLSLEAAALKAGSF 949 G+ L G D + +G + D K GD +++ + QL++ + + Sbjct: 754 --GGVTLEGRIDLLLETAAGAPVVLDLKWSGGDKRRRQEIAEGRAVQLAVYGRLVGGEAG 811 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + + L + + + L +G+ Sbjct: 812 PAVPAGYMMLAQQRLLACAPAPFPPHLHVPGSDLPAVWRAAWSGRSAALERLADGDI 868 >gi|152968346|ref|YP_001364130.1| ATP-dependent nuclease subunit B-like [Kineococcus radiotolerans SRS30216] gi|151362863|gb|ABS05866.1| ATP-dependent nuclease subunit B-like [Kineococcus radiotolerans SRS30216] Length = 1045 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 93/780 (11%), Positives = 202/780 (25%), Gaps = 107/780 (13%) Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 A + S L + + ++ + Sbjct: 159 AYRGHLGAALPEARLLEVAVEALAAGSAPDTHVVLVAPGRRTRAEDRLLAALHAAGRLSV 218 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 DT+ + P + V L+ A + EE ++ L EN Sbjct: 219 LCCDAQDTAWAAELLGQQVAPPAEGAATAYVDLVVAPDPEEEVRLAVRSVLAHLQENPAR 278 Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFM 444 + T+ R AR + +L+ G+ + L+ T+ L LL + Sbjct: 279 PDRIGIAFTSSRPFARLLAEQLSTAGLPHHVPGQRTLAQTVAGRTLIGLLELHRRGYPRA 338 Query: 445 AIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTH 504 ++ + + A S L + Sbjct: 339 DVSAFFASGPLLTADGTYVPASTWERVSRTAGATRGLSTWRQRLDRFEQQGPRHTGDEES 398 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + + L + + + T+ + L + + +V Sbjct: 399 IRQVA---AARSLRLTLDGLAAAAEAALGAPTWAHAAEALRVALRVCLGDRRSVDGWTLR 455 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 + ++ L + ++L + + +A D +T + G Sbjct: 456 AEADLQRAVELEQQAHDAVDTALGALAQLDATGQGPDAAAVRDAVTDAL-GTAAPSATVL 514 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN---LKTAEKYI 681 + + E + D L++ GL+E P ++P L + L+ A + Sbjct: 515 GRGILVGPVREFAGADLDLLLVLGLSEDAAPARQREHPVLRDADRELLSPDLATLASRRA 574 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTI--ASRWLQR--------------------- 718 + ++ + + + AS W Sbjct: 575 DEQRAWRAALRTAPQIVLSCARANSRTQRRQFASPWFLEQASLRAGRPVGAGEVDSPGSA 634 Query: 719 --------------------------------LLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 L + + + R Sbjct: 635 LPGLRSYDSFVDALDRGGEFTSVHELDAARTVLAGAVDELAAADPRLQRGLVAARARARG 694 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPD 804 P E R +S + +++ P R +L++ + + Sbjct: 695 EFGPWTGGTEELPEGLRERVDRGHSATSLERWATCPARHLFRDVLRVGRLEEAAEHDSVS 754 Query: 805 RTDRGTLFHNIITELIKKRIN-----------KNTPEINHLMKQIIDSHFEKE------N 847 DRG+L H+++ E ++ + TPE ++D+H + Sbjct: 755 PADRGSLLHDVLEEFLRPHLGTPEQPGRSPDAAWTPEEVQAALDLLDTHVARLERRGGLG 814 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAK------MAIESIG-IHL 898 P + + + L + +++ I V + + + G + L Sbjct: 815 RHPALWPVQLRELRRQVADLLAADSARRAAERSWPIAVEAAFGDEDALVLDLPTQGALRL 874 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKET-------------AQKLIDPQLSLEAAALK 945 +G DRID +G + + DYK+G + + QL L A A + Sbjct: 875 SGRIDRIDATAAGGLVVQDYKSGKSSSYGEFPKRGAAADDTDLTDRGRRLQLPLYALAAR 934 >gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] Length = 812 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 85/691 (12%), Positives = 191/691 (27%), Gaps = 123/691 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A +E++ +G + E L V Sbjct: 94 GQILAVTFTNKAAREMKER-----------------IGAYIGENVEGMAWLGTFHAICVK 136 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + + W AK A ++D + Sbjct: 137 ILRRHAELVGLKSSFSILDTDDQVRLIKQ--IIQAEGLDEKRWTAKTFAGLLDSWKNRGL 194 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKI-ASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 E + A+ L + + ERL LNA + + EH Sbjct: 195 TPEQIS-------AGEAQAFANGLGRKLYQTYQERLSILNACDFGDLLLHCITIFKEHDD 247 Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + +++ + A + +A + V D W + Sbjct: 248 VLKSFQSRFRYMLVDEYQDTNIAQYMWLRLLAQ--GNSNVACVGDDDQSIYGWRGAEVDN 305 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + +T + ++R +S + + + T Sbjct: 306 ILRFEQDFPGAT-----------VVRLERNYRSTSHILSAASHLIAHNQGRLGKTLFTDQ 354 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITAD 395 + + V + A + +EEA SI + +L + + A++ Sbjct: 355 V------------GSEDEDKVQVASAWDSQEEARSIGDEI-EALQNHGHSLNEMAILVRA 401 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 R + G+N + G + + + + +D +A +V P Sbjct: 402 SFQMREFEDRFVTLGLNYRVIGGPRFYERMEIRDALAYFRCVMQPSDDLAFERIVNTPKR 461 Query: 456 KFGFPEKYLSRA-KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G + A + + +L+ Sbjct: 462 GLGEATLKIVHAYARERAIPLMIAAGELVQTNELRPKA---------------------- 499 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + ++ N + +S ++ ++ + + Sbjct: 500 -------------RAALADVLGMFENWRNQVETMSHTELAEIIL---------DESGYTQ 537 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 +W ++ + E ++ + +++ I+ ++D ++ + + I+ Sbjct: 538 MWRQDRSAEAPGRLDNLKELIRSMEEFESMAGFLEHISLVMDKDS----DVEEDAVSIMT 593 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L FDT+ L G EGV+P A + + E+ A Sbjct: 594 LHSAKGLEFDTVFLPGWEEGVFPNQRALD---------ETGQAGLEEERRLAYVGLTRGR 644 Query: 693 GTRHLIYTRSLRENNI--PTIASRWLQRLLV 721 + +T + R + I SR+L L Sbjct: 645 KRVKVWFTSNRRIHGSWQSCIPSRFLDELPA 675 >gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] Length = 1164 Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 121/1087 (11%), Positives = 255/1087 (23%), Gaps = 155/1087 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEI---TGKKSTILPIIKSLGD---VVEEKFTADLLLSYNL 99 V T+RA EL ++ I P + ++G+ V + + ++ + L Sbjct: 77 QVLGLTFTRRAATELAGRIRRRLTQLARRRVIDPEVLAVGEPTVVTYDAYAGRIVADHAL 136 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V RL+ A + + D LS LA LA + Sbjct: 137 RLGVEPGLRLIGQAASWQ-FARRAVDAYDGPMDAVTLSPTTVTNRVFILAGELAQHRVDV 195 Query: 160 ETEEKKWEDLH----------------ALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 E+ + + L A E+ L L I + R + Sbjct: 196 ESVAEFCDQLAAKLCALPYPRGRSRTMAEDVERIVDQLKLRRQLLPIVVD-YRARKRDAE 254 Query: 204 ASSPVGYQIALMRA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 E + +++ + A + + P A Sbjct: 255 VLDFADQMALAATLAELFPEVGAAERAAFRAVLLDEFQDTSHAQLDFLRALF-LPKTAP- 312 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 P + W ++H + + + S Sbjct: 313 -PDAESPAAAQPW-LTVVGDPAQAIYGWRGASHGTFRALIAEAPCAVTVFPLATSFRNSP 370 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---- 374 E+ + +I++ + + P + + +E + Sbjct: 371 EILAVANLIAEPLRAGRDTTAVPVLRPRDDAPVGEARCACYPTVEDEAAAVAEYVARVLR 430 Query: 375 AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 E + A++ ++ L G+ I I L + + L Sbjct: 431 EDEAARQAGEPGRSIAILLRKWRQLLPLEPALRARGVPIRILGVGGLLDQPEIEDVVATL 490 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA---------------LELVALRGN 479 + + A+ L+ + G + L R Sbjct: 491 QVLVDPDRGDALMRLLTGARWRIGAADLAALHRWARRCAAADDRAATESQTLHGPDDRAA 550 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 S ++ + RL E + + Sbjct: 551 TESQTSHGPDDAGAPLGGDAADSLSLVDALDRLRTERWVTQSGWFSVEGGRRLARLADEL 610 Query: 540 NKNSTCGNLSISDWTKLTVTC--LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + + + + D + + L + + + + Sbjct: 611 HHLRSRLSQPLPDLVAEVIATIGVDVEVLARGEQPGRSNLDAFLEVAADYADAAENPTLG 670 Query: 598 IKANAIEWIDIITRLIDGETVKPKIE--------KSSTLFILGTLESRLLNFDTLILGGL 649 + +E R +D + + + +L ++ L +D + + G+ Sbjct: 671 GFLDYLEAAGYAERGLDRPEDDAAVAFDAAAGERRPGVVDVLTVHAAKGLEWDVVCVPGM 730 Query: 650 NEGVWPKNTAKNPFL-------------SRVMQSDLNLKTAEKYIGQAA----------- 685 +GV+P R +++ TA+ A Sbjct: 731 VDGVFPTGVRNTTGWLTSAHLLPWPLRGDRDALPSIDMTTADDQSAVVALLKDFAEAVKC 790 Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 H ++ TR+ R RW + F WT Sbjct: 791 HALAEERRLAYVAVTRARRWLF--CTGYRWDDTTRAHADSAFLTGDVLGAMRVECWTPVP 848 Query: 746 DYTTKQPHY---KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------- 794 D T P R +P R L+ D AV + D Sbjct: 849 DDGTANPRLVDGPRRVAWPVDPLGSRRPQVERAAALVRDAVAVAGEPMSGRDDGSAEALT 908 Query: 795 --FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN---------------------TPEI 831 + P + ++ ++ E Sbjct: 909 GGEAEPRPRTPIPATQWEQVDGWSRDIAVLLAERSRATEQSAVVLPEQLSVTQLVALRED 968 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHK---ISHSFLE------------------- 869 + +P H + + + L+ Sbjct: 969 PSRFAARLRRPLPNRPVPSARRGTAFHRWLEQRFAAPRLLDVDELPGAADSDAAPDDELE 1028 Query: 870 -----HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP 924 E +S + V +P + ++ + G D + G I D+KTG P Sbjct: 1029 ALKTAFLESHWASRHPVDVEVPFHLVVDGR--VIRGRMDAVFADPDGGFTIVDWKTGRRP 1086 Query: 925 KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSAD 984 + + QL A S + +V + L+ ++ + Sbjct: 1087 RG-EYAEAAAVQLGAYRLAWSE--LSGVPLERV-RATFCYLRDGGDYAPADLLDRRGLME 1142 Query: 985 ELSEKSL 991 L+ ++L Sbjct: 1143 LLAARTL 1149 >gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ] Length = 752 Score = 99.6 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 77/693 (11%), Positives = 189/693 (27%), Gaps = 119/693 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 V + +A +E+R + L I + ++ Sbjct: 55 QVLALTFSNKAAREMRDRIGSMVEADVGAL-QITTFHAFCARILRSEAN--------YLG 105 Query: 106 IQRLLELA---RLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + R + + + L SP + + L I + E Sbjct: 106 LSRNFTIYDTSEQKAVVKAILGRHGISTKEVSPFEVLYYMDDLKNHGHYLGRDISECDYE 165 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220 + F + + L + NA +++ + Sbjct: 166 ---------IDQGD---------SFFT-FYQEYEAELHKANAVDFGSLITGVIQLFEKFP 206 Query: 221 ---HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + +++ + A L+ ++ V+ D W + Sbjct: 207 DVLKRYQERFKYLLVDEYQDTNRAQFELVKMLSEQNRNVCVV--GDEDQSIYSWRGADIR 264 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + + L+ K + + + R+ Sbjct: 265 NILDFEEVFSDAK---------ILKLEQNYRSSKNIIEAATHVIARN------------- 302 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395 + + D+ ++E N++ E +A +R E K+ A+ Sbjct: 303 ----SQRKGKDMWTNNPHGEDIDIVECFNDKTEGEFVAQKIRELSKEGHPFKEMAVFYRT 358 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R ++ L + I + G+ L + + + D +A++ ++ P Sbjct: 359 NTQSRLIEDNLRKNNIPYRVVGGVKFYERKEIKDLIAYMRIVVNEKDSLALSRIINVPAR 418 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + L ++ +A +N H+ Sbjct: 419 GIGATTLRKLENEAVTNN------------CSLWEMLDTVVANPENYKHI---------- 456 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 L + ++ LVT + N++ S + ++ D + + Sbjct: 457 ------RLSAKVKSALSHLVTLINEVRVSVDNVAPSSLYEKL--LHESGYWDFLKSSKDY 508 Query: 576 WFEEEGKTLSSLFSKIIETGSCIK-ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + L L + I++ K + + +++ IT +D E + + ++ Sbjct: 509 ESQARMENLEELQNAIVQYEESNKSPSLLNFLETIT--LDTSGEGDNPENTGEVSLMTIH 566 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-- 692 ++ L F + + G E ++P + L+ E I + F +A Sbjct: 567 GAKGLEFLHVFVTGAEENIFPSYKS--------------LENGETAIEEERRLFYVAMTR 612 Query: 693 GTRHLIYTRSLRE----NNIPTIASRWLQRLLV 721 L T + SR+L + Sbjct: 613 AMEKLYITFAQGRMLFGQLRFNGPSRFLHEIPN 645 >gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium] Length = 1118 Score = 99.6 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 75/813 (9%), Positives = 191/813 (23%), Gaps = 114/813 (14%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAG 234 DF + R + ++ + I++ Sbjct: 334 ALYDFAAEFLGTYRARKQARGFLDFNDLIMRTRHLLSDERVATWVLFRLDGGIDHILVDE 393 Query: 235 STGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 + + PA ++ +A + D + + Sbjct: 394 AQDTSPAQWDVIRLLAQEFTSGEGARADVPRTIFVVGDKKQSIYSFQGADPDGFDRMRDQ 453 Query: 286 TTYSTH----------PQYSLAKLLDFLDIKREDVKRLGNV---------SNEMYGRSMV 326 + H YS L + + + ++ GR V Sbjct: 454 FSQKLHEIDQPFQSTTLDYSFRSSSAILGVVDQVFANRSGLGSGSAHLAFKADLPGRVDV 513 Query: 327 ISKSFLPPDTSDMRNTDILENKIPN-----IQKCFSDV--ALIEADNEREEAISIAIALR 379 P T + D ++ + + + LIE + + + A R Sbjct: 514 WPVFQAPDKTEPHQWMDPVDEVSTDHQDKQLADALAGHICDLIETETLTQLDATGAAFQR 573 Query: 380 MSLDENKKKSALIT-ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 L+ + L R + G+ I + + ++ L + SLL + Sbjct: 574 KI--TAGDFLILVQGRQKLLFREIHRACKEAGLPIAGADRLKVAAELAVRDIRSLLAFLA 631 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 D +++A +K PL + E + R +N + L + Sbjct: 632 LPEDNLSLAEALKSPLFGWSEQELFDLAQGRDS-PFLWRSLQNREEEFPNTVQRLTELRD 690 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + + + LL + + + + Sbjct: 691 LADFKRPFELIEHILTTYGGRSALLGQLGPEAAEGIDALVSQSLAYER------------ 738 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + +W + + + + + + + + ++ ++ Sbjct: 739 ------SNIPNLTGFLVWLDADDLEIKRQMDSVGDKIRVMTVHGAKGLEAPIVILPDTAP 792 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + + + + +QS L K + Sbjct: 793 RKAPKLPEVV---------------------PHNTIAVWSPNKDLIPAALQSSLKDKQRQ 831 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR-WLQRLLVLGGTDFFDNLKKRGQC 737 + + + + + +Q + G + + G Sbjct: 832 QEEERDRLLYVAMTRAESWLIVMGSGDIKEGKECWHNAIQDAISALGAAPLNTVAGLGLR 891 Query: 738 Y-LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI 796 Y + + P ++ P + ++L Sbjct: 892 YEPMQWSAGPQSDPVQPQVMKQSVPSWAIPYTK--PAQAPAAPRSPSDLGGDKVL---PG 946 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW 856 + + GT H ++ L ++ I E + Sbjct: 947 GAPQDAENAKRLGTAVHRLLEVLPNAPQDQWGH--------IAQRLVEADIQAAAFQE-- 996 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDI 915 + + L+ E + + + + G + G DR+ + + V Sbjct: 997 -------ARAVLQKPELAYIFAPESLAEVDISAHLPELNGDPIQGSIDRLLISPT-RVLA 1048 Query: 916 TDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 D+K+ + + Q+ AAAL Sbjct: 1049 VDFKSNQIVPSEVAQVPSGLLRQMGAYAAALSQ 1081 >gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 747 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 78/752 (10%), Positives = 185/752 (24%), Gaps = 115/752 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E++ E S + + + + Sbjct: 53 RIMAVTFTNKAAREMKERL-EKLAPGSVKDITMGTFHAICAGILRKEGQAI--------G 103 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 I R + L +++ + + + AI AK+ ++T Sbjct: 104 IAREFVIFDADDQ-EKLLKRSAEEIGVDPKKFPLKTISGAISKAKS------GMQT---- 152 Query: 166 WEDLHALKNEKYGMWWLLAADFL-KIASKYWTERLVELNASSPVGYQIALM-----RAEA 219 E + + + + + + L NA + + R E Sbjct: 153 --------PEMFREKAHSYLEEIVGRMYEQYEKMLRANNALDFDDLLLKTVFLFQRRPEI 204 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + L+ +A H V+ D W ++ Sbjct: 205 LKRYQERYVHIMVDEFQDTNLVQYELVKLLAGHYRNIAVV--GDPDQSIYSWRAADLRNV 262 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + + + SK Sbjct: 263 FNFEKDFPDRS--------------------------VHYLEQNYRSTSKILEAASGIIA 296 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIALRMSLDENKKKSALITADR 396 N + K+ + ++EA NE+EEA + A L S A++ Sbjct: 297 HNQKRKDIKLWTENGSGEPLCILEAYNEQEEAQMVVREAEKLSASGQYKLSDMAVLYRTN 356 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R ++ R+G+ + AG L + I D +++ ++ P Sbjct: 357 AQSRVLEEYFIRYGVPYKLVAGTRFYERREVKDLIAYFRLIHNPADSVSLMRIINVP--- 413 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 L ++ + + + Q + S E Sbjct: 414 -----------ARGLGDKSI-------------ADLQNWARGQGLSLFEALAASAGEGEK 449 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L+ + + ++ + + T + Sbjct: 450 PPLSARAIGAFASFYRMVESFIQAAAEKSLTELFDEILERTG-----YRAFLEAQPDGQE 504 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E L ++ + + + + + E + ++ ++ Sbjct: 505 RMENIAELHTVAEQFAALPPGEALSP-----FLESVSLVSDIDNLDETEGGVTLITLHQA 559 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L F + + GL E V P + + + L + + A Sbjct: 560 KGLEFPVVFIVGLEERVLPHFRSLDDPAQMEEERRLCYVGVTR--ARERLYLLRAFR--- 614 Query: 697 LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 R+L ++ SR+L+ + + + T + P R Sbjct: 615 ----RNLMGGSMLNDPSRFLEAIPN----ELTTGTLPKAPPVHARTGASSPRSAPPTIGR 666 Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 S+ + P + Sbjct: 667 VGTPSTGRPPVSAGGPSQTRVPAGKPAVAPYK 698 >gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R] gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R] Length = 763 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 90/745 (12%), Positives = 210/745 (28%), Gaps = 98/745 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + RY ++P + T +A E+R ++ G + + + + Sbjct: 43 TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVSQLVGPVAERM-WVATFH 98 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 V + + R L + L Sbjct: 99 SVC------------------------VRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMI 134 Query: 143 ANAIWL------AKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYW 195 A + L A+ L I ++ E E L + ++A F + Sbjct: 135 AKDLELDIKKFSARTLLGAISNLKNELVTPQEALADAERTHNPYETVVARAF-----SEY 189 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVA 250 RL NA +R EH + ++I + A L+ST+ Sbjct: 190 QSRLRRANAVDFDDLIGETVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLV 249 Query: 251 NHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 P+ + + D + T ++ + + L+ Sbjct: 250 GKPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFS---------NARTILLEQNYR 300 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + +N + ++ L + + ADNE Sbjct: 301 STQTILSAANAVISQNENRRPKNLWTALGEG-----------------EQIIGYVADNEH 343 Query: 369 EEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 +EA IA + +D N A++ N +R ++ R G+ + G Sbjct: 344 DEARFIASEIDNLVDHGMNYSDIAIMYRTNNSSRALEDVFMRTGVPYKVVGGTKFYERKE 403 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + L + +D + + ++ P G + + ++ Sbjct: 404 IRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISF---------- 453 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 ++L+ + E + + ++ +T L + Sbjct: 454 -GQALLDAGLGKIDLLGARGKNAVIKFNELFDALRTELPTMVNEVTGLPDIGQVISRILD 512 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + LD +L ++ E + + ++ + G + ++ Sbjct: 513 ITGYKAELEASNDPQDGARLDNLNELVSVAREFSSDAANRMVNE-VPEGEAQPGSLQAFL 571 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + ++ + D + + + + ++ ++ L F + L G +G +P + Sbjct: 572 ERVSLVADADQI--PDSDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDAKEL 629 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 + L + + M RS N + SR+LQ + Sbjct: 630 AEERRLAYVGITRARKRLYMTRAML---------RSSWGNPVTNPPSRFLQEVPAELIDW 680 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQ 751 + + TR + T+ Sbjct: 681 RREEPQMSSAWAPRPTRSIPTKTRT 705 >gi|85711557|ref|ZP_01042615.1| Exonuclease V gamma subunit [Idiomarina baltica OS145] gi|85694709|gb|EAQ32649.1| Exonuclease V gamma subunit [Idiomarina baltica OS145] Length = 1150 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 96/909 (10%), Positives = 227/909 (24%), Gaps = 84/909 (9%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 L + T + + L T+ V + Q L+ + G S + + Sbjct: 16 LEDLTDIAVNFIERFPLAPLEQETVLVQSNGIAQWLKINLAQHAGIAS-----MIDVTLP 70 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 ++ A + + P S + RL+ + + L + ++ ++ + Sbjct: 71 ARFQWQAYRAVLGDDIPRTSPFDKARLSWRLLRLLPDVLEQDARFTPLKNYIANDLDNRK 130 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 L++ LAD+ D W D + L A+ + W ++ A Sbjct: 131 LYQLSERLADLFDQYAIYRADWLD-NWLNERDVLDNDEPVANEHAWQPELWRRVANDIGA 189 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHPNGAIV 258 + L + + + P I++ G + ++ + + + Sbjct: 190 EHLWNNRATLHQQFIKSARALNQRPATIPPRIMVFGISSLPQQMLEVLDALKHLSQIVLC 249 Query: 259 LPGLDCHIPTAIWNTITE-----------KSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + I + + Q + L + R Sbjct: 250 VHNPSKFYWADIVDGKEQLKQVVKAKSRLAHKPGMPLEWNDEELHQLAHPLLASWGKQGR 309 Query: 308 EDVK--RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN------------KIPNIQ 353 + ++ L + S + ++ ++ + ++ + Sbjct: 310 DYIRLLDLYDESIQKQAELGHMTLELFESHATEHVLGQLQDDILNLRPLHETQQHWSPLS 369 Query: 354 KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL--- 406 V + + E + L + E+ + ++ D + + Sbjct: 370 VQDQSVQFHICHSPQREVEVLHDRLLAAFAEDPTLKPRDVMVMLPDVDTYAPYIDAVFGR 429 Query: 407 --------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL---- 454 I I+ L LL++ + TL+ P Sbjct: 430 YARDGNGQDTRAIPYTIADQTSRHRAPLLIALELLLSSDQLRFTQTDLLTLLGTPAIQRQ 489 Query: 455 AKFGFPEKYLSRAK------NALELVALRGNKNSYDIMDLKSLV-----LDRIATQKNNT 503 + R R D + S + + Sbjct: 490 FNIDDDDVEQLRTWMTNAGGRWGLSAEHRKLFFMPDDDETNSWWFAIKRMMAGYSIGYAE 549 Query: 504 HVPHWQSRLSEEDKELA-VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 WQ + D LV I L + + SDW + + Sbjct: 550 VESDWQDIAAYTDIGGLGADLVGRFGYFIEQLERWWDDSREARTY---SDWLPIAEWLID 606 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 E L + L + + E + + N + + +D + + + Sbjct: 607 TFFESEEASDALL-KNQILDQLYQVAEHVDEADNKTELNIALFRESWLSRVDEQNLNQRF 665 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + + R + F + + G+NE +P+NT++ F + ++ Sbjct: 666 LAGA-VNFATLMPMRAIPFKFVAILGMNESDYPRNTSQIDFDLMASRYRPGDRSRRDDDR 724 Query: 683 QAAHDFEMANGTRHLIYTRSL---RENNIPTIASRWLQRLLVLGGT----DFFDNLKKRG 735 E R + Y + +N S + +L D ++ Sbjct: 725 Y--LFLEALLSARDVFYVSWVGFSARDNSARTPSVLVAQLREHLQQGWHSDLSEHTLAHK 782 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793 + D + + + + S + + D V I + Sbjct: 783 LQPFNRAYFDDSSRVFSYASEWAQAHDSVSHQSSSSSVALTDDLADERTVNLNDIKRFVQ 842 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 + F T I + ++ + KE P Sbjct: 843 EPARLFFNSRLETYFSVDADETIDREAFQLDALTEWKLLQRVVDKTREAVRKELEPEQQM 902 Query: 854 IIWRHLFHK 862 + Sbjct: 903 HEELARIRR 911 >gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] Length = 1159 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 96/883 (10%), Positives = 213/883 (24%), Gaps = 80/883 (9%) Query: 93 LLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP-ESPLSLPISPANAIWLAKN 151 ++R L + L D + + + A Sbjct: 283 AASPEERAVSFDALERALFTKESTPKYAKNLEKQDPDYVSHAEDVGEALEAVRDLVRAFA 342 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 LAD++D T ++ A + K ++ D ++ A+ TER + + Sbjct: 343 LADLLDPALTVGCRFAR--AWQEAKDREGFIDFDDQIRAAAALLTERAPADWIRFKLDRR 400 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTG-------SIPATARLMSTVANHPNGAIVLPGLDC 264 + + + I++ G TG AR + V ++ G Sbjct: 401 FDHVLVDEAQDTNAAQWRIVLDGLTGDFFTGAGKETDGARTLFVVGDYKQAIFRFQGTSP 460 Query: 265 HIPTAIWN-----TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 ++ + S L + +G Sbjct: 461 ENFDRARRRVENELLSLARMADDPTLELLDLGLGRSFRSSQTILSFVDRAIAGIGPARLG 520 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + LP + + + E + A +RE A IA +R Sbjct: 521 LAAAPELHEGQILPGLVTLWQPVGLGETAELGAEDDTGGDEGWLAGTDRELAARIARQVR 580 Query: 380 MSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 LDE L+ +LA + L G+ + + L L Sbjct: 581 QWLDEGFSLSKGRHRRATPGDVMILVRKRGDLAGLIVARLHAEGVPVAGVDRLRLGAPLA 640 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + L + D + +A L+ PL + + + + Sbjct: 641 VKDMIAALTFCVQPGDDLNLAGLLVSPLIGWSQQDLLAHGYRGKGVPLWDHLRATENAQT 700 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 L + ++ + + + + LV + + N Sbjct: 701 HGALTRLRELLSRADFAPPAALLTWILVGPWQGRKALVARLGAEANDPIDELLNAAMAYA 760 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + N + + + + + Sbjct: 761 TAHVPSLAGFLHWFAAGDGDVKREAGGN-----------------ADLVRVMTVHGSKGL 803 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 ++ P + + + ++ E P + Sbjct: 804 QAPIVILADAADDPGKSRPAPVVLMDDG----------------ERAVPLPPLRKDEKPL 847 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIASRWLQRLLVLGG 724 ++S + E+ + ++ + W L L Sbjct: 848 PVRSAEEIARREEREEHWRLLYVAMTRAEEALFVTGSLGPRDKGEVPEESWYAELARLLP 907 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 TD + + + L + P P L + E + L + Sbjct: 908 TDGGLEDPIWTRRWEEGA--LAPLPPKDPATGPAPSVVLPDELVRAIAPEPRPLRPLAPS 965 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + RGTL H ++ L ++++ Sbjct: 966 ALGEDEAPAPPTRPGPGARNAARRGTLLHRLLERLPDLAPEARAASAMAWVRRMATD--- 1022 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + + + + L + E +P + + G DR Sbjct: 1023 -------LPENEQAGLVDAALAVLTNPEWQDVFGPGSLAEVPIAALVGPR--LINGTIDR 1073 Query: 905 IDLLKSGFVDITDYKTGDNPK--KETAQKLIDPQLSLEAAALK 945 + + V I D+KT P + Q++ AA++ Sbjct: 1074 LLITA-QAVRIVDFKTDRRPPEDLDAIPTAYLRQMAAYVAAMR 1115 >gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] Length = 1107 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 92/915 (10%), Positives = 205/915 (22%), Gaps = 102/915 (11%) Query: 60 LRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119 L+ F + +L D E+ LL S + + S L W Sbjct: 232 LQERFAAHMQ-------QLITLMDYREQNLKRGLLFSGDCSDLASWRGVAALLLTGKGEW 284 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 R + ++D +P A + L L + D E + L + Sbjct: 285 RKTVT--VRDGFPAGKGEPAELKAQMLALLSTLREEDDGALLGELRQVVLLP-DVDDEPA 341 Query: 180 WW---LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKG 228 W + L + +A + A + + Sbjct: 342 HWDVLVAVTRLLPRLGAELLLVFQQKGEVDHAQIAMAALDALGTDREPTDLALRLDHSIE 401 Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGA---------IVLPGLDCHIPTAIWNTITEKST 279 +++ + L+ + + +L D + Sbjct: 402 HLLVDEFQDTSSVQFELIRRLTRGWHEHNEANPQGPRTLLLVGDAMQSIYGFREANVGLF 461 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + L+ L + + L +N + R Sbjct: 462 IRARNEGVG------DLSLTPLDLQVNFRSQQGLVEWTNAHFQRGFPQVDDAQLGAVQFR 515 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM-SLDENKKKSALITADRNL 398 F+ + E ++ L ++ + A++ R Sbjct: 516 EAIAARAPDEAPEFALFTGD-----GGQAAEIEALCDKLAEGVARDDVESIAVLGRSRTQ 570 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R + L I++ L+ L +L + D A +L++ P Sbjct: 571 LRPILAALRARDIDVAARDLDTLAQRPLIRDLLTLTTVLCDRFDRFAWLSLLRTP--AIA 628 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 L R + A ++ L+++ + W D+ Sbjct: 629 LDNADLLRMASHCPTAADFRDREITRDTALQAVSRPGQQRLGQLQKLLAWADHYK--DRL 686 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + V+ + + ++ + + + Sbjct: 687 ALRVWVEECWLFLGGAASLASDA-DLRDTERFLQCLEELEVDQAPLNGRSLATAVEALYA 745 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 G + + ++ + + + G + L Sbjct: 746 SPGDERCKVEVMTLHKAKGLEFDWVFIPALAKS-------------------TGGQDKEL 786 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L +D +L G + L ++ + A R Sbjct: 787 LLWDEFVLPGA---------PPSFLLDIRDTAEGGANPR-----LYDYLKAQAKQKRDYE 832 Query: 699 YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 R WL L + G +++ H + Sbjct: 833 AARLFYVGCTRAADYLWLGAALSFSEAKDSYSPPGSGSLLSVIWPSIEHQASVTHVSLDE 892 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 +L P + ++ GT H I Sbjct: 893 DAVDAPTLGYR-------RLRELPDIAVVAANSPASPLE-LSENYLARALGTAVHRCIEA 944 Query: 819 LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS-- 876 LI + + ++ ++ + + L + Sbjct: 945 LI--YKPELPECCDEKLRGLLRVALIEAGADRQALPELVLEGASMLDRLLGDSWARWALS 1002 Query: 877 -SIEKIFVNIPAKMAIESIGIHLTGFADRIDLL----KSGFVDITDYKTGDNPKKETAQK 931 + +P +A + L +D ++G + DYKT E ++ Sbjct: 1003 AQRRERAAELPLTIATGTGAQQLI-----LDYSFLDEEAGERWVIDYKTAIPGPGEDVRQ 1057 Query: 932 LIDPQLSLEAAALKA 946 + QL L Sbjct: 1058 FVMAQLESYGEQLAR 1072 >gi|313115010|ref|ZP_07800502.1| hypothetical protein HMPREF9436_02367 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622664|gb|EFQ06127.1| hypothetical protein HMPREF9436_02367 [Faecalibacterium cf. prausnitzii KLE1255] Length = 693 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 64/611 (10%), Positives = 142/611 (23%), Gaps = 71/611 (11%) Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI 212 A ID +++ L L + L + + + L P Sbjct: 120 AQTIDELKSAGLSGAQLSELAPDCGPE--SGKLSELALIFQGYETLLAGTG-MDPADRLE 176 Query: 213 ALMRAEAEHLMK------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHI 266 L + + + I RLM + V D Sbjct: 177 LAADRLEAALARGELPDFLREREVFIDEFDTFNAPKKRLMGAMLAALPTVTVALCDD--- 233 Query: 267 PTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMV 326 + + L +L + L Sbjct: 234 --------GAPMVPGDMGLFSGAKQVAAQLRQLARKNGTDAAVPELLRRDLRHKDA---- 281 Query: 327 ISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-- 384 T++LE + +V L A + EEA A A+R + + Sbjct: 282 ---------PGLAAVTELLETGTCEVPPAAPEVRLFAAASREEEARCTAAAIRRLMRQGV 332 Query: 385 -NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 K + + + ++ E I + + ++ + +LL + + Sbjct: 333 RCGKMAVVCRNIPDYRAAIRYEFRMADIPLYCDEPTTPEFSAPATAVRALLALLRGADMT 392 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS----YDIMDLKSLVLDRIATQ 499 + L K L P+ + L + T Sbjct: 393 ENLTILAKTGLCALTEPQVCALENYAYTWSPNAAAWRTKFEKSPKGFGENELSDEDAKTL 452 Query: 500 KNNTHVPHWQSRLSEEDK-----ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 ++ +E + A + + C+ L + + Sbjct: 453 EDAETARQLLVTAVDELRSKVRGGSAEQISRELYFCLKKLGAEEQQAALVEAVRTARGIP 512 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + + L +++ E+ D+ + L+ Sbjct: 513 AAEEAARE------------------WNVVMQLLNEMAHLLGGQGVTFAEYEDLFSLLLR 554 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ----- 669 + + + + + RL D + + GL EG +P ++ L+ + Sbjct: 555 SSDLGHIPQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPCAPSETGLLTHADRDVLMA 614 Query: 670 SDLNLKT-AEKYIGQAAHDFEMANGTRH--LIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 ++L E + + A L + + A + L + Sbjct: 615 KQIDLPDCFENRVVREQVCVYKALTAPAKGLWLSWPKGQGKTLCAALEPIVEALHPAAPE 674 Query: 727 FFDNLKKRGQC 737 Sbjct: 675 LELPDLAATPA 685 >gi|150014905|ref|YP_001307159.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB 8052] gi|251764545|sp|A6LPC3|ADDB_CLOB8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|149901370|gb|ABR32203.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB 8052] Length = 1159 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 85/254 (33%), Gaps = 35/254 (13%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK--- 826 +S S++++ P++ + + LK + D G+ H ++ K Sbjct: 776 FSVSKLEKYAECPFSYFVQYGLKAKNRK--VYEFTPPDLGSFVHEMLDSFTNKVREDGVL 833 Query: 827 NTPEINHLMKQIIDSHFEKENLPPH--------IDIIWRHLFHKISHSFLEHEEKI--QS 876 + N K+II + +K+ + F ++ + + Sbjct: 834 WSDLSNEKCKEIISNLIDKKLMDESNSILNSTKKFKYLAQRFKRVISKSVSVIASQIGKG 893 Query: 877 SIEKIFVNIPAK-------MAIESIG---IHLTGFADRIDLLK-SGF--VDITDYKTGDN 923 E + ++ ++L G DRID L G + I DYKTG Sbjct: 894 EFEVFKTEFDFGSYSSGEAITLDLNDNEKVYLQGRIDRIDKLDLDGETYIRIIDYKTGAK 953 Query: 924 P-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKY 981 + QL + A +K + K + Y ++ D I KK+ Sbjct: 954 KFDLNEIYYGLQVQLLVYLDALIKNSKYILDKQVKPGAILYFKID-----DPIIKSKKEM 1008 Query: 982 SADELSEKSLKNLI 995 + +E+ ++ L L Sbjct: 1009 TDEEVEKEVLSALK 1022 >gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 1201 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 87/817 (10%), Positives = 201/817 (24%), Gaps = 74/817 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 67 GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 126 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A K+ YP S ++ + L Sbjct: 127 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 185 Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202 L++ + T E E L L K A L ++ + Sbjct: 186 ELSEHLVRPGTLEAYDTELLRELAAAKLSNADLRKIPEAAEARRSLLGLTERYRTAKRSR 245 Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252 + AL R E +++ +++ + A L+S + Sbjct: 246 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGSGGTGS 305 Query: 253 ----------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 G V D W + + + + ++ + L Sbjct: 306 GGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRYSL--- 362 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 S ++ + + + + + + V Sbjct: 363 --------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDGMVRCA 408 Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 EE +A +L + + A++ ++ L I +++ Sbjct: 409 LLSTHTEEIDWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEVVGLAG 468 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L + L ++ + ++ L+ P + G + L + L + Sbjct: 469 LLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRAD 528 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 ++ L V + + ++ + + + L + Sbjct: 529 DADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRD 588 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + + ++ T V L + E + ++ Sbjct: 589 LRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASL 648 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 A + +T+ +L +S+ L +D + + GL G +P ++ Sbjct: 649 LAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSR 708 Query: 661 NPF------LSRVMQSDLNLKTAEK----------YIGQAAHDFEMANGTRHLIYTRSLR 704 + + L ++ D A H ++ +TR Sbjct: 709 DAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRLGYVTFTRPRS 768 Query: 705 ENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 S+ R +++ W + + P Sbjct: 769 LLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADL 828 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + + + + A R ++ D Sbjct: 829 AWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEP 865 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 81/770 (10%), Positives = 183/770 (23%), Gaps = 52/770 (6%) Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 IP ++ + + P A ++ + ++ T A+ Sbjct: 459 IPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRAR 518 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQKC 355 LL + +D ++ + G S + + D ++ +P + Sbjct: 519 LLVHRAGRADDADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVR 578 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 F+ +A D R A + L L + L + + LA R + L F Sbjct: 579 FARLARELRDLRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAAR 638 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A +L + + A ++ A+ K L A+ + Sbjct: 639 FASFDGEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLV 698 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + + + + + + + Sbjct: 699 TGQFPSGQSRDAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRL 758 Query: 536 TYKTNKNSTCGNLSISDW-------TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 Y T L W T+ L+ + + + Sbjct: 759 GYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEEN 818 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + E + + D + R + + + D + Sbjct: 819 PALAERDADLAWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHE 878 Query: 649 LNEGVWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 + P ++ + + H Sbjct: 879 PWDEEPPLDEPPADEDWDWDALPTERPAEPVPDMAPEPVRERAPAPEAAPHTEPAPDPAS 938 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDN------LKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 P I + + + + W R LD + +R + Sbjct: 939 EPTPHIPAARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDLDSLAGE--LRRARA 996 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 P S +++ +L DP A A+ + + P RGT FH + Sbjct: 997 TVREVVIPAALSATQLLRLAEDPDAF-AQELARPMPRPPQ----PAARRGTRFHAWVESR 1051 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ D+ E + E + Sbjct: 1052 YEELPLPMLGPDELPGGDESDAEIADERDLAELKE--------------AFERTAYARRT 1097 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 V P ++ + + G D + +I D+KT + + QL++ Sbjct: 1098 PYRVETPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTTRHRTADP------LQLAV 1148 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 A +D ++ ++ + + L ++ Sbjct: 1149 YRLAWAELHDLPLDAVT---ATFLYVRTGETVHPQGLPGRADLERILLDE 1195 >gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] Length = 1205 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 84/703 (11%), Positives = 204/703 (29%), Gaps = 94/703 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTIL---------PIIKSLGDVV-----EEKFTA 91 + T++A EL + + P + L ++ + + Sbjct: 70 QILGLTFTRKAAAELGERIRQRLQTLAGSAFMDQLSADDPRREVLKNIAPAVATYDSYAG 129 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 D++ Y L P RL+ A ++ R+ + + L ++ +S A+ L+ Sbjct: 130 DIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSV--IADVCALSDE 187 Query: 152 LADIIDIIETEEKKWEDLHALKNEK----------------YGMWWLLAADFLKIASKYW 195 + + + I E++ L E + + LK+ K + Sbjct: 188 MDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIELLKLVQK-F 246 Query: 196 TERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVA 250 E L E + + +H + +++ + A ++ ++ Sbjct: 247 RETLQECDLLTFGQQMSKAATLVRDHEVVGQDQRRRFRVVMLDEYQDTGHAQRVMLRSLF 306 Query: 251 NHPNGAI----VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + D + T + ++ + +LL Sbjct: 307 GDGRAGEGSFSAMAVGDPMQSIYQFRGATASNLEKFRTDFPNAAGEPAEKLQLLTSWRNP 366 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 + VS RS + ++ P + A+ D Sbjct: 367 TMVLDMANRVSTWSMERSTEST-------------GRLVSELRPRPGATEGESAVAFFDE 413 Query: 367 EREEAISIAIALRMSLDENKK--------------KSALITADRNLARRVKLELTRFGIN 412 +E +A L+ ++++ +A++ A + +L G+ Sbjct: 414 REQELDWLADKLQSQWRDHQRKLETADDPAKVKPFSAAVLVTVNKDAVPIYEKLVERGVP 473 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 D++AG L + + ++L + D +A+ L+ P ++ L+ E Sbjct: 474 ADMTAGPGLLYIPEVADVFAMLRVLVDPTDDVALLRLLTGP--RWNIGAADLAVLTRRAE 531 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIA-TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 +A RG + + D + V E A ++ + Sbjct: 532 QIAKRGAGEAGAVDDAAMERQRQENIELLRTPGVRDELIEEVLEAIPNATEFSVGLIDAL 591 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----------------------VCLDEH 569 L + S G+ ++ + ++ V H Sbjct: 592 ADLTDAEQMGMSAEGSRRLAQLGRELGYLRRHSLGKNLPDLVADIEKMLGVRTEVLTRWH 651 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 R+ + + + TGS +E++ DG K +T+ Sbjct: 652 RRPEQAIGTSHLDKFAQIVRDVSRTGSATPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQ 711 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 IL +++ L +D + + + + + + +++ + Sbjct: 712 ILTVHKAKGLEWDIVAVPHASRERYGDYSQPRSESAWTIKARV 754 Score = 73.4 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 58/238 (24%), Gaps = 30/238 (12%) Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 L L+ + + + +E L D Sbjct: 951 RPAPGATADGAPTTLAEAWDLETNLLLEEFSAMDNAELVVPLNVRMTATEAVSLRKDNQE 1010 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 R + + RGT FHN + E K+ + ++ ++ Sbjct: 1011 FALRAR-RPIPLEPKPY----AKRGTAFHNWVEERYKQVSLLDEDQLPGASDATLED--- 1062 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + +FL E + + V + I G D Sbjct: 1063 -------------PYLETLKDAFLRSEWADR---QPESVEGAYSVTIGGHVFE--GRIDA 1104 Query: 905 IDLL---KSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 + + + D+KTG P QL++ A +++ A Sbjct: 1105 VFHDGTDPTAGWIVVDWKTGRKPTGADMDAA-AMQLAVYRLAWAKLLSAKLGVEVPAE 1161 >gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] Length = 894 Score = 99.6 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 93/723 (12%), Positives = 187/723 (25%), Gaps = 70/723 (9%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E+R I++ G +T + + + Sbjct: 125 TAVLTRRIAYLLRMRGVAP---GQILAITFTNKAAAEMRDRVIDLVGPTATRM-WVATFH 180 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 L + + + + L I KDL + P Sbjct: 181 SACVRILREQAHL-------LPGLNTNFTIYDADDS-KRLLGMIAKDLQINAQKFPPRL- 231 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 LA I ++TE + + + + RL Sbjct: 232 ---------LAAAISALKTELTDPDAASDEAAATRNPF----DRTIAEVYTEYQRRLRAA 278 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 NA +R H + ++I + A L+ST+ + A Sbjct: 279 NALDFDDLIGETVRVFTTHPEIAAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGIGSDAS 338 Query: 258 VL-PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 L D + T ++ +PQ L + + V Sbjct: 339 ELSVVGDSDQSIYAFRGATIRNIEEFE-----RDYPQARTILLEQNYRSTQNILSAANAV 393 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + +GR E K+ + + ADNE +EA IA Sbjct: 394 ISHNHGRR---------------------EKKLWTDHGAGAKITGYVADNEHDEARFIAT 432 Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + D A++ N +R ++ R GI + G L + L Sbjct: 433 EIDALFDTGVGYGDIAVMYRTNNSSRAIEEVFIRTGIPYKVVGGTRFYERKEIRDLIAYL 492 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + D +++ ++ P G ++ + +L Sbjct: 493 RVLDNPTDEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTR 552 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + + E L D I ++ ++ K + D Sbjct: 553 AKNAIAAFLELMDGLRADAAEATNAITGLPD-IGVVVSRILDATGYKAELEASTDPQDGA 611 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 +L E + E + + Sbjct: 612 RLDNLNELVSVAREFSSEAANLMAYAAMGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLV 671 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 ++ + + ++ + ++ ++ L F + L G +G +P A + L Sbjct: 672 ADSDQLPDDSTNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPHLRALGDPQELAEERRLAY 731 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + M R+ N + ASR+L+ + + Sbjct: 732 VGITRARETLYLTRAML---------RASWGNAVANPASRFLEDIPEKLMYWRREEPGAG 782 Query: 735 GQC 737 G Sbjct: 783 GWD 785 >gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] Length = 785 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 88/735 (11%), Positives = 196/735 (26%), Gaps = 89/735 (12%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E+R + G ++ + + + Sbjct: 31 TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 86 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A+L+ + D + Sbjct: 87 STCVRILREQ--------------------AQLVAGLNSNFTIYDSDDSKRLLAMISKDM 126 Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + L I ++ E A + A + RL Sbjct: 127 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 182 Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + NA +R EH + ++I + A L+ + Sbjct: 183 QANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 242 Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 A + D + T ++ +P + L + + Sbjct: 243 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 297 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +V ++ R + K+ + ADNE +EA I Sbjct: 298 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 336 Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 A + D+ + A++ N +R V+ R GI + G + + Sbjct: 337 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 396 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L + D +++ ++ P G + + V+L+ + L+ Sbjct: 397 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVS-LL 455 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 R + R S + + + I I ++ K + D Sbjct: 456 GARGRNAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQD 515 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611 +L L + + + S + G + +++ ++ Sbjct: 516 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 573 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + D + + + + ++ ++ L F + L G +G +P A Sbjct: 574 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 619 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726 L ++ + + R L TR++ N + ASR+L + Sbjct: 620 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 677 Query: 727 FFDNLKKRGQCYLDW 741 + + + Sbjct: 678 RREEPESSFDAWGQP 692 >gi|152979443|ref|YP_001345072.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus succinogenes 130Z] gi|150841166|gb|ABR75137.1| exodeoxyribonuclease V, gamma subunit [Actinobacillus succinogenes 130Z] Length = 1113 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 110/967 (11%), Positives = 249/967 (25%), Gaps = 119/967 (12%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 G L+ + +P S TI V + Q L+ + E G + + + Sbjct: 17 AGILISLLQQRSTDP--FQSETILVQSPGMAQWLQLKIAEADGIAANL--RFPMPASFIW 72 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 ++ AD L + P L L+ I + L + Sbjct: 73 QQ-YADNLPDVSEQSPFGKEAMTWHLMALLAIL------PLPRLNEYWRDHALGNQEKRY 125 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM------------WWLLAADFLKIASKY 194 LA+ +AD+ D W D +++Y ++ + Sbjct: 126 QLARQIADLFDQYLVYRPDWIDAWEKGDDRYIENQLRYALADNPVLLAQIKQDIRWQGQL 185 Query: 195 WTERLV---ELNASSPVGYQ----IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 W E + SP ++ + + A K I + G + A + Sbjct: 186 WRELVAAVCRHTKDSPARHRVNLHLTYLNTLATGRPKNLPPRIFVFGISALPKAYLETLQ 245 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH---------------- 291 ++ H + H + + + ++ + S Sbjct: 246 AISRHSQVHLFFNNPSKHYWGDLADPRFIRELSLKTYREHGSDREANWLSETEKVRLKNG 305 Query: 292 ----------PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 Q L + + R+ L +++ + + + L + Sbjct: 306 EFERSADDELLQIGHPLLATWGKLGRDFFYLLSDLNAREFTAYTPLEGADLLTQVKNRIL 365 Query: 342 TDILENKIP-NIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + + P K V L + E + L + K ++ AD Sbjct: 366 NLVPDKQQPLQPPKADRSVVLHACHSPMREVEVLHDYLLRQFQADETLTPKDIVVMVADI 425 Query: 397 NLARRVKLEL-----------------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + + I IS G + + SLL+ Sbjct: 426 DRYTPYIQAVFGQYQRYTEDRIGKKRPDERYIPFSISDGKLSENDVLLATYLSLLDLKNS 485 Query: 440 LNDFMAIATLVKHPLAKFGF-----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + P + F + +E+ + + + Sbjct: 486 QFSAEEVLAFLDVPAIREKFEIALSDLPQIRHWVARVEIRFGLDKNCDSAVKNYNAWQAG 545 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + + L + L + SI W Sbjct: 546 LERLLLGYAMRESQGIWQDSLGFDDSDGLKGQVVGNLAAFLDRLAQWHTFLQQSHSIEKW 605 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + L + + + + + + + S+ + +A +++T + Sbjct: 606 QQNLTALLTDFFVADEQTVDI--QQYIRDAVRSVTELLRSMDFQEDISAEVMAEVMTEKL 663 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + + L R + F + L G+NE +P+ N F +M+ Sbjct: 664 ND-NPNSLKFLVGKVSFCTLLPMRSIPFRVVCLLGMNENDYPRRRTPNSF--DLMRYHRR 720 Query: 674 LKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730 + E + L + R +N P S + +L + DN Sbjct: 721 KGDRSRRDDDRYLFLEALLAAQEQLYISYVGRSITDNQPRQPSVVVSQLQDYINDNLADN 780 Query: 731 LKK----------------RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSE 774 + G L + P + + PL + + Sbjct: 781 ALRLTEKVHPMTIFSPQNFYGNDRTFAKEWLPSSPAMPSGENKQAVLPLTEKLTRIELDQ 840 Query: 775 IKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 + + + P + L + F PD + TL + + + + E+ Sbjct: 841 LVKFVRHPVKYFFENQLGVYFQNDDDLIPDTENF-TLDGLDLYRIKDDFLTYSDEELCRY 899 Query: 835 MKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 +++ + + N + R ++ + + ++ Sbjct: 900 FERLSVKGILPRGNFGKVYEAKVRSEMETFREKVRDYLLQ---------TPQTQAIELDI 950 Query: 894 IGIHLTG 900 G+ +TG Sbjct: 951 DGVKITG 957 >gi|315604158|ref|ZP_07879224.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310] gi|315313864|gb|EFU61915.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310] Length = 294 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 65/249 (26%), Gaps = 22/249 (8%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P P S S K+ P + GTL H ++ Sbjct: 16 APSPAERTWDPALSASRAKEYERCPLQYRLHVVDGYREPESR-----AKALGTLVHAVLE 70 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI-------DIIWRHLFHKISHSFLEH 870 +L T + ++N W + + Sbjct: 71 DLFSLPPRSRTRDAARAQLAPAFEALTQKNPEVAALFGDEADREAWLEDARSVVDGYFAI 130 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E+ I + G+ L GF DR+D G + + DYKTG P Sbjct: 131 EQPQW--IAPAAREARVTATTKG-GVRLLGFIDRVDRAPDGRLRVVDYKTGKAPSPRYVD 187 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + + Q+ A L + + + L+ I + + ++ Sbjct: 188 EAL-FQMRFYALLLAR------TQVLPSRMQLVYLRAGQVITFDPDPTDVADFERRIDQL 240 Query: 991 LKNLIEIVT 999 + E + Sbjct: 241 WGRIEEDLA 249 >gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 88/787 (11%), Positives = 196/787 (24%), Gaps = 75/787 (9%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPAT 242 A+ L + ++ + E G+ Sbjct: 387 RTAEMLGRVPASFVHYKLDRGIDHVLV--DEAQDTSPEQWRVVRGLVSDFFSGEGAREGV 444 Query: 243 ARLMSTVANHPNGAIVLPGLDC----HIPTAIWNTITEKSTNITSSNTTYSTHP------ 292 R + V + G D + A ++ S ++ + P Sbjct: 445 KRTLFVVGDEKQSIFSFQGADPRAFGDMRLAFQREAGQEDFRQVSLPHSFRSAPGVLEAV 504 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 + + ++V + + + +P + + ++I Sbjct: 505 DAIFQRAEASAGLTIDNVAPPHAAIRADAPSLVELWPTVVPAAKVKVDDWRRPLDEIAGD 564 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS-ALITADRNLARRVKLELTRFGI 411 I + A +AI R + L+ L V L G Sbjct: 565 DPVSRLAERIASFVRTGIAQRLAIPSRGGRPMRAQDVLVLVRRRGRLFEAVIRALKEAGG 624 Query: 412 NIDISAGIPL--STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 +D++ L + + + L +L +A+ +D +A+A+++K PL + + Sbjct: 625 GVDVAGADRLVVAEHIAALDLMALGDALLSPDDDLALASVLKSPLFGLTDDDLLRLCPRR 684 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 R + L R + + +R+ D +L + Sbjct: 685 E-----GRLLDVVTTGDGSIAERLTRWRGEARELRPFDFYARVLGRDGGRRAMLARLGPE 739 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 L + + + G Sbjct: 740 AADVLDEFMALARTYESLEPA------------------TLPGFLAFLRRGGAETKRDME 781 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + + ++ ++ PK S L L + Sbjct: 782 SGRDEVRVMTVHGAKGLEAPIVILADTVDLPKARTSGGL---------------LHVPTA 826 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY-----TRSLR 704 + P + P + + TA + + + TR+ Sbjct: 827 DGATVPVLAPRKPEDPPSLAAARAAVTARELEEYRRLLYVALTRAEDALIVCGAETRAAA 886 Query: 705 ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 ++ + L+ + + + G + R + P Sbjct: 887 KDKTHARPAGCWYELVHAALIEEAEPVPATGWE-GEVLRWRKSGRTLAPAEGTLSAPVAP 945 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 PR ++ ++ A+ R F P D RG L H ++ L Sbjct: 946 PPPRPARLEDLPPVLISTEAIRPSRSAAASFRPPADGSLDPRVRGDLVHRLLAGLGALPE 1005 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 ++ L+ + + R L H Sbjct: 1006 DQREAAGERLLDHVAEQVAAHH----------RAEVMAEVMGVLTHAPLAGLFAPHSLAE 1055 Query: 885 IPAKMAI---ESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSL 939 +P + + + + G DR+ + + + D+KT P + + QL+L Sbjct: 1056 VPVVGRLTAADGRLVTVNGRLDRLAVTGD-QLILADFKTDRVPPQSLDRIGEGYVGQLAL 1114 Query: 940 EAAALKA 946 AA L Sbjct: 1115 YAAVLAR 1121 >gi|258653148|ref|YP_003202304.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM 44233] gi|258556373|gb|ACV79315.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM 44233] Length = 323 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 84/283 (29%), Gaps = 27/283 (9%) Query: 745 LDYTTKQPHYKRPKP--FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + + + +P S S + P R + +L P Sbjct: 7 MAQPVGTDPAEASEAFGEAARPRRPLALSPSRASDFKSCPLLYRLRAVDRLPEPPSP--- 63 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKE------NLPPHIDIIW 856 RGTL H ++ E+ + + TP ++ LP W Sbjct: 64 --AAVRGTLVHTVLEEMFGRPGPERTPRRTAEAVGPAWERMAEQCPELVGMLPDEAMAGW 121 Query: 857 RHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT 916 + S+ E+ + E ++ G+ L GF DR+DL +G + I Sbjct: 122 LDSARDLVRSYFRLEDPRR--FEPQACEYAVEID-TVDGVPLRGFIDRLDLAPTGELRIV 178 Query: 917 DYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 DYKTG +P + + + QL A + + A L I L + + Sbjct: 179 DYKTGRSPGPDFEGRALY-QLKFYALMIYR-----LRGVVPAQLKLIYLADGLSLQYAPS 232 Query: 977 DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 + + + + + F + + Sbjct: 233 ESELIGFSHAVGALWRAVTAAL-----ESGNFPARRGPMCRWC 270 >gi|323342308|ref|ZP_08082540.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463420|gb|EFY08614.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 810 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 83/764 (10%), Positives = 189/764 (24%), Gaps = 105/764 (13%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMST 248 +I + + L+ A + + IA + Sbjct: 9 RIFHEDLKQILLSKQDYYLGVAVRDF--KLAFFESDTHRRSVEIAVFNQLQKCNCPRLQE 66 Query: 249 VANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 V +P VL L + + + T LA + +L+ Sbjct: 67 VLKYPKTMHVLIDLLQELYLYGLSL------DSCPRETPLQEEIFQCLALIDPYLE---- 116 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + ++ I + + A N R Sbjct: 117 --------KPVVQEDVEYEAVAYGLSHAEYAFLKRHNIPFIEPQSQKPDSIFFKVALNPR 168 Query: 369 EEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL-STTLHS 427 E ++ + + K + + A++++ + + G PL Sbjct: 169 SELEAVVQDI---IRNGYKSATIAVANKSMIEPLIESIFERY-------GYPLKLQDRRF 218 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 ++ S A+ I L+K + + + + D+ Sbjct: 219 ELMKSQYRALLDFAFDPNILQLIK-----AIESGAFGLKRREDIVTYLTHFEFELNDVFG 273 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + + + +ED +D ++ Sbjct: 274 -----AYDLCEETESYPDLFALQNRIQEDVVRLKEYLDEVMN------------------ 310 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 L + +++ + L +L + G+ + ++E ++A+ Sbjct: 311 LDFKETLIACYNVIKSHTHGDLTSLCSLLEKHLGEYQEETYLLMLEHLDSLQAH------ 364 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + S L I+ L+ D L + L+ +P ++ + Sbjct: 365 --------------QQNISPLRIVDYCSLPLIPQDHLYVVNLSAKNFPSIRSRTGIIDEA 410 Query: 668 MQSDLNLKTA--EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 + E+ + + +++ + S + Sbjct: 411 YLRCIEGYPRLDERTQFTLRMQNHIFDHNKNMTLSYSSATYEGKGQEVSYPVEQFARENN 470 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 + Y K LE S S + +NDPY Sbjct: 471 IDLKSWILTQNTY-------RKPVKHHLSPTLAKELYLEDGKLIGSISAFQMFVNDPYQF 523 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + R LK+ D GT+ H ++ + + + F Sbjct: 524 FMERGLKIREPEIL--KFDPRIIGTVNHAVMEYYHDNKNIDPWTD--------VRKVFPM 573 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAKMAIESIGIHLTGFAD 903 + + + ++ + + + + + GI L G D Sbjct: 574 THPR---YRMIYDRNQDLMEQNVDFVDASMADTTFQVVSKERWFREETMFNGIVLRGIID 630 Query: 904 RIDLLKSGFVDITDYKTGD-NPKKETAQKLIDPQLSLEAAALKA 946 RID +V + DYK+ E + QL A + Sbjct: 631 RIDEN-DHYVQVIDYKSSQLAMTAENVKAGTQLQLLTYAMIAEK 673 >gi|148549740|ref|YP_001269842.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida F1] gi|148513798|gb|ABQ80658.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas putida F1] Length = 1160 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 111/986 (11%), Positives = 255/986 (25%), Gaps = 108/986 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ + G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + + L S P VS + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194 LA+ LAD+ D + W L + ++ + + ++ Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWASGEHVINTARGERKVLPPGNRWQAEL 194 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248 W L ++ + + + E + + P +I+ G + ++ Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ++ + + H I ++ T Q++ L Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSF---------------LPPDTSDMRNTDIL 345 + R+ + L + + + + + Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 E P + A + + E + L + ++ D + Sbjct: 375 ERWPPVDTTKDRSIRFHVAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 A+FG E L +E +R ++ L ++ + V Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554 Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 ++ E + L I + L + + ++S W + L Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E L + S G + +D + + Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N AS + +L + ++GQ Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPAKPGE 791 Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771 + L T++ ++ +P P S Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGEADEQSEPGLPPYQDAEALS 851 Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + P + + LK+ + + D + TL +E + Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911 Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ LP + ++ + L+ +++ V Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914 + E L G+ R+ + + Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996 >gi|293394675|ref|ZP_06638967.1| exodeoxyribonuclease V gamma subunit [Serratia odorifera DSM 4582] gi|291422801|gb|EFE96038.1| exodeoxyribonuclease V gamma subunit [Serratia odorifera DSM 4582] Length = 1123 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 111/978 (11%), Positives = 251/978 (25%), Gaps = 126/978 (12%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL++ + + I V + Q L+ + E G + I Sbjct: 11 DLLKTLTSALIDREPLA---------DPFQAEVILVQSPGMAQWLQMQLAEQFGIAANIA 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L + +L S +L L+ + + + + Sbjct: 62 ---FPLPASFIWEMFTRVLPGIPQESAFSKDAMTWKLMWLLPDMLTE----PEFVSLQHY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 LS LA +AD+ D +W L + + + A + Sbjct: 115 LSDDDDKRKIHQLAGRVADLFDQYLVYRPQW--LESWQRGERIDALSEAQQWQAPLWARL 172 Query: 196 TERLVELNAS--SPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVAN 251 E +L + + P + I G + P + + Sbjct: 173 VEYTRQLGQPEWHRANLYRRFISTLEQAQTCPPGLPPRVFICGISALPPIYLEALQALGK 232 Query: 252 HPNGAIVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHP 292 H + ++ + I ++ + Sbjct: 233 HIDIHLMFTNPCRYYWGDIQDYAFLARLQSRKRRHHQQAREQGLFRQPEQAAQLFDADGE 292 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--- 349 Q LL D L + + + + + LE+ Sbjct: 293 QRLSNPLLASWGKLGRDHLYLLAQMASLQEVDAFVDIAPDNLLHAIQHDMLELEDHAIIG 352 Query: 350 ------------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALIT 393 + ++L + + E + L L E+ + ++ Sbjct: 353 TTAQTLERSDNKRTLDPADRSISLHACHSPQREVEVLHDRLLAMLAEDPQMTPRDIIVMV 412 Query: 394 ADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 AD + + + IS SLL+ + Sbjct: 413 ADIDSYTPYIQAVFGNAPPERYLPFAISDRKARQAHPALQAFISLLDLPQSRFSAEQVLA 472 Query: 449 LVKHPLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV-----------LDR 495 L++ P +F E+ L + + +R + ++ L Sbjct: 473 LLEVPALAARFAIDEEGLRLLRRWVSESGVRWGLDDDNVRQLALPATGQHTWQFGITRML 532 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + ++ +E LA L + + + L ++ ++++W Sbjct: 533 LGYAMDSNIGDWQGVLPYDESSGLAAELAGQLAELLAQLADWR---QRLGEARTLAEWLP 589 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 L L + + L E + + D + +D Sbjct: 590 LCRRLLDSFFAADADTEVILALIE--QQWQQVIEFGQGARYPDAVPLTLLRDELAARLDQ 647 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 E + + + + R + F + L G+N+GV+P+ F Q + Sbjct: 648 ERISQRFLAG-QINFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMAQQVKRGDR 706 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASR---------WLQRLLVLGGTD 726 + + + + L + R + +LQ+ L G + Sbjct: 707 SRRDDDRYL-FLEAILSAQQQLYISFIGRSIQDNSERYPSVLVTELLEYLQQSYCLPGDE 765 Query: 727 FFDN---LKKRGQCYLDW---------------------TRKLDYTTKQPHYKRPKPFPP 762 D ++ G+ L W L ++ P Sbjct: 766 HLDADGSAQRVGEHLLRWHARMPFAVENFLPEAEAQSYAAEWLPAADRRGEAHPVFNQPL 825 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 S ++ + P + + L ++FI + D TL + + + Sbjct: 826 PLEPQTQLSLDDLLRFYRHPIRAFFQLRLGVNFILEETELADEEPF-TLDNLSRYQFNNQ 884 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 +N + + P +I W+ ++S + E+ + S Sbjct: 885 LLNTLIEDQDATRLYQRIRASGGLPYGPFGEIYWQKQQEEMSELAAQVREERRES----- 939 Query: 883 VNIPAKMAIESIGIHLTG 900 ++ ++ G+ L G Sbjct: 940 --SSLELDLDIAGVRLGG 955 >gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541] gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541] Length = 764 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 71/686 (10%), Positives = 157/686 (22%), Gaps = 119/686 (17%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A E+R + G I + + L + NL + Sbjct: 104 VTFTNKAAAEMRHRINHLIGTSEGGMW---IGTFHGLAHRLLRQHYLDA-NLPQDFQILD 159 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + RLI + K P + + E + + Sbjct: 160 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 201 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222 + + N W + + E + Sbjct: 202 HIESYGNPVEAT-WQK-------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 253 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I++ + + +A +++ D W ++ Sbjct: 254 YRERFTNILVDEFQDTNSIQYAWIRILAGDTGKVMIV--GDDDQSIYGWRGAQVENIQRF 311 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 ++ G + + + +T N+ Sbjct: 312 LNDFP--------------------------GAETIRLEQNYRSTNNILKAANTLIANNS 345 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400 D L + ++L A NE +EA + ++ + + A++ +R Sbjct: 346 DRLGKNLWTEDGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAILYRSNAQSR 405 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 ++ L + + I G S L I ND + +V P G Sbjct: 406 VLEEALIQSAMAYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGER 465 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 R T ++ ++ L Sbjct: 466 TLDTVR------------------------------QTARDQQLTLWEACEYLLREQVLG 495 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 I + + + ++ K + + + EE Sbjct: 496 GRAASSIERFLELIDALAKETQDMPLHVQADRVIKDSGLRAMYEQEKGEKAQARIENLEE 555 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + FS E + A + V + ++ ++ L Sbjct: 556 LVNATRDFSYQDEDQDLMPLQAFLSHAALESGESQADV-----SQDAVQLMTLHSAKGLE 610 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 F + + G+ E F S++ + E+ + M L T Sbjct: 611 FPVVFMVGVEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAM----EKLTIT 657 Query: 701 RSLREN----NIPTIASRWLQRLLVL 722 + + SR++ L Sbjct: 658 YAESRRLYGKEVYHRPSRFIGELPTE 683 >gi|260912919|ref|ZP_05919404.1| exodeoxyribonuclease V gamma subunit [Pasteurella dagmatis ATCC 43325] gi|260632909|gb|EEX51075.1| exodeoxyribonuclease V gamma subunit [Pasteurella dagmatis ATCC 43325] Length = 1129 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 98/964 (10%), Positives = 232/964 (24%), Gaps = 139/964 (14%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + V + Q L+ + + G S I +P + ++ D L + Sbjct: 37 VVLVQSPGMAQWLKWQIAQKKGIASNIKFPMP-----ASFIWQQ-YLDNLPQVEEQSQFN 90 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 RL+ + + L S L +AD+ D Sbjct: 91 KTSMTWRFMRLVPNYLS--GQSFSTLRHYLAYSAQSEQYKLYQLVHKIADLFDQYLVYRP 148 Query: 165 KW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-------LNA 204 +W + L ++ + W + + N Sbjct: 149 EWLKAWESGQDDMVVQKLTQKLPANDDPILQQIVQDVRWQASLWRALVQDIQAETQNENV 208 Query: 205 SSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 + + K + I G + ++ H + + Sbjct: 209 VHRAYLHTQFLSFLQQDSPKNIPKRLFIFGISALPIGYLETFKALSYHCDVHLFFTNGCR 268 Query: 265 HIPTAIWNTITE--------------------------KSTNITSSNTTYSTHPQYSLAK 298 + + + HP Sbjct: 269 EYWGDLVDHKFRHKLAQMQRISYYNQQSHAIYQEDPTKALEQTATDEEILEGHP------ 322 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD----TSDMRNTDILENKIPNIQK 354 LL D L + + V + + L R + N N + Sbjct: 323 LLSSWGKLGRDFLYLLTDLEQSENVNSVEAYTDLSERNLLSQVQARILRLDGNTGLNFTE 382 Query: 355 CFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL---- 406 + + E + L + K ++ A+ + + Sbjct: 383 NDRSLTFHSCHSPMREVEVLQDYLLHLFQNNPEITPKDVVVMVANIDRYTPYIQAVFGQK 442 Query: 407 ---TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 + I IS + + LL + L+ P + F + Sbjct: 443 KRNDKSSIPFSISDNKLSENDVLIASFIHLLKMREAQFTAEEVLALLDIPAIRNKF-QID 501 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L+ + V G + + + + R + ++ Sbjct: 502 LTDLEQVHHWVVNAGIRFGLEKTTDSQQTNYNSWQAGLERMLLGYAMREENGIWQDSLGF 561 Query: 524 -------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + + +W + L N + L Sbjct: 562 DNSYGLGGQLAGKLAEFITCLSDWYEQMQQPQLALNWQENLTALLANFFDSDEDNSATLL 621 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + ++ + ++I +T N D++ ++ + + + L Sbjct: 622 YIQD--VIEQSIAQIQQTHFAENINIDVIADMLASALEDDPNTMRFLAG-KVNFCTLLPM 678 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 R + F + L G+N+G +P+ N F + E + Sbjct: 679 RSIPFKVVCLLGMNDGEYPRQQTPNSFDLMKHDRRKG--DRFRRDDDCYLFLEALLSAQE 736 Query: 697 L-IYTRSLRE--NNIPTIASRWLQRL--------------------------LVLGGTDF 727 + R +N S + +L +F Sbjct: 737 YFYVSFVGRSIIDNQAKEPSVLVSQLLDYVAEKLAQNDDKNWREHLVQQHPMTAFSPENF 796 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 N + + +L + + + + + + + S E+ + +P A + Sbjct: 797 TKNDRSFAKQWLPLANRENANQFENFIQPIEQMLLDDDREIRLS--ELIDFVQNPVAFFF 854 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELI--KKRINKNTPEINHLMKQI----IDS 841 +R L + + + T+ +L + + + + + E + Q+ Sbjct: 855 KRRLGVY-LTGLDESIADTENFSL--DALEQYQINDALLYCDEDETDTFFAQLKIKGALP 911 Query: 842 HFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 E N+ + + +L+ + +IQS + + + L G Sbjct: 912 RGEFANIYANKQKEAVQELKEKIADYLQQDYQIQS--------VDLTLKTSKGKVRLVGN 963 Query: 902 ADRI 905 DR+ Sbjct: 964 IDRL 967 >gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] Length = 1123 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 76/830 (9%), Positives = 178/830 (21%), Gaps = 98/830 (11%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIAL-- 214 + E+ + L L +K A FL + L + + Sbjct: 313 LRVEDTRPARLALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTAPA 372 Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCH 265 + A + + G I++ + + P +++ +A + D Sbjct: 373 VAAWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFIVGDKK 432 Query: 266 IPTAIWNTITEKSTNITSSNTTYS-----THPQYSLAK--LLDFLDIKREDVKRLGNVSN 318 + + + + Q + I S Sbjct: 433 QSIYSFQGADPREFDRMQREFGLRLSATNSPLQSRVLAYSFRSSRAILTTVDCCFDQSSE 492 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIA 377 + F + + + V + ++ A +A A Sbjct: 493 SGFTPEQGHKAFFDTLPGRVDLWPVVEKPEEEEPPAWHMPVDIRATNDPAILLARQVAAA 552 Query: 378 LRMSLD-----------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 +R + + L+ L + E G+ I + + Sbjct: 553 MRDMIAARQAIPDSKSPSGFRAVQPGDFLILVRRRSALFHEIIRECKAQGLPIAGADRLK 612 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 + L L +LL+ + D +A+A ++ PL + + Y + Sbjct: 613 VGAELAVRDLEALLSFLATPEDSLALAIALRSPLFGWSEAQLYDLAQGR-NRPYLWEELR 671 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 VL + + R+ LL + + Sbjct: 672 AHEAERPEVMAVLHDLRNHADFLRPYDLIERVLTRHDGRRRLLARLGTEAEDGIDALLAQ 731 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + +W E + + + Sbjct: 732 AMAYESR------------------AVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTV 773 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 + + ++ ++ + G D Sbjct: 774 HGAKGLEAPVVILPECGTWRMPNAPQIVTQSGHALWTGRADD------------------ 815 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-LQRL 719 + + + + + + + + + +QR Sbjct: 816 ---MPPTLAKAIEAERRALLAERDRLLYVAMTRAETWLIVAAHGDLGKQGDTWYDKVQRG 872 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + G ++ G T P Q + +K L Sbjct: 873 MQAAGAVPHSFVQGPGFRLDHGIWAETETVSAPPALSRTVTLDPLFQRPAPLPARLKTLS 932 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 K + RG H ++ L L+ Sbjct: 933 PSDLG-----GAKALPGERGLDEEAAKRRGRQIHRLLEFLPTVPAADWPGTAARLL---- 983 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHL 898 N L + L + + ++ G + Sbjct: 984 ------SNGSDAATGDELALLLAEADKVLTRPSLSSLFTPDALTEVAVTAHLAALHGRRI 1037 Query: 899 TGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 G DR+ + ++ + D+KT + Q+ A AL Sbjct: 1038 HGIIDRLIIDET-RILAVDFKTNALVPDTARDCPDALLRQMGAYAHALSQ 1086 >gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] Length = 764 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 90/765 (11%), Positives = 191/765 (24%), Gaps = 116/765 (15%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A L L R P + + T +A +E+R + G +P + + Sbjct: 45 TAALTARLAWLLRQRLAWP---SEILCVTFTNKAAREMRERVGHLIGPAVEGMPWLGTFH 101 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + ++R EL L + D L + L Sbjct: 102 AIAAKM-----------------LRRHAELVGLTSNFTILDTDDQLRLLKQ--LIQAEGV 142 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + W A+ LA +ID + DL AL+NE Y F + Sbjct: 143 DDKRWPARQLAGLIDRWKNRGLNPADLDALENEAYANG--RGQRFYALYQDRLRSI-NAC 199 Query: 203 NASSPVGYQIALMRAEAEHLM--KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + + + + + R E + L + +++ + + +A V+ Sbjct: 200 DFGDLLLHMLNIFRRERDVLEQYQQRFRYVMVDEYQDTNAVQYLWLRLLAQGRRNICVV- 258 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W + + P + +L + + E Sbjct: 259 -GDDDQSIYSWRGAEVANILRFEKDF-----PGAKVIRLEQNYRSTPHILGAASGLIEEN 312 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 R L + V ++ + EEA + + Sbjct: 313 SER---------------------LGKTLWTELDGGDKVRIVGVWDAPEEARRVGEEIER 351 Query: 381 SLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 E A++ + R + + G+ I G + L I Sbjct: 352 LEREGCPLDAIAILVRAQFQTREFEDRFLQIGLAYRIVGGFRFYERAEIRDALAYLRLIA 411 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 +D +A + P G L R A + LR D +L + + Sbjct: 412 SPSDDLAFERIWNTPKRGLGDKTLEKLHRYARAQSIPLLRAAIEIADTDELPARARGTLV 471 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + +S + +L + ++ + Sbjct: 472 ALARDFARWRDESARLTPAELARTVLDESGYTAALQAERSTDANGRLENLSELARAMEEY 531 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 T + + +E Sbjct: 532 ETLSDFLEHVSLVMDNDNSADEA------------------------------------- 554 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + ++ ++ L FD + L G EGV+P + + + L + Sbjct: 555 ---------KVTVMTMHGAKGLEFDQVFLPGWEEGVFPSQRSLD---------EGGLASL 596 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRG 735 E+ A A +++ + R +I SR++ L + + ++ Sbjct: 597 EEERRLAYVAITRARKRCTILHAANRRIYGQWTSSIPSRFIAELPEVHVVE-ESSMSGGA 655 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 + + +P + + + Sbjct: 656 SLWRAQWSEQSDPFAHVARNQPGKVASRGPGWQRAAAQPLNTAPR 700 >gi|110598178|ref|ZP_01386455.1| exodeoxyribonuclease V, gamma subunit [Chlorobium ferrooxidans DSM 13031] gi|110340192|gb|EAT58690.1| exodeoxyribonuclease V, gamma subunit [Chlorobium ferrooxidans DSM 13031] Length = 1071 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 96/922 (10%), Positives = 238/922 (25%), Gaps = 90/922 (9%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 L S I + ++ + L E G + + + + L + Sbjct: 29 ALQSEMIVLQSRGMQRWLSMELASRFGVWANGH---YPFPNAMVTGLFECMQLDQPDSSS 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S ++ RL+ ++ L+ + LA +AD D Sbjct: 86 FSKEVMTWKIIRLLGEMTELEVFRPL----QTYLADDRNGLKCFQLAGKIADTFDQYTLF 141 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + W W + + E + + R Sbjct: 142 RSDLLSGWEAMEDSGAGEWQAVL---------WRKLVDEASGKHRGSLKDEFCRKIRSRQ 192 Query: 223 --MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I + G + ++S V+ + + + I + Sbjct: 193 GHVARFPERIALFGISSLPGFYLEMLSAVSEIVDVNLFILSPTKEYWGDIVSRRRVAGMP 252 Query: 281 ITSSNTTYSTHPQYSLA----KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 +P + + + ++ D + G ++ Sbjct: 253 AAEKALHTEGNPLLASLGTIGRDFSGMVLELNDDAVVEEELYVDPGEDSLLHLVQSDMLN 312 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE-----NKKKSAL 391 +D + K+ V + + E + L LDE + + Sbjct: 313 LADTGSDGVRRKV---DAADRSVHIHSCHSPLREIEVLHDNLLFMLDELPGLKPRDILVM 369 Query: 392 ITADRNLARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 +T + + R G I+ L+ +S + LL+ + Sbjct: 370 LTDVEAYSSYISTVFGRSGEGVPALPYTIADRTFLNEGEIASSMLKLLDIEGSRMTAPQL 429 Query: 447 ATLVKHPLAKFGFP-EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 L+ P F E+ + + + L R + + Sbjct: 430 FDLLSTPPVSRRFNLEESGLETIREWIEETNIRWGINESDREARDLPAYRENSWRAGLDR 489 Query: 506 PHWQSRLSEEDKELAVLL---------VDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + E + A +L V+ + + + + ++ +W + Sbjct: 490 LLLGCAMPESGELFAGILPCEDMEGGAVELLGILAGFIDSIERLAIRIRSARTLEEWQEF 549 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L + L ++++ ++ + + + ++ E Sbjct: 550 FLAMLNEFIKADEESEREL--AAIHGVVNTISDFGPKSRFTGEVQPAVMLSWLRMNLEQE 607 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + L R + F + + G+N+G +P+ F + ++ Sbjct: 608 EHGLGFMTGA-ITFCSMLPMRSIPFRVIAMLGMNDGAFPRQDRSPGFDFIAREPRRGDRS 666 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 ++ + + + L + + +N S + LL F + +R Sbjct: 667 -KRSEDRYLFLETLLSARDRLYLSYVGQSVRDNSEIPPSVLISELLDAIERGFLFSGNER 725 Query: 735 GQCYLDWTRKLDY----------------------------TTKQPHYKRPKPFPPLEAQ 766 + L +L +P L + Sbjct: 726 AEKRLVVRHRLQAFNAAYFTKGSPLFSYSRENFQALAGFASAGSSSVPFIDEPIEALSEE 785 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKR 823 +T S + + ++P A + L + I ++ + G + + EL+ + Sbjct: 786 HKTVSLDRLIRFYDNPAAFFLSERLGIRFGGSIKPLEEREPFSVGGLDGYYMKQELLDEE 845 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 + PE + I + P + +F + + Sbjct: 846 LQGGNPE---RLLPIFRA--RGLLPPARHGEMVFRKMVDEVKAFGGVVRQKTGGGAPLA- 899 Query: 884 NIPAKMAIESIGIHLTGFADRI 905 P ++ LTG +R+ Sbjct: 900 --PLNAELQLGTFRLTGSLERL 919 >gi|85859569|ref|YP_461771.1| nuclease [Syntrophus aciditrophicus SB] gi|85722660|gb|ABC77603.1| nuclease [Syntrophus aciditrophicus SB] Length = 817 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 68/600 (11%), Positives = 161/600 (26%), Gaps = 54/600 (9%) Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDL--KSLVLDRIATQKNNTHVPHWQSRLSEE 515 + + + R + +L ++ + +A + + + R Sbjct: 226 PPDYETALSLVRRIGIAERRHDGELPGFTELAERAALPTLLAREIDTFLRNYGSDREQLF 285 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 L L ++ + + + + N + +L L R+ Sbjct: 286 IVPLDEKLSFYLWEFLFRPLGGQVNFAPWLPFTHFAAAQRLREGIRDGKGLAAMRRDLVS 345 Query: 576 WFEEEGKTLSSL-----------FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L ++ + + EW+ + I + ++ + + Sbjct: 346 ELTTRWNELDEADHSAFEGGITLCDELDRLRALMPFTENEWLPLAEHFIAVKKLRLRGRR 405 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + ++G ++ + + ++ +N ++P+ P+L+ + + E Sbjct: 406 DAPIQVVGLGDATGVPYARTVILPMNSDIFPRRPFSGPYLNLIHLPRIYRTQYEADDLAL 465 Query: 685 AHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 H+ + P+ +L G + + Sbjct: 466 RQFLSFGRTA-HIAALYDQANGDAPSAHFSFLA--TEFGQRMVKRRMVPAALRGPAGSLV 522 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK-DP 803 ++ T + R T+SFS +K P + + F+ D Sbjct: 523 IENTDELKERLRR----------HTWSFSSLKNFFTCPCRFILEDMEAVKPPSCFEDKDS 572 Query: 804 DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 G H EL + R + + D + + + + Sbjct: 573 TNLLIGEFLHRFFAELKEHRPAVLHWQELFDTRWESDEDLRMKLPDQAVR---KAIVQSH 629 Query: 864 SHSFLEHEEKIQSSI----EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 E++ SI E + L G DR+ + ITD K Sbjct: 630 LADIAAWEKETGRSILFSDEVTEAELELSAPFGGGRYRLKGRIDRLQRDGDQTL-ITDLK 688 Query: 920 TGDNPKKETAQKLID-----------PQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 + +L+D QL + A + A+L ++R + + Sbjct: 689 YKEKKTYAEKDRLVDRLEKTDVFDDRFQLLIYAYLALQNKRATPGLLDAAHL-FLRPRMR 747 Query: 969 FKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + + + D E L ++ L + F + R Y L Sbjct: 748 GDYEGHLAKEDLDACDATMEGIAGRLDALLAL-----ERFTPNFRA--DGCSYCPYKALC 800 >gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032] gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032] gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032] Length = 763 Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 89/745 (11%), Positives = 210/745 (28%), Gaps = 98/745 (13%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + RY ++P + T +A E+R ++ G + + + + Sbjct: 43 TAVLTRRIAYLMRYRGVHPQ---QILAITFTNKAAAEMRERVSQLVGPVAERM-WVATFH 98 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 V + + R L + L Sbjct: 99 SVC------------------------VRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMI 134 Query: 143 ANAIWL------AKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKYW 195 A + L A+ L I ++ E E L + ++A F + Sbjct: 135 AKDLELDIKKFSARTLLGAISNLKNELVTPQEALADAERTHNPYETVVARAF-----SEY 189 Query: 196 TERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVA 250 RL NA +R EH + ++I + A L+ST+ Sbjct: 190 QSRLRRANAVDFDDLIGETVRIFREHPPVAEYYRRRFRHVLIDEYQDTNHAQYELISTLV 249 Query: 251 NHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 P+ + + D + T ++ + + L+ Sbjct: 250 GKPDQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFS---------NARTILLEQNYR 300 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + + + +N + ++ L + + ADNE Sbjct: 301 STQTILSAANAVISQNENRRPKNLWTALGEG-----------------EQIIGYVADNEH 343 Query: 369 EEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 +EA IA + +D + A++ N +R ++ R G+ + G Sbjct: 344 DEARFIASEIDNLVDHGMSYSDIAIMYRTNNSSRALEDVFMRTGVPYKVVGGTKFYERKE 403 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 + + L + +D + + ++ P G + + ++ Sbjct: 404 IRDIIAYLRVLENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISF---------- 453 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 ++L+ + E + + ++ +T L + Sbjct: 454 -GQALLDAALGKVDLLGARGKNAVIKFNELFDALRSELPTMVNEVTGLPDIGQVISRILD 512 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 + + LD +L ++ E + + ++ + G + ++ Sbjct: 513 ITGYKAELEASNDPQDGARLDNLNELVSVAREFSSDAANRMVNE-VPEGEAQPGSLQAFL 571 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 + ++ + D + + + + ++ ++ L F + L G +G +P + Sbjct: 572 ERVSLVADADQI--PDSDNGVVTLMTLHTAKGLEFPIVFLTGWEDGQFPHLRSLGDAKEL 629 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD 726 + L + + M RS N + SR+LQ + Sbjct: 630 AEERRLAYVGITRARKRLYMTRAML---------RSSWGNPVTNPPSRFLQEVPAELIDW 680 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQ 751 + + TR + T+ Sbjct: 681 RREEPQMSSAWAPRPTRSIPTKTRT 705 >gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 1224 Score = 99.2 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 79/706 (11%), Positives = 184/706 (26%), Gaps = 94/706 (13%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKST--------------------ILPIIKSLGDVV 85 V T++A EL + + + P I + Sbjct: 84 QVLGLTFTRKAASELAQRVRKRLETLANSPMYAAALGADDPRHEWFKNVAPTIAT----- 138 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + + ++ Y L P+ R++ A LI + + L + ++ IS A Sbjct: 139 YDSYAGTIVREYGLLVPMEPAGRIIGDAEQWLIAHEVVTNYGGALKTDKGVNTVISNVQA 198 Query: 146 IWL-AKNLADIIDIIETEEK----KWEDLHALKNEKYGMWWLLAADFLKI---------A 191 + A++ +D ++ E + EDL + K + +F++ Sbjct: 199 LSNEAQSHLADLDTVDRESQLAIQDLEDLSSTKKNDSSFFSDANKEFIEAQNVRVQMLGI 258 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLM 246 + + E L + + + +H + +++ + A L+ Sbjct: 259 VREYRETLRKRDLMTFDQQMSIAAELVTKHPRVGEEQRQRFRVVMLDEYQDTGQAQRVLL 318 Query: 247 STVANHPN--GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 ++ G V D ++ T + ++ Sbjct: 319 RSLFGEGKDPGLAVTAVGDPMQSIYMFRGATASNLEKFRADFA----------------- 361 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + L + + ++ P V + Sbjct: 362 --PAEKLELTTSWRNPSLVLNLANVVSRWSMED----RPLVSALNPREGSEEGTVRVAFH 415 Query: 365 DNEREEAISIAIALRMSLDENKKK-------SALITADRNLARRVKLELTRFGINIDISA 417 D++ +E +A + + K +A++ A + L G+ ++SA Sbjct: 416 DDKNQEIQWLAEHVAEHWETWVKSDQEKPFSAAVLVRRNADAVPIYEALKEMGVPAEMSA 475 Query: 418 GIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-----RAKNALE 472 G L + S L + +D A+ +LV G + + A Sbjct: 476 GPGLLELPEVKQVFSTLRVLVDPSDDEAVLSLVTSSRWALGAADIKALSDRAKQLHRAQL 535 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNT--HVPHWQSRLSEEDKELAVLLVDHILQ- 529 + L+ + + + V + + L D Sbjct: 536 ETGDTSAPADQRLQPLEDVFAKQPGQNLRDELQGVMEDPVAGAVGLGDALADLGDATDFG 595 Query: 530 -------CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF---EE 579 + L + S+ D L R Sbjct: 596 MSAEGSARLEKLSAELGFLRRHSMSKSLPDLVADIERMLGVRTEVITRWYSEPEHSIGTS 655 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + + E + +E++ DG +K + + IL +S+ L Sbjct: 656 HLDRFAEIVRSFSEISGASASTLVEYLLAAKEKEDGLETGEVTQKENLVQILTVHKSKGL 715 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 +D + + + + ++ L T + + Sbjct: 716 EWDLVAVPHAGRATYTDAEKPTTRGYKWTKNASRLPTHLRGDAEEY 761 Score = 69.2 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 38/341 (11%), Positives = 74/341 (21%), Gaps = 31/341 (9%) Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 LN+ + + QA R Sbjct: 898 LNDVLAFNEARQTFTDEMEKNPASGRDADSWPREQAPLLAARPGAAEGAQLVRDALHGVE 957 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + ++ Q T T ++ + H Sbjct: 958 ESFTAQAAQNQEPAQATQNPVATTSPQAPRTAITTAENWDVETTHLLEELRAEETATIEV 1017 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + + P RGT FHN + + + + Sbjct: 1018 PLDVRLTATEAVGLRRDRDEFARRRRRPVPLEPKPFAK-RGTAFHNWVEQHYGQVTLLDD 1076 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ + + FLE E ++ I Sbjct: 1077 EQLPGASDATLQD----------------PALEHLKQRFLESEWASRAPAS-----IEGA 1115 Query: 889 MAIESIGIHLTGFADRIDL---LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 ++ G G D + + + D+KTG P QL++ A Sbjct: 1116 YSVALAGHVFEGRIDAVFHFSDDPAKGWMVVDWKTGKKPAGAEMNAAK-MQLAVYRLAWA 1174 Query: 946 AGSFSQIDCRKV-----ANLFYIRLKQKFKIDCITNDKKKY 981 SQ+ A Y+ + + D + + K+ Sbjct: 1175 QVLSSQLGIAVPVEEVRAAFHYVYANETVEPDTLPSAKEIE 1215 >gi|304396687|ref|ZP_07378567.1| exodeoxyribonuclease V, gamma subunit [Pantoea sp. aB] gi|304355483|gb|EFM19850.1| exodeoxyribonuclease V, gamma subunit [Pantoea sp. aB] Length = 1125 Score = 99.2 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 99/940 (10%), Positives = 223/940 (23%), Gaps = 93/940 (9%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 AS + V + Q L+ E + G + I L + +L + Sbjct: 28 DPFASEMVLVQSPGMAQWLQMELAQTFGIAANIE---FPLPASFIWEMFVRVLPDIPVES 84 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S +L + + + L L+ +AD+ D Sbjct: 85 AFSKASMGWKLMHRLPVMLEQEEFTSL----RHYLHDDGDKRKLFQLSARVADLFDQYLV 140 Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 W + + L +T+ L + ++ + Sbjct: 141 YRADWLNSWERGETIEGLGEAQRWQAALWRDLVSYTQALGQPEW-HRANLYSRFIQTLGQ 199 Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + I G + P + + + H + ++ I + Sbjct: 200 AKSTPENLPKRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRDYWGDIQDYAFLAK 259 Query: 279 TNITSSNTTYST-------------------HPQYSLAKLLDFLDIKREDVKRLG----- 314 + Q LL D L Sbjct: 260 LQSRQRRRHGADESRGLFRDAEQAPALFNDAGEQQLTNPLLASWGKLGRDNLFLLSQMDS 319 Query: 315 ----------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 N ++ + ++ + +A+ Sbjct: 320 NDDIDAFVDVEPDNLLHCMQHDLLNLQDNAVIGLNAAELAHSDQKRCLDPADRSIAVQVC 379 Query: 365 DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDI 415 + + E + L ++ + + ++ AD + + + I Sbjct: 380 HSAQREVEVLQDHLLAMMEADPTLKARDIIVMVADIDAYAPFIQAVFANAPADRYLPFAI 439 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALEL 473 S LL + L+ P F E L + + Sbjct: 440 SDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPALASHFAIDESGLRLLRRWVSE 499 Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-D 525 +R + + L + H + + L + Sbjct: 500 SGVRWGLDDASVEALSLPVTGQHTWRFGLQRMLLGYAMESHNGDWEGILPYDESGGLAGE 559 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 L + ++ W L L + L E + Sbjct: 560 LAGHLAELLSRLNHWRQRLAEPRPLAAWLPLCRELLNAFFSPDAETEAALLLVE--EQWQ 617 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 L ++ D + +D + + + + + R + F + Sbjct: 618 QLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAG-QINFCTLMPMRSIPFQLVC 676 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704 L G+N+GV+P+ A F QS ++ M + R L + R Sbjct: 677 LLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYL-FLEAMISAQRQLYISYIGRA 735 Query: 705 -ENNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 ++N S + LL L G + + + + + Sbjct: 736 IQDNTERYPSVLVTELLEYIGQSFYLDGDGHLELDESAERVRMHLQHLHSRMPFAAENFK 795 Query: 757 PKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 P A+ + + Q D P L L+ + F + P R Sbjct: 796 PAARLQSFAREWLPAAQGMGQPQPDFVQPIEAPVTDALTLEALLRFWRHPVRAWFHQRLG 855 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKISH--SFLE 869 + + +++L + I++ + + H +F E Sbjct: 856 VSFWLEEDELPDSEPFSLDNLERYQINAQLLNALVEGEDTQRLYTYHRAAGNLPYGAFGE 915 Query: 870 HEE-KIQSSIEKIFVNI--------PAKMAIESIGIHLTG 900 + ++++ + ++ ++ + LTG Sbjct: 916 LFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVSLTG 955 Score = 44.1 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 78/737 (10%), Positives = 176/737 (23%), Gaps = 72/737 (9%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNPPVSN 105 A + L + ++ P I + + + D+L ++ S+ Sbjct: 425 VFANAPADRYLPFAISDRRASQA--HPAIVAFLHLLALPDSRFVSEDVLALLDVPALASH 482 Query: 106 IQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 RL+ W ++ D LSLP++ + + +E+ Sbjct: 483 FAIDESGLRLLRRWVSESGVRWGLDDASVEALSLPVTGQHTWRFGLQRMLLGYAMESHNG 542 Query: 165 KWEDLHALKNE-----KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 WE + + L +W +RL E + + Sbjct: 543 DWEGILPYDESGGLAGELAGHLAELLSRLN----HWRQRLAEPRPLAAWLPLCRELLNAF 598 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 T+ +++ + + A++ L + + Sbjct: 599 FSPDAETEAALLLVEEQWQQLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAGQ 658 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---- 335 + + P + L + + LG + R S+ Sbjct: 659 INFCTLMPMRSIPFQLVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLE 718 Query: 336 ----TSDMRNTDILENKIPNIQKCFSDVALIEA-----------DNEREEAISIAIALRM 380 + I + + + V + E + E A +RM Sbjct: 719 AMISAQRQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLDGDGHLELDESAERVRM 778 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L + + A R R + G P + + + Sbjct: 779 HLQHLHSRMPFAAENFKPAAR-LQSFAREWLPAAQGMGQPQPD-----FVQPIEAPVTDA 832 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALE------LVALRGNKNSYDIMDLKSLVLD 494 A+ +HP+ + +S E + + L +LV Sbjct: 833 LTLEALLRFWRHPVRAWFHQRLGVSFWLEEDELPDSEPFSLDNLERYQINAQLLNALVEG 892 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW- 553 + H + D + + +VT +++ S NL + Sbjct: 893 EDTQRLYTYHRAAGNLPYGAFGELFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVS 952 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 +T +Q L R + L L + + + + Sbjct: 953 LTGWLTQVQGDGLLRWRPGVLNMNDGLLLWLEHLVYCALGGTGSSRMFGRQQSRWCFLAV 1012 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 + L + L G+ + + N + +L+ Sbjct: 1013 SQQEAIAA----------------LNEYVAGYLAGMRQPLMLLNRSGGAWLTASYDKKSQ 1056 Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 ++ L+ S + +LQRL + + + Sbjct: 1057 QLLTDEA--------TQLKARNRLLTAWSGNYQVEGEGSDPYLQRLCRVLDVPQLQQITE 1108 Query: 734 RGQCYLDWTRKLDYTTK 750 Q + + Sbjct: 1109 AAQRWYLPVLAAHQDDE 1125 >gi|323704722|ref|ZP_08116300.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536184|gb|EGB25957.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium xylanolyticum LX-11] Length = 1036 Score = 99.2 bits (245), Expect = 4e-18, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 95/294 (32%), Gaps = 35/294 (11%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN---- 825 S S + + P+ + +L + + + + G+ +H I+ + + + Sbjct: 735 LSASSLNSYVACPFRFFVETLLDIKVSDESIEF--KKNMGSTYHEILMKYYSENKDLYDV 792 Query: 826 --KNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF---LEHEEKIQSSIEK 880 + ++ + + +D L ++ +F I L + +K + + Sbjct: 793 NEERLKDVIDKICENLDGIKNDIILEKFKKEMYDTIFKLIVDDISNRLNYYKKTGAELIP 852 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGDNPKKETAQKLID 934 + + ++ G G DRIDL +S G I DYK G +D Sbjct: 853 LMLEKKFEIDSHYGGYRFYGKIDRIDLERSIDGNLTGKYLIYDYKLGAVGGLRQCIDGLD 912 Query: 935 PQLSLEAAALKAGSFSQIDCRKVA--NLFYIRLKQ-------KFKIDCITNDKKKYSADE 985 QL A + ++ + + L Y ++ + D Sbjct: 913 FQLPTYYMAAEEILINEFGIKNPSCLGLLYYSVENIKRNGIMLDEYKKYLFKGNAGPRDV 972 Query: 986 LSEKSLKNLIEIVT--------LLQNGEQPFISHLRLSEKSNIQSEYDHLARVA 1031 LS+ S +++ + + G + + SNI+ Y + R Sbjct: 973 LSKSSFDVIMDWIEKKGIENVGKMMTGSFN-LPEECPYDDSNIRCPYVSICRYD 1025 >gi|262039833|ref|ZP_06013107.1| exodeoxyribonuclease V [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042802|gb|EEW43799.1| exodeoxyribonuclease V [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 946 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 101/950 (10%), Positives = 235/950 (24%), Gaps = 113/950 (11%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ AL+ + DP + V + Q L+ G + I Sbjct: 11 DVLEALMEFIVERQRLDDPFQAE-----MVLVQSTGMAQWLQMTLAARFGIAANIE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L +L S +L L+ + + LS Sbjct: 63 PLPASFIWDMFVRVLKDIPGESAFSKQSMSWKLMTLLPQHLEED----DFILLRQYLSDD 118 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTER 198 LA +AD+ D +W + L A +T Sbjct: 119 GDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAGQRVEGLGDAQQWQAPLWQALVSYTAE 178 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L + + + + I G + P + + + H + Sbjct: 179 LGQPQW-HRANLYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVY 237 Query: 257 IVLPGLDCHIPTAI-------------------WNTITEKSTNITSSNTTYSTHPQYSLA 297 ++ + I + + Q Sbjct: 238 VLFTNPCRYYWGDIKDPAFLAKLLSRQRRHHREARALPLFRDTEQAPGLFNDAGEQNVGN 297 Query: 298 KLLDFLDIKREDVKRLG---------------NVSNEMYGRSMVISKSFLPPDTSDMRNT 342 LL D L N ++ I + Sbjct: 298 PLLASWGKLGRDYIYLLAGLERYEELDAFVDIAPDNLLHNLQSDILELRNAAVAGQSAEA 357 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + +++ + + E + L L+ + + ++ AD + Sbjct: 358 FAHSRDKRPLTLDDRSLSIHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDS 417 Query: 399 ARRVKLELTRFGI-----NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + IS + +LL+ + L+ P Sbjct: 418 YSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLALLDVP 477 Query: 454 LA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTH 504 + +F E+ L + + +R + ++ +L + Sbjct: 478 VLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAM 537 Query: 505 VPHWQSRLSEEDKELAVLLVDHILQCIT-PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 S + + L+ ++ + L+ + +++W + L + Sbjct: 538 DSREGEWQSVLPYDESSGLIAELVGNLASLLMQLNLWRRGLAQQRPLAEWLPVCRDLLND 597 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 L + L E + ++ +E + D + + +D + + + Sbjct: 598 FFLPDSETEAALALIE--QQWLAVIDSGLEAQYGEQVPLTLLRDELAQRLDQQRISQRFL 655 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 + I + R + F + L G+N+GV+P+ F +M + Sbjct: 656 AGP-VNICTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMSQKPQRGDRSRRDDD 712 Query: 684 AAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRL-------LVLGGTDFFDNLKK 733 E L + R +N S +Q L L G + D Sbjct: 713 RYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQSHCLAGDEELDCDAS 772 Query: 734 RGQCYLDWT-----------------------RKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 + T L +Q P + Sbjct: 773 EARVKAHITHLHTRMPFDVANFQEDENKSYAREWLAAAGQQGEAHSDFIQPLTAPPIDSL 832 Query: 771 SFSEIKQLINDPYAVYARRILKLD---FIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 F ++ + P + ++ L+++ D T G + + +L+ I + Sbjct: 833 PFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEE- 891 Query: 828 TPEINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 +++ + ++ + R ++ + ++ QS Sbjct: 892 -QDVSAMFRRFRAAGELPYGAFGELVWETQRLEMQALAERVMAERQQAQS 940 >gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] Length = 846 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 87/735 (11%), Positives = 194/735 (26%), Gaps = 89/735 (12%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E+R + G ++ + + + Sbjct: 92 TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 147 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A+L+ + D + Sbjct: 148 STCVRILREQ--------------------AQLVAGLNSNFTIYDSDDSKRLLAMISKDM 187 Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + L I ++ E A + A + RL Sbjct: 188 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 243 Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + NA +R EH + ++I + A L+ + Sbjct: 244 QANAVDFDDLIGETVRIFKEHPQITEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 303 Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 A + D + T ++ +P + L + + Sbjct: 304 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 358 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +V ++ R + K+ + ADNE +EA I Sbjct: 359 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 397 Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 A + D+ + A++ N +R V+ R GI + G + + Sbjct: 398 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 457 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L + D +++ ++ P G + + V+L+ + L Sbjct: 458 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLG 517 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 ++ + E + D I I ++ K + D Sbjct: 518 ARGCNAISGFVNMMSGLRDSAAESVNEITGMPD-IGNVIAQILDITGYKAELEKSNDPQD 576 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611 +L L + + + S + G + +++ ++ Sbjct: 577 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 634 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + D + + + + ++ ++ L F + L G +G +P A Sbjct: 635 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 680 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726 L ++ + + R L TR++ N + ASR+L + Sbjct: 681 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 738 Query: 727 FFDNLKKRGQCYLDW 741 + + + Sbjct: 739 RREEPESSFDAWGQP 753 >gi|68536027|ref|YP_250732.1| RecB family exonuclease [Corynebacterium jeikeium K411] gi|260578719|ref|ZP_05846627.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734] gi|68263626|emb|CAI37114.1| putative RecB family exonuclease [Corynebacterium jeikeium K411] gi|258603216|gb|EEW16485.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734] Length = 266 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 81/266 (30%), Gaps = 28/266 (10%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S P R I KL+ +GTL H ++ L + T Sbjct: 6 ALSPSRANDYKQCPLLYRFRAIDKLEEPSTV-----AQVKGTLVHAVLENLHQLPRGSRT 60 Query: 829 -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 P +++ + K E +P + + + + + E + Sbjct: 61 YPAAVKMIRPEWEKMLAKDPELSELVPEQSTVEFWEECRALVKGYFQMEN--PDGFDAHE 118 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 + + + + GF DR+D+ ++G V + DYKTG P A Q+ A Sbjct: 119 CEQFVNLTLP-NDVPVRGFIDRVDIAETGQVRVVDYKTGKKPAPRFADSAR-FQMMFYAL 176 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 ++ + L Y+++ + + + L E+ + Sbjct: 177 VWWR-MTGELPTQ--LRLMYLKVSDDMVLQPTATE---------LAAFERELGELWGRIL 224 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 + R + K + L Sbjct: 225 ADVRSGNFQPR-TTKLCGWCHFQDLC 249 >gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 796 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 70/672 (10%), Positives = 149/672 (22%), Gaps = 56/672 (8%) Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 LA L ++ + K LA I + E + D+ A Sbjct: 112 LAGLPQSFQILDTQDQLSAVKRLCKQFNVDEERFPP--KQLAYFIAGCKEEGLRPRDVEA 169 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGT 226 ++ + + E+ + ++ + Sbjct: 170 HDSDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSFELLRDNDPVRVHYQRR 220 Query: 227 KGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I++ + + +A V+ D + + Sbjct: 221 FRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGSVIAVGDDDQSIYAFRGARVGNMQ 280 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 ++ S + Sbjct: 281 DFVREFDVR--------------------------HQIKLEQNYRSYSNILDSANALIAH 314 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 N+ L + Q V + EA + EA I +R + E + + A++ Sbjct: 315 NSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWIVDEIRQLVREGPMPRSEIAVLYRSNA 374 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + G+ + L + +D + +V P Sbjct: 375 QSRVIESALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGI 434 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + +L +S +L R Sbjct: 435 GARTLEQLQDAARGSGCSLHDAVSSVPGKAGVNLGAFVAMVDVMREQTQGRNLRAIIGQV 494 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + L++H + S + + LDE Sbjct: 495 LESSGLLEHYRNEKEGADRLENLDELISAAESFV-TQEGFGRDAVALPLDETGAALTQSP 553 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +G + + + +T + ++ S+ Sbjct: 554 ASQGLDPNRPLLQQPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASK 613 Query: 638 LLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 L FD + +GG+ E + L + T + +H + Sbjct: 614 GLEFDCVFIGGMEEGLFPHENAMSDQGGLEEERRLMYVAITRARKRLYLSHAQTRLLHGQ 673 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 RS + +P A +WL G + + Y R Sbjct: 674 TRYNVRSRFFDELPEEALKWLT--PRQQGFGSYAPDSRAASAYGAGARAGFGFNAAAFAS 731 Query: 756 RPKPFPPLEAQP 767 P P E Sbjct: 732 PPVPPRKEEPAH 743 >gi|26991358|ref|NP_746783.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida KT2440] gi|24986422|gb|AAN70247.1|AE016664_3 exodeoxyribonuclease V, gamma subunit [Pseudomonas putida KT2440] Length = 1160 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 112/986 (11%), Positives = 262/986 (26%), Gaps = 108/986 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ + G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIDVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + + L S P VS + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRSVLGRSE--IPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194 LA+ LAD+ D + W L ++ + + ++ Sbjct: 137 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWATGEHVINTARGERKVLPPGNRWQAEL 194 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248 W L ++ + + + E + + P +I+ G + ++ Sbjct: 195 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 254 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 ++ + + H I ++ T Q++ L Sbjct: 255 LSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAHPLLA 314 Query: 301 DFLDIKREDVKRLGNVSNE-------MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + R+ + L + + GR + S +++++ + + + Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNELQDDILELRPLAESR 374 Query: 354 KCFS--------DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 + + + A + + E + L + ++ D + Sbjct: 375 ERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPDIDTYAP 434 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 A+FG E L +E +R ++ L ++ + V Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRMLLGYAV 554 Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 ++ E + L I + L + + ++S W + L Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQWGERLHALLHVF 614 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E L + S G + +D + + Sbjct: 615 FLAEDEGDEFLLMQ-LQDLRDSWLEVCETVGLHDPLPLTVVREAWLSGLDQGKLSQRFLA 673 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL 732 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N AS + +L + ++GQ Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLADAQQGQPARPGE 791 Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771 + L T++ + +P P S Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGETDAQSEPGLPPYQDAEALS 851 Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + P + + LK+ + + D + TL +E + Sbjct: 852 LHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 911 Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ LP + ++ + L+ +++ V Sbjct: 912 NAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQRW-PQLVEGALP 970 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914 + E L G+ R+ + + Sbjct: 971 VHFEHGQHRLEGWLGRVFQAEDQSLL 996 >gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] Length = 1145 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 87/842 (10%), Positives = 198/842 (23%), Gaps = 95/842 (11%) Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 LA + D + E A M D + + + + Sbjct: 314 LARLEDERDRLVALIERRKAAAAFDRSMALAAIGDAILSDYERMKSNRGLFDFDDLIERT 373 Query: 212 IALMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTVAN--------HPNGAIVL 259 L+ + + I++ + + A +++ +A Sbjct: 374 RRLLLRSSAGWVLYKLDSQIDHILVDEAQDTSAAQWDILAALAAEFCAGASARRAARSFF 433 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYS---THPQYSLAKLLDFLDIKREDVKRLGNV 316 D + + + + +L + + + ++ Sbjct: 434 AVGDEKQSIFSFQGAAPEKFDAMRRVFAGRFRDARMSFETVRLTRSFRSSPDVLAAVDDI 493 Query: 317 SNEMYGRSMVISKSFLPPDTSDMR------NTDILENKIPNIQKCFSDVALI-----EAD 365 R + + P + +I E + ++ + D L +A Sbjct: 494 FAHEGNRRGLSADPQEPAPQHEAWKADVRGRVEIWEPESADVAEAPPDWRLPLDYVNDAT 553 Query: 366 NEREEAISIAIALRMSLDE----------------NKKKSALITADRNLARRVKLELTRF 409 A IA + L L+ V L Sbjct: 554 PAARLARKIARRTKALLAPENGECVEDKGAIRAMRPGDVMILVRKRDAFFEAVIRALKAE 613 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN 469 G+ + + + LS + L +L A D + +A L+K PL + Sbjct: 614 GVAVAGADRLDLSGHIAVMDLVALGRAALLREDDLTLAVLLKSPLVGLDDDDLIALAPGR 673 Query: 470 ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ 529 + L + +L+ + + + Sbjct: 674 SGSLHDALAASPQPRHAEAAALIAHWSRLARTLAPFDFYS-----------------LAL 716 Query: 530 CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFS 589 + N +I ++ +L + L ++ E ++ Sbjct: 717 GAGGGREKLVARLGVEANDAIDEFLRLASAFEREQAQTLTGFLASVEALEL--SIKRDME 774 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL 649 + + + +A + ++ + P LF+LG + + G Sbjct: 775 QAGDAVRVMTVHAAKGLEAKVVFLPDTCGAPAGHHDPKLFVLGEED----EAALVWSTGK 830 Query: 650 NEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 + A+ L + +G R Sbjct: 831 DADPPAVARARETLREAARDEHRRLLYVALTRAEERLYIAGFHGPRGRAEDCWYDAIRDA 890 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 S + + + + +P P A P Sbjct: 891 LEPSCARAPDPFEATKEILVRGDAARGRVQATPAREERVVLPAYALQPAPRESAPAPPLR 950 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + + P A ++D +R G L H ++ L + Sbjct: 951 -PVTALAAADRIPVADEYA--------STTRQDGERLLIGRLTHALLQRLPDTPPERREA 1001 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + E +D R + + + + + + + Sbjct: 1002 AARKFL----------ELRAVSLDEAQRERVARAALAVIADRSLVALFGPRSAPEVEIVA 1051 Query: 890 AIES--IGIHLTGFADRIDLLKSGFVDITDYKTGD---NPKKETAQKLIDPQLSLEAAAL 944 + I +TG DR+ + D+KTG P + + QL++ AA Sbjct: 1052 RLMGSRGEIAVTGRIDRLAET-DSEAIVADFKTGAARNPPSRTQLR-----QLAVYRAAA 1105 Query: 945 KA 946 Sbjct: 1106 AQ 1107 >gi|293192899|ref|ZP_06609743.1| RecB family exonuclease [Actinomyces odontolyticus F0309] gi|292819955|gb|EFF78954.1| RecB family exonuclease [Actinomyces odontolyticus F0309] Length = 294 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 64/248 (25%), Gaps = 22/248 (8%) Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P S S K+ P + GT+ H ++ + Sbjct: 17 PSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETR-----AKALGTIVHAVLEK 71 Query: 819 LIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 L + TPE + W + + E Sbjct: 72 LFALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVDGYFAIE 131 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + I + G+ L GF DR+D G + + DYKTG P + Sbjct: 132 QPQW--IAPAALEQRVTTTTSG-GVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGPRYVDE 188 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + QL A L + + + LK I S + ++ Sbjct: 189 ALY-QLRFYALLLAR------TQVLPSRMQLVYLKAGQVITFDPEAGDIASFERHIDQLW 241 Query: 992 KNLIEIVT 999 ++ + Sbjct: 242 DSIARDIE 249 >gi|108762893|ref|YP_630835.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622] gi|108466773|gb|ABF91958.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622] Length = 1079 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 92/733 (12%), Positives = 171/733 (23%), Gaps = 124/733 (16%) Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITAD 395 R+ ++ + + A R+EA +A +R L E + Sbjct: 253 GRHLFSPRAPRDVLKDAVPSLRVWNAATARDEARLLARDVRRLLAEGVAPGDIAVAYREL 312 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 A + L G+ + + G PL + L + +A L+ A Sbjct: 313 GPEAGWLAESLGELGVPVRLPWGEPLGLAGPVRLALDLPLLVEDGFPVERMAELMGSRYA 372 Query: 456 K-------FGFPEKYLSRAKNALELVALRG-NKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 + A L A+RG + L +L T+K Sbjct: 373 PKLSRGGPDAPATLFAQAAVRDDRLGAVRGRGAYDVRLDGLARRLLALNGTRKAQDSTRV 432 Query: 508 WQSRLSEEDKELAVLLVDHILQ---CITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN- 563 +L E L V I + L + S L Sbjct: 433 DAVKLLRERCLLLVEACRRIPEEGTAAELLAAWWQVVERLGLVDSEGALAPREEGGLGAR 492 Query: 564 ----------------------------------VCLDEHRKLPNLWFEEEGKTLSSLFS 589 + + + Sbjct: 493 AADARARDDAAREALRLRVQGLTRMMKAVGGGPKMRRRTFGRWLRDAMADAHLPPRGPRG 552 Query: 590 KIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL-----------GTLESRL 638 +E + + D+ + + S L Sbjct: 553 AAVEVLDVAELPGRSFQDLFLAGLTEGRFPGRDAPSPLLADAERAALNKHLGRDVFRLTG 612 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFL----------SRVMQSDLNLKTAEKYIGQAAHDF 688 FD L E +A S Q + E+ A + Sbjct: 613 GEFDERAAWRLTEDRLLFASALAAAEANVSLSFAVESAGGQEQVPSAFLEEVRRLTALKW 672 Query: 689 EMANGTR----HLIYTRSLRENNIPTIA-SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 E + + + T S + A S+ R+ + + + R Sbjct: 673 EPRSLSPIPPLDEVLTESELRRCVALEALSQPKLRVTEPDAAAAVLRRRFAPEAWYAGAR 732 Query: 744 KLDYTTKQ------PHYKRPKP---------------FPPLEAQPRTYSFSEIKQLINDP 782 +L + +P P R S S + + N Sbjct: 733 ELSEVEMERLFFFGDPKVQPGPYSGSVDLDTQRESLRETFRFDITRPLSASALARFGNCG 792 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR---------INKNTPEINH 833 + + LK+ ++ D RGT +H ++ E+ + E+ Sbjct: 793 FQGFLSYGLKVAEPDVPGEEFDARGRGTFWHKVVEEVFAALKEKQLLGKAPEEVPDEVLD 852 Query: 834 LMKQIIDSHFEK--ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKIFVNIPAK- 888 + FE+ P + + ++ L E + + Sbjct: 853 AALKAAIKDFERVHHVGHPELWKLAHERARAMARRILVDERRGLPFDTMTPENFEFRFGP 912 Query: 889 -----------MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDP 935 + ++ G DR+D G V + DYK+G + D Sbjct: 913 AARDDKWSNVVLHAGEEPVYFEGTIDRLDKSG-GEVGVIDYKSGRLDKRSLKERLLTSDF 971 Query: 936 QLSLEAAALKAGS 948 QL L A + Sbjct: 972 QLPLYLYAARESG 984 >gi|154508756|ref|ZP_02044398.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC 17982] gi|153798390|gb|EDN80810.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC 17982] Length = 284 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 67/248 (27%), Gaps = 22/248 (8%) Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE 818 P S S K+ P + GT+ H ++ + Sbjct: 7 PSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETR-----AKALGTIVHAVLEK 61 Query: 819 LIKKRINKNTPEINH-------LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 L + TPE + W + + + E Sbjct: 62 LFALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVNGYFAIE 121 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + I + + S G+ L GF DR+D G + + DYKTG P + Sbjct: 122 QPQW--IAPAALEQRVT-TMTSGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGPRYVDE 178 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 + QL A L + + + LK I S + ++ Sbjct: 179 ALY-QLRFYALLLAR------TQVLPSRMQLVYLKAGQVITFDPKAGDIASFERHIDQLW 231 Query: 992 KNLIEIVT 999 ++ + Sbjct: 232 DSIARDIE 239 >gi|322831717|ref|YP_004211744.1| exodeoxyribonuclease V, subunit gamma [Rahnella sp. Y9602] gi|321166918|gb|ADW72617.1| exodeoxyribonuclease V, gamma subunit [Rahnella sp. Y9602] Length = 1152 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 100/920 (10%), Positives = 220/920 (23%), Gaps = 98/920 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT---GKKSTILPIIKSLG 82 L LV PL+P L + I V + Q L+ G IK Sbjct: 16 LRDVLVSWMAAHPLSP--LENEVILVQSNGINQWLKLALARDVTDGGCGIAAALDIKLPA 73 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + A +L P S R L RLI + L + + L Sbjct: 74 RFFWQVYRA--VLGKEQVPESSPFDRPLLTWRLIRLLPELLAEPVFAPLARF-LKDDGDM 130 Query: 143 ANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAA-DFLKIASKYWTERL 199 LA+ LAD+ D + W + + L + + L + W L Sbjct: 131 RKLHQLAQRLADLFDQYQVYRADWLEDWGNGLDVLRTSRKGSEPLPENLLWQPQLWRALL 190 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTGSIPATARLMSTVAN 251 ++ + + AL + + +++ G + + +++ + Sbjct: 191 ADVPENERNTSRAALHQRFLHYAQTIPEDQRPAGLPARLVVFGISSLPQQSLEVLAVLGR 250 Query: 252 HPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + + + H + I I + Q++ L + Sbjct: 251 WTHIFMCVHNPCEHDWSDIIADKDLLRAERIRQLRKPGMPQVIAEDELHQHAHPLLAAWG 310 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-----------------MRNTDILE 346 R+ + L N + + + + ++ Sbjct: 311 KQGRDYIGLLNEYDNHESYAAQLAPVIPRIDLFTSNGTDTLLHQLQEDILQLRPLAETID 370 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRV 402 + + + + E + L +L + + ++ D N Sbjct: 371 EWPAADVQHDDSLRFFITHSAQREVEVLHDRLLAALAADPTLKARDIIVMVPDINGYAPH 430 Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + I ++ P L SLL + L+ P Sbjct: 431 IQAVFGLMERSDPRYIPFTVADQGPRQNNPLLGALESLLELPQSRFAVSDLLDLLDVPSV 490 Query: 456 KFGFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + F + R + + S Sbjct: 491 RQRFGIEEEQLPLLHRWIRAANVRWGLHAEQRQSLELPLSPEQNSWFFGLQRMLLGYAVG 550 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN-- 563 + E E+ L I L +W + L Sbjct: 551 SGEAWKNIEPLDEIGGLDAALIGPLSHLLNCLDDTWRQLREPAPPQEWGRRLRHILSQYF 610 Query: 564 -VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 E + E L + S ++ + W+ + + + Sbjct: 611 SEDDGEDGFILVRLHGELEIWLEACESVDLQAELPLSVVRDHWLAQFDQ-----SGLTQP 665 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + R + F + L G+N+G +P+N F ++ + Sbjct: 666 FFGGAVTFATLMPMRAIPFRHVHLLGMNDGDYPRNRVPMDFDLMGRDYRPGDRSRREDDR 725 Query: 683 QAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFD----------- 729 + + L + R +N S + +L + Sbjct: 726 YL-FLEALLSARERLHISWVGRSIHDNTERPPSVLVAQLRDHLAAGWKAQSGEDLLHALT 784 Query: 730 ----------NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 + +G + + + Q + ++ + Sbjct: 785 TEHRLQPFNRDYFSQGSPLFSYAHEWRAGLEAEAAAVAAQPLQPVEQESALTLRQLSDFL 844 Query: 780 NDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 +DP + R+ L + + + N + R K E + + Sbjct: 845 SDPVRSFFRQRLNIYFELEDPGSEDQEPFDINALENWRLQDELIRAQKWALEAGVSRQDV 904 Query: 839 IDSHFEKENLPPHIDIIWRH 858 + E+ + Sbjct: 905 LRQQLERIERRGELAPGEFA 924 >gi|319775123|ref|YP_004137611.1| exonuclease V (RecBCD complex) subunit gamma [Haemophilus influenzae F3047] gi|317449714|emb|CBY85921.1| exonuclease V (RecBCD complex), gamma chain [Haemophilus influenzae F3047] Length = 1085 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 89/740 (12%), Positives = 181/740 (24%), Gaps = 98/740 (13%) Query: 56 AIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 Q L+ E + TG + + +P + + A L + L P L Sbjct: 1 MAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNLPATALENPFDKDSMTWRL 54 Query: 113 ARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW------ 166 RLI I+ K + L S L+ +AD+ D +W Sbjct: 55 MRLIPIFLEK--ENFSPLRNYLSSSPHSEQYKLYQLSSKIADLFDQYLVYRPEWIFAWEK 112 Query: 167 -------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE-----LNASSPVGYQIAL 214 + + + + K + W +V+ A+ Sbjct: 113 GEDEQITDQIQKQQPNLNATLFAQIQGNTKWQGELWRALVVDVKSDVNEATHRAALHNQF 172 Query: 215 MRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 + A+ K I I G A ++ +++ + + I + Sbjct: 173 LALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDIHLFFNNPCQEYWGDISDL 232 Query: 274 ITEKSTNITSSNTTYSTHPQYSLA----------------------------KLLDFLDI 305 + + + Q + + Sbjct: 233 LLDYLRSRKRYQLNKQDENQPLFSEDQLSQLENAQFDVTYQKENLQLGNLLLAAWGKMGR 292 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 Y + LENK NI K + L Sbjct: 293 DFLYTLVRDEEHIPTYPVNAYQEIESNSLLGQLQSQILHLENKPLNIAKNDRTLTLHSCH 352 Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL------TRFGINIDI 415 + E + L +++ K ++ AD N + I + Sbjct: 353 SAMREVEVLHDYLLDLFNQDPSLTPKDVVVMMADINQYTPYIQAVFGQKNGDAPQIPFSL 412 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----------EKYLS 465 S + S +LL + L+ P + F E Sbjct: 413 SDNKLSESDALVSSYLTLLGLKESNFSAEDVLALLDIPAMRERFNISLADLPLVREWVAD 472 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 G + L+ ++L ++ S K + Sbjct: 473 SGIRVGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDSLGLNSSYGLKGELAGNLS 532 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 H ++ L + SI W ++ L + + +++ + Sbjct: 533 HFFTALSALHETLQQAH------SIEKWQEILTALLSDFFVRNEDTSDMIFYIQ------ 580 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEKSSTLFILGTLESRLLNFD 642 +++ E + ++I +I + + + L R + F Sbjct: 581 EKINELAEHLKTLHFTEKLQAEVIADVITMKLEDAPNSLKFLAGKVNFCTLLPMRSVPFK 640 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTR 701 + L G+N+ +P+ N F + E R + Sbjct: 641 VVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRY--LFLEALLAARDYCYISY 698 Query: 702 SLRE--NNIPTIASRWLQRL 719 R +N P S + +L Sbjct: 699 VGRSITDNQPKEPSVLVSQL 718 >gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length = 1191 Score = 98.8 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 87/817 (10%), Positives = 201/817 (24%), Gaps = 74/817 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 116 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A K+ YP S ++ + L Sbjct: 117 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 175 Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202 L++ + T E E L L K A L ++ + Sbjct: 176 ELSEHLVRPGTLEAYDTELLRELAAAKLSNADLRKIPEAAEARRSLLGLTERYRTAKRSR 235 Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----- 252 + AL R E +++ +++ + A L+S + Sbjct: 236 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGSGGTGS 295 Query: 253 ----------PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 G V D W + + + + ++ + L Sbjct: 296 GGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRYSL--- 352 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 S ++ + + + + + + V Sbjct: 353 --------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDGMVRCA 398 Query: 363 EADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 EE +A +L + + A++ ++ L I +++ Sbjct: 399 LLSTHTEEIDWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEVVGLAG 458 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 L + L ++ + ++ L+ P + G + L + L + Sbjct: 459 LLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRAD 518 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTN 540 ++ L V + + ++ + + + L + Sbjct: 519 DADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRD 578 Query: 541 KNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA 600 + + + ++ T V L + E + ++ Sbjct: 579 LRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASL 638 Query: 601 NAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 A + +T+ +L +S+ L +D + + GL G +P ++ Sbjct: 639 LAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSR 698 Query: 661 NPF------LSRVMQSDLNLKTAEK----------YIGQAAHDFEMANGTRHLIYTRSLR 704 + + L ++ D A H ++ +TR Sbjct: 699 DAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRLGYVTFTRPRS 758 Query: 705 ENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 S+ R +++ W + + P Sbjct: 759 LLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADL 818 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 + + + + A R ++ D Sbjct: 819 AWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEP 855 Score = 63.4 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 81/770 (10%), Positives = 183/770 (23%), Gaps = 52/770 (6%) Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 IP ++ + + P A ++ + ++ T A+ Sbjct: 449 IPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRAR 508 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---NIQKC 355 LL + +D ++ + G S + + D ++ +P + Sbjct: 509 LLVHRAGRADDADADRRLAEAVEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVR 568 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 F+ +A D R A + L L + L + + LA R + L F Sbjct: 569 FARLARELRDLRRSLADPLMDVLHRILATTGLEVELSASPQALAARRRETLANFLDIAAR 628 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 A +L + + A ++ A+ K L A+ + Sbjct: 629 FASFDGEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLV 688 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + + + + + + + Sbjct: 689 TGQFPSGQSRDAWTAQAKVLPHALRGDAATLPALDSFDAKGIKAFKEEMKEHQHTEELRL 748 Query: 536 TYKTNKNSTCGNLSISDW-------TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 Y T L W T+ L+ + + + Sbjct: 749 GYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEEN 808 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + E + + D + R + + + D + Sbjct: 809 PALAERDADLAWPLPLDADALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHE 868 Query: 649 LNEGVWP---KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 + P ++ + + H Sbjct: 869 PWDEEPPLDEPPADEDWDWDALPTERPAEPVPDMAPEPVRERAPAPEAAPHTEPAPDPAS 928 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDN------LKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 P I + + + + W R LD + +R + Sbjct: 929 EPTPHIPAARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDLDSLAGE--LRRARA 986 Query: 760 FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL 819 P S +++ +L DP A A+ + + P RGT FH + Sbjct: 987 TVREVVIPAALSATQLLRLAEDPDAF-AQELARPMPRPPQ----PAARRGTRFHAWVESR 1041 Query: 820 IKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 ++ D+ E + E + Sbjct: 1042 YEELPLPMLGPDELPGGDESDAEIADERDLAELKE--------------AFERTAYARRT 1087 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 V P ++ + + G D + +I D+KT + + QL++ Sbjct: 1088 PYRVETPFQITLAGR--VIRGRIDAVYRTGD-TYEIVDWKTTRHRTADP------LQLAV 1138 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 A +D ++ ++ + + L ++ Sbjct: 1139 YRLAWAELHDLPLDAVT---ATFLYVRTGETVHPQGLPGRADLERILLDE 1185 >gi|251789628|ref|YP_003004349.1| exodeoxyribonuclease V subunit gamma [Dickeya zeae Ech1591] gi|247538249|gb|ACT06870.1| exodeoxyribonuclease V, gamma subunit [Dickeya zeae Ech1591] Length = 1162 Score = 98.8 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 90/921 (9%), Positives = 223/921 (24%), Gaps = 96/921 (10%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L + I V + Q L+ + + + + A + + P Sbjct: 37 LENELILVQSNGIGQWLKLALARDPREGGCGVAAALDIQLPSRFFWQAYRAVLGHDQVPE 96 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 ++ L +L L + L LA+ LAD+ D + Sbjct: 97 TSPFDKSLLVWRLLRLLPDLLTQPEFAALARFLHQDTDLRKHYQLAERLADLFDQYQVYR 156 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAEA 219 W + + L ++ W L ++ + + AL + Sbjct: 157 ADWLADWTAGRDLLTSH-RRGVEPLPEEQRWQPLLWRALLEDIGEALSGTSRAALHQRFL 215 Query: 220 EHLMK--------GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI- 270 + L + G +++ G + L++ + + + H I Sbjct: 216 DELKRRGDSERPAGLPSRVVVFGISSLSQQALELLAAIGRWTQVFMCVHNPCRHYWGDII 275 Query: 271 -------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 ++ Q++ L + R+ + L Sbjct: 276 ADKDLLRAERARQRRKPGMPDVLALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQHEQYE 335 Query: 324 SMVISKSFLPPDTSD-----------------MRNTDILENKIPNIQKCFSDVALIEADN 366 ++V + + + + A + Sbjct: 336 ALVQPLILRTDMFNGNDNDSLLHQLQDDILELRPLAESSARWPAVDPQRDRSIRFHLAHS 395 Query: 367 EREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDI 415 + E + L + + ++ D N + I + Sbjct: 396 PQREVEVLHDQLLAAFAADPTLRPRDVIVMVPDINGYAPHIQAVFGLVDRQDPRYIPFSV 455 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALEL 473 + L + L LL+ + L++ P + F +++L + + Sbjct: 456 ADRGSRQNNLLLAALEKLLHLPQSRVAVSDVLDLLEVPAVRRRFAIDDEHLPLLQRWIRA 515 Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 +R ++ L + + V + E + L Sbjct: 516 ANVRWGLHARQRQSLDLPDAPEQNSWFFGLRRMLLGYAVGAGSAWRDIEPLDEVGGLDAV 575 Query: 527 ILQCITPLVTYKT-NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + + L+ + C + S W + L + + + L Sbjct: 576 LAGQLALLLDRLDSSWQQLCQPATPSQWGERLRALLSTFFAADEGEDG-FMLLQLDDGLQ 634 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 S + L + ++ + T+ + R + F + Sbjct: 635 SWLEACESVALDQALPLSVVREHWLGLFEQSSLTQPF-FAGTVIFATLMPMRAIPFRHVC 693 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704 L G+N+G +P++ F ++ + + + + R Sbjct: 694 LLGMNDGDYPRSRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSAREQFYISWVGRS 752 Query: 705 -ENNIPTIASRWLQRLLVLG---------------------GTDFFDNLKKRGQCYLDWT 742 +N S + +L F + + Sbjct: 753 IHDNSERPPSVLVAQLRDHLSNGWRAVDGQDVLPALTVEHRLQPFSADYFTADSPLFSYA 812 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795 R+ + Q + ++ I DP + R L + Sbjct: 813 REWRAGLVAQDTPSTEAALSEHQQDGVLTLRQLADFIRDPVRSFFRLRLNVWFELEDPTS 872 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRI--NKNTPEINHLMKQIIDSHFEKENLPPHID 853 D + L H +I E + +++I + Sbjct: 873 QDQEPFAIDALENWRLQHELIQEQKAALHRQTPREQALAAQLERIARR--GELAPGGFTS 930 Query: 854 IIWRHLFHKISHSFLEHEEKI 874 ++ + L ++ F + ++ Sbjct: 931 VLAQELAEPMADLFTRYAQEQ 951 >gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] Length = 764 Score = 98.8 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 94/779 (12%), Positives = 217/779 (27%), Gaps = 95/779 (12%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + + + P + T +A E++ + G ++ + + + Sbjct: 35 TAVLTRRIAYLLQERGVAPW---EILAITFTNKAAAEMKERVGALIGPQAERM-WVATFH 90 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 V L V + + D + L + + Sbjct: 91 SVCVRILRQQAQL-------VPGLNTNFTIYD---------GDDSRRLLGMIAKEMNLDL 134 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A+ LA+ I ++ E E+ A + + A + RL E Sbjct: 135 KKFS--ARTLANGISNLKNELIGPEEAAANAQTTKNPFEVTVAA----VYTQYQRRLREG 188 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 NA ++ +H + +++ + A L+ T+ + A Sbjct: 189 NAVDFDDLIGEVVGLFKQHPQVVEYYRRRFRHVLVDEYQDTNHAQYELIHTLVGNGPDAP 248 Query: 258 VLPG-LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 L D + T ++ +P + L + + V Sbjct: 249 ELAVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTILLEQNYRSTQNILAAANAV 303 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + GR K+ + ADNE +EA ++ Sbjct: 304 IAQNAGRRPK---------------------KLWTDTGTGEKIVGYVADNEHDEARFVST 342 Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + D A++ N +R ++ R G+ + G + + L Sbjct: 343 EIDELTDRGVQYGDIAVMYRTNNSSRALEDIFIRAGVPYKVVGGTRFYERREIRDIVAYL 402 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + +D +++ ++ P G + + ++ ++ +L Sbjct: 403 RILDNPDDSVSMRRIINVPKRAIGDKAQAMVALHADNHGMSFGRALIDGAAGEIPTLGPR 462 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 + E + + D L T G + + + Sbjct: 463 AKNAIGGFVEMIQGLRDELPELRNEVTGMPD--------LGALVTRILDVTGYKAELEAS 514 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L+E + + E ++ E+G + +++ ++ + D Sbjct: 515 NDPQDGARLDNLNELVSVAREFSSEAANQMAYGEEWDPESGEAQPGSLQAFLERVSLVAD 574 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + + E + ++ ++ L F + + G +G +P A + L Sbjct: 575 ADQI--PDEGQGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRAMGDPAELAEERRLAY 632 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + + A TRS + + ASR+L + Sbjct: 633 VGITR--ARERLYLTRA-------LTRSSWGSPMNNPASRFLAEVP-------------- 669 Query: 735 GQCYLDWTR-KLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 + LDW R + +Y+ + P P + ++ L +A+ L Sbjct: 670 -EDLLDWRRVEPEYSFSNEAWGSPAPSRRAMPRRERTPVNKDLHLAKGDRVNHAKYGLG 727 >gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 787 Score = 98.8 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 83/741 (11%), Positives = 196/741 (26%), Gaps = 116/741 (15%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 LV + + + T +A +E+R E+ G + + I + + Sbjct: 34 RVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMRERLRELLGMAANAM-WIGTFHATCVK 92 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + R + R I + + Sbjct: 93 LLRIHGEHI--------GLSRDFTIFDSDDQKRLLNALIKEHGLEDQVS----------- 133 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 AK LA ID ++ ++ D L+ + + + A Sbjct: 134 -AKTLAVQIDRCKSRDEDP----------MDRHGGWGDDLLREIYPLYQAGMAQQGAVDF 182 Query: 208 VGYQIALMRAEAEHLMKG----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 + ++ + + +++ + RL+ A+ V+ D Sbjct: 183 NDLLLKVLELARDPTVGPVLSARFDHVLVDEFQDTNRVQFRLVRHFADVSRNLTVV--GD 240 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 W ++ +P + KL Sbjct: 241 DDQSIYSWRGAEPRNLLEFK-----RDYPDAEVVKL---------------------EQN 274 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---M 380 S + +N + E + + ++REEA IA A+R Sbjct: 275 YRSTSVILDAANAVIAKNRNRHEKALWTASDGGESILWEPCPSDREEATFIARAIRGLVS 334 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + + + A++ R +R+++ +L RF I+ +I + + S L + + Sbjct: 335 AENRDFSDMAILYRTRAQSRQLEEQLRRFDIHYEIIGDVSFFQRREVKDIISYLRLLVQP 394 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 N +A +V P + ++R+ Sbjct: 395 NADLAFERIVNVP-------------------------------ARGIGKTTVERVRDYA 423 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 +P +++ + D L + L ++ S+++ TV Sbjct: 424 RRAELPLFEAARACADGSGGSLAARARNKLRAFLDIVDGLRDVMAAGASVAEIVIQTVER 483 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + + + + A+ +E+ + + K Sbjct: 484 SGYSAALTKEGTLEAEERLKNLSELVSWGSSFDEEEGEDASLVEF--LANVALQSSGDKA 541 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + ++ ++ L F + L GL EG++P ++ + + Sbjct: 542 ESGDRGKVKMMTIHAAKGLEFPVVFLCGLEEGLFPSLRERD-----------DQNDGDTL 590 Query: 681 IGQAAHDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLL-VLGGTDFFDNLKKR 734 + + R L+ T +++ SR+L + Sbjct: 591 EEEYRLAYVAITRARERLVLTYAMQRMIWGETRSQRPSRFLDSIPDDCLAVRAEPPPPAT 650 Query: 735 GQCYLDWTRKLDYTTKQPHYK 755 Y D+ L + + Sbjct: 651 TTHYDDYGSTLRRRRRPAADE 671 >gi|238918748|ref|YP_002932262.1| exonuclease V subunit gamma [Edwardsiella ictaluri 93-146] gi|238868316|gb|ACR68027.1| exodeoxyribonuclease V, gamma subunit, putative [Edwardsiella ictaluri 93-146] Length = 1128 Score = 98.8 bits (244), Expect = 5e-18, Method: Composition-based stats. Identities = 80/748 (10%), Positives = 182/748 (24%), Gaps = 75/748 (10%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 A I V + Q L+ E G + I L +L Sbjct: 29 PFAREVILVQSPGMSQWLQMELARSFGIAANID---FPLPATFIWDLFTRVLPDIPQRSA 85 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 S +L L+ + ++ LS LA +AD+ D Sbjct: 86 FSKDAMTWKLMWLLPQFLDRPAFAPLA----HYLSDDTDRRKHFQLAARIADLYDQYLVY 141 Query: 163 EKKW-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 +W + + L +A + +TE+L + ++A Sbjct: 142 RPEWLQRWEQGGLIEGLDSAQQWQAPLWVALRDYTEQLGQPQW-HRANLYQRFIQALKVS 200 Query: 222 LMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I G + P + + H + ++ + I + Sbjct: 201 DSAPPGLPRRVFICGISALPPVYLEALRALGEHIDVHLMFTNPCRYYWGDIQDYAFLARL 260 Query: 280 NITSSNTTY-------------------------STHPQYSLAKLLDFLDIKREDVKRLG 314 Q LL D L Sbjct: 261 QSRRRRDYLLAQRSLGDNQSALFRVPEQAAALFSEEGEQALSNPLLASWGKLGRDHMYLL 320 Query: 315 NVSNEMYGR--------------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 + + + T + + ++ Sbjct: 321 AQHGPQEVSAFVDLAQDTLLQRIQRDMLELEDHACIAAAAQTLQESRQKRRLASDDRSIS 380 Query: 361 LIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGI 411 + + + E + +L + + ++ AD + + + Sbjct: 381 VHVCHSPQREVEVLHDSLLDMFSADATLSARDVIVMVADIDSYAPFIQAVFGNTPAARYL 440 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKN 469 IS L +LL+ + + L++ P +F + + ++ Sbjct: 441 PFAISDRSARQLHPVVQALLALLDLPHSRFNAEQVLALLEVPALAARFDIDDDGIRLLRH 500 Query: 470 ALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKEL-AV 521 +E +R + + DL + H + + Sbjct: 501 WVEESGIRWGLDDDAVRDLALPATGQHTWQFGLTRMLLGYAMDSHSGEWQGVLPYDESSG 560 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + Q L + + +++ W L L + Sbjct: 561 TIAELAGQLAQFLAALREWRQRLGQMQTLAQWQPLCWALLDDF--FVTDADSEAVCALIE 618 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + L + + + D +T +D + + + + + R + F Sbjct: 619 QQWLKLVEEGLASAYPETLPITVLRDELTARLDNQRISQRFLAGP-INFCTLMPMRSIPF 677 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + L G+N+GV+P+ A F ++ ++ + + + L + Sbjct: 678 KVVCLLGMNDGVYPRTLAPLGFDLMAGKAQRGDRSRRDDDRYL-FLEALLSAQQRLYISY 736 Query: 702 SLRE--NNIPTIASRWLQRLLVLGGTDF 727 R +N S + LL Sbjct: 737 IGRSVQDNSARYPSVLVSELLEYIAQSH 764 >gi|145300877|ref|YP_001143718.1| exodeoxyribonuclease V, gamma subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853649|gb|ABO91970.1| exodeoxyribonuclease V, gamma subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1134 Score = 98.5 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 102/885 (11%), Positives = 224/885 (25%), Gaps = 80/885 (9%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL LV + R PL + V + Q L+ E + G + I Sbjct: 11 DLLKELLVNHIRQAPLA-HPFEQEQVLVQSPGMAQWLKLELAKAFGIAANI--EFPLPAS 67 Query: 84 VVEEKFTADLLLSYNLNP----PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 + E FT L +P +S + A L L + + P P Sbjct: 68 FIWEMFTRVLADVPRQSPYNKGAMSWQLMTILPALLDRPAFAPLAAYLGGGDEQDPAGDP 127 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADF--LKIASKYWTE 197 L + +AD+ D W G A + W E Sbjct: 128 EQVR-LWQLCQKVADLFDQYLVYRPDWIARWEEGEGLVGTESQDLAGVSGQDWQPELWRE 186 Query: 198 RLVELNASSP-VGYQIALMRAEAEHLMKGT------KGPIIIAGSTGSIPATARLMSTVA 250 + A SP ++ L L + + + G + P + + Sbjct: 187 LVARTLALSPSGYHRANLYEEFIHELQRTRDLPGKLPQRVFVFGISALPPRYVEALLALG 246 Query: 251 NHP--NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 + P + + + + + T T Q LL + Sbjct: 247 SRPEVEVHLFVTNPCRYYWGDLLDRKTLARLENKLKPGTDLDTLQGPANPLLASMGKLGR 306 Query: 309 DVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 D + S + + + + Sbjct: 307 DYLHQLMELEVSQIEAFVDIDEVDASGNVRLLRAIQKDVLELGSRGEGQFDLDSSYHKSP 366 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL- 406 I + + E + L + + K ++ D N + Sbjct: 367 IDPADGSLQIHACHGPMRELEVLHDRLLALFERDPSLTPKDVVVMMPDVNSYGPYIQAVF 426 Query: 407 -TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKY 463 R I +S + +LL+ + +++ P L +F + Sbjct: 427 GARGQIPFAVSDRAASQESPLLQSFLALLHLPSARLGAGELLAILEVPAVLRRFELDDDE 486 Query: 464 LSRAKNALELVALRGNKN--------------SYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 ++ + ++ +R + + + L+ ++L + Sbjct: 487 FNQLRVWVQETGIRWGLDDAYPERFELPRMSGNSWLFGLRRMLLGFAMGDGEPVAGMSFC 546 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKN----------STCGNLSISDWTKLTVT 559 + + ++ + + S+ +W+ + Sbjct: 547 ADHGAGQQGAVASILPYAEIEGQQGLALGKLAWFVDSLAEFLPRLQREQSLPEWSACLLD 606 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L L + + L + L+ +++ E A D + +++ GE+ Sbjct: 607 LLDRFYLADEEEERLL--QLIRSQLADWQTQLGEARFDQPITADLLQDYLGKVL-GESRS 663 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + + R + F + L G+N+GV+P+ A F +M + Sbjct: 664 SQRFLAGQVNFCTLMPMRSIPFKQVCLLGMNDGVYPRTLAPMGF--DLMAVASRRGDRSR 721 Query: 680 YIGQAAHDFEMANGTRH-LIYTRSL--RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 E + L + ++N + S L L+ F +R Sbjct: 722 RDDDRYLFLEALLSAQQGLYISYQGFSAQDNSDKVPSVLLAELIDYVRQGFVLAGDERLD 781 Query: 737 CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILKLDF 795 R L + + +++ +P A Sbjct: 782 DEASGERLLKHLVVEHPLTPYSRSYFYPEAESRLFTYAADWLPALNPVRGAANFQSGELP 841 Query: 796 IPHFKKDPDRTDRGTLF---HNIITELIKKRINKNTPEINHLMKQ 837 +P + L + +R+ ++ Sbjct: 842 LPPEWGREQGLELAELLRFYRQPAKYFLNRRLKVWFELNEANIED 886 >gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 805 Score = 98.5 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 87/724 (12%), Positives = 193/724 (26%), Gaps = 86/724 (11%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L + R + P ++ T +A E+R + G + + + + Sbjct: 55 VLTRRIAYLMRVRGVQPQ---NILAITFTNKAAAEMRERVSSLVGPVAQRM-WVSTFHST 110 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 L V + + + L I KD + P Sbjct: 111 CVRILREQAQL-------VPGLNTNFTIYDSDDS-KRLLSMISKDFSLDIKKFTPRL--- 159 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 LA I ++ E + A + A + +RL NA Sbjct: 160 -------LATGISNLKNELIDADQACADAESTKNPYETTIAS----VFAEYQKRLRASNA 208 Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMST-VANHPNGAIV 258 +R EH + ++I + A L+ V + P+ + + Sbjct: 209 VDFDDLIGETVRIFREHPPVTEYYRRRFRHVLIDEYQDTNHAQYALIHELVGSGPDASEL 268 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + T ++ +P L + + +V Sbjct: 269 CVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNAETILLEQNYRSTQTILNAANSVIA 323 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 + R E K+ + ADNE +EA IA + Sbjct: 324 QNENRR---------------------EKKLWTALGSGDPIVGYVADNEHDEARFIANEV 362 Query: 379 RMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 D+ A++ N +R V+ R GI + G + + L Sbjct: 363 DALADKGVAYSDIAVMYRTNNSSRAVEDVFMRTGIPYKVVGGTRFYERKEIRDIIAYLRL 422 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD---LKSLVL 493 I +D +++ ++ P G V L + Sbjct: 423 IDNPDDAVSLRRIINTPRRGIGDKAVAFLSLHADNHNVGFHKALLDATEDKVSMLGARGR 482 Query: 494 DRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + + + ++ + + D + + VT + + Sbjct: 483 NAVTGFVDMMKGIREEAANKVNEVTGMPDIGDMVSYILD--VTGYKAELEKSNDPQDGAR 540 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + + +E G + + G + + +++ ++ + Sbjct: 541 LDNLNELVSVAREFSSEAANQVAYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSLVA 600 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLN 673 D + + + + ++ ++ L F + L G +G +P A Sbjct: 601 DADQI--PDNEQGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHLRA-------------- 644 Query: 674 LKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTDFF 728 L ++ + + R L +R++ N + SR+L + Sbjct: 645 LGEPKELAEERRLAYVGITRARRTLYLSRAMLRSSWGNPVTNPPSRFLSEIPDELMDWRR 704 Query: 729 DNLK 732 + + Sbjct: 705 EEPE 708 >gi|227488933|ref|ZP_03919249.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51867] gi|227091117|gb|EEI26429.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51867] Length = 280 Score = 98.5 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 28/266 (10%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + Q P + I K+ + D +GTL H ++ L+ + T Sbjct: 20 ALSPSRVSQYKKCPLSFRFGAIDKIP-----TETKDYQLKGTLVHAVLEHLMGLPPEERT 74 Query: 829 -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 P L+ + + E +P H ++ + + + E ++ Sbjct: 75 YPTAVKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGLETDR-- 132 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 + + + L GF DR+D+ G V I DYKTG P A + Q+ A Sbjct: 133 MEEFVSTTLRD-DVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDAMA-QMKFYAL 190 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 + + I + L Y+ + + + + +E + + ++ EI Sbjct: 191 -VWWCLYGVIPAQ--LRLMYLAVGDDLTLSP-----DEATLEEFAAELVQTWDEIKHKGA 242 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 GE F K +Y + Sbjct: 243 RGE--FEPRTS---KLCGWCDYQSIC 263 >gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] Length = 898 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 91/728 (12%), Positives = 191/728 (26%), Gaps = 76/728 (10%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E+R I++ G +T + + + Sbjct: 125 TAVLTRRIAYLLRMRGVAP---GQILAITFTNKAAAEMRDRVIDLVGPTATRM-WVATFH 180 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 L + + + + L I KDL + P Sbjct: 181 SACVRILREQAHL-------LPGLNTNFTIYDADDS-KRLLGMIAKDLQINAQKFPPRL- 231 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 LA I ++TE + + + + RL Sbjct: 232 ---------LAAAISALKTELTDPDAASDEAAATRNPF----DRTIAEVYTEYQRRLRAA 278 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH-PNGA 256 NA +R H + ++I + A L+ST+ P+ + Sbjct: 279 NALDFDDLIGETVRVFTTHPEIAAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGTGPDAS 338 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + D + T ++ +PQ L + + V Sbjct: 339 ELSVVGDSDQSIYAFRGATIRNIEEFE-----RDYPQARTILLEQNYRSTQNILSAANAV 393 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + +GR E K+ + + ADNE +EA IA Sbjct: 394 ISHNHGRR---------------------EKKLWTDHGAGAKITGYVADNEHDEARFIAT 432 Query: 377 ALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLL 434 + D A++ N +R ++ R GI + G L + L Sbjct: 433 EIDALFDMGVGYGDIAVMYRTNNSSRAIEEVFIRTGIPYKVVGGTRFYERKEIRDLIAYL 492 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + D +++ ++ P G ++ + +L Sbjct: 493 RVLDNPTDEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTR 552 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV-----TYKTNKNSTCGNLS 549 + + E L D + L Sbjct: 553 AKNAIAAFLELMDGLRVDAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGAR 612 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + + +L + + G + G + +++ + Sbjct: 613 LDNLNELVSVAREFSSEAANLMAYAAMGAGTGAGVEGNDPAEPMVGEPQPGSIHAFLEKV 672 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + + D + + + ++ + ++ ++ L F + L G +G +P A + Sbjct: 673 SLVADSDQL--PDDSTNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPHLRALGDPQELAEE 730 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 L + M R+ N + ASR+L+ + + Sbjct: 731 RRLAYVGITRARETLYLTRAML---------RASWGNAVANPASRFLEDIPEKLMYWRRE 781 Query: 730 NLKKRGQC 737 G Sbjct: 782 EPGAGGWD 789 >gi|226306669|ref|YP_002766629.1| hypothetical protein RER_31820 [Rhodococcus erythropolis PR4] gi|226185786|dbj|BAH33890.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 291 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 76/282 (26%), Gaps = 24/282 (8%) Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 S S P R + ++ P RGT Sbjct: 2 PTPTPTGATSQERPRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTR-----AQVRGT 56 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH--IDIIWRHLFHKISHSFL 868 + H + L P+ + + E+ I F + Sbjct: 57 VVHAALEALFALPTGHRVPDRAAELVRPAWERVSAESPEAADLIPEDELDAFLGEVGKLV 116 Query: 869 E--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 + + + + + + +E G+ L GF DRID+ +G V + DYKTG P + Sbjct: 117 ATYYTLEDPTRFDAEACEVYVETELE-NGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP-R 174 Query: 927 ETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL 986 E + Q+ A L A L I L + + + + Sbjct: 175 EFTESKALFQMKFYALVLLR-----TRGIVPAQLRLIYLASGSILTYAPDHDELIRFERT 229 Query: 987 SEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 K +L G + + ++ L Sbjct: 230 LSAIWK------AILAAGATG-DFRPKPGK-LCDWCDHKSLC 263 >gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 846 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 89/735 (12%), Positives = 197/735 (26%), Gaps = 89/735 (12%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E+R + G ++ + + + Sbjct: 92 TAVLTRRIAYLMRIRGVQP---GQILAITFTNKAAAEMRERVAHLVGPIASRM-WVSTFH 147 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 E A+L+ + D + Sbjct: 148 STCVRILR--------------------EQAQLVAGLNSNFTIYDSDDSKRLLAMISKDM 187 Query: 143 -ANAIWLAKNLADI-IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV 200 + L I ++ E A + A + RL Sbjct: 188 NLDIKKFTPRLLGAGISNLKNELISPATAVAEAESTKNPYETTVAA----VYVEYQRRLR 243 Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + NA +R EH + ++I + A L+ + Sbjct: 244 QANAVDFDDLIGETVRIFKEHPQVTEYYRRRFRHVLIDEYQDTNHAQYVLIHELVGTGET 303 Query: 256 A-IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG 314 A + D + T ++ +P + L + + Sbjct: 304 ASELCVVGDSDQSIYAFRGATIRNIEEFE-----RDYPNATTVLLEQNYRSTQTILNAAN 358 Query: 315 NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI 374 +V ++ R + K+ + ADNE +EA I Sbjct: 359 SVISQNENRR---------------------KKKLWTALGSGDPITGYVADNEHDEARFI 397 Query: 375 AIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 A + D+ + A++ N +R V+ R GI + G + + Sbjct: 398 AQEIDALADKGIDYSDMAIMYRTNNSSRAVEDVFMRSGIPYKVVGGTRFYERKEIRDVIA 457 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 L + D +++ ++ P G + + V+L+ + L+ Sbjct: 458 YLRLLDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVS-LL 516 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 R + R S + + + I I ++ K + D Sbjct: 517 GARGRNAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQD 576 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS-SLFSKIIETGSCIKANAIEWIDIITR 611 +L L + + + S + G + +++ ++ Sbjct: 577 GARL--DNLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSL 634 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + D + + + + ++ ++ L F + L G +G +P A Sbjct: 635 VADADQI--PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPHLRA------------ 680 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSL----RENNIPTIASRWLQRLLVLGGTD 726 L ++ + + R L TR++ N + ASR+L + Sbjct: 681 --LGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASRFLTEIPQELLDW 738 Query: 727 FFDNLKKRGQCYLDW 741 + + + Sbjct: 739 RREEPESSFDAWGQP 753 >gi|139438970|ref|ZP_01772430.1| Hypothetical protein COLAER_01436 [Collinsella aerofaciens ATCC 25986] gi|133775681|gb|EBA39501.1| Hypothetical protein COLAER_01436 [Collinsella aerofaciens ATCC 25986] Length = 1032 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 111/1059 (10%), Positives = 261/1059 (24%), Gaps = 140/1059 (13%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 A L ++ + G+ + P L + A L + P S ++ L EL Sbjct: 17 AEAALLADLVARHGRAVMLAPSFAELDVCRHDAAVAGASLGVDYKTPASWLRSLWELMGD 76 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 + + + + L+ + + + ++ ++ + + + Sbjct: 77 GRSFVDNMQRQM--LFSDMIARRDDADLQPLSRSQGTVRMLARMARDVLPGVAGTGAERC 134 Query: 176 KYG----MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPII 231 + A + + L + P + A++L + Sbjct: 135 RGDVCQPDPKSDAEARVFELLSSYASGLDRRDMVEPCEAADLMAEVLADNLPA-CARAVC 193 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + G T L+S VAN+ +VL Sbjct: 194 VRGITSFTHGLLELLSAVANNGGEVVVLL------------------------------- 222 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 A + + L + L + G + + S + + Sbjct: 223 -AREQAAMREELAAAFDARGVLFEAAPLGEGAAAPQTASKSAAQPTFVEVAGPHARAHAY 281 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGI 411 + V E A + A +R + L + L I Sbjct: 282 VDAIDELVKTCEDAAVDGGATASADPVR--------VLVVSARAPQLFGELAARLAARHI 333 Query: 412 NIDISAGIPLSTTLHSSILTSLLNAIFK-------------LNDFMAIATLVKHPLAKFG 458 + + S ++ T+L N I + + + PL+ Sbjct: 334 AAETTEFTAFSQSIAGRQFTALANLIERMKAADEGTASKTEWWPAPELTDWIYSPLSG-- 391 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + A+ + + L K + + L V ++ + +W + + Sbjct: 392 ---ADAASARTFDKNMRLSRGKTTTAVKSLLQSVQGQVRGTRKAASDDNWFKNVPCVVSD 448 Query: 519 LAVLLVDH---------ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 + L + + + + + L N Sbjct: 449 VFQALWRDKPVTALKAMLAVAEALPDRALGGLDGQARRQVETALLRHVIDILMNDARTLD 508 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + + + + + + LF Sbjct: 509 VSQAATVPVLDDVRTKVDKRSTAYDYETYEVDRAPRAQVRFASLTDAAALRPDSYDAVLF 568 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA--HD 687 L+S L+ + L L + P ++ ++ A + A HD Sbjct: 569 ADVDLDSYPLSHEEGPLATLTAELGRSGVTLEPAALLRVRFGRAMQAARGPVALARVTHD 628 Query: 688 FEMANGTRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + ++T +A ++ + ++ + Sbjct: 629 RQARECYPAAVWTELRAHAEATGAAKVACVGEGGIVADFDPAAGEGIECKRVACEAPQHL 688 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTY-SFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 + +R S S+I+ P + +K Sbjct: 689 SEAAVPYLVLRRRDGEGENAPLVPRLTSASQIEAYSTCPLCWFVSYRVK---PQSIDAGF 745 Query: 804 DRTDRGTLFHNIITELIKKRINKN--------TPEINHLMKQIIDSHFEKEN-------- 847 ++G H+++ L + + P L++++ D + Sbjct: 746 GNMEKGNFVHDVLEHLHARLPQEGMERVTPENLPRAQELLREVFDETLAEHAGKRGTEGP 805 Query: 848 --LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFADR 904 ++ L +E + + ++ ++ +E G L G DR Sbjct: 806 LVPLSAVEERQVAEILPQLEGVLAYESEALAPFAPRYLEFAFNELKVEYAGWPLGGRIDR 865 Query: 905 IDLLKSGFVDITDYK--TG------DNPKKETAQKLIDP-----------QLSLEAAALK 945 +D+ + DYK TG +P + P Q + A A++ Sbjct: 866 VDVDAENRAVVIDYKHRTGVEEFKLADPTVRDEESGTAPIDDPRWLPPHTQTLIYAQAMR 925 Query: 946 A---------------GSFSQIDCRKVANLFYIRLKQK---FKIDCITNDKKKYSADELS 987 G + A L + D L Sbjct: 926 RALDLDTRAALYFSTKGGKPALRGAASAELLEEERGDGRIPGLKKGFPGEGGSMDFDALL 985 Query: 988 EKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDH 1026 ++ + E + L+ G ++ ++ + Y+H Sbjct: 986 DRVEAGIAERLRELEAGNVA-AVDPTSAQAAHARCSYNH 1023 >gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S] gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S] Length = 758 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 87/730 (11%), Positives = 183/730 (25%), Gaps = 118/730 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R + G +P + + + + Sbjct: 62 SEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKM---------------- 105 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + L W A+ LA +ID + + Sbjct: 106 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLAGLIDQWKNKGL 162 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 E++ + + L + RL ++NA + ++ H Sbjct: 163 TPEEI---GAGESEGYANGRGQKL---YAAYQARLRDVNACDFGDLLLHVLTILKRHRDV 216 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + + +A + D W + Sbjct: 217 LESYQQRFRYIMVDEYQDTNSSQYLWLRLLAQSSKNICCV--GDDDQSIYSWRGAEVANI 274 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 ++ P + +L + V E R Sbjct: 275 LRFENDF-----PGAKIIRLEQNYRSTPHILGAASGVIAENGNR---------------- 313 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397 L + V +I + EEA + + + + A++ ++ Sbjct: 314 -----LGKTLWTDIDVGEKVRVIGVWDGPEEARRVGEEIESIERGGRSLDEVAILVRAQH 368 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 R + + G+ I G + L + + D +A +V P Sbjct: 369 QTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 428 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G E V + A + + R Sbjct: 429 GDKAVEKLHRLARTEGVP----------------LALAAARILDTDEMTPQARRSLGAFI 472 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 D Q + + S + ++ T + L+N+ Sbjct: 473 GDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTAESAGRLENLSELARAMEEYETL 532 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + +S + + + I+ ++ Sbjct: 533 GAFLEHVSLVMDNEAQA-----------------------------DERKVTIMTIHAAK 563 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FDT+ L G EG++P A + + L + E+ A A + Sbjct: 564 GLEFDTVFLAGWEEGIFPSQRALD---------EGGLNSLEEERRLAYVAITRA-RKSCI 613 Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 I + R I SR++ L + +W+ + D Sbjct: 614 ILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSERADPFANVQRG 673 Query: 755 KRPKPFPPLE 764 P Sbjct: 674 TGRGPGWQRA 683 >gi|307131100|ref|YP_003883116.1| exonuclease V (RecBCD complex), subunit gamma [Dickeya dadantii 3937] gi|306528629|gb|ADM98559.1| exonuclease V (RecBCD complex), gamma chain [Dickeya dadantii 3937] Length = 1185 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 101/944 (10%), Positives = 230/944 (24%), Gaps = 128/944 (13%) Query: 44 LASVTIYVPTKRAIQELRSEFIEI--TGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 L + I V + Q L+ G + L + +L Y+ P Sbjct: 46 LENELILVQSNGIGQWLKLALARDVCDGGCGVAAALDVELPSRFFWQVYRSVL-GYDQVP 104 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S + L + RL+ + L L LA+ LAD+ D + Sbjct: 105 ETSPFDKSLLVWRLVRLLPELLAQPEFAALARF-LQQDADLRKRYQLAERLADLFDQYQV 163 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRA 217 W + + L ++ W L ++ + + AL R Sbjct: 164 YRADWLADWTAGRDVLATS-RRGVEALPDDQRWQPLLWRALLADIGEALSGTSRAALHRR 222 Query: 218 EAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 + G +++ G + L++ + + + H Sbjct: 223 FLDEVKRRGDGDRPAGLPSRVMVFGISSLPQQALELLAAIGRWTQVFMCVHNPCEHYWGN 282 Query: 270 I--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 I ++ Q++ L + R+ + L Sbjct: 283 IIADKDLLRAERARQQRKPGMPEAVALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQ 342 Query: 322 GRSMVISKSFL----------------PPDTSDMRNTDILENKIPNIQK-CFSDVALIEA 364 S++ D D+R + P I + A Sbjct: 343 YESLLQPLISRIDLFDSNGESCLLNQLQDDIRDLRPLAESRARWPAIDPHQDRSIRFHVA 402 Query: 365 DNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL--------TRFGIN 412 + + E + L + + ++ D N + I Sbjct: 403 HSAQREVEVLHDQLLAAFAADPTLRPRDVIVMVPDINGYAPHIQAVFGLIDRQKDPRYIP 462 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF------------- 459 ++ P L + L LL + L++ P + F Sbjct: 463 FSVADRGPRQNNLLLAALERLLTLPQSRVAVSDVLDLLEVPAVRQRFSIAEEQLPLLQRW 522 Query: 460 ----PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 ++ A+ L + + L+ ++L + + Sbjct: 523 IRAANVRWGLHARQRQSLDLPDAPEQNSWFFGLRRMLLGYAVGTGDAWRDIEPLDEIGGL 582 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 D LA L + L + + ++ E + Sbjct: 583 DAVLAGQLA----LLLDRLDYSWQQLCQPATPAQWGERLRALLSTFFTADEGEDGFMLLQ 638 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 E L + S +E + W+ + + + + + + Sbjct: 639 LDEGLQNWLEACESVTLEQALPLSVVREHWLGLFEQSSLTQPFF-----AGAVTFATLMP 693 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 R + F + L G+N+G +P+N F ++ + + + Sbjct: 694 MRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSARE 752 Query: 696 HLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFF---------------------DNLK 732 L + R +N S + +L + + Sbjct: 753 RLYISWVGRSIHDNSERPPSVLVAQLRDHLSNGWQTVDGQDVLSALTVEHRLQPFSPDYF 812 Query: 733 KRGQCYLDWTRKLDYTTKQPH-------------YKRPKPFPPLEAQPRTYSFSEIKQLI 779 G + R+ + Q + ++ + Sbjct: 813 TAGSPLFSYAREWRAGLLPQDDGLLPQDRLLPQNAPATETALDEYRQDGVLTLRQLADFV 872 Query: 780 NDPYAVYARRILKLD-------FIPHFKKDPDRTDRGTLFHNI--ITELIKKRINKNTPE 830 DP + R L + D + L H + + + ++ Sbjct: 873 RDPVRSFFRLRLNVWFEQADATSQDQEPFAIDALENWRLQHELIQVQQAALRQRIPREQA 932 Query: 831 INHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + + +I + ++ + L ++ F +E++ Sbjct: 933 LAEQLARIARR--GELAPGGFTAVLEQDLAEPMADLFTRYEQER 974 >gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] Length = 864 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 74/724 (10%), Positives = 187/724 (25%), Gaps = 58/724 (8%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L + P + T +A +E++ ++ G + + + + + Sbjct: 67 VLTRRIAYLLAVGGAQP---GEILAITFTNKAAREMKDRVTDLVGGRGRSM-WVSTFHSM 122 Query: 85 VEEKFTADLL-LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 A+ + + + LA+L+ N Sbjct: 123 CVRILRAEATQIGLKTTFTIYDQADSQRLAQLVAGGLNIDTKKYP--------------- 167 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 A+ LA I ++ E E + + + + ERL + Sbjct: 168 -----ARMLAASISNLKNELIDPETALERADSDQA-------TLVAKVYQGYQERLRAAS 215 Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 A + + H + +++ + A L+ + Sbjct: 216 ALDFDDLIMQTVFLLQRHPAVAEHYRRRFRHVLVDEYQDTNHAQYLLVKALVGGTADEQE 275 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 + D + + + Y+ ++ E + Sbjct: 276 VRTAD----GELVRAAASEVPPAELVVVGDADQSIYAFRGATIRNIVEFERDYPN-AQTI 330 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA--- 375 + ++ RN + Q + + DNE +EA + Sbjct: 331 MLEQNYRSTQTILSAANSVIARNPQRRAKNLWTAQGGGTRITGYVGDNEHDEAQFVGKEI 390 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 AL + + A+ + +R ++ R G+ I G+ + L Sbjct: 391 DALVDAGEAVFGDVAVFYRTNSASRSLEDVFIRNGMPYRIVGGVRFYERKEVKDALAYLR 450 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL-RGNKNSYDIMDLKSLVLD 494 A+ +D + + ++ P G + E + + + +I L + + Sbjct: 451 AVANPDDEINLRRILNTPRRGIGDRAEACVSVFAERERIGFGEALQRTGEIPGLAARSAN 510 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDW 553 +++ + E +L +++ + + + Sbjct: 511 SLSSFAELLAGLRSEVGFGMEPADLLTAVLERTGYRAELENSEDPQDGSRLENLDQLVSV 570 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 + T L L E G + + +A + + + + Sbjct: 571 LRETTETLLAGGGLAALGLAADAGPEPGDGADAPAEPGPSADEDVPPDAGDLLLAVLEQL 630 Query: 614 D--GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + + ++ ++ L F + + G +G++P A + Sbjct: 631 SLVADADSVPDSAEGMVTLMTLHTAKGLEFPVVFVTGWEDGIFPHQRALGDDSELAEERR 690 Query: 672 LNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 L + + + M RS ASR+L + + Sbjct: 691 LAYVGITRAMKRLYVTRAMM---------RSAWGQPAANPASRFLDDIPAELIEWRRTDA 741 Query: 732 KKRG 735 R Sbjct: 742 DARA 745 >gi|297571477|ref|YP_003697251.1| hypothetical protein Arch_0907 [Arcanobacterium haemolyticum DSM 20595] gi|296931824|gb|ADH92632.1| conserved hypothetical protein [Arcanobacterium haemolyticum DSM 20595] Length = 283 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 23/246 (9%) Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 + S S + + P R I +L P + RGT+ H+++ L Sbjct: 1 MATIHAALSPSRVSDFRSCPLKFRFRVIDRLTEPPSLE-----ALRGTIVHSVLERLYDV 55 Query: 823 RINKNTPEINHL-MKQIIDSHFEKENLPPHIDII------WRHLFHKISHSFLEHEEKIQ 875 ++ + ++ I + H EK + W + S+ E Sbjct: 56 PASERGEALAQESLENIWEQHAEKSPADAELFTDSESFTTWLESARPLISSYFTLEN--P 113 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 +E + S G+ + G DR+D +G + I DYKTG +P Q Sbjct: 114 QYLEPHGRERFVNATLPS-GLAIRGIIDRLDKAPNGALRIVDYKTGKSPAPRF-QDGAIF 171 Query: 936 QLSLEAAALKAGSFSQIDCRKV-ANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL 994 Q+ A AL F + + L Y++ K+ D + D + + + + Sbjct: 172 QMRFYATAL----FYEEGTLPLRTQLLYLKDKRVLTYDPVPADVEATTNE--LNHVWSAI 225 Query: 995 IEIVTL 1000 + Sbjct: 226 RGRIDD 231 >gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] Length = 665 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 83/720 (11%), Positives = 182/720 (25%), Gaps = 136/720 (18%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLN--PPVS 104 + T +A +E+ +TGKK T L + + + + L Sbjct: 55 ILALTFTNKAAREMWERVRTLTGKKLTNL-TVGTFHSFGAQILREHIHLLGYRPTFSIYD 113 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + + + I + + + +I I+T Sbjct: 114 TQDQKALIKQCIQE---------------------VGLNPDLANISAIRTLISAIKT--- 149 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 W + + + + L +A + + H Sbjct: 150 ------------GRAGWNAENEVYRPVYEEYHAHLRAYHAVDFDDLIVLPIGLFETHPEV 197 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I+I + R + +A V+ D W ++ Sbjct: 198 LASYRERFRYILIDEFQDTSILQYRFIKLLAEEHRNLCVV--GDDDQSIYSWRGANYENF 255 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + ++ + + Sbjct: 256 ALFERDFPER--------------------------KEVKLEQNYRSVQTILEAANQLIS 289 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 NT+ E ++ + + + + L NEREEA IA +R + + + ++ Sbjct: 290 HNTNRKEKRLWSGRPGKTSIYLTFPSNEREEAEYIAETIRTVVLKEGIPYHEIGVLVRTN 349 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +L ++ R I +S G + + L I +D +++ ++ P Sbjct: 350 SLMAPIEDAFLRHNIPYKLSGGTSFFERKEIKDIIAYLRVILNPDDDVSLLRIINTPRRG 409 Query: 457 FGFPEKYLS-RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G ++ EL + L V + + Sbjct: 410 IGRQTLHILGEYATEHELSIYSALTSLLYAQGLPPQVARTFDEFVSLIEEFGERITGRTS 469 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKN----STCGNLSISDWTKLTVTCLQNVCLDEHRK 571 E LVD I + ++ N+ + SD + N+ Sbjct: 470 IAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFSDLIERWENDPDNL------- 522 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 N + + + + + + ++ Sbjct: 523 -----------------------------NPNLGAYLTRISLITKDELDEEDTKGKVNLM 553 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EG+ P A L+ +E I + F +A Sbjct: 554 TIHAAKGLEFAHVFLAGVEEGIIPHARA--------------LEDSETNIEEERRLFYVA 599 Query: 692 N-GTRHLIYTRSLR-----ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 R +Y S R + S +L+ L + D ++ Sbjct: 600 ITRAREALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETEAPPSDLTEEDVEDIFARM 659 >gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] Length = 1119 Score = 98.5 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 85/899 (9%), Positives = 219/899 (24%), Gaps = 136/899 (15%) Query: 123 LPDIIKDLYPESPLSLPISPANAI-WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 L + P + A L L +D + + + + + + Sbjct: 276 LYSDGRSKVGNWPQANHKGAVEAFEPLRGELDTFLDEVWQVSQIEKAIRSFEMT------ 329 Query: 182 LLAADFLKIASKYWTERLVELNASSP----VGYQIALMRAEAEHLMKGTKG----PIIIA 233 F + R + + + L + + I++ Sbjct: 330 QALHTFATAFLPMYEARKQQHGWLDFDDLILKAKSLLTNPQVAQWVLFRLDGGIDHILVD 389 Query: 234 GSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + + PA ++ +A H + D + + + Sbjct: 390 EAQDTSPAQWSVIENLAQEFTSGEGARHDEPRTLFVVGDKKQSIYSFQGADPNAFDTMRD 449 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKR--------LGNVSNEMYGRSMVISKSFLPPDT 336 Q + LD + + + + Sbjct: 450 MFK-ERLEQIEIGLNTLSLDYSFRSSEPILTLVDQTFSGDRSAGLEKDVFHIAFKNQMPG 508 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRM--SLDENKKKSALIT 393 I + F + + D+ + A IA + + + + + Sbjct: 509 RVDLWPAIEPTNTKEDRDWFDPIDQVGQDHHYVQLARGIADEILRMKAHETIPDEVDRVP 568 Query: 394 ----------------ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + L + + G+ + + + + L +T++L+ + Sbjct: 569 MKRPITEGDILILVQGRNSGLFSEIIAACKQRGLAVAGADRLKVGAELAVRDITAVLSFL 628 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 D +++A +K P+ + + Y K + +LD + Sbjct: 629 ALPEDDLSLAGALKSPIFGWSEQDLYDLAHKRPKGQYLSATLRERASEFPKTREILDDLD 688 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 Q + RL LL + + + + S Sbjct: 689 RQADFLRPYDLIERLLTRHDARDRLLGRLGTEAEDGINALLAQALAYERSSIPS-----L 743 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L+ + E + + + + + ++ + Sbjct: 744 TGFLEWMAAGE-------------LEIKRQMDNAGDQIRVMTVHGAKGLEAPIVFLPDTA 790 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 K + + T+ R + D +V+ + Sbjct: 791 KKKPMPLPKLTTLSDTVVWRGASTDV---------------------PQVISDRTERERL 829 Query: 678 EKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 ++ + + + L+ + + + + G + +G Sbjct: 830 KQEDERQRLLYVAMTRAEKWLVVCAAGDVGGDGDSWYQDVTYGMSQAGAVDETFVIGQGL 889 Query: 737 CY---------LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA 787 + L+ K +T + P P + T S S++ Sbjct: 890 RFANDGWSDLPLNQLVKPSASTSKVPDFATIPTPQHDDPLPTLSPSDLG----------- 938 Query: 788 RRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKEN 847 +RGT H ++ L + ++ +L+ DS F + Sbjct: 939 GAKALFGETETADDGTS-KERGTAIHLVLEHLPHIKPEDHSVVAENLLG--TDSPFLADA 995 Query: 848 LPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRID 906 + ++ + I +P ++++ G + G DR+ Sbjct: 996 IETSQRLLAKPELSHIFE-------------TGTLAEVPITANLDALDGRRIHGTIDRLV 1042 Query: 907 LLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 + V D+K+ + + I Q+ AAL+ + V+ Sbjct: 1043 VDSE-TVTAIDFKSNRMVPDVVDKTPEGILRQMGAYLAALRLV----YPSKTVSTAVLW 1096 >gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156231738|gb|ABU56521.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 759 Score = 98.1 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 86/809 (10%), Positives = 212/809 (26%), Gaps = 108/809 (13%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L + ++P + T +A +E+R ++ G + + + Sbjct: 39 VLTRRVAYLIGVHGVDPH---HILAVTFTNKAAREMRDRLEKLLGPGEAAALTVGTFHSI 95 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 D + +R + R + +++DL + P + Sbjct: 96 CARFLRRDSIHL--------GRERDFAIYDTDDQLR-VMKRVLRDLNLDEKKHAPRAIHA 146 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 A I + E + + + + + + E L NA Sbjct: 147 A----------ISRAKNELIDPDAYSRHAHSYF-------EEVVARCFARYQELLRGANA 189 Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + +R EH + G ++ + A L+ +A+ + Sbjct: 190 LDFDDLLVETVRLFEEHPAVLERYQERYGFLLADEYQDTNRAQYVLLKQLASRH--HNIF 247 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D + ++ + + + L+ + + +V+ Sbjct: 248 VVGDEDQSVYAFRGADIRNILSFERDYPEAQ---------VILLEQNYRSTQAILDVAQA 298 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + RS + T E + V +IE ++ EEA +A + Sbjct: 299 VINRSAQRRRDKR-------LWTRNGEGVL---------VQVIEGYDQDEEAQLVAGEIA 342 Query: 380 MSL---DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + A++ +R ++ L I G + L Sbjct: 343 RLIAGGAYQPGDIAIMYRTNAQSRAIEEALIARQAPYIIVGGTRFYERKEIKDALAYLRL 402 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 D ++++ ++ P G + R + + + + Sbjct: 403 ALNPFDDISLSRVLNWPARGIGQRTQEDLER---------RAGAAAVPLYVMLHTLAANA 453 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + T P + LL L+ ++ T ++ DW Sbjct: 454 EAAADQTTSPAPARTGEMPSRARNALLG------FLTLIDESLDRRQTLSLGALMDWLFE 507 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 V + + + + + + + + E + + A + + + Sbjct: 508 RVGFREALRREYGDEEGDDRWNNVME-----LRNVAEQYADLPL-ASQLSTFLEEVALVS 561 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + E+ + + + +++ L F + L GL EG+ P + + Sbjct: 562 DIDTLQEERNAVTCITLHQAKGLEFPVVFLVGLEEGLLPHARSAD--------------D 607 Query: 677 AEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 + + + A + +Y R+ SR+L + Sbjct: 608 RDALDEERRLFYVGATRAKERLYLLHAFRRATYGRTEIATPSRFLHDIPPDLLQRAPKRG 667 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 Q L + + P P A P +A + I+ Sbjct: 668 YAAAQMVTGRAAALRNPRRN----QAAPVSPHSAAPDGPRAISFFAGQKVHHAQFGEGIV 723 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + ++ G ++ Sbjct: 724 VSSKLVEGDEEVTVAFVGKGVKRLLASFA 752 >gi|271500542|ref|YP_003333567.1| exodeoxyribonuclease V subunit gamma [Dickeya dadantii Ech586] gi|270344097|gb|ACZ76862.1| exodeoxyribonuclease V, gamma subunit [Dickeya dadantii Ech586] Length = 1169 Score = 98.1 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 99/935 (10%), Positives = 225/935 (24%), Gaps = 117/935 (12%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 L + I V + Q L+ T + + + A + P Sbjct: 37 LENELILVQSNGIGQWLKLALARDTHDGGCGVAAALDIQLPSRFFWQAYRAVLGREQVPE 96 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 ++ L +L L + L LA+ LAD+ D + Sbjct: 97 TSPFDKPLLVWRLLRLLPDLLTQPEFAALARFLRQDTDLRKHYQLAERLADLFDQYQVYR 156 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKY----WTERLVELNASSPVGYQIALMRAEA 219 W + + + L ++ W L + + + AL R Sbjct: 157 ADWLADWSEGRDVLTSH-RRGVEPLPEEQRWQPLLWRALLADTGEALSGTSRAALHRRFL 215 Query: 220 E--------HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI- 270 + G +++ G + L++ + + + H I Sbjct: 216 DEVDRRGDSERPAGLPSRVVVFGISSLSQQALELLAAIGRWTQVFMCVHNPCEHYWGNII 275 Query: 271 -------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 ++ Q++ L + R+ + L Sbjct: 276 ADKDLLRAERARQQRKPGMPEVIALEELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYE 335 Query: 324 SMVISKSFL----------------PPDTSDMRNTDILENKIPNIQ-KCFSDVALIEADN 366 S++ D D+R ++ P I S V A + Sbjct: 336 SLLQPVISRIDLFNSNGEDCLLHQLQDDIRDLRPLAESRSRWPAIDSDQDSSVRFHLAHS 395 Query: 367 EREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL--------TRFGINID 414 + E + L + ++ D N + I Sbjct: 396 PQREVEVLHDQLLAAFAADPTLRPSDVIVMVPDINSYAPHIQAVFGLIDRQKDPRYIPFS 455 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF--------------- 459 ++ L + L LL+ + L+ P + F Sbjct: 456 VADRGARQNNLVLAALEKLLHLPQSRVAVSDVLDLLDVPAVRQRFAIEEEQLPLLQRWIR 515 Query: 460 --PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 ++ A+ L + + L+ ++L + D Sbjct: 516 AANVRWGLHARQRQSLNLPDAPEQNSWFFGLRRMLLGYAVGAGGAWRDIEPLDEIGGLDA 575 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 LA L + L + + ++ ++ E + Sbjct: 576 ALAGQLA----WLLDRLDYSWQQLCQPATPVQWCERLRVLLSTFFAADDGEDGFMLLQLD 631 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E L + S + + W+ + + + + + + R Sbjct: 632 EGLQNWLEACESVALTQELPLSVVREHWLGLFEQTSLTQPFF-----AGAVTFATLMPMR 686 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 + F + L G+N+G +P+N F ++ + + + L Sbjct: 687 AIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYRPGDRSRREDDRYL-FLEALLSARERL 745 Query: 698 IYTRSLR--ENNIPTIASRWLQRLLVLG---------------------GTDFFDNLKKR 734 + R +N S + +L F Sbjct: 746 YISWVGRSIHDNSERPPSVLVAQLRDHLSNGWRIVNGQDVLPALTVEHRLQPFSPEYFTA 805 Query: 735 GQCYLDWTRKLDY------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYAR 788 G + R+ Q + ++ + DP + R Sbjct: 806 GSSLFSYAREWRAGLPSYDGASSQTAAASDAVLDDYVQDGVLTLRQLADFVRDPVRSFFR 865 Query: 789 RILKLD-------FIPHFKKDPDRTDRGTLFHNI--ITELIKKRINKNTPEINHLMKQII 839 L + D + L H + + + +R + +++I Sbjct: 866 LRLNVWFEQEDPTSQDQEPFAIDALENWRLQHELIQVQKAALQRQIPREQALAEHLQRIT 925 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + ++ + L ++ F +E++ Sbjct: 926 RR--GELAPGGFATVLEQDLAEPMADLFTRYEQER 958 >gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] Length = 1182 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 93/924 (10%), Positives = 214/924 (23%), Gaps = 197/924 (21%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------ 229 +K+ ++ + + + ++ +E G P Sbjct: 282 DMHPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQ 341 Query: 230 -------IIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 +++ + ++ V + + D + Sbjct: 342 YRNKFAEVLVDEYQDTNFVQESIIKFVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLG 401 Query: 282 TSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKS 330 T + + L K++ + + + + S Sbjct: 402 KYKRFTPEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADAELKLGAS 461 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384 + + I +++ + V + +A + EA +A ++ +D Sbjct: 462 YPEGEDVAAELLCIHQSEGEESVEGEDGVEVEKA---QLEARLMAQRIKAMVDSGYEVYD 518 Query: 385 ---------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + ++ A ++ EL GI + +++ ++ Sbjct: 519 RKTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVTVMMNVFR 578 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 I + +A +++ P+ E + RA K ++S + Sbjct: 579 VIDNPMQDIPLAAVLRSPIVGLNDEELAMLRA----------HEKKGSFYEVMRSFLQGA 628 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 ++ H S+SD Sbjct: 629 PLEEEAELHGKLQWFY------------------------NLLQGWREFARQQSLSDLIW 664 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + I+ R D Sbjct: 665 KVYRETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDM 724 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFL 664 T + E+ + I+ +S+ L F + + GL + F+ Sbjct: 725 GTARALSEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFI 784 Query: 665 SRVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--- 711 + + E + + + LI ++++ Sbjct: 785 DPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWL 844 Query: 712 --------------------------ASRWLQRLLVLGGTDFFDNLKKR----------- 734 S + R + +N+ Sbjct: 845 DSREHTDWLLPDYVRAGASCYLDWIAPSLYRHRDSEMLLELGQENIPNEIYEYDASWKVE 904 Query: 735 ---GQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLI----------- 779 G L + + R K P P + + Sbjct: 905 VVDGSTLLAPEPVQEEKQELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQ 964 Query: 780 ---------------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 ++ + R +K KK ++GT H ++ + Sbjct: 965 SVTEIKRNYQSEDGSDNAFIKKLRTPIKTRPRFMEKKGLTYAEQGTAVHAVMQHV----- 1019 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N P +++ I KE L + +I F K + + + Sbjct: 1020 NLQKPITLETVQEQIAEMVNKELL--TFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVERE 1077 Query: 885 IPAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKET 928 +P M + + + + G D + + G V + D+KT G P Sbjct: 1078 VPFTMMLSAEEAYQDWQNQSRESVLVQGVIDCMIEEEDG-VVLIDFKTDTIEGKFPGGFD 1136 Query: 929 AQKL-----IDPQLSLEAAALKAG 947 K QLSL A AL+ Sbjct: 1137 QAKPILAERYKVQLSLYAKALEKS 1160 >gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus metallidurans CH34] gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] Length = 1187 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 94/815 (11%), Positives = 185/815 (22%), Gaps = 86/815 (10%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK--------GTKGPIIIAG 234 + + + A + + A+ +++ Sbjct: 363 ALYRLGDALLERYQRHKGDQRAMDFADLEWLAAKLMADEETATYLQVRLDARYRHLLLDE 422 Query: 235 STGSIPATARLMSTVANHPNGA----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 + P R++ G V D + + + Sbjct: 423 FQDTNPLQWRILQGWLAGYQGLGEKPTVFLVGDPKQSIYRFRRADARLFDAARVMLQDGF 482 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 + D GR + + + Sbjct: 483 GATVLRTNRTRRNRPEVLDWVNAVFDHARAEGRYPLYETQTTALGGPAGPVWLLPLVEPE 542 Query: 351 NIQKCFSDVALIEADN------------EREEAISIAIALRMSLDENK------------ 386 + + D EE +A L D+ Sbjct: 543 EAEDDEASEGDGHRDTLTQPRTQKGDSLRYEEGRRVAAWLHYLRDQVPVREGDGTRPAGW 602 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 + L+ + + + GI L TTL + L++LL + + + Sbjct: 603 RDMHLLVRRKTFLADYERAMREAGIPCLSPRRGGLLTTLEALDLSALLAFLMTPESDLDL 662 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A ++K PL + L R +++L L + T V Sbjct: 663 AHVLKSPLVGATDDDLVLLAMMEGEGGWWAR----------IEALGLPERVSDSLRTGVA 712 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + L+ + LVD I Y + +++ L L Sbjct: 713 RLRGWLALAPHKPVHDLVDQIYHQGEVRRRYAEAAPAAIREQVLANLDAFLKLSLD---L 769 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 D R F +E + + + + + E+ + Sbjct: 770 DGGRYPSLPKFIDELQEIRRGDEDESPDEGGMGEGVED--------TEAESDDAADNQLD 821 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK---NPFLSRVMQSDLNLKTAEKYIGQ 683 + IL ++ L +IL N + + + + + G Sbjct: 822 AVHILTVHAAKGLEAPFVILLDANHSDPAADRGGILVDWPPTSAVPRHFSAYGKRDERGM 881 Query: 684 AA---HDFEMANGTRHLI-YTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 A D E A R + ++ + + G Y+ Sbjct: 882 ARAPLFDAEAALADRENWNLLYVAMTRAQQGLLVSGIKGRASKAEKEDAPGAEIAGSWYV 941 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P+ S Y A L +D Sbjct: 942 RLAAA---GVGDEITAYPETDVAAVDTLTAASERIRYTDFRLRYRDAADDRLPIDDADDE 998 Query: 800 KKDP----DRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + D G L H ++ + + + ++ ++ P+ Sbjct: 999 AEGIVFDADAAAHGELVHALLERVSRY---PDAHGSLPDVETVLRWFPLTGAGAPNARER 1055 Query: 856 WRHLFHKI---SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLK--S 910 WR + LE + V+ ++ + G RID L Sbjct: 1056 WRQQAEAAVADLRAMLEAPALRELMFPVDAVSARNEVELYDG----RGRLLRIDRLVEFD 1111 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 V I DYK QL AAA+ Sbjct: 1112 ERVVIIDYK---LRLLPQEHAGYRTQLLRYAAAVA 1143 >gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] Length = 1190 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 82/808 (10%), Positives = 197/808 (24%), Gaps = 93/808 (11%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIP 240 A L+ W + + + + G AG G S Sbjct: 391 QRALGLLREPGAAWV-MYKLDGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEE 449 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 R + V ++ G D ++ + + + Sbjct: 450 EPPRTIFAVGDYKQSIYGFQGADPDSFREWRQKFKKRVQDAHLLWREPDLTVSFRSTAPV 509 Query: 301 DFL--DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 L ++ E G V + ++ + + + + Sbjct: 510 LKLVDEVFAESDAAKGVVEEPGQIMEHITARPGEGGRVELWPLVETEDEEDSISPWEPAQ 569 Query: 359 VALIEADNEREEAISIAIALRMSLDEN----------KKKSALITADRNLARRVKLELTR 408 + ++ A ++A + L++ L+ + L Sbjct: 570 GNATRQSSRQKLADAVAGYIFRQLNKKSLSGKNPLTAGDVLVLVPRRSPFVGMLVRALKG 629 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 I + L+ L + SL A+ D + +A ++ PL Sbjct: 630 HNIPVVTLVRTGLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDDSLMALATV 689 Query: 469 NALELVAL---RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 R L+ + Q + S A L Sbjct: 690 REKGEPLWSALRERHTEQSDWKQAWNFLNGLFRQVDYLTPYELLSAALGPGGARARFLAR 749 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + P+ + S + W +T+ Sbjct: 750 LGPEAAEPIDELLSAAIRYQDQHPPS------------------LQGFLHWMRHSEETVK 791 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 ++ + A+ + + ++ + L + Sbjct: 792 REAEAGGDSVRIMTAHGSKGLQARLVILPDT-------------VGLPRFEDRLFWAHDK 838 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 ++ ++ A + L+R ++ + + E+ + + + Sbjct: 839 TQNVDVPLYVPRNALSVGLTRSLKDVMRGRVVEE---YNRLLYVALTRAADRLVVCGWKP 895 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 S W +R V + + + L+ T ++ + + ++ Sbjct: 896 GRNVPAES-WYERCRVGFEKAGATEVDFQEGGWSGPMLLLEETQQEQPHPQKSRPSSVDN 954 Query: 766 QPRTYSFSEI--------------KQLINDPYAVYARRILKLDFIPHFKKDPD------- 804 + S + + P A L +P + D Sbjct: 955 RMNVTSLPLWMGTAPLWKPILPEAESPLARPLAPSKPDDTMLGPLPPVRSPLDIAAVTPA 1014 Query: 805 -----RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 RG L H+++ L + + + + + E +I Sbjct: 1015 KAREAAFRRGNLVHSLLQFLPNCPVEQQPAMAHQWLARPASGLSSHEATVLAQQVIAVLR 1074 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 ++ F + ++ V + G + G DR+ +L + V + D+K Sbjct: 1075 LPELVDLF---DPTARAEQRLAGV---------ANGQVIVGQVDRLRVLPN-KVLVCDFK 1121 Query: 920 TGD--NPKKETAQKLIDPQLSLEAAALK 945 TG + + L Q++ A L+ Sbjct: 1122 TGRHAPRRVQDTPVLYLRQMAAYRALLQ 1149 >gi|311900006|dbj|BAJ32414.1| hypothetical protein KSE_66550 [Kitasatospora setae KM-6054] Length = 288 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 24/247 (9%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + P R I +L P RGTL H ++ L + T Sbjct: 18 GLSPSRAGDFMTCPLLYRLRVIDRLPEPPSQ-----AATRGTLVHAVLERLFDHPPAERT 72 Query: 829 PEINHLMKQIIDSHFEKENLP--------PHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 PE + + E P W K+ + E+ + + Sbjct: 73 PERARGLLEPQWERLLGERPELAELFPGEPGELAGWLADAGKLVDRWFRLEDPTR--LHP 130 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLE 940 + + + A+ S G+ L G+ DR+D+ SG V + DYKTG P + Q+ Sbjct: 131 VERELYVETALAS-GLPLRGYIDRVDVAPSGEVRLVDYKTGRAPS-RDFEGKAMFQMKFY 188 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 A + L + L + D+ + E ++L I Sbjct: 189 ALVVWR-----WKGVVPKRLQLVYLGGGGDVVTYDPDEADLLSVERKLEAL--WEAISAA 241 Query: 1001 LQNGEQP 1007 + G+ P Sbjct: 242 VATGDFP 248 >gi|283768592|ref|ZP_06341504.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219] gi|283104984|gb|EFC06356.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219] Length = 858 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 61/432 (14%), Positives = 146/432 (33%), Gaps = 42/432 (9%) Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 L+ + T+ + L +L D + GLN +P +K+ + Sbjct: 375 FFLELVSQFQSIQLPNQIGTIMVTD-LRHPVLQADVSYIVGLNGHTYPNVPSKSGIFNES 433 Query: 668 MQSDLNLKTAEK----YIGQAAHDFEMANGTRHLIYTRSLRE-NNIPTIASRWLQRLLVL 722 + + + E+ Y+ Q + F + + ++ S ++ S +Q+L Sbjct: 434 YYAQIPYPSYEERYHTYLSQLSWIFHSG---KQIHFSYSQKDYEGKKLEVSYDIQKLF-- 488 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 + K + + + + + + S S I++ P Sbjct: 489 -------SQKAQTKKAKELLPRKRNRHEDNLSSSFMESWFTQNPILKGSVSSIEEWYRCP 541 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 Y + R+LKL F+ P+ GT+ H+++ + + ++ ++ +D + Sbjct: 542 YQYFLNRLLKLKEQNVFE--PNSLYIGTITHSLLEKALNEKKKLYYELSLQDLQSQLDPY 599 Query: 843 FEK-ENLPPHIDIIWRHLFHKISH------SFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 F+ + L P + + K++ +L+ E+ ++ I ++ + G Sbjct: 600 FQLWKVLDPDRLEMISLIKDKLASNLYFCLQYLKEYEQNYDFLDPIASEQEFQIGL-FDG 658 Query: 896 IHLTGFADRIDLL-KSGFVDITDYKTG-DNPKKETAQKLIDPQLSLEAAALKAGSFSQID 953 + L G DR+D ++ + DYK+ K QL L+ ++ Sbjct: 659 LELVGKIDRLDQDQRNQDYYLYDYKSSLHKMDKSKYLSGQQIQLMTYKLVLEQSGDKKVR 718 Query: 954 CRKVANLFYIRLKQKFKIDCITN-DKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHL 1012 +Y L + + + S ++ + + + + + Q F Sbjct: 719 AT-----YYFSLLPEKQHLPSLQYKFDRRSVEKDPQDFYE--TDYLRSIFLQNQSFRGW- 770 Query: 1013 RLSEKSNIQSEY 1024 + S+Y Sbjct: 771 ---KLDEDVSDY 779 >gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum JL354] Length = 1158 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 90/833 (10%), Positives = 195/833 (23%), Gaps = 110/833 (13%) Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKG 228 + A + + + W E + + + Sbjct: 326 LAEYLTPALELGRRFALRWDEAKRVHGLVDFDDQIARAATLLGNSEMAQWIGYKLDRSFD 385 Query: 229 PIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 I++ + + + ++ + A + D + + Sbjct: 386 HILVDEAQDTNDSQWAIIDALTQDFFDGLGAAGARLRTIFVVGDYKQAIFGFQGTEPRLF 445 Query: 280 -------------------NITSSNTTYSTHPQYSLAKLLDF---------LDIKREDVK 311 + P LA+L LD V Sbjct: 446 VDKREQYDARINSAIANAEALAHETREAPLVPLAPLARLGLERNFRSSQVILDFVDRAVA 505 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 +G + M G + + P + E+ P + + A R A Sbjct: 506 HVGTQAMGMPGEEVQHTGEDRPGRVTLWAPIRAEESDDPEAVEEDGAETWLPAPERRM-A 564 Query: 372 ISIAIALRMSLDE-------------NKKKSALITADRNLARRVKLELTRFGINIDISAG 418 IA ++ L++ L+ R LA + L G+ + Sbjct: 565 DRIAAQVKQWLEDGHPLTKGGTRRAGPGDIMILVRKRRALAGLIVARLHAAGVPVAGVDR 624 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + L L L + L + D + +A L+ PL + + ++ + Sbjct: 625 LRLGAPLAVKDLLAALRFAAQPRDDLMLANLLVSPLGGWSQDDLLEHGLRDKSVGLWDHI 684 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 ++ + A + L D + + L Sbjct: 685 RRSDAPLC-------MATADRLRALLARVDYEHPQALLHWLLTGPWDGRRKLVARLGREA 737 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 + + + + T + + WF+ + L + + + Sbjct: 738 NDPIDELVGAAFAYCAEHTPSLQGFLN----------WFDASDEELKREAAGSGDAVRVL 787 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 A+ + + ++ T P + + T+ L L + Sbjct: 788 TAHGSKGLQAPIVILADATGNPDRGPARAGELATDDG------RTVPLPSLPKEAKAGPV 841 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL--RENNIPTIASRWL 716 + K A + + +Y + AS + Sbjct: 842 V----------AAEEAKKAREREEHWRLMYVAMTRAEEALYIGGALLPSDKDVPEASWYA 891 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP-LEAQPRTYSFSEI 775 Q + + + + P Sbjct: 892 QAAALFDSEGGGEGEGVSDPIWGERHDLGTLADIAPPAPDAASRAQRPALPEWATRAPAA 951 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + P A A P + RGTL H ++ + + + Sbjct: 952 EPSPPRPLAPSAAGDDLAPNPPGLATGAEAAQRGTLIHRLLERM----PDIAPEDREARG 1007 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 + + + ++ + L L+H + + +E Sbjct: 1008 SAWLAAQAGDLSEGARAAMLEQAL------GVLDHPDFAALFAPGALAEVSLAATVEGQ- 1060 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 +TG DR+ + V + DYKT E Q+S A AL A Sbjct: 1061 -VVTGKLDRL-CVAEEEVLVVDYKTTRRAPTSLEQVPTATLRQMSAYAHALAA 1111 >gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025] gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025] Length = 1212 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 102/905 (11%), Positives = 247/905 (27%), Gaps = 123/905 (13%) Query: 147 WLAKNLADII---DIIETEEKKW-------EDLHALKN--------EKYGMWWLLAADFL 188 LA ++A +I + + K+ L LK+ ++ + F Sbjct: 304 KLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFA 363 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243 SK + + ++ NA ++ E L +++ + Sbjct: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------- 295 R++ ++ NG D + + N + HP++ Sbjct: 424 RMLELLS---NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGKLILLKEN 478 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 + LD L + + + + I + + Sbjct: 479 FRSQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538 Query: 356 FSDVALIEADNER---EEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409 + +E D+ + E +A + +E + L+ + R + + Sbjct: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598 Query: 410 GINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 GI + G ++ ++ L +I + A+ L++ P+ F + + Sbjct: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 N + + + + + + I + +++ LS L L D I Sbjct: 659 NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWRKFSLLNSLYDLIW 718 Query: 529 QC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEG 581 + + + ++ +++ + + L + + Sbjct: 719 KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778 Query: 582 KTLSSLFS------KIIETGSCIKA----------------------------NAIEWID 607 + I ++ I++I Sbjct: 779 ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIA 838 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + TL + L L ++ K + + Sbjct: 839 DMKEELEEKLLPIVKVSMDTL-PYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKG 897 Query: 668 MQSDLN-----------LKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTIA 712 Q L L A++ D+ +A L + S + T Sbjct: 898 SQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTED 957 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 D + ++ LD ++ + P +Q + + Sbjct: 958 KMGSLEAEQAYDADNLKDNRQSDDIARALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKF 1017 Query: 771 SFSEIKQLINDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + + K + K D T G+ H ++ L + Sbjct: 1018 YEPVMETEGVEVMQTSYQTKPKFELPQFSKKAGQDPTALGSSVHELMQRLHLS-EQVSLE 1076 Query: 830 EINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIP 886 +I + ++ ++ + +K KI H F + Q++ +K++ P Sbjct: 1077 DILTALAELSVEENVKKAIQ-----------VDKILHFFQTSQLGKLIQANADKVYREAP 1125 Query: 887 AKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 M + G D +L + + DYKT + ++ Q++L A Sbjct: 1126 FAMLQADPASGEDYVVRGIIDG-YILFDNRIVLFDYKTDKFTNSQAIKERYQGQMTLYAQ 1184 Query: 943 ALKAG 947 AL Sbjct: 1185 ALSQS 1189 >gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] Length = 1182 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 93/924 (10%), Positives = 213/924 (23%), Gaps = 197/924 (21%) Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------ 229 +K+ ++ + + + ++ +E G P Sbjct: 282 DMHPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQ 341 Query: 230 -------IIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 +++ + ++ V + + D + Sbjct: 342 YRNKFAEVLVDEYQDTNFVQESIIKFVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLG 401 Query: 282 TSSNTTYST-------HPQYSLAKLLDFLDIKREDVKRLGNVS----NEMYGRSMVISKS 330 T + + L K++ + + + + S Sbjct: 402 KYKRFTPEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADAELKLGAS 461 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE------ 384 + + I +++ + V + +A + EA +A ++ +D Sbjct: 462 YPEGEDVAAELLCIHQSEEEESVEGEDGVEVEKA---QLEARLMAQRIKAMVDSGYEVYD 518 Query: 385 ---------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + ++ A ++ EL GI + +++ ++ Sbjct: 519 RKTDSMRPVKYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVTVMMNVFR 578 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 I + +A +++ P+ E + RA K ++S + Sbjct: 579 VIDNPMQDIPLAAVLRSPIVGLNDEELAMLRA----------HEKKGSFYEVMRSFLQGA 628 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 ++ H S+SD Sbjct: 629 PLEEEAELHGKLQWFY------------------------NLLQGWREFARQQSLSDLIW 664 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + I+ R D Sbjct: 665 KVYRETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDM 724 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV-----------WPKNTAKNPFL 664 T + E+ + I+ +S+ L F + + GL + F+ Sbjct: 725 GTARALSEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFI 784 Query: 665 SRVMQSDLNLKT---------AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNIPTI--- 711 + + E + + + LI ++++ Sbjct: 785 DPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWL 844 Query: 712 --------------------------ASRWLQRLLVLGGT--------------DFFDNL 731 S + R + + Sbjct: 845 DSREHTDWLLPDYVRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPNEIYEYDASWKVE 904 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPK-PFPPLEAQPRTYSFSEIKQLI----------- 779 G L + + R K P P + + Sbjct: 905 VVDGSTLLAPEPVQEEKQELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQ 964 Query: 780 ---------------NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 ++ + R +K KK +RGT H ++ + Sbjct: 965 SVTEIKRNYQSEDGSDNAFIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHV----- 1019 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 N P +++ I KE L + ++I F K + + + Sbjct: 1020 NLQKPITLETVQEQIAEMVNKELL--TFEQAEEIAINRIVAFFDTDLGKRVLAAKSVERE 1077 Query: 885 IPAKMAIESIG------------IHLTGFADRIDLLKSGFVDITDYKT----GDNPKKET 928 +P M + + + + G D + + G V + D+KT G P Sbjct: 1078 VPFTMMLSAEEAYQDWQNQSRESVLVQGVIDCMIEEEDG-VVLIDFKTDTIEGKFPGGFD 1136 Query: 929 AQKL-----IDPQLSLEAAALKAG 947 K QLSL A AL+ Sbjct: 1137 QAKPILAERYKVQLSLYAKALEKS 1160 >gi|269138066|ref|YP_003294766.1| exonuclease V gamma subunit [Edwardsiella tarda EIB202] gi|267983726|gb|ACY83555.1| exonuclease V gamma subunit [Edwardsiella tarda EIB202] gi|304558110|gb|ADM40774.1| Exodeoxyribonuclease V gamma chain [Edwardsiella tarda FL6-60] Length = 1128 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 78/745 (10%), Positives = 181/745 (24%), Gaps = 75/745 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 I V + Q L+ E G + I L +L S Sbjct: 32 REVILVQSPGMSQWLQMELARSFGIAANID---FPLPATFIWDLFTRVLPDIPQRSAFSK 88 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +L L+ + ++ LS LA +AD+ D + Sbjct: 89 DAMTWKLMWLLPQFLDRPAFAPLA----HYLSDDTDRRKHFQLAARIADLYDQYLVYRPE 144 Query: 166 W-EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 W + + L +A + +TE+L + ++A Sbjct: 145 WLQRWEQGGLIEGLDSAQQWQAPLWVALRDYTEQLGQPQW-HRANLYQRFIQALKVSDRA 203 Query: 225 GT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I G + P + + H + ++ + I + Sbjct: 204 PPGLPRRVFICGISALPPVYLEALRALGEHIDVHLMFTNPCRYYWGDIQDYAFLARLQSR 263 Query: 283 SSNTTY-------------------------STHPQYSLAKLLDFLDIKREDVKRLGNVS 317 Q LL D L Sbjct: 264 RRRDYLLAQRSLGESQSALFRTPEQAAALFSEEGEQALSNPLLASWGKLGRDHMYLLAQH 323 Query: 318 NEMYGR--------------SMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + + + T + + +++ Sbjct: 324 GPQEVSAFVDLAQETLLQRIQRDMLELEDHACIAAAGQTLQDSRQKRRLASDDRSISVHV 383 Query: 364 ADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINID 414 + + E + +L + + ++ AD + + + Sbjct: 384 CHSPQREVEVLHDSLLDMFAADATLSARDVIVMVADIDSYAPFIQAVFGNAPAGRYLPFA 443 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALE 472 IS L +LL+ + + L++ P +F + + ++ +E Sbjct: 444 ISDRSARQLHPVVQALLALLDLPHSRFNAEQVLALLEVPALAARFDIDDDGIRLLRHWVE 503 Query: 473 LVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKEL-AVLLV 524 +R + + DL + + + + Sbjct: 504 ESGIRWGLDDDAVRDLALPATGQHTWQFGLTRMLLGYAMDSRSGEWQGVLPYDESSGTIA 563 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + Q L + + +++ W L L++ + Sbjct: 564 ELAGQLAQFLAALREWRQRLGQMQTLAQWQPLCRALLEDF--FVTDADSEAVCALIEQQW 621 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTL 644 L + + + D +T +D + + + + + R + F + Sbjct: 622 LKLIEEGLASAYPETLPITVLRDELTARLDNQRISQRFLAGP-INFCTLMPMRSIPFKVV 680 Query: 645 ILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR 704 L G+N+GV+P+ A F ++ ++ + + + L + R Sbjct: 681 CLLGMNDGVYPRTLAPLGFDLMAGKAQRGDRSRRDDDRYL-FLEALLSAQQRLYISYIGR 739 Query: 705 E--NNIPTIASRWLQRLLVLGGTDF 727 +N S + LL Sbjct: 740 SVQDNSERYPSVLVSELLEYIAQSH 764 >gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 796 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 69/672 (10%), Positives = 145/672 (21%), Gaps = 56/672 (8%) Query: 112 LARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHA 171 LA L ++ + K LA I + E + D Sbjct: 112 LAGLPQSFQILDTQDQLSAVKRLCKQFNVDEERFPP--KQLAYFIAGCKEEGLRPRD--- 166 Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGT 226 + + E+ + ++ + Sbjct: 167 -VEVHDSDTRKKV-----ELYQLYEEQCQREGVVDFGELMLRSFELLRDNDPVRVHYQRR 220 Query: 227 KGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 I++ + + +A V+ D + + Sbjct: 221 FRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGGVIAVGDDDQSIYAFRGARVGNMQ 280 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 ++ S + Sbjct: 281 DFVREFDVR--------------------------HQIKLEQNYRSYSNILDSANALIAH 314 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITADRN 397 N+ L + Q V + EA + EA I +R + E + + A++ Sbjct: 315 NSRRLGKNLRTTQGPGEPVRVYEAPTDLAEAQWIVDEIRQLVREGPMPRSEIAVLYRSNA 374 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + G+ + L + +D + +V P Sbjct: 375 QSRVIESALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGI 434 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + +L +S +L R Sbjct: 435 GARTLEQLQDAARGSGCSLHDAVSSVPGKAGANLGAFVAMVDVMREQTQGRNLRAIIGQV 494 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + L++H + S + + LDE Sbjct: 495 LESSGLLEHYRNEKEGADRLENLDELISAAESFV-TQEGFGRDAVALPLDETGAALTQSP 553 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +G + + + +T + ++ S+ Sbjct: 554 ASQGLDPNRPLLQQPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASK 613 Query: 638 LLNFDTLILGGLNE--GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 L FD + +GG+ E + L + T + +H + Sbjct: 614 GLEFDCVFIGGMEEGLFPHENAMSDQGGLEEERRLMYVAITRARKRLYLSHAQTRLLHGQ 673 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 RS + +P A +WL G + + Y R Sbjct: 674 TRYNVRSRFFDELPEEALKWLT--PRQQGFGSYAPDSRAASAYGAGARAGFGFNAAAFAS 731 Query: 756 RPKPFPPLEAQP 767 P P E Sbjct: 732 PPVPPRKEEPAH 743 >gi|304389518|ref|ZP_07371481.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327328|gb|EFL94563.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 285 Score = 98.1 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 82/251 (32%), Gaps = 28/251 (11%) Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 P P PP S S KQ P + + KL RG+L H ++ Sbjct: 8 PAPRPP------ALSASSAKQFQQCPLKWRFKYVDKLPEPQSP-----AALRGSLVHKVL 56 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEK------ENLPPHIDIIWRHLFHKISHSFLEH 870 ++ + E L + + ++ ++ Sbjct: 57 EDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSL 116 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E+ + + + + + S G+ L GF DR++ +G V I DYKTG P Sbjct: 117 EDPRR--LHPSGRELGVETVL-SSGLRLRGFIDRVEQAGNGDVRIIDYKTGKAPDMRFTG 173 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ + A + ++ ++ L ++ +T D + DE + + Sbjct: 174 E-YVFQMRMYALLYREQ--YRVTPKRT-QLLFL----GGNPQVLTFDPTDANVDEFAAEI 225 Query: 991 LKNLIEIVTLL 1001 +I L Sbjct: 226 NALWSDIAAHL 236 >gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] Length = 900 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + + + + A+ Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 I R + + L IIK + P S A I AK E + Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + + + L NA ++ H Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + PA +L+ +A P G L G P A + + Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 Y+ +I+ + G + + + Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398 N+ + + + AD ER+EA I +R + + A+ + Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ LTR + + G + L A D + ++ P G Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R L + + + A E Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542 Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + + + N+ + I + +L + + +L + Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + K A + G+ P E + ++ + Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPHEPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L F+T+ + G+ +G++P + + L E + + R Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708 Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721 L TR+ + + ASR+L + Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738 >gi|261855181|ref|YP_003262464.1| exodeoxyribonuclease V, subunit gamma [Halothiobacillus neapolitanus c2] gi|261835650|gb|ACX95417.1| exodeoxyribonuclease V, gamma subunit [Halothiobacillus neapolitanus c2] Length = 1183 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 70/833 (8%), Positives = 186/833 (22%), Gaps = 82/833 (9%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE---ITGKKSTILPIIKSL 81 LL L++ + PL P L + T V + Q LR I I+ + Sbjct: 25 LLQQVLIDWLKRHPLAP--LENETFLVQSNGMAQWLRLGLARPRSAQDGGLGIATGIEMI 82 Query: 82 GDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIK-DLYPESPLSLPI 140 + +L + P + + + + RL+ + N + L Sbjct: 83 LPARLQWQCYRAVLGTDFVPAEAPLDKDKLVWRLMRLLPNLIHTPSFLPLRHYIVTDQRP 142 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW--------------WLLAAD 186 LA +AD D + W ++ W Sbjct: 143 DDRRLYQLALRVADQFDQYQVYRADWLRHWQEGHDDLPAHETRLPDEQRWQPPLWRALLA 202 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLM 246 ++ + + I++ G + P ++ Sbjct: 203 DIRERQDDRDGIEFAAGRADLHTAFRKAASEQKARPEGLP-RRIVVFGLSSIAPQVLDVL 261 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + + + I + + + + ++ L + Sbjct: 262 AVASRWSQVIVCFLNPCEYYWGDIIDGHQLFAQRYQGRRPYKSAPNETAHAHPLLAAWGR 321 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD-----------------MRNTDILEN 347 R+ ++ L + ++ + D ++ Sbjct: 322 QGRDLMRLLDQFEENAQLAANPLTLTPFESTVVDSAKSSLLTLIQDDILKLRTPDELRAL 381 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 + A + E + L + + + ++ D +L Sbjct: 382 NRRLEPDQDHSLHFHIAHSPLREVEILHDQLLAAFEADTSLKPTDIIVMVPDMSLYAPAI 441 Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL----------NDFMAI 446 + I IS + L +LN + + Sbjct: 442 SAIFGRFGRDDPQHIPFSISDQAASGQVALINALEQILNLPTSRLLRSELLDLLGSPLLL 501 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A + S R M+ + Sbjct: 502 ARFGISETDLTTLHDWIDSAGIRWGLNAQHREAFGVPPGMEQNTWAFGLNRLLLGYLSGD 561 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCL---- 561 E + + ++ + L + ++W + Sbjct: 562 ENAIWDEIEPHPVMDGISAELVGKLAQLVQQLDKYTQRLSEKCTPTEWVARLRRLMTDFF 621 Query: 562 -----QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 QN ++ L + G + + ++ Sbjct: 622 SLSDTQNHLDSPEIQIEMDTLARLHNELERWLADCSVAGFENEIDIETVRHAWLNRLEPH 681 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + + + R + + + L G+++ +P+ N F + + Sbjct: 682 RLHQRFI-VGGVNFATLMPMRAIPYRHIYLLGMDDANYPRRQTPNDFDLMNGRYRPGDRA 740 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP---------TIASRWLQRLLVLGGTDF 727 + + L + R N + +L + + Sbjct: 741 RREDDRYL-FLEALLAARERLSISWVGRNINNNKIRPASVLVSQLRDYLDQFWAVPEPHS 799 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 ++ ++R+ + + + + S +E+ + Sbjct: 800 CSEIQTTEHPLHPFSRRYFSADNTDLFTFANDWRAVHDSTQGTSKTELPIWLP 852 >gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] Length = 783 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 88/745 (11%), Positives = 203/745 (27%), Gaps = 94/745 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 V T +A E+R +++ G ++ + + + L LN S Sbjct: 65 GQVLAITFTNKAAAEMRERVVQLVGPRAKAM-WVSTFHSTCVRILRNQASLLPGLNSNFS 123 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 RL+++ L K P LA+ I ++ E Sbjct: 124 IYDSDDS-RRLLMMIGKDLGLDTKRYSPRL-----------------LANGISNLKNELI 165 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 E A +E + A + L+ +G +A+++A + Sbjct: 166 GPEQAAAEASEASDEMATVIAQVYGEYQRRLRAA-NALDFDDLIGETVAVLQAFPQIAQY 224 Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHP-------NGAIVLPGLDCHIPTAIWNTIT 275 + I++ + A L+ + H + + D + T Sbjct: 225 YRRRFRHILVDEYQDTNHAQYVLVRELVGHHLEDHDGVPPSELCVVGDADQSIYAFRGAT 284 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ + +T L+ + + N +N + R+ Sbjct: 285 IRNIEDFERDFPDATTIL---------LEQNYRSTQTILNAANAVIARN----------- 324 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALI 392 T E ++ + ADNE +EA +A AL N A+ Sbjct: 325 ------TGRREKRLWTDAGQGELIVGYVADNEHDEARFVADEIDALTDRHGYNYNDIAVF 378 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 N +R ++ R GI + G+ + + L + D +++ ++ Sbjct: 379 YRTNNSSRALEEVFIRAGIPYKVVGGVRFYERREIRDIVAYLRVLDNPGDSVSMRRILNT 438 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 P G + V+ NT + Sbjct: 439 PRRGIGDRAEACVAVYAENTGVSFNEALQ----------AAAEGRVPMLNTRSEKCIASF 488 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + +L L + + + ++ + + D + L N+ Sbjct: 489 VQMLDDLRGKLDEELGDLVEAVLERTGYRRELEASSDPQDLAR-----LDNLNELVSVAH 543 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + L+ + ++ ++++ ++ + D + + + + ++ Sbjct: 544 EFSIDLANAQALAEESDEPVDEDIPDTGVLAQFLERVSLVADADDIPEEGS--GVVTMMT 601 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F + + G +G++P A L + + + Sbjct: 602 LHTAKGLEFPAVFVTGWEDGMFPHMRA--------------LGDPNELSEERRLAYVGIT 647 Query: 693 GTR-HLIYTRSLRENNIPTIA----SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 R L +R+ ++ SR+L+ + Sbjct: 648 RARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELIDWRRIEAPTPAYAAPGRMSSSGG 707 Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSF 772 RP P P + + Sbjct: 708 GGIGFGSPRPSPNRPGGGRNKPLMV 732 >gi|167035663|ref|YP_001670894.1| exodeoxyribonuclease V subunit gamma [Pseudomonas putida GB-1] gi|166862151|gb|ABZ00559.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas putida GB-1] Length = 1159 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 112/986 (11%), Positives = 256/986 (25%), Gaps = 108/986 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ ++ G ++ Sbjct: 21 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDLGGCGIAAAIDVQ 78 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + + +L + P VS + + RL+ + + + L+ Sbjct: 79 LPGSFMWQLYRS--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 135 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194 LA+ LAD+ D + W L ++ + ++ Sbjct: 136 SDLRKRYQLAERLADLFDQYQVYRADW--LKDWAAGEHVLNTARGERKALPPGNRWQAEL 193 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTKGP------IIIAGSTGSIPATARLMST 248 W L ++ + + + E + + P +I+ G + ++ Sbjct: 194 WRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALEALAG 253 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 +A + + H I ++ + Q++ L Sbjct: 254 LARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQSLHQHAHPLLA 313 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345 + R+ + L + + + + T+ Sbjct: 314 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNQLQDDILELRPLTETR 373 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 E P + A + + E + L + ++ + Sbjct: 374 ELWPPVDTAKDRSIRFHIAHSPQREVEILHDQLLARFSADATLRPRDVIVMLPAIDTYAP 433 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 434 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 493 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 A+FG E L +E +R N+ L ++ + V Sbjct: 494 VRARFGIRENDLPTLHRWIEGAGIRWGLNAEQRASLGLPAGLEQNSWRFGLRRMLLGYAV 553 Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 + E + L I + L + + +++ W + LQ Sbjct: 554 GVGVACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATVTQWGERLHALLQVF 613 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E + L + S G + +D + + Sbjct: 614 FLAEGERDEYLLMQ-LQDLRDSWLEVCETVGLQDPLPLAVVREAWLSGLDQGKLSQRFLA 672 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 673 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 731 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N AS + +L T + ++GQ Sbjct: 732 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIATGWHLAGMQQGQPAEPGE 790 Query: 743 RKLDYTTKQPHY-------------------------------KRPKPFPPLEAQPRTYS 771 + L T++ ++ +P P S Sbjct: 791 QLLHALTQEHPLQPFSARYFQKGSPLFSFAHEWQLLHQHGETDEQGEPGLPPYLGDEALS 850 Query: 772 FSEIKQLINDPYAVYARRILKL--DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 +++ + P + + LK+ + + D + TL +E + Sbjct: 851 LTQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASESLLGAALAEPD 910 Query: 830 EINHLMKQIIDSHFEKENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK 888 ++ LP + + L+ +++ V Sbjct: 911 NAEQALRAQARRLQACGLLPLAGFGESLQSELIEPLPDLLQRHQQLLQRW-PQLVEGALP 969 Query: 889 MAIESIGIHLTGFADRIDLLKSGFVD 914 + E L G+ R+ + + Sbjct: 970 VHFEHAQHRLEGWLGRVFQAQDQSLL 995 >gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] Length = 889 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 115/929 (12%), Positives = 233/929 (25%), Gaps = 114/929 (12%) Query: 36 YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95 + L V T +A ELR E G+ S D A+ L Sbjct: 21 LEHLEQHPPQRVAAVTFTNKAAAELRERIFEALGRG--------SFYDFTPSPALAERLA 72 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 Y + + I I + L + + P I PA A Sbjct: 73 DYQVRVLEAPIGT-------IHSFFGYLLRLTAPMLGLDPHFEVIDPATARAWFLEEVRN 125 Query: 156 IDIIETEEKKWEDLHALKNE----------KYGMWWLLAA-DFLKIASKYWTERLVELNA 204 + IIE E AL + + K W RL Sbjct: 126 LAIIEGAEVDETVTTALVELFKRRSISEAFEGTGDASRSLVAGFKKVYARWLTRLGGRYL 185 Query: 205 SSPVGYQIALM---RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPG 261 + AL EA ++ G +++ + P AR+ + G + Sbjct: 186 DPSEIERRALALIRHPEALERVRSRLGVVLVDEYQDTAPIQARVFEALEEA--GVPIEVV 243 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 D + + H + ++ L + L + N Sbjct: 244 GDPKQSIYAFRDADVEGF--------REAHRRARENGNVETLTVSYRHPPALADFLNAFT 295 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS 381 + K+F + +++ + ++ I D EA +A LR Sbjct: 296 SAEAALGKAFTAEEAPEVKPGREGDARVELITVTPGDGKATLDALRNGEARLLARELRRL 355 Query: 382 LDENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 DE ++ R+ + L G+ + L L L Sbjct: 356 HDEEGYDYGQMLVLFRRRHQLPPLLRALRGAGLPFAVVGLRGLYEEPEVRELYHALRLAT 415 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 ++A + P + A++A E + L R+ Sbjct: 416 GEAPRDSLAVFLSGPFGGLTLGQVREVLAQDAPESYLTLH-------HPEAAERLLRLRA 468 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 +RL E +D + + T + + Sbjct: 469 DAEKMRPAEALTRLIEAPTAKGPPFLDLLE--LEMADTVLYVLGRIEHTRTYPEAVATLE 526 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETV 618 + E Sbjct: 527 SFRSGG--------------------------------------------------EEEA 536 Query: 619 KPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + ++ ++ L +++ + + + + + L + Sbjct: 537 SLARLGGDAVRVMSAHAAKGLQAPVVVIFDADRTFNGNS---DELVIEPRTGRVALNGED 593 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 Y A G H + +L ++ I S ++ + G + Sbjct: 594 AYESIAQALKARKEGEDHRLIYVALSRSSERLIVSAAVKEPRKGSWLHHLTEVLNLGSKF 653 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 L + ++ P++ + T + + R + D Sbjct: 654 EHRNVTLAEIALEEPIEQEAATLPVDPELATPLPPAPPAVSSPTALKAERELEVPDPEEA 713 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIW-R 857 + DP+ G + ++ E I++ + + PE+ ++ + E+ +I Sbjct: 714 WPADPEARLLGRIVGILVHEGIQRDWDPDDPEVLLALE--GEQVLEEVPADRRPAVIEEV 771 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 ++ + L E +P + + G DR+ + + D Sbjct: 772 ATLLRVYRTLLGSAIPSLEEREVDLAELPLVYPLGATAWE--GVIDRLYRVGD-VWYLED 828 Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKA 946 YKT E QL+L A++ Sbjct: 829 YKTDREVHPER----YHSQLALYREAVRK 853 >gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] Length = 1349 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 80/841 (9%), Positives = 187/841 (22%), Gaps = 110/841 (13%) Query: 46 SVTIYVPTKRAIQELRSEF---IEITGKKSTI----------------LPIIKSLGDVVE 86 V T++A ++L + + P++ + Sbjct: 79 RVLGLTFTRKAARQLGERVRGRLRRLAGSPLLDELDPSGRRRAAVLTTEPVVLTYHAYA- 137 Query: 87 EKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAI 146 L+ + L PV RLL + + +DL + + S + Sbjct: 138 ----GRLVGEHGLRLPVEPGVRLLTETAAWQLAHRVVSAWTQDLDTDKIPTTITS--YLL 191 Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGM---------------WWLLAADFLKIA 191 LA L + + E E L AL L Sbjct: 192 SLAGELGEHLVEPEQLLAHAEHLCALIEHAPKAPRQKDALPEKLQEIVDAQRLRVALLPL 251 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLM 246 + R R H + G +++ + A L+ Sbjct: 252 LDAYRARKRRDAVLDFADQMSLAARLATGHPEVVEGERERYGAVLLDEYQDTGHAQRVLL 311 Query: 247 STVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK 306 + + V D W + + + Sbjct: 312 RALFGDGDPMPVTSVGDPAQAIYGWRGASAANLPRFREDFP------------------- 352 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 D L + + P + + + + + Sbjct: 353 PADKYELLTSFRNPPEVLHLANAVSGPLRAAGLDVAPLRHREGVEPGDVRIGLFPDVRAE 412 Query: 367 EREEAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 A ++A R +D + + +A++ R+ + L G+ +++ L Sbjct: 413 LEWLADTVAEQWRAHVDTSDEPPTAAVLVRRRSDMPAIAAVLRDRGLPVEVVGLGGLLDE 472 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 LTS L + A L+ +++ L+ +A + S D Sbjct: 473 PEVRDLTSALRVLVDPLAGTAATRLLTG--SRWRIAAFDLAAMWQRARDLAGAPARKSPD 530 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L L + + A + Sbjct: 531 EDPLSVLADALPGEHSEQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRLTQPL 590 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + T L R + + + ++ + + ++ Sbjct: 591 PELVADVERTLLLDIEAVARPGGVGRAHLDAFADVVSDFAAASPAATLPA-------LLD 643 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ DG + + ++ ++ L + + + + + V+P +L Sbjct: 644 YLRTAEHAEDGLAPGEVEVVDNRVQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWL 703 Query: 665 ----------------SRVMQSDLNLKTAEKYIGQAAHD---------------FEMANG 693 ++ E H + Sbjct: 704 KSVTELPAALRGDAQDLPELRVPGGANRKEVEEALDRHADEFEERRLVEERRLLYVALTR 763 Query: 694 TRHLIYT---RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + H + P S +L L + T + Sbjct: 764 SEHSLLVSGHWWGETGATPKGPSAFLTELREVVTTAEHPPADVAHWAPAPGPEDENPLAA 823 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 + + P + + + + D A + + + GT Sbjct: 824 KAKTAQWPADPLGSRRDAVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGT 883 Query: 811 L 811 Sbjct: 884 A 884 Score = 76.1 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 85/854 (9%), Positives = 175/854 (20%), Gaps = 43/854 (5%) Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 D L ++ + + L +W+ A+A+ + Sbjct: 487 DPLAGTAATRLLTGSRWRIAAFDLAAMWQRARDLAGAPARKSPDEDPLSVLADALPGEHS 546 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 + + A + A + ++ E + ++ + + + Sbjct: 547 EQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRLTQPLPELVADVERTLLLDIE 606 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR-LMSTVANHPNGAIVLPGLDCHIPTAI 270 ++ + S AT L+ + + L + + Sbjct: 607 AVARPGGVGRAHLDAFADVVSDFAAASPAATLPALLDYLRTAEHAEDGLAPGEVEVVDNR 666 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 +T S H + + V L + Sbjct: 667 VQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWLKSVTELPAALRGDAQDLPELRVP 726 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA-IALRMSLDENKKKS 389 D ++ + L A E ++ ++ + K S Sbjct: 727 GGANRKEVEEALDRHADEFEERRLVEERRLLYVALTRSEHSLLVSGHWWGETGATPKGPS 786 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 A +T R + + + A P ++ D + Sbjct: 787 AFLTELREVVTTAEH--PPADVAHWAPAPGPEDENPLAA----KAKTAQWPADPLGSRRD 840 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQ 509 A R E + + ++ D Sbjct: 841 AVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGTADAGEEWVPPDDEWLPS 900 Query: 510 SRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEH 569 T +++ + + D Sbjct: 901 DEEEPPPPPEGPDGDWAEWTTPDEPWDDGTPPDASEAAATAPEHGPEVELRSSAPAADPT 960 Query: 570 RKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + E E GS + T + P S Sbjct: 961 SESGPEAGLESESEPEPEPEPEPEQGSAPTHGSEPGTGPETVIDSESAPHPGAGAVSAAR 1020 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + DT T S E Sbjct: 1021 LSAGGGVSATLPDTDTDTDTAIDAALAATPLGFAPEGDSVSPEGADLPEGSPAADPIPAA 1080 Query: 690 MANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTT 749 L+ P A L + + W R +D Sbjct: 1081 PVVPAADLV-------PADPVPAEPVLPTDPEIVLPTDPEISDPDAADPEGWARDVD--V 1131 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 P S S++ +L DP + +L F +P RG Sbjct: 1132 LLAERAAAMDRRERVLLPEHLSVSQLVELATDPDQLA----RRLRRPLPFPPNPLAR-RG 1186 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE 869 T FH + E+ + + + Sbjct: 1187 TAFHTWLERRFGAVRLLELDELPGAADE------------DAVPDGELGRLQE------A 1228 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETA 929 + V +P + ++ G+ + G D + G + D+KTG P+ + Sbjct: 1229 FLASAWADRTPHAVEVPFEAEVD--GLAVRGRMDAVFADPDGGWTVVDWKTGRVPEADRV 1286 Query: 930 QKLIDPQLSLEAAA 943 + QL+ A Sbjct: 1287 PS-LSVQLAAYRLA 1299 >gi|224372487|ref|YP_002606859.1| hypothetical protein NAMH_0442 [Nautilia profundicola AmH] gi|223589596|gb|ACM93332.1| conserved hypothetical protein [Nautilia profundicola AmH] Length = 722 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 62/424 (14%), Positives = 147/424 (34%), Gaps = 79/424 (18%) Query: 607 DIITRLIDG-ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I+ L++ + + + ++G LESR + ++ ++ N+ P + K+ FL+ Sbjct: 365 EILHFLLERFKNLTFDDVAGGKVTVMGVLESRGMKYEGAVIVDFNDEYVPNVSDKDYFLN 424 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFEM-ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 +++ + L T + + + + + SR+L L + G Sbjct: 425 SIIRKNALLPTRKDKESLQKNYYYNILLNAKKVKIAYVKN---EEKEPSRFLYELGLSFG 481 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + R + Y + K+ + +R +P + +++K L+ P Sbjct: 482 EN-------RDEYYSEAVYKISKPNFYEYNER-------FEKPEILTPTKLKTLLECPMK 527 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 Y +L + + G+ HN++ E++K++ N +M++++ + + Sbjct: 528 YYFSYVLNIKNDDEKEY------FGSKLHNVLQEVLKQKPRSPEDYYNRIMQKLLSNVSK 581 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI---GIHLTGF 901 KE I W + + + + EE +K++ + + + L Sbjct: 582 KEYF--EIKSNWDEKIKQFA--YRDFEELS----DKVYTEVS----LPNKKYKNFLLQAR 629 Query: 902 ADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 ADRI + + I DYKT + Q + A ++ Sbjct: 630 ADRI--IGNK---IYDYKT----SSKQDYLKDLTQAEFYKYLMPD-----------AEIY 669 Query: 962 YIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQ 1021 + + I + ++K L E + ++ +I+ + Sbjct: 670 FWDINTSQLIK--------------VDPAIKKLEEKIDSIE-----YITKRAEEKDKCKY 710 Query: 1022 SEYD 1025 EY Sbjct: 711 CEYK 714 >gi|157375076|ref|YP_001473676.1| exodeoxyribonuclease V, gamma subunit [Shewanella sediminis HAW-EB3] gi|157317450|gb|ABV36548.1| exodeoxyribonuclease V, gamma subunit [Shewanella sediminis HAW-EB3] Length = 1187 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 110/1013 (10%), Positives = 247/1013 (24%), Gaps = 145/1013 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 AL E P PLL+ + V + LR E + + L Sbjct: 11 EALSAQLATELQTPIPGMPLLMPE-QVLVQSPGMSTWLRLEIARQNKIAAALE---FPLP 66 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL-------PDIIKDLYPESP 135 + LL + +L L+ + E+ Sbjct: 67 SSFIWQLCHTLLPDVPKENAFTKPSMTWKLMELLPELLQIDEFAPLNNYLNAANCPDEAT 126 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN------EKYGMWWLLAADFLK 189 +LP P L +ADI D W + L Sbjct: 127 EALPEDPLKLFQLCGQIADIFDQYLVYRPDWIAAWEANEPTLPPKDDKLSPAQAWQPILW 186 Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMS 247 A + + + +L A + + + G + P T ++ Sbjct: 187 RALIEFNNLRLNKSRYHRANLHQSLFDALDDPDTCLDGLPRRLFVFGISSMAPQTLDVLY 246 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT-----SSNTTYSTHPQYSLAKLLDF 302 +A + ++ H I + + + + L + Sbjct: 247 HLAKRIDVIMLNLSPCQHYWGDIVDPRLRARMALEYANRNKLEALWEDKLEVGNPLLANN 306 Query: 303 LDIKREDVKRLGNVSNEMYG---------------------RSMVISKSFLPPDTSDMRN 341 + RE + + + E + ++ S + Sbjct: 307 GKMGRELLDLILELPEEHTNFNFECYQDPLESAPQTLLRGVQHDILELSTRNRSLGPDAS 366 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---------KKSALI 392 + + + K + L + E ++ L L K ++ Sbjct: 367 LYLTLDDRRVLTKADDSLTLRSCHSPLREIETLHDHLLEMLSREPADPSDPLLAKDIVIM 426 Query: 393 TADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 D + I I+ + + +L I Sbjct: 427 LPDVAAYAPYIDAVFSAKQGAHYIPYAIADRGAAQESPLINSFLHILAINQSRFALTDIL 486 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 +++ P F E + G + D + + + Sbjct: 487 GILEVPAVLRRF-ELDDEALSMIRHWLEQAGVRWGRDENSRAAQSMPAFDKNSWAFGIKR 545 Query: 508 WQSRLSEEDKELA-----------VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + D + + + + T + N SI + Sbjct: 546 LILGYAFSDDAELYHDTLLVEGIEGQSAQALGKLLNFIETLDEYQQQLAQNCSIEERMSQ 605 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L++ + + L + + +S L +++ ++G N + + Sbjct: 606 LAQLLEDFYEVDDEEQQQL--QAIREAISKLKTELADSGQVTPLNTQVLQNWFNSTLSES 663 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 V + ++ + R + F + L G+N+G++P+ F Sbjct: 664 RVGQRYLAG-SVNFCTLMPMRSIPFKLVCLVGMNDGIYPRVQHPVGFDLVAQFGPRKGDR 722 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTR--SLRENNIPTIASRWLQRLLV------------- 721 + + + + + L + +N I S + L+ Sbjct: 723 SRRLDDRYLFLEAILSAREQLYISYIGHSERDNSERIPSMLVSELVEYCQLCYLPEGDLH 782 Query: 722 ------------------LGGTDFFDNLKKR------------GQCYLDW---TRKLDYT 748 L +R Q Y R D + Sbjct: 783 NPDNEPDIPAIEKAIHKQLLIEQPLQPFDERLYLPDNGDDPQLKQSYSAQWCPARTSDNS 842 Query: 749 TKQPHYKRPKPFPPLEA------QPRTYSFSEIKQLINDPYAVYARRILKLD-------F 795 + P + P E+ + S + + +P + R LK+D Sbjct: 843 AETPRFIEPGQKIEQESLASPCVEENELEVSALIRFFRNPAQYFFNRSLKVDLGLNIQAD 902 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + +R L N++ I + + E+ +K + + + Sbjct: 903 DNDEPFSLNALERYKLQANLLDNAISQGLELPGEELLQRLKASGE--LPLKPFDDLLLNQ 960 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-----GIHLTGFAD 903 + H + + + + Q S++ +P + + + L G D Sbjct: 961 YLHDIKPLIGRAIYLQGENQHSLDI---ELPFALGDGTGNTITEPVTLVGRID 1010 >gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] Length = 1124 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 80/667 (11%), Positives = 180/667 (26%), Gaps = 66/667 (9%) Query: 46 SVTIYVPTKRAIQELRS--EFIEITGKKSTILPIIKSLGDVV------------EEKFTA 91 V T++A ++L S +L I G + + Sbjct: 70 RVLGLTFTRKAARQLGERVRARLRRLAGSGLLERIDPSGALRATVVAGEPTVLTYHAYAG 129 Query: 92 DLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKN 151 LL + L PV RLL + + DL ++ P A + LA Sbjct: 130 RLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDNDL--DTDRVPPTVTAQLLALAGE 187 Query: 152 LADIIDIIETEEKKWEDLHALKNEKYGMWWLL------------AADF---LKIASKYWT 196 L + + E + E L + A F L + + Sbjct: 188 LGEHLISTEQLGQYTEWLCEIIENAPRAKGQRASLPVKLQEVLAAQRFRLALLPLVEDYH 247 Query: 197 ERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPIIIAGSTGSIPATARLMSTVAN 251 R A + + + G +++ + A L+ ++ Sbjct: 248 RRKRAEGALDFADQMSLAAQLADGYPAVVAGERERYGAVLLDEYQDTGHAQRVLLRSLFG 307 Query: 252 --HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 V D W + + +++ + A L R Sbjct: 308 GVDHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRRGEERLETAHEFGLLTSFRNP 367 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + L + DI +P+++ V Sbjct: 368 PEILELANAISEPLRQRGLGVERLRARDGAGPADIAVALLPDVRAEREWV---------- 417 Query: 370 EAISIAIALRMSLDENKKK--SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A ++A + + K +A++ R + E+ G+ +++ L Sbjct: 418 -ADAMAQRWHAEKEASGKPPTAAVLVRRRADMAPIAAEMRMRGLPVEVVGLGGLLDEPEV 476 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + L S L + A A L+ A++ ++ + + Sbjct: 477 ADLVSTLRVLADPLAGSAAARLLTG--ARWRIAAADVAALWRRANELTSPEPRAKEGEEP 534 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 A + P R S E L + L Sbjct: 535 ELVAERAEQAGLIDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQSLPEL------ 588 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++D + + ++++ +L + + + +++ T + + + +++++ Sbjct: 589 --VADVERTMLLDVESLARPGSAGRAHL---DAFAEVVTDYAETAPTATLL--SFVDYLN 641 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 DG T + +L ++ L ++ + + L V+P + +L Sbjct: 642 TAAHAEDGLTPGEVQVVPDRVQVLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTS 701 Query: 668 MQSDLNL 674 +L Sbjct: 702 TALPAHL 708 Score = 70.0 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 97/804 (12%), Positives = 195/804 (24%), Gaps = 70/804 (8%) Query: 196 TERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 E L NA S Q L I +A + +A + Sbjct: 368 PEILELANAISEPLRQRGLGVERLRARDGAGPADIAVALLPDVRAEREWVADAMAQRWHA 427 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR--EDVKRL 313 G + L LLD ++ ++ L Sbjct: 428 EKEASGKPPTAAVLVRRRADMAPIAAEMRMRGLPV-EVVGLGGLLDEPEVADLVSTLRVL 486 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + ++ + + E+A Sbjct: 487 ADPLAGSAAARLLTGARWRIAAADVAALWRRANELTSPEPRAKEGEEPELVAERAEQAGL 546 Query: 374 I------AIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST---- 423 I R S + ++ L L RR+ L +++ + + + + Sbjct: 547 IDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQSLPELVADVERTMLLDVESLARP 606 Query: 424 -TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNS 482 + + L + + + ATL+ + V + ++ Sbjct: 607 GSAGRAHLDAFAEVVTDYAETAPTATLLS---FVDYLNTAAHAEDGLTPGEVQVVPDRVQ 663 Query: 483 YDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKN 542 + + + + R S + L H+ L + Sbjct: 664 VLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTSTALPAHLRGDAADLPKL--QIS 721 Query: 543 STCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANA 602 + + +L DE R+L + + L E+ + K + Sbjct: 722 EGYDRKEVQEALELHEEGFVAREADEERRLCYVALTRSERALLVSGHWWNESSTRAKGPS 781 Query: 603 IEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP 662 I +I + + + + + Sbjct: 782 IFLTEIAEV------MNEADPPLGVVDVWAEEPEEGDENPLVA----------DSRTAQW 825 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVL 722 + + + T + + E +++ + Sbjct: 826 PVDPLGDRRSGVATGVELLLAEMAALEEEPEPEPEAEPLPAADDDEIPLPPEPEDDYPPD 885 Query: 723 GGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 D + W D R + A P S S++ L +D Sbjct: 886 DEYFEDDEDVIDPEDPDGWAA--DTDVLLAERARSQSTVDRVALPAQLSVSQLVDLASD- 942 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSH 842 A + + P RGT FH+ + + D Sbjct: 943 ----ADALAQRLRRPLPLPPNTFARRGTAFHSWLEQRFS-----------------GDRL 981 Query: 843 FEKENLPPHIDIIWRHL--FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 E ++LP D+ F + +F E + + V +P IE GI L G Sbjct: 982 LEIDDLPGAADVGEAPDTDFEALQEAFENSEWADR---VPLAVEVPFSADIE--GITLRG 1036 Query: 901 FADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANL 960 D + G + D+KTG P E + QL A + ++ +V Sbjct: 1037 RMDAVYADPDGGWTVVDWKTGSVPS-EERLPALAIQLGAYRLAWA--ALKKVPVERVRAA 1093 Query: 961 F-YIRLKQKFKIDCITNDKKKYSA 983 F Y+R + + + + S Sbjct: 1094 FHYVRHGHTLRPADLLDAEGLRSL 1117 >gi|313115008|ref|ZP_07800501.1| hypothetical protein HMPREF9436_02365 [Faecalibacterium cf. prausnitzii KLE1255] gi|310622699|gb|EFQ06161.1| hypothetical protein HMPREF9436_02365 [Faecalibacterium cf. prausnitzii KLE1255] Length = 435 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 103/353 (29%), Gaps = 43/353 (12%) Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L T+ + L R+++ + L + S S++ Sbjct: 13 LTDTERASLTEVLRLPQTDAPRGLALLRRMEEDPPRQVNDLSALSGLLGQRL-RISPSQL 71 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN-------- 827 ++ Y + + +L L + + GTL H ++ + + + Sbjct: 72 EKYYTCRYGYFLQYVLGLKPRR--RAELSADQSGTLMHWVLQMALDPHPDADNPCAGLAP 129 Query: 828 ----TPEINHLMKQII-DSHFEKENLPPHID-IIWRHLFHKISHSFLEHEEKIQSS--IE 879 + + ++ D + ++ K S L + Q Sbjct: 130 FLELDDDAMAELASLLVDKYAKRYLPEDTARFAYLLSRLKKSMTSLLCYLRDEQKQSCFH 189 Query: 880 KIFVNI---PAKMAIE--------SIGIHLTGFADRID--LLKSGF--VDITDYKTGDNP 924 + + A+ + L G DR D + + G V + DYKTG Sbjct: 190 PAACELRIGSGEDAVPGQVYHLSDGRTVQLVGTVDRADEWVEEDGTRWVRVVDYKTGTKK 249 Query: 925 -KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 + +D Q+ L +L + + A + Y L + + Sbjct: 250 LNLKEVYCGLDCQMLLYLFSLTRDKSGRFTGAEPAGVLY--LLADPAPKTTNRQQAQQDV 307 Query: 984 DELSEKSLKNLIEIVTLLQNGEQ------PFISHLRLSEKSNIQSEYDHLARV 1030 + +++ ++ + E + + + + + +++ L R+ Sbjct: 308 QYELDGLVRDEQKVFDAMDADETGRYLPFGYRNGVPSPSQKDKRADIAKLNRI 360 >gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] Length = 1123 Score = 98.1 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 70/806 (8%), Positives = 188/806 (23%), Gaps = 101/806 (12%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--------KGPIIIAGSTG 237 +F ++ + + + + + I++ + Sbjct: 335 EFARVFLTAYDRAKALRGWLDFDDLILRARQLLTDPAVAAWVLFRLDGGIDHILVDEAQD 394 Query: 238 SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + P +++ +A + D + + + Sbjct: 395 TSPVQWQVIERLAQEFTSGQGARADVTRTIFVVGDKKQSIYSFQGADPDEFDRMKGDFAT 454 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 H + ++ ++ + ++ + + S + + + + Sbjct: 455 RLHATGQPLQDME-MEYSFRSSSAILDLVDHTFANSRDSGFTPEQGHKAFKSDLPGRVDL 513 Query: 349 IPNIQKCFSD--------VALIEADNEREE-AISIAIALRMSLDE--------------- 384 P I+K D V + A++ A IA+ +R +D+ Sbjct: 514 WPVIEKPDQDEDPEWHMPVDVKAANDPATLLARQIALTIRRMVDDKQPIPDKASPSGLRP 573 Query: 385 --NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 L+ L + E + I + + + L L +LL+ + D Sbjct: 574 IRPGDILILVQRRSTLFHELIRECKTQNLPIAGADRLKVGAELAVKDLAALLSFLATPED 633 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 +++AT ++ PL + + + K + ++ VLD + + + Sbjct: 634 DLSLATALRSPLFGWSEAQLFDRAHKR-TQRYLWAALRDRASDFPETMAVLDDLRRKADY 692 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 R+ LL + + + Sbjct: 693 LRPYDLIERILTRHDGRRKLLARLGAEAEDGIDALLMQAMAYEQR--------------- 737 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + +W E + + + + + ++ ++ + Sbjct: 738 ---AVDSLTGFLVWMETDDLEIKRQMDSAGNRVRVMTVHGAKGLEAPVVILPDTAKRDIR 794 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + P + + + + + Sbjct: 795 IRDQI---------------------TTSNGTPFWRSASGEAPAAIVRASDAARDAQRAE 833 Query: 683 QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + + + + A + + + L Sbjct: 834 RDRLLYVAMTRAETWLIVAAAGDLGKNGEAWYEKVQAGLQAAGATAHDFDLGQGLRLQHG 893 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + P P + + P + + L + Sbjct: 894 DWAGTVSDPPADATHSTTPLPAHFQQPAPPPVLPPETLKPSDLGGDKAL---PDERGLDE 950 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 RG H ++ L + L+ N + L Sbjct: 951 DAAKRRGRQIHRLLEFLPTVPQSDWPETAGTLL----------SNGSDAAEGEELRLLLA 1000 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIES-IGIHLTGFADRIDLLKSGFVDITDYKT- 920 + L +P ++++ G + G DR+ + V D+KT Sbjct: 1001 EAEKVLTKPSLQFLFQPDALCEVPVSASLDALGGRRIHGIIDRLLISPD-RVLAVDFKTN 1059 Query: 921 -GDNPKKETAQKLIDPQLSLEAAALK 945 G E + Q+ A AL Sbjct: 1060 AGVPDTAEHVPTALLRQMGAYANALA 1085 >gi|332974541|gb|EGK11461.1| exodeoxyribonuclease V gamma subunit [Kingella kingae ATCC 23330] Length = 1146 Score = 97.7 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 86/742 (11%), Positives = 190/742 (25%), Gaps = 88/742 (11%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V ++ + + + + + + + + + + L + L+P S++ + Sbjct: 35 ILVQSQGMRRYINQYWAQHSPIAANL--HFELPAQLAWQLMREALPNAPKLSPFSSDVMQ 92 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW-- 166 L +L + + +A LA+ LAD+ D W Sbjct: 93 WRLL-QLFQSRHFAEDSELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIE 151 Query: 167 --------EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS-SPVGYQIALMRA 217 +L ++ W A W E L + + Q LM + Sbjct: 152 AWSNQQNVAELSQREDCAQEQQWQAAI---------WRELLRDEQRAPHRAQMQRVLMDS 202 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW------ 271 A ++ I++ G T P+ +L+ +A + I + Sbjct: 203 LANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDVHIFALNPSAMYWGDLLEPAQIL 262 Query: 272 ---------------------NTITEKSTNITSSNTTYSTHPQYSLAK----LLDF---- 302 + + H Q++ LL Sbjct: 263 QQTDDVDLSLQGHPLLASWGKQGRDFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQYQ 322 Query: 303 -----LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L + D L + + + ++ E K S Sbjct: 323 IQQLVLPEQAHDDDWLAQHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADS 382 Query: 358 DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL----TRF 409 + + A + E + + ++L + A++T + + + Sbjct: 383 SLHIHSAHSPLRELQILKDRILLALAQNPSWQPHDIAVLTPNIEPYAPFIDSVFGEYSDA 442 Query: 410 GINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH----PLAKFGFPEKYLS 465 + ++ L L+ + + + L+ + L Sbjct: 443 PLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVLALLNTEPVLQQWHINRADLPLL 502 Query: 466 R-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQS----RLSEEDKELA 520 A L + D +L + + + Sbjct: 503 HSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPHASH 562 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + + + + K S++ W + Q + D + Sbjct: 563 PDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAA--LQT 620 Query: 581 GKTLSSLFSKIIE-TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 + + + E ++ I R +D T + + R L Sbjct: 621 WRKALDDWQEQAEIAQFSEPLSSPIACQHIRRSLDEPT--DAGLLRGGITFCSMVPMRSL 678 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIY 699 F L L GLN+G +P+NT PF Q ++ + + L Sbjct: 679 PFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDDRYL-FLEAILSAREQLYL 737 Query: 700 TRSLRE--NNIPTIASRWLQRL 719 + R+ ++ S L L Sbjct: 738 SYIGRDIRSDAERAPSTLLSEL 759 >gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli] gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli] Length = 722 Score = 97.7 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 73/702 (10%), Positives = 174/702 (24%), Gaps = 129/702 (18%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLN 100 L + T +A E+R + K+ + + + S L Sbjct: 55 SLHHILAVTFTNKAAGEMRQRLENLLDIPMKTMW---VGTFHGLAHRLLRQHWEAS-GLP 110 Query: 101 PPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 I + + L + D +P + I+ + Sbjct: 111 QSFQIIDSD----DQYRMIKRILLSLNLDEAQWAPKKVQW--------------FINQQK 152 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 E + + + + L + + E + + Sbjct: 153 DEG-----IRSHHVKNSNDPYTKT---LVRLYQSYEEVCDRNGVIDFAELLLRSYELFIK 204 Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 H +G I++ + + +++ N + D W Sbjct: 205 HPEILHYYQGRFQHILVDEFQDTNRIQYAWLKLLSSGKN--YFMIVGDDDQSIYGWRGAR 262 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 K+ + + + L+ + SN + + Sbjct: 263 VKNIYDFTHDFPEHQ---------IIRLEQNYRSTGVILAASNALITHN----------- 302 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL--DENKKKSALIT 393 L K+ + + +AL A N+ +EA I ++ L + + A++ Sbjct: 303 ------DGRLGKKLWSSRGDGDKIALYGAFNDLDEARFIINQIKQGLKKEVHANDIAILY 356 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R ++ L I I G+ + L I ND ++ P Sbjct: 357 RSNAQSRVLEEALIHAQIPYRIYGGLRFFERAEIKDALAYLRLIANRNDDPGFERVINTP 416 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G R + + +L L + AT N Sbjct: 417 TRGIGDQTLQKLRLEARTQ-----------------ALSLWQAATYLLNQ---------- 449 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 L + + + S+++ T+ + Sbjct: 450 -------QCLPSRAANALAHFIQLIDKMDEEIKTFSLAEQTEHV------LYQSGLFNHY 496 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCI---KANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 E G+ ++I ++ + + E+ + + + Sbjct: 497 KKEKGERGQARIENLEELINATRQFIPEESTLSILSSFLAHVALEAGEHQANEQHACVQL 556 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + ++ L F + L G+ EG++P + L+ + + + + Sbjct: 557 MTLHSAKGLEFPWVFLCGMEEGLFPHH--------------LSHEEPGRLEEERRLCYVG 602 Query: 691 ANGT-RHLIYTRSL----RENNIPTIASRWLQRLLVLGGTDF 727 R L + + SR++ + + Sbjct: 603 MTRAMRKLFLSYAEVRRLHGTESHHRPSRFISEIPKELVEEI 644 >gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli] gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli] Length = 1135 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 89/764 (11%), Positives = 192/764 (25%), Gaps = 84/764 (10%) Query: 229 PIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSN 285 +++ + P RL+ + +G + D + Sbjct: 410 HLLVDEFQDTSPLQLRLIEKLITGWEKQDGRTLFLVGDPMQSIYRFRKAEVCLFLEVRQR 469 Query: 286 T--TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTD 343 ++ P I + + RS I P + ++ Sbjct: 470 GIGSFPLQPLTLRVNFRSTSGIVDWVNHSFSQLLPDNPNRS--IDAIGYSPSDAYTCSSQ 527 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK-KSALITADRNLARRV 402 ++ Q V A EA I ++ E+ AL+ R+ + Sbjct: 528 AEKSVFTYWQLAEDSVLGEIA-----EAEQIVTTIQKIKREDPSGSIALLVRSRSHLHPI 582 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 L + I L+ L SL A+ D ++ L++ P + Sbjct: 583 LPRLRQAKIPYQALEIDSLAEKSALQDLLSLTRALHHFGDSISWLALLRSPYCGLSLRDL 642 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 Y + + + + + L Q+ VP + L ++ + Sbjct: 643 YQI----IQWNDKNKKTTIWEQLKEFEKIPLSLKTKQRLRRIVPVLKYSLQQQGRVSFPQ 698 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 V + T + + D + + EE Sbjct: 699 WVKQTWLYLGGPTTLSHWEE-------MDDIETYFNFLATKLKTEGDSFDFLRIHEELQT 751 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + S + + + ++ ++ G + E L L + + +L+ Sbjct: 752 LYTQSTSHDTHAVQIMTLHKAKGLEFDHVILPGLHRSNRPEPYPLL--LYSEQRSVLHQK 809 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR---HLIY 699 +L + + N L+ + + + T+ HL Sbjct: 810 NFLLAPIPIDPQEPDLIYNYLLAEEQKK--------NQAERIRLLYVACTRTKKSLHLFG 861 Query: 700 TRSLRENNIPTIAS--RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 T + L L + L K+ Sbjct: 862 TFTQDSAGKLQSPDKQSLLHHLWPILSIKSEHLLSVSKSRVNQKNSTTQTVLKRLPATWQ 921 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 P P+++ + + + + GT+ H ++ Sbjct: 922 SPVSPMKSFEIPTT-------------------MPSQPVVYHWHSHTERIFGTVIHRLLY 962 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ-S 876 ++ + + +IN + ++ L + + Sbjct: 963 QISQDGLEHWIKKINQS-QTLLAGLLAHYGLLDSEIPNVLITLKRCLEKVIACPRARWIL 1021 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGF-----ADRIDLLK-SGFVDITDYKT----GDNPK- 925 S + + + L G DR + + I DYKT G+ P Sbjct: 1022 SQQHWMAESEYAIT-----VILHGKCENFIIDRTFIDPATCSRWIIDYKTTNYQGNQPDL 1076 Query: 926 --KETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQ 967 KE Q+ + QL+ A +F +K+ Y L Sbjct: 1077 FLKEAKQRHQE-QLNGYA-----RAFLHDKPKKICCGLYFPLTA 1114 >gi|304317473|ref|YP_003852618.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778975|gb|ADL69534.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1053 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 93/296 (31%), Gaps = 39/296 (13%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S + + P+ + +L L F + + G+L+H ++ + K ++ Sbjct: 751 LSASSLNSYVVCPFKFFIETLLNLHVSDEFIE--SKKSIGSLYHEVLMKYYKDNLD-LYD 807 Query: 830 EINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 + +IID FEK + + + L + L + K + + Sbjct: 808 VNEDRLGEIIDESFEKITGIENDIIFDKIKQEFYNVVFQLVKDDISNRLYYYNKTGAELI 867 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGDNPKKETAQKLI 933 +M G G DRIDL ++ G I DYK+G + + Sbjct: 868 PSIFEKKFEMKDHYGGNIFHGKIDRIDLERNIDGKFTGKYVIYDYKSGGIDGIRQCIEGL 927 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVA--NLFYIRL--------------KQKFKIDCITND 977 D QL A++ + + L Y + K FK + D Sbjct: 928 DFQLPTYYMAVENILKEEFNIEYPKCLGLLYYSIEKVKRNGIVLALYKKDLFKGNSGPRD 987 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLR--LSEKSNIQSEYDHLARVA 1031 + + ++ + + + + + E S+ Y + R Sbjct: 988 VVGENNFNVIIDWIE--KKGIENIDKIKTGIFNLPDECPFENSSFNCAYKSICRYD 1041 >gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra magnipapillata] Length = 872 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 66/699 (9%), Positives = 159/699 (22%), Gaps = 97/699 (13%) Query: 47 VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102 + T +A +E+ + + + I + + A + L Sbjct: 121 ILAVTFTNKAAKEMMTRLSAMLPVNVRGMW---IGTFHGLCNRFLRAHFK-NAGLPQAFQ 176 Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + +L + RL ++ I + Sbjct: 177 ILDTQDQLSAIKRLCKQYKIDDERFPPKQMAW---------------------FIGNCKE 215 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 E + +D+ A + ++I + + ++ + ++ Sbjct: 216 EGLRPKDVVASDPD--------TRKKIEI-YQLYEDQCQREGVVDFGELMLRSFELLRDN 266 Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI------VLPGLDCHIPTAI 270 + I+I + + +A G VL D Sbjct: 267 APIREHYQRRFRHILIDEFQDTNKLQYAWIKMIAGVGQGGSDAGAGSVLAVGDDDQSIYA 326 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + ++ S Sbjct: 327 FRGARVGNMTDFVREFAVRQQI--------------------------KLEQNYRSYSNI 360 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388 + N+ L + Q V + EA ++ EA + ++ + + + + Sbjct: 361 LDSANALISHNSRRLGKNLRTDQGAGEPVRVYEAPSDFAEAQWMVDEMKQLIRDDVPRSE 420 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 A++ +R ++ L GI + G+ + L + ND + Sbjct: 421 IAVLYRSNAQSRVIETGLFNAGIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFLR 480 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +V P G + +L ++ + Sbjct: 481 VVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDVMREQTADL 540 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + + L++H + S + + Sbjct: 541 NLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFV-MQEGFGREAPGMAPLV 599 Query: 569 HRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + LS + + +T Sbjct: 600 SSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNMAAAGQDA 659 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + ++ S+ L FD + + G+ E F SD + E+ + A Sbjct: 660 IQLMTVHSSKGLEFDCVFITGMEE---------GLFPHENSMSDHDGLEEERRLAYVA-- 708 Query: 688 FEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVL 722 + + L + S + SR+ L Sbjct: 709 --ITRARKRLYLSHSQTRMLHGQTRYNLKSRFFDELPEE 745 >gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1210 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 93/834 (11%), Positives = 223/834 (26%), Gaps = 96/834 (11%) Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMS 247 K + + + A ++ E+ + +++ + RL++ Sbjct: 369 KAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDEYQDNNHMQERLLT 428 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIK 306 ++ NG D + + N + T+P Q L L + + Sbjct: 429 LLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQGKLILLKENFRSQ 483 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI------QKCFSDVA 360 E ++ V + S+ + + + Sbjct: 484 TEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLD 543 Query: 361 LIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS 416 + +AD+ E +A + +E + L+ + R + ++GI + Sbjct: 544 IEDADDISPSEVTIVAKEIIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVAD 603 Query: 417 AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK---NALE 472 G ++ ++ L I + A+ L++ P+ F E + + Sbjct: 604 GGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEA 663 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + + ++ + K + + +S L+ I Sbjct: 664 DCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRF 723 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNLWFEEEGKT----- 583 + + ++ Q+ + L + + Sbjct: 724 YFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVAS 783 Query: 584 ---------------LSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPK 621 L + ++ + I++R + + Sbjct: 784 SKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLE 843 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-----------------PKNTAKNPFL 664 + ++ + LN L L L+E + + K+ Sbjct: 844 EKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEF 903 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLL 720 + +S +L A + + D+ +A L + E + + + + Sbjct: 904 TDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQ 963 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 L D + ++ L+ ++ P P + L + Sbjct: 964 QLLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDS 1022 Query: 781 DPYAVYAR--RILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 D V + R L +P F K + + G+ H ++ + + + I ++ Sbjct: 1023 DGVEVMEKSYRTLNAFTLPEFSKQVKVEASQVGSALHRLMQAIPLTKP-ISLATIAQALE 1081 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AIE 892 +I K L + + F Q+ ++ P + + Sbjct: 1082 EIEAEAVVKAALDLQKVEQFFTE-TALGKRF-------QTYSTNLYREAPFAILKKDPLS 1133 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + G D LL +++ DYKT + QL L A AL Sbjct: 1134 QEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQ 1186 >gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] Length = 1119 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 73/808 (9%), Positives = 195/808 (24%), Gaps = 109/808 (13%) Query: 186 DFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTG 237 F + + R + + A + + G I++ + Sbjct: 337 RFAAVFLPEYERRKQLRGWLDFDDLILRARLLLNDPAVAAWVLYRLDGGIDHILVDEAQD 396 Query: 238 SIPATARLMSTVA---------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 + P ++ +A + D + ++ + + Sbjct: 397 TSPDQWDVVEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGADPQAFDRMQAEFGR 456 Query: 289 STH----------PQYSLAKLLDFLDIKREDVKRLGNV-----SNEMYGRSMVISKSFLP 333 +YS L + + + S + ++ + + L Sbjct: 457 KLQESGSKLWDWTLEYSFRSSSAILSLVDILFENRADAGFQKESQHLAFKADLPGRVDLW 516 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--------- 384 P + +TD + P + +I A+ ++ A ++ Sbjct: 517 PVVEKVEDTDEGDWTDPVDRPAAQHHTVILANQIAARIKAMIDAGETIPEDGPTRGTFVR 576 Query: 385 ----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L+ +L + G+ I + + + L L +LL+ + Sbjct: 577 RKVRPGDFLILVQRRSDLFAEIIRACKAQGLPIAGADRLKVGAELAVKDLAALLSFLATP 636 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 D +++AT++K PL + + + E + VL+ + Q Sbjct: 637 EDDLSLATVLKSPLFGWSEQMLFDLAHRRQ-ERYLWAALRQRAGDFPETLAVLNDLRGQV 695 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + R+ LL + + + + Sbjct: 696 DFLRPYDLIERVLTRHDGRRKLLGRLGAEAEDGINALLSQALAYER-------------- 741 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 +W + + + + + + + + + ++ ++ + Sbjct: 742 ----SDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEAPIVILPDTGKR- 796 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKY 680 + + + + + + D ++ + Sbjct: 797 QPPRDAEIMVADGTPLWKVPAD--------------------LSPELVARAREDARQREE 836 Query: 681 IGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 + + + + + S W Q + G + G L Sbjct: 837 NERLRLLYVALTRAEKWLIVAAAGDLGKDG--SSWYQLVEEAMGRAGATEIPGTGIRRLA 894 Query: 741 WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 P + R P + + L Sbjct: 895 HGDWEGLPLDHRPTPDPVQDSLPDLFHRPAPEPIPDAETLSPSDLGGAKAL---PGETGL 951 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 ++ RGT H ++ L + ++ L+ P + R Sbjct: 952 EEEAAKLRGTRLHLLLEHLAQAPRDRWDQLCARLL--------------PDMQDGDRRDL 997 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + L + +P ++ + G DR+ + V + D+K+ Sbjct: 998 LAEAAGVLTAPDLAPVFAPDALAEVPVSATVDGR--RIHGVIDRLIVTDD-VVQVIDFKS 1054 Query: 921 GDNPKKETA--QKLIDPQLSLEAAALKA 946 + + Q+ AAL Sbjct: 1055 NATVPDRAETCPEGLLRQMGAYVAALSQ 1082 >gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] Length = 900 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + + + + A+ Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 I R + + L IIK + P S A I AK E + Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + + + L NA ++ H Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + PA +L+ +A P G L G P A + + Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 Y+ +I+ + G + + + Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398 N+ + + + AD ER+EA I +R + + A+ + Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ LTR + + G + L A D + ++ P G Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R L + + + A E Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542 Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + + + N+ + I + +L + + +L + Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + K A + G+ P E + ++ + Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L F+T+ + G+ +G++P + + L E + + R Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708 Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721 L TR+ + + ASR+L + Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738 >gi|227542073|ref|ZP_03972122.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51866] gi|227182124|gb|EEI63096.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC 51866] Length = 280 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 90/266 (33%), Gaps = 28/266 (10%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + Q P + I K+ + D +GTL H ++ L+ + T Sbjct: 20 ALSPSRVSQYKKCPLSFRFGAIDKIP-----TETKDYQLKGTLVHAVLEHLMGLPPEERT 74 Query: 829 -PEINHLMKQIIDSHFEK-----ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 P L+ + + E +P H ++ + + + E ++ Sbjct: 75 YPTAVKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGLETDR-- 132 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 + + + L GF DR+D+ G V I DYKTG P A + Q+ A Sbjct: 133 MEEFVSTTLRD-DVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDAMA-QMKFYAL 190 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 + + I + L Y+ + + + + +E + + ++ EI Sbjct: 191 -VWWCLYGVIPAQ--LRLMYLAVGDDLTLSP-----DEATLEEFAGELVQTWDEIKHKGA 242 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 GE F K +Y + Sbjct: 243 RGE--FEPRTS---KLCGWCDYQSIC 263 >gi|187932856|ref|YP_001884279.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str. Eklund 17B] gi|251764547|sp|B2THC7|ADDB_CLOBB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|187721009|gb|ACD22230.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str. Eklund 17B] Length = 1152 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 ++S S +++ P++ + + LK + D G+ H+I+ K + Sbjct: 773 SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830 Query: 829 PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875 + M ++ID+ ++++ + + F ++ + E+ + Sbjct: 831 AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890 Query: 876 SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922 E + + S ++L G DRID L G + I DYKTG+ Sbjct: 891 GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + A LK + + Y R+ D I K Sbjct: 951 KHFDLNEFYYGLQMQLLVYLDALLKNSEYILKKQALPGAVLYFRVD-----DPIIKTKGD 1005 Query: 981 YSADELSEKSLKNLI 995 + +EL ++ L NL Sbjct: 1006 ITTEELEKEVLSNLK 1020 >gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1143 Score = 97.7 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 93/909 (10%), Positives = 221/909 (24%), Gaps = 117/909 (12%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLV+ + + A++ + + RA EL I + L I + + Sbjct: 228 RTLVKRVLSLLADGIDPAAILVLTFSNRAAGELSERLIAAAPDAAPKL-WIGTFHAFGLD 286 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 L P + R +A L I ++L+ P + AI Sbjct: 287 -LVRRYHDKLGLTPNPALFDRSDAIAVLEEILPTLPLVHYRNLW--DPAMVLRDIVAAIS 343 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 AK D + + + A ++ + + + L + Sbjct: 344 RAK---DELADPARYRALAQGMAAEAVDEEARIAAAKCLEIADIYDLYEQALRKHGGVDF 400 Query: 208 VG-----YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 ++ ++ +++ A+ARL+ VA +G + Sbjct: 401 GDLIMRPARLLETDEATRIAVQLRHRHVLVDEYQDVNRASARLLKLVAG--DGERLWVVG 458 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + ++ + +D L + ++ + Sbjct: 459 DARQSIYRFRGASSENMVRFGRDYPG---------AAVDQLGVNYRSTDQIVRSFVAVAP 509 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMS- 381 R +D S + + +EA +A ++R Sbjct: 510 RMGASHGMLALALEADR-------------GAAPSRPEICRFETLDDEAAGLAASIRELE 556 Query: 382 -LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 + A++ + L GI I L L LL+ Sbjct: 557 GAGVRLRDQAVLCRTNGRLNEIAAALEARGIPILHLG--SLFEREEVRDLLCLLSLAVDP 614 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 + +SR ++ AL G + L + + Sbjct: 615 FGDAIVRVGAMPRYGLSLQDAYCVSRHLRSIGKPALAGLAEASAAPGLSTAGRAGVERLA 674 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + + + D L + +S + + Sbjct: 675 ADLAGLRANASAWDFLATYLLDRTD--------LAKQLSQADSLTAQMRAVAIWQFLNFV 726 Query: 561 LQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKP 620 + V + + + + + ++ D V Sbjct: 727 REQVPVGGGLPIQR------------------------TLDRVRQLVLLAEERDLRQVPA 762 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLN 673 + ++ S+ L F+ + + GL + + S + Sbjct: 763 AALHLDAVRLMTVHGSKGLEFEAVHIPGLTVASFPSSNRGQRCPPPRGMVEGAGDLSPAD 822 Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNL 731 + F + R + R N AS +L + + + Sbjct: 823 EAKRAHDDEEECLFFVALSRARTHLRLYHARKQRNGSGRSASPFLGWIPATLLDEISNPP 882 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 +P + + S + P + +L Sbjct: 883 ---------------TLPLPAGASTSQPIAIAWPADWSVTDSRLGSYEKCPRRFFYTHVL 927 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN--KNTPEINHLMKQIIDSHFEKENLP 849 L + P R H+ + +L++ + + + + + Sbjct: 928 GLGG----ARKPTAFSR---THDCLYDLLRWLADTRRTAEPTVADAESAFEKIWGTRGPT 980 Query: 850 PHIDIIWRHLFH-KISHSFLEHEEKIQ-SSIEKIFVNIP-AKMAIESIGIHLTGFADRID 906 H ++ + + + + + ++ P ++ +E + Sbjct: 981 DHAFAADYRRLASRLIGALVRSGAGRRFREAQPLAIDFPNGRVVVEPNELA--------- 1031 Query: 907 LLKSGFVDI 915 L G V I Sbjct: 1032 ELPDGTVVI 1040 >gi|298711633|emb|CBJ32689.1| RecB family exonuclease [Ectocarpus siliculosus] Length = 337 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 89/314 (28%), Gaps = 62/314 (19%) Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 R P+E R+ S S + P Y R IL L P + T + Sbjct: 16 DVAALGSRKDGSRPVEGMVRSISPSAVAAFQQCPQLFYYRYILGLKSPPTRE-----TLK 70 Query: 809 GTLFHNIITELIK-KRINKNTPEINHLMKQIIDSHFEKENLPPHI-----------DIIW 856 G H +++ + +++ ++ L ++++ ++ P + W Sbjct: 71 GIAVHEVLSLFFTLEEGSRDIGHLHELFRKVMTGLIAQDKEDPSRGYGKLFETQEEEKKW 130 Query: 857 RHLFHKISHSFLEHEEKIQSSIE--KIFVNIPAKMAIESIG------------------- 895 + +F+ E + E V + Sbjct: 131 VVECLDLVANFVRVESDARDDGEGDPEHVELRMTHEFGGGETAAGRHIVEEEGEGGQAGD 190 Query: 896 ----------IHLTGFADRIDLLKSGFVDITDYKTGDNPKKE-------TAQKLIDPQLS 938 +++TG DR+D G + + DYKTG P + QL Sbjct: 191 GVAASNTAWSMNVTGIVDRLDRCPDGTLRVVDYKTGKIPNLKYSEATNQRIMDEKFFQLQ 250 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 + A ++ + + + LK + S + + + V Sbjct: 251 IYALLVER-----VLGEAPGEMRLVYLKGPASVTRKIEPAALPSVEGELRSTWDEIAGSV 305 Query: 999 TLLQNGEQPFISHL 1012 + P S L Sbjct: 306 RR--DSFPPRTSRL 317 >gi|256848516|ref|ZP_05553958.1| ATP-dependent nuclease subunit B [Lactobacillus coleohominis 101-4-CHN] gi|256714783|gb|EEU29762.1| ATP-dependent nuclease subunit B [Lactobacillus coleohominis 101-4-CHN] Length = 1253 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 81/824 (9%), Positives = 204/824 (24%), Gaps = 85/824 (10%) Query: 77 IIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL 136 + S + D P +S++ + +A++I PE L Sbjct: 72 QVLSFTRLAWFLLRNDPHYQT---PRISDVGLTMLVAKIIREL------------PEDDL 116 Query: 137 SLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLL-AADFLKI-- 190 + A+ ++L + ++ +D A+ ++ FL Sbjct: 117 KMFAKEAHRYGFVQDLTAQLIELQNANVDPQDHDAIIERVQKWADEHQERVSSAFLDKMT 176 Query: 191 ----ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTG-SIPATARL 245 + E L + L++ + + G ++ Sbjct: 177 VLFKVYAAFEEGLT--GRLNSCAVYQLLIKRL--FKDDFSHTHFFLNRYNGQFSAMEEQI 232 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 + T+ + LD + T + N + H A+ + + Sbjct: 233 VETMIKKAASTTIGLVLDR-----PYRGATLPNPNNLFYQSGMQYHRLAEFAEQQPDVML 287 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + V + VS+ + + + + V A Sbjct: 288 VDDQVVTVNRVSDGL-------------VEVEEWMKAQAQFTIPEQQPRTDQGVHFFTAP 334 Query: 366 NEREEAISIAIALRMSLD---ENKKKSALITADRNLARRVK-LELTRFGINIDISAGIPL 421 E +A +R + + ++T + + + I + Sbjct: 335 TRVAELQRVAAKIRQLVASGQYRYRDFLILTRHLDGYTTMLKPVFDANEVPIFNDNDRSM 394 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK-NALELVALRGNK 480 + ++L ++ + L+K L ++ + + A+ + Sbjct: 395 ANHPLVTLLEAIFKIADHYFQLPDVLQLLKTGLVVPQERDEKGRSYYSSQRFMSAVYTTE 454 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQ----CITPLVT 536 N A + HV +E+ K+ I L Sbjct: 455 NWCLKYGKTGHAWLEQAEWEFTPHVDPQILANNEQLKKREQQQTSQINWVKSVVRNQLAP 514 Query: 537 YKTNKNSTCGNLSISDWT---------KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + + + + + + ++ T+ +L Sbjct: 515 FIKQLQGASDGQTAAQILYQGLINLGVREQLEQWAKAATKRGQMDLAQQPQQVWNTMVNL 574 Query: 588 FSKIIETGS-CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 + + + ++I T + + T + + + Sbjct: 575 LDEYVTVLGNEGTFYLTAFAEVIQVGFQTATYSQIPSTMDQVLVSETGIVQTNQRKVVFM 634 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE----------KYIGQAAHDFEMANGTRH 696 G + V P+ LS + L+ + + +A ++ R Sbjct: 635 IGATDDVMPEIKISEGLLSDPDKQLLSQGLTDGQFLPVSGMQRIDNEAMLNYLGMLNARE 694 Query: 697 -LIYTRSLRENNIPTI-ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 L + + +N + S +L L G DN + R + D+ +P Sbjct: 695 QLYLSAPVMGSNEERVTMSPYLVGLATYFGQWDADNNQLRNDLPFAPEPRADFAKLEPFV 754 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P Q + + + + R I + + Sbjct: 755 SAPAATLTNYVQVERQAKNAGQT-----VSAGWRNISREMNHERLGWLKSSLNYQNQTTK 809 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 + E+ + P++ D+ F+ + Sbjct: 810 LSPEMAAQLYGHLDPDVLKQATAAGDN-FDWTTVSDDQRHNTLA 852 Score = 73.8 bits (179), Expect = 2e-10, Method: Composition-based stats. Identities = 32/304 (10%), Positives = 83/304 (27%), Gaps = 70/304 (23%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPE 830 S S+++ +PY + + L L + + GT +H+ + ++ + +N + Sbjct: 854 SISQLQTFYRNPYEYFLKFGLDLQKREELE--ITNANSGTFYHDSLEAFVR-LLKQNQVK 910 Query: 831 INHLMKQIIDSHFEKENLPPHID-------------------IIWRHLF--HKISHSFLE 869 + L + + K + + + ++ + + Sbjct: 911 LAELADDQLAFYVAKAMDWAFSRQPSVVELAANYERIAYQKHHLEQTVLTMARVLRNQAQ 970 Query: 870 HEEKIQSSIEKIFVNIPAKMA--IESI----------------------------GIHLT 899 + + ++ ++L Sbjct: 971 YSASH-----PVTTEQKFGHVGLLDDRHDSQPSYRALIYETKIRNQKSSQPDLKRKVYLR 1025 Query: 900 GFADRID-LLKSGF--VDITDYKT-GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR 955 G DR+D + + + DYK+ A + +D Q+ L+A R Sbjct: 1026 GRIDRVDAVRGDQQDYLTVVDYKSANKEFDLVDAYEGLDLQMLTYLNNLQANLDIANPDR 1085 Query: 956 K--VANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNL---IEIVTLLQNGEQPFIS 1010 + +A Y+ L K + + + L ++ + G + Sbjct: 1086 QSAIAGALYLHLFDPHYQYKNIIKKNPEITELQNHEFKGILLNDDAVLRQIDEGLA--AA 1143 Query: 1011 HLRL 1014 Sbjct: 1144 KPNP 1147 >gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 771 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 80/694 (11%), Positives = 191/694 (27%), Gaps = 120/694 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + + + L I + + D N Sbjct: 54 NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ + + I AKN D++D + E Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V N R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A +EREEA+ IA + + E K A++ Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFIASTIDNIVREEGKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEP- 413 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + ++ + + + + + Sbjct: 414 ----------------------KRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGK 451 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L+ + + + + T + Sbjct: 452 A--------AQAVWDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE T++ F E ++ + + L +++ + ++ Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 L++ TR+L SR+++ + Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643 >gi|218458526|ref|ZP_03498617.1| hypothetical protein RetlK5_03323 [Rhizobium etli Kim 5] Length = 97 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 58/92 (63%) Query: 5 KPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEF 64 +P + TI PF + + L +G L FR++ +PL LA VTIY+PT+RA++ LRS F Sbjct: 6 QPRILTIPAGLPFLKTLATTLCDGRLTPLFRHNVDDPLSLAGVTIYLPTRRAVRVLRSAF 65 Query: 65 IEITGKKSTILPIIKSLGDVVEEKFTADLLLS 96 +++ G +S ILP+I+ LG+ ++ D +L Sbjct: 66 VDLLGGRSAILPVIRPLGETDDDSGYFDEVLP 97 >gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 970 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 95/888 (10%), Positives = 220/888 (24%), Gaps = 166/888 (18%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE----HLMKGTKGPIIIAGSTGS 238 + L + + L + + ++I Sbjct: 177 ASDAQLGKTLRSIQDGLARDQFIDFASMVREVADRSQSAGRVRERLASIRHLLIDEYQDV 236 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK 298 A L++ V + + D W + + Sbjct: 237 SGAQEELVAAVHSLGGS--IFVVGDDDQSIYGWRGAHVANILEFEDRYPNVSRH------ 288 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSD 358 LDI + + SN + + P+ + Sbjct: 289 ---VLDINFRSTRAIVETSNAFAAAQLGPQRLPKQPEAYA--------------DQGPRQ 331 Query: 359 VALIEADNEREEAISIAIALRMSLDENKK-------------KSALITADR--------N 397 + + EEA +A + + K A++ Sbjct: 332 LLVHHFPTRAEEAEWVADRIATLIGAEYKKRPDDPGRGLTPADFAILMRSTKSPEQDGSP 391 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 L GI+ +SAG + L + +A+ + +A + + Sbjct: 392 RHAAFSDALAMRGIDFTLSAGGSVFDRPAVQALREVFSALEQGTIDRNLADALVTEHIRP 451 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 +P + + +A H P +R + Sbjct: 452 AYPHVNVRETY-------------------------NVLAEWGRRIHQPAGSARQRLFPQ 486 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 +L L++ + + + D ++ Sbjct: 487 DLLFDLLEAFGLA----------------KSDFDEDVMRDIGLFSRMLQDVESVYLSVDS 530 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + ++ + G + + K + + + + I + + Sbjct: 531 TNRFRAVVRFLQQVADKGYDV------------------STKDSVSRPNAVTISTVHQVK 572 Query: 638 LLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQS-DLNLKTAEKYIGQAAHDFEMANGTR 695 L F + + + G +P + + L + + + + A F A Sbjct: 573 GLEFPVVFVVDVVPGRFPGKQSSFDSLLPANLMASAIAHGAYTNNVFAEARLFYTAMTRA 632 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + S R L+ + + Sbjct: 633 ERFLHVTGAALLPNGKRSNRQSTFAAALKDIELCTDPTRLPEDLNRAPQERDAEEATL-- 690 Query: 756 RPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 SFS++K +N P R+ GT+ H Sbjct: 691 -------------PTSFSDVKYYLNCPKNYQFRKSYGFSPRVPELFG-----YGTVVHVA 732 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENL------PPHIDIIWRHLFHKISHSFLE 869 I +L + ++ + H + P + KI+ +++ Sbjct: 733 IEKLHEMFRDRAPTPDEAQAVAEQNFHLKHVAPSRDPETRPGAYEQAKEKARKIAGEYVQ 792 Query: 870 HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI----DLLKSGFVDITDYKT---GD 922 +++ V + + I + G +TG D + D+ + + D+KT G Sbjct: 793 QYGTD--FVQQRQVEVRFE--IPARGCLITGAIDLLMKCDDVGEIVEAHVLDFKTMEGGK 848 Query: 923 NP--KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 +P + + + Q+ L A A + I L + + I D + Sbjct: 849 DPLANAKLDWRELSLQVQLYAKAAREVYSENAATGS------IHLLKDNRRIEIPIDPES 902 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 +A ++KN+ V + + + P +R S + ++ L Sbjct: 903 VNA------AIKNVEWAVQGILDQDFP----MRPSTQKCEACDFHRLC 940 >gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] Length = 1115 Score = 97.7 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 79/749 (10%), Positives = 186/749 (24%), Gaps = 55/749 (7%) Query: 229 PIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY 288 I++ + +L+ + + V + Sbjct: 394 HILVDEFQDTSNQQFKLLKKLMRGWHEHNVTGAPPRTAFIVGDGMQSIYGFRYADVGLFL 453 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 + L+ L++ + + G V + V ++ F + ++ Sbjct: 454 QAKARGIGGLPLESLELTQNFRSQAGVVD----WVNRVFAQVFPKVNDAERSEVSHTSAV 509 Query: 349 IPNIQKCFSDVALIEADNER--EEAISIAIALRMSLDENKK-KSALITADRNLARRVKLE 405 N + V ++ EA IA + A++ R+ A + Sbjct: 510 PVNAALPGNAVEAHLFPDDAGLAEANWIAGKIGHIYQSEPDATIAVLIRARSHAAPIIAA 569 Query: 406 LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS 465 L + + + + L SL + D +A L++ P E Y Sbjct: 570 LQQHDLPFLGRDLEKIQHSASVMDLLSLCRWLSNPADEVAALALLRAPFCGLLLSEIYAL 629 Query: 466 RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 + L+ A +E ++ L + Sbjct: 630 ---------IEDQPRPLSLRKILRRASDLLDADAAIRAGSLEAALDWAESRRDRLSLRIW 680 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 + + +S D + V LD L Sbjct: 681 VEQIWLQLQAASTLSMQGRADAMSFFDLLAR--ADAEGVGLDPDWLERALEQRYASHEHG 738 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 ++ + + + + + + + L + + Sbjct: 739 QFGVEL------MTLHKAKGLQFDYVFMPALHKGTRGNQRELLRW----HFQAREGERSF 788 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR-HLIYTRSLR 704 L ++ + T N L+ ++ + R + + + R Sbjct: 789 LIAADDRLKKAPTLYNYLSW--------LQKGKEAAELRRLLYVGVTRARCRVWLSGAGR 840 Query: 705 EN--NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 + + + L + N + + R+ + QP + Sbjct: 841 VDNTDGSQLTWPGSASPLGILREALSGNAVEHASSITETPREEKDSETQPSLPTCQLLRL 900 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 A + + + L L + G + H + L ++ Sbjct: 901 PLANLVAHKPDDGALASIERQQGIQAEQLALIQHAGHFNE---RTVGVVVHRALELLSQR 957 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 + E++ +++ + L + + + L E ++ Sbjct: 958 --DVLPNEVDTAIRRGLQFGLADAGLYGDSLTESLVVAETMIAATLNDERGRWILSQRSD 1015 Query: 883 VNIPAK-MAIESIGIHLTGFADRIDLLKS-GFVDITDYKTGDNPKKETAQ-------KLI 933 + M+ G + DR L G + DYKT ET Q + Sbjct: 1016 AHSELVLMSSGVNGAPVQNIIDRTFLDSETGKRWVIDYKTSRPNPLETEQQFLAREVQHY 1075 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFY 962 PQL+ A ++ +F L++ Sbjct: 1076 APQLTRYRALIE--AFDPAASAVKTALYF 1102 >gi|257466894|ref|ZP_05631205.1| hypothetical protein FgonA2_05600 [Fusobacterium gonidiaformans ATCC 25563] gi|315918041|ref|ZP_07914281.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691916|gb|EFS28751.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563] Length = 876 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 71/433 (16%), Positives = 136/433 (31%), Gaps = 60/433 (13%) Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L +L I L++ PK T FL+ V + L+ +T E+ I + Sbjct: 473 LRDWHSLMYERKKEKQAIFLDLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYR 532 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQC 737 F A ++ + + S +++ L G F +L++ Sbjct: 533 FYQAVYSQKRVVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSS 592 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796 + WT++ + K + L+ + + + L Y +IL Sbjct: 593 EVSWTKEFEEGKALALKKENE--ELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGRA 650 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKK-----RINKNTPEINHLMKQIIDSHFEKENL--P 849 G + H + + ++ + + + Q ++ F+K++L P Sbjct: 651 EELSFGLSPRLLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIP 710 Query: 850 PHIDIIWR----HLFHKISHSFLEHEEK--IQSSIEKI----FVNIPAKMAIESIGIHLT 899 P + R K + +FL++ EK +I + + + + + Sbjct: 711 PFLKQYLRKIVYPRIIKNTRNFLQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQ 770 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G AD + + G +I DYKTG I+ QL A F + Sbjct: 771 GRADLVIEAEQGK-EIIDYKTGKT---------IEDQLDFYA-------FLFYGEEQKVE 813 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 Y L + KK+ E+ KN E + ++ F Sbjct: 814 GRYYNL---WDGMFSQGKKKEELNSACLEEFFKNFEEDSFYHISEKKAF----------C 860 Query: 1020 IQSEYDHLARVAE 1032 Y + R E Sbjct: 861 TYCPYQKICRREE 873 >gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] Length = 778 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 81/687 (11%), Positives = 184/687 (26%), Gaps = 116/687 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + + T +A +E+R + G S L + + V + Sbjct: 75 ELLVVTFTNKAAREMRERIGHLIGPSSEGLRWLGTFHSVAAQI----------------- 117 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D + L + + I K+LA +ID + Sbjct: 118 LRRHAELVGLKSSFTILDTDDQERLLKQLLEAANIDTKRFTP--KSLAHMIDHWKNRGWT 175 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + L E + A + RL LNA + + ++H Sbjct: 176 PDKLPP--GEDFANGKGPAL------YAAYQARLATLNACDFGDLLLHNITILSKHADLA 227 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + A + + + + D W + Sbjct: 228 EEYRRRFRYILVDEYQDTNVAQYLWLRLLTSSTGNVCCV--GDDDQSIYGWRGAEVDNIL 285 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + + L+ K + ++ + + Sbjct: 286 RFERDFPGAK---------VIRLERNYRSTKHILGAASALIAANQ--------------- 321 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398 D L + V + + EA IA + + + N K A++ Sbjct: 322 --DRLGKTLWTEDDSGDKVRVRGVWDGEAEARLIADEIETARKQGMNYKDMAVLVRASFQ 379 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 R + I + G + L I +D +A +V P G Sbjct: 380 MRAFEERFLMLAIPYVVIGGPRFFERAEIRDAHAYLRLIQSEDDDLAFERIVNVPKRGIG 439 Query: 459 FPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + + A+R ++ +L++ +A + + Sbjct: 440 DTSVQKILHIARENGVSAMRAVRHLITTDELQARTRTPLANFVRDLDRWRDLMAMGTSHW 499 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 ++ L+D + + ++ + T Sbjct: 500 QVTETLLDESGYTAMQKADRTSGQTRLDNLKELTQSMQSFETL----------------- 542 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +++ ++ ++D E + S ++ I+ ++ Sbjct: 543 -------------------------QAYLEHVSLVMDLERRDENADGSGSVQIMTLHGAK 577 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F + L G EGV+P + + + +K E+ A A + Sbjct: 578 GLEFPLVFLPGWEEGVFPSQRSID---------EKGVKGLEEERRLAYVGVTRAKQDARI 628 Query: 698 IYTRSLRENN--IPTIASRWLQRLLVL 722 + + + SR++ L + Sbjct: 629 SFAANRMVYGRWTSQLPSRFVDELPIA 655 >gi|238897280|ref|YP_002922957.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465035|gb|ACQ66809.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 1123 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 86/723 (11%), Positives = 194/723 (26%), Gaps = 68/723 (9%) Query: 49 IYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQR 108 I V + Q L+ + + G + I L +L + P S + Sbjct: 35 ILVQSPGMAQWLQIQLAQSLGISANIQ---FPLPATFIWDMFTKVLKNI---PKESPFNK 88 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI---IETEEKK 165 +L+ + + L + I L LA +AD+ D +E Sbjct: 89 DAMTWKLMCLLPDLLQNPIFASIK-HYLQDDEDKQKIHQLAIRIADLFDQYLVYRSEWLD 147 Query: 166 -WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLV-ELNASSPVGYQIALMRAEAEHL- 222 WE+ + W A W + P ++ L + + L Sbjct: 148 GWENGKKFDDLNKNQDWQAAL---------WVSLIRYSRQLEQPEWHRARLYQRFIQALN 198 Query: 223 -----MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I G + P + + ++ H + + + I N Sbjct: 199 KNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMFNNPCRYFWGDIQNYDILA 258 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG---------------NVSNEMYG 322 NI ++++ + + LL D L N ++ Sbjct: 259 KLNIKNTSSDLRNIEEEQINPLLASWGRLGRDHLYLLSQIEGLQEIHAFVDIEPDNLLHA 318 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 + + T ++ NK + + + +++ E + L Sbjct: 319 LQHDMLEFKNQA-TRHFSESNSHHNKKRLLDINDRSIGVHSCHSQQREVEILQDQLLNLF 377 Query: 383 DEN----KKKSALITADRNLARRVKLELT-----RFGINIDISAGIPLSTTLHSSILTSL 433 E+ + ++ AD + + + IS L Sbjct: 378 SEDPALTPRDVIVMVADIDNYAPYIQAVFSNASLERYLPFAISDRKMTQVHPVLQTFIKL 437 Query: 434 LNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDLK-- 489 L+ + L++ F EK LS + +E +R ++ ++ DL Sbjct: 438 LDLPQSRFSSEQVLGLLEISALSQKFEIQEKELSLLREWVEGSGIRWGLDNENVQDLSLP 497 Query: 490 -----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT-NKNS 543 + + + L ++ + L+ + + Sbjct: 498 ITGQHTWQFGLKRMFLGYAMDSQAGDWEGVLPYDESTGLAAELIGKLARLLMMLSIWRKK 557 Query: 544 TCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAI 603 + +S+W L E F + ++ + Sbjct: 558 LKTSRLLSEWLPLCRDL--FYAFFESNAETESIFILIDQQWQNIIQYGLSAQYANTVPVS 615 Query: 604 EWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + + + + + + + R + F + L G+NEG++P+ F Sbjct: 616 LIRHDLVTRFENQRISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNEGIYPRILPPLGF 674 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV 721 + ++ + + ++L + R +N S + LL Sbjct: 675 DLMAKKRQKGDRSRRDDDRYL-FLEALLSAQQYLYISYIGRSIQDNSQRYPSVLVSELLE 733 Query: 722 LGG 724 G Sbjct: 734 YIG 736 >gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] Length = 900 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 86/690 (12%), Positives = 180/690 (26%), Gaps = 69/690 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + + + + A+ Sbjct: 104 EILAITFTNKAAGEMRERVETLVGNAAKYM-WVSTFHSSCVRILRAEAETL--------G 154 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 I R + + L IIK + P S A I AK E + Sbjct: 155 ITRSFSIYD-TADTKALLTRIIKGRGLDPKRFTPKSFAARISNAK----------NELVE 203 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + + + L NA ++ H Sbjct: 204 PATFAEMAAPD------KISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPEIL 257 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + PA +L+ +A P G L G P A + + Sbjct: 258 AKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS--- 314 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 Y+ +I+ + G + + + Sbjct: 315 ---------DQSIYAFRGATIR-NIEEFEQDFPGATTVYLEQNYRSTGTILSVANAIISE 364 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRNL 398 N+ + + + AD ER+EA I +R + + A+ + Sbjct: 365 NSGRHKKNLWTEAGDGPKAIMFAADTERDEAAFIIREIRDAHTAGTPWDEFAVFYRTNSQ 424 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ LTR + + G + L A D + ++ P G Sbjct: 425 SRALEEMLTRENVPYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLG 484 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R L + + + A E Sbjct: 485 DVAQTKIREAARLSGTSF--GQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDE 542 Query: 519 LAVLLVDHILQCITPLVTY--KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + + + N+ + I + +L + + +L + Sbjct: 543 AGAPLDEILGTALEDSGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFL 602 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + K A + G+ P E + ++ + Sbjct: 603 ERISLVADTDQLPDQGSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTA 662 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L F+T+ + G+ +G++P + + L E + + R Sbjct: 663 KGLEFNTVFVTGMEDGLFPHSRS--------------LDDPEAIEEERRLAYVAVTRARR 708 Query: 697 -LIYTRSLRE----NNIPTIASRWLQRLLV 721 L TR+ + + ASR+L + Sbjct: 709 QLYLTRAAARTVFGDTMNMPASRFLNDIPA 738 >gi|149375449|ref|ZP_01893219.1| exodeoxyribonuclease V gamma chain [Marinobacter algicola DG893] gi|149360154|gb|EDM48608.1| exodeoxyribonuclease V gamma chain [Marinobacter algicola DG893] Length = 1198 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 97/935 (10%), Positives = 226/935 (24%), Gaps = 95/935 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG--------KKSTILPI 77 L +V R PL P L S T V + Q L+ E I Sbjct: 22 LRRAVVWICRQSPLPP--LESETFLVQSNGIAQWLKLALAEDPSEEGADVGVGGLGIAAG 79 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + L +L+ P S + + RL + + D + Sbjct: 80 MDFLFPARFIWQAYRAVLTSEGVPEQSPFDKSRLVWRLFRLLPELIADDVFAPLRRFMAG 139 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKY 194 LA +AD+ D + W +++ D L+ + Sbjct: 140 TDTETRR-YQLAGKIADLFDQYQVFRADWLADWEAGHDRLRMARGEHRDLGDELRWQAVL 198 Query: 195 WTERLVELNASSPVGYQIALMR-------AEAEHLMKGTKGPIIIAGSTGSIPATARLMS 247 W + ++ + R A + I++ G + +S Sbjct: 199 WRRLVADVGELAGTSRSRIHTRFMEQGQTLTAADRPQNLPRRIVVFGVSSLPKQALEALS 258 Query: 248 TVANHPNGAIVLPGLDCHIPTA---------IWNTITEKSTNITSSNTTYSTHPQYSLAK 298 ++ + + + + + + H Q++ Sbjct: 259 ILSRVSQVVLCVHNPSEFYWADIISDRDLLTADRKRGKTHPGLAALTDPDALH-QHANPL 317 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK---- 354 L + R+ ++ L N + V + + + + Sbjct: 318 LAAWGKQGRDYIRLLDEFDNPEAYQGRVATPEGRIDIFTPHGDPEKPALLHQVQNDIRSL 377 Query: 355 ----------------CFSDVALIEADNEREEAISIAIALRMSL----DENKKKSALITA 394 + V A + + E + L + + + ++ Sbjct: 378 TSQSEMLGQARTLDPFRDNSVVFHNAHSPQREVEILHDQLLAAFNSDPELRPRDVIVMVP 437 Query: 395 DRNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 D + + + I IS L +L+ I Sbjct: 438 DVDTYAPHIQAVFGRYPSSSLRYIPFTISDQGQRHRQPVLIALDTLMALPESRFGVSEII 497 Query: 448 TLVKHPLAKFGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIAT 498 +L++ P + F E L + ++ +R +S L ++ + Sbjct: 498 SLLEVPAVRSRFGIVEGDLPLVRQWVDGANIRWGLHSDHRSSLDLPEGLERNTWQAGLRR 557 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI-TPLVTYKTNKNSTCGNLSISDWTKLT 557 E E L + + + + + + + S W Sbjct: 558 MLLGYGAGRDDPWQGIEPFEEIGGLQAGVAGNLYRFVDRLEELWHELRSSATPSGWLDRL 617 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + L+ + L + L ++ DI+ ++ Sbjct: 618 QSILERFFAELSDDDLLLVNRLRRQAEQWLQDCNSAGMEDVELPLNIVRDILLEGLEEGG 677 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + + + R + F + L G+N+G +P++ F + ++ Sbjct: 678 LNQRFLAG-KVNFATLMPMRAIPFRRVCLLGMNDGDYPRSRPPVDFDLMAVDYRPGDRSR 736 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + + + L + R ++ S + +L D D + + Sbjct: 737 REDDRYL-FLEALLSAREQLYISWVGRSIRDDSERPPSVLVSQLC-----DHLDAVWQVE 790 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD- 794 + + L + R S + L Y L Sbjct: 791 KSDQKTSPALTIKHPLQPFSREYFPAGNRGAGHNGSPDVHEVLATRRLFTYDSEWLSAHQ 850 Query: 795 -----------FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 + D G + ++R+ ++ L + F Sbjct: 851 QRETDVVGVELPFLPPAEPLSIADVGAFLKRPVDTFYQRRLQVRFTDVESLDTD--NEAF 908 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + L + + + Sbjct: 909 AMDGLHHWRLEDELIRHAVMKSGTEDELHQRLEGA 943 >gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] Length = 764 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 78/690 (11%), Positives = 199/690 (28%), Gaps = 120/690 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + +T +I + + + + Sbjct: 54 NILAITFTNKAAREMRER--AMLLNPATEETLIATFHSMCVRILRRE-ADHIGYDRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R+I + +S + I AKN D+ID + E Sbjct: 111 VDPGEQRTLMKRIIKGFN-----------MDSKKWNERAILGTISNAKN--DLIDEVAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 ++ + + K + E L A + +R + Sbjct: 158 QQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDSNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ +V N R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANDVINNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITA 394 K+ ++ +A +ER+EA+ +A + + EN++ A++ Sbjct: 305 ----------KLWTQNDEGQEIVYYQAHDERDEAVFVASTIDQEVRENRRDFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I +D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTHDNISYERIVNEPK 414 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G L+ + A+++ ++ Sbjct: 415 RGVGPGTLE------------------KIRTFALEQNLSLLEASEQIMLSPIKGKA---- 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L+ + + ++ + T + Sbjct: 453 ---------AQAVWDLANSLLNLRADLDNYSLTELVEAVLDKTGYLEALQVQNTLESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE T++ F + + +A + + L +S+ + ++ Sbjct: 504 IENIEEFLTVTKNFDENKDDAPEDEAGLDKLSRFLNDLALIADTDDGDVESAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ E V+P + A + ++ + + Sbjct: 564 AAKGLEFPVVFLIGMEENVFPLSRA--------------AEDPDELEEERRLAYVGITRA 609 Query: 695 RHLIYTRSLREN-----NIPTIASRWLQRL 719 ++Y + + +R+++ + Sbjct: 610 EEVLYLTNANSRTLFGKSNYNRPTRFIREI 639 >gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150] gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae NSW150] Length = 1084 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 99/826 (11%), Positives = 212/826 (25%), Gaps = 126/826 (15%) Query: 154 DIIDIIETEEKKWEDLHAL-------KNEKYGMWWLLAADFLKIASK---YWTERLVELN 203 ++++ + + L AL + W + + + E N Sbjct: 317 ELLNELSEY---PDFLEALIQVSNLPDPQYDPEQWQVLQALFLLLPLLVGHLHVLFSEKN 373 Query: 204 ASSPVGYQIALMRAEAEHL--------MKGTKGPIIIAGSTGSIPATARLMSTV---ANH 252 + A + + T I++ + L++ + Sbjct: 374 EVDFTTISQQALSALGDADNPTDLALYLDNTLHHILVDEFQDTSITQFELLTKLVHGWQE 433 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST--HPQYSLAKLLDFLDIKREDV 310 +G + D + S HP L Sbjct: 434 GDGKTLFIVGDPMQSIYRFRQAEVGLFFRAKEQGIGSVKLHPL--------ELSCNFRST 485 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 + + + + + F + + + K S + I+ +E Sbjct: 486 QTIVD------WVNKHFAHIFPAQIDIESGSVPFHPSVNVIKDKENSTIYAIKFKTREQE 539 Query: 371 AI-SIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 A I +K A++ R + L + I + L+ H Sbjct: 540 AQKLIEAVQHELQAYPQKNIAILVRSRTQLSAIIRLLRQHQIPYQGTDITLLTHLSHLRD 599 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + SL A+ + ++ +++ P + + N + + Sbjct: 600 VWSLTQALLTPANRLSWLAVLRSPYCGLSLSDIHAIARFNTKKSIYF------------- 646 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 + +SEE A L+ + Q L + S+ + Sbjct: 647 ------------ALLNLNQIQGISEEGIIRARFLIHVMHQA---LTQRYETQLSSWVIHT 691 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + + + E +E++G+ D+ Sbjct: 692 LKKLHIENILNESQLNDLEQYWTLLDRYEQDGR----------------------LPDMK 729 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 L++ + + SS L ++ +S+ L FDT+IL GL + +L+ Q Sbjct: 730 EFLMELNKLYSQQTNSSRLHVMTIHKSKGLEFDTVILPGLGAQANHGDKPMLRWLNLPTQ 789 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFD 729 + NL QAAH + + T L E R L + + + Sbjct: 790 NHGNLLLM--SPIQAAH---QEHCALYDYLT-QLDEIKSRYETQRLLYVAVTRAKSRLYL 843 Query: 730 NLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + L + P A+ T S +L+ P Y Sbjct: 844 MDYSEKSSKSSFRSLLKQQEFI------EVDPAYPAEEGTLS---FPKLLRLPLNFYLTP 894 Query: 790 ILKL----DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 + G + H ++ + E+ + + K Sbjct: 895 KPDVFFNNKTSTTSLTTSIPRLIGIITHRLLHWICNNHPE-TIAEVPWGLPRY---ELRK 950 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + + E + ++ ++ I +T DR Sbjct: 951 LGFDEKMQLDALQTIQNQITKLFEDPTGSWIIAKHHQELNEYELLVKQKNIPITRIIDRT 1010 Query: 906 DLLKSGFVDITDYKTGD---NPKKETAQKLID--------PQLSLE 940 + G + D+KTG + Q+L + QL + Sbjct: 1011 FEDQ-GKCWVIDFKTGKEDEASLLKHQQQLNEYGSYLSSRSQLPIY 1055 >gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 771 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 80/694 (11%), Positives = 191/694 (27%), Gaps = 120/694 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + + + L I + + D N Sbjct: 54 NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ + + I AKN D++D + E Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V N R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A +EREEA+ IA + + E K A++ Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFIASTIDNIVREEGKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEP- 413 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + ++ + + + + + Sbjct: 414 ----------------------KRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGK 451 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L+ + + + + T + Sbjct: 452 A--------AQAVWDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE T++ F E ++ + + L +++ + ++ Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 L++ TR+L SR+++ + Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643 >gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54] Length = 1190 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 90/803 (11%), Positives = 189/803 (23%), Gaps = 75/803 (9%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L +A R + + A + ++I + Sbjct: 355 LALAVAQLRLRFADTGEVDFIEISQRAAAALGSADDPGELLLKLDASIRHLLIDEFQDTS 414 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L+ T+ +G + D + + Q Sbjct: 415 QTQLDLLKTLTSGWQAGDGRTLFLVGDPMQSIYRFRKAEVGLFLEVAQRGVGE--LQPGF 472 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 L D + V + ++ + + + S + + + + Sbjct: 473 LNLTDNFRSQAGIVDWVNESFAQLLPKRSDAAAGAIKYSPSSAFHEALPDPAVRFHPAWS 532 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 + + A+ + +K A++ R+ + L + GI Sbjct: 533 RGGGVPAEEQAENIAVGLVRQALADHAGSKHPVAILVRARSHLGNLTRRLAQEGIRCRAV 592 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS----------- 465 +PL+ + L L+ A+ D +A ++++ P Sbjct: 593 DLVPLALRPVVADLVQLVRALSHPGDRLAWLSVLRAPFCGLTLESLQRLFGADHVTPVPV 652 Query: 466 -------------------RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 RA +A A R D + L A P Sbjct: 653 LLERLLRPAPARPADAPPVRAVSATVPAASRQGSLFDDTENPAQGALFDDAASPTPPGDP 712 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 +R + + + Y + L + + L Sbjct: 713 AGTTRQTGAALPPDDAGARLSAEALLHPDEYARLRQVAAVLLDSRNASGAMPFAAWIETL 772 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 P L+ + +++E + AI+ + + ++ + Sbjct: 773 WRRLGGPALYSGPSVANDAESLFQLVERLA--PHGAIDPAALDAGIARLFAAPDAADEEA 830 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG---Q 683 + I+ +S+ L F+T+IL GL+ F + Sbjct: 831 AVEIMTMHKSKGLQFETVILYGLHRAPRGDQPPLVRFEQSGGRVLFGPVKPRAETEADPV 890 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 + + R L L + + G Sbjct: 891 SRYLGAREARRASYEIDRLLYVAATRARKRLHLVGHVAIDGATGQAKTPSSASLLGRLWP 950 Query: 744 KLDYTTKQP------------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 L + +P + + I+ +A AR Sbjct: 951 CLTTPMPPATDGDSAEPRDDGPEWQGEPLRRVHRDGLAQLARQADVAISPGFAAAARGAW 1010 Query: 792 KLDFIPHFKKDPDR--TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + GTL H + + + I E + + +P Sbjct: 1011 GDSAEHPAWQLESGYDAAIGTLAHAWLARIGQDGIAAWPAEALAHRLPAMRRQLTRAGIP 1070 Query: 850 PHIDIIWRHLFHKISHSFLEHEEKI----QSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 S L + + QS + + I A + I + L+ Sbjct: 1071 ASQADTAAEAVLDTLQSTLADDRGLWLLSQSGARREWPLIDAAGKVSVIDLALS------ 1124 Query: 906 DLLKSGFVDITDYKTGDNPKKET 928 + G I DYKTG E+ Sbjct: 1125 --TEDG-WLIVDYKTGRPQPNES 1144 >gi|291301936|ref|YP_003513214.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis DSM 44728] gi|290571156|gb|ADD44121.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis DSM 44728] Length = 267 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 18/239 (7%) Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRIN 825 P T S S + P R I KL +GTL H+++ L Sbjct: 7 APVTLSPSRANDFKSCPLKYRYRVIDKLPEP-----TSSAQVKGTLVHSVLERLYDLGAA 61 Query: 826 KNTPEINHLMKQIIDSHFEKENLPPHI----DIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + T + + + + W K+ ++ E+ + ++ Sbjct: 62 ERTSGRALELVEPEWKRLRDADAEAAGVVDDESAWIAEVRKLVEAYFAVEDPRR--LQPA 119 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + G+ L G+ DR+D+ +G + + DYKTG P++ + + QL A Sbjct: 120 ERECLVEATTAD-GVRLKGYIDRLDVAPTGEIRVVDYKTGGVPREAFRAEAL-FQLKFYA 177 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTL 1000 AL + L I LK ID + + + + + + E VT Sbjct: 178 VALWH-----VRGVVPTVLRLIYLKDGQAIDYSPTEAELRATERNITALWRAIGEAVTR 231 >gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] Length = 772 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 178/689 (25%), Gaps = 98/689 (14%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 T +A E+R + G + + + + + D Sbjct: 57 ITFTNKAANEMRERLGRLVGPSARGM-WVSTFHSMCVRILRVD----------------- 98 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 EL + D K L + L + P W ++ I + E K Sbjct: 99 CELLGFSKSFTIYDDDDTKRLLKDVMAGLDLDPKR--WPVNSIRGKISQAKNELKAPGVY 156 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQI---ALMRAEAEHLMK-- 224 + + ERL NA + L + + L Sbjct: 157 ADEARDPVS-------KVTARVYAVYQERLKMANAFDFDDLLMYTYLLFKNHPDVLEAYQ 209 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 +++ + A + +A +V+ D W ++ Sbjct: 210 DRFRYLLVDEYQDTNHAQYAITKLLAAKHQNIMVV--GDDDQSIYSWRGADIRNILEFE- 266 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 +PQ KL + V R Sbjct: 267 ----QDYPQARSIKLEQNYRSSGNILNAANAVVAHNTKRKQK------------------ 304 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRV 402 ++ + + A +ER+E IA + +E + ++ A+ +R + Sbjct: 305 ---RLFTESGDGEKILVYMASDERDEGRWIAGEIDKLHNEGVSYEEMAVFYRTNAQSRSL 361 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 + L R G+ I G + + L D MA ++ P G Sbjct: 362 EDMLLRAGVPYRIVGGTKFFDRAEIRDVIAYLTLCINPADDMAAKRVINQPRRGIGKTTI 421 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + +A + + + A Sbjct: 422 EHIENVARNSNLTFM------------QAAEWCLADETLQMRTRNAIGGFVGLIND-AQS 468 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + + I ++ + + D + + ++ + + +E Sbjct: 469 YGGELRKVIEAVIDRSQLIQALEQERT--DEAESRIENIKEFLSVVDEYVESHEIDES-A 525 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + +T + ++++ + + + + ++ S+ L FD Sbjct: 526 LPPEGINLLADTRQLSPDSLEDFLEWVR---LRTDLDAATDDDQFVTLMTVHSSKGLEFD 582 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + + G+ E ++P + + D E+ + A + + L T + Sbjct: 583 CVFVAGMEETLFPHSNSS---------RDPQGLEEERRLAYVA----ITRARKRLYLTCA 629 Query: 703 -LRENNIPTIA---SRWLQRLLVLGGTDF 727 R+ T A SR++ + Sbjct: 630 YARQIFGETHANPVSRFVGEIPSELRKSA 658 >gi|257056217|ref|YP_003134049.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017] gi|256586089|gb|ACU97222.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017] Length = 333 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 30/293 (10%) Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 L R+ + + L + + A+ S S Sbjct: 9 LPRVEPVVPPTAWLFLSRDAATLPGMAN----GSTTTDTANAATPTQQTARRPALSPSRA 64 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 P R + +L P RGTL H+++ L TPE + Sbjct: 65 SDFKQCPLLYRFRAVDRLPEPPT-----KAQVRGTLVHSVLERLFGLPRADRTPERAREL 119 Query: 836 KQ-----------IIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 + F +EN ++ W K+ S+ + E+ + Sbjct: 120 LRPTWSQLSEECPEWMELFSEENFDKELNQ-WLTSAEKLLDSYFKLEDPRRLD--PEACE 176 Query: 885 IPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAAL 944 + + + S G+ L G+ DR+D+ +G + + DYKTG P +E + Q+ A L Sbjct: 177 LHVETEL-SSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAP-REIGEAKAMFQMKFYAVVL 234 Query: 945 KAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 + L + L + ++ + + E + ++ Sbjct: 235 WR-----LRGIVPRQLKLMYLSDGQALAYTPDEPELARFERTLEAIWQAILRA 282 >gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] Length = 1152 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 101/1018 (9%), Positives = 249/1018 (24%), Gaps = 146/1018 (14%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKST----------ILPIIKSLGDVVEEKFTADLL 94 V T++A EL + + P I + L Sbjct: 75 GEVLGLTFTRKAAAELAQRISVRLDALAGSGLIERDEEGLDPTIATYNSFAGTIVRDHGL 134 Query: 95 LSYNLNPP--VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL 152 ++ + ++ ++ R LP E L+L + + Sbjct: 135 RIGVDPDATLITEARAWQVVSAIVERRRQPLPLESPARVTELVLALDGALCENLLEVDQA 194 Query: 153 ADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ 211 + + +++ + + LK K + L + + + + Sbjct: 195 REQLGELDSFFESLATVRGLKTAVKGFDTAMKTRLALLDLVQEYRDVKRSQGMLTFGDQI 254 Query: 212 IALMR-------AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 R E ++ +++ + A RL++ + V D Sbjct: 255 ALAYRVVSAPGSQEVVAALREQYRGVLLDEFQDTSTAQVRLLARLFADSG---VTAVGDP 311 Query: 265 HIPTAIWNTITEKSTNITSSNT-TYSTHPQYSLAKLLDFLDIKR--EDVKRLGNVSNEMY 321 + W + + + + A L + + + V Sbjct: 312 NQAIYGWRGASAAALDEFHRAFNPAGCQAVHRGADPLTTIPVLPLSTAWRNDSRVLEAAN 371 Query: 322 GRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA--DNEREEAISIAIALR 379 S + P + + + Q ++ A++ A + +EA +A L Sbjct: 372 ALSAPLRHHTPAPGDAPAPRVPVEQLHARPRQAGLAEGAVLGAYLADPLQEAEVVASFLA 431 Query: 380 MSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + + A+++ R+ V L + +I + T + + +LL Sbjct: 432 DRWNPQAQ-LAVLSRTRDSLLPVAEALRARSLPYEIVGIGGMLTIPEVADVRALLTVAAN 490 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 + L+ + A+ + + S+ A Sbjct: 491 PERGDWLVRLLTAGGIGAADLAALYAHARRQMRGTSPFQPPADKSSQGASSVAQIPDAEP 550 Query: 500 KNN------THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDW 553 + V R + + V + + + + + L ++D Sbjct: 551 DSPMLAEAIEAVARSADRHPDGLAGVRVPGLSPAATRLADRLARQLRRVRRAMRLPLADL 610 Query: 554 TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI 613 L CL R + + S + +EW+D Sbjct: 611 VTLAEQCLDLDIEVAARVDDRIGRRGLDGLREVAEQFTRDLDSASLPSFLEWLDAAEAHE 670 Query: 614 DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK------------- 660 + + + ++ S+ L +D + + G+NE +P + + Sbjct: 671 RALSAPEVEPEPGAVQLMTIHASKGLEWDHVAVIGMNEKGFPLYSTQPREDLSVRSKSWM 730 Query: 661 ---NPFLSRVMQSDLNLKT----------------------------AEKYIGQAAHDFE 689 + F + L + + Sbjct: 731 GSADEFPHPLRMDAATLPPFTLGVLEPPEVDKDEVKDLLDQYCLALGRYGVSEERRLAYV 790 Query: 690 MANGTRHLIY---TRSLRENNIPTIASRWLQRLL-------------------------- 720 RH + + + + P SR+L L Sbjct: 791 ALTRARHDVLLTGSHLSKSSTTPRPMSRFLAELRRRDLVQPYGPGWVDFDPEHGNGLVTR 850 Query: 721 -----VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 D + R L + + + + E + Sbjct: 851 RARVLWPVQPGAADEAEDRDGVALARQQAAEEVAQACQDASVRLRHESEHSEGDQQAAPE 910 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 ++ +P + AR + + ++ R + + + E+ + Sbjct: 911 AEVDGEPSTLVARWCEEARVLLAEREQEASAPRQLHLPAHLAATQLDALRTDPEELALHL 970 Query: 836 KQII---------------DSHFEKENLPPHIDIIWRHLF--------HKISHSFLEH-- 870 ++ + DS ++ + + + + +L Sbjct: 971 RRPLPSRPSASARLGTVFHDSVTQRLSPHSALFSLEEAGVPDTVSAQDRQTLERWLATAQ 1030 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS------GFVDITDYKTGD 922 + + + +M I G+ L D + + I D+KTG Sbjct: 1031 DLDLLQGYLLHDTEVEREMTI--SGVTLRCRIDAVFRREGSGEDEPAAWLIVDWKTGR 1086 >gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 1069 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 118/951 (12%), Positives = 238/951 (25%), Gaps = 166/951 (17%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN- 121 E + P KSL D+ + LNPP +L L R L WR Sbjct: 186 ELATTSASYPDFAPARKSLNDL-----LLLAETALPLNPPDGGWDQLQRLLRQALRWRRF 240 Query: 122 -KLPDIIKDLYPESPLSLPISPANAIWLAKNLA----DIIDIIETEEKKWEDLHALKNEK 176 L D + S L+ WL K A D + + Sbjct: 241 FDLSDDRNLIRLLSKLNKKKKVVQKKWLTKETAKQIQAFFDHFRESDIQPT--------- 291 Query: 177 YGMWWL----LAADFLKIASKYW---TERLVELNASSPVGYQIALMRA--EAEHLMKGTK 227 WW +FL A ++ +R ++N + AL++ E + Sbjct: 292 LRQWWEYRYPHLLEFLLPAVAHFQTVRQRENQVNFQDLLMRTAALLKNNSEVRGYFQNRY 351 Query: 228 GPIIIAGSTGSIPATARLMSTVAN-----------HPNGAIVLPGLDCHIPTAIWNTITE 276 +++ + P A +M + P + D + Sbjct: 352 THLLVDEFQDTDPIQAEIMMFLTGCDLTETDWTKISPKPGALFVVGDPKQSIYRFRRADI 411 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFL-DIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 + N + L L +I ++ + + P Sbjct: 412 DTYNRVKDLIKKANGEVLHLTANFRSLTEIIDWVNPVFDDLLTQSVAPYQADAVPMQPVR 471 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD----------- 383 + NT + + + + E A IA +R LD Sbjct: 472 KNHPDNTGGIFKI------EIPGITYHKQETIVSEDAARIAAWIRTCLDGNVTLTRTAEE 525 Query: 384 --------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + ++ ++ L + I +S ++ + L LL Sbjct: 526 EQAGLSATPSPNDFLILVRYKDYMSLYARALEEYNIPFSLSGASDIAASRELQELHLLLQ 585 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 A+ ++ + + ++ + Y + N + Sbjct: 586 ALADPDNPVPLVATLRGLFFGVSDEDLYRLKKANGRFCLLSPIPD--------------- 630 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 D ++ P+ + L S + Sbjct: 631 -----------------------------DPTVESFIPIWEKLQQYRAWTRELPPSSAIE 661 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 ++ L + + + L + S+ + A +++ ++ Sbjct: 662 NIISDLGLIPYALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISELLEAGMEE 721 Query: 616 ETVKPKIEKSSTLFILGTLESRLLNFDTLILG----------------------GLNEGV 653 E + + + + I+ +++ L + L G + Sbjct: 722 E-LDVEAGIAPAVRIMNLHKAKGLEAPVVFLANPGKTVTREPNLHVSRTSGTPKGYLQIS 780 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIAS 713 +N A F + + A +A I S Sbjct: 781 KRENYASEIFAQPTNWEVHQAEETLYQQAEEARLLYVAATRAKNILIISTYPAKADKSPW 840 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 L+ + T ++ + + + + + + Sbjct: 841 HPLEEFMESIPTLDIPQVQLPAKEEPQTQITPETLQAVNQQIQENIARVITPTYTRCTVT 900 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 ++ + P + R + G + HN + L+K I Sbjct: 901 DLTKDAQAPERRHTGRGM---------------SWGNVIHNALEALVKYENIDLEALIPQ 945 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 L++Q + EKE + + I F + S + IP + Sbjct: 946 LLQQEGRAEDEKEEVLTLLQEITETPF-----------WQRVQSASEKHTEIPFGIY--E 992 Query: 894 IGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL---IDPQLSLEA 941 +LTG D G + DYKT Q+L PQL A Sbjct: 993 NDHYLTGTIDLAFREAEG-WVLVDYKTDTVRDDVHRQELVNYYTPQLKEYA 1042 >gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] Length = 1125 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 87/833 (10%), Positives = 205/833 (24%), Gaps = 101/833 (12%) Query: 154 DIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQ-- 211 D + IE L A + + + L K L + Sbjct: 310 DFMGRIEIARDARIALLAAQKTHALHRFAASFLPLYEEQKTLRGWLDFDDLIDRARALLN 369 Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGL 262 + A + G I++ + + PA ++ +A V Sbjct: 370 DEKVAAWVLFRIDGGIDHILVDEAQDTSPAQWDVIRKLAAEFTTGEGARTETQRTVFVVG 429 Query: 263 DCHIPTAIWNTITEKSTNITSSNT-----TYSTHPQ-----YSLAKLLDFLDIKREDVKR 312 D + + + S Q +S LD+ Sbjct: 430 DKKQSIYSFQGADPREFDRMQSEFESKIRAAEQLFQNKTLAFSFRSASAILDVVDRTFDG 489 Query: 313 LGNV-----SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 G+ + + + + + P + P +K ++I A+ Sbjct: 490 QGDAGFSTDEQHIAFKDTLPGRVDIWPVIEPQPAEEDRAWHDPIDRKAAHHHSVILAERI 549 Query: 368 REEAISIAIA------------LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDI 415 + ++ + + L+ L + G++I Sbjct: 550 ATQIKAMIARDTIPDDQHSDGEITRRPVQAGDFLILVQRRSVLFTEIIRACKNAGLDIAG 609 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 + + + L L +LL+ + D +++A+ ++ PL + E + + Sbjct: 610 ADRLKVGGELAVRDLAALLSFLAVPEDSLSLASALRSPLFGWSEKELFQLAHYRD-KDHL 668 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 + + D VL + + R+ K LL ++ + Sbjct: 669 WQALRTQADAYPETLKVLRDLRANVDFLRPYDLIERILTRHKGRRNLLARLGVEAEDGIN 728 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + N +W E + + Sbjct: 729 ALLSQALAYERN------------------AVPSLTGFLVWMETDDLEIKRQIDSASNQI 770 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 + + + ++ ++ + + + + G + N+ Sbjct: 771 RVMTVHGAKGLEAPIVILPDSGKRNNPVRDDIVTLNG---------KPVWKTPANDTPAA 821 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW 715 T + + L L + + + E + W Sbjct: 822 LTTKLDDIAAAQAAERLRLL------------YVALTRAEKWLIVAAAGELSKQNDT--W 867 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEI 775 QR+ + G +K D+ P P + + Sbjct: 868 YQRVDAAVDAAGAHLVDTHGLAV-KRHQKGDWDALPVTAANPGAPMQTALDPCLTTRAPA 926 Query: 776 KQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 + + + + K + + GT H + L + Sbjct: 927 RAPLRETVSPSDLGGAKALPGEAGQDEEAAKAYGTSVHLFLEHLSAADTVDWP-----AL 981 Query: 836 KQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 I+ + + L + + + L++ + + + Sbjct: 982 IDILSNKGDPGLLRAASE----------AKTVLQNPDLAHLFTADSLAEVAVTAEFGTA- 1030 Query: 896 IHLTGFADRIDLLKSGFVDITDYKTG-DNPKKETA-QKLIDPQLSLEAAALKA 946 L G DR+ ++ V D+KT P + A + I Q+ ALK Sbjct: 1031 -RLHGIIDRL-IVSDTAVLAVDFKTNQTVPSQPAACPEGILRQMGAYTHALKQ 1081 >gi|124022668|ref|YP_001016975.1| exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str. MIT 9303] gi|123962954|gb|ABM77710.1| possible exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str. MIT 9303] Length = 1103 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 75/776 (9%), Positives = 191/776 (24%), Gaps = 39/776 (5%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 L L E R P P L SV + V T + L + + G + + G Sbjct: 10 AEWLARVLAEQLRLAP--PGLFDSVDVVVNTWPTSRWLGEQLASVNGISALV--RFPFPG 65 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPIS 141 + + L + + P + + L L+ + +++ P Sbjct: 66 SRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNRQPSRPGHL 125 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 LA+++AD D K +++ L+ Sbjct: 126 NRVQWQLARSIADAFDDYALYRPKLIHQWLEGSDRLLNSSQEMPLTLRWQPLLLRLLAER 185 Query: 202 LNASSPVGYQIALMRAEA--EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 LN + +H + + G + P L+ ++ + + L Sbjct: 186 LNVEPFGIQVHRAVSKLRNGDHPAMALPSQLRLFGLSSLAPVQVELIQALSGLVDVQMFL 245 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED---------- 309 + + T + L +L + + + Sbjct: 246 LTPCPDLWQRCRSRRETLGNEWTEPADGFWLLEAPRLEAILGRMGAEFQQLLEGGGESQL 305 Query: 310 -VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNER 368 + G++ + + + + +++ ++ S + + + Sbjct: 306 GQWQEGDLFAAPATMACESGQEPTLLEQLQQQLVSPDDHQPLRRRQEDSSLQFLACPGQW 365 Query: 369 EEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-----ELTRFGINIDISAGI 419 + + + + + ++T N + Sbjct: 366 RQVQLVRDQILQWFAADPSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRLTDR 425 Query: 420 PLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRAKNALELV 474 + + + LL + A+ L+ +P F + Sbjct: 426 SQQDSPGLTQGMLQLLQIAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQRTGF 485 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 + + SL+ L + + L Sbjct: 486 RWGLDAEERGGDETHSLIWCLDRWLLGLVLPSTPGLAPGGAAPFAEGLEPAQLAKWWQLL 545 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 + + W +L ++ + D I Sbjct: 546 AQFSRQLKEFRRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQ----IGA 601 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 + A D++ + ++ + + L + R + ++L GL+ V+ Sbjct: 602 DCTLLLEAAVVADVLNEALSADSGRFGHRTGA-LTVSALEPMRAIPHRVIVLMGLDADVF 660 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPTIAS 713 P++ + F Q L + + + +HL+ T + R+ + + Sbjct: 661 PRHRERAGFHLLEQQRQLGDPRSSDQDRYV-LLEALMSTRQHLLITWNSRDEHTGECRPA 719 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 + + + +G C L+ + +P P Sbjct: 720 ASPVQQWLGRLQHELSDETFQGLCREPAANPLERSNFLSQGSQPPPSCDRRHFEAR 775 >gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 726 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 75/689 (10%), Positives = 173/689 (25%), Gaps = 117/689 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A E++ ++ G+ + D+ F + Sbjct: 60 GEILAVTFTNKAAGEMKERLGKMVGRAA---------HDLWVSTFHSAA----------- 99 Query: 105 NIQRLLELARLILIWRNKLPDI--IKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 L + R+ W P D + L + + ++D I+ Sbjct: 100 -----LRILRVYGEWVGLKPGFVVYDDDDQNTLLKEILKDLGLEAKPGAVRAVLDRIKNR 154 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + + + + + + L A + + H Sbjct: 155 LGGISEFLRDAPDYVAG---ILREDAALVYQRYQQSLRAQGAVDFNDLLLLAIELFENHP 211 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + P RL +A +V+ D + Sbjct: 212 EILHKVQQRARFIHVDEYQDTNPVQYRLTRLLAGENPNLMVV--GDPDQSIYGFRNADIN 269 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + G + S + Sbjct: 270 NILDFTKDYP--------------------------GAKVYRLEENYRSTSAILSLANAV 303 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRN 397 +N LE + ++ V L A N REEA +A + + + A++ Sbjct: 304 IAKNALRLEKTLRPVKGGGDPVCLFRAPNAREEAAFVAREIARLGNFG--QIAILYRTNA 361 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L R I + + + + D +++ +V P Sbjct: 362 QSRLLEEHLRRAQIPARLVGAVGFFERREVKDILAYARLAVNPLDSISLRRIVNVP---- 417 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 + L A + + + Q+ V + Sbjct: 418 --TRGIGASTVAKLLEHAQQHGI--PALEAFRQAEAILSRPQQVGAFVELVDELAEAAFE 473 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 ++ +L K ++ ++ + + W Sbjct: 474 TGPAEFLERVLDATDYKTFIKDEPDAEDRLANLEELLRA----------------ARDWE 517 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E G TL+ I T S + + ++ EK+ + ++ ++ Sbjct: 518 AEFGGTLAEFLDTIALTASIEEPAKR---------VQDGKLEAPREKAEEVTLMTLHNAK 568 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RH 696 L F + L G+ E + P + N E + + Sbjct: 569 GLEFPIVFLVGVEENLLPHRNSLNRL--------------EDLEEERRLFYVGITRAQER 614 Query: 697 LIYTRSLREN----NIPTIASRWLQRLLV 721 L + + T SR+L+ + Sbjct: 615 LYLSYAEEREIYGKRESTRPSRFLEDIPE 643 >gi|33863360|ref|NP_894920.1| exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str. MIT 9313] gi|33640809|emb|CAE21264.1| possible exodeoxyribonuclease V gamma chain [Prochlorococcus marinus str. MIT 9313] Length = 1103 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 77/779 (9%), Positives = 192/779 (24%), Gaps = 45/779 (5%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 L L E R P P L SV + V T + L + + G + + G Sbjct: 10 AEWLARVLAEQLRLAP--PGLFDSVDVLVNTWPTSRWLGEQLASVNGISALV--RFPFPG 65 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN-KLPDIIKDLYPESPLSLPIS 141 + + L + + P + + L L+ + +++ P Sbjct: 66 SRLRQLVRMILGIDSDAEDPWRASRLVWPLLDLLPQLLETEEAAPLREWVNRQPSRPGHL 125 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKYWT 196 LA+++AD D + +H L + + Sbjct: 126 NRVQWQLARSIADAFDDYALYR--PKLIHQWLEGSDRLLNSSQEMPLTLRWQPQLLRLLA 183 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 ERL ++ ++ ++ + + G + P L+ ++ + Sbjct: 184 ERL-QVEPFGIQVHRAVSKLRSGDNPAMALPSQLRLFGLSSLAPVQVELIQALSGFVDVQ 242 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED------- 309 I L + + T L +L + + + Sbjct: 243 IFLLTPCPDLWQRCRSRREMLGHQWTEPADGLWLLEAPRLEAILGRMGAEFQQLLEGGGE 302 Query: 310 ----VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + G++ + K + + +++ ++ S + + Sbjct: 303 SQLGQWQEGDLFAAPATMACESGKEPTLLEQLQQQLVSPEDHQPLRRRQEDSSLQFLACP 362 Query: 366 NEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKL-----ELTRFGINIDIS 416 + + + + + + ++T N + Sbjct: 363 GQWRQVQLVRDQILQWFAADPSLEPRDVLVMTPQVNRFAPLLASVFNDAAATGVELPWRL 422 Query: 417 AGIPLSTTL-HSSILTSLLNAIFKLNDFMAIATLVKHPLA----KFGFPEKYLSRAKNAL 471 + + + LL + A+ L+ +P F + Sbjct: 423 TDRSQQDSPGLTQGMLQLLQIAGERLTATALEGLLANPAIQQQQGFSQDDASSLSRCLQR 482 Query: 472 ELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCI 531 + + SL L + + Sbjct: 483 TGFRWGLDAEERGGDETHSLSWCLDRWLLGLVLPSTPGLAPGGAAPFAEGLEPAQLAKWW 542 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 L + + W +L ++ + D Sbjct: 543 QLLAQFCRQLKEFRRARTCGAWVELLQGFVEELFGDGGSWAWERQCLLIALEDWRQ---- 598 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 I + A D++ + ++ + + L + R + ++L GL+ Sbjct: 599 IGADCTLLLEAAVVADVLNEALSADSGRFGHRTGA-LTVSALEPMRAIPHRVIVLMGLDA 657 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-IPT 710 V+P++ + F Q L + + + +HL+ T + R+ + Sbjct: 658 DVFPRHRERAGFHLLEQQRQLGDPRSSDQDRYV-LLEALMSTRQHLLITWNSRDEHTGEC 716 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 + + + + G C L+ + +P P Sbjct: 717 RPAASPVQQWLGRLQHELSDETFEGLCREPAANPLERSNFLSQGSQPPPSCDRRHFEAR 775 >gi|323698852|ref|ZP_08110764.1| hypothetical protein DND132_1441 [Desulfovibrio sp. ND132] gi|323458784|gb|EGB14649.1| hypothetical protein DND132_1441 [Desulfovibrio desulfuricans ND132] Length = 858 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 81/779 (10%), Positives = 187/779 (24%), Gaps = 65/779 (8%) Query: 250 ANHPNGAIVLPGLDCHIPTAIWNT-ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRE 308 A+ + A L + A W+ + + LA+ +D + + Sbjct: 80 ADAWSTARHLLAELDGLRMAGWDGSAETTGRLRELRDAARAAELSPGLAERIDAIGARIA 139 Query: 309 DVKRLGNVSNEMYGRSMVISKSFLP--PDTSDMRNTDILENKIPNIQKCFSDVALIEADN 366 D G S + + ++ + I ++ + Q + Sbjct: 140 DWGLGGLSSLTLEAELRLWPSAWRRLFARLEEAGVRLIEQDGVLRGQGFPEGNSPAVRVL 199 Query: 367 EREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 L LD + ++ + + + L R G+ + + T Sbjct: 200 RTTSLEEAGELLASWLDTHPSPEDVVLLAESDGQSLDTALRRQGLPVTGQSARSAQRTAL 259 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIM 486 +L L ++K A+ L+ PL+ L G + + Sbjct: 260 -QLLPIGLALLWKPFSPSALIDLLTAPLSPIHPVLARHL-LDALTAHPGLGGPRWEKALA 317 Query: 487 DLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCG 546 R + V W + + T Sbjct: 318 RCAEWAAGRENGRDLLEEVAFWTGLSRHDQRSPV------------------DAGAVTAV 359 Query: 547 NLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWI 606 +SDW ++ ++ + + Sbjct: 360 CGRLSDWAGRMAA------------PDRADVLAAVSAMAGEMAETLALTGMDAVTKAQLS 407 Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSR 666 I+ ++ G P+ +++ ++ TL+ +E P+ R Sbjct: 408 RILDSVVGGGVKGPERAEAAPWAVVSRPGQVRGPVGTLVWWNFSETQPPRLFLPWTGDER 467 Query: 667 VMQSDLNLKTAEKYIGQAAHDFEM---ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + + ++ L Sbjct: 468 ATLGRGGADLRDFDHARQMEVRSWKAPLRHAESVLLVLPDSVRGQAVAPHPLWDELTAAL 527 Query: 724 GTDFFDN-LKKRGQCYLDWTRKL----------DYTTKQPHYKRPKPFPPLEAQPRTYSF 772 G + + LD +L + A+ S Sbjct: 528 GEAVLEAGTIRAADVLLDPAPELLGCPLSLTDVRPGNPVAPLADWRLPQGPAARRPRESP 587 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 S + + P + + + IL++ + G H ++ L+ ++ + E Sbjct: 588 SGLINFLGCPLSWFLKYILRIRPGNLAEPPEGGQLYGNFCHRLVELLVGEKTDWTPSEAR 647 Query: 833 HLMKQIIDSHFEKENLP---PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 ++ D+ + P P + K + +I + I + + Sbjct: 648 ARADRLFDALVAQMAAPLNEPGRETTLLVFREKALDAVECLFARILKAGLSIHASEQENV 707 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALKAG 947 + G G+ D + G D K ++E ++ QL+ L Sbjct: 708 RRDQAGQEFVGYVDLVLKDGHGAEIPWDMKWSSTSRHRREEMEQGRALQLAAYCWLL--- 764 Query: 948 SFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQ 1006 + Y L Q+ I + ++ E + G+ Sbjct: 765 ------GGDGKDAAYFMLNQRELISTDA--PWAEERESVAADLPGLWTEALEAYHAGQA 815 >gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] Length = 1123 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 81/829 (9%), Positives = 189/829 (22%), Gaps = 100/829 (12%) Query: 159 IETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNASSPVGYQIA--L 214 + E + L L +K A FL + L + + Sbjct: 313 LRVEAARPARLALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTDPA 372 Query: 215 MRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPNGAIVLPGLDCH 265 + A + + G I++ + + P +++ +A + D Sbjct: 373 VAAWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFVVGDKK 432 Query: 266 IPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + + + + + + + + Sbjct: 433 QSIYSFQGADPREFDRMQQEFGLRLSATNTPLQSRVLAYSFRSSRAILTTVDCCFDQSSE 492 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 S LP + + P D+ D A +A Sbjct: 493 SGFTPEEGHKAFFDTLPGRVDLWPLVEKPDEDEPPAWHMPVDIRATN-DPAILLARQVAA 551 Query: 377 ALRMSLD-----------------ENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 A+R + + L+ L + E G+ I + + Sbjct: 552 AMRDMITARQAIPDPKSPSGFRAVQPGDFLILVRRRSALFHEIIRECKAQGLPIAGADRL 611 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 + L L +LL+ + D +A+AT ++ PL + + Y + Sbjct: 612 KVGAELAVRDLEALLSFLATPEDSLALATALRSPLFGWSEHQLYTLAQGRNRPYLWEELR 671 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + D +++ D + + R+ + LL + + Sbjct: 672 ARAAEHPDTITILRDLL-DHADFLRPYDLIERVLTRHEGRRRLLARLGTEAEDGIDALLA 730 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + +W E + + + Sbjct: 731 QAMAYERR------------------AVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMT 772 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 + + ++ ++ V + G D Sbjct: 773 VHGAKGLEAPVVILPECGVWRTPPAPQIVTQAGHALWTGRADD----------------- 815 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRW-LQR 718 + + + L+ + + + + + + +QR Sbjct: 816 ----MPPSLAAALDTERRALLAERDRLLYVAMTRAETWLIVAAHGDLGKQGDTWYEKVQR 871 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 ++ G G T P Q + IK L Sbjct: 872 GMLAAGAQPHSFAHGPGLRLDHGIWAETETDSAPSAPPQTITLDPLFQRPAPLPARIKTL 931 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 K + RG H ++ L + L+ Sbjct: 932 SPSDLG-----GAKALPGERGLDEEAAKRRGRQIHRLLEFLPTVPAHDWPATAARLLSNG 986 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIH 897 D+ +E + L + + ++ + G Sbjct: 987 GDAATGEELALLLAEA----------DKVLTRPSLLALFTPAALTEVAITATLDPLQGRR 1036 Query: 898 LTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAAL 944 + G DR+ ++ + D+KT + Q+ A AL Sbjct: 1037 IHGVIDRL-IIDDTRILAVDFKTNALVPDTPADCPDALLRQMGAYAHAL 1084 >gi|312142658|ref|YP_003994104.1| hypothetical protein Halsa_0271 [Halanaerobium sp. 'sapolanicus'] gi|311903309|gb|ADQ13750.1| hypothetical protein Halsa_0271 [Halanaerobium sp. 'sapolanicus'] Length = 869 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 66/428 (15%), Positives = 139/428 (32%), Gaps = 54/428 (12%) Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 + ++ + + +++ N+G PK + FLS L+L+ E + +DF Sbjct: 467 VVKKMEQTPYKSRERVLMINANQGCLPKEFRIDTFLSEADLKGLDLELKEVNYLKQKYDF 526 Query: 689 EMAN-GTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 + +N T +S +++ L + + ++ + + + +L Sbjct: 527 FSHIFNAKQSELFYIENIDNN-TTSSPFIEELKLRYQIEDTES-EYQSSRQKEILARLFK 584 Query: 748 TT----------KQPHYKRPKPFPPLEAQPRTYSFS--EIKQLINDPYAVYARRILKLD- 794 K+ + + + S S ++ L P+ Y I ++ Sbjct: 585 ADGYKNYQSQFSKKLLQEDEMLIELEDFPQQKLSISHYRLENLKRCPFKFYMNDIANIES 644 Query: 795 FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHI 852 + G++ H+ I++ ++ I+ EK +L + Sbjct: 645 EKLEVDRQLSMLMIGSIAHDFFEHCIEEFGIPLKNCSRTKLEAILKEKLEKYDLQIHDYF 704 Query: 853 DIIWRHLF-HKISHSFLEHEEKIQSSIEKIFVNIPAKMAI---------ESIGIHLTGFA 902 + + + S ++ I S IEKI V ++ + E I +++G Sbjct: 705 KKYYHAILFDNLIDSLFSLDKSISSRIEKI-VEAETELNLKKHDIFKSEEGISAYISGRP 763 Query: 903 DRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFY 962 D + + G I D KTG QL+L + L +F D Y Sbjct: 764 DILIEAEDGSNYIIDLKTGS---------GSMEQLALYSLML---NFKDRDFSTTVKAIY 811 Query: 963 IRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 + + +ID ++K L K + L E+ Sbjct: 812 KIMDNELEIDRKDREEK------LEIKIKEELSELFEE-------QRYKTIYKSDCKKHC 858 Query: 1023 EYDHLARV 1030 +Y + RV Sbjct: 859 DYYEICRV 866 >gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380] Length = 737 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 76/720 (10%), Positives = 183/720 (25%), Gaps = 122/720 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--V 103 V T +A E+R + G + I + D + Sbjct: 54 QVLAVTFTNKAAAEMRERLQSLVGNIDGL--WISTFHAACARILRRDGEVLGYGRDFTIY 111 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + + + + R D+ + +A ID + Sbjct: 112 DDQDQQRLIKDCLAQLRITEKDLKP---------------------RAVATAIDQAKNRG 150 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH-- 221 E + + + + +RL + NA + +R E+ Sbjct: 151 LLPE---EYIPGDHRGEQVA------RVYELYQKRLQQANALDFGDLLLQTVRLFREYSH 201 Query: 222 ---LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + +++ + ++ +A+ +G + D W + Sbjct: 202 IRDAYRRRFAHLLVDEFQDTNQVQYAMVKALAD--DGRHLCVVGDDDQSIYAWRGAEIGN 259 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + ++ + +L ++ G V GR Sbjct: 260 ILNFERDFPGAS-----VIRLEQHYRSSATILEAAGEVVACNIGRK-------------- 300 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADR 396 + + L ++ EEA +A + D + + A+ Sbjct: 301 -------GKTLWTDNPAGEPLTLEPLPDDLEEARFVAAEIARLRDAGRHLRDVAVFYRTN 353 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R ++ L R G+ + G+ + + + L A+ D ++ +V P Sbjct: 354 AQSRVLEETLVREGLPYVMVGGVKFYARMEIKDVLAYLRALANPADSLSARRIVNVP--- 410 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + ++ RIA + RL E Sbjct: 411 ----------------------------SRGIGAVTTGRIAEHEEEAGGFLAACRLCLER 442 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + + + +D + + + Sbjct: 443 GVLKGAAAKKVAAFSAFMERFAQRMTEVPFPQLTADLLEESGYAPNLREEAQSAMTEGER 502 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 E +G+ +++ +A + + ++ + + + ++ + Sbjct: 503 KEAKGR--LENLEQLLAGMEEHQATESSLQEYLEQVALVTDLDSYDTRLDRVTLMTLHAA 560 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-R 695 + L F + + G+ EG++P A + + + + Sbjct: 561 KGLEFPVVFMTGMEEGIFPHGRAAGE--------------RDDVEEERRLCYVGMTRAMQ 606 Query: 696 HLIYTRSLRE----NNIPTIASRWLQRL-LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 L T + R + SR+L + L G L+K L + T Sbjct: 607 KLYLTHARRRRIYGDYQYNAPSRFLAEIPPHLMGDKPAPALQKPATHNLASVFEQIEPTP 666 >gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] Length = 1054 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 82/796 (10%), Positives = 200/796 (25%), Gaps = 66/796 (8%) Query: 174 NEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR----AEAEHLMKGTKGP 229 + + + + ++ E+ + L+ ++ Sbjct: 276 HRDIRDYLSKIFSVASLTLGIYQQQKQEMGLVDFADQEFRLLEGLDNPLVRSHLEEKLHL 335 Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 +++ + P L +++ D + + + Sbjct: 336 LLVDEFQDTSPIQLALFLKLSSLARRT--FWVGDIKQAIYGFRGGDARLMQAVLNFLPDG 393 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 + + L V L N ++ RS + + + R + Sbjct: 394 S---------KEVLGQSWRSVPSLVCAVNAVFCRSFGETLARENIELMPERQEHSSQGSC 444 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRM-------------SLDENKKKSALITADR 396 + ++ EA++ + + A+++ Sbjct: 445 FRWDLGAGGLE------QQYEALAAGVQRLVDEGFEVFEKKEEVWRKVRFGDIAILSRTN 498 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +++ L + GI +A L + LT+ L + +D +A A L LA Sbjct: 499 AHVQKIAAILKQNGIPAA-TAQPGLLGSPEGLFLTAGLRRLIDPSDTLATAELYS--LAT 555 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 PE +L + LE L + ++ P + Sbjct: 556 CSEPEVWLQNRLDDLESGNDPDRWLEEGKNAHPVLREIALLRDRSLVLSPFDVVKALVSA 615 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 A L+ + S+ + W Sbjct: 616 TGAARYLLAWCR-------DVDMARMRLSNMQSLLQLAGEYEEECDTKGGTATLQGLVHW 668 Query: 577 FEEEGKTLSSLFSKI-IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 +E+ + LF + + + + + ++ ++ + S + Sbjct: 669 YEQLAAEENDLFPEPPVNAVRVLTYHTSKGLEWPVVVLLDLDKPGNADLCSPVIDSPQDV 728 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 + L V+QS + AE ++A +A Sbjct: 729 DAGAPLKDRFIRFWPSPFVKSEPFPG--LESVIQSREARQAAELSRDESARLLYVAMTRA 786 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 + + D L + L+ +T Sbjct: 787 RDCLVLGTSSKSKSFPWLEQAGAACFVTDEDDGIVLPDGSRLPCKRWENLNESTLLNPAG 846 Query: 756 RPKPFPPLEAQPRTYSFSEIKQ----LINDPYAVYARRILKLDFIPHFKKDPDRTDRGTL 811 + + A S +Q L+ A + + + + T++GT+ Sbjct: 847 KERTPLFWYAPVEPPSERLPEQVVPSLLRAETEATAVESIVYSGTMNLHGNMEATEKGTV 906 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 H+I+ + + + + ++ + P + F ++ Sbjct: 907 VHDILAFALTQEPDVCDAASVATL---LEGYGAAALCEPESLVRQLGEFRRMLS------ 957 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 + + P + + + L G D + + G I D+K + + QK Sbjct: 958 -ERWPDCMF-HIEAPVEQLLPVEQV-LKGQIDLLLETRRG-WVIIDHKITTIERCQWEQK 1013 Query: 932 L--IDPQLSLEAAALK 945 QL AL+ Sbjct: 1014 AIEYSGQLFAYKQALE 1029 >gi|38233839|ref|NP_939606.1| hypothetical protein DIP1251 [Corynebacterium diphtheriae NCTC 13129] gi|38200100|emb|CAE49780.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 288 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 82/268 (30%), Gaps = 32/268 (11%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKN 827 S S P R I KL +GTL H ++ E+ R + Sbjct: 12 ALSPSRANDYQQCPLLYRFRAIDKLPEPKTV-----AQVKGTLVHAVLEEMHGWPRNERL 66 Query: 828 TPEINHLMKQII------DSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 P +K D+ + + E + + + Sbjct: 67 FPAAVKRLKPHWSLMCSKDTELVSLVPEEDTYDF-LVECRSLLRGY--FEMENPQGFDAL 123 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + + G+ + GF DR+D +G + + DYKTG P +Q+ Q+ A Sbjct: 124 ACEMYVNATLP-NGVPIRGFIDRVDKAPTGEIRVVDYKTGKKPIPRFSQQA-QFQMRFYA 181 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 + +I + L Y+++ D + + + + +IVT Sbjct: 182 LVYWR-IYGRIPDQ--LRLMYLKVA-----DSMFLTPSREELEYFERDIQELWEKIVT-- 231 Query: 1002 QNGEQPFISHLRLS-EKSNIQSEYDHLA 1028 +GE R K + +L Sbjct: 232 -DGETG---QFRPKTSKLCGWCSFQNLC 255 >gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] Length = 770 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 93/730 (12%), Positives = 181/730 (24%), Gaps = 118/730 (16%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R + G +P + + + + Sbjct: 74 SEILAVTFTNKAAREMRERVGRMIGPAVEGMPWLGTFHAIAAKM---------------- 117 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + L W A+ LA +ID + + Sbjct: 118 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLAGLIDQWKNKGL 174 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 E++ A ++E Y + RL ++NA + ++ H Sbjct: 175 TPEEIGAGESEAYANGRGQKL------YAAYQARLRDVNACDFGDLLLHVLVILKRHRDV 228 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + + +A + D W + Sbjct: 229 LESYQQRFRYIMVDEYQDTNSSQYLWLRLLAQTRKNICCV--GDDDQSIYSWRGAEVANI 286 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L + V E R Sbjct: 287 LRFEKDF-----PGAKIVRLEQNYRSTPHILGAASGVIAENGNR---------------- 325 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397 L + V +I + EEA + + + A++ ++ Sbjct: 326 -----LGKTLWTDIDVGEKVRVIGVWDGPEEARRVGDEIESIERNGGSLDEVAILVRAQH 380 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 R + + G+ I G + L + + D +A +V P Sbjct: 381 QTREFEDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 440 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G E + L L + P + L Sbjct: 441 GDKAVEKLHRLARAEGI---------------PLALAAARILDTDEMTPQARRSLGAFIG 485 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 +LA L +++ L + T + + Sbjct: 486 DLARWRDRAAQLPHAELARQILDESGYTAMLQ----AERTTESAGRLENLNELTRAMEEY 541 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E G L + + + I+ ++ Sbjct: 542 ETLGAFLEHVSLVMDNEA--------------------------QADERKITIMTIHAAK 575 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FDT+ L G EG++P A + LN E+ + A L Sbjct: 576 GLEFDTVFLAGWEEGIFPSQRALDE-------GGLNSLEEERRLAYVAITRARKLC---L 625 Query: 698 IYTRSLRENNIPT---IASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 I + R I SR++ L + +W+ K D Sbjct: 626 ILHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSEKADPFANVQRG 685 Query: 755 KRPKPFPPLE 764 P Sbjct: 686 SGRGPGWQRA 695 >gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] Length = 1119 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 87/841 (10%), Positives = 201/841 (23%), Gaps = 110/841 (13%) Query: 153 ADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA-DFLKIASKYWTERLVELNASSPVGY- 210 A+++ ++ + ED+ + A F + + + + Sbjct: 301 AELMGRLDPVMQTVEDIRPAVIAQLAYERTRALYAFATPFCRAFETKKLSRGLLDFDDLI 360 Query: 211 ---QIALMRAEAEHLMKGTKG----PIIIAGSTGSIPATARLMSTV---------ANHPN 254 + L + I++ + + P R++ + A Sbjct: 361 LKTRALLEDRALAQWVLFRLDGGIDHILVDEAQDTSPDQWRVIERLTDELAAGRGAGEDR 420 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----------THPQYSLAKLLDFLD 304 + D + + T Q+S L Sbjct: 421 ERTLFVVGDKKQSIYSFQGADAEMFEAKRELFTDRLATGGGKLHSQPLQFSFRSAAAILQ 480 Query: 305 IKREDVKR-----LGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + + L V ++ + + L P + TD + Sbjct: 481 LVDATFQGDLREGLDPVVYHRTFKTELPGRVDLWPVEPEAEKTDTDAPWYKPVDHVSEQH 540 Query: 360 ALIEADNEREEAISI------------AIALRMSLDENKKKSALITADRNLARRVKLELT 407 ++ E I + L+ L + Sbjct: 541 HDVKLARRVAEQIQTLINRKATIPVEKGGRILRRPIHEGDILILVQRRSTLFAEIIRACK 600 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 + G+ I + + + L L +LL + D +++A ++ PL + E + Sbjct: 601 KLGLRIAGADRLRVGAELAVRDLAALLRFLALPEDDLSLAAALRSPLFGWTEQELFTLAH 660 Query: 468 KNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHI 527 + ++S D + + D + Q + SR+ LL Sbjct: 661 HRR--GLLWSALRDSDDHPETLKTLRD-LRAQTDFLRPYDLLSRILIRHGGRQKLLDRLG 717 Query: 528 LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSL 587 + + + W E E + Sbjct: 718 AEAEDGIDALLAQALAYER------------------STVPSLTGFLSWMETEDVEVKRQ 759 Query: 588 FSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILG 647 + E + + + ++ ++ V+ + + Sbjct: 760 MDEQGERIRVMTIHGAKGLEAPVVILPETGVRQTQSDTRSAIWPL--------------- 804 Query: 648 GLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN 707 L +Q + + + + + Sbjct: 805 ----EDVVAWRPSTDRLPAALQDARAKLVEAEERERRRLLYVALTRAEKWLIVCGAGKIG 860 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK-RPKPFPPLEAQ 766 S + L + + G T P +P P Sbjct: 861 KEVGDSWYGMVEAGLERLGALPHPQPGGDGLRYETGDWSAPDLAPPEPDAAEPVAPPNFA 920 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P + ++ L P + ++L D ++ +RG H ++ L Sbjct: 921 PVALPPAALQTLS--PSDLGGAKVLPGDPAGGDREA--ALERGNQVHLLLEHLPGTLP-- 974 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ +L P + R + + L + EK +P Sbjct: 975 ------------LERANVALSLFPDLPAPERQSLLTDAEAVLSAP-GLAELFEKGLAEVP 1021 Query: 887 AKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAA 943 + + G L G D + + + + D+KT E + + Q+ AAA Sbjct: 1022 VTATLAELNGARLHGTIDLL--IPGEPLRVIDFKTNRLVPKTPEEVPEGLLRQMGAYAAA 1079 Query: 944 L 944 L Sbjct: 1080 L 1080 >gi|254385059|ref|ZP_05000393.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194343938|gb|EDX24904.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 279 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 81/270 (30%), Gaps = 32/270 (11%) Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 A+P + S S + P R I KL RGTL H ++ L Sbjct: 3 AARPSSLSPSRAGDFMRCPLLYRFRVIDKLPEK-----PSAAATRGTLVHAVLERLFDHP 57 Query: 824 INKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + T + + E W + + E+ Sbjct: 58 AEERTAPRAKALIPGQWDRLLEAKPELSELFPEGDEGAGLARWLTEAEALVDRWFTLEDP 117 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 + +E + + +ES G+ L G DR+D+ SG V I DYKTG P+ + Sbjct: 118 TR--LEPVEREFFVETELES-GLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP-EYAEGA 173 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 Q+ A + + L + L + E+ + Sbjct: 174 LFQMKFYALVVWR-----LKGVVPRRLQLVYLGSGDVVTYDPVVAD-------LERVERK 221 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 L+ + ++ + R ++ + Sbjct: 222 LLALWDAIREATETGDWRPRPTK-LCGWCD 250 >gi|145219722|ref|YP_001130431.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Prosthecochloris vibrioformis DSM 265] gi|145205886|gb|ABP36929.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Chlorobium phaeovibrioides DSM 265] Length = 1074 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 97/939 (10%), Positives = 235/939 (25%), Gaps = 101/939 (10%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 L++ +P L I V ++ + L E E G L D Sbjct: 14 LVSELAGRLSGRRLSSP--LTEEIIVVQSRGMQRWLSIELAEKNG---IWANSRFPLPDT 68 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + + + + Q + ++ L D S LS Sbjct: 69 LVRECFRIFFSEVDTSRYFGVQQMTWNIMTILPP----LLDEPPFAAIRSYLSFDGEGLR 124 Query: 145 AIWLAKNLADIIDIIETEEKK-WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 LA+ A I + + + + EK W W + Sbjct: 125 LYQLAERAAAIFNEYQFYRPDLLQRWESGGEEKGEGLWQSIL---------WKSLVAGSG 175 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLD 263 P+ + M G I + G + ++S ++ + + + Sbjct: 176 GVQPLWALKDEFCRGLKLPMSGFPERISLFGISYLPKFHLDILSALSRVTDITLFVLSPT 235 Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 I T+ ++ +P + + + + ++ Sbjct: 236 SDFWADIMARKTQARLSVEERIYRNEGNPLLASLGHMGR-EFSSLMQDLADSAEMQLEAY 294 Query: 324 SMVISKSFLPPDTSDMRNTDILENKIP--NIQKCFSDVALIEADNEREEAISIAIALRMS 381 ++ L +DM + + S V + + E + +L Sbjct: 295 EEPGEETLLRSLQTDMLHLQGAGADAAPRPLPPNDSSVQIHSCHSPLREVEVLHDSLLSF 354 Query: 382 LDEN----KKKSALITADRNLARRVKLELTRFGI------NIDISAGIPLSTTLHSSILT 431 + + ++T D + G ++ ++ +S + Sbjct: 355 FETYRDLEPRDVLVLTPDIETYSPYISAVFGAGNHGETRIPFTVADRSMMNEGDIASAIA 414 Query: 432 SLLNAIFKLNDFMAIATLV-KHPLAKFGFPEKYLSRAKNA-----------LELVALRGN 479 +LL+ + L+ + P+ + + E L Sbjct: 415 ALLDLATSRLGAAEVFDLLSRLPVRRRFALDDDAQECIRRWIEKTGIRWGLDETDRLNAG 474 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 SY ++ + + + L +D + + + + + + Sbjct: 475 VPSYRQNSWRAGLDRLLLGYAMPDEGSLYGGILPYDDID--ASFAETLGIFASFVDALER 532 Query: 540 NKNSTCGNLSISDW-TKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ +W + D + TL LF++ + Sbjct: 533 LSERLNEPETLQEWRLVFLGMLDDFIVADADSEREYSEMLAIADTLGELFNETLHKE--- 589 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + + + ++ + L R + F + L G+N+ Sbjct: 590 PVSPEVFTSWVRSKLEERRQNLGFMTG-GVTFCAMLPMRSIPFRVICLLGMND---AAFP 645 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE--MANGTRHLIYTRSLRENNIPTIASR-- 714 ++ S + S + + F M + L + + + S Sbjct: 646 RQHHAPSFDLVSSNPRPGDRSLRNEDRYLFLEMMLSARDLLYISYVGQSVRDNSSLSPSV 705 Query: 715 -------WLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP--------------- 752 ++R+ L + ++ + Sbjct: 706 LVVELLDAIERVFSLSDGSSIADRLTVRHRLQAFSPAYFDSAGPLFSYSEDNFHALSSRT 765 Query: 753 ------HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP---HFKKDP 803 +P + S E+ + +P A + L + Sbjct: 766 YGGGERPPFVDEPLGVPGDETCVVSLDELIRFYGNPAAFFLESTLAIRQNRLMTPLIDRE 825 Query: 804 DRTDRGTLFHNIITELIKKRI-NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 + G + I EL++K + + +I L + P I Sbjct: 826 PFSIEGLDAYMIREELLEKILQGSDPSDILPLFQARG------IIPPSGIGERLFASMAT 879 Query: 863 ISHSFLEHEEKIQSSIEKIFVNI-PAKMAIESIGIHLTG 900 S +F +++ + + P + ++ G LTG Sbjct: 880 ESAAFAA----RLTALTEGAAELPPLPVNLDIGGFRLTG 914 >gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 758 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 81/737 (10%), Positives = 183/737 (24%), Gaps = 116/737 (15%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R+ + G +P + + + Sbjct: 62 SEILAVTFTNKAAREMRARVGAMIGDAVEGMPWLGTFHAIAARM---------------- 105 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + L W A+ L +ID + + Sbjct: 106 -LRRHAELVGLQSNFTILDTDDQLRLMKQ--LIQAEGIDEKRWPARQLGGLIDQWKNKGL 162 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 +++ A + + + RL ++NA + ++ H Sbjct: 163 TPDEVSA-GEAEGYAHGKG-----QKLYAAYQARLRDVNACDFGDLLLHVLTILKMHRDV 216 Query: 225 GTK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + + +A + D W + Sbjct: 217 LEQYQQKFRYIMVDEYQDTNSSQYLWLRLLAQERKNICCV--GDDDQSIYSWRGAEVANI 274 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P ++ +L + V E R Sbjct: 275 LRFEKDF-----PGATIIRLEQNYRSTPHILGAASGVIAENGNR---------------- 313 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397 L + V +I + EEA I+ + A++ ++ Sbjct: 314 -----LGKTLWTDIDVGEKVKVIGVWDGPEEARRISEDIEAIERSGGSLDDVAILVRAQH 368 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 R + + G+ I G + L + + D +A +V P Sbjct: 369 QTREFEDRFIQIGLPYRIIGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGL 428 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + + + Sbjct: 429 GDKAVEKLH------------------------------RLARAQGIPLTLAAARILDTD 458 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 EL + I L ++ + L Sbjct: 459 ELTPQARRSLGAFIGDLARWRDRAGQLPHAELARQILDESGYTAMLQADRTTESAGRLEN 518 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E + + +++ ++ ++D E + + I+ ++ Sbjct: 519 LTELTRAMEEYDTLGA-----------FLEHVSLVMDNEA----QAEERKVTIMTIHAAK 563 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F+ + L G EG++P A + + L + E+ A A + Sbjct: 564 GLEFEHVFLAGWEEGLFPSQRALD---------EGGLNSLEEERRLAYVAITRARRRCTI 614 Query: 698 IYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 ++ + R +I SR++ L + +W+ + D Sbjct: 615 LHAANRRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANWSEREDPFANVARGT 674 Query: 756 RPKPFPPLEAQPRTYSF 772 P +S Sbjct: 675 GRGPGWQRAQSSGQFSA 691 >gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1210 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 93/849 (10%), Positives = 225/849 (26%), Gaps = 104/849 (12%) Query: 184 AADFLKIAS----KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAG 234 + LKI K + + + A ++ E+ + +++ Sbjct: 356 LLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDE 415 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-Q 293 + RL++ ++ NG D + + N + T+P Q Sbjct: 416 YQDNNHMQERLLTLLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQ 470 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI- 352 L L + + E ++ V + S+ + + Sbjct: 471 GKLILLKENFRSQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSIGQKIASPEHRAK 530 Query: 353 -----QKCFSDVALIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVK 403 C + + +AD+ E +A + +E + L+ + R + Sbjct: 531 LLLYNTDCEDHLDIEDADDISPSEVTIVAKEIIRLYNEQHVPFEDITLLVSSRTRNDAIF 590 Query: 404 LELTRFGINIDISAGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 ++GI + G ++ ++ L I + A+ L++ P+ F E Sbjct: 591 HTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDEL 650 Query: 463 YLSRAK---NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + + + + ++ + K + + +S Sbjct: 651 TRLALQQGDDKEADCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRS 710 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNL 575 L+ I + + +++ Q+ + L Sbjct: 711 LYDLIWKIFNDRFYFDFVGSQVKAEQAQVNLYALALRANQFEQSGYKGLSRFIGMIDKVL 770 Query: 576 WFEEEGKT--------------------LSSLFSKIIETGSCIKANAIEWIDIITRL--- 612 + + L + ++ + I++R Sbjct: 771 ETQNDLADVEVASPKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDVHAPFILSRQQGI 830 Query: 613 ----IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-------------- 654 + + + ++ + LN L L L+E + Sbjct: 831 GIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIY 890 Query: 655 ---PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENN 707 + K+ + + +L A + + D+ +A L + E + Sbjct: 891 LIGKASKEKSQEFTDGKRLGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEES 950 Query: 708 IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQP 767 + + + + D + ++ L+ ++ P P Sbjct: 951 ELSPEAIGHLQSQQVLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTP 1009 Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD----PDRTDRGTLFHNIITELIKKR 823 + L +D V + L+ + + + G H ++ + + Sbjct: 1010 SQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLPEFSKQVKVEASQVGLALHRLMQAIPLTK 1069 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS--IEKI 881 + I +++I K L K+ F E +S + Sbjct: 1070 P-ISLATIAQALEEIEAEAVVKAALD----------LQKVEQFFTETALGKRSQTYSTNL 1118 Query: 882 FVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQL 937 + P + + + G D LL +++ DYKT + QL Sbjct: 1119 YREAPFAILKKDPLSQEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQL 1177 Query: 938 SLEAAALKA 946 L A AL Sbjct: 1178 ELYAEALSQ 1186 >gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] Length = 1162 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 66/630 (10%), Positives = 151/630 (23%), Gaps = 39/630 (6%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATAR 244 + R ++ R + + +++ + A Sbjct: 242 DLVADYRARKRTADSLDFGDQVALAARIARDVPEVGAAERERFRVVLLDEYQDTSYAQLV 301 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ + G V D H W + Sbjct: 302 LLQAL--FTAGHPVTAVGDPHQSIYGWRGASPGGLARFPGAFPVVE------KGPDGRER 353 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + DV L + P T R P V + A Sbjct: 354 RRPADVVPLSTSWRNDIAILDAANAVAAPLRTGGARVDVP--RLAPRPGAGDGLVQALVA 411 Query: 365 DNEREEAISIAIALRMSLDENK-----KKSALITADRNLARRVKLELTRFGINIDISAGI 419 +EA ++A + + +A++ R+ ++ L G+ +++ Sbjct: 412 QTVEDEADAVAAWVARWWRPAHHPAGARTAAVLCRKRSQFEPLRRALRAAGLPVEVVGLG 471 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 L T L ++L A A+ L+ + G + + Sbjct: 472 GLLATPEVVDLVAVLQAAHDPTRGDAVVRLLTGARTRLGASDLHALGEWARQGARPTGRP 531 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + + E L+D + ++ Sbjct: 532 GGAPGVEADVVDERSLVDALDAPPPPGWRSPSGRTVTPEGRRRLLD-----LAAVLRAVR 586 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 + + +L ++ + + +++ F++ + + Sbjct: 587 AHQGLSLPELVGEAERLFGLDIEVQARADVTPGRARAHLDALADVAAEFARGADRPTLGA 646 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 A W++ DG + + + ++ L +D +++ G+ +G P Sbjct: 647 FLA--WLEAADAREDGLELPVTEPDPDAVQVTTVHAAKGLEWDAVVVAGMVDGGLPATAM 704 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + L + A D P + L+R Sbjct: 705 LGKDGPKDSAWLTGLGVLPYPLRGDADDLPRLECA----------GAESPKELAERLERF 754 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRK--LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQ 777 + G ++ L R+ L K P+ P +E+ Sbjct: 755 RLDAGDHEVAEERRLAYVALTRAREALLLTAAYWGDAKAPRQASPFLTDLMDAGLAEVVG 814 Query: 778 LINDPYAVYARRILKLDFIPHFKKDPDRTD 807 +P + L + DP D Sbjct: 815 RAEEPDPKASNPRAALTPTAQWPADPFARD 844 Score = 58.0 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 78/743 (10%), Positives = 165/743 (22%), Gaps = 77/743 (10%) Query: 206 SPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCH 265 P G + A + + + + AG P + + P ++ L Sbjct: 434 HPAGARTAAVLCRKRSQFEPLRRALRAAGL----PVEVVGLGGLLATPEVVDLVAVLQAA 489 Query: 266 IPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + T + H A+ R + G E Sbjct: 490 HDPTRGDAVVRLLTGARTRLGASDLHALGEWAR-----QGARPTGRPGGAPGVEADVVDE 544 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN 385 L + P ++ D+A + + +S+ + + Sbjct: 545 RSLVDALDAPPPPGWRSPSGRTVTPEGRRRLLDLAAVLRAVRAHQGLSLPELVGEAERLF 604 Query: 386 KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 + R + L A + + L A D + Sbjct: 605 GLDIEVQARADVTPGRARAHLDALADVAAEFARG--ADRPTLGAFLAWLEAADAREDGLE 662 Query: 446 IATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHV 505 + P + A LE A+ + +++ Sbjct: 663 LPVTEPDP----DAVQVTTVHAAKGLEWDAVVVAGMVDGGLPATAMLGKDGPKDSAWLTG 718 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 D + L + L G+ +++ +L L Sbjct: 719 LGVLPYPLRGDADDLPRLECAGAESPKELAERLERFRLDAGDHEVAEERRLAYVALTRAR 778 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 + + S + +++ G + ++ + Sbjct: 779 EALLLTAAYWGDAKAPRQASPFLTDLMDAG-------------LAEVVGRAEEPDPKASN 825 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + T + F G A + + E IG Sbjct: 826 PRAALTPTAQWPADPFARD--GAAPRRDAVTAAAVAVTAAMAELAASGTGPDEGEIGTDP 883 Query: 686 HDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL 745 HD T + + + + + +L Sbjct: 884 HD------------TGAGATGSASHDTGAGATGAAASDRPPTPGSPVGDREDWDALADRL 931 Query: 746 DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 + P S S + +L P L L + P Sbjct: 932 LAEQAARRRGDGRVALPAH-----LSASSLVRLAAQPEQFA----LHLRRPVPREPSPQA 982 Query: 806 TDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH 865 RGT FH + + + ++ ++ + L Sbjct: 983 R-RGTAFHAWVEAWYGRAALVDVDDLPGADDDVLPDDPGQVELRAA-------------- 1027 Query: 866 SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDIT-----DYKT 920 FL ++ + V + + + G L D + D+KT Sbjct: 1028 -FLRTPWAHRA---PVAVEVDVETTV--GGYVLRSRIDAVFSDPDRPGVPGAVVVVDWKT 1081 Query: 921 GDNPKKETAQKLIDPQLSLEAAA 943 G P+ + D QL++ A Sbjct: 1082 GAPPRDPAERASRDLQLAVYRLA 1104 >gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] Length = 770 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 90/694 (12%), Positives = 199/694 (28%), Gaps = 120/694 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + + + L I + + D N Sbjct: 54 NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ + I AKN D++D + E Sbjct: 111 VDPGEQRTLMKRILKTLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + L + A + +R ++ Sbjct: 158 NQAGDMYTQIV---------------AKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V N R Sbjct: 261 NILDFEK-----DYPEAKVVMLEENYRSTKKILQAANAVINNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A +EREEA+ +A + + E K A++ Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFVASTIDNIVREQGKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 414 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G R A Q+N + + + + Sbjct: 415 RGVGPGTLEKIRT----------------------------FANQQNMSLLDASANIMLS 446 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 K A V + + L + T ++ D T L Sbjct: 447 GVKGKAAQAVWELSNLLMNLRDDLDKYSVTELVEAVLDKTGYLDALRVQNTL---ESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE T++ F + + ++ + + L +++ + ++ Sbjct: 504 IENIEEFLTVTKNFDENQDDAPEDESGIDKLSRFLNDLALIADTDDGDTETAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 L++ TR+L SR+++ + Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643 >gi|295105534|emb|CBL03078.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii SL3/3] Length = 892 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 80/717 (11%), Positives = 184/717 (25%), Gaps = 114/717 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 +V T +A EL+ + G + GD V + Sbjct: 111 NVMAITFTNKAAGELKERLRRMLGGEE---------GDEVFASTFHSACVRI-------- 153 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R E + D + + + +S + K + + + + Sbjct: 154 LRRWAEEIGYPRSFTIYDTDDAQRVMKT--VYKELSIDDKFLPIKAAINQMSRWKDQLVS 211 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + + ++L E A ++ AEH Sbjct: 212 PEQ----ALADHARDVKSTQT--ARIYAAYEKKLKEAGAFDFDDLIYQTVQLLAEHPDVR 265 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + A RL+S + V+ D + T ++ Sbjct: 266 EFYQNKYRYLLVDEYQDTSVAQFRLVSLLTGPERNICVV--GDDDQSIYRFRGATIENIL 323 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 G + + S + Sbjct: 324 NFEKLYP--------------------------GTKTIRLEQNYRSTSNILNAANCVIQH 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNL 398 NT+ + V + A+NE++EA IA + L E + A++ Sbjct: 358 NTERKGKTLWTDNGEGDKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNAQ 417 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + ++ TR GI I G + + S ++ + D + + ++ P Sbjct: 418 SAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP----- 472 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 K +D+ + + + + Q Sbjct: 473 -------------------ARKIGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVM 513 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + + L T ++ + SD +LT Sbjct: 514 PLLKFWQIYQRLQDSLATRTLDEFA-------SDVIELTGYKAMLEADAAKGHEDAADRL 566 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + L + + +A + + + + E + + ++ ++ Sbjct: 567 QNLGQLVNNVKNYCDQ-HGEEATLEGY---LEDIALISDIDSYNESNDQVVLMTIHSAKG 622 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697 L F + L G+ EGV+P +K + + + + L Sbjct: 623 LEFPYVFLIGMEEGVFPSEMSKY--------------SEADLEEERRLAYVGITRAKKEL 668 Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + S+ SR+L+ + + + ++ W + T Sbjct: 669 YISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRMGGWGSEYSDTVP 725 >gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1210 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 94/834 (11%), Positives = 222/834 (26%), Gaps = 96/834 (11%) Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMS 247 K + + + A ++ E+ + +++ + RL++ Sbjct: 369 KAYLDAKKQEGAFEFSDIAHFAIQILEENPDIRQTYQDQYHEVMVDEYQDNNHMQERLLT 428 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHP-QYSLAKLLDFLDIK 306 ++ NG D + + N + T+P Q L L + + Sbjct: 429 LLS---NGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDY--QTYPEQGKLILLKENFRSQ 483 Query: 307 REDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI------QKCFSDVA 360 E ++ V + S+ + + + Sbjct: 484 TEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLD 543 Query: 361 LIEADNER-EEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTRFGINIDIS 416 + +AD E +A + +E + L+ + R + ++GI + Sbjct: 544 IEDADGISPSEVTIVAKEIIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVAD 603 Query: 417 AGI-PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK---NALE 472 G ++ ++ L I + A+ L++ P+ F E + + Sbjct: 604 GGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEA 663 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + + ++ + K + + +S L+ I Sbjct: 664 DCLYDKLERACLGTGTHPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRF 723 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQN----VCLDEHRKLPNLWFEEEGKT----- 583 + + ++ Q+ + L + + Sbjct: 724 YFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVAS 783 Query: 584 ---------------LSSLFSKIIETGSCIKANAIEWIDIITRL-------IDGETVKPK 621 L + ++ I I++R + + Sbjct: 784 SKQAVNLMTIHKSKGLEFKYVFLLNCDKRFAMTDIHAPFILSRQQGIGIKYLADVKDVLE 843 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVW-----------------PKNTAKNPFL 664 + ++ + LN L L L+E + + K+ Sbjct: 844 EKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEF 903 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANG----TRHLIYTRSLRENNIPTIASRWLQRLL 720 + +S +L A + + D+ +A L + E + + + + Sbjct: 904 TDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQ 963 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 L D + ++ L+ ++ P P + L + Sbjct: 964 QLLQPDDLKDNRQSADITRAI-DMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDS 1022 Query: 781 DPYAVYAR--RILKLDFIPHFKKD--PDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 D V + R L +P F K + + G+ H ++ + + + I ++ Sbjct: 1023 DGVEVMEKSYRTLNAFTLPEFSKQVKVEASQVGSALHRLMQAIPLTKP-ISLATIAQALE 1081 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM----AIE 892 +I K L + + F Q+ ++ P + + Sbjct: 1082 EIEAEAVVKAALDLQKVEQFFTE-TALGKRF-------QTYSTNLYREAPFAILKKDPLS 1133 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 + G D LL +++ DYKT + QL L A AL Sbjct: 1134 QEDYVIRGIIDA-FLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQ 1186 >gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] Length = 738 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 88/747 (11%), Positives = 200/747 (26%), Gaps = 127/747 (17%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 MH + P T S + + + +P + T +A +E+ Sbjct: 23 MHTEGPLSVTAGAGSGKTKVLTC------RIARLLEIGTDPY---RILAITFTNKAAKEM 73 Query: 61 RSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILI 118 R + G + L + + ++ + ++ L+ Sbjct: 74 RERVQNLVGVAAERIWL---STFHSFCAKLLRFEIDGFLGYTKNFTIYDSSDQVT-LMKS 129 Query: 119 WRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG 178 +L K P + L S NA+ A A D T + Sbjct: 130 CLKELNLDDKQFPPRTVLGTVSSAKNALLRADEFAKSADDFYTLKVS------------- 176 Query: 179 MWWLLAADFLKIASKYWTERLVELNASSP-----VGYQIALMRAEAEHLMKGTKGPIIIA 233 A + ++L + NA + ++ R + + I++ Sbjct: 177 -----------EAYTLYEKKLKDNNAVDFDDLLLLAVKLLQERQDIREKYQERFRYILVD 225 Query: 234 GSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ 293 + A L +A V+ D W ++ +P Sbjct: 226 EYQDTNKAQYLLTQILAAKWRNICVV--GDADQSIYAWRGADIQNIMDF-----MRDYPD 278 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQ 353 + KL + ++ V + R + + +K Sbjct: 279 GTNVKLEQNYRSTKTVLQAANAVIDNNEARLKK-----------ALWTENPQGHK----- 322 Query: 354 KCFSDVALIEADNEREEAISIAIAL--RMSLD-ENKKKSALITADRNLARRVKLELTRFG 410 + A E +EA IA + R S++ E A++ + +R ++ +L R+G Sbjct: 323 -----IVHYHAQTEHDEADYIAGVIYNRHSIENEPYGHMAILFRTNSQSRVLEEKLMRYG 377 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 I + G + + L ++ D +++ ++ P G Sbjct: 378 IPYTMVGGTKFYDRKEIKDVIAYLRVLYNPEDSLSLVRILNVPKRSIGATSIEHLT---- 433 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + + + + ED + + + Sbjct: 434 ---------------------------DYAEENGISLFDALSTTEDLPVTKRVKTALEDF 466 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + + + T I K T E G+ +++ Sbjct: 467 AALIFSLLGEVSKTDVPTLIERVVKETGYGDMLDKEAAQDPQGESRKENVGQLINAAQEY 526 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + + D + + V S + ++ ++ L F + L GL+ Sbjct: 527 MRDNPDG------NLQDFLENVALVSDVDEFEGSDSKVTLMTLHAAKGLEFPVVFLAGLD 580 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPT 710 EG++P + L + + + + +Y + + Sbjct: 581 EGLFPHSRT--------------LMDSAQIEEERRLAYVGITRAEQYLYVTNASTRTMYG 626 Query: 711 IASRWLQ-RLLVLGGTDFFDNLKKRGQ 736 S +L R L + + ++R + Sbjct: 627 RVSAYLPSRFLNEIPEELMEEYRRRAE 653 >gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1142 Score = 96.9 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 89/916 (9%), Positives = 228/916 (24%), Gaps = 110/916 (12%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TLV + + ++ + + +A EL + + I + + Sbjct: 228 RTLVRRIEGLLADGVDPTTILVLTFSNKAANELCERIAASNPVAAAAM-WIGTFHAFGLD 286 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 L P RL++ I + ++ P + Y Sbjct: 287 IVRRFHDRLALLPDP-----RLIDRTEAIELLEDEFPRLDLKHYRNLWDPALDLSDMLSA 341 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 +++ +++D ++ + + + L Sbjct: 342 ISRAKDEVVDAAGYRALAQSMAVRAGTDQDAKVRAQKCLEVATLFEAYERLLTVHQLLDF 401 Query: 208 VGYQIALMR-----AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 +R AE ++ +++ A+ RL+ + +G + Sbjct: 402 GDLVALPVRLVEGSAEVRDALRARHEHVLVDEYQDVNRASVRLLKAIVG--DGRNLWVVG 459 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D + + + + + + Q L + +R+ +V E + Sbjct: 460 DARQSIYRFRGASATNIARFAIDFPGAQAAQ---------LGVNYRSDERIVDVFTE-FA 509 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 R M S LP + R T+ ++ +++ + A A I Sbjct: 510 RGMRASSGALPLKLTADRGTEGDRVELRVADSADDEISALAASITALHAQGI-------- 561 Query: 383 DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLND 442 A++ A + L GI L L +LL+ Sbjct: 562 --RYGGQAVLCASNARLNAIAEGLEARGIPALHLG--SLFERPEIKNLLALLSLATDP-- 615 Query: 443 FMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN 502 + A + ++ + D+ ++ A + Sbjct: 616 -------------------------RAAAMVRVATTARHQMPLQDVMRVIEHLRAANPAS 650 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 L D + ++ L T +++ ++ + L Sbjct: 651 LAWS--------AMHAEVDGLADDTREALSRLSTLFAGVSASTNPWTLLAGWTIDGLGLA 702 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE--TVKP 620 + + L+ + G + ++ D + Sbjct: 703 KTLYQADDAQSRMQGLAIWQFLNFCRRQPRGQGVPVLRLLDRIRRLVLLSEDRGLSQLPR 762 Query: 621 KIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNPFLSRVMQSDLN 673 E + ++ S+ L FD + L G+ N + + Sbjct: 763 SAESIDAVRLMTIHGSKGLEFDAVHLPGMVTSGLPRNNVPPRCLPPDGLIHGSEGLTGIE 822 Query: 674 LKTAEKYIGQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNL 731 A + F + R + + + + + SR++ + F L Sbjct: 823 AVKAGHDEEEECLFFVALSRARDRLLLYSYAKQADGRARSPSRFVAPIERFLARPAFVPL 882 Query: 732 KKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRIL 791 + P ++ ++ P +L Sbjct: 883 RAG------------------PPSTGVPLSITWQGRPQWTDIQVNLFERCPRRFLYTHVL 924 Query: 792 KLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 +L + + +++ L ++ + + + + + Sbjct: 925 RLGGRRT---ETAFMKMHNVVNDVFEWLKREHETTSP--TVDELAARFEEAWRSKG---A 976 Query: 852 IDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG 911 + + + +I ++ + +S P + I ++ D + G Sbjct: 977 AEHGYAEDYRRIGRRLVDFLIESRSRG-VSAPASPISLGWAEGEILVS--PDGVARGDGG 1033 Query: 912 FVDITDYKTGDNPKKE 927 V + KTG Sbjct: 1034 RVTVRRVKTGKQRSNA 1049 >gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207] gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207] Length = 723 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 74/709 (10%), Positives = 184/709 (25%), Gaps = 126/709 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNP-- 101 S+ T +A +E+R E+ G + + + + A L Sbjct: 56 SILAVTFTNKAAREMRERIDELMGMSLRGMW---VGTFHGLAHRLLKAHWKD-VKLPENF 111 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + L L + ++ + + ++ Sbjct: 112 QILDSDDQLRLVKRVMRSMDLDEQRWPPKQAQWWINGQKD-------------------- 151 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 E + + + + + + E L + + EH Sbjct: 152 EGLRAAHIQETGDPHMAT--------MLRIYREYEEVCNRLGVIDFAELLLRALELWKEH 203 Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + I++ + + +A +G V D W Sbjct: 204 PAVLDHYQQRFQHILVDEFQDTNAVQYAWLRILAGKVSG--VTAVGDDDQSIYGWRGAKV 261 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 ++ + + + ++ S + Sbjct: 262 ENILHYEGHFSD--------------------------THTVKLEQNYRSTSNILNAANA 295 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN--KKKSALITA 394 +N + L + +AL A NE +EA IA L+ +++ ++ SA++ Sbjct: 296 VISKNAERLGKSLWTDSGEGEPIALYAAFNEHDEARYIADRLQSWVNQGNLREDSAILYR 355 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I I G L S L + +D +A +V P Sbjct: 356 SNAQSRVLEAALLQADIPYRIYGGQRFYERLEIKNALSYLRLMMNCHDDVAFERVVNVPP 415 Query: 455 AKFGFPEKY-LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G + ++ R ++ + R+ Sbjct: 416 RGIGDRTVETIRALAREEQISMWRASEKIVT------------------------EKRMP 451 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + ++ I + L D +L + ++ Sbjct: 452 GRAINAVAVFLELINEMSGQL-----------------DELELYEQAENAIQRSGLIEMH 494 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKA---NAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 E G+ +++ +A + + ++ + E + + Sbjct: 495 KREKGERGQARVENLEELVGACRNFEAEDKDLPILPQFLDQVALDSGDRQADEDQDAVQL 554 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + ++ L F + + G+ E ++P + + + L + + + F Sbjct: 555 MTLHSAKGLEFPLVFIAGVEENLFPHKMSLDEPGRLEEERRLAYVGITRAMQKLYLTFAE 614 Query: 691 ANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTD-FFDNLKKRGQCY 738 +RS+ SR+++ + + N R Y Sbjct: 615 ---------SRSIYGTESFNSVSRFVRDIPKEVIEEVRLQNTISRPTSY 654 >gi|68249529|ref|YP_248641.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 86-028NP] gi|68057728|gb|AAX87981.1| exodeoxyribonuclease V gamma chain [Haemophilus influenzae 86-028NP] Length = 1121 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 92/757 (12%), Positives = 191/757 (25%), Gaps = 97/757 (12%) Query: 39 LNPLL-LASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVVEEKFTADLL 94 L P I V + Q L+ E + TG + + +P + + A L Sbjct: 24 LPPEDPFQQDIILVQSPNMAQWLQIELAKETGISANLKFPMP-----ASFIWQ-LYAQNL 77 Query: 95 LSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLAD 154 + L P + L RLI + K + L S L+ +AD Sbjct: 78 PATALENPFDKDSMMWRLIRLIPTFLEK--ENFLPLRNYLASSPHSEQYKLYQLSSKIAD 135 Query: 155 IIDIIETEEKKW-------------EDLHALKNEKYGMWWLLAADFLKIASKYWTE---- 197 + D +W + + + +K + W Sbjct: 136 LFDQYLVYRAEWIFAWEKGEDEQITAQIRKQQPNLNDTLFEQIQGNIKWQGELWRALVVD 195 Query: 198 -RLVELNASSPVGYQIALMRAEAE-HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A+ + A+ K I I G A ++ +++ + Sbjct: 196 VKSDVDDATHRAALHNQFLALLADKKAPKKLPSRIFIFGIPALPTAYLNILQAISSEVDI 255 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT--TYSTHP--------------------- 292 + I + + + P Sbjct: 256 HLFFNNPCQEYWGDISDLRLDYLRSRQRYQFNKQNENQPLFSEEQLSQLENAQFDVTYQN 315 Query: 293 ---QYSLAKLLDFLDIKREDVKRLGNVSNEMY--GRSMVISKSFLPPDTSDMRNTDILEN 347 Q L + + R+ + L + + LEN Sbjct: 316 ENLQVGNPLLAAWGKMGRDFLYTLVRDEEHIPTYPVNAYQEIKSNSLLGQLQSQILHLEN 375 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 K NI K + L + E + L +++ K ++ AD N Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLDLFNQDPNLTPKDVVVMVADINQYTPYI 435 Query: 404 LEL------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 + I +S + + S +LL + L+ P + Sbjct: 436 QAVFGQKNRNAPQIPFSLSDNKLSESDVLVSSYLTLLRLKESNFSAEDVLALLDIPATRE 495 Query: 458 GFP----------EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 F E G + L+ ++L ++ Sbjct: 496 RFNISLADLPLVREWVADSGIRFGLQKNQDGINFNSWQAGLERMILGYAMREEQGIWQDS 555 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 S K + + ++ L + SI W ++ L + + Sbjct: 556 LGLNSSYGLKGELAGNLSYFFTALSLLHETLQQAH------SIEKWQEILTALLSDFFVQ 609 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID---GETVKPKIEK 624 +++ + +++ E + D+I +I + Sbjct: 610 NEDTSDTIFYIQ------EKINELAEHLKMLHFTEKLQADVIADVITMKLEDAPNSLKFL 663 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 + + L R + F + L G+N+ +P+ N F + Sbjct: 664 AGKVNFCTLLPMRSVPFKVVCLLGMNDADYPRTQTPNSFDLMQYHYQKGDRVRRDDDRYL 723 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRL 719 + + + R +N P S + +L Sbjct: 724 -FLEALLAARNYCYISYIGRSITDNQPKEPSVLVSQL 759 >gi|254454814|ref|ZP_05068251.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238] gi|198269220|gb|EDY93490.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238] Length = 886 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 85/782 (10%), Positives = 199/782 (25%), Gaps = 46/782 (5%) Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 RL +A + P + ++ + + P + L L Sbjct: 87 RLYKHLAALCDLWRQAPAALPEDLQVYAHVLSCAAEDALEPLPLVVGDPCTFASPLEGRL 146 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI----PNIQKCFSDV 359 + D L + + + + + + + Sbjct: 147 HAQLLDHHGLASEEFRGEWAARCAPLLIGAAEGTSLWRAQQGLTGAFIPSGPLDDTMAFF 206 Query: 360 ALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGI 419 AL + E + A + A + + L+ + +++ GI + Sbjct: 207 ALRDEAEEADFAAARAQRMIDQNVSPEDIGLLVPNEVGYFAQLRRAFANVGIPLSGLPTQ 266 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 P + L LL MA+A+L PL + Sbjct: 267 PSRRDIAGETLLQLLLCFQAPAPAMALASLYISPLLPWPAETGLQLS------------R 314 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + + Q+ V + + + Sbjct: 315 EVMKGRFEPFAARSLTGRPQRFYKLVRSNIEQSPLGVLQALEQAAQLLTDVTELREDVAA 374 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 ++ + ++ P+ S F + + + Sbjct: 375 FRSKLGTMRAQLAQSRSLDWAALYRVATPTTPKPSP---------SEAFVEGVSVFTEAT 425 Query: 600 ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTA 659 +I + G + S + E Sbjct: 426 MPWRPARHLIAMGMSGNRWPRAVSASPLFLDGELQLLHEKTGLRV------ETRGDALAR 479 Query: 660 KNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRL 719 + L R + T + + + L+ + A + L Sbjct: 480 RLEKLRRQLLCASGSVTLLRPVFAPNGSRQAPAAALSLVARTVGNGDKGTEGAEVLIHDL 539 Query: 720 LVLGGTDFFDNLKKRGQCYLDWTRKL-DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L + + T + D + + + + + R S S ++ L Sbjct: 540 RALPRDRWPFEHRVVVASMDALTSAVPDDGVLRLGHDLLRRRLLDDGRMRPQSPSRLETL 599 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITE-LIKKRINKNTPEINHLMKQ 837 + P A + + + + GT+ H+++ K + +I + + Sbjct: 600 MVSPLAWSLS-VFGAEPVTWAPDGLNVMVAGTIAHDVLEFLFPKDVALPDHDQIEAEVPE 658 Query: 838 IIDSHFEKENLP--PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 ++ S K I + R + + + ++ ++ + E++G Sbjct: 659 LLASAIRKYAPFLQRSIWAVEREGLLRDIRTAAHAWRNTLAGLDARVIDNEIGLQGEALG 718 Query: 896 IHLTGFADRIDLLKSGFVDITDY-KTGDNPKKETAQKLIDPQLSLEAAALKA-------- 946 I L G AD + L G + + D+ K+G ++ + D QL L LK Sbjct: 719 ILLRGRADCLLQLADGSLLVVDHKKSGTPKRRARLEAGWDLQLGLYREMLKRPEKTGEVL 778 Query: 947 -GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGE 1005 + + VA + E+S +++ LI+ + ++ G Sbjct: 779 EAALAGNPKIGVAYHLINDQGVLLEGLEPPAGVVTVVDGEISAQAMDLLIKRLAEVEAGM 838 Query: 1006 QP 1007 Sbjct: 839 IG 840 >gi|323138753|ref|ZP_08073818.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC 49242] gi|322396000|gb|EFX98536.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC 49242] Length = 884 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 81/745 (10%), Positives = 186/745 (24%), Gaps = 93/745 (12%) Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + + I + S D + ++ + A EA+ Sbjct: 166 PLLQALTAHIPVQWTAGPRSIPAWLDGTGVTVARAPAQTPRISAVSAATAYHEAVEAMRW 225 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434 R L S + A + A L I++ G+ TT +L Sbjct: 226 ARSLLATGVSPSEIAIATASPADYDDHFLALRADANIDLHFVHGVRTVTTREGQAAAALA 285 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + + + L R + + + VL Sbjct: 286 DIVVRGLSQSRLRRLAA-----------------------LCRDSGPFETLPEGWLRVLP 322 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 A +RL ED V + + L Sbjct: 323 TDAPLSTLGTWNRLLARLMAEDWPDGADHVSALRTAVATLAKGPDAAGEIGEAFLKGRAL 382 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L +++G + + S + A+ ++ ++ Sbjct: 383 AIWRKALLAGPAASLDATLETLKQDDGLEACVCVAWMP--ASALAASPRRFVRLLG---L 437 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + P+ L + + +L+ + L + T + + + D + Sbjct: 438 NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFETILATTADTVVLSRARRDSDG 497 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + + A R+ + + R + R + Sbjct: 498 RLLGRSPLLAGMG-------GETYLRRNATPRHACSETDRLMARPQEFAADPQAVGAQGC 550 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + + T R L RT S S +++L+ +P + Sbjct: 551 WRDWRKA-----EITPHDGLVRADHPLVLAILSRTQSASSLRRLLRNPLSFVWVYAFGWR 605 Query: 795 FIPHFKKDP--DRTDRGTLFHNIITELIKKRINKN---TPEINHLMKQIIDSHFEKENLP 849 + D G L H ++ +++ + ++ + + + Sbjct: 606 EPQSSAEPLVLDALGIGDLVHMVLDRALRELETGGGLVSADMEAIEAAVAQAAQAVAADW 665 Query: 850 PHIDIIWRHLF-------HKISHSFLEHEEKIQSSIEKIFVNIPAK-------------- 888 + + ++ + + +P Sbjct: 666 ESERPVPPAVIWGRTLDDARVMAGRALSYGDDLLPGARSYGEVPFGGSEPKSDAETPWDA 725 Query: 889 ---MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAAA 943 + I G ++ G+ DR+D+ G + DYKTG P+ + + Q L A A Sbjct: 726 STPVTIPDTGFNIAGYIDRLDISGDGKRALVRDYKTGRPPRGDVRLNGGRELQRCLYAFA 785 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 +KA + + D + + + + +T Sbjct: 786 VKALLGDDVA-----------ISASLLYPREPVDLQLDDPEAVLSE--------ITGYLR 826 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028 + ++ + +YD LA Sbjct: 827 AARASLAGGAALPGPDTGGDYDDLA 851 >gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas palustris CGA009] gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A) [Rhodopseudomonas palustris CGA009] Length = 1133 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 79/789 (10%), Positives = 183/789 (23%), Gaps = 69/789 (8%) Query: 192 SKYWTERLVELNASSPVGYQIALMRAE--AEHLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + +L+ + L+R + +++ + P + + Sbjct: 349 FRDYKRSAAQLDFDDLIFAARDLLRDHDDVRRSLATRFAHVLVDEFQDTDPLQTEIFWRL 408 Query: 250 ANHPNGAI--------------VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS 295 P + + D + + P+ Sbjct: 409 CGEPPAGVASADWSAFTIRPGALFLVGDPKQAIYRFRGADVSAYVRARDAYLAQD-PESV 467 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 LA +F + + P + + + Sbjct: 468 LAISTNFRSCAPILTYVNDRFEALLSSEGQPGFTALDPFHADRGEALCVAALDVAVADEN 527 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE--------------NKKKSALITADRNLARR 401 A EA +IA + AL+ + R Sbjct: 528 GKASA---EQQRDGEADAIAQMCARLIGGEMILDRRSGASRPCRPGDIALLAPTGSDLWR 584 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 + L R GI + AG L L +L + D +A+ L++ PL E Sbjct: 585 YEEALERHGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEE 644 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 ++L+ + +A T ++ S +L Sbjct: 645 LLDIIWALPRAEDDPERLPRLDLGVELEH-IAHPLARSTIETLQALYRQTNSTTPHDLLS 703 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 +D + L ++ N+ + LT + + W +E Sbjct: 704 QAIDALRVRPILLERHRGQAERALANVDLY--LSLTTSFAVRGLRAFAETMTAAWTDEA- 760 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + E + +A + ++ ++ + Sbjct: 761 RAVEGRPDAQEEAVALYTMHAAKGLEWP-------------------IVVPINTMTGIMA 801 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + + + + D + AE + + A R L+ Sbjct: 802 PESAVTDRDSDTFYCPVFGVKPVGYDAARDA--EKAELDRERIRLWYVAATRARELLVL- 858 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + A L L + + D T Sbjct: 859 PRLDAAQSKSAWISLLDLSLAELPALDLSHLPPELDLAAGGEANDQTRD-DFAAEAASIV 917 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP------DRTDRGTLFHNI 815 + + + S + A I + +RG + H + Sbjct: 918 ARQRRLIWLAPSRDESADGPVLTPEAAEIWAASEAGQPDDEAVRPNVQGGRERGLILHKL 977 Query: 816 ITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + E++ + ++ + +I P + L + + E Sbjct: 978 LEEVLTGETPDDAGALSERARALIGEIGRPVMADPSQGLSPDELAGCVVRTLALPEIAEL 1037 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTGDNPKKETAQKLID 934 + + A + ++ + G AD +G + D+K+ P Sbjct: 1038 RPTLVPELAVYAAVDVDGVEQATVGIADATSFDIAGKPTVVIDWKSDVQPT-AETLNHYR 1096 Query: 935 PQLSLEAAA 943 Q+ Sbjct: 1097 AQVRAYLDM 1105 >gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] Length = 1165 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 80/799 (10%), Positives = 182/799 (22%), Gaps = 119/799 (14%) Query: 200 VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--AI 257 EL + + ++ +++ + + L+ + H +G Sbjct: 402 AELGLLARAALRNTSAVSDLAQATGQNLQHLLVDEMQDTSTSQYELIQLLTQHWDGSSQT 461 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQ--------YSLAKLLDFLDIKRED 309 V D ++ + T + T P + L + Sbjct: 462 VFLVGDPKQSIYLFRQARVERFVNTMHSRTLGDVPLGVLNLTANFRSQSTLVENFNQDFG 521 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + S S + P R + + + Sbjct: 522 LLFPTLASGNPSEVSYTPAIPRRPATQHAAREWHPTPIPYTDDTNTRTTQTTRQRRQTAT 581 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 E +A A + D + + L+ +L V + PL Sbjct: 582 EIRDLAAAWL-ARDHTARLAVLVRNRSHLIEVVAAFKQSPAVPFRAIQIEPLRERQEILD 640 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L +L A+ D A L++ P + +L + Sbjct: 641 LLTLTRALLHPADRTAWLALLRTPWCGLTLTDLHLLTGADD------------------- 681 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 ++ + LL D + + P+ + + G L Sbjct: 682 ---------------PTLARTSIIHLIATRGDLLSDDGIARLEPVWQILSAALAQRGRLP 726 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 IS W + T + + + + +++ + Sbjct: 727 ISQWIERTWRSFNAPA-------------FSTQEELANIDQYLTLLDQLESPGNTLDLTL 773 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + + ++ ++ L +D + + L + +L Sbjct: 774 LDQRLSKLYAAPAVHPGAVDLMTMHGAKGLEWDAVFVPALERTGANNRSRLLSWLEVDGT 833 Query: 670 SDLN----------------------------LKTAEKYIGQAAHDFEMANGTRHLIYTR 701 DL+ +++A + + + R ++ Sbjct: 834 PDLDDDTIAHGILAPIQSKGTASQQLNTWMRSIESAREAAERKRLFYVACTRAREELHLF 893 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFP 761 + S LL D+ + + P+ Sbjct: 894 ASPVAKQDGTLSIPPASLLASAWPAAEDHFHPPAAQLIVMPTQPQILDSLAAAAAPRTIL 953 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 + P + + + G H + +L Sbjct: 954 RIPLSPIELIPTPEPTQPQTLF-------------DRPEGSFASRAFGNTVHAFLDQLAA 1000 Query: 822 KRINKNTPEINHLMK-----QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQS 876 + +TP +I P ID + + ++ + + + Sbjct: 1001 RIAAGDTPAQLTTELPQWSPRIAQLLRASGLPPTTIDRFAPRVLTALYNTLTDPDGQWLL 1060 Query: 877 SIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSG-------FVDITDYKT----GDNPK 925 + A ++ + + DR L I DYKT G Sbjct: 1061 AAHPNATTESALVSWDETRTSI--RMDRTFLAGDSPQTTASTHQWIIDYKTADLGGRTES 1118 Query: 926 K--ETAQKLIDPQLSLEAA 942 ++ PQL AA Sbjct: 1119 TFLAEEKQNYAPQLEAYAA 1137 >gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957] gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957] Length = 791 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 68/727 (9%), Positives = 178/727 (24%), Gaps = 84/727 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + V T +A +E+ + + ++ I + + A + Sbjct: 53 SGVLAVTFTNKAAKEMTARLSAMLPINTRAMW---IGTFHGLCNRLLRAHYRDAG----- 104 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + ++L+ + + L + D P ++ I+ + + Sbjct: 105 LPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQY--------------FINGAKEQ 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218 + DL + + + + Sbjct: 151 GLRAGDLEIANEFDRR---------MADLYAAYDAQCQREGVVDFAELLLRCYELLRYND 201 Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNT 273 + I++ + + +A + + D + Sbjct: 202 AIRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVAPNAIFAVGDDDQSIYAFRG 261 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + L+ + + +N + + Sbjct: 262 ANVGNMVDFEREFRVE---------HRIKLEQNYRSHGNILDTANHLIAHN--------- 303 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSAL 391 T L + V + ++ + +EA I +R + + + A+ Sbjct: 304 --------TRRLGKNLRTDAGLGEPVRVYQSATDGQEAGWIVDEIRERIASGTARSEIAI 355 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L GI + G+ + L + +++ A +V Sbjct: 356 LYRSNAQSRVIEHSLFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENVDNDAAFGRVVN 415 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P G L + L +L + L ++ Sbjct: 416 FPARGVGARSLELLQDAARLYGASLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLP 475 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + A L+ H L + + + + + Sbjct: 476 EIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGADAIATALPVR 532 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + E G+T + ++++ + ++ + L G+ + ++ Sbjct: 533 HDAMLRIEGGETDGDVVAELVAGEAPMEMTPLVAFLTHASLEAGD--NQAQAGQDAVQLM 590 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + + GL EG++P + + L + + F Sbjct: 591 TVHAAKGLEFHVVFITGLEEGLFPHENSLQDTDGLEEERRLMYVAITRARERLYLSFAQ- 649 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQ 751 +R L I SR+ L + D + Sbjct: 650 --------SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGAQGDNAWGR 701 Query: 752 PHYKRPK 758 +KRP+ Sbjct: 702 DWFKRPE 708 >gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] Length = 1186 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 89/861 (10%), Positives = 207/861 (24%), Gaps = 100/861 (11%) Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE- 218 E L L + +K + + E + +R Sbjct: 326 AEYRVDVERLRPLAESLF--------GVVKELDSRFYAKKAEKGILDFGDLERLALRLLR 377 Query: 219 --------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 A + + +++ PA + V+ + D Sbjct: 378 GKDGSPTPAAYAVAAQFEEVLVDEYQDVNPAQDAIFRAVSREEQN--LFMVGDVKQSIYR 435 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + T + + Y + L + N ++G+ M Sbjct: 436 FRKATPELFIEKKETFSPYDGHTYPARIV---LGRNFRSRAGVAEAVNFVFGQLMSRELG 492 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD------NEREEAISIAIALRMSLDE 384 + + + P + F+ + A N EA +A + L E Sbjct: 493 GIDYGEEERMTPAAVYFDRPGNEADFALHLVETAAYDENDDNAMLEARYVARTVARMLRE 552 Query: 385 NK--------------KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSIL 430 L+ LA+ L G+ + +++ Sbjct: 553 GYTVQGAGGPRSVVCKDFCILLRGANRLAQTYVDALKEEGLPAYADIAGGYLGSYEVAVM 612 Query: 431 TSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKS 490 +LL + + + +++ P+ F + R ++ + L + + Sbjct: 613 LALLRVLDNPLQDIPLLSVMLSPVFGFSPDDLAGLRLEHPKGHLYLAVLARAKAEGGHFA 672 Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 ++ + + V + + A L + + + Sbjct: 673 AFVEMLDDLRRLAAVLPSDRLILRVYESTAFLDICTAMPGGAGRRANLRLLLDYARSYEA 732 Query: 551 SDW--TKLTVTCLQNVCLDEHRKLPNLWFEEEGKT--------------------LSSLF 588 + + V + V D + E+ L F Sbjct: 733 AGFRGLAGFVRFVDRVAEDADLPPASTVSEDADVVRVMSIHKSKGLEFPVCIVAGLGRRF 792 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 ++ + + + + + I S L + Sbjct: 793 NREDSRRGTLFHPEYGFGSYLRD--PALSCHVTTLPREVVRIETERGSMAEEMRVLYVAM 850 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 A P + + S L + + N L+ + Sbjct: 851 TRAKEKLICVAAVPTAEKAVASAAALLRPDGAGIVPFAAMQAPNFMAWLLACVLRHPSCG 910 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQ----CYLDWTRKLDYTTKQPHYKRPKPFPPLE 764 A L+ L +L + + + + D ++ + + Sbjct: 911 CLRALAGLEELSILSTAHSMEPVIAQAEGACKTAPDVEQETPQPVDEELLAEIRRRIAFV 970 Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + K +++ R + + +GT H + L Sbjct: 971 YPHEPLTRLPSKLAVSEIAEERLHRDFGVRRPSFVQAGLSAAQKGTALHTFMQ-LADLAN 1029 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN 884 +T ++ ++++ S LP + + L E+I+ Sbjct: 1030 LHSTEDVAAEARRLVKSA---HLLPEEGKAVDAAQVLAFLETPL---FARLRRAERIWKE 1083 Query: 885 IPAKMAIESIG---------------------IHLTGFADRIDLLKSGFVDITDYKTGDN 923 + + + I L G AD + ++ G I DYKT Sbjct: 1084 LRFNLTVSPDELSGMGMDVPAPTNTALDVRAQIVLQGMAD-VVWVEDGRYFILDYKTDHA 1142 Query: 924 PKKETAQKLIDPQLSLEAAAL 944 + + QL+L A A+ Sbjct: 1143 -GADELRARYAGQLALYARAV 1162 >gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 783 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 88/694 (12%), Positives = 201/694 (28%), Gaps = 120/694 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + + + L I + + D N Sbjct: 67 NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 123 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ + I AKN D++D I E Sbjct: 124 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 170 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + L + A + +R ++ Sbjct: 171 NQAGDMYTQIV---------------AKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNP 215 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 216 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 273 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V N R Sbjct: 274 NILDFEK-----DYPEAKVVMLEENYRSTKKILQAANAVINNNRNRRPK----------- 317 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A +EREEA+ +A + + E K A++ Sbjct: 318 ----------KLWTQNTDGEQIVYYRARDEREEAVFVASTIDNIVREQGKNFKDFAVLYR 367 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 368 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 427 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G I D +L + N + + + ++ Sbjct: 428 RGV--------------------GPGTLEKIRDFANLQNMSLLDASANIMLSGVKGKAAQ 467 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 +LA L L+ +T+ + + T + Sbjct: 468 AVWDLANL-----------LMNLRTDLDKYSVTELVETVLDKTGYLDALRVQNTLESQAR 516 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + +E T++ F + + ++ + + L +++ + ++ Sbjct: 517 IENIKEFLTVTKNFDENQDDAPEDESGIDKLSRFLNDLALIADTDDGNAETAEVTLMTLH 576 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 577 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 622 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 L++ TR+L SR+++ + Sbjct: 623 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 656 >gi|327395042|dbj|BAK12464.1| exodeoxyribonuclease V gamma chain RecC [Pantoea ananatis AJ13355] Length = 1125 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 114/974 (11%), Positives = 239/974 (24%), Gaps = 126/974 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL + DPL+ AS + V + Q L+ E G + I L Sbjct: 11 DLLKSLAARVIKLDPLD-DPFASEMVLVQSPGMAQWLQMELAHTFGIAANIE---FPLPA 66 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + +L + S +L + L + LS Sbjct: 67 SFIWEMFVRVLPDIPVESAFSKASMSWKLMHRLPS----LLLQDEFASLRHYLSDDGDKR 122 Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 L+ +AD+ D W E + W A +TE L Sbjct: 123 KLFQLSARVADLFDQYLVYRADWLNSWERGQHIDGLGDAQIWQAALW---RDLVNYTEEL 179 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + + + + I G + P + + + H + + Sbjct: 180 GQPKW-HRANLYARFIHTLEQTQTPPANLPERVFICGISALPPVYLQALQALGRHIDIYL 238 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------------------HPQYSLAK 298 + I + Q Sbjct: 239 LFTNPCRDYWGDIQDYAFLAKLQSRQRRRHDREEYRGLFSDVARAPALFSDEGEQQLTNP 298 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--------- 349 LL D L + + + S + L++K Sbjct: 299 LLASWGKLGRDNLYLLSQMDLNSEIDAFVDVEEDNLLHSMQHDLLNLQDKAVIGLTADEL 358 Query: 350 ------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399 + +A+ + + E + L ++ + + ++ AD + Sbjct: 359 AYSGQKRCLDPADRSIAIQVCHSAQREVEVLQDHLLARMEADPGLKARDIIVMVADIDAY 418 Query: 400 RRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + + IS LL + L+ P Sbjct: 419 APFIQAVFANAPAERYLPFAISDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPA 478 Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKN 501 F E L + + +R + + L L + Sbjct: 479 LANHFSIDESGLRLLRRWVSESGVRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYAME 538 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + H +E L L H+ + ++ L ++ + W L L Sbjct: 539 SQHGDWQGILPYDESSGLVAELAGHLAELLSRLNHWR---QVLSEPRPLEAWLPLCRELL 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L E + +L ++ + D + +D + + + Sbjct: 596 NAFFTADPETEAALLLVE--EQWKALIEYGMDARFDEPIPVVLLRDDLRGRLDQQRISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + R + F + L G+N+GV+P+ A F QS ++ Sbjct: 654 FLAG-QINFCTLMPMRSIPFSVVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDD 712 Query: 682 GQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG------TDFFDNLKK 733 + + + L + R ++N S + LL G D +L + Sbjct: 713 RYL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLPGDEDQDLDE 771 Query: 734 RGQCYLDWTRKLDY------------------TTKQPHYKR----PKPFPPLEAQPRTYS 771 + L + R P+P Sbjct: 772 SARRVRAHLEHLHSRMPFAPENFQPASAAHSFAREWLPAARGTGQPQPDFVQPLLTPPVE 831 Query: 772 FSEIKQLI---NDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 ++Q + P + ++ L + F + D + + N Sbjct: 832 TLALEQFLRFWRHPVRAWFQQRLGVSFWLEENELLDSEPFAL---DSLERYQINAQLLNA 888 Query: 829 PEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ H NLP ++ W+ ++ + + Sbjct: 889 LVTGEDTDRLYAHHRAAGNLPYGAFGELFWQAQREEMQEVAADVTSQRSEG-------ES 941 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G+ L+G Sbjct: 942 WEINLDLDGVSLSG 955 >gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 815 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 66/699 (9%), Positives = 159/699 (22%), Gaps = 97/699 (13%) Query: 47 VTIYVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP-- 102 + T +A +E+ + + + I + + A + L Sbjct: 64 ILAVTFTNKAAKEMMTRLSAMLPVNVRGMW---IGTFHGLCNRFLRAHFK-NAGLPQAFQ 119 Query: 103 -VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + +L + RL ++ I + Sbjct: 120 ILDTQDQLSAIKRLCKQYKIDDERFPPKQMAW---------------------FIGNCKE 158 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 E + +D+ A + ++I + + ++ + ++ Sbjct: 159 EGLRPKDVVASDPD--------TRKKIEI-YQLYEDQCQREGVVDFGELMLRSFELLRDN 209 Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI------VLPGLDCHIPTAI 270 + I+I + + +A G VL D Sbjct: 210 APIREHYQRRFRHILIDEFQDTNKLQYAWIKMIAGVGQGGSDAGAGSVLAVGDDDQSIYA 269 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + + ++ S Sbjct: 270 FRGARVGNMTDFVREFAVRQQI--------------------------KLEQNYRSYSNI 303 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388 + N+ L + Q V + EA ++ EA + ++ + + + + Sbjct: 304 LDSANALISHNSRRLGKNLRTDQGAGEPVRVYEAPSDFAEAQWMVDEMKQLIRDDVPRSE 363 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 A++ +R ++ L GI + G+ + L + ND + Sbjct: 364 IAVLYRSNAQSRVIETGLFNAGIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFLR 423 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +V P G + +L ++ + Sbjct: 424 VVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDVMREQTADL 483 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + + L++H + S + + Sbjct: 484 NLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFV-MQEGFGREAPGMAPLV 542 Query: 569 HRKLPNLWFEEEGKTLSSLFSKII-ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 L + LS + + +T Sbjct: 543 SSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNMAAAGQDA 602 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + ++ S+ L FD + + G+ E F SD + E+ + A Sbjct: 603 IQLMTVHSSKGLEFDCVFITGMEE---------GLFPHENSMSDHDGLEEERRLAYVA-- 651 Query: 688 FEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVL 722 + + L + S + SR+ L Sbjct: 652 --ITRARKRLYLSHSQTRMLHGQTRYNLKSRFFDELPEE 688 >gi|291514124|emb|CBK63334.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Alistipes shahii WAL 8301] Length = 1042 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 101/786 (12%), Positives = 209/786 (26%), Gaps = 71/786 (9%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA-EHLMKGTKGPIIIAGSTGSIPA 241 A + + R ++ + Y + L+ E ++ + +++ P Sbjct: 289 RLAADWRRDYADYKRRNRLIDFNDMERYSVQLLDLEEVARDIRKSTRLVLVDEFQDCSPI 348 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 RL ++ + D + + + + + Sbjct: 349 EIRLFDRLSEI--VEESVWVGDTKQSIYGFRGSNAEMIETVTQQFSEDAAQPNAAGCFRT 406 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 L ++L +N ++ + + P + + F V Sbjct: 407 SLPKSYRSREKLVRAANAVFTPIFGPAAALEPHHGEEGVESVPPLELWQVGGDFFEGV-- 464 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A + +R L A++ + + L GI + +A + Sbjct: 465 ---------ADGVEALIR--LGVAPGDIAILARRNDQVDALAGSLRNRGIPVA-TAETAI 512 Query: 422 STTLHSSIL--TSLLNAIFKLNDFMAIATLV-KHPLAKFGFPEKYLSRAKNALELVALRG 478 L +L + AI L+ P+ + + Sbjct: 513 GDYLEVQLLVALLNYAVLHDDFSKAAILALLADCPVDELLERRLDYLADPGDSRWLEEDD 572 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 D + ++ ++ +++R++ A H+ + Y+ Sbjct: 573 LFRKIDRVIDRNRQQSISGFVESLIVELDFENRINRWSGPEAARRRAHLDSVLALAADYE 632 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 T T G CL+ + E + W LS SK +E Sbjct: 633 TQAAQTGGAS-----LGGFARCLEQGQMTERPFEKDPW---AVSVLSYHKSKGLEWKHV- 683 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 I+T L + + + + +S + LI N Sbjct: 684 ---------ILTGLERDYRKRLFAQDLFEVQLHRAADSDGGDARRLISLFPNLFGASSVP 734 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQ--AAHDFEMANGTRHLIYTR----SLRENNIPTIA 712 L ++ L+ + A++ +G+ A + R + S R + Sbjct: 735 R---CLEDQLRELLHYEAADRRVGREEARLLYVGFTRARDQLIAVQPLKSARNGTTTPQS 791 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 WL ++ + + T +P P Q + Sbjct: 792 LEWLIQVGAATNERMWHAWNEPIPIRPFVGAAASRTAVEPPTAERYLRPEPPVQTPELRY 851 Query: 773 SEIKQLINDPYAVY---ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 + QL DP + + GT HNI+ + + Sbjct: 852 LQPSQLAADPNRKPEVTLVADRGARIELRAGAETPMAEIGTTLHNIL-----ALCSPGSE 906 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + +QI+ H + +P ++ E+ KI+ P +M Sbjct: 907 NVTGRARQILGRHGMETVVPHPEQ------IGAMAEWLFGWLEREYGPARKIWHERPIRM 960 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKT--G-----DNPKKETAQKLIDPQLSLEAA 942 L G D + G V + D+K+ G NP E PQL+ Sbjct: 961 WCNGQE--LNGSIDLVWETDHGCV-VVDFKSFPGTREAVTNPSGEHFAGRYAPQLTAYRR 1017 Query: 943 ALKAGS 948 L+A Sbjct: 1018 VLEAAG 1023 >gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] Length = 1213 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244 + + R +L + ++ + +++ + A + Sbjct: 320 EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 +S + + V D + W + S + + SL L Sbjct: 380 YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363 + + + I+ + ++ +N + + + D+ + Sbjct: 432 TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484 Query: 364 AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400 A + +EA ++A L + ++ +A++ +++ Sbjct: 485 APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + EL+R GI + A ++ + LN + + + Sbjct: 545 PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 ++ LE ++ + + +S++ + Sbjct: 594 LNRFRLSREDLEAISKAAGRTGLPFQE-------------------VMKSQIGASVSQPG 634 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + + + I L + + + L E R + EE Sbjct: 635 RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 S+ +G +EW+D+ + + + ++ ++ L Sbjct: 686 FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745 Query: 641 FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682 +D + + GL+EG +P N + L ++ L K + Sbjct: 746 WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805 Query: 683 QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725 + + + + +TR+ N + + LL Sbjct: 806 EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865 Query: 726 DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 F +G DW ++ +P P + S+ ++ Sbjct: 866 LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925 Query: 777 QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 P + + P + + G+L + R + Sbjct: 926 PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985 Query: 828 TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 + + + + D ++ P + I H+++ Sbjct: 986 SSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045 Query: 870 ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904 E + + + + + G + D Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105 Query: 905 IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 + +S G I D+KT +P ++ + QL + + ++D + + Y+ Sbjct: 1106 VFQERSCGTTWIVDWKTASHPNPPEYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 LK+ + + ++ + + + L +++ + F+S L Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213 >gi|213965852|ref|ZP_03394043.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46] gi|213951430|gb|EEB62821.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46] Length = 1164 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 80/711 (11%), Positives = 194/711 (27%), Gaps = 92/711 (12%) Query: 46 SVTIYVPTKRAIQEL-------RSEFIEITGKKSTILPII------KSLGDVVEEKFTAD 92 V T++A +EL + ++ P + + + + + ++ Sbjct: 69 EVLGLTFTRKAARELGVRIRQQLNALASSAAFRAQASPEVLASLEVIAPTTLTYDAYASE 128 Query: 93 LLLSYNLNPPVSNIQRLLELA---RLILIWRNKLPDIIKDLYPESPLSLPISPANAIW-- 147 ++ +Y L P +++ A +L + +I D+ P + S I + I Sbjct: 129 VVSNYGLLLPTEPGVTIMDGATQWQLAWETARNVTEIDVDIAPSTLASRIIELGSNIDSN 188 Query: 148 ------LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + + I IE +K + + + + + + + R E Sbjct: 189 LSSPQAIREETEAFISNIEQTPQKGKREGLIGDLQGIVDKQRERLEILPLVEQVRARCNE 248 Query: 202 LNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 N ++ R + + I++ + + + + G Sbjct: 249 ENVATFGMQMARAARLATDFAEVGEEERRRFKNIMLDEYQDTSHTQRLFLRALFS---GG 305 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D W T ++ ++ S + + K+L Sbjct: 306 CVTAVGDPMQAIYGWRGATAENLVQFVNDFPRSDG--------------QPAEKKQLTIS 351 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + + R + L+ + +V L EE IA Sbjct: 352 WRNPQSVLQLANAVSDRAFAGQARTVEALDAGP---KAGQGEVQLAFTATGEEEVAYIAD 408 Query: 377 ALRMSLDENKK-----KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILT 431 + L E + +A++ + L+ G+ I L +T Sbjct: 409 CMEAQLRECEAAGNKLDAAILVRTNAESAVYLDALSERGVPAIIVGLAGLLHLPEVMDIT 468 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKN-----------ALELVALRGNK 480 S + + + L+ P G + R + A ++ + Sbjct: 469 SAMKILVDPSSDQDALRLLLSPQFNLGAADVEALRTRVDQLAMAGKDELARKMGNVEETS 528 Query: 481 NSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE---------------------L 519 +S + L + + + +++ D Sbjct: 529 DSSPLSQLARQYDKLVEDAEAASSAVGLGHAIADPDIRFYDGTPLARGSVEKNGRLVCSE 588 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFE 578 ++ D + I L N + + + + V + Sbjct: 589 SLNYTDEAMVRIAQLGASLRKLRRFSLNKPLPELVEDIATEFGIRVEAAAGQYGSATAIT 648 Query: 579 EEGKTLSSLFSKIIETGSCIKAN----AIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 F I T S ++ + +++ DG P + + I+ Sbjct: 649 RPTTAHLDRFVDIAATYSQNISDDVTGFLNYLEFAVEHDDGLERAPMNMPENCVQIMTMH 708 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 +S+ L ++T+ + G+ + +L+ +Q T + +A Sbjct: 709 KSKGLEWETVAVPGIT-TSKFDKVDLSSWLTNSVQLPPGAITQVDPLTASA 758 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 73/247 (29%), Gaps = 25/247 (10%) Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPH 798 L + + T R K P + S SE + +I DP A ARR + Sbjct: 929 LSEVWETETTILVDEILRAKAAEIHLPMPTSMSTSEYQAMIADPVAF-ARRKARPVPFKP 987 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 + RGT FH + + ++ D + Sbjct: 988 NR----FARRGTAFHAWLENRFGAHSLLDDEDL------FGDQLDDFLGTEQVASERELE 1037 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDY 918 E + V +P ++AI + G D + +G +TD+ Sbjct: 1038 KLK------ANFEASEWADRTPTHVEVPFEIAIGQR--RVVGRIDAVF-NDNGKWSVTDW 1088 Query: 919 KTGDNPKKETAQKLIDPQLSLEAAA----LKAGSFSQIDCRKVANLFYIRLKQKFKIDCI 974 KTG P+ + + QL++ A L+ A FY+ + D Sbjct: 1089 KTGQMPRGKEREVA-ALQLAIYRLAWSDRLREMGMETAPEEIEAGFFYVSAGRTLIPDEA 1147 Query: 975 TNDKKKY 981 + Sbjct: 1148 LLPSRIE 1154 >gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] Length = 1209 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 80/838 (9%), Positives = 200/838 (23%), Gaps = 156/838 (18%) Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA-NHPNGAIVLPGLDCHIPTAIWNTITE 276 EA + +++ + ++ V+ + + D + Sbjct: 394 EAALYYRAQFAEVLVDEYQDTNMVQESILRLVSNDDEATGNMFMVGDVKQSIYGFRLAEP 453 Query: 277 KSTNITSSNTTYSTHPQYS------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + T + LD ++L R + Sbjct: 454 SLFLQKYNRFTKDGDGGLRIDLAKNFRSRKEILDGTNFIFRQL-MTETVGDMRYDDDAAL 512 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----- 385 + + I ++ + + + EA IA ++ L E Sbjct: 513 RFGAQDYPDKQIPVECVWINEAKEESDEEEQEDVTAVQLEARWIAKKIKQLLAEPFFVYD 572 Query: 386 ----------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + ++ + A + E + + + + SI+ SLL Sbjct: 573 RRLKGERRLMYRDIVILCRSMSSASAMLEEFRKQNVPVYAELSSGYFSATEVSIMLSLLK 632 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 I + +A +++ P+ L L R Sbjct: 633 VIDNPYQDIPLAAVLRSPIV-------------------------------GLDEEALAR 661 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 I K + +E + L + + + + L ++T ++D Sbjct: 662 IRLAKKDGAFYEALCAFVQEPHD--DELHEKMKRWLASLSEWRTAARQK----PLADLIW 715 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 + + L + +T + +I+ + D Sbjct: 716 QLYRETNFYDYVG-GMPGGKQRQANLRALYDRAKQYEQTSFRGIFRFLRFIERLKEREDD 774 Query: 616 -ETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + E+ + ++ +S+ L F + L G + ++ + L + + Sbjct: 775 FGAARSLTEQEDVVRMMTIHKSKGLEFPVVFLAGAAKSFNMQDLRSDYVLDKDFGLGMRF 834 Query: 675 KTAEKYIGQ--------------------AAHDFEMANGTRH-LIYTRSLRENNIPTIAS 713 + + L + ++ Sbjct: 835 VHPTWRASYPTVAQLAIKKKMKWQLLAEEMRILYVALTRAKEKLYIVCTAKDMEAKKKKW 894 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------------------- 742 + + + K ++ + Sbjct: 895 QEVAYTSTWELPAYVIEKAKSYADWIGYALARHQQGICSSATVLHDPSLWDIHIVPAHEL 954 Query: 743 -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV------------ 785 + ++ ++ +P + + P V Sbjct: 955 EQEDAQANEHRDIVEAIQQLQPVAIKSEYEEEVNRRLFWTYTHAPATVLRAKQSVSELKR 1014 Query: 786 -----------YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHL 834 R+ L K +RGT+ H ++ + + Sbjct: 1015 QRDIYGGHAEQPFRKELVERPRFLQAKMMTPAERGTMMHLVMQHV-----DVTKEVTVDA 1069 Query: 835 MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA--KMAIE 892 +++ I E L + I F K ++ +P +E Sbjct: 1070 VREQIARMVNGEWLTEEQATVI--DVESIVAFFNTPIGKRMQRATRLEREVPFYLAHEME 1127 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNP----KKETAQKLIDPQLSLEAAALKA 946 + + G D + + G + + DYKT K+ ++ QL+L A++A Sbjct: 1128 GETVVVQGVIDCVFEDEHG-LVLIDYKTDRVSWMNDPKQQLKRRYKGQLALYREAIEA 1184 >gi|328881293|emb|CCA54532.1| RecB family exonuclease [Streptomyces venezuelae ATCC 10712] Length = 315 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 75/250 (30%), Gaps = 24/250 (9%) Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT 817 + P P + S S + P R I +L + RGTL H ++ Sbjct: 20 EQVPAEPRAPMSLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHAVLE 74 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSF 867 L + T M + E+ W ++ + Sbjct: 75 RLFDDPAAERTAPRARAMVPGQWERLLETKPELGQLFAEDPEGQRLAGWLGEAERLVERW 134 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 E+ + +E + + ++S G+ L G DRID+ SG V I DYKTG P+ Sbjct: 135 FSLEDPTR--LEPAERELFVETELDS-GLRLRGVIDRIDVAPSGDVRIVDYKTGKAPRP- 190 Query: 928 TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELS 987 + Q++ A + + L + L + + + Sbjct: 191 EYRDGALFQMTFYALVVWR-----LRRVIPRRLQLVYLGSGEVLTYDPVEADLRRVERKL 245 Query: 988 EKSLKNLIEI 997 + Sbjct: 246 LALWDAIRTA 255 >gi|260771454|ref|ZP_05880379.1| exodeoxyribonuclease V gamma chain [Vibrio furnissii CIP 102972] gi|260613580|gb|EEX38774.1| exodeoxyribonuclease V gamma chain [Vibrio furnissii CIP 102972] Length = 1173 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 103/907 (11%), Positives = 225/907 (24%), Gaps = 126/907 (13%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q L+ + G + + L + +L + + Sbjct: 34 QILVQSPGMSQWLKMALAQELGVAANLD---FPLPATFIWEMFTQVLPNVPKRSAFNKEA 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165 +L L+ D L + LA+ +ADI D Sbjct: 91 MTWKLMELLPS----QLDQDVFAPLRRYLQDDTDQSKLYQLAEKIADIFDGYLVYRPDWI 146 Query: 166 --WEDLHALKNEKYGMWWLLAA-DFLKIA-----SKYWTERLVELNASSPVGYQIALMRA 217 WE ++ W L ++ + + + + Sbjct: 147 AHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQGQSHYHRANLYQSFIDALAHIDLTHD- 205 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272 E L + I G + P + + H + ++ H I + Sbjct: 206 --EALRAALPKRLFIFGISSLPPRYMDALKALGEHIDVHLMFTNPCQHYWGDIRDRKYLA 263 Query: 273 TITEKSTNITSSNTTYSTH-------------------------PQYSLAKLLDFLDIKR 307 + + + TH Q LL + Sbjct: 264 RVESQRRKQLVLHPNAETHTFTVEGEVSPLKGELDDYAGDELHTAQAVGNSLLASMGKLG 323 Query: 308 EDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFS 357 D L S+ R ++ + + D L + P + Sbjct: 324 RDNLYLLAQSDNEEHELFIDVPRDSLLHQLQADILHLEEHQDDTLLDSSAHKPALPHGDR 383 Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL-----TR 408 + L + E + L + + ++ AD N + Sbjct: 384 SLTLHACHSPMREVEVLHDELLAMFDRDPELKPRDIIVMVADINAYSPYIQAVFGNAPGE 443 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSR 466 I IS + + L+ + L++ P +A+F Sbjct: 444 RFIPYSISDRTADQESPILNAFMQLVALPQSRCLASELLELLETPAMMARFALDASEFDT 503 Query: 467 AKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEE 515 AK +E +R N + + + + ++ + Sbjct: 504 AKRWVEESGIRWGLNDATAQEFELPQTHQNTWQFGIARMLLGYAMPSSVGLFEAGGHAMA 563 Query: 516 DKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + + + T + I W +L + L + + Sbjct: 564 PYNEVQGMSAELAGKLAHFIDTISDYRQRLAQTQPIEAWRELLSSLLDDCFSVDLDGEMA 623 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L + TL++L ++ + G + + + G V + + + Sbjct: 624 L--KSIRDTLAALKEQLADAGYADAISPAIMGQYLHDKLSGTRVSQRFLAG-QVNFCTLM 680 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 R + F+ + L G+N+GV+P++ F ++ ++ M + Sbjct: 681 PMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRYL-FLEAMLSAQ 739 Query: 695 RHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFDNLKKRGQCYLDW---- 741 L + R +N + S + LL L G + + + + Sbjct: 740 HTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNYCLAGDEALPSDESGARLIEQLQFTH 799 Query: 742 -------TRKLDYTTKQPHYKRPKPFPP----------------LEAQPRTYSFSEIKQL 778 L P P E+++ Sbjct: 800 AMVPFSPQAFLTDVGSYAKEWLPAALRQGTASGTFHRALDDYLLDAIYPLELDLVELQRF 859 Query: 779 INDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLM 835 P + R LK+ +P + D G + + L+ +N + + + Sbjct: 860 WRLPVQYFFNRRLKVVFEPPLPVMEDDEPFALGGLASYQLRDALLDGLLNAPSAQARDEV 919 Query: 836 KQIIDSH 842 + Sbjct: 920 LAQFNKQ 926 >gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] Length = 1199 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 87/832 (10%), Positives = 200/832 (24%), Gaps = 82/832 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 89 GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 148 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A K+ YP S ++ + L Sbjct: 149 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 207 Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202 L++ + T E E L L + A L ++ + Sbjct: 208 ELSEHLVRPGTLETYDTELLRDLAAARLSNADLRKIPEAAEARRSLLGLTERYRAAKRSR 267 Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-------- 249 + AL R E +++ +++ + A L+S + Sbjct: 268 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGAGTAPG 327 Query: 250 ------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 P G V D W + + + + ++ + Sbjct: 328 EDGQAPSGHAPPGQAPTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRY 387 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L S ++ + + + + + + Sbjct: 388 SL-----------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDG 430 Query: 358 DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415 V EE +A +L + + A++ ++ L I +++ Sbjct: 431 MVRCALVRTHTEEIAWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEV 490 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L + L ++ + ++ L+ P + G + L + L + Sbjct: 491 VGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHR 550 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 ++ L V + + + + + + L Sbjct: 551 AGHADDADADQRLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLA 610 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + + ++ T V L + E + ++ Sbjct: 611 RELRDLRRSLADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDVAARFASLD 670 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A + +T+ +L +S+ L +D + GL G +P Sbjct: 671 GEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFP 730 Query: 656 KNTAKNPFLS-------RVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696 + + +++ + L + + G A H + Sbjct: 731 SDRGREAWIAQPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGY 790 Query: 697 LIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + +TR S+ R +++ W + + P Sbjct: 791 VTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPA 850 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR 805 + + + + A R D Sbjct: 851 LAERDADLAWPLPLDADALARRRAARDTVLAHLERLAAGEPSYGPAPADVPA 902 Score = 58.8 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 92/823 (11%), Positives = 196/823 (23%), Gaps = 52/823 (6%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 A+ L+ + A + AL+R E + + + A Sbjct: 406 LAEPLRAMHEGVEALRPAPGAERDGMVRCALVRTHTEEIAWLADSLAHLVRTGTPPGEIA 465 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L T + P L D + + + A L+ L Sbjct: 466 VLCRTAGDFPEIQAALVARDIPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLL 525 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 R + R +V +D R D +E P +D Sbjct: 526 TGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQRLADAVEGTDPAEVISLAD----A 581 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 D A + L S + + + L R+L R + L + + G+ + Sbjct: 582 LDTFLVVADAADDGLPFSAEARVRFARLARELRDLRRSLADPLMDVLHRVLATTGLEVEL 641 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L + +A A +L A + + Sbjct: 642 SASPQALAARRRETLANFLDVAARFASLDGEASLLAFLGFLRTAAQYEKGLDNALPGGEN 701 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + L + + S+ +E + + + + Sbjct: 702 TVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIAQPQVLPHALRGDAATLPALDP 761 Query: 544 TCGNLS------------ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 G + +L + + W+ K + + Sbjct: 762 HDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFL 821 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 A E + E E+ + L L++ L + Sbjct: 822 EALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDADALARRRAARDTVLA 881 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 + + + + E+ + E P Sbjct: 882 HLERLAAGEPSYGPAPADVPADGPLFEEEPFEEELFEEEPADEDWDWDALPTDRPPGPPE 941 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-----DYTTKQPHYKRPKPFPPLEAQ 766 A + + G+ + R L D + +R + Sbjct: 942 AEPDTDPVPHIPAARHPREDPAAGRLTPEEARTLASWDRDLDSLAGELRRARASVREVLV 1001 Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 P S +++ +L DP A AR + + P RGT FH + ++ Sbjct: 1002 PAALSATQLLRLAEDPDAF-ARELARPMPRPPQ----PAARRGTRFHAWVESRYEELPLP 1056 Query: 827 NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 E + ++ E + V P Sbjct: 1057 MLG--------------PDELPGGDENDAEIADERDLAELKEAFERTPYARRTPYRVEAP 1102 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 ++ + + G D + +I D+KT + + QL++ A Sbjct: 1103 FQITLAGR--VIRGRIDAVYRTGD-RYEIVDWKTTRHRTADP------LQLAVYRLAWAE 1153 Query: 947 GSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + +V+ ++ ++ + + L ++ Sbjct: 1154 --LHGLPLDEVS-ATFLYVRSGETVRPRDLPGRAELERILLDE 1193 >gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] Length = 1112 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 83/887 (9%), Positives = 205/887 (23%), Gaps = 128/887 (14%) Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170 LA L ++ + A L ++ ++ +E L Sbjct: 266 VLAVLESVFLTGEGAKAPFTAKIGTFPTKATRAAHEDLMADIEPLMGRVEDMRPHRLGLL 325 Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--------L 222 AL DF + + R + + A + Sbjct: 326 ALDRTM------ALYDFANVFVPAYEARKLAMGALDFDDLIRKAKALLTDRDVAQWVLFR 379 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNT 273 + G I++ + + P ++ + A V D + Sbjct: 380 LDGGIDHILVDEAQDTSPTQWAVIEQLTQEFATGEGARMDRERTVFVVGDKKQSIYSFQG 439 Query: 274 ITEKSTNITSSNTTYSTHPQYSL---------AKLLDFLDIKREDVKRLGNVSNEMYGRS 324 + + ++ Q I + S Sbjct: 440 ADPAAFDQMKTHF--RDAHQAISKPFEVTSLDHSFRSSQAILSVVDQTFIEDRAAGMDDS 497 Query: 325 MVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD 383 + I ++K+ + ++ F V A + A +A +R + Sbjct: 498 LTHIAFKENMPGRVDLWPVIEKSKVEDNREWFKPVDEPSATDHTVLMAQRVAEQIRYMIA 557 Query: 384 EN-------------------KKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 L+ L + + I + + + Sbjct: 558 HETIPEEVGNTGAYNRRSITEGDFLILVQRRSELFAEIIRACKAADLKIAGADRLRVGAE 617 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 L L ++L+ + D +++A+ ++ PL + + + +NS Sbjct: 618 LAVKDLAAVLSFLALPEDDLSLASALRSPLFGWSEQDLFTLAHHRPKNSFLWEALRNSDH 677 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L +L+ + + + R+ LL + + + + Sbjct: 678 NETLA--ILNDLRGKSDFLRPYDLIERILTRHDGRRKLLARLGPEAEDGIDALLSQALAY 735 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 W E + + + + + + Sbjct: 736 E------------------STGVPSLTGFLTWMETDDLEVKRQMESQGDRIRVMTVHGAK 777 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 ++ ++ + L + + ++ + Sbjct: 778 GLEAPIVILPDTAKRDVKVNQELL---------PADDHVIWKTPAKSSAPSVIALRDKVI 828 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 ++ + + L + + + + + L + Sbjct: 829 AKQARERMRLL------------YVAMTRAEKWLIAGAAGDIGEGDASWYNLVADGMDRR 876 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 + L G L +LD+ KP + P Sbjct: 877 GAYDAAL---GDMPLRRVSELDWDAPDLVTTDAKPDTIVAPPQFGALPIPKATKTIAPSE 933 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 + +I+K D D RGT H ++ L ++ + Sbjct: 934 LPGDKIMKGDP--AGDDIDDAKARGTQIHLLLEHL--------PMAAEEQRHELGLQLLQ 983 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK---IFVNIPAKMAIESIGIHLTGF 901 ++ + + +K + + I +G + G Sbjct: 984 TDDP-------------ALVDDVIALIKKPELGWLWNANALTEVVITADIPQLG-RVHGA 1029 Query: 902 ADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 DR+ + + DYK+ E + QL+ AL+ Sbjct: 1030 IDRLIIGPD-TITAIDYKSNRLVPSTPEDTPIGLQRQLAAYDYALRE 1075 >gi|308187974|ref|YP_003932105.1| Exonuclease V gamma subunit [Pantoea vagans C9-1] gi|308058484|gb|ADO10656.1| Exonuclease V gamma subunit [Pantoea vagans C9-1] Length = 1125 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 98/940 (10%), Positives = 222/940 (23%), Gaps = 93/940 (9%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 AS + V + Q L+ E + G + I L + +L + Sbjct: 28 DPFASEMVLVQSPGMAQWLQMELAQTFGIAANIE---FPLPASFIWEMFVRVLPDIPVES 84 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S +L + + + + + L L+ +AD+ D Sbjct: 85 AFSKASMGWKLMHRLPVMLEQE----EFISLRHYLHDDGDKRKLYQLSSRVADLFDQYLV 140 Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 W + L +T+ L + ++ + Sbjct: 141 YRADWLNSWERGETIDGLGEAQRWQAALWRDLVSYTQALRQPEW-HRANLYSRFIQTLEQ 199 Query: 221 HLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + I G + P + + + H + ++ I + Sbjct: 200 AKTTPENLPKRVFICGISALPPVYLQALQALGRHIDIHLLFTNPCRDYWGDIQDYAFLAK 259 Query: 279 TNITSSNTTYST-------------------HPQYSLAKLLDFLDIKREDVKRLG----- 314 + Q LL D L Sbjct: 260 LQSRQRRRHGADESRGLFRDAEQAPALFNDAGEQQLTNPLLASWGKLGRDNLFLLSQMES 319 Query: 315 ----------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 N ++ + ++ + +A+ Sbjct: 320 NDDIDAFVDVEPDNLLHCMQHDLLNLQDNAVIGLNAAELAHSDQKRCLDPEDRSIAVQVC 379 Query: 365 DNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFGINIDI 415 + + E + L ++ + + ++ AD + + + I Sbjct: 380 HSAQREVEVLQDHLLAMMEADPTLKARDIIVMVADIDAYAPFIQAVFANAPADRYLPFAI 439 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAKNALEL 473 S +LL + L+ P F E L + + Sbjct: 440 SDRRASQAHPAIVAFLNLLALPDSRFVSEDVLALLDVPALAAHFSIDESGLRLLRRWVSE 499 Query: 474 VALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV-D 525 +R + + L + H + + LV + Sbjct: 500 SGVRWGLDDASVEALSLPITGQHTWRFGLQRMLLGYAMESHNGDWEGILPYDESSGLVGE 559 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 L + + W L L + L E + Sbjct: 560 LAGHLAELLSRLNHWRQLLAEPRPLVAWLPLCRELLNAFFSPDAETEAALLLVE--EQWQ 617 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 L ++ D + +D + + + + + R + F + Sbjct: 618 QLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAG-QINFCTLMPMRSIPFQLVC 676 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR- 704 L G+N+GV+P+ A F QS ++ M + + L + R Sbjct: 677 LLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYL-FLEAMISAQQQLYISYIGRA 735 Query: 705 -ENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKR 756 ++N S + L L G + + + + + Sbjct: 736 IQDNTERYPSVLVTELLDYIGQSFYLEGDGHLELDESAERVRMHLQHLHSRMPFAAENFQ 795 Query: 757 PKPFPPLEAQPRTYSFSEIKQLIND---PYAVYARRILKLDFIPHFKKDPDRTDRGTLFH 813 P A+ + Q D P L L+ F + P R Sbjct: 796 PAARLQSFAREWLPAAQGAGQPQPDFVQPLEAPLIDALTLEAFLRFWRHPVRAWFHQRLG 855 Query: 814 NIITELIKKRINKNTPEINHLMKQIIDSHFEKENL--PPHIDIIWRHLFHKISH--SFLE 869 + + +++L + I++ + + H +F E Sbjct: 856 VSFWLEENELPDSEPFALDNLERYQINAQLLNALVEGEDTQRLYAHHRAAGNLPYGAFGE 915 Query: 870 HEE-KIQSSIEKIFVNI--------PAKMAIESIGIHLTG 900 + ++++ + ++ ++ + LTG Sbjct: 916 LFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQVSLTG 955 Score = 44.1 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 70/731 (9%), Positives = 163/731 (22%), Gaps = 60/731 (8%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV----VEEKFTADLLLSYNLNPPVSN 105 A + L + ++ P I + ++ + D+L ++ ++ Sbjct: 425 VFANAPADRYLPFAISDRRASQA--HPAIVAFLNLLALPDSRFVSEDVLALLDVPALAAH 482 Query: 106 IQRLLELARLILIWRNKLP-DIIKDLYPESPLSLPISPANAIWLAKN--LADIIDIIET- 161 RL+ W ++ D LSLPI+ + L Sbjct: 483 FSIDESGLRLLRRWVSESGVRWGLDDASVEALSLPITGQHTWRFGLQRMLLGYAMESHNG 542 Query: 162 --EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E D + + L +W + L E + Sbjct: 543 DWEGILPYDESSGLVGELAGHLAELLSRLN----HWRQLLAEPRPLVAWLPLCRELLNAF 598 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 T+ +++ + + A++ L + + Sbjct: 599 FSPDAETEAALLLVEEQWQQLIEYGMDARFEEAIPVALLRDDLRSRLDQQRISQRFLAGQ 658 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD---- 335 + + P + L + + LG + R S+ Sbjct: 659 INFCTLMPMRSIPFQLVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDDRYLFLE 718 Query: 336 ----TSDMRNTDILENKIPNIQKCFSDVALIEA-----------DNEREEAISIAIALRM 380 + I + + + V + E + E A +RM Sbjct: 719 AMISAQQQLYISYIGRAIQDNTERYPSVLVTELLDYIGQSFYLEGDGHLELDESAERVRM 778 Query: 381 SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKL 440 L + + A R R + AG P + L + Sbjct: 779 HLQHLHSRMPFAAENFQPAAR-LQSFAREWLPAAQGAGQPQPD-----FVQPLEAPLIDA 832 Query: 441 NDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQK 500 A +HP+ + +S E + D ++ + + Sbjct: 833 LTLEAFLRFWRHPVRAWFHQRLGVSFWLEENE--LPDSEPFALDNLERYQINAQLLNALV 890 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + + Q + + T + S L + Sbjct: 891 EGEDTQRLYAHHRAAGNLPYGAFGELFWQAQRDEMQEVAAEVVTQRSDGESWEVNLQLEQ 950 Query: 561 LQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + + + L + ++ +E + R Sbjct: 951 VSLTGWLTQVQSDGLLRWRPGVLNMNDGLLLWLEHLVYCALGGTGSSRMFGRQQSRWCFL 1010 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + L + L G+ + + N + +L+ ++ Sbjct: 1011 AVPQAEAIAA--------LNEYVAGYLAGMRQPLMLLNKSGGAWLTASYDKKSQQLLTDE 1062 Query: 680 YIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 L+ +LQRL + + + Q + Sbjct: 1063 A--------TQLKARNRLLTAWQGNYQVEGEGGDPYLQRLCRVLDEPQLQQITEAAQRWY 1114 Query: 740 DWTRKLDYTTK 750 + Sbjct: 1115 LPVLAAHQDDE 1125 >gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] Length = 1121 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 77/845 (9%), Positives = 188/845 (22%), Gaps = 113/845 (13%) Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKY--WTERLVELNAS 205 L L + +ET + L A+ + FL + L + Sbjct: 303 LMDQLEPFMARVETARPRRLALDAMDKSLVLHDFARV--FLPEYERRKQLRGWLDFDDLI 360 Query: 206 SPVG--YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA---------NHPN 254 + A + + G I++ + + P ++ +A Sbjct: 361 VKARNLLNDPAVAAWVLYRLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADV 420 Query: 255 GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS----------THPQYSLAKLLDFLD 304 + D + + + + +S L Sbjct: 421 ERTIFVVGDKKQSIYSFQGADPDAFDRMQAEFGRRLEETGEGLQNASLAFSFRSSAAILG 480 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + + R + + + + V Sbjct: 481 LVDVVF---DGQDRAGFARDAKHQAFKSDLPGRVDLWPLVEKTEDEEDRDWTDPVDRPSP 537 Query: 365 -DNEREEAISIAIALRMSLD--------------------ENKKKSALITADRNLARRVK 403 + A IA ++ +D L+ +L + Sbjct: 538 RHHSVILAERIAGQIKEMIDSGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSDLFSEII 597 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 G+ I + + + L + +LL + D +++A +K P+ + + + Sbjct: 598 RACKATGLPIAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLF 657 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 E+ + + +LD + Q + R+ A LL Sbjct: 658 DLAH-RRTEMHLWPALRARSEAFPETMAILDDLRGQADFLRPYDLIERILTRHLGRAKLL 716 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 + + + + +W + + Sbjct: 717 GRLGTEAEDGINALLSQALAYERT------------------EVPSLTGFLVWMQTDDLE 758 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + + + ++ ++ T + + + GT R+ Sbjct: 759 IKRQMGAASSMIRVMSVHGSKGLEAPIVILPDTTKRRPSPAPEVMEVEGTPLWRM----- 813 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + + M + ++ + + + Sbjct: 814 ----------------SSDQMPPAMDAARAFAQEKQANERLRLLYVALTRAEKWLIVAGA 857 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPL 763 + + W QR+ T G L W + Sbjct: 858 GDLDKGG--DSWYQRVEAALKTMDALPFDAPGGDGLRWAHGDWNAPPFVPSDLTEEEEIT 915 Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 ++ +K + + RGT H ++ L Sbjct: 916 LPDVFRHAAPAYVAPTATLRPSEDLGGVKALPGDSGLSEEEAKARGTALHLLLEHLPNVP 975 Query: 824 INKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFV 883 H+ + + L E + Sbjct: 976 QADWDSRAEHI-----------------AQHDDWQVLLIEARQVLSSPECKEIFAPNTLA 1018 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQKLIDPQLSLEA 941 +P + + G DR+ + V D+K+ ET + + Q+ Sbjct: 1019 EVPITADLGDT--RMHGIIDRLVVTPD-RVLAVDFKSNAVVPQSPETCPEGLLRQMGAYD 1075 Query: 942 AALKA 946 AAL+ Sbjct: 1076 AALRQ 1080 >gi|251780603|ref|ZP_04823523.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084918|gb|EES50808.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1152 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 ++S S +++ P++ + + LK + D G+ H+I+ K + Sbjct: 773 SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830 Query: 829 PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875 + M ++ID+ ++++ + + F ++ + E+ + Sbjct: 831 AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890 Query: 876 SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922 E + + S ++L G DRID L G + I DYKTG+ Sbjct: 891 GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + A +K + + Y ++ D I K Sbjct: 951 KHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPGAVLYFKVD-----DPIIKTKGD 1005 Query: 981 YSADELSEKSLKNLI 995 + +EL ++ L NL Sbjct: 1006 ITTEELEKEVLSNLK 1020 >gi|188588814|ref|YP_001919479.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str. Alaska E43] gi|251764546|sp|B2UX56|ADDB_CLOBA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease AddB gi|188499095|gb|ACD52231.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str. Alaska E43] Length = 1152 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 35/255 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 ++S S +++ P++ + + LK + D G+ H+I+ K + Sbjct: 773 SFSVSRLEKYAECPFSYFIQYGLKAKNRK--VYEFTPPDLGSFVHDILDSFTNKVKKEKI 830 Query: 829 PEINHLMK-------QIIDSHFEKENLP----PHIDIIWRHLFHKISHSFLE--HEEKIQ 875 + M ++ID+ ++++ + + F ++ + E+ + Sbjct: 831 AWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMRR 890 Query: 876 SSIEKIFVNIPAK---------MAIESIG-IHLTGFADRIDLLK-SGF--VDITDYKTGD 922 E + + S ++L G DRID L G + I DYKTG+ Sbjct: 891 GEFEVFNNEFSFGSYNDGEAIVLELPSNEKVYLNGRIDRIDTLDLEGSTYLRIVDYKTGN 950 Query: 923 NP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + QL + A +K + + Y ++ D I K Sbjct: 951 KHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPGAVLYFKVD-----DPIIKTKGD 1005 Query: 981 YSADELSEKSLKNLI 995 + +EL ++ L NL Sbjct: 1006 ITTEELEKEVLSNLK 1020 >gi|160945249|ref|ZP_02092475.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii M21/2] gi|158442980|gb|EDP19985.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii M21/2] Length = 892 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 81/717 (11%), Positives = 184/717 (25%), Gaps = 114/717 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 +V T +A EL+ + G + GD V + Sbjct: 111 NVMAITFTNKAAGELKERLRRMLGGEE---------GDEVFASTFHSACVRI-------- 153 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R E + D + + + +S + K + + + + Sbjct: 154 LRRWAEEIGYPRSFTIYDTDDAQRVMKT--VYKELSIDDKFLPIKAAINQMSRWKDQLVS 211 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 E + + ++L E A ++ AEH Sbjct: 212 PEQ----ALADHARDVKSTQT--ARIYAAYEKKLKEAGAFDFDDLIYQTVQLLAEHPDVR 265 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + A RL+S + V+ D + T ++ Sbjct: 266 EFYQNKYRYLLVDEYQDTSVAQFRLVSLLTGPERNICVV--GDDDQSIYRFRGATIENIL 323 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 G + + S + Sbjct: 324 NFEKLYP--------------------------GTKTIRLEQNYRSTSNILNAANCVIQH 357 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNL 398 NT+ + V + A+NE++EA IA + L E + A++ Sbjct: 358 NTERKGKTLWTDNGEGDKVQVYTAENEQDEASHIADIIGQHLKEGGHLADHAILYRMNAQ 417 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 + ++ TR GI I G + + S ++ + D + + ++ P Sbjct: 418 SAPIESYFTRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP----- 472 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 K +D+ + + + + Q Sbjct: 473 -------------------ARKIGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVM 513 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + + L T ++ + SD +LT Sbjct: 514 PLLKFWQIYQRLQDSLATRTLDEFA-------SDVIELTGYKAMLEADAAKGHEDAADRL 566 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + L + + +A + + + + E S + ++ ++ Sbjct: 567 QNLGQLVNNVKNYCDQ-HGEEATLEGY---LEDIALISDIDSYNESSDQVVLMTIHSAKG 622 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697 L F + L G+ EGV+P +K + + + + L Sbjct: 623 LEFPYVFLIGMEEGVFPSEMSKY--------------SEADLEEERRLAYVGITRAKKEL 668 Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 + S+ SR+L+ + + + ++ W + T Sbjct: 669 YISNSVTRMLYGRTQRNEPSRFLREIEPEYIEETRSPVLEQRSHMGGWGSEYSDTVP 725 >gi|291618662|ref|YP_003521404.1| RecC [Pantoea ananatis LMG 20103] gi|291153692|gb|ADD78276.1| RecC [Pantoea ananatis LMG 20103] Length = 1125 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 117/974 (12%), Positives = 242/974 (24%), Gaps = 126/974 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL + DPL+ AS + V + Q L+ E G + I L Sbjct: 11 DLLKSLAARVIKLDPLD-DPFASEMVLVQSPGMAQWLQMELAHTFGIAANIE---FPLPA 66 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + +L + S +L + L + LS Sbjct: 67 SFIWEMFVRVLPDIPVESAFSKASMSWKLMHRLPS----LLLQDEFASLRHYLSDDGDKR 122 Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 L+ +AD+ D W E + W A +TE L Sbjct: 123 KLFQLSARVADLFDQYLVYRADWLNSWERGQHIDGLGDAQIWQAALW---RDLVNYTEEL 179 Query: 200 VELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 + + + + I G + P + + + H + + Sbjct: 180 GQPKW-HRANLYARFIHTLEQTQTPPANLPERVFICGISALPPVYLQALQALGRHIDIYL 238 Query: 258 VLPGLDCHIPTAIWNTITEKSTNITSSNTTYST-------------------HPQYSLAK 298 + I + Q Sbjct: 239 LFTNPCRDYWGDIQDYAFLAKLQSRQRRRHDREEYRGLFSDVARAPALFSDEGEQQLTNP 298 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI--------- 349 LL D L + + + S + L++K Sbjct: 299 LLASWGKLGRDNLYLLSQMDLNSEIDAFVDVEEDNLLHSMQHDLLNLQDKAVIGLTADEL 358 Query: 350 ------PNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLA 399 + +A+ + + E + L ++ + + ++ AD + Sbjct: 359 AYSGQKRCLDPADRSIAIQVCHSAQREVEVLQDHLLARMEADPGLKARDIIVMVADIDAY 418 Query: 400 RRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + + IS LL + L+ P Sbjct: 419 APFIQAVFANAPAERYLPFAISDRRASQAHPAIVAFLHLLALPDSRFVSEDVLALLDVPA 478 Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKN 501 F E L + + +R + + L L + Sbjct: 479 LANHFSIDESGLRLLRRWVSESGVRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYAME 538 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 + H +E L L H+ + ++ L ++ + W L L Sbjct: 539 SQHGDWQGILPYDESSGLVAELAGHLAELLSRLNHWR---QVLSEPRPLEAWLPLCRELL 595 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + L E + +L ++ + D + +D + + + Sbjct: 596 NAFFTADPETEAALLLVE--EQWKALIEYGMDARFDEPIPVVLLRDDLRGRLDQQRISQR 653 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + + R + F + L G+N+GV+P+ A F QS ++ Sbjct: 654 FLAG-QINFCTLMPMRSIPFSVVCLLGMNDGVYPRTLAPLGFDLMQQQSRKGDRSRRDDD 712 Query: 682 GQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG------TDFFDNLKK 733 + + + L + R ++N S + LL G D +L + Sbjct: 713 RYL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELLEYIGQSFYLPGDEDQDLDE 771 Query: 734 RGQCYLDWTRKLDY------------------TTKQPHYKR----PKPF---PPLEAQPR 768 + L + R P+P P L Sbjct: 772 SARRVRSHLEHLHSRMPFAPENFQPASAAHSFAREWLPAARGTGQPQPDFVQPLLTLPVE 831 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 T + + + P + ++ L + F + PD + + N Sbjct: 832 TLALEQFLRFWRHPVRAWFQQRLGVSFWLEENELPDSEPFAL---DSLERYQINAQLLNA 888 Query: 829 PEINHLMKQIIDSHFEKENLPPHI--DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIP 886 ++ H NLP ++ W+ ++ + + Sbjct: 889 LVTGEDTDRLYAHHRAAGNLPYGAFGELFWQAQREEMQEVAADVTSQRSEG-------ES 941 Query: 887 AKMAIESIGIHLTG 900 ++ ++ G+ L+G Sbjct: 942 WEINLDLDGVSLSG 955 >gi|300724826|ref|YP_003714151.1| exonuclease V subunit gamma [Xenorhabdus nematophila ATCC 19061] gi|297631368|emb|CBJ92063.1| exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Xenorhabdus nematophila ATCC 19061] Length = 1135 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 91/745 (12%), Positives = 187/745 (25%), Gaps = 100/745 (13%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q L+ + E G + I L + +LL + S Sbjct: 34 VILVQSPGMSQWLQIQLAEKLGIAANIE---FPLPATFIWQMFTQVLLDVPKDGAFSKDA 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +L L+ + + L L I LA +AD+ D KW Sbjct: 91 MKWKLMTLLPDLLAE----PEFLALSHYLDQDIDKRKIHQLAGRIADLFDQYLVYRPKWL 146 Query: 168 DLHA---LKNEKYG-MWWL-LAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + L + W L ++ + P+ ++ L + L Sbjct: 147 EKWENNQLVDGLSSNQLWQKRLWSELVEYTRQLQQ---------PLWHRANLYQRFISAL 197 Query: 223 M------KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW----- 271 + I I G + PA ++ T+ H + ++ + I Sbjct: 198 EEGNFPLENLPARIFICGISTLPPAYLQVFKTLGQHIDIHLMFTNPCQYYWGDIQSYSFL 257 Query: 272 --------------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVS 317 + +S+ Q LL D L + Sbjct: 258 TKLNSRKPKHYKNSQLLERFKDPENASSLFNEEGEQNLNNPLLASWGKLGRDNLYLLSQL 317 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIP---------------NIQKCFSDVALI 362 + R+ LE+ + + + Sbjct: 318 EPDSDIHAFVELEPGCILHQIQRDILNLEDHAQIGSTENTFKNSLKKRAVDRSDRSLTFH 377 Query: 363 EADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL-----TRFGINI 413 + + E + L LD++ + ++ AD + + I Sbjct: 378 SCHSPQREIEVLQDQLLRLLDDDPSLTPRDIIVMMADIDNYAPYIQAVFGNAPEDRYIPF 437 Query: 414 DISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALEL 473 IS +LL+ + L++ P F L Sbjct: 438 AISDRKARQAHPVLQAFITLLDLPQSRFTAEQVLALLEIPALAGKFA--IHEEGLRLLRR 495 Query: 474 VALRGNKNSYDIMDLKSLV---------------LDRIATQKNNTHVPHWQSRLSEEDKE 518 D + + ++ P +E Sbjct: 496 WVKESGICWGLDDDNIEALSLPVTGQNTWHFGLTRMLLGYAMDSNAGPWNDVLPYDESSG 555 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 LA L + L+ + +++DW + L+ + L Sbjct: 556 LAAELAGQLA---EFLMELNRWRKILSEEQTLTDWLAVCPQLLETFFESDDETELVLAL- 611 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + + + + D + D E + + +L + R Sbjct: 612 -ITQQWQKVIEHGLNAHYEGRVPLVLLRDELAFRFDDEKISQRFLAG-SLNFCTLMPMRS 669 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-- 696 + F + L G+N+GV+ P L + ++ + K + F A + Sbjct: 670 IPFKVVCLLGMNDGVY---PRTIPLLGFDLMAEKTQRGDRKRRDDDRYLFLEALASAEQF 726 Query: 697 LIYTRSLRE--NNIPTIASRWLQRL 719 L + + ++ S + L Sbjct: 727 LYISYIGKSIRDDTECNPSVLVNEL 751 >gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] Length = 828 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 89/750 (11%), Positives = 194/750 (25%), Gaps = 110/750 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + ++P V T +A E+R I++ G ++T + + + Sbjct: 55 TAVLTRRIAYLLAARDVSP---GQVLAITFTNKAAAEMRERVIDLVGPRATYM-WVSTFH 110 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L +N S + L II+DL + P Sbjct: 111 STCVRILRAQSGLLAGMNSNFSIYD--------ADDSKRLLGMIIRDLELDPKKFSPRGV 162 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 AI + E E AA + + RL Sbjct: 163 GVAISN----------FKNELVGPEQAVEAAASD-----EPAAQQIARIYAEYQRRLRAA 207 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGA- 256 NA + H + +++ + A L+ + A Sbjct: 208 NAFDFDDLIGETVALLHAHPEVAEYYRRRFRHVLVDEYQDTNHAQYVLIRELVGEVPTAG 267 Query: 257 -----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + D + T ++ + + L+ + Sbjct: 268 GLEPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETIL---------LEQNYRSTQ 318 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + +N + R+ L D+ D + AD++R+E+ Sbjct: 319 TILSAANAVIARNENRRDKRLWTDSGDGEL-----------------IVGYVADSDRDES 361 Query: 372 ISIAIALRMSLD--------ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 IA + D A+ +R ++ R GI + G Sbjct: 362 TFIAKEIESLTDYSIGGSSSHKYSDIAVFYRTNTGSRALEEVFVRHGIPYKVVGGTKFYE 421 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLS-----------------R 466 + + L + +D +++ ++ P G + Sbjct: 422 RKEVRDVVAYLRVVANPDDAVSLRRILNTPRRGIGDRAEACVAVHSENTGRSFYESLIDA 481 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVL--DRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 A + ++ R K +DL + A + E+ LV Sbjct: 482 AAGKVAMLNTRAIKQIGGFVDLIEGLRTDFLTAFGAAGESDEDVAFIDATEEGADIGELV 541 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 D I++ + + + G + L + + E + Sbjct: 542 DAIVERTGYRGELEASNDPQDGAR---------LDNLNELISVAQEFSRDAAELAEDEAA 592 Query: 585 SSLFSKIIETGSCIKANAIEWIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + + + + R+ + + + E + ++ ++ L F Sbjct: 593 DDDDPLESGRDTEGEPDPGSLAAFLERVSLVADADQLPDEGEGVVTMMTLHTAKGLEFPV 652 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + + G +G +P A + L + + TR+ Sbjct: 653 VFVTGWEDGHFPHMRAMGDPAELSEERRLAYVGITRAKERLYLT---------RSITRAS 703 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKK 733 + SR+LQ + ++ Sbjct: 704 WGQPVSNPESRFLQEIPQHLLDWRRTEPRR 733 >gi|116072445|ref|ZP_01469712.1| Exodeoxyribonuclease V, RecC subunit [Synechococcus sp. BL107] gi|116064967|gb|EAU70726.1| Exodeoxyribonuclease V, RecC subunit [Synechococcus sp. BL107] Length = 1077 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 90/850 (10%), Positives = 203/850 (23%), Gaps = 62/850 (7%) Query: 19 REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78 E + LL L++ P L ++ + V T + L + G S + Sbjct: 10 AEFLAQLLAQQLID------QQPGPLETLEVMVNTWPTSRWLGEQLAVANGISSLV--RF 61 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSN---IQRLLELARLILIWRNKLPDIIKDLYPESP 135 G E L L P + +LE+ +L LP E Sbjct: 62 PFPGSRFRELVRQVLDLPPKEADPWRANQLVWPVLEILPELLEQPAALPLKRWLDGREGG 121 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYW 195 + LA+ +AD D + W W Sbjct: 122 RHPQALSRDRWQLARMIADAFDDYALYRADQLAQWSASPSSAETDWQPLL---------W 172 Query: 196 TERLVELNASSPVGYQIALMRAEAEHL--MKGTKGPIIIAGSTGSIPATARLMSTVANHP 253 +LN + + + + G + P L+ ++ Sbjct: 173 RRLADQLNRPPFGLQVRDAIDRLRRGVVSADSLPKRLRLFGISALAPVQVDLIQALSGVL 232 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + + L + + L + + + + Sbjct: 233 DVEVYLLTPCPDLWQRCGSRRELLQEAWLEPPDGRWLEAAPRLEASFGRMGAEFQQLLEG 292 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI----------- 362 R + S + + +LE + L Sbjct: 293 SGDVQLGERREGDLFASPVQMAALSPGSPSLLEQLQEQLVDPDQSGGLHRIAKDQSLLFQ 352 Query: 363 EADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 A E + + L D + ++T + + + I + Sbjct: 353 AAPGPWREVQLVRDRILQWLAADPDLAPRDVLVMTPQVDRYAPLLNSVFNDADAIGVDLP 412 Query: 419 IPLSTT------LHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNA 470 L+ S + +LL + + +P + G + + Sbjct: 413 WRLTDRTQQSSPGLSMAMLNLLELAAGRLTATGLEQWLANPALQELQGLSSEDCTLMTRV 472 Query: 471 LELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L+ R + + L+ + + + + EL + Sbjct: 473 LQHTGFRWGLDATERGGDETHGLRWCLDRWLLGLVLPVRDGLAPAGAAPFQWELDP---E 529 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 +++ T L + + W L + LQ + D L Sbjct: 530 RLVRWWTLLDRMARMLEQFRRPQTCAAWVALLQSVLQELFGDGRAWSGELQTWTAALEDW 589 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + ++ + ++++ + ++ + ++ +L I R + ++ Sbjct: 590 R----LRAVDCALELDIAVVLEVLNEALSVDSGRFGH-RTGSLTISALEPMRAIPHKVIV 644 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 L GL+ V+P+ + F L + M+ LI E Sbjct: 645 LMGLDGAVFPRPNQRPGFHLLEQHRRLGDPRGSDQDRYVLLEALMSARRHLLISWCGRNE 704 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 + + G L + Q LEA Sbjct: 705 RTGEAQPPAAPVEQWLAQLQQELSSSSTDGLVLTPAANPLARSNFQIEAPLSCDRRQLEA 764 Query: 766 QPR--TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 + + L P + ++ ++ + H ++ + Sbjct: 765 RRWLDRSRPEPQQALAWPPAWTFPLADSRIS--SMPEEPLVFEELLRWMHQPQAAWLRSK 822 Query: 824 INKNTPEINH 833 + I+ Sbjct: 823 GLRPGEGIDA 832 >gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1] gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1] Length = 908 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 72/736 (9%), Positives = 175/736 (23%), Gaps = 114/736 (15%) Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKGTK-GPIIIAGSTGSIPATARLMSTVANHP 253 + E L + + E + +I+ A +L+ + + Sbjct: 187 YEEILDSHKRLTFNRMINLALTNLQEKQNVLSDVKYLIVDEYQDINRAQEKLIQLIGLNS 246 Query: 254 NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL 313 + D W EK + Sbjct: 247 E---IFIVGDPRQTIYQWRGSDEKCFEDFAVKHI-------------------------- 277 Query: 314 GNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAIS 373 + + + + + + + ++K V + + + EA Sbjct: 278 -DAETISINENRRSGRQIIEVSNQFSDYFEDEYDHLDPVRKEEGAVYIAKLSDNIHEAKW 336 Query: 374 IAIALRMSLDE----NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 IA + +D L+ + A I + + L Sbjct: 337 IADQIEKHVDAGKCSYGDIGILLRSVNTSAPPFIDIFRERNIPFIVGGKVGLFRRPEIQT 396 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + L ++ + + E +ALE +K Sbjct: 397 MGKLFAWLYDKG------FWYESQWDRENKEEGEEL-LYSALESWNDGVPSCKLHSEVIK 449 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC--ITPLVTYKTNKNSTCGN 547 L + T + L + + L + + Sbjct: 450 KLENWKKNTLDSKYESFTEVYHELLVLLNYLNLDSEDPNHAVIMANLGRFSSLLTDFESA 509 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 + + L+N+C + + E+ G + Sbjct: 510 NMLGGRQRNWERDLKNLCWYMNSYASGSYEEQPGDDIR---------------------- 547 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ +++ L + + + +N +P + A + Sbjct: 548 ----------------GVDAVQLMTVHQAKGLEWPLVFVPAMNARRFPSSMAGREQTWMI 591 Query: 668 MQSDLNLKTAE-KYIGQAAHDFEMANGTRHL-IYTRSLRENNIPTIASRWLQRLLVLGGT 725 ++ + + E + + + + + + N + S ++ L T Sbjct: 592 PRNMFDAEKYEGDIESEKKLFYVALTRAKDVLVVSHFGTLNGRNSGESTFISEGLRDSKT 651 Query: 726 DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAV 785 K + + TY+ SEI PY Sbjct: 652 TKLS-------------------AKDELPLHDLTSSKISDEILTYTPSEIILYRKCPYFY 692 Query: 786 YARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEK 845 +I + + G H + + N+ + +D +F Sbjct: 693 RLNQIWGYEPGFKERIG-----YGNTLHFCLQQAADLIKNEGYS-PISAISTAVDENFYM 746 Query: 846 ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRI 905 + + + SF++ E +I+ + A++ +TG D I Sbjct: 747 PFVNKIQGEKIKEAAKRKLISFVKKHETDMHNIQ----EVEARIEFPLQKATITGKIDVI 802 Query: 906 DLLKSGFVDITDYKTG 921 +++ DYKT Sbjct: 803 IHDGD-QLEVRDYKTS 817 >gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1239 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 75/686 (10%), Positives = 164/686 (23%), Gaps = 66/686 (9%) Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEAD 365 + ++ + PP S + + + Sbjct: 552 APTGYTAPTVIPAWSPNDNIPAQTASTPPTASPDTQPPTGGPAVTILGADPHEDLPRAQA 611 Query: 366 N--EREEAISIAIALRMSLDENKK---------------KSALITADRNLARRVKLELTR 408 + EA +A + +LDE A++ R ++ L R Sbjct: 612 SVLREREAADVATVISQALDEGWTVYDEKTSTWRPAGAGDIAILVPARTSLPFLEDALDR 671 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 I A + T L + A+ +D +A+ T ++ PL G + Sbjct: 672 ADIPYRAEASSLVYQTAEVRDLLACARALGDPSDQLALVTALRSPLFGCGDDD------- 724 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH-- 526 L G + SL+ + ++ SR + LA ++ D Sbjct: 725 --LFTWKRSGASFTLTAPVPDSLLAHPVGEAMEWLRRTYYASRWLSPSEVLAKIVADRRM 782 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTK-LTVTCLQNVCLDEHRKLPNLWFEEEG---K 582 + T + W++ + H+ E Sbjct: 783 LEVAATGPRARDAWRRVRFVVDQARAWSEVEHGGLRSYLAWAAHQGEEASRVAEAVLPET 842 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 ++ I ++ + + V+ + + +FD Sbjct: 843 DADAVRVMTIHAAKGLEFPIVILSGMTASPNRQRGVQVLWPPDGGYAVKLKASIQTEDFD 902 Query: 643 TLILGGLNEGVWP--------KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF-----E 689 + + A++ + + +S ++ + +A+ Sbjct: 903 LVQPVDEQMDEYERRRLLYVAATRARDHLVVSLHRSGTRRHSSNAELLTSANALDVPHIH 962 Query: 690 MANGTRHLIYTR--SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 T + + V DN T + Sbjct: 963 RLATPSTSALTADPASASRPEAGVPGEHFSLAPVASAASPDDNNDSPSGQKQALTTRTRR 1022 Query: 748 TTKQPHY-------KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK 800 + R + + ++S S ++ D A Sbjct: 1023 ALEVAPPLNRAEWQTRIEQARASSRRKSSHSPSGLEGTGPDVALHEADPGTAKAARDIDL 1082 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 + GT + +++ + L + + + + Sbjct: 1083 PPWSKGRYGTAIGRAVHGVLQVV---DLTTGAGLDAAVAAQCLAEGVVEYA------DVV 1133 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + S L E +++ + + + L GF D + G + I DYKT Sbjct: 1134 RALVRSALSSEIVQRAATRDHWRESYVGIPQPDGTV-LEGFIDLLYREDDGTLMIVDYKT 1192 Query: 921 GDNPKKE--TAQKLIDPQLSLEAAAL 944 P PQL L Sbjct: 1193 DAIPAAALHARIAHYTPQLQAYTTML 1218 >gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] Length = 721 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 78/703 (11%), Positives = 190/703 (27%), Gaps = 129/703 (18%) Query: 47 VTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP--PVS 104 + T +A +E+R E+ S L I + + A + NL V Sbjct: 57 LLAVTFTNKAAKEMRHRIEEMMNIPSRGL-WIGTFHGIAHRLLRAHWKDA-NLPENFQVL 114 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + L + + ++ + +S E Sbjct: 115 DSDDQLRMVKRVMREAQIDETQFPPKQAQWWISSQKD--------------------EGL 154 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 + +++ + + + + + + + L+R+ L + Sbjct: 155 RADNIQENPGDHFTSTMVR-------VYRQYEKLCQQSGLVDFGE---LLLRSHELWLHR 204 Query: 225 G--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 I++ + + +A+ N + D W Sbjct: 205 PELLAHYQQRFQHILVDEFQDTNAIQYAWLQVLAS--NRVPLTVVGDDDQSIYGWRGAKV 262 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 ++ + P L KL + +K +V + GR Sbjct: 263 ENIQQYQRDF-----PNARLVKLEQNYRSTKLILKAANSVIDNNQGR------------- 304 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITA 394 L ++ + V+L A NE++EA IA + + + ++ A++ Sbjct: 305 --------LGKELWSDGVDGEPVSLYAAFNEQDEANYIADTITSWVQDGNLRAECAILYR 356 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L R GI + G+ + L + D A +V P Sbjct: 357 SNAQSRVLEESLMRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHYRRDDAAFERVVNLP- 415 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + DL+ + S Sbjct: 416 ----------------------PRGIGAKSLADLRQYAGKQ-----------------SI 436 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E A ++D + + ++++ L Q + ++ Sbjct: 437 SMWESAQRMLDAGQMKGRAKTGLQKFLSIIEELSALAEHGTLHGLMQQTIDDSGLKEYHA 496 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKAN--AIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 E+G+ +++ + + + I + + ++ ++ Sbjct: 497 SEKGEKGQGRVENLEELVNALTTYEVEEGIDPLSEFIAQAALDAGEAQAEDHEDSVQLMT 556 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F + + G+ EG++P + ++L+ + + + Sbjct: 557 LHSAKGLEFPLVFMAGVEEGLFPHS--------------MSLEEPGRMEEERRLAYVGIT 602 Query: 693 GT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + LI T + L R + D ++ R Sbjct: 603 RAMKKLIITYAESRRLYGQEKFNALSRFVREIPGDCIQEVRLR 645 >gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] Length = 1173 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 90/862 (10%), Positives = 212/862 (24%), Gaps = 94/862 (10%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPAT 242 F I + W E N S M A I++ + P Sbjct: 352 LLGFSAILWQLWDEFRRRKNRLSFDDMIRYAMEALEHSPSYAERFKEILVDEFQDTNPLQ 411 Query: 243 ARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 RL+ V +H ++ D + Y H Y L Sbjct: 412 DRLIQAVRSHSQRLFIV--GDLKQSIYRFRHADLSLFGSYIKKAKY-GHGDYILLDTSFR 468 Query: 303 ------LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 ++ + + + T ++R ++ + ++ Sbjct: 469 SKEILVHEVNDLFSSVWKDGLGQELPLPFESLEVPHYLSTHELRQQCTVDPFLTYLEGGK 528 Query: 357 SDVALIEADNER------------EEAISIAIALRMSLDE-NKKKSALITADRNLARRVK 403 + EA + EE ++ + L K A++ R + Sbjct: 529 EGEKIREARLRQIRRLALLFSQYYEEKRTVWDKQKECLRPVQWKDMAILVPSRTSWFPLL 588 Query: 404 L--ELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 F + I + L +LLN + + + + + PL+ E Sbjct: 589 EKIFFEEFQLPIYFEGSTSYFSRSEIQDLIALLNFLDDPGKELYLMSFLSSPLSSLSLEE 648 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + + + +D + + E+ Sbjct: 649 VRDLALDAPKGYRLQAFQEKWPHL----ARQIDDWRLMAHFLGPSAVLASFLEKSDSFLR 704 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 + + + + C + R+ + Sbjct: 705 AFPAWKRRGVAANMRKAIDMAREFEE----AIGTSLPGCASYLREAMERQEKFAEPDVSN 760 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + + + ++ + + + GE + Sbjct: 761 EKENVIRVMTVHGSKGLEFPVLAVLGLERTSSAGEKGSLMPSPKMGV------------- 807 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 L + LSR+ + + + R + Sbjct: 808 ---ALSRIPGERNSGQAPLAWSLSRLFEEQEEYEEW------QRLFYVACTRARDSLILC 858 Query: 702 ----SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRP 757 R+ P S WL+ LL + + + + + K P Sbjct: 859 GHLPWRRDGYSPGDRS-WLKMLLSW-NPELLPLTDEPAAKAGGPKEERERSHKYSSVPLP 916 Query: 758 KPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK---LDFIPHFKKDPDRTDRGTLFHN 814 A S + PYA + + P D G+L H Sbjct: 917 SSEHQYLA---RISATSFALFQYCPYAYRMKHRQGHELVWEQPGEYPSEGGADVGSLVHY 973 Query: 815 IITE--LIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 ++++ K + PE + F + + R +S+L + Sbjct: 974 LLSQWDFASKPLESFFPEEEN------WDTFTETLPGKLRAVWKRPRVPSHIYSWLLTFQ 1027 Query: 873 KIQSSIEK------IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 + + +P + + + + G D + ++ + I D+K Sbjct: 1028 QGAIVGRILKNNLTVKKEVPFRADLVNGP-TMVGAIDLL-WHENDMLFIRDFK---ITTI 1082 Query: 927 ETA-QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + L QL+ A A+ + +L + L++ + + + ++ D+ Sbjct: 1083 SQVPENLYRDQLAFYALAM-----KKTLSVPRISLGFWHLREG--TEELLSSLEREDWDQ 1135 Query: 986 LSEKSLKNLIEIVTLLQNGEQP 1007 + + K + ++ + Sbjct: 1136 IEGEVRKMARQALSGPFKPVKG 1157 >gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 720 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 78/689 (11%), Positives = 163/689 (23%), Gaps = 125/689 (18%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP---VS 104 T +A E+R + G I + + A + NL + Sbjct: 60 VTFTNKAAAEMRHRIDHLIGTSQGGMW---IGTFHGLAHRLLRAH-HMDANLPQDFQILD 115 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + +L L RLI P A+W I+ + E Sbjct: 116 SEDQLRLLKRLIRALNLDEKQ--------------WPPRQAMWF-------INGKKDEGL 154 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + + + N W + + E + Sbjct: 155 RPQHIESYGNP-IEQTWQR-------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHV 206 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + +A + A V+ D W ++ Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIRMLAG--DSAKVMIVGDDDQSIYGWRGAQVENI 264 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + G + + S + Sbjct: 265 QLFLKDFA--------------------------GAETIRLEQNYRSTSNILKAANALIA 298 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397 N L + ++L A NE +EA + ++ + K +A++ Sbjct: 299 HNGGRLGKNLWTDGVEGEPISLYCAFNELDEARYVVNRIKTWHENGGALKDNAILYRSNA 358 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 +R ++ L + + I G+ S L I ND A +V P Sbjct: 359 QSRVLEEALLQQSMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGI 418 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G + R R L + L+ E Sbjct: 419 GDRTLDVVRQTAR-----DRQLTLWQSTRALLQEKALAGRAAASLQRFIELIDALAYETS 473 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 EL + + + L + + G + + +L Q +E + Sbjct: 474 ELPLHIQTDRAIKDSGLWSMYEQEKGEKGQARVENLEELVTATRQFSYQEEDQ------- 526 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + ++ + ++ ++ Sbjct: 527 -----------------------DLMPLQAFLSHAALEAGEGQADANQDAVQLMTLHSAK 563 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L F + + G+ E F S++ + E+ + M L Sbjct: 564 GLEFPQVFIVGMEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----EKL 610 Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722 T + SR++ L Sbjct: 611 TITYAESRRLYGKEAYHRPSRFVGELPEE 639 >gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 743 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 82/689 (11%), Positives = 170/689 (24%), Gaps = 118/689 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E+R + G + L + + + Sbjct: 73 QILTVTFTNKAAREMRERIGLLLGSPAEGL-WLGTFHALCARM----------------- 114 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R E L + D L + + P W A L +I + Sbjct: 115 LRRHAEYVGLTQSFTILDTDDQLRLLKQ--VMAPWQIDIKRWPAPGLLGVIQRWKDRGLT 172 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 E + ++ + A + RL +LNA + + Sbjct: 173 PERITPTEDSDFANGHARA------IYTAYQVRLKQLNACDFGDLMLHVTEILRTRPDVL 226 Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNG-AIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + +A H G A + D W ++ Sbjct: 227 AQYHRLFRYILVDEYQDTNTIQYLWLRLLAKHAEGPANICCVGDDDQSIYSWRGAEVENI 286 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + +L R + + R Sbjct: 287 LRFEKDF-----PSAKVVRLERNYRSTRHILGAAAGLIAHNSER---------------- 325 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRN 397 + V+++ + EA + + K+ A++ Sbjct: 326 ---LGKTLRPGREDAEGKKVSVLGVWDSDTEARMVCEQAEKLRAQGHALKEIAILVRAGF 382 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKF 457 R + L + G+ I G+ + + + + D +A ++ P Sbjct: 383 QTRAFEERLMQTGLPYRIVGGLRFYERAEIRDALAYMRVLSQPADDLAFERIINVPKRGV 442 Query: 458 GFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 G A + ED Sbjct: 443 GPAGLQKLHAAARANN------------------------------LPLTGGTEKLLEDN 472 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 L H+ Q + + + +++ + + L Sbjct: 473 ALKGKSAAHLRQLMEAFASTRDILAREGHVVAVEHLLEESGYMDMWRQDRSPDAPGRLEN 532 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 +E + F + E + + + L I+ ++ Sbjct: 533 LKELTRALADFGTLGE---------------FLEHVALVMDHDENGQDDYLSIMTLHGAK 577 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FDT+ L G EGV+P + + LK E+ A A Sbjct: 578 GLEFDTVFLPGWEEGVFPSQRTLD---------EGGLKGLEEERRLAYVGITRARQ--EA 626 Query: 698 IYTRSLRENN----IPTIASRWLQRLLVL 722 I + R P++ SR+L+ L Sbjct: 627 IIFHAGRRRIYANWQPSMPSRFLEELPDE 655 >gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN] Length = 639 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 85/691 (12%), Positives = 172/691 (24%), Gaps = 127/691 (18%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A +EL+ + + +P++ + + Sbjct: 52 EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162 + L R I + + I D L + + LA + I + Sbjct: 93 ----VFILRRSINLLNRENNFTIYDQSDAEKLIKYALQQHNLKPNLASKIQAHISQAKNR 148 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 EDL Y + + + ++L+E NA +R E Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198 Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 ++I + A LM ++ V D W Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + ++ Y AK+L + + Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 N LE ++ +++ + L +REEA +A + + + Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + +R + L R I +I G+ + + L +D +A V P Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G + + + A Q+ S+ + Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E + + L I L ++ + + T E Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L E++ + L + + + + ++ Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDQNLTADRVNLMTLH 553 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + L F L GL E + P + T E + + Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720 + L+Y RSL SR+L+ + Sbjct: 601 QDLLYLTAAQVRSLWGTVRMMKPSRFLKEIP 631 >gi|320526747|ref|ZP_08027937.1| hypothetical protein HMPREF9430_00025 [Solobacterium moorei F0204] gi|320132715|gb|EFW25255.1| hypothetical protein HMPREF9430_00025 [Solobacterium moorei F0204] Length = 896 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 110/356 (30%), Gaps = 45/356 (12%) Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL-KTAEKYIGQAAHDFEMA-NGTRHLIY 699 + + G + +P N + + + K G + + + Y Sbjct: 419 EVTYVIGCSGKNYPGFPVHNGLFDEDYLAKIPAYPSMNKRYGYYMNALRWIDSSAEEIYY 478 Query: 700 TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 + S + + + ++K + +D + H P+ Sbjct: 479 SYSTNDYQGK--------EMQLAYEVQSKVDMKTENIPWPIL--LVDSHMEVKHELTPET 528 Query: 760 FPPLEAQPRTY---SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 L S S ++ +PY + ++ L + + + D G + H+ + Sbjct: 529 AQQLFLDETGLLNGSVSTVESYYRNPYGYFIQKGLGI--MDQEFSELDPITIGNIQHHFM 586 Query: 817 TELIKKRINKNTPE-----------------INHLMKQIIDSHFEKENL-PPHIDIIW-- 856 L+ NK E + +K+++ +F+ L P+ ++ Sbjct: 587 YTLLSSYKNKYMHESVKRKQYALQEDGKNILTSTEIKELLRPYFDILKLTHPNEQYLYDI 646 Query: 857 -RHLFHKISHSFLE--HEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFV 913 F+ H+ + SS + + +++ G DRIDL + + Sbjct: 647 SLERLADSLSKFMTFMHDLEKDSSFIPEYFEYRLPETV-IGNVNIHGIIDRIDLYQD-LI 704 Query: 914 DITDYKTGDNP-KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQK 968 I DYK+ + ++ + Q+ + Q + YI +K + Sbjct: 705 RIIDYKSSVLSISEAEVKQGLRLQMLTYMMIVANNL--QGKKYNPTAVQYISMKDE 758 >gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511] gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511] Length = 685 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 87/707 (12%), Positives = 200/707 (28%), Gaps = 133/707 (18%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L L ++P A+ T +A E+R + + G K+ P++ + Sbjct: 34 LTTRLAYLLGEVGIDP---ANTLTLTFTNKAATEMRDRALRMIGDKAAYPPLLCTFHKFG 90 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 I+RL R ++I + +I+ L + + L +S Sbjct: 91 LIFLKFH-------------IERLGRDNRFVIIDSDDKKRLIRSLAKDQKIDLNLSF--- 134 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNAS 205 LA I + E++ A + + A + + E + E N Sbjct: 135 ------LASEISKYKNTLLTPEEVVA--KAELPDYKKAA-----RIYQLYQENIEENNLV 181 Query: 206 SPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + R E+ I++ + +L+ + + + V+ Sbjct: 182 DFDDLLMLTYRILEENEDLRKETSQRYQYIMVDEYQDTNELQYKLLRQLCSEHDNLCVV- 240 Query: 261 GLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEM 320 D W ++ Q+ + L+ + + +N + Sbjct: 241 -GDDDQSIYGWRGANIRNILDF---------HQHFDNTKVVKLETNYRSTRPILEAANAL 290 Query: 321 YGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + + L K+ + + +V L+ + +E EA +IA ++ Sbjct: 291 IEHN-----------------SKRLGKKLVSHRGDGPEVELLHSLDEAHEARNIAQKIKG 333 Query: 381 SLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 L E + + A++ L+R ++ +R G+ + G+ + S + Sbjct: 334 LLAEGVDPDEIAVLYRINALSRSLEEGFSREGLPFKLIGGMRFYERAEIKDIISYFRVLS 393 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 +D + ++ P L +D++ Sbjct: 394 NPHDDFSFLRIINKP-------------------------------KRGLGKTSIDKLMR 422 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT--YKTNKNSTCGNLSISDWTKL 556 + +Q+ S + ELA + + + L ++ + + D+ + Sbjct: 423 LAHERQQSLYQAIESSSEAELASAVSKKAAKTLKTLNETIHELQDEAEKSLYNFVDFFEE 482 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + L +E L S +K + + + + Sbjct: 483 KIGLKDFYGSMVDGFERILNIDEFYGYLRD---------SVMKNPELTLDEFLNDI--SL 531 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + + I+ ++ L F+ L + G+ E +P L Sbjct: 532 QSDQDEVEGDAITIMSIHAAKGLEFEHLYVIGMEEEFFPL-----------------LGD 574 Query: 677 AEKYIGQAAHDFEMANGTR-HLIYTRSLRE----NNIPTIASRWLQR 718 + + + HL S SR+L Sbjct: 575 GCNMEEERRLGYVAITRAKTHLTLCYSDSRFYKGRRKQLEKSRFLGE 621 >gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1162 Score = 96.1 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 87/834 (10%), Positives = 201/834 (24%), Gaps = 82/834 (9%) Query: 38 PLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK----SLGDVV---EEKFT 90 + V T +A EL + P + G+ F Sbjct: 57 GTGQVAPEQVLGLTFTNKAAGELAERVRKALIAAGVTDPDVIDPDNPPGEPTISTYHAFA 116 Query: 91 ADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK 150 LL + L + RLL A K+ YP S ++ + L Sbjct: 117 GRLLTEHGLRIGLEPSTRLLADATRYQ-LAAKVLREAPGPYPALTRSFSTLVSDLLALDG 175 Query: 151 NLADIIDIIETEEK-KWEDLHALKNEKYG-------MWWLLAADFLKIASKYWTERLVEL 202 L++ + T E E L L + A L ++ + Sbjct: 176 ELSEHLVRPGTLETYDTELLRDLATARLSNADLRKIPEAAEARRSLLGLTERYRAAKRSR 235 Query: 203 NASSPVGYQI-----ALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTV-------- 249 + AL R E +++ +++ + A L+S + Sbjct: 236 DLLDFGDQIALSAELALTRPEVGRILREEFRVVLLDEYQDTSVAQRLLLSALFGAGTAPG 295 Query: 250 ------------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLA 297 P G V D W + + + + ++ + Sbjct: 296 EDGQAPTGHPPPGQAPTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFPHADGTPATRY 355 Query: 298 KLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS 357 L S ++ + + + + + + Sbjct: 356 SL-----------------SENRRSGGRLLQLANGLAEPLRAMHEGVEALRPAPGAERDG 398 Query: 358 DVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDI 415 V EE +A +L + + A++ ++ L I +++ Sbjct: 399 MVRCALLRTHTEEIAWLADSLAHLVRTGTPPGEIAVLCRTAGDFPEIQAALVARDIPVEV 458 Query: 416 SAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVA 475 L + L ++ + ++ L+ P + G + L + L + Sbjct: 459 VGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHR 518 Query: 476 LRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLV 535 ++ L V + + + + + + L Sbjct: 519 AGHADDADADQRLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLA 578 Query: 536 TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETG 595 + + + + ++ T V L + E + ++ Sbjct: 579 RELRDLRRSLADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDIAARFASLD 638 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 A + +T+ +L +S+ L +D + GL G +P Sbjct: 639 GEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFP 698 Query: 656 KNTAKNPFLS-------RVMQSDLNLKTAEKYIGQAA------------HDFEMANGTRH 696 + + +++ + L + + G A H + Sbjct: 699 SDRGREAWIAQPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGY 758 Query: 697 LIYTRSLRENNIP---TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPH 753 + +TR S+ R +++ W + + P Sbjct: 759 VTFTRPRSLLLGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWVDEPAEDEENPA 818 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 + + + + A R D + Sbjct: 819 LAERDADLAWPLPLDADALARRRAARDTVLAHLERMAAGEPSYGPAPADVPADE 872 Score = 60.3 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 90/820 (10%), Positives = 188/820 (22%), Gaps = 51/820 (6%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATA 243 A+ L+ + A + AL+R E + + + A Sbjct: 374 LAEPLRAMHEGVEALRPAPGAERDGMVRCALLRTHTEEIAWLADSLAHLVRTGTPPGEIA 433 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 L T + P L D + + + A L+ L Sbjct: 434 VLCRTAGDFPEIQAALVARDIPVEVVGLAGLLHLPEVADLVAVCEVLQDPGANASLVRLL 493 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 R + R +V +D R D +E P +D Sbjct: 494 TGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQRLADAVEGTDPAEVISLAD----A 549 Query: 364 ADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLST 423 D A + L S + + + L R+L R + L + + G+ + Sbjct: 550 LDTFLVVADAADDGLPFSAEARVRFARLARELRDLRRSLADPLMDVLHRVLATTGLEVEL 609 Query: 424 TLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSY 483 + L + +A A +L A + + Sbjct: 610 SASPQALAARRRETLANFLDIAARFASLDGEASLLAFLGFLRTAAQYEKGLDNALPGGEN 669 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNS 543 + L + + S+ +E + + + + Sbjct: 670 TVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIAQPQVLPHALRGDAATLPALDP 729 Query: 544 TCGNLS-----ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 G + K + P G + + + Sbjct: 730 HDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRTRGPSAFL 789 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 +A + + E++ L + L D L Sbjct: 790 EALYEHCAAGHGEIEAWVDEPAEDEENPALAERDADLAWPLPLDADALARRRAARDTVLA 849 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + + +L + P Sbjct: 850 HLERMAAGEPSYGPAPADVPADEPLFEEEPFKEEPADEDWDWDALPTDRPPGPPEAEPDT 909 Query: 719 LLVLGGTDFFDN---------LKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 V + + W R LD + +R + P Sbjct: 910 DPVPHIPAARHPREDPAAGRLTPEEARTLASWDRDLDSLAGE--LRRARASVREVLVPAA 967 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S +++ +L DP A AR + + P RGT FH + ++ Sbjct: 968 LSATQLLRLAEDPDAF-ARELARPMPRPPQ----PAARRGTRFHAWVESRYEELPLPMLG 1022 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 E + ++ E + V P ++ Sbjct: 1023 --------------PDELPGGDENDAEIADERDLAELKEAFERTPYARRTPYRVETPFQI 1068 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSF 949 + + G D + +I D+KT + + QL++ A Sbjct: 1069 TLAGR--VIRGRIDAVYRTGD-RYEIVDWKTTRHRTADP------LQLAVYRLAWAE--L 1117 Query: 950 SQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEK 989 + +V+ ++ ++ + + L ++ Sbjct: 1118 HGLPLDEVS-ATFLYVRSGETVRPRDLPGRAELERILLDE 1156 >gi|256828188|ref|YP_003156916.1| exodeoxyribonuclease V subunit gamma [Desulfomicrobium baculatum DSM 4028] gi|256577364|gb|ACU88500.1| exodeoxyribonuclease V, gamma subunit [Desulfomicrobium baculatum DSM 4028] Length = 1064 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 97/946 (10%), Positives = 227/946 (23%), Gaps = 106/946 (11%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + L V DP+ P TI V + + + + G + Sbjct: 12 LENLAELLAE---VLKTPLDPMEPE-----TILVQSGGMQRWVSMQLARRHGVCAN---T 60 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 +L P+S + L + L+ ++ + P + Sbjct: 61 RFPFPVGFAYALCRELRADLPREYPLSQERMLWRITHLLRGLLDE-----PEFAPLARYV 115 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHA--------LKNEKYGMW-WLLAADFL 188 S ++ LA+ +A D +W L W Sbjct: 116 QEDSELRSVQLAERIAYHFDQYLIFRPEWAARWENHEPSGNFLLPGHVASEAWQARL--- 172 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-KGPIIIAGSTGSIPATARLMS 247 W E + ++ + + + + + G P L+ Sbjct: 173 ------WRELIRDMGGEHRAALLRRAIASLEKGTSLPDLPSRVCVFGIPTLPPVYLDLLK 226 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 ++ H + L + + + + L L Sbjct: 227 ALSRHSQVHVFLLSPCQKYWGDLLTHRERRRAYRAGEHASPERPEDA---MPLAGLGAVG 283 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 ++ L + + + + L+ + + + + + Sbjct: 284 KEFLELLMERDALET-GLYEEPVGDTMLGQLQADLLDLDVREEKTDFSDTSIQVHCCHSP 342 Query: 368 REEAISIAIALRMSLDEN----KKKSALITADRNLARRVKLEL----TRFGINIDISAGI 419 E + + L ++ + ++ D V + GI IS Sbjct: 343 LREMEILKDLILDLLAKDTSLSPQDILVMNPDIERYAPVIQAVFGTAGEDGIPFSISDRK 402 Query: 420 PLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN 479 P + LL + + L++ P + S + LE V G Sbjct: 403 PTKAAETIRLFLELLEFGQHRFEASRVCALLEAPPVRQRLG-LDASDTQRVLEWVRASGV 461 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + D+ + L + + + + L+ Sbjct: 462 RWGLDLDFRRKAGLGDFGQNTWESGLSRLYLGYMTGAADPLGGIAPLALRGSAEQELLGR 521 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHR----KLPNLWFEEEGKTLSSLFSKIIETG 595 ++ + T T + E + + + Sbjct: 522 VTAWIDELATLWSRLRDTRTPADWQDCLLWILDAFFPQDPAQAEHLLAIRKAVTDLTRDM 581 Query: 596 SCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWP 655 +A+A + +I + + E+ +S L G R + F + L GL Sbjct: 582 GDFEADARTMLYLIRKRL-DESGGESGFLASGLTFCGLKPMRSIPFRVICLTGLT---ST 637 Query: 656 KNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN--GTRHLIYTRSL--RENNIPTI 711 ++ L + + + + F + +LI T + +N+ Sbjct: 638 AFPRQDIPLGFDLMAARPRPGDRSHREDDRYLFLESIISARDNLILTYPGLSQSDNLEAP 697 Query: 712 ASRWLQRLLVLGGT--------------------DFFDNLKKRGQCYLDWTRKLDYTTKQ 751 S + LL F + G ++ + + Sbjct: 698 PSVLVSELLDFLDRGCTVDGLTPSEAIVFKHKLQAFHPDYFSAGSPIFSYSAQNRDAAQA 757 Query: 752 PHYKRPK---------PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD---FIPHF 799 + Q E+ + + P R + Sbjct: 758 LFAEHQSRQFFPEASTLEGAHAEQEIEIDIEELTRFLTHPCRHLLRALRIDPTGGEDDFL 817 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 ++P T G + + +L++ +++ + L+ + Sbjct: 818 DEEPLATPTGLEAYGPLQDLLRTALDEPAANLEGLL--LAWQLLPPGQAGTDASRKLCSQ 875 Query: 860 FHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI--ESIGIHLTGFAD 903 ++ + I P ++ + I LTG D Sbjct: 876 IRALADQ----------ARAVIGDEKPLRLDLKLPLGRITLTGRID 911 >gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] Length = 1136 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 85/944 (9%), Positives = 223/944 (23%), Gaps = 137/944 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEIT--GK 70 P + + ++ + G L + + + + +A E+ + Sbjct: 218 PGTGKTQTLV-GRVKGLLADGVDPR--------KILLLTFSNKAAGEMAERIARVDTEAA 268 Query: 71 KSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD 129 + I + + L+ L+P + + +EL + + Sbjct: 269 AAIW---IGTFHSFGLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEFPILDLVHYRNLY 325 Query: 130 LYPESPLSLPISPANAIW---LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAAD 186 + + A A + + ED+ + Sbjct: 326 DPTRMIADILTGISRAKDEVVDANTYLALAQAMRDRAVGIEDIATAEKSI---------- 375 Query: 187 FLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPA 241 + + + ++ E+ + +++ + Sbjct: 376 EVARVYATYETLKRQARCIDFGDLVSLPVKLLEENEAILSHIQSTYEHVLVDEYQDVNHS 435 Query: 242 TARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLD 301 + RL+ + G + D + + + + + +Y L Sbjct: 436 SVRLLKALCG--GGENLWVVGDAKQSIYRFRGASSFNMIHFGNED-FPGGLRYRLKMNYR 492 Query: 302 FLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVAL 361 + S + ++ ++R D + P+I ++ Sbjct: 493 SVPEIVSAFSNFALNMTVGDADSGLCAERTSNAQKPELRCVDQGRLQTPSIADAIKEMQG 552 Query: 362 IEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A++ + +L GI + Sbjct: 553 SG--------------------YKYSDQAILCTGNEKLSEIGQQLEILGIPV-------- 584 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 L + + + TL+ + + +R Sbjct: 585 ---------LYLGSVFERP-EIKDWLTLLS--------------LLVDRRAMGLVRIACL 620 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 M L + +++ T + + ++ +++ ++ + Sbjct: 621 PEFTMSLDDVGSVLTHLREDETGSDWKTKIDDFQISDNGRTALNRLVKTLSGFSANDSPW 680 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 N + D T++ + + W + L + S + Sbjct: 681 NVLATV--LLDRTRIAARMATSTHCSVRSQCIATW--QLLNFLRAQPSSGEGVFITRTLD 736 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 I + + D + + + ++ ++ L F + L G+N P N K Sbjct: 737 RIRRLVRLGDDRDLRQLPAAAQSIDAVRLMTIHGAKGLEFPVIHLPGMNADTLPGNPQKQ 796 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAA------HDFEMANGTRHLIYTRSLRENNIPTIA--S 713 A++ + + ++ + N + S Sbjct: 797 VCPPPNGMIAEGRSNAKEQFNLEYKAERECLFYVALSRAEDRLFLYATTRNAAGSTRKLS 856 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 +L R+ + + L P + + S + Sbjct: 857 DFLNRIGSSLVQNNVEPLHA-----------------VIEKPESLPVDWVVSGDLVLSGA 899 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 +I + P + IL++ D N+ EL+ K T + Sbjct: 900 QISLYESCPRRFFYTHILQIGGRRTPTPFLKMHD---AVRNVFQELVNTAPVKITDIEDR 956 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 + + + P + + F E S M + Sbjct: 957 VTQAFTVEGLTEHGYAPEFKSL----AIDMVSYFASIRESHNSEAT-----CAFTMKLGE 1007 Query: 894 IGIHLTGFADRIDLLKSGF---VDITDYKTGDNPKKETAQKLID 934 I + D + + G + KTG KE + Sbjct: 1008 TSITI--QPDDVLVHPDGRKTFRRV---KTGHKRDKEESDLGAA 1046 >gi|221069392|ref|ZP_03545497.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni KF-1] gi|220714415|gb|EED69783.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni KF-1] Length = 1195 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 106/944 (11%), Positives = 251/944 (26%), Gaps = 85/944 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L T++ PL L + V + + + E G + + + Sbjct: 31 LADTVLAWLAAHPL--QALEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVELPA----R 84 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + +L + P S + + + RL+ + L + P + P P Sbjct: 85 FVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGE--PAFAPIASFLRPAEPQRL 142 Query: 146 IWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + LA+ LAD+ D + WE + + L + W + L E Sbjct: 143 LQLAEKLADLFDQYQIYRADWLAAWEQGEDVLRTAGRPDAPVPEGQL-WQPQLWRKVLAE 201 Query: 202 LNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 L+ + AL+ L +++ G + + + +S +A H Sbjct: 202 LDEQERAATRPALLARILGALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQV 261 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIK 306 I +P + + ++ L + Sbjct: 262 LIAVPNPCRFHWADAIDGRELLRQQRRRHADKGGKDLAQIPLAAMHAHAHPLLAAWGRQS 321 Query: 307 REDVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 R+ V++L +V +E ++ + + E+ Sbjct: 322 RDYVRQLDAFDTTGDTAVQWGWPRVDVYDEADASELIDAPLLTQVQQRIRDLVPMSEHPA 381 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLAR 400 I + +A E + L L E ++ ++ A Sbjct: 382 VEIAAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPVAAGRAALAPREVVVMLPSIEEAA 441 Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I DI+ +++ + L LL + + L+ P Sbjct: 442 PAIRAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVP 501 Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYD----------IMDLKSLVLDRI 496 LA P+ + + L+ ++L Sbjct: 502 AVAARVGLAADDLPQLTHWMVGAGIRWGLNHAQRAQLGLAACGDPNSAWFGLRRMLLGYA 561 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + Q+ E + L + + L+ T + ++ Sbjct: 562 SGPALEAAFDEAQAFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTASTTAAAEVWAQ 621 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L + L + + G + + + Sbjct: 622 RFRSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQAGFDALIPLEVAQEAWLQALSEP 681 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLK 675 + + ++ + + R + FD + L G+N+G +P+ + + L + Sbjct: 682 ALNQRF-RAGGVTFCTLMPMRAIPFDVVCLLGMNDGDYPRRATRVDFDLMALPGHQRPGD 740 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKK 733 A + + + + L + + R +N S + +L + Sbjct: 741 RARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYL-RQGWQGEGS 799 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 G C + L + H +P E +F+ ++ A A ++ Sbjct: 800 SGLCASERGDLLLAQRTRQHPLQPFSRRYFEQASGLSTFAREWYGAHEQRAAQALPVVAT 859 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 L H ++ R+ + L++ + I Sbjct: 860 FEPDPEVPLTLARLTEFLRHPA-RSFLRNRLQVRFEQDEELLEDDELFSVDGLTAYGLIQ 918 Query: 854 IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIH 897 + + + +++H + +Q + + + + +G Sbjct: 919 QLQQGVRTQLAHD-AALDVGLQLQRQVQRLGRAGVLPLAGLGRR 961 >gi|295395902|ref|ZP_06806087.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294971175|gb|EFG47065.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 278 Score = 95.8 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 18/187 (9%) Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIKK 822 A+ S S ++ P R + K+ P GTL H ++ +L Sbjct: 1 MAELIALSPSRANDFVSCPLKFRFRSVDKIPEP------PSAAAFKGTLVHAVLEQLFDV 54 Query: 823 RINKNTPEINHLMKQIIDSHFEKEN-------LPPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + T + + + + +EN + ++ E Sbjct: 55 PSRERTLDHATTLIKPTYASLAQENSDVPDLFPEQTDRDRLFSESQALVRAYFALEL--P 112 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 ++E + + G+ L GF DR+D G V + DYKTG PK D Sbjct: 113 QNLEPDAREKFVQTVLPG-GLKLRGFIDRVDRAPGGEVRLVDYKTGKAPKP-QYSGDADF 170 Query: 936 QLSLEAA 942 Q+ A Sbjct: 171 QMRFYAL 177 >gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131] gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131] Length = 723 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 68/686 (9%), Positives = 156/686 (22%), Gaps = 119/686 (17%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A E+R ++ G I + + + + NL + Sbjct: 63 VTFTNKAAAEMRHRINQLIGTSEGGMW---IGTFHGLAHRLLRQHYMDA-NLPQDFQILD 118 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + RLI + K P + + E + + Sbjct: 119 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 160 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222 + A N W + + E + Sbjct: 161 HIEAYGNPVEATWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 212 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I++ + + +A +++ D W ++ Sbjct: 213 YRERFTNILVDEFQDTNNIQYAWIRVLAGETGKVMIV--GDDDQSIYGWRGAQVENIQRF 270 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 ++ G + + + + N+ Sbjct: 271 LNDFP--------------------------GAETIRLEQNYRSTNNILKAANALIANNS 304 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400 D L + ++L A NE +EA + ++ + + A++ +R Sbjct: 305 DRLGKNLWTEGGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAMLYRSNAQSR 364 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 ++ L + + I G S L I ND + +V P G Sbjct: 365 VLEEALIQGAMPYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGDR 424 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 R T ++ ++ L Sbjct: 425 TLDTVR------------------------------QTARDQQLTLWESCEYLLREQVLG 454 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 I + + + ++ + + + EE Sbjct: 455 GRAAAAIERFLELVDALAKETQDMPLHVQADRVINDSGLRAMYEQEKGEKAQARIENLEE 514 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + FS E + A ++ + ++ ++ L Sbjct: 515 LVNATRDFSYQDEDQDLMPLQA-----FLSHAALEAGDGQADVSQDAVQLMTLHSAKGLE 569 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 F + + G+ E F S++ + E+ + M L T Sbjct: 570 FPVVFIVGMEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAM----EKLTIT 616 Query: 701 RSLREN----NIPTIASRWLQRLLVL 722 + + SR++ L Sbjct: 617 YAESRRLYGKEVYHRPSRFIGELPTE 642 >gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 676 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 80/700 (11%), Positives = 176/700 (25%), Gaps = 95/700 (13%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL-LSYNLNPPVSNIQR 108 T +A +E+R +E G+ I + + ++ L Y N + Sbjct: 54 LTFTNKAAREMRDRVVEQVGRGKAKGLTISTFHSLGVRILRQEIEQLGYKKNFSIYPTSD 113 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWED 168 L L R ++ R P + P +WL + + D Sbjct: 114 QLRLVRDMVQGRQL------------PSGGNVDPDRILWLISAAKNELVEANDYTANPRD 161 Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK- 227 + + + + + ++ + I L A+ L + + Sbjct: 162 EYEVLTAEIYPRYQKSLK-----------ACNAIDFDDILLLTIRLFERFADVLDRYRQQ 210 Query: 228 -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I++ + ++ +++ + V+ D W + + Sbjct: 211 FRYIMVDEYQDTNHVQYHMLRLLSSAHHNLCVV--GDDDQSIYGWRGAKPGNILDFGKDF 268 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 P + KL + + N D Sbjct: 269 -----PGARVIKL---------------------EQNYRSTGNILAAANALIVHNQDRHG 302 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIAL---RMSLDENKKKSALITADRNLARRVK 403 K+ +DV D+ +EA+++ + R + A++ +R + Sbjct: 303 KKLWTAGDAGADVVYRCCDDGEDEAMAVVEVIHRERFRHQYQYRDFAILYRTNGQSRAFE 362 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 +L I + G + L + D + + ++ +P G Sbjct: 363 EQLRYENIPYVLIGGQQFFDRKEVKDALAYLKVMANPLDEVNLLRILNYPKRGIGET--- 419 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 L ++ G + +D++ + + + L Sbjct: 420 ---TAERLIQASVVGECSLWDVLHHSAGIEGIGEKAGEAIQNFIALMERYQRRYRQPGQL 476 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 V + L + + + V E R E T Sbjct: 477 VTTTQELFRELQLEEELYRQADDPKKARRRVENLHEVVNAVSSYEER--------EAIAT 528 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 L S K + ++ R K + K + ++ S+ L F Sbjct: 529 LESFLEK---------------VSLLDRDEPPRGSKEEKLKQDAVVLMSLHSSKGLEFPC 573 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSL 703 + L G+ EG P N + L + + A + Sbjct: 574 VFLVGMEEGSLPHNKTIEETQDVSEERRLCYVGITR--ARQQLTLLGAARRKK------- 624 Query: 704 RENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTR 743 P SR+L + + + + Sbjct: 625 YGRLQPREVSRFLSEIPESLIFHEKGDRQAAPPEQQEAMA 664 >gi|154246916|ref|YP_001417874.1| hypothetical protein Xaut_2986 [Xanthobacter autotrophicus Py2] gi|154161001|gb|ABS68217.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 884 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 88/746 (11%), Positives = 188/746 (25%), Gaps = 95/746 (12%) Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA 377 + + I + S + I ++ + A EAI Sbjct: 166 PLLAALTAHIPVQWTAGPRSVPTWLESTGVTISRSPAHTPEIRAVSAATAYHEAIEAMRW 225 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELT---RFGINIDISAGIPLSTTLHSSILTSLL 434 +R L S + A + A L I++ G+ T +L Sbjct: 226 VRSLLASGVSPSEIALATASPADYDDHFLALRADANIDLHFVHGVRTVATREGQAAAALA 285 Query: 435 NAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLD 494 + + + + L R + + VL Sbjct: 286 DIVVRGLSQSRLRRLAA-----------------------LCRDGGPFEALPEGWLRVLP 322 Query: 495 RIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWT 554 A + +RL+ +D + + L Sbjct: 323 TDAPLSTPSAWNRLLARLTPDDWPDGANHAPTLRSAVEILAKGSDAAAEIGEAFLKGRAH 382 Query: 555 KLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLID 614 + L + +++G + + S + A+ ++ ++ Sbjct: 383 AIWRKALLAGPAASIDATLEILKQDDGLEACVSVAWMP--ASALAASPRRFVRLLG---L 437 Query: 615 GETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL 674 + P+ L + + +L+ + L + T + + D + Sbjct: 438 NSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLADRRDFKTILATTAGAVVLSRARRDSDG 497 Query: 675 KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + + A H R+ + + R + R + Sbjct: 498 RLLGRSPLLAGHG-------AETYLRRNATPAHAFSETDRLMARPQEFAADPQAIGAQGC 550 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLD 794 + + T R L RT S S +++L+ +P Sbjct: 551 WRDWRQ-----TEITPHDGLVRADHPLVLAILDRTQSASSLRRLLRNPLTFVWIYAFGWR 605 Query: 795 FIPHFKKDP--DRTDRGTLFHNIITELIKKR------INKNTPEINHLMKQIIDSHF--- 843 + D G L H ++ ++ + +T I + + + Sbjct: 606 EPQSSAEPLVLDALGIGDLVHLVLDRALRDLEIGGGLASADTDMIEIAVARAAQTVAADW 665 Query: 844 --EKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK------------- 888 E+ P I ++ L + + + +P Sbjct: 666 ESERPVPPAVIWGRTLDDARALAGRALSY-GDDALPGARAYGEVPFGGSEPKSEAEAPWD 724 Query: 889 ----MAIESIGIHLTGFADRIDLLKSG-FVDITDYKTGDNPKKE-TAQKLIDPQLSLEAA 942 + I G ++ G+ DR+D+ G + DYKTG P+ + Q L A Sbjct: 725 ATAPVTIPDTGFNIAGYIDRLDISGDGKRALVRDYKTGRTPQGNIRLNGGRELQRCLYAF 784 Query: 943 ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQ 1002 A+KA + + D + + + + L L Sbjct: 785 AVKALLGDDVA-----------ISASLLYPRDPVDLQLDDPEAVLTEITGYLRAARASLA 833 Query: 1003 NGEQPFISHLRLSEKSNIQSEYDHLA 1028 +G + +YD LA Sbjct: 834 SG--------AALPGPDTGGDYDDLA 851 >gi|94496823|ref|ZP_01303398.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58] gi|94423836|gb|EAT08862.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58] Length = 905 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 100/739 (13%), Positives = 202/739 (27%), Gaps = 105/739 (14%) Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI 362 LD + + ++ P D L + +++ Sbjct: 156 LDKLAQHHGIADADDPDFARLVSARREAAAPADRLVGHIQRGLLARTAQAMPLDDSFSVL 215 Query: 363 EADNEREE----AISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + E I LR + + + + A+I D + + SAG Sbjct: 216 SVRDSLGECEAAVAIIQRWLRETPEISPAEIAVIVPDGSQHAAQLAG-------VAQSAG 268 Query: 419 IPLSTTLHSSILT--------SLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + LS S+ + + MA A+L+ P+ + P + Sbjct: 269 LLLSGLPASASARNIGAETIYLFVQCMNAPAPAMARASLLASPIMPW--PRNLGASMARR 326 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 + +D + LV Sbjct: 327 VMQGRGAITSGVDLGVDGRDLVQLLTGGGAK----------------------------- 357 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 N S ++ L D R + + Sbjct: 358 ---------------TNKQFSARLRVLRKLLGPSRPDIERDMAEAKRLITLLLRTLATRN 402 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 +T +A + R G + +L + E+ F+ L++ G N Sbjct: 403 EEDTPDWGALHATAGTYRLERESRGAFYSC------GVSVLHSGETPRRRFEKLVVLGYN 456 Query: 651 EGVWPKNTAKNPFLSRVMQSD------LNLKTAEKYI--GQAAHDFEMANGTRHLIYTRS 702 EG +P +N + L L T + + G +++ + ++ + Sbjct: 457 EGNYPVAAPRNAVFLDSELDEIERACGLALPTRRRMLEDGLGRFVRQLSAASDEIVLLCA 516 Query: 703 LRENNI----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 R+ P + L RL+ W R LD+ + + Sbjct: 517 ERDGYGKALFPASSLALLARLVAEVKDPEDLVTSLGRAGTSVWDRLLDWRVPPEFEPQVR 576 Query: 759 PFPP---------------LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDP 803 P PP E +PR S S +++L+ P A L +P + Sbjct: 577 PQPPVHYDLGRNLLHLRLDEEGRPRPQSPSRLEKLLVSPLAWILEE-LDAAHVPWVPEAL 635 Query: 804 DRTDRGTLFHNIITELIKKRINK-NTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 D RGTL H + L K N I + +++D + Sbjct: 636 DVKLRGTLTHGVFERLFKAGETVCNPASIASRVPELLDECIAIDAPFMTGPAWTMER-DA 694 Query: 863 ISHSFLEHEEKIQSSIEKIFVNI---PAKMAIESIGIHLTGFADRIDLLKSGFVDITDY- 918 + + E + ++++ + + E +G + G AD + L G I D+ Sbjct: 695 MIGDTIRAAEGWAAILKELDAEVVANEFWLEGEVLGHPVHGKADTLLRLGDGQPVIVDHK 754 Query: 919 KTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 K+G +++ + D Q+ L S + + + + + + Sbjct: 755 KSGSGKRRQRMEAGCDLQVELYRRMKVKNGKSGSETPGPEHAVLDAARGRAGVAYNMMND 814 Query: 979 KKYSADELSEKSLKNLIEI 997 + ++ + L Sbjct: 815 SGVLVNGVAGITAPGLETF 833 >gi|167855944|ref|ZP_02478692.1| Exodeoxyribonuclease V gamma chain [Haemophilus parasuis 29755] gi|167852938|gb|EDS24204.1| Exodeoxyribonuclease V gamma chain [Haemophilus parasuis 29755] Length = 1085 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 72/752 (9%), Positives = 200/752 (26%), Gaps = 63/752 (8%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 L+ NP + + V + Q L+ + + G + + Sbjct: 13 QKNLLTAILAKDPNPDPFSQEIVLVQSLGMAQWLQMQIAQEIGVAGNV--QFPYPTSFLW 70 Query: 87 EKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 +++ +L +L S ++ L L R+I + + Sbjct: 71 QQYR---VLFPDLPKENSFERQSMLWRLMRIIPQFLE-----QPAFEALASYLNQGDQLK 122 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------------WLL 183 LA+ +AD+ D +W L + + W Sbjct: 123 QYQLAEKIADLFDQYLVYRPQWLVLWEKGQSQAVVDEIMRAVSFKQKNAKEIATNVAWQS 182 Query: 184 AA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 + + E + + + + I + G + Sbjct: 183 ILWNALVADIKQDSDEAIFNTSHRAYLQQRYFDKLDNLTATEKARLPKRIFVFGISSLPH 242 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAK 298 + ++ ++ H N + + + + S + + Sbjct: 243 SQLAVLKKLSEHCNVHLFFTNPSMEYWANDREDKVLEKLALKDNLSEAELAELFEKQGNP 302 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--NIQKCF 356 LL + ++ L + + P + ++ + ++ Sbjct: 303 LLTVWGKQGKEFLNLLTETGIQDISLYNHFEDENPTLLTQVKKAILYSEHQTTFSLANED 362 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL------ 406 + L ++ E + L + +++AD + + Sbjct: 363 RSIQLHACHSKMREVEVLYNQLLYLFETYPDLSPKDIIVMSADIDSYAPYIKAVFSRYEK 422 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYL 464 R I +S + LL+ I L + + F E+ + Sbjct: 423 ERRYIPFTLSDQKISYINPIIASFLQLLSIKENKFSAEEILDLFDISAIREKYQFNEQKI 482 Query: 465 SRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + ++ V +R + + + S + + + + Sbjct: 483 NTLREWIKSVGIRSGLKIENPEWQNYNSWENGLNRLLLGTSLKAENNGWQNILAFDESYG 542 Query: 523 LVDHILQCITPLVTYKTNKNST-CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L+ + + + T ++ C S+S W + T + + + + + + Sbjct: 543 LISELTGNLAKFIDNLTAWHAFICQPQSLSAWQEQLFTLVAQTYQENDQSIDAILTLQ-- 600 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + + +I ++ +++ T+ + + + L R + F Sbjct: 601 QAIRDVIEQIQQSHFEEAIGIDVMLELFTQQLSEQRSHLNFL-VGKVNFCTLLPMRAIPF 659 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700 + L G++EG +P+ N F ++ E + L + Sbjct: 660 KVVCLLGMDEGEFPRQQTINSFDLMQYAPQKGDRSRRDDDRY--LFLEALLSAQQMLYIS 717 Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730 + ++ + S + +L + Sbjct: 718 YIRQSLTSSQEKLPSVLVTQLFDYLKENLPKA 749 >gi|239932266|ref|ZP_04689219.1| hypothetical protein SghaA1_28841 [Streptomyces ghanaensis ATCC 14672] Length = 317 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 81/272 (29%), Gaps = 32/272 (11%) Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK 821 P + S S + P R I +L + RGTL H+++ L Sbjct: 33 APAVPPASLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHSVLERLFD 87 Query: 822 KRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHE 871 + T + + ++ W ++ + E Sbjct: 88 APAAERTAPRAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLE 147 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQK 931 S +E + + ++S G+ L G DR+D+ +G V I DYKTG P+ + Sbjct: 148 --DPSRLEPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAE 203 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q+ A + + L + L + E+ Sbjct: 204 GALFQMKFYALVVWR-----LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVE 251 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + L+ + ++ R S+ + Sbjct: 252 RKLLALWDAIRTATGTGDWRPRPSK-LCGWCD 282 >gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159] gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159] Length = 1212 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 102/905 (11%), Positives = 248/905 (27%), Gaps = 123/905 (13%) Query: 147 WLAKNLADII---DIIETEEKKW-------EDLHALKN--------EKYGMWWLLAADFL 188 LA ++A +I + + K+ L LK+ ++ + F Sbjct: 304 KLANDIATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFT 363 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATA 243 SK + + ++ NA ++ E L +++ + Sbjct: 364 LDFSKQYLQAKMQENAFEFSDIAHFAIQILEENDAIRQLYIDKYHEVMVDEYQDNNHTQE 423 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS-------- 295 R++ ++ NG D + + N + HP++ Sbjct: 424 RMLELLS---NGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDF--QEHPEHGKLILLKEN 478 Query: 296 LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 + LD L + + + + I + + Sbjct: 479 FRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQVLIYDTKDQ 538 Query: 356 FSDVALIEADNER---EEAISIAIALRMSLDE---NKKKSALITADRNLARRVKLELTRF 409 + +E D+ + E +A + +E + L+ + R + + Sbjct: 539 QNQDLAVEDDSNQISLGEVKLVAKEIIRLHNEEKVQFEDITLLVSSRTRNDGILQTFDDY 598 Query: 410 GINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 GI + G ++ ++ L +I + A+ L++ P+ F + + Sbjct: 599 GIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFAFDEDDLARLALQ 658 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 N + + + + + + I + +++ LS + L L D I Sbjct: 659 NLPDQHKQNLYEKMENARNGQGQQVQLITEALSAKLDAFFETFLSWREFSLLNSLYDLIW 718 Query: 529 QC------ITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLPNLWFEEEG 581 + + + ++ +++ + + L + + Sbjct: 719 KIYNDKFYYDYVGSLPKSEQRQANLYALALRADNFEKTGFKGLSRFIRMIDKILENQNDL 778 Query: 582 KTLSSLFS------KIIETGSCIKA----------------------------NAIEWID 607 + I ++ I++I Sbjct: 779 ADVEVALPKNAVTLMTIHKSKGLEFKYVFILNIDKKFSIQDMTSPLILSRQNGVGIKYIA 838 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 + ++ + + TL + L L ++ K + + Sbjct: 839 DMKEELEEKLLPTVKVSMDTL-PYQLNKRELRLATLSEQMRLLYVAMTRSEKKLYLVGKG 897 Query: 668 MQSDLN-----------LKTAEKYIGQAAHDFEMAN----GTRHLIYTRSLRENNIPTIA 712 Q L L A++ D+ +A L + S + T Sbjct: 898 SQEKLGDQYDGKSENNHLPVADREHYLTFQDWLLAIEAAYAADELHFKTSFITDEDLTED 957 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQ--CYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTY 770 D + ++ LD ++ + P +Q + + Sbjct: 958 KMGSLEAEQAYDADNLKDNRQSDDITRALDMLEAVEKLNQHYKAAIHLPTVRTPSQIKKF 1017 Query: 771 SFSEIKQLINDPYAVYARRILKLD-FIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 ++ + + K + K D T G+ H ++ L + Sbjct: 1018 YEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQDPTALGSSVHELMQRLHLS-EQVSLE 1076 Query: 830 EINHLMKQI-IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI--QSSIEKIFVNIP 886 +I + ++ ++ + +K KI H F + Q++ +K++ P Sbjct: 1077 DILTALAELSVEENVKKAIQ-----------VDKILHFFQTSQLGKLIQANADKVYREAP 1125 Query: 887 AKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAA 942 M + G D +L + + DYKT + ++ Q++L A Sbjct: 1126 FAMLQADPASGEDYVVRGIIDG-YILFDNRIVLFDYKTDKFTNSQAIKERYRGQMTLYAQ 1184 Query: 943 ALKAG 947 AL Sbjct: 1185 ALSQS 1189 >gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] Length = 1158 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 97/914 (10%), Positives = 212/914 (23%), Gaps = 105/914 (11%) Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKD--LYPESPLSLPISPANAI 146 D + + R + + + + + P + + Sbjct: 255 SAGDQERGIAIQHWLDAADRRVRAFEAYKRLFLTAEGSPRKTLMTKKPATAYPQALTSLR 314 Query: 147 WLAKNLADIIDIIETEEKKWE--DLHALKNEKYGMWWLL-AADFLKIASKYWTERLVELN 203 A+ L +I + ++ L L + AA L L Sbjct: 315 KEAERLVEIAERVKAAGVAASTTALLTLAQAMLDAYRERKAARALLDYDDLILAANRLLG 374 Query: 204 ASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH----------- 252 ++ + + G I+I + + P +++ +A Sbjct: 375 GGDGKAPRV----PWVLYKLDGGLDHILIDEAQDTNPDQWAIVAALAGEFFAELEAAATD 430 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAK---LLDFLDIKRED 309 V D + + L L Sbjct: 431 GKIRTVFAVGDEKQSIFSFQRADPAEFARMRRHFQEKAESAERLWAGVDLDISFRSTAAV 490 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI---------QKCFSDVA 360 ++ + V R V S + R ++ VA Sbjct: 491 LETVDAVFALDRARDGVASDASPTIRHRAFRRGQAGLVELWPPVKPAEAVEAPAWAPPVA 550 Query: 361 LIEADNE-REEAISIAIALRMSLD------------ENKKKSALITADRNLARRVKLELT 407 AD+ A IA + +D L+ + L Sbjct: 551 RESADSPSARLASVIAATVHRWIDGGEMLEAKGRPVRPGDVMVLVRRRTAFVTELVRALK 610 Query: 408 RFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRA 467 G+ + + L+ L L +L + + +D + +AT++K PL + Sbjct: 611 DRGVPVAGVDRMVLTEQLAVMDLVALADFLLLPDDDLTLATVLKGPLVGLDEEALFRVAH 670 Query: 468 KNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD 525 L + ++ + + D +A + + L+ Sbjct: 671 GRRGTLWRSLVALAESEPAFRPARRYLGDLLARTDFSAPYELFAGLLNRPCPADVRSGRR 730 Query: 526 HILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLS 585 IL+ + P + ++ + + + + W + Sbjct: 731 AILKRLGP-----------DAQDPLEEFLAVCLAFEK--TEPPSLQNFLAWLAASDAEIK 777 Query: 586 SLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLI 645 + T + + + + + P I Sbjct: 778 RELEQGGGTVRIMTVHGSKGLQAPIVFLPDTLGSPTQSPP-------------------I 818 Query: 646 LGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE 705 L ++ P A+ + + + +Y + Sbjct: 819 LWPDDDCPVPLFAARRGQEDGLCAEARARANRRRDQEYRRLLYVALTRAEDRLYICGHQG 878 Query: 706 NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 P+ + + T + G W + P+ E+ Sbjct: 879 KREPSDDCWYRLVEEAMRETGVPHSFDFTGLSPDGWAGEGWRLVGAQDVVVPRHVETEES 938 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD-----------RGTLFHN 814 I +P L ++P RG L H Sbjct: 939 AATEPPPP----WIAEPAPGEPEPSRPLTPSRPDGEEPAVRSPLGADDGQRFRRGLLVHR 994 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ L + + ++ + + + +H F Sbjct: 995 LLQTLPNLVEEAREAACRRFLARPAHKLTPEQQDAIARETLAVLSHAEFAHLF------- 1047 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK--ETAQKL 932 + V + + + L G DR+ L V I DYKT P + E + Sbjct: 1048 -GPGSRAEVPLVGVVTLGDGSRTLAGRIDRLALAGD-TVWIVDYKTNRPPPRDLEDVPMV 1105 Query: 933 IDPQLSLEAAALKA 946 Q++ AL+A Sbjct: 1106 YRRQMAAYREALRA 1119 >gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 1158 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 83/818 (10%), Positives = 204/818 (24%), Gaps = 94/818 (11%) Query: 183 LAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--------AEHLMKGTKGPIIIAG 234 L A + A + ++I Sbjct: 359 AITRLLPNAVAQLKIIFQTSGFVDFSEVTQRALLALGDSEFPTDLALALDYRIQHLLIDE 418 Query: 235 STGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + + +L+ + +G + D + + Sbjct: 419 FQDTSISQFKLIEKLIAGWEMGDGRSLFAVGDPMQSIYRFREAEVGLFLQARNTGIGHLV 478 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 Q D + P T+ + K+ Sbjct: 479 LQPITLSSNFRSQQGIIDWVNETFTQIMPVRDEIESGAVSYTPSTAIHSKLTEIAVKVYP 538 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENK-KKSALITADRNLARRVKLELTRFG 410 + N+ EA + ++ + + A++ +R+ + + +L G Sbjct: 539 LLDK----------NQIVEARQVIEIIQQTRRDYPTNTIAILVRNRSHLQVIVQKLKESG 588 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNA 470 + L L + A+ L D +A L++ P F + Sbjct: 589 LQFRAVDIELLHYRPVVQDLLIITRALINLADEVAWFALLRAPWCGFLLKDIDALLRSRK 648 Query: 471 LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQC 530 E I+ + D A ++ + Sbjct: 649 EEDC------------------DTTISGTVLWKLIGDPNHWCYLSDDAKAR--IERLRDA 688 Query: 531 ITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSK 590 + P + ++ + ++ C+ V + W + + L Sbjct: 689 LAPCIMHRQRQPLRMTVEAMWQALGG-PGCINPVIKKNRNDISATWSD----AMIFLDYL 743 Query: 591 IIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLN 650 + S + I + + L + V +L I+ +++ L FDT+I+ GL Sbjct: 744 EKQEESGTIRDLIGFEKGLDALYASQDV----GADDSLQIMTIHKAKGLEFDTVIVPGLG 799 Query: 651 EGVWPKNTAKNPFLSRVMQS---DLNLKTAEKYIG------------------------- 682 + ++ + + L E + Sbjct: 800 REQRRNDKQLLKWIEQPHDRIKIESKLVNPELLLAPIQETGLDSDPIYRWMEKIDCKKEQ 859 Query: 683 -QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 +A +A N + + +++ + +G + + Sbjct: 860 NEADRLLYVAVTRTRKFLHLLGHVNLVESEEGKYIPKKPAVGSLLHRLWPVMQLIYFDAA 919 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 + + K + F Y E L + P +V I + + + Sbjct: 920 EKNTMGKNFKREDKDWEGFVNDIDNQGIYRLKEGWVLPDAPKSVAWNEIYETKQVQQDIE 979 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-- 859 ++ N++ +KK + + +++ F++ L ++ + + Sbjct: 980 FSWASEMARHVGNVVHRWLKKIADDELHTWDAARIRMMHGCFKQNLLADGMNGNDKEVEN 1039 Query: 860 -FHKISHSFLEH---EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDI 915 +I + + E ++ + DR G + Sbjct: 1040 AIDRIILALINTISDERGRWILGRHRHAKNELRVVGIVGNKLMNCVIDRTFNDSMGTRWV 1099 Query: 916 TDYKTGDNPKKETAQKLIDP-------QLSLEAAALKA 946 DYKTG N + + ++ QL+ A ++ Sbjct: 1100 IDYKTG-NHEGADIENFMNREQIRYYEQLNYYAKLMRQ 1136 >gi|88811692|ref|ZP_01126946.1| hypothetical protein NB231_04785 [Nitrococcus mobilis Nb-231] gi|88791083|gb|EAR22196.1| hypothetical protein NB231_04785 [Nitrococcus mobilis Nb-231] Length = 875 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 90/774 (11%), Positives = 197/774 (25%), Gaps = 87/774 (11%) Query: 264 CHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGR 323 + ++ + Q+ I + L V + Sbjct: 96 QAMAQLEQAVLSRLPGGRLRPRELLAKALQHIDRASRLLGPITLRGMFELDPVWRPLLLE 155 Query: 324 SMVISKSFLPP--DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISI---AIAL 378 + D+ + K I + V+ + N R EA+ A L Sbjct: 156 LAKVCPVRWEALPDSRPHWACNGARIKWQAISRATPQVSRVSCANPRHEALEALRWAREL 215 Query: 379 RMSLDENKKKSALITADRNLARRVKLELT-RFGINIDISAGIPLSTTLHSSILTSLLNAI 437 + + ++ A+ + G+ + + G P +T +L + Sbjct: 216 LAADEVRPEEIAIAAPATAEWEPHIALIAAEAGLPVAFAGGRPALSTRDGQAAAALAEIL 275 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 K + L+ + + R ++ L + Sbjct: 276 LKGLSRSRVQRLLSLVRGQTP--------LTAQVPPTWRRILPKDAPLLRLDQWRVCLAR 327 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 D L+ + Q L + GN ++ W Sbjct: 328 A--------------VTADNGAVEGLLSVLEQLDRGLDAAEAIGELLLGNRALGIWRTAL 373 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 L + + + + A ++ ++ G Sbjct: 374 SE------GPAWGLDVTLERLRIKDDCEPATAILFGQAADLAACPRPYVWLLGLTSRGWP 427 Query: 618 VKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTA 677 + + +L D + L + + + + + + Sbjct: 428 RASQEDALLPAHVLAPAIL-----DPVSLTERDRRDFQAILHTTAKRLILSWARHDAEGR 482 Query: 678 EKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 E A + + + + + R L R V + + Sbjct: 483 ENGES----ALLRAIDAKEIYRHDARVPEHAVSEPDRVLARPEVFAQQPRARSARACWLN 538 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796 + T R + A R +S + ++ L+ DP R +L + Sbjct: 539 WHRP-----QLTAHDGLLRAEHPAVRRALQRPFSATRLRALVRDPLGFVWRYVLGWEAPL 593 Query: 797 -PHFKKDPDRTDRGTLFHNIITELI--KKRINKNTPEINHLMKQIIDSHFE--------- 844 D G L H ++ + ++ ++Q +D+ Sbjct: 594 VEREPLALDAQAYGNLAHQVLERALVRLEQAGGLAGATAGQVRQAVDAALADSVTEYEVN 653 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAK---------------- 888 + P + + +++ + L +E + + ++ F + Sbjct: 654 EPVPPRVLWRRTQAEIRQLALAALTYE-EPPLAGQRSFAEVAFGGGRAAHEADRPVPWHG 712 Query: 889 ---MAIESIGIHLTGFADRIDLLKSGFV-DITDYKTGDNPKKET---AQKLIDPQLSLEA 941 + I + +TG DR+DL V +TDYKTG P + + Q L A Sbjct: 713 ATAVRIPGTDLAITGRIDRLDLAADQSVARVTDYKTGKPPAPGKTVIVRGGAELQRCLYA 772 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 A++A Q+ A L Y ++ + A L L Sbjct: 773 FAVQALLGPQLVVE--ARLLYPGEPGTLLSMDAPRERLEEIAGYLVAAHEHLLT 824 >gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] Length = 818 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 76/705 (10%), Positives = 184/705 (26%), Gaps = 122/705 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGK---KSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 + + T +A +E+R + G + L S+G Sbjct: 111 SQILAVTFTNKAAREMRDRIGGLIGGTLEGMSWLGTFHSIG------------------- 151 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 V ++R EL L + D L + + + W A+ LA +ID + Sbjct: 152 -VKILRRHAELVGLKSGFTILDDDDQVRLLKQVIEAARLDKDR--WPARQLAGLIDSWKN 208 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + + ++ + A + RL +LNA + +R EH Sbjct: 209 RGLTPDKVPDGESFSFAAGKGAAL------YAAYQARLKDLNACDFGDLLLECIRLFREH 262 Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 I++ + A + +A + D W Sbjct: 263 PDVLADYHRRFRYILVDEYQDTNVAQYLWLRLLAQGCPNVCCV--GDDDQSIYGWRGAEV 320 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + G + + Sbjct: 321 DNILRFEKDFP--------------------------GAKVIRLERNYRSTANILAAASG 354 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITA 394 +N L + S + + ++ EA +I + +K A++ Sbjct: 355 LIAKNAGRLGKTLFTDGSAGSKIGVANFWDDEAEARAIGEDIEQFQRAQEKLNDIAVLVR 414 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + R ++ G+ + G + + I ++ + +V P Sbjct: 415 ASSQMRAIEDRFITLGLPYRVIGGPRFYERQEIKDAIAYFDVIANSSNDLKFERIVNVP- 473 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 L + RI VP + Sbjct: 474 ------------------------------KRGLGDTSIKRIHELARVQGVPL---YQAA 500 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + L + + + L+ + +D +L + + + Sbjct: 501 REIVETDELSNKARKSLGDLMQAFERWRGNLDRIRHTDLAELV------LDESGYTAMWQ 554 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + +T +++ + +++ ++ ++D + + + ++ Sbjct: 555 ADKSPQAQTRLENLKELVRFMHDFE-TLQGFLEHVSLVMDAD----QGSDGDRVSLMTLH 609 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G EG++P + + + E+ A A Sbjct: 610 AAKGLEFGIVFLPGWEEGLFPHQRSLD---------ESGKAGLEEERRLAYVGLTRARRR 660 Query: 695 RHLIYTRSLRENN--IPTIASRWLQRLLVLGGTDFFDNLKKRGQC 737 + + ++ R + + SR++ L + G+ Sbjct: 661 AKISFAQNRRTHGLYQSALPSRFVDELPEATVDVIESEMPYGGRA 705 >gi|291520409|emb|CBK75630.1| hypothetical protein CIY_31320 [Butyrivibrio fibrisolvens 16/4] Length = 389 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 65/231 (28%), Gaps = 27/231 (11%) Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI-- 820 E + + S S + Y + I+KL F+ D G +H I Sbjct: 9 NEDETVSGSVSRFELYNECAYKYFLTYIMKLQEREKFE--LSSMDMGNFYHEAIQRYSDS 66 Query: 821 -----KKRINKNTPEINHLMKQIIDSHFEKEN----LPPHIDIIWRHLFHKISH---SFL 868 KK + E + I+ FE + L + Sbjct: 67 LKSDGKKWKEVSLEEREAYIDTAINQTFESMSKVSTLEDSTQKYIVESMKDTLRHSVDII 126 Query: 869 EHEEKIQSSIEKIFVNIPAKMAI---ESIGIH--LTGFADRIDLL--KSGFVDITDYK-T 920 + E + I ++ + L G DRIDL V I DYK + Sbjct: 127 TTQVSR-GEFEPSIFEEKIEAEIRNYDTNELVAYLKGKVDRIDLTDSDDMAVRIIDYKSS 185 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCR--KVANLFYIRLKQKF 969 G E + QL + + + + + Y + KF Sbjct: 186 GHKLDLEECFYGLSMQLPIYMGVVLEKLKEKYPNATLHPSAMLYYEMANKF 236 >gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] Length = 771 Score = 95.8 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 86/694 (12%), Positives = 198/694 (28%), Gaps = 120/694 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + + + L I + + D N Sbjct: 54 NILAITFTNKAAREMRERAMALNPATADTL--IATFHSMCVRILRRD-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ + + I AKN D++D + E Sbjct: 111 VDPGEQRTLMKRILKNLN-----------LDPKKWNERAILGTISNAKN--DLLDEVAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 NQASDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V N R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANAVINNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A +EREEA+ +A + + E K A++ Sbjct: 305 ----------KLWTQNADGEQIVYYRARDEREEAVFVASTIDNIVREEGKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNVIANTADNISYERIVNEPK 414 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G I D ++ + N + + + ++ Sbjct: 415 RGV--------------------GPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQ 454 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 +LA L L+ ++ + + + T + Sbjct: 455 AVWDLANL-----------LMKFRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQAR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE T++ F E ++ + + L +++ + ++ Sbjct: 504 IENIEEFLTVTKNFDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + ++ + + Sbjct: 564 AAKGLEFPIVFLIGMEEGVFPLSRA--------------AEDQDELEEERRLAYVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 L++ TR+L SR+++ + Sbjct: 610 EQLLFVTNANTRTLFGKTSYNRPSRFIREIDDEL 643 >gi|307825426|ref|ZP_07655645.1| exodeoxyribonuclease V, gamma subunit [Methylobacter tundripaludum SV96] gi|307733601|gb|EFO04459.1| exodeoxyribonuclease V, gamma subunit [Methylobacter tundripaludum SV96] Length = 1077 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 91/870 (10%), Positives = 216/870 (24%), Gaps = 92/870 (10%) Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 + ++ + R E+++ + ++L + L LS Sbjct: 94 IEALLRRLPGMTAETAPGSPRHFLPPWRS-EVSQSVGNRCDRLDGEVF-LPLTQYLSGEN 151 Query: 141 SPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT---- 196 LA+ LA I D + + W + A++ W Sbjct: 152 VALKRYQLAQQLAQIFDQYQ-----------MMRPDMLAAWQKGQLLHQTATERWQQAVW 200 Query: 197 -ERLVELNASSPV----GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 + + L AE I + G P + ++ Sbjct: 201 LQITEQTGNKHRGSLWLDVIAKLNAAEEGAFSAQLPERISVFGLNTMPPLFLSYLEGLSK 260 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 H + L + + + + HP LL L + + + Sbjct: 261 HCQLHLYLLNPAQDFWADLASKRQRANDENFT------GHP------LLSTLGQQGREFQ 308 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + S + ++N + + + +++ + E Sbjct: 309 EMLLEQAQFDLEPESFELSEAQNNLQRLQNGILNNSLDEQPLQKDDSISIHACHSRMREV 368 Query: 372 ISIAIALRMSLDENK----KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 + L L+ + + ++ D + + + + LS Sbjct: 369 EVLKNQLLQGLENDPTLELRDIVVMAPDIQVYEPFISAVFDDIQHAIADRSLRLSNNALD 428 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP----EKYLSRAKNALELVALRGNKNSY 483 + + L + + + L++ P+ GF + L V + Sbjct: 429 AFIRFL-DLSQSRFGWQTVLDLLEQPVVYPGFGLSEVDLELINHWVQDTHVRWGKSAQHK 487 Query: 484 DIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDHILQCITPLVT----Y 537 + L L + + + + + ++ + + L Sbjct: 488 QELGLPELSENTWQATLDRLLMGYAVGSDQDFVADVLPYRDIEGSSALALGGLCDFMQLL 547 Query: 538 KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSC 597 + +W+ + ++ L + S + Sbjct: 548 FKAGKELKQAKPLKNWSTQLYYYADQLLAAAEPV-----ERQQLNELLAELSAELAAVHN 602 Query: 598 IKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 I + ++ + L L R + F + L G+N+G +PK Sbjct: 603 DDVELQVIISWLEGMVAERKSSNGFLRG-QLTFCSMLPMRSIPFKVIALLGMNDGEFPKI 661 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR-----SLRENNIPTIA 712 F ++ + + + + + LI T S + P++ Sbjct: 662 DRNPTFDLLAQHFRKGDRSR-RSDDRYQFLEILLSARQQLIMTYIGQSISHNDAIPPSVV 720 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQC-------------------YLDWTRKLDYTTKQPH 753 L +L GG + + +R+ D Q Sbjct: 721 ISELLEVLQRGGDLITRHPLQPFSRRYFDGTSDVFSFSEADCETARALSRRGDRPVAQAD 780 Query: 754 YKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI--LKLDFIPHFKKDPDRTDRGTL 811 PP + SE+ P + +R L+ + ++ + L Sbjct: 781 LWWQGALPPETEETEVIELSELFSFFRHPQRHFMQRQMDLRFSGMEADAEEREPFSVAKL 840 Query: 812 FHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHE 871 I P ++ + ++ + F+E Sbjct: 841 EGYAIYHEWIHEALNGKPVAVKKLQAQGRWLAGVPG------ELEFDRQQQVINGFVER- 893 Query: 872 EKIQSSIEKIFVNIPAKMAIESIGIHLTGF 901 K ++ E + + I G L G Sbjct: 894 IKAKNLGEPLD---DLPVDISINGYRLVGK 920 >gi|297198514|ref|ZP_06915911.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083] gi|197716174|gb|EDY60208.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083] Length = 283 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 88/273 (32%), Gaps = 32/273 (11%) Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 P + S S + P R I +L RGTL H+++ L Sbjct: 1 MAAAVAPASLSPSRANDFMQCPLLYRFRVIDRLPEK-----PSAAATRGTLVHSVLERLF 55 Query: 821 KKRINKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEH 870 + T + + + ++ W ++ + Sbjct: 56 DAPAGERTAPVAKSLIPGQWDRLRESRPEVVELFADDPDGERLAQWLGEAERLVERWFTL 115 Query: 871 EEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQ 930 E+ + +E + + ++S G+ L G DR+D+ +G V I DYKTG P+ Sbjct: 116 EDPTR--LEPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYA 171 Query: 931 KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKS 990 + Q+ A + + R++ L Y+ D + D E+ Sbjct: 172 EGALFQMKFYALVVWR--LKNVIPRRL-QLVYLGSGDVLTYDPVLAD---------LERV 219 Query: 991 LKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + L+ + ++ Q R ++ + Sbjct: 220 ERKLLALWEAIRQATQSGDWRPRPTK-LCGWCD 251 >gi|238796582|ref|ZP_04640089.1| Exodeoxyribonuclease V gamma chain [Yersinia mollaretii ATCC 43969] gi|238719560|gb|EEQ11369.1| Exodeoxyribonuclease V gamma chain [Yersinia mollaretii ATCC 43969] Length = 1138 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 90/781 (11%), Positives = 195/781 (24%), Gaps = 102/781 (13%) Query: 16 PFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 + + AL+ ++N + V + Q L+ + + + I Sbjct: 11 DLLKALTTALIEREPLDN---------PFQQEVVLVQSPGMAQWLQMQLAQQFTIAANIE 61 Query: 76 PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESP 135 L +L S +L L+ L D L + Sbjct: 62 ---FPLPATFIWDMFTRVLPGIPKESAFSKDAMTWKLMWLLP----DLLDDPVFLPMKRY 114 Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIA 191 LS LA +AD+ D + WE +++ W + Sbjct: 115 LSDDGDKRKIHQLAARVADLFDQYLVYRPEWLEAWERGQLIESLDDAQQWQAKLW---VE 171 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTV 249 +T L + +R + + + I G + P + + + Sbjct: 172 LTRYTRELEQPEW-HRANLYQRFIRTLLDSDVCPAGLPKRVFICGISALPPIYLQALQAL 230 Query: 250 ANHPNGAIVLPGLDCHIPTAIWN----------------------TITEKSTNITSSNTT 287 H + ++ + I + + +S S + Sbjct: 231 GKHIDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRKHYRESIEGKLLRGESLEGESVEVS 290 Query: 288 YSTHP------------QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS------- 328 HP Q LL D L + +++ + Sbjct: 291 LFRHPEQAEQLFNADGEQDLSNPLLASWGRLGRDHMYLLSQVDDIQEVHAFVDIEPDNLL 350 Query: 329 --------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM 380 + T ++ + ++L + + E + L Sbjct: 351 HGIQHDMLELEDHAIMGTTPETLAHSDQKRLLDPADRSLSLHVCHSPQREVEVLQDNLLR 410 Query: 381 SL----DENKKKSALITADRNLARRVKL-----ELTRFGINIDISAGIPLSTTLHSSILT 431 L + + ++ AD + + IS Sbjct: 411 LLAADPELTPRDIIVMVADIDSYTPYIQATLGNATGERYLPFAISDRKASQAHPALQAFI 470 Query: 432 SLLNAIFKLNDFMAIATLVKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK 489 +LL+ + L++ P F E L R + + +R + ++ +L Sbjct: 471 ALLDLPQSRFTSEQVLALLEVPALANKFGITEDGLRRLRQWVGESGIRWGLDDDNVRELS 530 Query: 490 -------SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNK 541 + + + L + + L+ + Sbjct: 531 LPATGQHTWHFGLTRMLLGYAMDSAAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWR 590 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + S+SDW L + L + L E + + I Sbjct: 591 LLLSESRSLSDWLPLCRSLLDTFFESDSETEAVLVLIE--QQWQKVIGYGIAAQYPDLVP 648 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 D + +D E + + + + R + F + L G+N+G++P+ Sbjct: 649 LNLLRDELASRLDNERISQRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGIYPRTLPPL 707 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE--NNIPTIASRWLQR 718 F +M + + E + L + R +N S + Sbjct: 708 GF--DLMAKQVRRGDRSRRDDDRYLFLEALLSAQQQLYISYIGRSIQDNSKRYPSVLVSE 765 Query: 719 L 719 L Sbjct: 766 L 766 >gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] Length = 775 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 86/690 (12%), Positives = 195/690 (28%), Gaps = 120/690 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + +T +I + + + N Sbjct: 60 NILAITFTNKAAREMRER--AMALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 116 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ + I AKN D++D + E Sbjct: 117 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEVAYE 163 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 164 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 208 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 209 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 266 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V R Sbjct: 267 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 310 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 K+ + A++ER+EA+ +A + + E K A++ Sbjct: 311 ----------KLWTQNDDGEQIVYYRANDERDEAVFVASTINNVVREEGKNFKDFAVLYR 360 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I D ++ +V P Sbjct: 361 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPADNISFERVVNEPK 420 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G R A +++ + + + + Sbjct: 421 RGVGPGTLEKIRT----------------------------FAYEQDMSLLDASANIMLS 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 K A V I L + + T ++ D + L Sbjct: 453 PIKGKAAQGVYDFANVILNLRDQLDDLSITEVVEAVLDQSGYLDALSMQQTL---ESQAR 509 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE +++ F + + + + L +++ + ++ Sbjct: 510 IENIEEFMSVTKNFDETNTDETEDETGIDRLGRFLNDLALIADTDDGDVEAAEVTLMTLH 569 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + L + Sbjct: 570 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 615 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719 +++ TR+L SR+L+ + Sbjct: 616 EEILFLTNANTRTLFGKTNYNRPSRFLREI 645 >gi|271969568|ref|YP_003343764.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium roseum DSM 43021] gi|270512743|gb|ACZ91021.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium roseum DSM 43021] Length = 1228 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 93/921 (10%), Positives = 223/921 (24%), Gaps = 94/921 (10%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGK-------KSTILPIIKSLGDVVEEKFTADLLLSYN 98 V T++A EL E + +L ++ + A L+ + Sbjct: 62 QVLGLTFTRKAAGELAIRVRERLNGLVAAEQVPAELLEGEPTIS--TYHAYAARLVTDHA 119 Query: 99 LNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID- 157 L + RL+ A + + + + LA L++ + Sbjct: 120 LREALEPTMRLVSPAVSWQLAVRVVSAYDGPMEQIEW-GPATVTRAVLELAGELSEHLRG 178 Query: 158 --IIETEEKKWEDLHALKNE-----KYGMWW-LLAADFLKIASKYWTERLVELNASSPVG 209 + D + + A + L + + Sbjct: 179 PQDVREVGAWLADRYGELPGSPTLPQRRPLATQRAREQLLPLVEAYDRLKRSREVVDHGD 238 Query: 210 YQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDC 264 R A+H +G +++ + A L+ ++ G V D Sbjct: 239 QMALAARIAAKHAEVGEIERGRFAVVLLDEYQDTSHAQLVLLRSLFG--GGHPVTAVGDP 296 Query: 265 HIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL-------LDFLDIKREDVKRLGNVS 317 W + + + T ++ + +L LD+ L + Sbjct: 297 CQSIYGWRGASAGNLTRFPRDFTTASGELAPVRRLSISFRNGDAVLDVAARVQLPLRMEA 356 Query: 318 NEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN--------IQKCFSDVALIEADNERE 369 E+ ++ T E + + E ER+ Sbjct: 357 REVPVLVPGGNRVERGRVVCAFHETADDEAAWVADGIARVLGGESAPDGMPWGE--GERK 414 Query: 370 EAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 +A A L A++ R+ ++ L GI +++ L T S Sbjct: 415 KAKQSAWGGPQCL--QPHDVAILARKRSQFPALRRALEERGIPVEVVGLGGLLTVPEVSD 472 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 + + L ++ A+ L+ P + G + + R + L Sbjct: 473 IVATLRVLYDPTAGDALVRLLSGPRWRIGPADLKELGERARELNRETREGGSMAS-DPLD 531 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 +V D + + E ++L L L + + Sbjct: 532 QVVADMAEERGSLIDALDEL-PDRPEWQDLFSPLARVRLLAMAQELRILRAHTGQPLPDL 590 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 I + + ++ + + ++ + A Sbjct: 591 IIEIERRLGLDIEVAARGTAIGPFAARADLDAFLDAAARFAGDSEDPTLGAFLAFLKA-- 648 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE------------------ 651 + ++ +S+++ ++ S+ L + +++ G+++ Sbjct: 649 ADEEENGLDAGRVGESNSVKLMTIHASKGLEWPVVVIPGMSQALSKAGTLTVGTMFPARP 708 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKT-----------------AEKYIGQAAHDFEMANGT 694 PK T L ++ D + ++ + + +A Sbjct: 709 TTSPKWTDNPRKLPYPLRGDASDLPRLGGLSKEELAEFDERCRDRDLLEERRLAYVAVTR 768 Query: 695 RHLIYT---RSLRENNIPTIASRWLQRLLVLGGT-DFFDNLKKRGQCYLDWTRKLDYTTK 750 H + P S +L + G + G + Sbjct: 769 AHYLLIASGYRWGSAAKPLEPSDFLVEIRETCGRVSVWAPEAGEGATNPLLAEPAEAGWP 828 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 A + + + DP A + + Sbjct: 829 VTPDGLRYEAVLDGATMVEAALAALAGQGGDPAA------SRPRDGSAQAPGAENAPFSD 882 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEH 870 ++ + PE + E + P + R + + E Sbjct: 883 FSDIPFPDVPPEDEEVPFPEAPEDEDVLFLEVPEFFDDPDDEEATSRARQDVSAEAVHEA 942 Query: 871 EEKIQSSIEKIFVNIPAKMAI 891 + ++ P + Sbjct: 943 VHEAVHEGGRVPGEEPGNGHV 963 Score = 64.6 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 79/743 (10%), Positives = 190/743 (25%), Gaps = 58/743 (7%) Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIK---REDVKRLGN 315 L + + + I P + L +++ + L + Sbjct: 530 LDQVVADMAEERGSLIDALDELPDRPEWQDLFSPLARVRLLAMAQELRILRAHTGQPLPD 589 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + E+ R + + + + F+ + + +A Sbjct: 590 LIIEIERRLGLDIEVAARGTAIGPFAARADLDAFLDAAARFAGDS-----EDPTLGAFLA 644 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 +EN + + ++ + + G+ + + + LT Sbjct: 645 FLKAADEEENGLDAGRVGESNSVKLMTIHASKGLEWPVVVIPGMSQALSKAGT-LTVGTM 703 Query: 436 AIFKLNDFMAIA---TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 + + +PL + + + EL D+++ + L Sbjct: 704 FPARPTTSPKWTDNPRKLPYPL-RGDASDLPRLGGLSKEELAEFDERCRDRDLLEERRLA 762 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + ++ + + E + LV+ C V L Sbjct: 763 YVAVTRAHYLLIASGYRWGSAAKPLEPSDFLVEIRETCGRVSVWAPEAGEGATNPLLAEP 822 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + + A A + Sbjct: 823 AEAGWPVTPDGLRYEAVLDGATMVEAALAALAGQGGDPAASRPRDGSAQAPGAENAPFSD 882 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + E + + + + D+ Sbjct: 883 FSDIPFPDVPPEDEEV--------PFPEAPEDEDVLFLEVPEFFDDPDDEEATSRARQDV 934 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + + + + +A H+ G + P R + G + L Sbjct: 935 SAEAVHEAVHEAVHEGGRVPGEEPGN--GHVLPEGEPGPEHRRVPEEGQEPGNERAGALA 992 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRP---KPFPPLEAQPRTYSFSEIKQLINDPYAVYARR 789 + + + T+ +R + P + S + L +DP + AR+ Sbjct: 993 DLRGWDKERAKAWERDTELLLRERAVNRRRGGGQVELPTHLTVSSLVTLASDPKTL-ARQ 1051 Query: 790 ILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP 849 + + RGT FH + + ++ LP Sbjct: 1052 VRRPVPRKPTPL----ARRGTSFHRWLESRWGQ-----------------QRLLDEMELP 1090 Query: 850 PHIDIIWRHLFH--KISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDL 907 D ++ F E E + E + V +P + I + G D + Sbjct: 1091 GSSDGFEETDIQLDQLRDRFEESEW---AGREPLDVEVPFETMIADR--LVRGRMDAVFE 1145 Query: 908 LKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF-YIRLK 966 L G ++ D+KTG P+ + A+ QL+ A + + +V+ F ++RL Sbjct: 1146 LPDGRYEVVDWKTGQRPEGKKAEAAAAVQLAAYRLAWSH--LADVPLAQVSAAFHFVRLN 1203 Query: 967 QKFKIDCITNDKKKYSADELSEK 989 + + + +++ E Sbjct: 1204 ETVRPVNLLDERGLVRLIESIPA 1226 >gi|119775035|ref|YP_927775.1| exodeoxyribonuclease V subunit gamma [Shewanella amazonensis SB2B] gi|119767535|gb|ABM00106.1| exodeoxyribonuclease V, gamma subunit [Shewanella amazonensis SB2B] Length = 1163 Score = 95.4 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 120/964 (12%), Positives = 254/964 (26%), Gaps = 126/964 (13%) Query: 44 LASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 LA+ I V + LR E G + + L LL Sbjct: 29 LATEQILVQSPGMATWLRLEIAAHNGIAAALS---FPLPSNFIWSLCYALLPGVPKENAF 85 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 + +L L+ K P SP LA +ADI D Sbjct: 86 TKDAMTWKLMALLPRLIEK-----PHFEPLRDYLSSDSPLKLFQLASRVADIFDQYLVYR 140 Query: 164 KKWEDLHALKNEKYGM---------------WWLLAADFLKIASKYWTERLVELNASSPV 208 W L W + +Y + L + + Sbjct: 141 PDWIVTWELGENDLSPTGSPLTQGAALPDNCLWQPLL--WRALVQYNRDELGQSHWHRAN 198 Query: 209 GYQIALMRA-EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIP 267 +Q + + + + G + P T ++ + + ++ Sbjct: 199 LHQALVAALSNPNTDISALPRRLFVFGISSLPPQTLEVLYALGSRIPVTMLSLSPCRQYW 258 Query: 268 TAIWNT-ITEKSTNITSSNTTYSTHPQYSL--------------AKLLDFLDIKREDVKR 312 I ++ + K ++ H + +L +LLD + + Sbjct: 259 GDIVDSKLRAKLALKYKAHKMLPEHWEETLEVGNPLLAANGKMGRELLDLVLSLPPEHFT 318 Query: 313 LGNVSNEMYGRSMVISKSF--------LPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 L + E S ++ + + + + + L Sbjct: 319 LDDSGYETNDDSHLLGRLQNDILDMEVAGAPLCADLARYQSNEGKFLLDEQDNSLVLRSC 378 Query: 365 DNEREEAISIAIALR-----MSLDENKKKSALITADRNLARRVKLEL-----TRFGINID 414 + E ++ L + K ++ D + I Sbjct: 379 HSPLREVETLHDHLLGLLSDRQGRLSAKNIVVMLPDVAAYAPFIDAVFASRRGEHYIPYA 438 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALE 472 I+ + + +LL+ I L++ P F E+ LSR N L Sbjct: 439 IADRGAVEESPLIHGFLTLLDINHSRFGLSEILGLLEIPAVMAKFKLDEEELSRLGNWLS 498 Query: 473 LVALRGNKN--------------SYDIMDLKSLVL-DRIATQKNNTHVPHWQSRLSEEDK 517 +R ++ ++ L+L + + + H + + + Sbjct: 499 EAGVRWGRDAQSREKLGLPAFDKHSWAFGIRRLLLGFSLGDEGDFYHGTLPFAGVEGQQA 558 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 + L+D I + + T +S T L E+++ NL Sbjct: 559 QCVGKLLDFIEHLDEFAARFAAADSLTLKFAELSRLTDTLFAPL-----PEYQEELNLIR 613 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 E T +L S S + + + V + ++ + R Sbjct: 614 ETLCDTQKALQSSASSESSLSDISLEVICQTLGSKLTDARVGQRFLAG-SVNFCTLMPMR 672 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 + F + L G+NEG++P+ F + + + + + L Sbjct: 673 SIPFKVVCLLGMNEGIYPRVQHPVGFDLMAKTPARRGDRSRRLDDRYLFLEALLSAREQL 732 Query: 698 IYTRSLRE--NNIPTIASRWLQRLLVLGGTDF------FDNLKKRGQCYLDWTRKL---- 745 + R ++ + S + LL N + Q + +L Sbjct: 733 YISFIGRSERDDSERLPSMLVSELLDCCELSAYVSQGKLVNRLVKQQPLQPFDHRLYLTN 792 Query: 746 -------------DYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 T + E + + + + + DP + +R L+ Sbjct: 793 QDITASFAAQWCPQETRPPKPFIDAVLDEVDEDEHKVLELASLIRFYRDPARFFCQRRLR 852 Query: 793 LD---FIPHFKK----DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII-DSHFE 844 LD + D D R L ++ ++ + ++ L ++ Sbjct: 853 LDLSHRLDALDDSEPFDVDALGRYQLQDKMLNAALEADEIRQQLAVDTLCDRLAGAGVLP 912 Query: 845 KENLPPHIDIIWRHLFHKISH--SFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFA 902 + ++ I F+ E + QS + + + G L G Sbjct: 913 MAPFDKLLFASYQRDLAPILDRCRFIMGETEGQS--------LRISLVLN-QGHKLVGTI 963 Query: 903 DRID 906 D++ Sbjct: 964 DKVF 967 >gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] Length = 1223 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 107/962 (11%), Positives = 223/962 (23%), Gaps = 106/962 (11%) Query: 81 LGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPI 140 L D + + + L LA L ++ + + E + Sbjct: 249 LEDFFQSHLAHEGQAFAGAKYQENIQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNH 308 Query: 141 SPANAI--WLAKNLADIIDIIETEEKKW--EDLHALKNEK-----YGMWWLLAA------ 185 A A L I E +K E + L A Sbjct: 309 QAFTARVGKNADELKKEIAQAYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPLLDLL 368 Query: 186 -DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSI 239 DF++ S+ + ER V NA + + +++ + Sbjct: 369 RDFVRDFSQAYLERKVAENAFEFGDISHFAIEILENYPEVRRFYQDKYHEVMVDEYQDTN 428 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS---- 295 R++ +A N +V D + + + N + Q Sbjct: 429 HTQERMLELLARENNRFMV---GDIKQSIYRFRQVDPQIFNDK-FKLYQADPSQGKLIIL 484 Query: 296 ---LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 ++ L+ + KRL + + P + + E + + Sbjct: 485 KENFRSHIEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDG 544 Query: 353 QKC---FSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELT 407 + + + E A+ I +R+ E + K L+TA R + E Sbjct: 545 SADSEEEDSDQGLPSISAGEVALVIKEIIRLHNQEGVDFKDITLLTASRTRNDLILAEFD 604 Query: 408 RFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSR 466 R I I G ++ ++ L I + A+ L+K P+ F E Sbjct: 605 RHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMFDFDEDELARLA 664 Query: 467 AKN---ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 + +N+ L ++ +K S L Sbjct: 665 LQASSTKSMENLYEKLRNALADQGLGPQLIHGELRKKLQHFQETLNDWRSYSKTHSLYDL 724 Query: 524 VDHI---LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + I + + ++S + + E Sbjct: 725 IWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEH 784 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 S + + + + ++ + + SS+ IL + + Sbjct: 785 -DLASVPLAAPKNAVQLVTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGI- 842 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH--LI 698 + L + + + + + +A L Sbjct: 843 -KYVADVDLEAQGPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAMTRAETKLY 901 Query: 699 YTRSLRENNIPTIAS--------------------RWLQRLLVLGGTDFFDNLKKRGQCY 738 ++ + WL + + G + + Sbjct: 902 LVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFGKENLAYQTRFVTDQ 961 Query: 739 LDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF----------SEIKQLINDPYAVYAR 788 ++ + +++ + S + I P Sbjct: 962 ELTDEQIGLVEQVDPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPS 1021 Query: 789 RILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL 848 +I K + D D H K + + ++ L Sbjct: 1022 QIKKFYEPVMDSEGLDIMDAPRS-HQTQLTFDLPDFGKKKQVTGAQIGSAVHELMQRIPL 1080 Query: 849 PPHI------DIIWRHLFHKI---------SHSFLEHEEKI--QSSIEKIFVNIPAKM-- 889 I + + +F E Q + P M Sbjct: 1081 DRPITKTSIRQALAQVQVDAAVKKEIDLAKIEAFFATELGQLIQHQSNHLHREAPFAMLK 1140 Query: 890 --AIESIGIHLTGFAD--RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALK 945 + G D + + + DYKT + QL L A AL Sbjct: 1141 QDPASGQDFVVRGILDGYLLF---DDHIVLFDYKTDRYHDPAELVERYRAQLDLYAEALS 1197 Query: 946 AG 947 Sbjct: 1198 RS 1199 >gi|88797061|ref|ZP_01112651.1| exodeoxyribonuclease V, gamma subunit [Reinekea sp. MED297] gi|88779930|gb|EAR11115.1| exodeoxyribonuclease V, gamma subunit [Reinekea sp. MED297] Length = 1080 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 109/904 (12%), Positives = 247/904 (27%), Gaps = 85/904 (9%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTI-----LPIIKSLGDVVEEKFTADLLLS 96 L + + V L E + + + + LP ++ D++ D + Sbjct: 27 EPLTADAVLVQHPGMQHWLSMELAKQSSNQLCMNITYPLP-VRYFWDLIRLILGPDRVPE 85 Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 ++ RL L + I N L + E P L S LA+ LAD+ Sbjct: 86 RSVYTREILAWRLYHLLQQDAITANPLMLEPNRYWQEQPAYLQDS--RRFQLAEQLADLY 143 Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 + W E W W LV+ + P+ R Sbjct: 144 EQYLMYRPDW---IEHWQESPAEHWQALL---------WKA-LVDEDPQHPLALMREASR 190 Query: 217 AEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 H + + G P +S +A + I + L+ W+ + Sbjct: 191 RL-SHPAQPLPSHFFVFGINSLAPIWLDFLSHLARSTDTDIHILYLNP--SAEHWDQLHT 247 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS-------- 328 + + + + Q + D L D L ++ + +S Sbjct: 248 EKQALKTRLRQQQSAQQRASWIDDDALFTDEADNPLLTSLGQQGQVFVRQLSDKADYDAQ 307 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCF------SDVALIEADNEREEAISIAIALRMSL 382 P + ++ + + + + + A + E + L Sbjct: 308 AFSAPEAETQLQTLQRDLLTLHDARSQPHTLDHDGTLMISSAHSAFREVQGLHDWLLHRF 367 Query: 383 DEN----KKKSALITADRNLARRV--------KLELTRFGINIDIS-AGIPLSTT-LHSS 428 + + K ++ + EL+ + S A L + Sbjct: 368 NADPTLTPKDVLVMCPNVEDYAPFVQAVFSRSFAELSEAVPPLPCSIADRNLKDADPTVA 427 Query: 429 ILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYLSRAKNALELVALRGN-----KN 481 LL+ + + + ++ P F L R LE + K Sbjct: 428 AFLELLSLPDTRFEVSRLISWLRIPAIADKFNLSADDLQRITRWLERANIHWGLDGQHKA 487 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + + + D+ L + + L + Sbjct: 488 QWTGQECTDHFTWKQGLDRLLLGFAYGDHDAFVHDELLLHDVEGADALILGRLTSIIEQL 547 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + +L+ + + L + + + L ++ Sbjct: 548 QNIRSDLTRARTPSAWQSYLIDQLQIAMLSTQSAYERSNQSILKAINDFTEFANKANLEQ 607 Query: 602 AIEWIDIITRLIDGETVKPKIEKS----STLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 + ++ +++ P+ S + + + R + F + + GLN+G +P+N Sbjct: 608 TDLPLSVVRYVLENAFASPEQTGSQFMTGQITVCSMVPMRSIPFRVVAILGLNDGDFPRN 667 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRW 715 F Q + + + + + HL + + N S Sbjct: 668 RPPLGFDLMAQQPPRLGDRSRRGDDRYLFLEALLSARDHLYLSYQGFDIRKNEARPPSLV 727 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWT--------RKLDYTTKQPHYKRPKPFP------ 761 L+ L + + + + + H +RP+P Sbjct: 728 LEELFSYLERGYGFERARHIRQLPLQPFSPKNYQGEYPSFNDQWIHLQRPEPEQELLNLL 787 Query: 762 PLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFH----NIIT 817 P + S + + + P + + L L ++ + ++ TL H + T Sbjct: 788 PATDLSPSESIHDWVKFFSHPARAFCEQRLGLYLNNTTTENLEDSEPFTLNHLDRYQLQT 847 Query: 818 ELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 E + +N+ +P++ + S F +L W+ + E + Sbjct: 848 ETVSALLNQESPDVLIQ-QAKAASAFPLSDLALTTAETWQQQAASF-TDLVRAEGADRIE 905 Query: 878 IEKI 881 + Sbjct: 906 YRPV 909 >gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] Length = 921 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 91/877 (10%), Positives = 219/877 (24%), Gaps = 144/877 (16%) Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMK 224 L ++ L F + + + L + G + A E + Sbjct: 153 ADLVRDERIDPAGLGLPF-CECYRAYLDHLQADHYIDFTGMIAHYVEALEEDPALLARER 211 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 G +I+ L+ + V+ D W ++ + Sbjct: 212 GRVRYLIVDEYQDINTLQEELIRLMVGSTGNLSVV--GDDDQCIYHWRGSNYENIISFGT 269 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + + I++ G +S R + ++ LP Sbjct: 270 RYPD-----------VTTVRIQQNFRSTPGIISAAS--RVIDRNELRLPKMMEPWPEGLG 316 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISI-----AIALRMSLDENKKKSALITADRNLA 399 + D+A D+E EE I A+ R ++ ++ L D + Sbjct: 317 QTEE--------GDIATCFFDDEEEEVAGIVGQIQALLGREYINNQGEERTLSYRDMAVL 368 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 R R I+ AGIP + + Sbjct: 369 MRSVRVYARSLISALERAGIP--------FVVRGGRLFERP------------------E 402 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 + E + + L+ L + + + + + + Sbjct: 403 VVIVMQALAFLGEYPYPLRSPVPVHLPLLEEAYLALGYGEAADCALFLKLMTDLKREIDR 462 Query: 520 AVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 + + + + + ++ + ++L + + Sbjct: 463 SESFSLQTLFHRVVQAMGGDRTPFPEVWYYNLGNLSQLVSAFEHQY-----PLITTMEIH 517 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + + K E G + + + +++ Sbjct: 518 RFLEYIQEHAMKQAEEGGAGEELLP----------------------DAVTVTTLHKAKG 555 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L F + + LN + + + V + + F + Sbjct: 556 LQFPVVFIPRLN-TGEFPSDRPDRAVWFVPSPLFDRDRYTTSLEDERRLFYVGITRSEKY 614 Query: 699 YT----RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 R + P S + D F K G+ Sbjct: 615 LFLSGHRQRSGDLPPAEPSTFFSEYPRDHVVDRFPCPAKGGET----------------S 658 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 P S+S ++ + P+ R + D +P + G H+ Sbjct: 659 HTATPISDRSPARIETSWSALRYYAHCPFDYKLRHLYGFDPMPREELG-----FGRAVHS 713 Query: 815 IITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKI 874 ++ + + + + ++D H P + + + + ++ E+ Sbjct: 714 VLAAVHTQIVRGTFD--PAEIPDLVDEHLLLRFAPAGTTERVQGIVARQTLRYV--EQNS 769 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK-T--GDNPKKETAQK 931 + +P A+ + + G D + G V++ D+K T G+ + ++ Sbjct: 770 HDFARIAGIELPFSFAVGNG--VVNGAMDLMLGDGDGGVELRDFKLTEEGEASFRPDVER 827 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 QL + A A ++ +V + ++ Sbjct: 828 ----QLQVYALAARSLG------HEVHKATIYHFDTGSITEVAVG-------PAALAEAQ 870 Query: 992 KNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + ++ +QN E P R + ++ L Sbjct: 871 TAVERMIVGIQNQEFP----RRPAADRCANCDWHCLC 903 >gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200] Length = 722 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 71/687 (10%), Positives = 164/687 (23%), Gaps = 117/687 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 S+ T +A E+R ++ G + I + + + L Sbjct: 56 SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ RLI L K P + + + Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + A+ L + + E + Sbjct: 156 PKHIDAIGFP--------IEQNLLKIYQVYQESCDRAGLVDFAEILLRAHELWLNKPHLL 207 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + + +A A V+ D W ++ + Sbjct: 208 AHYQERFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVENLH 265 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + + + Sbjct: 266 RFLQDFP--------------------------TATTIRLEQNYRSKGNILKASNALIAN 299 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 N + + ++ + ++L A NE +EA I + ++ A++ Sbjct: 300 NPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQ 359 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L G+ I G+ + I ND A +V P G Sbjct: 360 SRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIG 419 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R DL ++K Sbjct: 420 DRTLDILRTTAR--------------QQDLTLWQACL----------------RLLDEKV 449 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 LA + + +VT + + + + + + Sbjct: 450 LAGRAASAVRGFMDLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENL 509 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 EE T + F E + NA ++ + + ++ ++ Sbjct: 510 EELVTAARTFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMTLHSAKG 564 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + + G+ EG++P S + L+ ++ + + L Sbjct: 565 LEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAMEKL 610 Query: 698 IYTRSLRE----NNIPTIASRWLQRLL 720 T + SR+++ + Sbjct: 611 YITYAESRRIYGREDYARPSRFIKEIP 637 >gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] Length = 723 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 71/682 (10%), Positives = 158/682 (23%), Gaps = 111/682 (16%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A E+R ++ G I + + L + NL + Sbjct: 63 VTFTNKAAAEMRHRINQLVGTSEGGMW---IGTFHGLAHRLLRQHYLDA-NLPQDFQILD 118 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + RLI + K P + + E + + Sbjct: 119 SDDQ-YRLIRRLLKAMNLDEKQWPPRQGMWYINGKKD-----------------EGLRPQ 160 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222 + + N W + + E + Sbjct: 161 HIESYGNPVEATWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPHVLQH 212 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I++ + + +A +++ D W ++ Sbjct: 213 YRERFTNILVDEFQDTNSIQYAWIRVLAGDTGKVMIV--GDDDQSIYGWRGAQVENIQRF 270 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 ++ G + + + +T N+ Sbjct: 271 LNDFP--------------------------GAETIRLEQNYRSTNNILKSANTLIANNS 304 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNLAR 400 D L + ++L A NE +EA + ++ + + A++ +R Sbjct: 305 DRLGKNLWTEGGDGEPISLYCAFNELDEARYVVGRIKQWHENGGALQDCAILYRSNAQSR 364 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 ++ L + + I G S L I ND + +V P G Sbjct: 365 VMEEALIQGAMAYRIYGGQRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGER 424 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 R T ++ ++ L Sbjct: 425 TLDTVR------------------------------QTARDQQLTLWESCEYLLREQVLG 454 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 I + + + ++ + + + EE Sbjct: 455 GRAASSIERFLELIEALAKETQEMPLHVQADRVINDSGLRAMYEQEKGEKAQARIENLEE 514 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + FS E + A + V + ++ ++ L Sbjct: 515 LVNATRDFSYQDEDQDLMPLQAFLSHAALESGEGQADVNQ-----DAVQLMTLHSAKGLE 569 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 F + + G+ E F S++ + E+ + M T + Sbjct: 570 FPVVFIVGMEE---------GMFPSQMSMDESGRLEEERRLAYVGITRAMVKLTITYAES 620 Query: 701 RSLRENNIPTIASRWLQRLLVL 722 R L + SR++ L Sbjct: 621 RRLYGKEVYHRPSRFIGELPTE 642 >gi|121998061|ref|YP_001002848.1| exodeoxyribonuclease V subunit gamma [Halorhodospira halophila SL1] gi|121589466|gb|ABM62046.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Halorhodospira halophila SL1] Length = 1164 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 94/868 (10%), Positives = 206/868 (23%), Gaps = 74/868 (8%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG---KKSTILPIIKSLG 82 L VE + PL P L V + Q LR I + Sbjct: 22 LRQVAVEWVQRHPLAP--LEDEVFLVQSNGMAQWLRLALARHPDSEQGGCGIAAAVSMQL 79 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 +L P S + L RL + L D L+ Sbjct: 80 PARFLWSVYRAVLGPEGAPRESPFGKDPLLWRLARLLPA-LRDHPGFEPLRGFLADDPDG 138 Query: 143 ANAIWLAKNLADIIDIIETEEKKW------------EDLHALKNEKYGMWWLLAADFLKI 190 LA +AD+ D + W + ++ W + + Sbjct: 139 RKRYQLAARIADLFDQYQVYRADWLADWSRGEDVCRDARGQARDLDDTQRWQASL--WRA 196 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 E E ++ + + + +I+ G + T + ++ Sbjct: 197 VCAELAEVADEAGQATVHQLYRERIASL-DTAPADLPRRVIVFGISSLPRQTLEALQELS 255 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTIT--------EKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + I ++ L + Sbjct: 256 RFAQVLVFVHNPCAFYWADIIADKDLLRADPGRRPRKAGMPEVLHPEELHNHAHPLLAAW 315 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKS-----------------FLPPDTSDMRNTDIL 345 R+ + L + ++++ L D +R Sbjct: 316 GKQGRDYIGLLDAHEDPQAHPHQALAQAGERIDLFRGPATGSLLGQLQDDILHLRPLAET 375 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 P + + + + A + + E + L + E + ++ D + Sbjct: 376 REAWPAVGREDASLQFHLAHSAQREVEVLHDRLLAAFSEDSSLRPRDVIVMVPDIDAYAP 435 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + I ++ L LL+ + L++ P Sbjct: 436 HIEAVFGRFDAGDARHIPYTVADQGERGLDPLLIALEQLLSLPESRCGLSDLLDLLEAPA 495 Query: 455 AKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 + F E L+ E +R N L ++ + V Sbjct: 496 LRRRFGITEADLATLHGWAEEAGVRWGLNREQRAGLQLPEGLEQNTWRFGLRRMLLGYAV 555 Query: 506 PHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVC 565 ++ E L ++ + LV + + + L Sbjct: 556 GAGEAWSGVEPYPQVGGLDAALVGRLERLVGALEGTWGELREEATPERWGERLQRLLGTY 615 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 D ++ +L E L + + ++ + + Sbjct: 616 FDPSGEVESLTLERLRDALEKWQRDCETGAFAEPLPLNVVREHWLQALEDTRLSQRFLVG 675 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + + + R + F + L G+N+G +P++ F ++ + Sbjct: 676 A-VNFCTLMPMRAIPFRHVCLLGMNDGDYPRSPTPLDFDLMADDYRPGDRSRREDDRYL- 733 Query: 686 HDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLL-VLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N P S + +L L + ++ G T Sbjct: 734 FLEALLSARDRLYISWIGRSVRDNEPRPPSVLVGQLRDHLAAGWRLADEEEAGGLLEALT 793 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 + R +P R + + V L + Sbjct: 794 VEHPLQPFSRQNFRTEPSARHYTYAREWWAAHQGDEAGSGPRVT---TLPERPVEDPPAP 850 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPE 830 G L + +R+ + Sbjct: 851 ITPETLGALLKQPVQTFFNRRLGVRFED 878 >gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] Length = 644 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 54 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + + ++S ++ + + + + Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 443 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 +++ TR+L +R+++ + Sbjct: 607 TRAEQILFLTNVNTRALFGKTSYNRPTRFIREIDDEL 643 >gi|257451429|ref|ZP_05616728.1| hypothetical protein F3_00085 [Fusobacterium sp. 3_1_5R] gi|317058009|ref|ZP_07922494.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313683685|gb|EFS20520.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 876 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 70/433 (16%), Positives = 135/433 (31%), Gaps = 60/433 (13%) Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 L +L I L++ PK T FL+ V + L+ +T E+ I + Sbjct: 473 LRDWHSLMYERKKEKQAIFLDLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYR 532 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG----------TDFFDNLKKRGQC 737 F A ++ + + S +++ L G F +L++ Sbjct: 533 FYQAVYSQKRVVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSS 592 Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI- 796 + WT++ + K + L+ + + + L Y +IL Sbjct: 593 EVSWTKEFEEGKALALKKENE--ELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGRI 650 Query: 797 PHFKKDPDRTDRGTLFHNIITELIKK-----RINKNTPEINHLMKQIIDSHFEKENL--P 849 G + H + + ++ + + + Q ++ F+K++L P Sbjct: 651 EELSFGLSPRLLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIP 710 Query: 850 PHIDIIWR----HLFHKISHSFLEHEEK--IQSSIEKI----FVNIPAKMAIESIGIHLT 899 P + R K + +F ++ EK +I + + + + + Sbjct: 711 PFLKQYLRKIVYPRIIKNTRNFFQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQ 770 Query: 900 GFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVAN 959 G AD + + G +I DYKTG I+ QL A F + Sbjct: 771 GRADLVIEAEQGK-EIIDYKTGKT---------IEDQLDFYA-------FLFYGEEQKVE 813 Query: 960 LFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSN 1019 Y L + KK+ E+ KN E + ++ F Sbjct: 814 GRYYNL---WDGMFSQGKKKEELNSACLEEFFKNFEEDSFYHISEKKAF----------C 860 Query: 1020 IQSEYDHLARVAE 1032 Y + R E Sbjct: 861 TYCPYQKICRREE 873 >gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402] Length = 674 Score = 95.4 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 79/716 (11%), Positives = 186/716 (25%), Gaps = 122/716 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E++ E+TGKK L + + + + + Sbjct: 52 SQILALTFTNKAAKEMQERIKELTGKKLQNL-TVSTFHAFGVKVLRSHIDKIG------- 103 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 WR+ L + + AD +D+ + Sbjct: 104 --------------WRS----NFSIYDETDRNQLIKECGRELKFS---ADALDVYKV-GI 141 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + ++ W D K K + E L NA + ++ EH Sbjct: 142 LFSNIKM-----GRKDWTNEHDSYKALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPEV 196 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + M +A+ + D W + ++ Sbjct: 197 LAEYRERYRYIMVDEFQDTSTQQYNFMKLIADKN----ICVVGDDDQSIYSWRGASFENI 252 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + ++IK E R + + VIS + + Sbjct: 253 RNFEKDFP-------------EMIEIKLEQNYRSTGT--ILAAANGVISHNVNRKVKALW 297 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 D + + +NE EA I+ + ++ Sbjct: 298 SEKDSGRP-----------IEIFIPENEAAEADFISDMILSLKQREGFKYSDFGVLIRAN 346 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +L+R ++ I +S G L S L + +D + + ++ P Sbjct: 347 SLSRPLEESFLEVNIPYRMSGGTSFFQRKEIKDLISYLRVVANPDDDVNLLRIINTPRRG 406 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G A ++R + + P S ED Sbjct: 407 IGKKTLETLSALATENSCSMRTAI------------------RLLLENPPEDMRGKSIED 448 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + L+ + +++ +++ + + + Sbjct: 449 LKEFAELISAHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNI---- 504 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 ++ A+ ++++ IT L +T E+ + I+ S Sbjct: 505 -----ESFLHSMDDWENNPDNWDASLYDYLNRITLLTRDDT----EEEKGEVNIMTIHSS 555 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 + L F + + G +G+ P + + + + Sbjct: 556 KGLEFPVVFIAGAEDGLIPHARSVEENDG-------------DIEEERRLFYVAITRAQQ 602 Query: 697 LIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 ++ S R+ S +L + + + + D ++ Sbjct: 603 KLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEERIADIFSQMKK 658 >gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] Length = 1229 Score = 95.0 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 94/931 (10%), Positives = 236/931 (25%), Gaps = 190/931 (20%) Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAE--HLMKGTKGPIIIAGSTGSIPATARLMSTV 249 + + L ++ V + L + E L + +++ + A R+++ + Sbjct: 345 YRAAKQELEVIDFGDLVTLAVRLADSVPEVGALERARARVVLLDEYQDTSVAQRRMLAGL 404 Query: 250 ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 G V D W + + + ++ + +L Sbjct: 405 FG--GGHPVTAVGDPCQAIYGWRGASVANLDGFPAHFRRCDGEPARVYELTVNQRSGGRL 462 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + V+ + R V P L Sbjct: 463 LSLANTVAATLRARHRVARLRPRPDVAEHGTTVVALHP------------------TWAG 504 Query: 370 EAISIAIALRM---SLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLH 426 E +A LR + + A++ R+ + L G+ +++ L + Sbjct: 505 EVRWVAATLREIVDAGRARPGECAVLVRARSDVPALYAALLAAGLPVEVVGLGGLLSLPE 564 Query: 427 SSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGN------- 479 + + + L + A+ L+ P + G + + Sbjct: 565 VADVIATLEVLDDPTANAALVRLLTGPRVRLGRRDLAALGRAARAAVRVGTDRAAVLDQP 624 Query: 480 -------------------------------------------KNSYDIMDLKSLVLDRI 496 + L SL Sbjct: 625 APGPQASRQPQSSAGHAGHAGHDGGAGYGDGAGHGGHGGHDGARPPGPADPLSSLDPLDE 684 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 A + + + ++ + L+ + + + I ++ Sbjct: 685 AVTGIDPCDVVALADVLDDPGDEVSPAGRARLRILAGELRHLRAHVDEPLLDVIHRVVEV 744 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 T ++ E + + F + GS + + ++ G Sbjct: 745 TGLDVELAASPEAVTAHRRDNIAAFVDVVANFEGLDNDGSV--HSFLAFLRAAREHERGL 802 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF------LSRVMQS 670 + + ++ +S+ L ++ + + L+ V+P T ++ + L ++ Sbjct: 803 D-ATSPSGADAVQLMTVHKSKGLEWEVVAVPNLSRKVFPVTTVRSKWTTVASVLPTPLRG 861 Query: 671 DLNLKTAEK------------------YIGQAAHDFEMANGTRHLIY---TRSLRENNIP 709 D + A + + + + L+ P Sbjct: 862 DADDLPALRGHDKAALADFTAECDAYLEREERRLGYVAFTRAKSLLLGSGHWWGSSQRRP 921 Query: 710 TIASRWLQRLLVLGGT-----DFFDNLKKRGQ--CYLDWTRKLDYTTKQPH--------- 753 S +L L + G+ L LD+ Sbjct: 922 RGPSAFLDELHDHARAGGGRVALWAPPPSEGETNPQLAGMDDLDWPLPYEPVAFARRQAV 981 Query: 754 --------YKRPKPFPPLEAQPRTYSFSEIKQL-----------------------INDP 782 P + + +E + L + P Sbjct: 982 AREVSGYLAALTASRPLPDDDHERMTPAERQMLTELDADVELLLAEARRARRVVREVELP 1041 Query: 783 YAVYARRILKLDF----------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 A+ A ++++L P ++ + RGT FH+ + + ++ + ++ Sbjct: 1042 RALTASQVVRLRADPAGLARDLARPMPRQPVPQARRGTAFHSWVEGMFEQTPLIDLDDLP 1101 Query: 833 HLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIE 892 + +D + + +FL +S V P ++ I Sbjct: 1102 GAADEGVDDADAADAA-------------VLREAFLASPYGQRSPF---AVEAPFELLIG 1145 Query: 893 SIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI 952 + G D + L G ++ D+KTG ++ QL++ A + Sbjct: 1146 GRAV--RGRIDAVYDLGDGRWEVVDWKTGR-------RQADAVQLAVYRLAWARLRGVAL 1196 Query: 953 DCRKVANLFYIRLKQKFKIDCITNDKKKYSA 983 D + ++ ++ + + + A Sbjct: 1197 DAV---DAAFLYVRSGEVVRPKLLSEPELEA 1224 >gi|210623664|ref|ZP_03293973.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275] gi|210153429|gb|EEA84435.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275] Length = 1158 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 70/243 (28%), Gaps = 33/243 (13%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN- 827 T S S +++ + P+A + + + D G+ H +I K Sbjct: 783 TISVSRLEKYASCPFAYFIEY--GMKAKDRKEYLFTAPDVGSFVHKVIENYSKTMHKDGI 840 Query: 828 ----------TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISH---SFLEHEEKI 874 ++ ++ ++I H + + + K Sbjct: 841 TWHEVDDKYIELRVSEMVDELIAKIPGFILESSPKYKYLAHRLKVLITVSIKIIADQIK- 899 Query: 875 QSSIEKIFVNIPA-------KMAIESIG---IHLTGFADRIDLLKSGF----VDITDYKT 920 Q E + + +E + L G DRID + V I DYK Sbjct: 900 QGRFEPDDYEVEFGKKRKYPSIQVEYKENEIVELIGKIDRIDKYINEENKEFVRIVDYKW 959 Query: 921 GDNP-KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDK 978 G N + QL + A L+ G K A + Y R+ D Sbjct: 960 GKNDINLNDVYYGLQLQLLVYMDAILEGGEIPDNIPIKPAAMLYSRMDNPIISRSTLVDD 1019 Query: 979 KKY 981 ++ Sbjct: 1020 EEV 1022 >gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 788 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 68/715 (9%), Positives = 177/715 (24%), Gaps = 123/715 (17%) Query: 47 VTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 V T +A +E+ + + I + + A + + Sbjct: 63 VLAVTFTNKAAKEMMLRLSAMLPINTRGMW---IGTFHGLCNRLLRAHHKEAG-----LP 114 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 + ++L+ + + L + D AK L I + + Sbjct: 115 STFQILDTQDQLSAIKRLLKGLKVDDEKYP--------------AKQLQYFIAHAKERGQ 160 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + +DL G + L + E+ + Sbjct: 161 RAKDLS------VGDDFQAKMAQL---YAAYDEQCQREGVVDFAELLLRSYELLKHSEAI 211 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI---------VLPGLDCHIPTAI 270 + I+I + + ++ H +I V D Sbjct: 212 RTHYQERFRHILIDEFQDTNALQYAWLKLLSGHDASSINVSGMGSSSVFAVGDDDQSIYA 271 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 + ++ + L+ L+ + + +N + + Sbjct: 272 FRGADVENMRLYEK----------QYHPLMVKLEQNYRSHGHILDTANHLIANN------ 315 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKK 388 ++ L + V + EA ++ EA + ++ ++ + + Sbjct: 316 -----------SERLGKNLRTDADHGEPVRIYEAPSDHAEAAWLVDEIKALVNSGIKRTE 364 Query: 389 SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 AL+ +R ++ L GI + G+ + + ND + + Sbjct: 365 VALLYRSNAQSRIIEHALFSAGIPYRVYGGLRFFERAEIKHALAYSRLLENPNDDTSFSR 424 Query: 449 LVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 +V P G + + + L A+ Sbjct: 425 VVNFPTRGIGARSIEVLQDAARAQQC-----------------SLYLAASTLEGKAGAAL 467 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + D + + + + ++ + D + + Sbjct: 468 GGFVRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVENLQELINAATAFI 527 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + G+ ++ + + ++ + Sbjct: 528 AEEGY-------GQDAAAAMLSGENAPGVAEVSP--LAAFLSHASLEAGDNQAQAGQDAV 578 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 ++ ++ L F ++ + GL EG++P + N L + + Sbjct: 579 QLMTVHSAKGLEFTSVFITGLEEGLFPHENSVN--------EQNGL------EEERRLMY 624 Query: 689 EMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 + +Y +R L + SR+L+ L + K R + Sbjct: 625 VAITRAKERLYLSHTQSRMLHGQVRYNMPSRFLEELPSDSLK--WLTPKARDARW 677 >gi|302527193|ref|ZP_07279535.1| RecB family exonuclease [Streptomyces sp. AA4] gi|302436088|gb|EFL07904.1| RecB family exonuclease [Streptomyces sp. AA4] Length = 296 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 25/258 (9%) Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 P + S S P R + +L +P RG Sbjct: 3 DTATVTTPPGADAPARRRPALSPSRASDFKQCPLLYRFRAVDRLPEVPTR-----AQLRG 57 Query: 810 TLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP---------PHIDIIWRHLF 860 TL H ++ L + + + E+ P W Sbjct: 58 TLVHAVLERLFALPAAERVAPRAKELLAPTWTELSAESPEWTELFADGEPGETDKWLASA 117 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 K+ S+ E E+ + +E + ++ + G+ L G+ DR+D+ +G + + DYKT Sbjct: 118 EKLLDSYFELEDPRR--LEPEACELHVEIEL-GSGVLLRGYIDRVDVAPTGEIRVVDYKT 174 Query: 921 GDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKK 979 G P + Q+ A L + L + L + ++ + Sbjct: 175 GAAP--REIGEAKALFQMKFYALVLWR-----LRGVVPRQLKLMYLTDGQSLAYTPDEAE 227 Query: 980 KYSADELSEKSLKNLIEI 997 + E + +++ Sbjct: 228 LVRFERTLEAIWQAILKA 245 >gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] Length = 885 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 77/690 (11%), Positives = 174/690 (25%), Gaps = 75/690 (10%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A E+R I G ++ + I + D L S Sbjct: 71 SQILAITFTNKAAAEMRERLAAIVGPEAERM-WISTFHSACVRILRRDG-DQIGLKSGFS 128 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 I + RLI + L +K P L +L D ++T Sbjct: 129 -IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYK------NSLISWKDQLKTYAA 181 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE-----A 219 + + + + + + RL + NA + + A Sbjct: 182 DY---RPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQA 238 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I + + A L+ ++ G+D T + Sbjct: 239 SDYYRHKFRYIFVDEYQDTNHAQYVLVRELS----------GIDSGEQADPHATGAGRVG 288 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + S Y+ E+ + Sbjct: 289 PSWVTVVGDSDQSIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAK 348 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 + + K + ADN ++EA IA + E A++ Sbjct: 349 NENRKPKKLWTALGKGDP-IIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRAN 407 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R ++ + + + G + L AI D + + ++ P Sbjct: 408 AQSRSLEEAMINANLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVP--- 464 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 +RA+ + + A R +D ++ ++ Sbjct: 465 ---KRGLGARAEGLVAMYADRHGTTFFDGIEH-----------------LDQIEGMTGRT 504 Query: 517 KELAVLLVDHILQCITPLVTY-KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + D + + + + LS S + L L Sbjct: 505 AKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDASRVDNLSQL 564 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 ++ A +++ + D + + + E S + ++ Sbjct: 565 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHT 613 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L + + L G+ +G +P + A + L + + Sbjct: 614 AKGLEYPVVFLTGMEQGTFPHSRAMEDTSELSEERRLAYVGITRAKRRLYVTRAA----- 668 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGT 725 R+ + S++L + Sbjct: 669 ----VRAQWGQANEMMPSQFLDEIPEDLID 694 >gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha proteobacterium EB080_L58F04] Length = 781 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 79/691 (11%), Positives = 185/691 (26%), Gaps = 122/691 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +E++S E+ + +P + + + V Sbjct: 77 EILSVTFTNKAAREMKSRVAELLRQSVEGMPWMGTFHSIC-----------------VKL 119 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D L + L + + W A+ LA IID + Sbjct: 120 LRRHAELVGLKSSFTILDTDDQIRLLKQ--LLVASDVDDKRWPARQLAGIIDQWKNRAWG 177 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 E++ A + + A +F + ERL LNA + +++ Sbjct: 178 PENVPAAEAGAFNH---RATEF----YAAYQERLKALNAVDFGDLLLHVVKIFQTQPDVL 230 Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + A + +A + D W + Sbjct: 231 QQYQQWFKYILVDEYQDTNVAQYLWLRLLAGGHKNICCV--GDDDQSIYGWRGAEVGNIL 288 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + +L + V + GR Sbjct: 289 KFEKDFAG-----AKTVRLEQNYRSTPHILAAASAVISGNTGR----------------- 326 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL-------RMSLDENKKKSALIT 393 L ++ + LI + EEA I + R + + A++ Sbjct: 327 ----LGKELWTDLDEGEKLRLIGHWDAEEEARWIGDEIEALQQGSRGLDKFSPDQMAILV 382 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + R + G+ + G + + + +D +A +V P Sbjct: 383 RASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEVRDAMAYFRLVCSPSDDLAFERIVNTP 442 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 ++ + + G + + L + + + Sbjct: 443 KRGLGDKAQQKIQSMARQEGIALTEGARLLLEAKGLSGKGALELGRLVDGLGRWRKTMQD 502 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + ++ KT + + + ++ + E Sbjct: 503 QSISHQELAEVILDESGYTEMWQNDKTPE--------AAGRLENLKELVKALDQFE---- 550 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 N +++ ++ ++D E + E + I+ Sbjct: 551 ----------------------------NLQGFLEHVSLVMDNE----RDEAGEKVSIMT 578 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F + L G +G++P + + + + E+ A A Sbjct: 579 LHAAKGLEFPAVFLPGWEDGLFPSQRSMD---------ETGQRGLEEERRLAYVGITRAE 629 Query: 693 GTRHLIYTRSLRENN--IPTIASRWLQRLLV 721 + + + R ++ SR++ L Sbjct: 630 RLCTICFAGNRRIFGQWQSSMPSRFIDELPA 660 >gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 852 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 85/724 (11%), Positives = 191/724 (26%), Gaps = 85/724 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E++ ++ G + + + + Sbjct: 84 TAVLTRRIAYLMRERGVAPW---QILAITFTNKAAAEMKERVGQLVGPVAERM-WVSTFH 139 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + L V + + D + L + + Sbjct: 140 SICVRILRNNAQL-------VPGLNTNFTIYD---------GDDARRLLTMIAKDMQLDL 183 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----ASKYWTER 198 A+ LA+ I + E E + + +I + + R Sbjct: 184 KKYS--ARVLANQISNRKNELISPE--------QARAEAERTKNPFEITVASVYEEYQRR 233 Query: 199 LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH- 252 L N+ ++R +H + ++I + A L+S + Sbjct: 234 LRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRG 293 Query: 253 ---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 P+ + D + T ++ +PQ L + Sbjct: 294 ELPPDAPELCVVGDSDQSIYAFRGATIRNIQEFE-----RDYPQAHTILLEQNYRSTQTI 348 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + V + GR E + + ADNE + Sbjct: 349 LNAANAVIAKNEGRR---------------------EKNLWTAHGQGEQIVGYVADNEHD 387 Query: 370 EAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 EA IA + D A++ N +R ++ R GI + G Sbjct: 388 EARYIASEIDSLADKGTAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREI 447 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L + L + +D +++ ++ P G + V+ Sbjct: 448 RDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGK 507 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + L + + D + + + L+ + + Sbjct: 508 VAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPD-LGELLNALLDATGYRAELENS 566 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 D +L L + E + + + G + +++ Sbjct: 567 NDPQDGARL--DNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLE 624 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ + D + + +S + ++ ++ L F + L G +G +P + Sbjct: 625 KVSLVADADQIPDH--ESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELS 682 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 + L + Q RS N + ASR+L + Sbjct: 683 EERRLAYVGITRAREQLY-----LTRA----ILRSSWGNPVTNPASRFLAEVPEDLIDWR 733 Query: 728 FDNL 731 + Sbjct: 734 REEP 737 >gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N] gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N] Length = 1107 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 87/770 (11%), Positives = 196/770 (25%), Gaps = 80/770 (10%) Query: 188 LKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM--------KGTKGPIIIAGSTGSI 239 L +A + E + RA + + +++ + Sbjct: 354 LALAVGQLQKVFAEAGEVDFIEIAQRAQRALGDADDPGELLLKLDASIRHLLVDEFQDTS 413 Query: 240 PATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 L++++ +G + D + + +Y Sbjct: 414 QTQIDLLTSLTSGWQPGDGRTLFLVGDPMQSIYRFRKAEVGLFLQAAERGIGELRLEY-- 471 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 +L D + V+ + ++ + + S + + + Sbjct: 472 LQLTDNFRSQGGVVEWVNRSFADLLPAENDAAAGAIRYSASAAFHPVLPGEAVRFHAAWA 531 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDIS 416 +D + A+++A + A++ R + L + GI Sbjct: 532 TDGPASGDAAAEDIAVALARQALAEHRGSAHPVAILVRARAHLGSLSRRLAQEGIPSRAV 591 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 +PL + L LL A+ D MA ++++ P Sbjct: 592 ELVPLRLRPVVADLVQLLRALSHPADRMAWLSVLRAPWCGLTLESLQRL----------- 640 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + P + + +L + + ++ + Sbjct: 641 ----------------------FGADHQAPVPELLRLALAPDAPAILAEDEHRRLSRVAA 678 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 ++ + G L ++ W + L + + ++L L ++ G Sbjct: 679 LLLDRGNDSGALPLAAWLQRVWQAL-----GGAALYAGVGAASDAESLFQLVERLAPHGG 733 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 A + + + + I+ +S+ L FD++IL GL+ Sbjct: 734 LDIAVLDTAVARLFAA------PDVEGEQGAVEIMTMHKSKGLQFDSVILYGLHRVPRGD 787 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWL 716 F + + + + + A G R + + A+R Sbjct: 788 QAPLVRFENNLGRVLMG--PIKARADAEADPLSRYLGAREARRAAYETDRLLYVAATRAR 845 Query: 717 QRLLVLGGTDFFDNLKKRGQCYLDWTRKL------DYTTKQPHYKRPKPFPPLEAQPRTY 770 +RL ++G F R +L + + P + +P Sbjct: 846 KRLHLIGNLVFDAEKGLRAPAASSLLGRLWNHVQAGEAPEAAPAQAQASGPFWQGEPLRR 905 Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR---TDRGTLFHNIITELIKKRINKN 827 L+ A L H + GTL H + + ++ Sbjct: 906 LDDATVALLAARPGWPAAAAGFLADAEHPAWQLEAGYEAAIGTLAHAWLARIGEEGGQYW 965 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + + +P + + L + A Sbjct: 966 DAARLSEHRPAMRRQLTRAGIPDSQADDAADAVLQTLQATL-----SDGPGIWLLSQSRA 1020 Query: 888 KMAIESIGIHLTGFADRIDL---LKSGFVDITDYKTGDNPKKETAQKLID 934 + I G IDL + G I DYKTG + Sbjct: 1021 RREWPLIDAT--GRVSVIDLALSTEDG-WLIVDYKTGQAQPG-EGAEHFA 1066 >gi|224369744|ref|YP_002603908.1| RecC [Desulfobacterium autotrophicum HRM2] gi|223692461|gb|ACN15744.1| RecC [Desulfobacterium autotrophicum HRM2] Length = 1206 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 86/750 (11%), Positives = 182/750 (24%), Gaps = 66/750 (8%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 V +K Q L+ G I I++ +L + P S R Sbjct: 49 IVQSKGMAQWLKLAVAADDGCG--ISAGIETQLPGTWVWTAYRAILGNDTIPTDSPYDRE 106 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 + R I L D I L LA LAD+ D + W Sbjct: 107 RLVWRFFSILPTLLTDDIFSPLNRF-LENDTDQRRQYQLACRLADLFDQYQVYRADWLKQ 165 Query: 170 HALKNEKYG---MWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 A + ++ W+ ++ W + AS + L +A + Sbjct: 166 WAGEKDQLLTGGGQWVDIPPQHAWQAELWRRLRARVPASLRNIGRSDLHQAFLQKASDTR 225 Query: 227 KGP------IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI--------WN 272 P +I+ G + + V++ + + H I + Sbjct: 226 VRPEILPPRVIVFGISSLPKQVLETLYAVSHLCQVLLFVNNPCRHFWADIIEDRELLRID 285 Query: 273 TITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---- 328 + +++ L + R+ + + R Sbjct: 286 HARHSGKATMPTPLDPVDVYRHANPLLAAWGKQGRDYIGLVYGYDTPETYRKNFAEIDLF 345 Query: 329 ------------KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + D+ + I + + A + + E + Sbjct: 346 RDVIAQDTRGTLLHEIQQAILDLEPSAPDNESRRPIARGDRTITFQVAHSRQREVEILQD 405 Query: 377 ALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAGIPLSTTL 425 L S + + ++T D + I I+ + Sbjct: 406 QLLHSFETLDNLLPRDVVVMTPDIEGYAPHIEAVFGNLSLDDPRFIPFTIADHPGKKSVP 465 Query: 426 HSSILTSLLNAIFKLNDFMAIATLVKHP----LAKFGFPEKYLSRAKNALELVALRGNKN 481 L LL+ + L++ P F + ++ NK+ Sbjct: 466 LVKALERLLHLPDLRMAARDLMDLLEVPAFQRRFGFKETDLPRLFQWIKGAGISWGLNKS 525 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQ-----SRLSEEDKELAVLLVDHILQCITPLVT 536 L + N + + + + E + L H++ + +V Sbjct: 526 QRASFGLPPDLDQTTWAFGLNRMLLGYAVGNNKAWHNIEPYDEIGGLEAHLVGLVAGVVE 585 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE---EEGKTLSSLFSKIIE 593 + L S + L+ + D + + L + + Sbjct: 586 RL---EALWTTLQSSACPERWCLILRTLARDFFEPVDASERLVLNRMDQVLDDWLNACTQ 642 Query: 594 TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGV 653 + D + + V K + + R + F + L G+N+G Sbjct: 643 ADLDQELTLCVVRDYFLEKMAVQGVSQKFLAGM-VNFGTLMPMRAIPFKVVCLLGMNDGA 701 Query: 654 WPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPT 710 +P++ F E R + R+ +N Sbjct: 702 FPRSHPPLDFDLMAEPGMYRPGDRSTREDDRYLFLEALLSARETFYLSHVGRDVRDNGER 761 Query: 711 IASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 S + +L + + Sbjct: 762 TPSVLVGQLRDYIDAGWTLEPGCAEPERPE 791 >gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] Length = 735 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 79/733 (10%), Positives = 183/733 (24%), Gaps = 131/733 (17%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L + + + P L +VT T +A E+R + G +T L + + + Sbjct: 38 VLVHRIAWLIGVEGVAPHSLLAVT---FTNKAAAEMRGRIEALLGHPATGL-WVGTFHGL 93 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 +++ + ARL ++ D + + + Sbjct: 94 AHRL-----------------LRQHWQDARLPQGFQILDSDDQLRMVKR--VLRGLELDE 134 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 A W K I+ + E + E L + W+ + + Sbjct: 135 ARWPPKQAQWYINARKDEGARPEHLPDTGDP-VARQWVR-------IYTTYQQACERAGV 186 Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + + ++ + +++ + + +A V Sbjct: 187 VDFAELMLRSLELLRDNKALLEHYRTRFRHVLVDEFQDTNDIQYAWLRLLAGDSP---VF 243 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D W + +I+ G Sbjct: 244 AVGDDDQSIYGWRGARIE--------------------------NIQHFQQDYPGTQVVR 277 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + + N L ++ K + V L A NE+EEA IA + Sbjct: 278 LEQNYRSSANILNAANALIRHNAGRLGKELWTEDKEGAPVRLYTALNEQEEARFIAETIA 337 Query: 380 MSLDENK--KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 +DE ++ A++ +R ++ + + G+ + L Sbjct: 338 RHVDEGGLYRECAVLYRSNAQSRVLEETFIARRMPYRVYGGLRFFERQEIRDALAYLRLA 397 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 +D A +V P + K+L R A Sbjct: 398 GNGDDDAAFLRVVNQP-----------------------------PRGIGEKTLEGLRQA 428 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 Q +T + + + D L + V ++D + Sbjct: 429 AQAADTSLLQAATHAVDAD-----ALPGRARNAVAGFVQLVRTLQQELPRQPLADQVEQA 483 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA---------NAIEWIDI 608 + Q R+ E G+ +++ + Sbjct: 484 IERAQL------REHYKKEKGERGEARLENLDELVGAARAFDMESTAESEEGEGNRLTEF 537 Query: 609 ITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVM 668 + + ++ ++ L F + L G+ EG++P + Sbjct: 538 LAHAALEAGEGAADPHEDAVQMMTLHSAKGLEFPLVFLTGMEEGLFPNARS--------- 588 Query: 669 QSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 L+ + + + + L + + R + D Sbjct: 589 -----LEEPGRLEEERRLAYVGMTRAEKELYLIHAETRRLYGRESYNVASRFINEIPEDA 643 Query: 728 FDNLKKRGQCYLD 740 + L+ + + Sbjct: 644 LEVLRPQASPFGA 656 >gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] Length = 885 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 76/695 (10%), Positives = 179/695 (25%), Gaps = 85/695 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A E+R + G ++ + I + D L S Sbjct: 71 SQILAITFTNKAAAEMRERLAALVGPEAERM-WISTFHSACVRILRRDG-DQIGLKSGFS 128 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 I + RLI + L +K P L +L D ++T Sbjct: 129 -IYDTADSERLIKLIGADLNIDLKRYTPRMILGKISDYK------NSLISWKDQLKTYAA 181 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRA-----EA 219 + + + + + + RL + NA + + +A Sbjct: 182 DY---RPGQRGYQLGRFDNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQA 238 Query: 220 EHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I + + A L+ ++ G+D T + Sbjct: 239 SDYYRHKFRYIFVDEYQDTNHAQYVLVRELS----------GIDSGEQADPHATGAGRVG 288 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + S Y+ E+ + Sbjct: 289 PSWVTVVGDSDQSIYAFRGADIRNIQDFEEDFPNAKTIMLEQNYRSTQTILDAANAVIAK 348 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADR 396 + + K + ADN ++EA IA + E A++ Sbjct: 349 NENRKPKKLWTALGKGDP-IIGYAADNAQQEAGYIASEITRLHTEEGIAYSDMAIMYRAN 407 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +R ++ + + + G + L AI D + + ++ P Sbjct: 408 AQSRSLEETMINANLPYQLVGGTKFYERREVKDAIAYLQAIVNPADDVNMRRILNVP--- 464 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 +RA+ + + A R +D ++ ++ Sbjct: 465 ---KRGLGARAEGLVAMYADRHGTTFFDGIEH-----------------LDQIEGMTGRT 504 Query: 517 KELAVLLVDHILQCITPLVTY-KTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + D + + + + LS S + L L Sbjct: 505 AKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDASRVDNLSQL 564 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 ++ A +++ + D + + + E S + ++ Sbjct: 565 QSVAAEFEQNTP-----------DATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHT 613 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L + + L G+ +G +P + A ++ + + + + Sbjct: 614 AKGLEYPVVFLTGMEQGTFPHSRA--------------MEDTSELSEERRLAYVGITRAK 659 Query: 696 HLIY-----TRSLRENNIPTIASRWLQRLLVLGGT 725 +Y R+ + S++L + Sbjct: 660 RRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLID 694 >gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1] gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32] gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1] gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32] Length = 722 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 70/687 (10%), Positives = 164/687 (23%), Gaps = 117/687 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 S+ T +A E+R ++ G + I + + + L Sbjct: 56 SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ RLI L K P + + + Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + A+ L + + E + Sbjct: 156 PKHIDAIGFP--------IEQNLLKIYQVYQESCDRAGLVDFAEILLRAHELWLNKPHLL 207 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + + +A A V+ D W ++ + Sbjct: 208 AHYQERFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVENLH 265 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + + + + Sbjct: 266 RFLQDFP--------------------------TATTIRLEQNYRSKGNILKASNALIAN 299 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 N + + ++ + ++L A NE +EA I + ++ A++ Sbjct: 300 NPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRSNAQ 359 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L G+ I G+ + I ND A +V P G Sbjct: 360 SRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIG 419 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R +L ++K Sbjct: 420 DRTLDILRTTAR--------------QQELTLWQACL----------------RLLDEKV 449 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 LA + + +VT + + + + + + Sbjct: 450 LAGRAASAVRGFMDLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENL 509 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 EE T + F E + NA ++ + + ++ ++ Sbjct: 510 EELVTAARTFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMTLHSAKG 564 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-L 697 L F + + G+ EG++P S + L+ ++ + + L Sbjct: 565 LEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAMEKL 610 Query: 698 IYTRSLRE----NNIPTIASRWLQRLL 720 T + SR+++ + Sbjct: 611 YITYAESRRIYGREDYARPSRFIKEIP 637 >gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] Length = 729 Score = 95.0 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 92/764 (12%), Positives = 209/764 (27%), Gaps = 124/764 (16%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 L + ++ T +A QE++ + G+ + L + + Sbjct: 38 RVLTYRVAALIQEGVRPENILAVTFTNKAAQEMKERLEGLVGEAARGL-WVSTFHSACVR 96 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 + L + + L +++K+L + P S A I Sbjct: 97 ILRREAHLLGYRPN--------FVIYDTDDQ-QAALKEVLKELDLDDKKYPPRSLAQVIS 147 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSP 207 +AK + ++T E L + + E+L ELNA Sbjct: 148 MAK------NDLKT----PERF--LDGAATFREQQQGQ-----IYRRYQEKLRELNAMDF 190 Query: 208 VGYQIALM-----RAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGL 262 + + + I++ + A L+ +A + V+ Sbjct: 191 DDLIMQTVFLWQQNPLVLRYYQQRWQHILVDEYQDTNHAQYILVRLLAGKGDNLCVV--G 248 Query: 263 DCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYG 322 D W + + P+ + L + R ++ V G Sbjct: 249 DPDQGIYGWRGADIGNILAFEEDF-----PRARVILLEENYRSTRPILQAANAVIQHNEG 303 Query: 323 RSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL 382 R E ++ ++ + L A +ER+E IA + Sbjct: 304 RR---------------------EKRLWTRRREGELLHLYRATDERDEGRFIAGEVYRRH 342 Query: 383 DENKKK---SALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFK 439 + + A++ +R ++ + G+ +I G+ + + L I Sbjct: 343 QQEGRPFSDFAVLYRTHAQSRALEEAFIQAGVPYEIVGGLKFYQRKEIKDILAYLRVIAN 402 Query: 440 LNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ 499 +D +++ ++ P G A E L R+ + Sbjct: 403 PDDSLSLLRIINVPRRGIGEATLARLEAAATSEG-----------------ESLYRVLER 445 Query: 500 KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVT 559 + + R + + + L + + ++ + T Sbjct: 446 VDTIPGIPARGR-------------QALRELVEMLDNLRQQQEKITVTDLVATILQETGY 492 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + L +E +T++ + + S + Sbjct: 493 QAELEAERTPEAQARLENLKEFQTVTRSYDQGAPESSLGD---------FLTQVALVAES 543 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 ++ + ++ ++ L F + L GL EGV+P + L + Sbjct: 544 DTYSGNAAVALMTMHTAKGLEFPVVFLAGLEEGVFPHFRS--------------LDDPAE 589 Query: 680 YIGQAAHDFEMANGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKR 734 + + R ++Y TR+L + + SR+L + L+ Sbjct: 590 MEEERRLCYVGMTRAREVLYLTHAWTRNLYGSTMSNPPSRFLDEIPADLIQGEGTGLRSG 649 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 L T + + ++P P A + + Sbjct: 650 ---VLSRTSEERDDRGRSTRRQPAPARSTRASWQVGDKVQHDAW 690 >gi|297619071|ref|YP_003707176.1| UvrD/REP helicase [Methanococcus voltae A3] gi|297378048|gb|ADI36203.1| UvrD/REP helicase [Methanococcus voltae A3] Length = 1085 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 30/270 (11%) Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 PPL +S S+I + P + +L + G H I L Sbjct: 838 PPLVNPDMAFSPSKIVDYDSCPLMFKYKNVLSIPTPKK-----SYFSVGNTVHKIFEILG 892 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL-FHKISHSFLEHEEKIQSSIE 879 K+IN + + + ++ + ++++ + + + + + E E+ + Sbjct: 893 DKKIN-DERITIEMAQNMLLENLKEQDFDSKTEYDEQMTNCLNMLNYWFEFEKNNVD--K 949 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 I V + + + G DRID + DYKTG + + L + QL + Sbjct: 950 IISVEEKFSINL--CNHTINGIIDRIDKTTDDNYIVLDYKTGKTALSKN-KLLNNIQLII 1006 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADEL-SEKSLKNLIEIV 998 A A+K + + I++ I +E E+ +N+ + Sbjct: 1007 YAIAVKEK-YGKYP---------IQIGH---IYPAIAKSVILDIEESKIEEIKQNIESYI 1053 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + N + F S + +Y ++ Sbjct: 1054 DKIMNED--FEVVKNPS--NCHFCDYKNIC 1079 >gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] Length = 802 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 85/729 (11%), Positives = 201/729 (27%), Gaps = 106/729 (14%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R ++P + T +A E+R ++ G ++ + + + Sbjct: 60 TAVLTRRIAYLLRARGMHP---GQILAITFTNKAAAEMRERVAQLIGPRANTM-WVSTFH 115 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L + + + R L I+K++ ++ P Sbjct: 116 STCVRILRAQAGL-------LPGMNSNFSIYDADDS-RRLLTMIVKEMGLDAKKFAPR-- 165 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 LA I ++ E ED A + + + A+ + RL Sbjct: 166 --------ALATQISNLKNELIGPEDAAADAAKTGEPFAVTVAE----VFGTYQARLRSA 213 Query: 203 NASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA- 256 NA + + +++ + A L+ + Sbjct: 214 NAFDFDDLIGETVGLLQSHPNVAQYYRRRFRHVLVDEYQDTNHAQYILVRELVGLEEDED 273 Query: 257 -----IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 + D + T ++ + + L+ + Sbjct: 274 GVTPSELCVVGDADQSIYAFRGATIRNIEEFERDFPNAETIL---------LEQNYRSTQ 324 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + + +N + R+ + L D D + ADNE +EA Sbjct: 325 TILSAANAVISRNAGRREKKLWTDQGDGAL-----------------ITGYVADNEHDEA 367 Query: 372 ISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSI 429 + + D A+ AR ++ R G+ + G+ Sbjct: 368 SFVVSEIDALSDNGIKYSDVAVFYRTNTAARVLEEVFIRHGVPYKVVGGVRFYERKEVRD 427 Query: 430 LTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK 489 L + L AI ND +++ +V P G + G + Sbjct: 428 LVAYLRAIDNPNDTVSLQRIVNTPRRGIGDRAQACLTVHAENHGTNFGGAIADAVEGGVA 487 Query: 490 SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLS 549 L + + R++++D+ L+D +++ + + + G Sbjct: 488 MLNPRSRNAIATFSGLMTELRRIADDDESDIGDLLDAVVEKTGYRAELEGSSDPQDGARL 547 Query: 550 ISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDII 609 + L + + + G+ + +++ + Sbjct: 548 --------------------DNIEELISVAREFSAQDFTDVVADEGAPEPGSLAAFLERV 587 Query: 610 TRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQ 669 + + D + V + + + ++ ++ L F + + G +G +P A Sbjct: 588 SLVADADQV--PDDDAGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRA---------- 635 Query: 670 SDLNLKTAEKYIGQAAHDFEMANGTRHLIYT-----RSLRENNIPTIASRWLQRLLVLGG 724 L + + + R +Y RS + + SR+L + Sbjct: 636 ----LGDENELAEERRLAYVGITRARERLYVSRAMIRSTWGDPMQNPESRFLAEIPQHLI 691 Query: 725 TDFFDNLKK 733 ++ Sbjct: 692 DWRRLEPQR 700 >gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] Length = 1213 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244 + + R +L + ++ + +++ + A + Sbjct: 320 EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 +S + + V D + W + S + + SL L Sbjct: 380 YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363 + + + I+ + ++ +N + + + D+ + Sbjct: 432 TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484 Query: 364 AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400 A + +EA ++A L + ++ +A++ +++ Sbjct: 485 APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + EL+R GI + A ++ + LN + + + Sbjct: 545 PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 ++ LE ++ + + +S++ + Sbjct: 594 LNRFRLSREDLEAISKAAGRTVLPFQE-------------------VMKSQIGASVSQPG 634 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + + + I L + + + L E R + EE Sbjct: 635 RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 S+ +G +EW+D+ + + + ++ ++ L Sbjct: 686 FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745 Query: 641 FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682 +D + + GL+EG +P N + L ++ L K + Sbjct: 746 WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805 Query: 683 QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725 + + + + +TR+ N + + LL Sbjct: 806 EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865 Query: 726 DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 F +G DW ++ +P P + S+ ++ Sbjct: 866 LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925 Query: 777 QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 P + + P + + G+L + R + Sbjct: 926 PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985 Query: 828 TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 + + + + D ++ P + I H+++ Sbjct: 986 SSMLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045 Query: 870 ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904 E + + + + + G + D Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105 Query: 905 IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 + +S G I D+KT +P ++ + QL + + ++D + + Y+ Sbjct: 1106 VFQERSCGTTWIVDWKTASHPNPPQYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 LK+ + + ++ + + + L +++ + F+S L Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213 >gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 1126 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 92/922 (9%), Positives = 227/922 (24%), Gaps = 136/922 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIE--ITGK 70 P + R ++ A + G L + + + + +A E+ Sbjct: 218 PGTGKTRTLV-ARVEGLLADGVDPR--------RILVLTFSNKAASEMGERIARKHREAA 268 Query: 71 KSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL 130 + + + + L + R + ++++D Sbjct: 269 AAMW---VGTFHAFGLD-LVRRFFTELGLPRDPRMMDRT------------EAVELLEDR 312 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI 190 +P L + + + + I + E E+ L A + Sbjct: 313 FPSFNLRHYRNIYDPTQIITEILTAISRAKDEVVDAEEYARLAGSMGSSEAAERAAEVAQ 372 Query: 191 ASKYWTERLVELNASSPVGYQIALMRAEA-----EHLMKGTKGPIIIAGSTGSIPATARL 245 + + N + +R ++ +I+ ++ RL Sbjct: 373 VYGAYERLKRDANCVDFGDLVLLPVRLLETSPDIRSHIQSLYDHVIVDEYQDVNRSSTRL 432 Query: 246 MSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDI 305 ++ + P+G + D + + S + Sbjct: 433 LAALK--PDGHNLWVVGDAKQSIYRFRGASPFSMMRFGTQD------------------- 471 Query: 306 KREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA--LIE 363 G + ++ T ++ + + + + L+ Sbjct: 472 ------FPGAKRERLGQNYRSSAEIVNAFSTFAATMRLGAGSRALHADRGPNGIHPKLLC 525 Query: 364 ADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 ++A+++A ++++ E ++ A++ + EL GI + L Sbjct: 526 VRRAEQQAVALADSIQVLRSEGLTYREQAVLCTGNEKLSTLARELEVLGIPVLFLG--SL 583 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 L SLL+ + M + L P K F + + L L + Sbjct: 584 FERPEVKDLLSLLSVLIDR-RAMGLVRLGCWPEFKMQFADV--AATLEFLRLTEVSPGAW 640 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + + + + H + S L LL+DH ++ Sbjct: 641 LQSVDGIPKITDQGARALTSLGVALHGFDQSSSPWTVLVTLLLDHTRMA----ARLGSSV 696 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 N + +I+ W + L L Sbjct: 697 NIADRSRAIAIW-QFLNFLRVQPSGQGLPITRLLDRVRRLVRLGDDRDL----------- 744 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN---- 657 + + + +L ++ L F + G+N P+ Sbjct: 745 --------------RQLPNAAQGLDAVRLLTIHGAKGLEFSATHIPGVNADTIPRVSSAP 790 Query: 658 --TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS--LRENNIPTIAS 713 + S L + Q + + + + + + N S Sbjct: 791 ICPPPEGMIQGATASSLETYREGQVEEQECLFYVALSRAKGHLLFYAPMEKSNGHNRPLS 850 Query: 714 RWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFS 773 +L R+ + P + P + Sbjct: 851 SFLDRIGTTLIRTVVVPQRS-----------------IPEAAEEAALQIVFDGPMRFGAP 893 Query: 774 EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINH 833 +I + P + IL++ D I+ LI ++ Sbjct: 894 QIALYESCPRRFFYTHILQVGGRRTSTAFMKMHD---AVRMILATLIIDGKPAGPEDLED 950 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIES 893 ++ + + E + L + F+ +E + +P + ++ Sbjct: 951 RIEAALKTV---ELADHGHRNEFSALALTMLRYFVSTQEGCAN-------EVPVAINLKF 1000 Query: 894 IGIHLTGFADRIDLLKSGFVDI 915 + AD I + + Sbjct: 1001 GDEEIVVRADDILIRPDQSRVV 1022 >gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 1132 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 75/786 (9%), Positives = 172/786 (21%), Gaps = 70/786 (8%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG--------TKGPIIIA 233 LK+A+ + + A E I++ Sbjct: 364 QALLAVLKLATAQLLLVFQGAGEVDFIEIGMQARHALGEPQAPTDLALSLDYRIQHILMD 423 Query: 234 GSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTY-- 288 + L+ + +G D + + N Sbjct: 424 EFQDTSVTQFELLERLVAGWQPDDGRTFFGVGDPMQSIYRFREAEVGLFLQAARNGIGDI 483 Query: 289 STHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENK 348 P + +V +M + + P T N + + Sbjct: 484 PLEPLVLSVNFRSQAGVVNWVNAVFPDVMPTQPE-AMTGAVPYTPSQTIRAANAEHAVSV 542 Query: 349 IPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTR 408 P + A A + + ++ ++ A++ N + L R Sbjct: 543 HPRRAANEAAEAEEVAASIQTTLETV---------PQHERIAVLARAANHLVPIVQRLRR 593 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 GI P+ S L +L A+ + D +A +++ P + Sbjct: 594 DGIPFQAVDIDPVIEKPVVSDLLALTRALARPADRLAWLAVLRAPWCGLSAGDLCTVA-- 651 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 G ++ + + V + L + + V+ Sbjct: 652 -----QECSGPLWPALEGAVQEQTVSASGQHRLQRVVGSLRPVLEQREYIAFYKGVEMAW 706 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + + ++ L+++ P E + Sbjct: 707 HALGGPACLTDADEQ--------EAARVFFELLRHLSTGGRTPSPEEVEEGLANLRARPE 758 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + ++ T +I G L Sbjct: 759 PDGAARVQLMTIHKAKGLEFETVIIPGLGRGTPPVDRRLLMWQEVPRDTGGE-------- 810 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 + + + L+ + + + + R ++ + Sbjct: 811 --DLLLAPVPPTGGKPEATYRYIQQLEKTKTRLEEGRVLYVAVTRARERLHLFGAAKQRA 868 Query: 709 PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR 768 + LL L D + D + +R + A P Sbjct: 869 DGTLAPVSGSLLELLWPHVKDRFEACQGAAEDQEGVQPEAQQGYWLRRLPANWEVPAVPV 928 Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S +++ GT+ H + + ++ Sbjct: 929 RVGGSARG----------VEGQSRVERPEFDWAGRTVRRIGTVIHRWLMRVAQETEQHWH 978 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQ--SSIEKIFVNIP 886 ++ E + + L +S + P Sbjct: 979 ERSLARCREAFRRDLVGEGVVGPELSAAVDRVEQALAQILSDRRGQWLLASHSEARCEYP 1038 Query: 887 AKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP-------QLSL 939 A++ + DR + G I DYK G + +D QL Sbjct: 1039 LTGALDGELHSV--VLDRTFVDGQGQRWIVDYKAGR-HSGSDLEAFLDREQERYREQLET 1095 Query: 940 EAAALK 945 A + Sbjct: 1096 YARLVA 1101 >gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 72/591 (12%), Positives = 154/591 (26%), Gaps = 72/591 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R G +P + + + + Sbjct: 68 SEILCVTFTNKAAREMRERVGRHIGDAVEGMPWLGTFHAIGAKM---------------- 111 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + PD L L W A+ LA +ID + Sbjct: 112 -LRRHAELVGLQSNFTIIDPDDQLRLLKT--LIAEADLDEKRWPARQLAGLIDRWKNRGL 168 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH--- 221 DL A++NE Y K + RL LNA + ++ +H Sbjct: 169 NPGDLDAVENEAYANGRGAQL------YKTYQARLQSLNACDFGDLLLHMLNIFRQHSDV 222 Query: 222 --LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I++ + + +A H V+ D W + Sbjct: 223 LEQYQNRFKYILVDEYQDTNQVQYLWLRLLAQHRKNICVV--GDDDQSIYSWRGAEVANI 280 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + P + KL + + E R Sbjct: 281 LKFEKDF-----PGAKVIKLEQNYRSTPHILGAASGLIGENSQR---------------- 319 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLD--ENKKKSALITADRN 397 L ++ V +I + EEA + + + A++ + Sbjct: 320 -----LGKELWTETDTGEKVRVIGVWDGPEEARRVGEEIESLERGGTGLDEIAILVRAQY 374 Query: 398 LARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP---- 453 R + + G+ I G + L I + D +A + P Sbjct: 375 QTREFEDRFIQIGMAYRIVGGFRFYERAEIRDALAYLRVIAQPADDLAFERIYNQPKRGL 434 Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 + + A + + + + + Q ++ Sbjct: 435 GAKTLEKMYQHARRTGMPLAAASLDLADSDELPARARGTIGGLMRQFLQWREQADSLAPA 494 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 ++ EE A+L + + L + ++ D+ + V + + Sbjct: 495 ELLRQVLEESGYQAMLENERTPEAKGRLENLSELARAMEDYETLGDFLE-HVALVMDNDA 553 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + K L ++ + + + ++ E Sbjct: 554 NAEDAKVTIMTIHAAKGLEFDHLFLVGWEEGVFPSQRSLDEGGLASLEEER 604 >gi|158340761|ref|YP_001521929.1| hypothetical protein AM1_D0120 [Acaryochloris marina MBIC11017] gi|158311002|gb|ABW32615.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 262 Score = 95.0 bits (234), Expect = 7e-17, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 70/233 (30%), Gaps = 24/233 (10%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 T S +++ P A R L F G H + ++ K Sbjct: 3 YTLSATKLITYQQCPKAYNFRYERGLSSPSAF----GSPAFGIALHKTLADIYKDWNYDY 58 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVN--I 885 H + P ++ +I+ + I V I Sbjct: 59 PLPSLDWFAMCWQHHTGELK--PAQIHEGWMALQLYYEKYVAPLPQIR---KPIGVEGKI 113 Query: 886 PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDN--PKKETAQKLIDPQLSLEAAA 943 A + +I +TG DR+D +G +++ DYKT P ID QL L Sbjct: 114 KASFQVNNIEFSITGRYDRLDYTDNG-LELIDYKTSKTIGPS-----DGIDLQLGLYFLI 167 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIE 996 L+ +L Y+R QK D + ++ EL L Sbjct: 168 LEQIYPE---ALDTLSLIYLRQGQKVSFDVTPDHHQQVR--ELIGDIAVKLRA 215 >gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] Length = 1213 Score = 94.6 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 95/951 (9%), Positives = 253/951 (26%), Gaps = 183/951 (19%) Query: 190 IASKYWTERLVELNASSPVGYQIALMRAE-----AEHLMKGTKGPIIIAGSTGSIPATAR 244 + + R +L + ++ + +++ + A + Sbjct: 320 EVIRAFNTRKAQLRFADFSDQTREVVELLKKVANISQSYQQRYQLVLLDEFQDTSVAQLK 379 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 +S + + V D + W + S + + SL L Sbjct: 380 YLSALFRN---HAVTAVGDPNQAIYAWRGASAASIEEFPKYFSDNPSKVASL-----TLR 431 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV-ALIE 363 + + + I+ + ++ +N + + + D+ + Sbjct: 432 TSWRN-------DAAILNVANCIASEIAEQNRTEGKNENFIMPDLSLRPGASPDLGRVYG 484 Query: 364 AD--NEREEAISIAIALRMSLDENKK---------------------KSALITADRNLAR 400 A + +EA ++A L + ++ +A++ +++ Sbjct: 485 APFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQAAGRVGQPPSLPTAAVLCRKKSIML 544 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + EL+R GI + A ++ + LN + + + Sbjct: 545 PILRELSRRGIPFQLQARESALLDPGVVLVRAALNVVVNPQNSGS-----------LLLL 593 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 ++ LE ++ + + +S++ + Sbjct: 594 LNRFRLSREDLEAISKAAGRTVLPFQE-------------------VMKSQIGASVSQPG 634 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + + + I L + + + L E R + EE Sbjct: 635 RERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGL---------DIEQRIPGTPYQEEA 685 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 S+ +G +EW+D+ + + + ++ ++ L Sbjct: 686 FTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQVITVHAAKGLE 745 Query: 641 FDTLILGGLNEGVWPKNTAKNPF-----LSRVMQ-------------SDLNLKTAEKYIG 682 +D + + GL+EG +P N + L ++ L K + Sbjct: 746 WDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQLGEKDRSRKFL 805 Query: 683 QAAHDFEMANGTRH------LIYTRSLRE-----------NNIPTIASRWLQRLLVLGGT 725 + + + + +TR+ N + + LL Sbjct: 806 EQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAFFRVLLGEDAK 865 Query: 726 DFFDNLKKRG---------QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 F +G DW ++ +P P + S+ ++ Sbjct: 866 LFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGLWQAPSWLDLP 925 Query: 777 QLINDPYAVY---------ARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 P + + P + + G+L + R + Sbjct: 926 PESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWKLYNAPRPRLD 985 Query: 828 TPEINHL--------MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---------- 869 + + + + D ++ P + I H+++ Sbjct: 986 SSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIAQQLGQPTLDI 1045 Query: 870 ----------------------HEEKIQSSIEKIF-VNIPAKMAIESI--GIHLTGFADR 904 E + + + + + G + D Sbjct: 1046 PDGSEATLDADSRLKLDCYRQTWENLQFLKGKAVMDIEHSGSLVVGEGTEGFEVPLRIDA 1105 Query: 905 IDLLKS-GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 + +S G I D+KT +P ++ + QL + + ++D + + Y+ Sbjct: 1106 VFQERSCGTTWIVDWKTASHPHPPQYERYLH-QLGIYRL-YWLQTHPELDSQDI-QCAYV 1162 Query: 964 RLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRL 1014 LK+ + + ++ + + + L +++ + F+S L Sbjct: 1163 YLKEGETEHQVLTLESILEHLKMPDYTPEYLYKLLKRGETEATEFLSQKNL 1213 >gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44] gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44] Length = 827 Score = 94.6 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 74/708 (10%), Positives = 177/708 (25%), Gaps = 107/708 (15%) Query: 50 YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A +E+ + + + I + + A + L + Sbjct: 80 VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQAA-KLPQAFQILD 135 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +L+ + + + D + K L I + E + Sbjct: 136 TQDQLSAIKRLCKQFNVDDERFPP------------------KQLMYFIAGCKEEGMRPG 177 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222 D+ A + + + E+ + + H Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDVHLRHH 228 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276 + I++ + + + +A + + A V+ D + Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + L+ + + +N + Sbjct: 289 GNMADFIREFDVKNQI---------KLEQNYRSYSNILDCANALI--------------- 324 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393 N++ L + Q V + EA ++ EA + ++ + + ++ A++ Sbjct: 325 --SHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVRNDGFTRQEIAVLY 382 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R ++ L I + G+ + L + +D + +V P Sbjct: 383 RSNAQSRVIESALFNSKIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G + + +L + L R Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGTAGTKLQGFVAQIDVLREQTQGRTLREI 502 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E E L++H + + S + + LDE + P Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561 Query: 574 NL--------------WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L +E K + + ++ + + ++ + L G+ Sbjct: 562 QLSQSPVSQGLDPNQPQLDEALKAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + ++ S+ L FD + +GG+ E F D E+ Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670 Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723 + A + + L + S + SR+ L Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714 >gi|221632334|ref|YP_002521555.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159] gi|221156871|gb|ACM05998.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159] Length = 771 Score = 94.6 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 79/739 (10%), Positives = 191/739 (25%), Gaps = 106/739 (14%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRL 109 T +A +E+R + G +S L + + D L P + Sbjct: 99 VTFTNKAAREIRERLGGLLGTESAQLVQAGTFHSLCVRILRRDGYR-IGLEPAFTIYDEE 157 Query: 110 LELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDL 169 +LA L+ L + P L + + ++ DL Sbjct: 158 DQLA-LVKQALRDLGLDPQRFSPRMLLGR-----------------LSRAKNDQHSPSDL 199 Query: 170 HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----K 224 ++ +W A + + + L A + + E+ + Sbjct: 200 QSMAQS----YWDEVAA---RVYERYAQYLQRAQAVDFDDLLLRTVELFTEYPDVLAHYQ 252 Query: 225 GTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSS 284 + + + +L+ +A+ V+ D W ++ Sbjct: 253 DRWRYLQVDEYQDTNRLQYQLVRQLASGHRNLCVV--GDPDQSIYSWRQADIRNILEFQR 310 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDI 344 + +T + L ++ ++ + + + L + Sbjct: 311 DFPDAT---------VIRLGRNYRSTPQIVAAADAVIRVNRQRIERPLWTENPPGPP--- 358 Query: 345 LENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADRNLARR 401 + L+ +E++EA + L + + + A++ +R Sbjct: 359 --------------IRLLACWDEQQEAEMVVSEIDRLVRTGNARYRDIAVLYRINAQSRS 404 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 V+ L R I + G+ +LL + D++++ ++ G E Sbjct: 405 VEEALVRRQIPYQVIGGVRFYERKEIKDALALLRVLVNPRDWLSLRRVLSETAFGRGIGE 464 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 K L L Q + V EE LA Sbjct: 465 KTLL------------------------QLEQWGQRQQCSPADVLLLLVEEREEAPALAA 500 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 V + + LV + + + + + + + + Sbjct: 501 ATVRRLRELGGELVRLRAAMVEHPASQLFDLALERSGLAARYRDASDPTERERWENLVQL 560 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 +++ + + + + + +L ++ L F Sbjct: 561 RSVLERYDTVPAAEG--------LPLFLEEAALVAAIDEAEMSGDQVTLLTLHAAKGLEF 612 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + L G+ EG+ P A + L + + + +R Sbjct: 613 PVVFLIGVEEGLLPHARALESEAELEEERRLFYVGITRAKERLYLSYCS---------SR 663 Query: 702 SLRENNIPTIASRWLQRLL---VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + + S +L L V G+ + + + ++ + R Sbjct: 664 NRFGLRERCLPSHFLDDLPPDVVEAGSRASERVPRVAPPAGGHAGPVESSAPVVPRLRAG 723 Query: 759 PFPPLEAQPRTYSFSEIKQ 777 A + + +Q Sbjct: 724 QRVFHPAFGDGFVVAVREQ 742 >gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] Length = 637 Score = 94.6 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 78/686 (11%), Positives = 178/686 (25%), Gaps = 117/686 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A +EL+ + + LP++ + + Sbjct: 52 EILAVTFTNKAAKELKERIMHQCPQAQYDLPMVCTFHSLG-------------------- 91 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETEE 163 + L R + + + II D L + + L ++ I + Sbjct: 92 ---VFILRRSLHLLNRENNFIIYDQGDAEKLIKRCLQQHNLKQNLVDSMQYHISQAKNRL 148 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR-----AE 218 EDL + Y + K + ++L E NA ++ AE Sbjct: 149 LSPEDL---DPQDYVDP-------VVTIYKEYQKKLEETNALDFDDLLFLTVKLFKTCAE 198 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 A + ++I + A + +++ + D W + Sbjct: 199 ARQEYQELWKALLIDEYQDTNHAQYTMAQIISDQHRN--IFAVGDPDQSIYSWRGANIHN 256 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 +PQ + +L + Sbjct: 257 ILNFE-----QDYPQAQVLRL---------------------EENYRSYGNILNAANALI 290 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395 N L+ ++ +++ + L +REEA +A + +++ + + Sbjct: 291 QNNASRLKKELRSVRGPGEKIRLFLGKTDREEADFVAEEILKIHRKSQIALRNFCIFYRT 350 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R + L R I +I G+ + + L ND +A + P Sbjct: 351 NFQSRTFEDALLRRRIPYEILGGLSFYKRREIQDILAFLRMFSAKNDLIAFERTLNLPKR 410 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G E + Sbjct: 411 GLGPAAISSLNHYALTE--------------------------------GLSLLEACKKT 438 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 K V L + + ++ +S++ + Q + + + Sbjct: 439 LKTQDVKLSKKQQEGLKDYLSIFQQMEVAYETQPLSEFMISLLRITQYLNILKEDPDSFE 498 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + L S + + A + L + + S + ++ Sbjct: 499 DRKNNLDELISKTFEWEQQNPEGSLEA-----FLDDLALKSSTDEEDLISDRVNLMTLHN 553 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 + L F + GL E ++P +K + + + L + A D + Sbjct: 554 GKGLEFRIAFVVGLEENLFPHANSKGNYENLEEERRLCYVGITR-----AQDLLYLTAAQ 608 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLV 721 + ++R SR+L+ + Sbjct: 609 TRLLWGTVRVMK----PSRFLKEIPR 630 >gi|313113915|ref|ZP_07799473.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255] gi|310623754|gb|EFQ07151.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255] Length = 892 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 84/761 (11%), Positives = 198/761 (26%), Gaps = 120/761 (15%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLL--ASVTIYVPTKRAIQELR 61 + P + + + A++ GT ++ L + +V T +A EL+ Sbjct: 71 QTPR----PATEDDIKALRNAIMTGTAAPSWLDGMLRQNAVRSWNVMAITFTNKAAGELK 126 Query: 62 SEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 + G + GD V + ++R E + Sbjct: 127 ERLRRMLGGEE---------GDEVFASTFHSACVRI--------LRRWAEEIGYPRSFTI 169 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW 181 D + + L + + I+ + + + L + + Sbjct: 170 YDTDDSQRVMKAVYKDLNVDDKFLP-----IKAAINQMSRWK---DQLVSPEQALASPAK 221 Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGST 236 + +RL E A ++ AEH + +++ Sbjct: 222 DTKGALTARIYAAYEKRLKEAGAFDFDDLIYQTVQLLAEHKDVRDFYQNKYRYLLVDEYQ 281 Query: 237 GSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSL 296 + A RL+S + V+ D + T ++ Sbjct: 282 DTSVAQFRLVSLLTGPEKNICVV--GDDDQSIYRFRGATIENILNFERIYP--------- 330 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCF 356 G + + S + NT+ + Sbjct: 331 -----------------GTKTIRLEQNYRSTSNILNAANCVIQHNTERKGKTLWTSNGEG 373 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINID 414 V + A+NE++EA IA + L E + A++ + ++ TR GI Sbjct: 374 DKVQVYTAENEQDEASHIADVIGQHLKEGGHLADHAILYRMNAQSAPIESYFTRAGIPHK 433 Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELV 474 I G + + S ++ + D + + ++ P Sbjct: 434 IVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEP--------------------- 472 Query: 475 ALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL 534 K +++ + + + + Q + + L Sbjct: 473 ---ARKIGATTVEVIADLATQEGVSMLDIIGHADQYAKLSRAVMPLLKFWQIYQRLQDSL 529 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIET 594 T ++ + +D +LT + L + + Sbjct: 530 ETRTLDEFA-------ADVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQ 582 Query: 595 GSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVW 654 +A + + + + E + + ++ ++ L F + L G+ EGV+ Sbjct: 583 -HGEEATLEGY---LEDIALISDIDSYNESADQVVLMTIHSAKGLEFPYVFLIGMEEGVF 638 Query: 655 PKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLIYTRSLRE----NNIP 709 P +K + + + + L + S+ Sbjct: 639 PSEMSKY--------------SEADLEEERRLAYVGITRAKKELYISNSVSRMLYGRTQR 684 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 SR+L+ + + + ++ + W T Sbjct: 685 NEPSRFLREIEPEYIEETRSPVLEQRSRFGGWGDSYRDTVP 725 >gi|302392153|ref|YP_003827973.1| hypothetical protein Acear_1398 [Acetohalobium arabaticum DSM 5501] gi|302204230|gb|ADL12908.1| conserved hypothetical protein [Acetohalobium arabaticum DSM 5501] Length = 870 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 69/544 (12%), Positives = 158/544 (29%), Gaps = 62/544 (11%) Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL-QNVCLDEHRKLPNLWFEEEGKT 583 + I + P G S+S + + + + + ++ N++F + Sbjct: 355 ELIDDQLAPFRAVVEEIEQISGLRSLSGFCSYLEGLVVEKLADNRYKNDLNIFFGSLAEL 414 Query: 584 LSSLFSKIIETGSCIKANAIE--WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 S I+++ + N + ++ I+ L + + + + L S +N Sbjct: 415 NSITEMGIVDSWNQYFTNNAQGLFLLILRYLRFKRVETTVDDSGAEVEVKDLLTSSFVNR 474 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 + +++ + EG+ P+ L+ ++ + LKT ++ + + F + Sbjct: 475 NRIMMLNVVEGIVPRAEEAAFLLTESQRTQVGLKTYQQQRLEMKYKFFRHLLSSEQAVIF 534 Query: 702 SLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------QP 752 SL+ S +++ L L ++ G Y + + + Sbjct: 535 SLKNEEQNIAVSSFIEELQ-LKYNLPTKEVEITGADYPEIIKSIFDCDSCLLGVDEKLAD 593 Query: 753 HYKRPKPFPPLEAQPRTYSFS--EIKQLIN-DPYAVYARRILKLD-FIPHFKKDPDRTDR 808 Y + + S + + L Y Y ++ L+ F ++ Sbjct: 594 KYSDRLEIEAEDFANQRLSLTYYKYSTLKRYCSYRFYLEQLAGLEAEQMEFSRELSPKVL 653 Query: 809 GTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID----------IIWRH 858 G L H + E+I + ++ K++I ++ + + Sbjct: 654 GILVHRVFEEMINRVGDRIKDGGYKPEKEVIKEVITEKVASFDLKIPGYYEEYYEEVIFK 713 Query: 859 LFHKISHSFLEHEEKIQSS--------IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 + FL M E + I L G D + Sbjct: 714 AVQESVEYFLTVLPDRVKGNIKDIVTEWMPAQDESRVFMESEEVEIQLNGRIDLVIET-D 772 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFK 970 I DYKTG QL L + + + Sbjct: 773 ESKHIIDYKTGR---------GNTEQLDLYSLLYNQ-------ELEAGEMI------DKS 810 Query: 971 IDCITNDKKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARV 1030 I + + K E+ L ++ + + + + +Y + +V Sbjct: 811 IYNVMDQKFDRGYRGSEERFRDKLRNLLEEAIIDSKEYQGQ---FKSRCKRCDYIDICKV 867 Query: 1031 AEWR 1034 WR Sbjct: 868 G-WR 870 >gi|296394679|ref|YP_003659563.1| RecB family exonuclease [Segniliparus rotundus DSM 44985] gi|296181826|gb|ADG98732.1| RecB family exonuclease [Segniliparus rotundus DSM 44985] Length = 294 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 15/218 (6%) Query: 765 AQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRI 824 + S S P R I ++ P RGTL H + EL+ Sbjct: 11 GRRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTL-----AMVRGTLVHAALEELLALPA 65 Query: 825 NKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS---FLE--HEEKIQSSIE 879 T + + E H + H ++ L + + + Sbjct: 66 ESRTLDAAAELIAPSWQRVSGEMPEDHRLDLDEHGLSQLFEQSKTLLAMYFALEDPARVT 125 Query: 880 KIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSL 939 + ++ +E + L GF DR+D L G + + DYKTG P K + Q+ Sbjct: 126 PSACELRVEVDLEP-DVPLRGFVDRVDELADGELRVVDYKTGRAPGGPYEAKAL-FQMKF 183 Query: 940 EAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 A AL + +++ L Y+ + + Sbjct: 184 YALALWK--LRGVVPQEL-RLMYLGSGDTLTYEPDPGE 218 >gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 841 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 85/724 (11%), Positives = 191/724 (26%), Gaps = 85/724 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + R + P + T +A E++ ++ G + + + + Sbjct: 73 TAVLTRRIAYLMRERGVAPW---QILAITFTNKAAAEMKERVGQLVGPVAERM-WVSTFH 128 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + L V + + D + L + + Sbjct: 129 SICVRILRNNAQL-------VPGLNTNFTIYD---------GDDARRLLTMIAKDMQLDL 172 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKI----ASKYWTER 198 A+ LA+ I + E E + + +I + + R Sbjct: 173 KKYS--ARVLANQISNRKNELISPE--------QARAEAERTKNPFEITVASVYEEYQRR 222 Query: 199 LVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANH- 252 L N+ ++R +H + ++I + A L+S + Sbjct: 223 LRAANSVDFDDLIGEVVRIFNQHPQVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGRG 282 Query: 253 ---PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKRED 309 P+ + D + T ++ +PQ L + Sbjct: 283 ELPPDAPELCVVGDSDQSIYAFRGATIRNIQEFE-----RDYPQAHTILLEQNYRSTQTI 337 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNERE 369 + V + GR E + + ADNE + Sbjct: 338 LNAANAVIAKNEGRR---------------------EKNLWTAHGQGEQIVGYVADNEHD 376 Query: 370 EAISIAIALRMSLD--ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 EA IA + D A++ N +R ++ R GI + G Sbjct: 377 EARYIASEIDSLADKGTAYSDIAVMYRTNNASRALEDIFVRSGIPYKVVGGTRFYERREI 436 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L + L + +D +++ ++ P G + V+ Sbjct: 437 RDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLGVSFGAALRDAAAGK 496 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 + L + + D + + + L+ + + Sbjct: 497 VAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPD-LGELLNALLDATGYRAELENS 555 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 D +L L + E + + + G + +++ Sbjct: 556 NDPQDGARL--DNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGEAAPGSLQAFLE 613 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ + D + + +S + ++ ++ L F + L G +G +P + Sbjct: 614 KVSLVADADQIPDH--ESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRSLGDPKELS 671 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 + L + Q RS N + ASR+L + Sbjct: 672 EERRLAYVGITRAREQLY-----LTRA----ILRSSWGNPVTNPASRFLAEVPEDLIDWR 722 Query: 728 FDNL 731 + Sbjct: 723 REEP 726 >gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis Ellin345] gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter versatilis Ellin345] Length = 849 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 76/734 (10%), Positives = 184/734 (25%), Gaps = 117/734 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 S+ T +A E++ + G ++ P+I + D+ L Sbjct: 53 SILAMTFTNKAAAEMQERVEHLVGGRTLAKPVISTFHSFCVRVLRRDIEA---LQINGKG 109 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIID--IIETEE 163 ++ + ++ + +K L + + + I AKN ++D + + Sbjct: 110 YRKDFAIYDESDQ-QSLVKSAMKRLGIDDKQLTVRNVLSRISHAKN--HLLDPQEVYLQS 166 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE----- 218 + + K + L + NA + + Sbjct: 167 GDP-----------------KVERIAQIYKVYESELAKANALDFDDLLLMTNKLLKTSTE 209 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 ++I + +M +A V D W ++ Sbjct: 210 VRERYNRRFQYVLIDEYQDTNRPQYEIMRALAGT--LHNVCAVGDEDQSIYSWRGADIRN 267 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + P+ + +L + ++ V R Sbjct: 268 ILEFEQDF-----PEAKIVRLEQNYRSTQNILEAASAVVKNNLKRK-------------- 308 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI------ALRMSLDENKKKSALI 392 + + + V EA + E++ +A + D+ K++A++ Sbjct: 309 -------GKNLWTERMGGAKVGYYEAPDGENESLFVADYINKYLMIAHDEDDEPKRAAVL 361 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + +R + + R+GI ++ G + S L I +D +A+ + Sbjct: 362 YRTNSQSRLFEEAMRRYGIKYNVVGGFSFYERAEIKDMISYLKLIQNPSDSVALLRTINT 421 Query: 453 PLAKFGFPEKYL---------SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 P G +AL + + LK + Sbjct: 422 PTRGIGKTTVEQIERIALETNLPLWDALGHIVEQRLMQPRACAALKGFRELIQDARAMLY 481 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 + + + + L + + T + Sbjct: 482 GKFEERLVETAQVSKPEESDAAEPEIADEDLQDNMAFDFGELEPDAEEFSPEALGTAEEA 541 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKI-------IETGSCIKANAIEWIDIITRLIDGE 616 + L L + E A +++ +D Sbjct: 542 APEKVEGFRSPGENANVSEVLKFLIDRTGYIKQLEAEDTPESLARIENLRELVNAAMDSR 601 Query: 617 TVKPKIEK----------------SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK 660 I + + ++ ++ L F + + G+ EG++P + Sbjct: 602 DRGETIADFLDHAALVADTDDIEAGAQVTLMTMHAAKGLEFPLVFIVGMEEGLFPSSRT- 660 Query: 661 NPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRENN------IPTIAS 713 L ++ + + L+ +R+ + AS Sbjct: 661 -------------LMNPDEVEEERRLCYVGMTRAMRILVLSRARYRRRYGTDMPDASTAS 707 Query: 714 RWLQRLLVLGGTDF 727 R+L + D Sbjct: 708 RFLSEVPPQLFEDI 721 >gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 746 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 63/739 (8%), Positives = 159/739 (21%), Gaps = 125/739 (16%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 + T +A +E+R + G + L + +L Sbjct: 52 RILAITFTNKAAREMRERVDALIGDAAQDVWL---STFHSFCARFLRMELEHYGRYAKNF 108 Query: 104 ---SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 L + + D Sbjct: 109 VIYDAADSKGLLRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTAQATDFFAE-- 166 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + + +L E NA + + + Sbjct: 167 --------------------------QVAKIYALYQSKLQENNALDFDDLLMLTVELLTK 200 Query: 221 HLMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + I++ + A + + V+ D W Sbjct: 201 NEELRTKYQKKFQYILVDEYQDTNGAQYAITKLLDAEHRNICVV--GDADQSIYGWRGAD 258 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ +P+ ++ L + Sbjct: 259 MRNIMNFEK-----DYPEATVILL---------------------EQNYRSTKNILAAAN 292 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALI 392 N + ++ + + E E+ EA I + A++ Sbjct: 293 AVIENNLTRKKKELWTDNPTGDRITIYEGATEKNEASYIVREVERLHTMFHVKYGDIAVL 352 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 +R ++ G+ + + + + L I+ D +++ ++ Sbjct: 353 YRTNAQSRNIEEAFYATGVPYAMVGSVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINV 412 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 P L + R+ + ++ Sbjct: 413 PR-------------------------------RGLGPTSIARMMETAEEYRISLFEVIT 441 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + + L + + G I + + + E K Sbjct: 442 DAQLLSMIPKLSTKVKLALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKK 501 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + + + L S D + ++ V + T+ ++ Sbjct: 502 ED--NRDRLENLREFISVAKNFDDGAAEGENGLADFLAQIALISDVDQTEQSDGTVTLMT 559 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F + + G+ EG++P + L + + + Sbjct: 560 FHAAKGLEFPAVFMAGMEEGLFPHSRT--------------LLDDTEIEEERRTCYVGIT 605 Query: 693 GT-RHLIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 R L T + + + SR+L + + G + Sbjct: 606 RAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFLG-GTDLRAPSNIWSE 664 Query: 748 TTKQPHYKRPKPFPPLEAQ 766 + + KR P A+ Sbjct: 665 RSTRTERKRYMTPPQHTAE 683 >gi|291450479|ref|ZP_06589869.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291353428|gb|EFE80330.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 281 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 36/268 (13%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S + P R I +L P RGTL H ++ L + T Sbjct: 1 MSPSRASDFMQCPLLYRFRVIDRLPEKPSP-----AATRGTLVHAVLERLFDAPAAERTA 55 Query: 830 EINHLMKQIIDSHFEKENL--------------PPHIDIIWRHLFHKISHSFLEHEEKIQ 875 + E P W ++ + E+ + Sbjct: 56 PRATGLLPGEWERLLAERPELAELFSGEEGESTPGERLERWLGEAERLVERWFTLEDPTR 115 Query: 876 SSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDP 935 +E + + +ES G+ L G DR+D+ +G V I DYKTG P+ + Sbjct: 116 --LEPAERELFVEAELES-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-QYAEGALF 171 Query: 936 QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLI 995 Q++ A + + R++ L Y+ + D + D E+ + L+ Sbjct: 172 QMTFYALVVWR--LKGVLPRRL-QLVYLGSGEVRSYDPVMAD---------LERVERKLL 219 Query: 996 EIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 + +Q + + S+ + Sbjct: 220 ALWEAIQEATRTGDWRPKPSK-LCGWCD 246 >gi|103488489|ref|YP_618050.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98978566|gb|ABF54717.1| ATP-dependent DNA helicase, Rep family [Sphingopyxis alaskensis RB2256] Length = 770 Score = 94.6 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 83/764 (10%), Positives = 186/764 (24%), Gaps = 110/764 (14%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+R + G +P + + + Sbjct: 70 SEILAVTFTNKAAREMRERIGRMIGDAVEGMPWLGTFHSICARM---------------- 113 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D + + L W A+ LA +ID + Sbjct: 114 -LRRHAELVGLQSNFTILDTDDQLRVLKQ--LIQAEGLDEKRWPARQLAGLIDKWKNRGL 170 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 DL A E Y F + L + + + + +++ + L Sbjct: 171 TPADLDAADKEAYADG--KGQHFYALYQARLKT-LNACDFGDLLLHMLVILKTHRDVLEQ 227 Query: 224 -KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNIT 282 + I++ + + + +A + D W + Sbjct: 228 YQARFKYILVDEYQDTNASQYLWLRLLAQSRKNICCV--GDDDQSIYSWRGAEVANILRF 285 Query: 283 SSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNT 342 + G + + +N+ Sbjct: 286 EKDFP--------------------------GATVIRLEQNYRSTPQILAAASALIAQNS 319 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLAR 400 D L + + ++ + EEA I L N ++A++ + R Sbjct: 320 DRLGKTLWTELDAGDKLRVVGVWDGPEEARRIGEELETLQHRGVNLDRTAILVRAQFQTR 379 Query: 401 RVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP 460 + G+ I G + L + D +A +V P G Sbjct: 380 EFEDRFIAIGLPYRIVGGFRFYERAEIRDALAYLRLVQSSADDLAFERIVNVPKRGLGDK 439 Query: 461 EKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA 520 + ++ + + + R Sbjct: 440 ALQ----------------RIHQFARAERAPLFHAASRITETDELTPQARRQLASFIAQM 483 Query: 521 VLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 + + P +T S + +D + L+N+ Sbjct: 484 RNWQAKVGELSHPELTQLILDESGYTAMLQADRSAEAAGRLENLSELVRAMEEY------ 537 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + ++ + + E + T+ I+ ++ L Sbjct: 538 -----------------------DSLEAFLEHVSLVMDRDNDESAETVTIMTIHAAKGLE 574 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYT 700 FD + L G +GV+P A + + + E+ A A + + Sbjct: 575 FDHVFLAGWEDGVFPSQRAMD---------EGGTASLEEERRLAYVAITRARRRASIYHA 625 Query: 701 RSLRENNI--PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPK 758 + R +I SR++ + + +W+ + D + + Sbjct: 626 ANRRIYGQWMSSIPSRFIAEIPPDHIEMENSFGGGQSLWRANWSAQGDPFAHVAERQPSR 685 Query: 759 PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKD 802 A R + S P + Sbjct: 686 TMTRGPAWQRAVAASNTVTRAPAPSERGPAASVGAKPRADLAIG 729 >gi|152997239|ref|YP_001342074.1| exodeoxyribonuclease V subunit gamma [Marinomonas sp. MWYL1] gi|150838163|gb|ABR72139.1| exodeoxyribonuclease V, gamma subunit [Marinomonas sp. MWYL1] Length = 1131 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 104/926 (11%), Positives = 230/926 (24%), Gaps = 103/926 (11%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 ++ LL L + +P + I V Q L+ E + + Sbjct: 10 LEDLAV-LLAKILAVSPPENPFDDEF-----ILVQNPGMAQWLKMFLAESHSIAAGL--- 60 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLS 137 + L + A L P S + + RL+ + ++L D L Sbjct: 61 VFPLPSTFVWQTFAQSLDDI---PAQSEFNKPFLVWRLMRLLDSRLGDPEFQALS-WYLE 116 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG--------MWWLLAADFLK 189 + L ++ADI D W + W Sbjct: 117 EDDTQIRRFQLCSSIADIYDQYLVYRPDWIKSWEGGEAQDPKLTAIFEQQPWQAIL---- 172 Query: 190 IASKYWTERLVE-LNASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATA 243 W + + + + + ++ L+ A + I I G + P T Sbjct: 173 -----WRDLVADVSQRGTSLYHRGNLIEALHDKTQSSARPVGVPERIFIFGVSSLPPNTL 227 Query: 244 RLMSTVANHP--NGAIVLPGLDCHIPTAI---WNTITEKSTNITSSNTTYSTHPQYSLAK 298 + +A + + L + E + T + Sbjct: 228 ESLRVLAASGWIDVHLFLQNPCRFYWGDVVDKHYLGREIKRQTLKPGLSTDTLHLDANPL 287 Query: 299 LLDFLDIKREDVKRLGNVSNE----------------MYGRSMVISKSFLPPDTSDMRNT 342 L + + R+ + +L +++ + + + Sbjct: 288 LASWGRLGRDYIAQLQEMADNELVVFEDYRTEQSTGLLQWIQQDVLTLENHGSQQERDAK 347 Query: 343 DILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNL 398 + I + + + E + L + + K ++ D N Sbjct: 348 IRDASYRHPIAADDQSIRVHLCHSPLREVEVLHDQLLQMFESDPSLTPKDIIVMLPDVNT 407 Query: 399 ARRVK---------LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 R I + LL + ++ Sbjct: 408 YSPFVKAVFGSVKGSAQGRKHIPFALIDQSGGMENPIVDAYLYLLGLGESRFTLSELISV 467 Query: 450 VKHP--LAKFGFPEKYLSRAKNALELVALRGN------KNSYDIMDLKSLVLDRIATQKN 501 ++ P LA+F L R + V +R + M L+ + Sbjct: 468 LEVPAVLARFELTADELERIRQWSTEVGIRWGLDGKTAQQHDLPMQESHTWLNGVRRMLL 527 Query: 502 NTHVPHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC 560 + H L + LV + +L+ +W Sbjct: 528 GYAMGHDHIWEGTLSYGDVEGLEASVAGKLAEFLVAINDAQAKLMESLAPKEWISTLYYL 587 Query: 561 LQNVCL-DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 + L DE P L ++ + + +++ L+ Sbjct: 588 AERFFLVDEDDAFPALLSKQLDALTLQWQQAHFDA----PLDQQVLRQLLSPLLQESQGG 643 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + R + F + + GLNEG +P++ A F V Q ++ + Sbjct: 644 QRFLAG-RVNFCTLMPMRSVPFKVICVLGLNEGDYPRSVAPMGFDLMVGQYRSGDRSRRE 702 Query: 680 YIGQAAHDFEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 E R + R +N S + LL G + Sbjct: 703 DDKY--LFLEALMSARDCFYISYVGRSIQDNSEKNPSILVSELLEYIGQSCVFEGDQALT 760 Query: 737 CYLDWTRKLDYTTKQPHYKR-------------PKPFPPLEAQPRTYSFSEIKQLINDPY 783 L+ + + + + + +Y + L++ P Sbjct: 761 PDDAQKALLEKLILEHPLQPFNAAYYFQPQGSSHESTDQFDKRLYSYDEQWLPALLSVPV 820 Query: 784 AVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHF 843 A+ L+ + + D + + ++R+ K+ Sbjct: 821 DEEAQAFSPLEGLEQPRIDLALDELSRFIGHPTRYFTQRRLKAYLSLQEEEEKEDEPFAL 880 Query: 844 EKENLPPHIDIIWRHLFHKISHSFLE 869 + + + + + F+E Sbjct: 881 DGLAGYQLREGLLQAMLKGDEDQFVE 906 >gi|119716861|ref|YP_923826.1| hypothetical protein Noca_2636 [Nocardioides sp. JS614] gi|119537522|gb|ABL82139.1| conserved hypothetical protein [Nocardioides sp. JS614] Length = 299 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 78/261 (29%), Gaps = 26/261 (9%) Query: 748 TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTD 807 T + R S S ++ P R + +L Sbjct: 3 TPSESPAIRVSTPVDGVDVLGALSPSRAGDFMSCPLLYRFRTVDRLPEPFSPD-----AV 57 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENL----------PPHIDIIWR 857 RGT+ H ++ +L TP+ M + + W Sbjct: 58 RGTVVHKVLEDLFDLPAGDRTPDRAQAMLEPAWERLVEAAPELSELFPVDEDGAQVAAWL 117 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 + + E+ + +E + + ++S + L GF DRID+ G + + D Sbjct: 118 ASCRAVLERYFTLEDPRR--LEPAERELYVEALLDSR-LLLRGFVDRIDVAPDGAIRVVD 174 Query: 918 YKTGDNPKKETAQKLIDP-QLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN 976 YK+G +P + Q+ A + A L I L + + + Sbjct: 175 YKSGRSPS--EMFEAKALFQMKFYALVIWR-----TRGVVPAMLQLIYLGNGELLRYVPD 227 Query: 977 DKKKYSADELSEKSLKNLIEI 997 ++ + + E + + Sbjct: 228 ERDLLATERKIEAIWQAIRRA 248 >gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1] gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1] Length = 1120 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 73/747 (9%), Positives = 178/747 (23%), Gaps = 68/747 (9%) Query: 212 IALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIW 271 + A G+ R + V + G D + Sbjct: 391 DEAQDTAPRQWDIVQRLAEDFAAGEGARTDVQRTIFVVGDKKQSIYSFQGADPSEFDRMR 450 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSF 331 + I + + + A + L + + + + ++ +K Sbjct: 451 AHFKARLDEIDAPFQDAALIHSFRSAAPILSLVDRVAAKLGAPGLGDHIEHKAFFDAKPG 510 Query: 332 LPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR----------MS 381 + + N + + + A I + Sbjct: 511 RVDLWPAIEQVKGGDKPAWNDPQDLVSEDHHSSVLAQTVAAQIGAMVAAPPMIDVEGKRR 570 Query: 382 LDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLN 441 L+ + L ++ EL R + + L++ L L +L + Sbjct: 571 ALTAGDILILVRSRSPLFHKIIAELKRADLPVAGVDRSQLTSPLAVKDLMALCRFLATPE 630 Query: 442 DFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKN 501 D +++A +++ PL + Y ++ + +L + + Sbjct: 631 DDLSLACVLRSPLCGLSEAQLYDLAHGR--PGFLWSAMRDRISDFEDAHAILKDLRDSAD 688 Query: 502 NTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 R L+ + + + S Sbjct: 689 FLKPYDLLERALIRHDGRRRLIARLGPEAEDAVDAMLAQALAYEATEVPS-----LTGFA 743 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + + + +L E + + ++A + D + G +V Sbjct: 744 GWLDSGDVQVKRDLSQAEG-----QIRVMTVHGAKGLEAPVVILPDCAQKQGRGSSVSLL 798 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 + L + + +LK + Sbjct: 799 QPDGAPLIWAPGKGDEV---------------------------DAVTDAADLKKQREAE 831 Query: 682 GQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + + + AS + + G + + L+ Sbjct: 832 EANRLLYVALTRAETWLIVAASGQLGKGDDASWYKIVADAVAGMEAAALTVEG----LEG 887 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF-K 800 T T +RP A ++ + D A + +P Sbjct: 888 TGLRLQTGDWAEGERPAHATKTRATLPDWATAPAPAPEKDKPARRPSDLGGAKALPGMGD 947 Query: 801 KDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLF 860 + RGT+ H ++ L + + + ++S E L P ++ Sbjct: 948 ESATAMQRGTITHLLLEHLPR--LPQAAWPAAAPGIAALESDLSPEALAPMLEE------ 999 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + L + + ++ + G DR+ + + V D+KT Sbjct: 1000 ---ATRVLTAPHLTHVFTQDTLAEVEIAGHSPTLNADMIGIIDRLIVTPT-RVTAVDFKT 1055 Query: 921 GD--NPKKETAQKLIDPQLSLEAAALK 945 E + Q+ A L+ Sbjct: 1056 NATVPTAPEDTPDGLLRQMGAYAELLQ 1082 >gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] Length = 786 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 93/727 (12%), Positives = 201/727 (27%), Gaps = 94/727 (12%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 A + T +A +E+R + G +S ++ + + + P Sbjct: 94 AEILAITFTNKAAREMRDRVDRLVGPRSQLM-WVMTFHSACVRILRREAKRLG--YPTNF 150 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 I + RL+ + +L K P S A ++ + + E Sbjct: 151 TIYDQADAQRLMAMVCRELDLDPKRYPPRS-------------FAAQVSAFKNELIDHET 197 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS------PVGYQIALMRAE 218 L A + + RL E A L Sbjct: 198 AASRAQT--------HLERT---LAEAYRIYQTRLTEAGAMDFDDLIMQTVALFQLFPEV 246 Query: 219 AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 AEH + +++ + A L+ + P V + Sbjct: 247 AEHWRR-RFRHVMVDEYQDTNHAQYVLVRELVGRPEVRTV--------DGDVVREGVADP 297 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + + + A + + L+ +R+ + + Y + I + + Sbjct: 298 AELVVVGDADQSIYAFRGATIRNILEFERDFPDARTILLEQNYRSTQTILDA---ANAVI 354 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITAD 395 RN + + Q + ADNE +EA+ +A + DE A+ Sbjct: 355 SRNQGRKPKNLWSDQGPGPKIVGYVADNEHDEALFVAQEVDRLADEEGIKPGDVAVFYRT 414 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R + +R G+ I G+ L + L + ND +++ ++ P Sbjct: 415 NAASRVFEEVFSRTGLPYRIVGGVRFFDRKEVKDLLAYLRILVNPNDTVSLRRILNVPKR 474 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G RA+ +E A R ++ + N Sbjct: 475 GIGE------RAEAMIEAFAARERIPFWEGLKRAQEAPGLATRSLNAIRDFVALIEDLRA 528 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + LV+ + V + + + N + + +L + + Sbjct: 529 RELPLRDLVEEVANATGYRVELEESDDPQDANR-LDNIKELVSMAAEYEAANPDGG---- 583 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 + +++ ++ + D + + + + ++ Sbjct: 584 --------------------------LVGFLEQVSLVSDADEIPDGEDHGGVVTLMTLHT 617 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L F + L G+ +GV+ ++ + ++ + L + F A Sbjct: 618 AKGLEFPVVFLTGMEDGVF--PHQRSMTDPKELEEERRLAYVGITRAKQRLYFSRA---- 671 Query: 696 HLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYK 755 RS ASR+L + D K + T P Sbjct: 672 ---VVRSAWGAPSFNPASRFLDEVPAELIEWRTDPGKTPWTAATERREPGRSRTAGPARP 728 Query: 756 RPKPFPP 762 +P P Sbjct: 729 GARPIPA 735 >gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] Length = 706 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 82/735 (11%), Positives = 185/735 (25%), Gaps = 137/735 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 A + T +A E++ ++ G+ + D+ F A + Sbjct: 53 AEILAVTFTNKAAGEMKERLEKMVGRPAR---------DLWVSTFHAAAVRILRTYGEYV 103 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++ + + ++K++ E L P A+ ID I+ Sbjct: 104 GLRPGFVIYD-----EDDQNTLLKEVLKELELEAKPGPFRAM---------IDRIKNRGA 149 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + + G AA + + L A + + +H Sbjct: 150 GLAEYMREAPDFIGGVPKDAAA---EVYRKYQSGLRMQGALDFNDLLLLTIELFEQHPEV 206 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 + I + + P +L +A +V+ D + + + Sbjct: 207 LHKVQQRARFIHVDEYQDTNPVQYKLTRLLAGERPNLMVV--GDPDQSIYGFRSADINNI 264 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + +P + +L S + Sbjct: 265 LDFTK-----DYPGARVIRL---------------------EENYRSSSSILRVANAVIE 298 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLA 399 +N LE + + V L A N REEA +A + + ++ A++ + Sbjct: 299 KNALRLEKVLRPTRPGGEPVRLYRAPNAREEAAFVAREIVKLGN--FQQIAVLYRTNAQS 356 Query: 400 RRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF 459 R ++ L R + + + + L + D + + +V P Sbjct: 357 RLLEEHLRRANVPVRLVGAVGFFERREIKDLLAYGRVAVNPADSINLRRIVNTP------ 410 Query: 460 PEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKEL 519 P + + L A + ++ + V+ R + + + E Sbjct: 411 PRGIGATTVSRLVEHAQKTGTTVFEAFRVAEQVISRPQQVQAFVRLLDELIEAAFESGPT 470 Query: 520 AVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE 579 A +L+ K + ++ + + + L ++ Sbjct: 471 A--FFQRVLEQTGFREALKQEPDGEDRLQNVEELLRAAQDWEEEEGGSLSDFLDSV---- 524 Query: 580 EGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLL 639 L + + ++ ++ L Sbjct: 525 -------------------------------ALTAKAEEPQGDAPAEAVTLMTLHNAKGL 553 Query: 640 NFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHLI 698 F T+ L GL E + P + L E + + L Sbjct: 554 EFPTVFLVGLEENLLPHRNS--------------LHRLEDLEEERRLFYVGITRAQERLY 599 Query: 699 YTRSLREN----NIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + + T SR+L+ + + D + Sbjct: 600 LSYAEERETYGKREYTRPSRFLEDIPQDLLKEVG--------------AFGDSEVRVLPQ 645 Query: 755 KRPKPFPPLEAQPRT 769 RP+P P + Sbjct: 646 ARPEPKPRTQLAEFK 660 >gi|329121402|ref|ZP_08250027.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister micraerophilus DSM 19965] gi|327469692|gb|EGF15159.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister micraerophilus DSM 19965] Length = 1138 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 31/239 (12%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITEL----------I 820 S S++++ + PY + R LKL D G H+ + Sbjct: 775 SISQLEEYRSCPYKYFLNRGLKLS--DRQDGRIQNIDFGNYLHSGLKRFGNLLSSMNKTW 832 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI-----SHSFLEHEEKIQ 875 K + ++ + II L + H + F Sbjct: 833 KDLSDDEIDAFSNQISSIITPLVAHGTLTADATNAYTHRLLNMTFKKSIKQFKNW--SEN 890 Query: 876 SSIEKIFVNIPAKMAIESIG---IHLTGFADRID----LLKSGFVDITDYKTG-DNPKKE 927 S + + K+ I++ L G DRID + + DYKTG + + Sbjct: 891 SDFKTTDLEREFKINIKADDKDTFTLRGKIDRIDSYTTETSQCALAVCDYKTGIQSIDLQ 950 Query: 928 TAQKLIDPQLSLEAA-ALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADE 985 + I QL +K I L YI L + + +E Sbjct: 951 SIISGIKLQLVTYMLAMIKENPEKNI---IPTALMYIYLSNDAENFKNVPPDGIPAKEE 1006 >gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] Length = 1201 Score = 94.6 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 83/833 (9%), Positives = 195/833 (23%), Gaps = 99/833 (11%) Query: 63 EFIEITGKKSTILPIIKSLGDVVEE-KFTADLLLSYNLNPPVSNIQRLLELARLILIWRN 121 F + + P + + L L + + + +LA ++ + Sbjct: 136 LFPDGLPGSDALEPKVSTYHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYD 195 Query: 122 KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDI-------IETEEKKWEDLHALK- 173 + I LA A+ + + +E L L Sbjct: 196 GEYGHFRAAKSTLVK-------AVIQLAGECAEHLQEPEDVEAWLMARLSDFEALPYLAD 248 Query: 174 ----NEKYGMWWL---LAADFLKIASKYWTERLVELNASSPVGYQIALMR-----AEAEH 221 + + + A R A Sbjct: 249 KKKNPPQAAAELAGMLRTRASVADMVGRYASAKRSRGALDFGDLVALAARVAQEVPLAAQ 308 Query: 222 LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNI 281 + + +++ + A L S + G V D + + + Sbjct: 309 MERQRYKVVLLDEFQDTSHAQLVLFSRLFG--GGHAVTAVGDPNQSIYGFRGASAGQLFH 366 Query: 282 TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRN 341 + ++ R+ + + + Sbjct: 367 FVREFPVWNG-SAGKSDPSQGPEVDSGSWSPAPTSYLTTAWRNGRSILAAANVMSEALGR 425 Query: 342 TDILE--------------NKIPNIQKCFSDVALIEADNEREEAISIAIA---------- 377 P+ V L ++ +EA +IA Sbjct: 426 AAAQRGPAGGGGPAAPEVPPLQPSPHAAAGSVVLGRFGSDVDEAGAIAEDVLKYRMTDFE 485 Query: 378 LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAI 437 L+ A++ R ++ +L GI +I L T L + L + Sbjct: 486 LKPDGSRVPPAIAVLCRRRAQMEPIRRQLEARGIAYEIVGLGGLLDTPEIVDLVATLRVL 545 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSR-----AKNALELVALRGNKNSYDIMDLKSLV 492 A+ L+ + G + R + G + D + Sbjct: 546 ADPGRSDALMRLLAGARWRIGPADLMALRDWSSQLARRRGVSGPAGGHLTEDGPTVLEGD 605 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 L A+ + +S + L + +L+ L + L + + Sbjct: 606 LTDGASLVEALDWLPREGWISANGRSLTPAARERMLRLSAELRQLRGYLGDDLTTL-LGE 664 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + ++ + + ++ F + + + + W++ Sbjct: 665 VERAMLLDIEVAARPGISIHQARRNLDAFQDAAAGFLRTSQRVDILAF--LSWLEAAAAE 722 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-----FLSRV 667 +G P + +L S+ L +D + + GLN +P + L Sbjct: 723 ENGLEAPPSEVSREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSRWSSGSAALPWP 782 Query: 668 MQSDLNLKTAEK------------------------YIGQAAHDFEMANGTRHLIYTRSL 703 ++ D + + + +++++ S Sbjct: 783 LRGDRADLPQWDLDQPDQKGWLDAEKDFKADALAHGELEERRLAYVAYTRAKYVLWASSA 842 Query: 704 RENN---IPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 S +L L VL G + + L T+ + Sbjct: 843 AWVGSRSGRAEMSPFLAELEVLAGPLQGEAPRATIHPRSVEEASLPETSPLTLDAEVAGW 902 Query: 761 PPLEAQPRTYSFS----EIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRG 809 P + + + + + R+L P + D G Sbjct: 903 PYDPLEGPVDPRTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVG 955 Score = 76.9 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 70/665 (10%), Positives = 155/665 (23%), Gaps = 56/665 (8%) Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 I D+ L + S+++ R V + + ++ + + Sbjct: 561 ARWRIGPADLMALRDWSSQLARRRGVSGPAGGHLTEDGPTVLEGDLTDGASLVEALDWLP 620 Query: 361 LIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIP 420 + +++ A RM + + +L + ++I+++A Sbjct: 621 REGWISANGRSLTPAARERMLRLSAELRQLRGYLGDDLTTLLGEVERAMLLDIEVAARPG 680 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNK 480 +S L + +A ++ A A E Sbjct: 681 ISIHQARRNLDAFQDAAAGFLRTSQRVDILAF---------LSWLEAAAAEENGLEAPPS 731 Query: 481 NSYD--IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + L + + + S+ D + Sbjct: 732 EVSREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSRWSSGSAALPWPLRGDRADLP 791 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 D K E R+L + + L + + + + S Sbjct: 792 QWDLDQPDQKGWLDAEKDFKADALAHGELEERRLAYVAYTRAKYVLWASSAAWVGSRSGR 851 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 + ++ + P+ ++ L E Sbjct: 852 AEMSPFLAELEVLAGPLQGEAPRATIHPR---------------SVEEASLPETSPLTLD 896 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 A+ + + AA + + R + Sbjct: 897 AEVAGWPYDPLEGPVDPRTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVGP 956 Query: 719 LLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 G + + R + S S + +L Sbjct: 957 AGGTQPGARNVPAPDAGLPGVSSGWAREAALLLERRARRSSAQDVHLPTH-ISASTLVEL 1015 Query: 779 INDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI 838 DP AV + +L + GT FH + E + + Sbjct: 1016 DEDPSAV----LWRLRRPVPREPGMSARK-GTAFHAWVEEYFGTAGMLDLGDAPGS-DDH 1069 Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 ID+ ++ + +F +S F+ +P + + + + Sbjct: 1070 IDAAYD---------------LDAMVATFKASPWAHRS---PAFIEVPVETRV--GDVVV 1109 Query: 899 TGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVA 958 G D + G D+ D+KTG P + QL+ A + V Sbjct: 1110 RGRIDAVFQDADGRWDLVDWKTGRRPSG-ERLRTRAVQLAAYRLAWSR--LKGVPLEDVR 1166 Query: 959 NLFYI 963 F+ Sbjct: 1167 AAFFY 1171 >gi|330503686|ref|YP_004380555.1| DNA helicase/exodeoxyribonuclease V subunit gamma [Pseudomonas mendocina NK-01] gi|328917972|gb|AEB58803.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Pseudomonas mendocina NK-01] Length = 1138 Score = 94.2 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 119/957 (12%), Positives = 246/957 (25%), Gaps = 92/957 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITG-KKSTILPIIKSLGDV 84 L V+ R PL P L + + V + Q L+ E G + L + + Sbjct: 22 LRTLAVQWMRRYPLRP--LENEVLLVQSNGIAQWLKLALAERDGCGIAAALDVDLPARFL 79 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + + P+ L RL+ + + L+ Sbjct: 80 WQAYRNVLGKDAIPQQSPLDKAPLTWRLMRLLPGLLAEEAFAPLRRF----LADDQDLRK 135 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKY---GMWWLLAADFLKIASKYWTERLVE 201 LA+ LAD+ D + W A +++ + D + W L + Sbjct: 136 RHQLAERLADLFDQYQVYRADWLADWAAAHDRLRTSRGGERILDDDSRWQPALWRALLAD 195 Query: 202 LNASSPVGYQI----ALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNG 255 + + + E I + G + ++ +A Sbjct: 196 VGEQHLAESRAGVHPRFVARMGELDAAPPGLPRRITVFGISSLPAQVLEALAAMARFSQV 255 Query: 256 AIVLPGLDCHIPTAI-----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H I + + Q+ L + Sbjct: 256 MLYVHNPCQHHWGDIVEDKDLLRHEYRRQQRKGKPSAQIGLFEQEDMHQHGQPLLAAWGK 315 Query: 305 IKREDVKRLGNVSNEMYGRSMVIS------------KSFLPPDTSDMRNTDILENKIPNI 352 R+ + L R L D D+R + P + Sbjct: 316 QGRDYINLLDQYDEPQRYREQFERIDLFSPASECCLLGQLQNDILDLRPLADTRSTWPPV 375 Query: 353 QKCFS-DVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL- 406 + A + + E + L S E + ++ D N + Sbjct: 376 DPARDHSLRFHVAHSAQREVEVLHDQLLASFSEDSTLRPRDVIVMVPDVNAYAPHIQAVF 435 Query: 407 ------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGF- 459 I ++ L LL I L+ + F Sbjct: 436 GQFASDDPRFIPFTLADQGLRGKEPMVIALEHLLRLPDSRFSVSEILDLLDVAALRERFA 495 Query: 460 -PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSR 511 E L + LE +R ++ L ++ + V + Sbjct: 496 IAEDQLPTLRRWLEGAGVRWGLDASQRQSLGLGENLEQNTWRFGLRRMLLGYAVGKADAF 555 Query: 512 LSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHR 570 E + L I L T + + W + + L L ++ Sbjct: 556 AGIEPYDEIGGLDAALIGPVTRLLETLDQHLQLMREPTTPVQWGERLRSLLDGFFLAQND 615 Query: 571 KLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFI 630 + L + L + + +D + + + + Sbjct: 616 REEVL-TTQLLDALDAWLELCEAATLDEALTLPVVREAWLGGLDQGRLSQRFLAGA-VNF 673 Query: 631 LGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEM 690 + R + F + L G+N+G +P++ A F ++ + + + Sbjct: 674 CTLMPMRAIPFRQVCLLGMNDGDYPRSQAPLDFDLMAGDYRPGDRSRREDDRYLLLEALL 733 Query: 691 ANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDF--------------FDNLKKR 734 A L + R +N S + +L + + L+ Sbjct: 734 AAR-DRLYISWVGRSIRDNSERPPSVLVGQLRDHLASAWTLAGGGDLLHGLTTEHPLQPF 792 Query: 735 GQCYLDWTRKLDYTTKQPHYKRPK--------PFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + Y D +L ++ P + R + ++ + DP + Sbjct: 793 SRRYFDGEAQLFSYAREWAALHGHALAGENFVAPLPAWEEGRQLTPELLQSFLRDPVKCF 852 Query: 787 ARRILK--LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 R LK LD + D + L + E + K + + ++ D Sbjct: 853 FTRRLKVFLDEDEQAQLDSEPFALDGLQRYQLQETLLKAAVAGDVDSDDALRAAADRLQR 912 Query: 845 KENLP-PHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900 LP +R+ + + L + + V P ++ + G+ L G Sbjct: 913 SGVLPLAGFGEQYRNALLEPLPAQLRRYQGLCLCW-PTPVESPQRLLFSAAGVDLDG 968 >gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] Length = 824 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 84/717 (11%), Positives = 194/717 (27%), Gaps = 86/717 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + + P + T +A E+R ++ G ++ + + + Sbjct: 60 TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAQLVGPRANSM-WVSTFH 115 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L + LN S + D + +S + Sbjct: 116 SSCVRILRAQAGLLHGLNSNFS------------------IYDADDSRRLLTMISKDLEI 157 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + A+ LA I ++ E E+ A + + ++ +RL Sbjct: 158 DTKRYSARLLATKISNLKNELIDPEEAAADADRDSND----LDKLVARVYAHYQQRLRAA 213 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP---- 253 NA + + + +++ + A L+ + Sbjct: 214 NALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGEESDDP 273 Query: 254 ---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + D + T ++ +P L + + Sbjct: 274 YAVPPGELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 328 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 +V + GR E ++ + ADNE +E Sbjct: 329 SAANSVISRNTGRR---------------------EKRLWTDSGEGELITGYVADNEHDE 367 Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A +A L + + + A+ N +R ++ R GI + G Sbjct: 368 AQFVASEIDRLVDAGETKFGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEV 427 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + + L + +D +++ ++ P G + + V + Sbjct: 428 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGS 487 Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + IA+ ++ D + + + + +T Sbjct: 488 VPLLNTRSQKAIASFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLD-----RTGYRRE 542 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 S + V + + ++ + + G + Sbjct: 543 LEVSSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAA 602 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +++ ++ + D + V E + ++ ++ L F + + G +G +P A Sbjct: 603 FLERVSLVADSDQV--PDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPA 660 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 + L A I +A H + RS + SR+LQ + Sbjct: 661 ELSEERRL----AYVGITRARHRLYLTRA-----IVRSAWGQPVTNPESRFLQEIPA 708 >gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115] gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115] Length = 744 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 74/730 (10%), Positives = 172/730 (23%), Gaps = 117/730 (16%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + T +A E+R + + + L + + A Sbjct: 59 DPGEILAVTFTNKAAAEMRER-AQHLVEGADRL-WMSTFHSAGVRILRAYGEHI------ 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 ++R + + L +++ + P + P L IID ++ Sbjct: 111 --GLKRGFVIYDDDDQ-SDILKEVMGSIPGIGPETSPRV----------LRGIIDRAKSN 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-- 220 DL A A + + R NA +R E Sbjct: 158 LITPGDLGRSGEPYISGLPREVAA---EAYRRYEARKRSQNAIDFGDLITETVRLFHEVP 214 Query: 221 ---HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + ++ I + + A L +A+ +V+ D + + Sbjct: 215 AVLNAVQNRARFIHVDEYQDTNKAQYELTRLLASRDRNLLVV--GDPDQSIYKFRGADIQ 272 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + ++ + Sbjct: 273 NILDFQKDYPD--------------------------AKVYMLEHNYRSSARVLNLANKL 306 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITAD 395 NT+ L+ + +++ V A + R E +A L E +K A++ Sbjct: 307 IENNTERLDKTLKPVKEEGHPVMFHRAMDHRGEGEFVAEWLTRMRGEGRKFADMAILYRT 366 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R ++ L R I I G+ + + +D +A+ ++ P Sbjct: 367 NAQSRVIEESLRRVQIPAKIVGGVGFYDRREIRDILAYARLAINPSDDVALRRIIGRPKR 426 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G L + + Sbjct: 427 GIGDTALEKLMEWARLNET--------------------------------SLLTACANA 454 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 + + L+ + + L + + + Sbjct: 455 SERNILDRGAQKPVDFAELMQAMADAADNYEPAPFLRYVIENSGYLDLLRQEGQEGQVRM 514 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 EE + +S+ E + + + + + K + ++ Sbjct: 515 ENLEELVNAAEEWSQTNEGTIADFLDDAALLSSVDDM--RTRKENKDVPEDAVTLMTLHN 572 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L F + + G EG+ P A L A + + Sbjct: 573 AKGLEFPVVFIVGTEEGLLPSKGA--------------LVEAGGIEEERRLFYVGITRAM 618 Query: 696 HLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 ++ + + SR+L+ + F+ + GQ Sbjct: 619 ERLFLTAAQNRMQYGKTNAAEDSRFLEEI-----EGGFETIDPYGQVIEYRATTWKQYRP 673 Query: 751 QPHYKRPKPF 760 Sbjct: 674 TVPAAPSAVK 683 >gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1] gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 1061 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 103/917 (11%), Positives = 240/917 (26%), Gaps = 71/917 (7%) Query: 64 FIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKL 123 F + + D+ E + L S ++ L+ ++ +L Sbjct: 177 FAARNAQDLLAHFPSMTSSDLDAELLRTLPDVLALLQDANSKVKLTATYITLLKDFQREL 236 Query: 124 PDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLL 183 + L+ A L +A + + ++ + + + Sbjct: 237 QQGNARWSDWAKLAKTAPEAKLTPL---VAGVTERVQRYAEHPR-----LHADLREYLDQ 288 Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL----MKGTKGPIIIAGSTGSI 239 + A + ++ +EL + AL+R ++ +++ + Sbjct: 289 IFNLAIDALQLYSRNKIELGVLDFADQEHALLRLLDNPAVIEVLEQELDLVMVDEFQDTS 348 Query: 240 PATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 P + +A V D + + Sbjct: 349 PMQLAIFLKLARIAKR--VYWVGDIKQAIYGFRGSDCALMQAILGALPGMGG-------V 399 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + L L ++NE++ ++ S S + R + N S+ Sbjct: 400 KEVLPKSWRSRPELVELTNEVFTQAFSNSLSADEVRLTPTRQDPLGGPAFANWILDGSNA 459 Query: 360 ALIEADNEREEAISIAIA-------LRMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 + + + D ++ + +V L G+ Sbjct: 460 EQQTCALAEGIGQLLESRYQVFDKTTQQARDLQAGDITVLCYSHSNVAKVAAALAAAGLP 519 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 +A L T +++ + L + D +A A +V E A+ Sbjct: 520 -CSTAQPGLLATPEATLALACLRRLNDPTDTLATAQIVS----MTSAEEPESWVAERLHY 574 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 L A + +A + + + +A + + + Sbjct: 575 LHAGHPQGQWREQTVDAHAAHPLVAELARLRADLPLLTPVEALQRLIAECDLARCVTGWS 634 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEE-EGKTLSSLFSKI 591 T + ++ + + +N LW + G +L + Sbjct: 635 --TTPAQAQKRLANLDALLELAQRYQDLCRNGLGAASISGLVLWLGQTAGAGNDALATPA 692 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 ++ + +A + ++ ++ + + +S L D L + Sbjct: 693 LDAVRVMTHHASKGLEWPVVILMDLA---RDVGERLWSVSAQSDSALDPNDPLRDRFIRY 749 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKT--AEKYIGQAAHDFEMANGTRH-LIYTRSLRENNI 708 WP KN L+ + K E + R L+ RS R Sbjct: 750 WPWPLGKQKNVPLADTIGKTPAAKACRDEAVEEAKRLLYVSMTRARDFLVIARSSRRLTG 809 Query: 709 PTIAS---RWLQRLLVLGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPF 760 P + WL R + T + + P Sbjct: 810 PWLDCVQAPWLTTEAGTHELQLKSGTTVRVEHRTLGAGSAPVIATATTNQLHWFASPDSV 869 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 P S ++ L A+ ++ + +PD + GT H + Sbjct: 870 TPRLPLGVQPSATQASALAG------AQETCRIGSRITLQGNPDMSAVGTAIHASLGLSF 923 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEK 880 + + + + Q L + R + + + + Sbjct: 924 SDPERPISQDEVNRLLQ---------GLDVLEHVDARQVLAQ-VTALHAWIASRWPHADA 973 Query: 881 IFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI--DPQLS 938 + P + +++ + L G D + G + D+K+ P+ + + QL Sbjct: 974 VA-EYPVQQLLDAGQV-LDGRIDLLLATPEG-WVLIDHKSNPAPEAQWQRLAATHAGQLQ 1030 Query: 939 LEAAALKAGSFSQIDCR 955 A A++A S + Sbjct: 1031 AYAKAVEAASGKPVTEA 1047 >gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 83/838 (9%), Positives = 189/838 (22%), Gaps = 91/838 (10%) Query: 155 IIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS-PVGYQIA 213 ++ E + E L A + + L L + + ++ +G + Sbjct: 324 LLAEAERLYRLTERLRAARIAEATGALLTLGGALLASYRRAKTHRALMDYDDLILGARDL 383 Query: 214 LMRAEAEHL----MKGTKGPIIIAGSTGSIPATARLMSTV--------ANHPNGAIVLPG 261 L R + G ++I + + P ++ + V Sbjct: 384 LARPGVAPWVLYKLDGGIDHVLIDEAQDTNPDQWAVVEKLTEEFFAGRGARETLRTVFAV 443 Query: 262 LDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS----------LAKLLDFLDIKREDVK 311 D + + L+ Sbjct: 444 GDAKQSIYSFQRADPREFERMREAFATHVPAAGGKWEVVDLNLSFRSAPAVLEAVNAVFA 503 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN-IQKCFSDVALIEADNER-E 369 + + G + + ++E + + + V I D+ R Sbjct: 504 PGRPGRDGVAGDEDITHLPHRGGQAGRVEVWPVVEPRPADELPAWKPPVERIRGDSPRTR 563 Query: 370 EAISIAIALRMSLD-----------ENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 A +A +R +D L+ + EL + + + Sbjct: 564 LARLMAARIRAMIDGEVLESKGRPVRAGDVLVLVRRRGGFVEDLVRELKSRKVEVAGADR 623 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRG 478 + L+ + L +L N + D + +AT++K PL G + + ++ Sbjct: 624 MVLTEQMAVMDLMALGNFLLLPEDDLTLATVLKGPLVGLGEDQLFTLAHHRGKDVGLWEA 683 Query: 479 NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYK 538 + R ++ L + + Sbjct: 684 LRQGVADEGGVFEAAFRRLSELLAQADRVSPHTLYARVLGPLGGRRRLLARLGLE-AEDS 742 Query: 539 TNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCI 598 ++ + L + +L + G+ + Sbjct: 743 IDEFMSLTLAFERAHPPSLQGFLHWLEAGALEIKRDLE--QAGRDAVRIM---------- 790 Query: 599 KANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNT 658 TV + + L L+ G EG P Sbjct: 791 ------------------TVHGSKGLQAPIVFLPDTMQVPTRSPRLLWLGEGEGELPAWP 832 Query: 659 AKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQR 718 + + V + + + + + + R Sbjct: 833 PRAEDMDSVCRQGADARKQSREREYRRLLYVAMTRAEDRLVVCGWRGLKAAPETCWHALV 892 Query: 719 LLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 L T + L ++ P Sbjct: 893 QCALAPTAAAFDDPFLAKAAETAEGPVLVLANAQTAPPEKEKGAGPGAGQSSPLPDWALL 952 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT--DRGTLFHNIITELIKKRINKNTP 829 +E + + P A + + + RG L H ++ + + Sbjct: 953 SAEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDGKPRWQRGKLIHRLLQTVPDLPPPDRSR 1012 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKM 889 + + + ++ + L+H +P Sbjct: 1013 AMLRFLARPAW----------GLETPEQLAIANEVSDILDHPGLAGLFAPGSRAEVPLVG 1062 Query: 890 AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNP--KKETAQKLIDPQLSLEAAALK 945 I ++G DR+ + V I DYKT P + +L Q++ AL Sbjct: 1063 RIGDR--VVSGRVDRLAV-SDTEVVIADYKTNRRPPATPDEVPELYVRQMAAYRLALA 1117 >gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] Length = 1165 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 76/808 (9%), Positives = 165/808 (20%), Gaps = 81/808 (10%) Query: 182 LLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMKGTKGPIIIAG 234 + + L A + + + +++ Sbjct: 358 QALFQIAAEIHRRVEAQKARLGALDFDDLIHKALDLLGRVGAGWVLYKLDRGIDHVLVDE 417 Query: 235 STGSIPATARLMSTVAN--------HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 + + P ++ + D + + +T ++ Sbjct: 418 AQDTNPEQWAILRAITQEFAAGEGARIGSRTRFAVGDPKQSIYGFQGAEPREFALTRASW 477 Query: 287 TYSTHPQ-------------YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + S +L +D +S E R+ V + + Sbjct: 478 IAESRSAGLTFEDVPLTLSFRSTGLVLRAVDAVFALDAHNEGLSFEDTVRTTVHASARPG 537 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE-AISIAIALRMSLD--------- 383 + + V E A +A A+R Sbjct: 538 APGAVELWPIAEPEPAAEPDAWTAPVDAPETSAPAIVTARRVAQAVRAWTTTGDATGRIW 597 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 L+ V L G+ + + +S + + L + A D Sbjct: 598 RPGDVLILVRKRGPAFEEVIRALKGIGVPVAGQDRLEVSAHIAVADLVAAGRAGLLPADD 657 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 + +AT +K PL + A+ L + D A + Sbjct: 658 LTLATALKTPLVGLTDDDLVRIAARRDLAETLEDALHRH-------AEAGDAAARRGLEA 710 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 L+ + + T + Sbjct: 711 LSGWIALAGLHGPFGFYARLLGPQGGRAKLVARLGGEAGDAIDVFLAAAAQAETGEDAPS 770 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIE 623 + R + E G T+ + + + + ++ +I Sbjct: 771 LGGFLARYVGA----EAGHTVKRDLESGRDEVRVMTVHGAKGLEAPVVVILDGCEPLGRN 826 Query: 624 KSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQ 683 L + T + + + + Sbjct: 827 DPPLLPLPATEIALPPVWSGGRTQDCAATDAARAALLAKARQEHNR-------------- 872 Query: 684 AAHDFEMANGTRHLIYTRSLRENNIPTIA--SRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 + + R + T A R + L G L Sbjct: 873 --LLYVAMTRAADRLIVAPFRGHERETEAAWCRMIHAGLEAALGAGRSLELPYGPATLWQ 930 Query: 742 TRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK 801 P LE + + P Sbjct: 931 DGAPAGPAPAAAAPASGPEAELEPDWLRGPVPPEPAFEALNPSGALQAADGARVPPPRLA 990 Query: 802 DPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFH 861 D RG L H ++ L + + ++ P + Sbjct: 991 DAQARRRGILTHALLQHLPRVEPARRETAGRAFVRARA----------PGLPRAAAPAIV 1040 Query: 862 KISHSFLEHEEKIQSSIEKIFVNI--PAKMAIESIGIHLTGFADRIDLLKSGFVDITDYK 919 + ++ E + ++ + G DR+ + V + D+K Sbjct: 1041 RSVLRIVDAPELAPLFAPDARAEVALSGRVRAGGTDRVVQGRVDRLAVTAD-AVHLADFK 1099 Query: 920 TGDNP-KKETAQKLIDPQLSLEAAALKA 946 TG P Q++L A L Sbjct: 1100 TGRPPEPGAPLPAAEAGQIALYARLLAQ 1127 >gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] Length = 827 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 73/708 (10%), Positives = 174/708 (24%), Gaps = 107/708 (15%) Query: 50 YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A +E+ + + + I + + A + L + Sbjct: 80 VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQAA-KLPQAFQILD 135 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 +L+ + + + D + K L I + E + Sbjct: 136 TQDQLSAIKRLCKQFNVDDERFPP------------------KQLMYFIAGCKEEGMRPG 177 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA-----LMRAEAEHL 222 D+ A + + + E+ + A H Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDAHLRHH 228 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276 + I++ + + + +A + + A V+ D + Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + ++ S + Sbjct: 289 GNMADFIREFDVKNQI--------------------------KLEQNYRSFSNILDCANA 322 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393 N++ L + Q V + EA ++ EA + ++ + + ++ A++ Sbjct: 323 LISHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVRNDGFTRQEIAVLY 382 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R ++ L I + G+ + L + +D + +V P Sbjct: 383 RSNAQSRVIESALFNSKIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G + + +L + L R Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDVLREQTQGRTLREI 502 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E E L++H + + S + + LDE + P Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561 Query: 574 NLWF--------------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L +E + + + ++ + + ++ + L G+ Sbjct: 562 QLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + ++ S+ L FD + +GG+ E F D E+ Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670 Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723 + A + + L + S + SR+ L Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714 >gi|254387026|ref|ZP_05002304.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1] gi|194345849|gb|EDX26815.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1] Length = 533 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 49/405 (12%), Positives = 96/405 (23%), Gaps = 37/405 (9%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE A + I +++A ELR G P + Sbjct: 94 TLVEAAAARVEAGTDPARILILTFSRKAAVELRDRAALRLGG--ARAPQATTFHSFCYGL 151 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 A +P L + L + + + Sbjct: 152 VRAHQDTDLFADPL------RLLSGPEQDVMVRTLLEGQRRQRSIRWPDDLRAALTTRGF 205 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A + ++ L W AA FL ++ Sbjct: 206 ADEVRAVLARARELGLGPHALSDFAARLGRPDWQAAAAFLSEYLDVLD---LQGTLDYAE 262 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 A++ AE + I + + + RL+ + G ++ D Sbjct: 263 LLHRAVLLAERTPSLAAAYDVIYVDEFQDTDASQLRLLRALTG--PGGTLVAFGDPDQSI 320 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS 328 + +T + L + R L + + R Sbjct: 321 YAFRGADINNTLDFEGAFPG---------ARVRALTVGRRSASALLAATRLLTSR----- 366 Query: 329 KSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-- 386 + + + ++ + V + E +IA LR + E Sbjct: 367 -----MPLTRLPAAAVRAHRGLTPIREGGRVEVFTYPTAGAELDNIADVLRRAHLEEGVP 421 Query: 387 --KKSALITADRNLARRVKLELTRFGINIDISA-GIPLSTTLHSS 428 + L+ A ++ L G+ + PL + Sbjct: 422 WQDMAVLVRAGGRTLPAMRRALISAGVPAETDGTDTPLRHEPAVT 466 >gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] Length = 759 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 54 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + + ++S ++ + + + + Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQSMSLLDAS-----SNV 443 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSNLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 +++ TR+L +R+++ + Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 643 >gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] Length = 830 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 80/728 (10%), Positives = 180/728 (24%), Gaps = 86/728 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + + P + T +A E+R + G ++ + + + Sbjct: 61 TAVLTRRIAYLLAERGVTP---GQILAITFTNKAAAEMRERVAALVGPRANAM-WVSTFH 116 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L LN + D + L L + Sbjct: 117 SSCVRILRAQAALLPGLN----------------SNFSIYDSDDSRRLLTMISKDLELDT 160 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A+ LA I ++ E E+ ++ + ++ +RL Sbjct: 161 KRFS--ARLLATHISNLKNELVGPEEAVVAADQDPAE----LPRLIAKVYGHYQQRLRAA 214 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN--- 254 NA + + +++ + A L+ + Sbjct: 215 NALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESD 274 Query: 255 ----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 A + D + T ++ +P L + + Sbjct: 275 HAVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 329 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 +V ++ GR E ++ + ADNE +E Sbjct: 330 SAANSVISKNTGRR---------------------EKRLWTDSGEGELIVGYVADNEHDE 368 Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A +A L + A+ N +R ++ R G+ + G+ Sbjct: 369 ASFVASEIDRLVDQGETKFADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEV 428 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + + L + +D +++ ++ P G + + ++ Sbjct: 429 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGK 488 Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + IA+ D++ L D L Sbjct: 489 VALLNTRSQKAIASFLEMMDGLRALLPTPAADEDEPFELGDIGEVAEAVLERTGYRAELA 548 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + L N+ L + + + Sbjct: 549 ASSDP------QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGS 602 Query: 605 WIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + R+ + + + + ++ ++ L F + + G +G +P A Sbjct: 603 LAAFLERVSLVADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP 662 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + L + + A RS I ASR++Q + Sbjct: 663 AELSEERRLAYVGITR--ARQRLYLTRA-------IMRSAWGQPIQNPASRFIQEIPEDL 713 Query: 724 GTDFFDNL 731 ++ Sbjct: 714 INWRREDP 721 >gi|29833214|ref|NP_827848.1| hypothetical protein SAV_6672 [Streptomyces avermitilis MA-4680] gi|29610336|dbj|BAC74383.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 286 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 82/270 (30%), Gaps = 32/270 (11%) Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKR 823 PR+ S S + P R I KL + RGTL H ++ L Sbjct: 4 AVPPRSLSPSRASDFMQCPLLYRFRVIDKLPEK-----PSEAATRGTLVHAVLERLFDAP 58 Query: 824 INKNTPEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEK 873 + T + + ++ W ++ + E+ Sbjct: 59 AAERTAPRARSLVPGQWDRLRESRPEVVELFADDPEGERLARWLGEAEQLVERWFSLEDP 118 Query: 874 IQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI 933 + +E + + ++S G+ L G DR+D+ SG V I DYKTG P+ + Sbjct: 119 TR--LEPAERELFVEAELDS-GLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP-EYAEGA 174 Query: 934 DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKN 993 Q+ A + + L + L + E+ + Sbjct: 175 LFQMKFYALVVWR-----LKNVVPRRLQLVYLGSGDVLTYDPVVAD-------LERVERK 222 Query: 994 LIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 L + +Q + R ++ + Sbjct: 223 LHALWDAIQLATETGNWRPRPTK-LCGWCD 251 >gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316] gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316] Length = 759 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 86/706 (12%), Positives = 206/706 (29%), Gaps = 126/706 (17%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 54 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + + ++S ++ + + + + Sbjct: 412 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 443 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 444 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 +++ TR+L +R+++ + Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDELIQHQGLARP 652 >gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] Length = 664 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 77/717 (10%), Positives = 183/717 (25%), Gaps = 122/717 (17%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + T +A +E+ E+TGKK L + + + + Sbjct: 51 SQILALTFTNKAAREMEERIKELTGKKLQNL-TVSTFHAFGVKILREHIAA--------- 100 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 L WR+ L + ++ D D+ Sbjct: 101 ------------LGWRS----NFSIYDETDRNQLIKELGKELKFSQ---DSFDVYAV-GA 140 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM- 223 + ++ W D ++ + + + L NA + ++ EH Sbjct: 141 LFSNIKM-----GRKSWRGEHDAYRLLYQEYQDSLKIYNAVDFDDLIMLPIQLFTEHPEI 195 Query: 224 ----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKST 279 K I++ + M +A + V D W ++ Sbjct: 196 LAEYKNRYRYIMVDEFQDTSIQQYNFMKLIAENN----VCVVGDDDQSIYSWRGANFENI 251 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 + + PQ KL + Sbjct: 252 RMFEKDF-----PQLVEIKL---------------------EQNYRSTGTILAAANGVIA 285 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK---KSALITADR 396 NT+ E + + + + + E EA IA + + ++ Sbjct: 286 HNTNRKEKALWSGNDSGKPIEIFIPETETVEADFIADMILTEKARENRSFSDFGVLIRAN 345 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 +L+R ++ I +S G + S L + +D + + ++ P Sbjct: 346 SLSRAIEESFLNANIPYKMSGGTSFFQRKEIKDVISYLRVVANPDDDINLLRIINTPRRG 405 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 G + + ++R N+ L+ + + D Sbjct: 406 IGKRTVEIISHIATEQKCSIRAAINN--------LLANSEGGSIKD---------KGLAD 448 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 + L+ + + + + + + + + + Sbjct: 449 VQSFADLISRHRKLL---------LSGKGLAQKVRKLVEEINYFDYLIQEYQKNEKAARY 499 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + L + N ++++ IT L + E + I+ + Sbjct: 500 KFLNIERLIQSIEEWEHNPDNFDVNLYDYLNRITLLTRDD---MNEEDKGEVQIMTIHAA 556 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN-GTR 695 + L F + + G EG+ P + ++ + I + F +A + Sbjct: 557 KGLEFPVVFIAGTEEGIIPHARS--------------MEENDGDIEEERRLFYVAITRAQ 602 Query: 696 HLIYTRSLRENNI-----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 +Y S R S +L+ + + + ++ Sbjct: 603 QKLYITSCRTRKKMGTFRECAPSPFLEEIPADLVHYHEPDAQAEAADIAKMFAQMKT 659 >gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] Length = 1125 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 75/806 (9%), Positives = 173/806 (21%), Gaps = 106/806 (13%) Query: 187 FLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHLMKGTKGPIIIAGSTGS 238 F + K + + + + G +++ + + Sbjct: 343 FANVFLKAYQAGKDARGWLDFDDLILRAKTLLTDPGVAQWVLFRLDGGIDHMLVDEAQDT 402 Query: 239 IPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 P ++ + A + D + + + Sbjct: 403 SPVQWDVIRLLTREFTAGQGARTNVLRTIFVVGDQKQSIYSFQGADPAGFDRMRQHFGTE 462 Query: 290 ---THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS----KSFLPPDTSDMRNT 342 LL R ++ + + + + Sbjct: 463 LAQVGTPLQERLLLFSFRSSRAVLRHVDETFSRFQHQGLGGGSEHIAFHEALPGRVDLWP 522 Query: 343 DILENKIPNIQKCFSDVALIEADNERE-EAISIAIALRMSLD---------------ENK 386 + + + Q V I AD+ R A IA +R L+ Sbjct: 523 ALAKAEKQTPQNWTDPVDKIAADDPRHVLARKIAAEIRRLLESGTQITSAKGETRPITPG 582 Query: 387 KKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI 446 L+ + + + I S + + L L +LL D MA+ Sbjct: 583 DFLVLVQKRSEIFHELIRACKTERLPIAGSDRLRVGAELAVQDLMALLAFAATPEDSMAL 642 Query: 447 ATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVP 506 A +++ PL + E ++ N + D L + Q + Sbjct: 643 ACVLRSPLCGWTQRELHVLAQPNRNRFLW--AALRDSDAHGETRAFLQDVRDQADFLRPY 700 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 R+ L+ + + Sbjct: 701 DLLERVLTRHGGRERLIARLGEEAEEGIDVLLDQALQYEQT------------------E 742 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 WF ++ ++ + + + + ++ ++ S Sbjct: 743 IPSLSGFVAWFRQDDMSIKRQIDARRDEIRVMTVHGAKGLEAPIVIMPDCAKPSNTNTRS 802 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 L L V++ + Sbjct: 803 KLLPLEDGPLVWAGNKETR-------------------PEVIKPRAEEIALRDTEERMRL 843 Query: 687 DFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLD 746 + + + E T + + +L+ Sbjct: 844 LYVAMTRAESWLIVAAAGETGTGT------DSWHAMVTEGIEAQTPHEVEFPTGTGLRLE 897 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD-- 804 + P P P + + + I + + D Sbjct: 898 HGVWPPDAPSPMPLHTAHSPQQPAFAPMPPMPERRNTRAP-SDLGGAKVIENAIEGLDKD 956 Query: 805 -RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 RG H ++ L L+ ++N D++ Sbjct: 957 AAQRRGKQIHLLLEHLPDHPPESWASLAPRLL-------GAEDNPETVADLLAEAR---- 1005 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESI-GIHLTGFADRIDLLKSGFVDITDYKTGD 922 LE+ + + + G + G DR+ + + D+K+ Sbjct: 1006 --GVLENPALEPLFAPDTLAEVSLTAPLPGLNGAQILGTVDRLIIGPE-RIVAVDFKSNQ 1062 Query: 923 --NPKKETAQKLIDPQLSLEAAALKA 946 E + + Q+ A AL A Sbjct: 1063 AVPAHPEDTPEGLLRQMGAYAEALAA 1088 >gi|218893377|ref|YP_002442246.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa LESB58] gi|218773605|emb|CAW29419.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa LESB58] Length = 1171 Score = 94.2 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 100/922 (10%), Positives = 240/922 (26%), Gaps = 73/922 (7%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L V R PL PL V ++ + Q L+ E + I + +V Sbjct: 25 LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82 Query: 86 ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +L P VS + + RL+ + L L+ Sbjct: 83 LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198 LA+ LAD+ D + W D + ++ + ++ W Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201 Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252 L ++ A S + + R E L + +++ G + T ++ +A Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261 Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H I ++ ++ Q++ L + Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321 Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346 R+ + L + + R+ + + E Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402 + P + + + A + + E + L + + + ++ D N Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441 Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + I ++ L LL I L+ P Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501 Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506 + F E L+ +E +R ++ L + + V Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + L + + L+ + + + L V Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + H + L + + L + +D + + + Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + + R + F + L G+N+G +P+ + F ++ + Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739 Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + + L + R +N S + +L + + G+ L + Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 QP +R P + ++++ + ++ + + Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHSEDDIAVPDAEAPLPPLELEGALG 857 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863 N + ++R+ + + + FE + L + Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 915 Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885 + + + + + V Sbjct: 916 VER--DWDAEGLPAQLQAQVER 935 >gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] Length = 830 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 80/728 (10%), Positives = 181/728 (24%), Gaps = 86/728 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + + P + T +A E+R + G ++ + + + Sbjct: 61 TAVLTRRIAYLLAERGVTP---GQILAITFTNKAAAEMRERVAALVGPRANAM-WVSTFH 116 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L LN + D + L L + Sbjct: 117 SSCVRILRAQAALLPGLN----------------SNFSIYDSDDSRRLLTMISKDLELDT 160 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 A+ LA I ++ E E+ ++ + ++ +RL Sbjct: 161 KRFS--ARLLATHISNLKNELVGPEEAVVAADQDPAE----LPRLIAKVYGHYQQRLRAA 214 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPN--- 254 NA + + +++ + A L+ + Sbjct: 215 NALDFDDLIGETVALLQAFPQIAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGAGESD 274 Query: 255 ----GAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 A + D + T ++ +P L + + Sbjct: 275 HAVAPAELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 329 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 +V ++ GR E ++ + ADNE +E Sbjct: 330 SAANSVISKNTGRR---------------------EKRLWTDSGEGELIVGYVADNEHDE 368 Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A +A L + A+ N +R ++ R G+ + G+ Sbjct: 369 ASFVASEIDRLVDQGETKFADIAVFYRTNNSSRALEEIFIRLGVPYKVVGGVRFYERKEV 428 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + + L + +D +++ ++ P G + + ++ Sbjct: 429 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGK 488 Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + IA+ + D++ L D L Sbjct: 489 VALLNTRSQKAIASFLEMMDGLRALLPTAAADEDEPFELGDIGEVAEAVLERTGYRAELA 548 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + L N+ L + + + Sbjct: 549 ASSDP------QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGS 602 Query: 605 WIDIITRL-IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPF 663 + R+ + + + + ++ ++ L F + + G +G +P A Sbjct: 603 LAAFLERVSLVADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP 662 Query: 664 LSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLG 723 + L + + A RS I ASR++Q + Sbjct: 663 AELSEERRLAYVGITR--ARQRLYLTRA-------IMRSAWGQPIQNPASRFIQEIPEDL 713 Query: 724 GTDFFDNL 731 ++ Sbjct: 714 INWRREDP 721 >gi|332142121|ref|YP_004427859.1| exodeoxyribonuclease V, gamma subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327552143|gb|AEA98861.1| exodeoxyribonuclease V, gamma subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 1206 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 90/760 (11%), Positives = 195/760 (25%), Gaps = 96/760 (12%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTI---LPIIKSLGDVV 85 TL+ D P TI V + + + G I LP V Sbjct: 19 TLLRQQPLDVFTPE-----TILVESPGMQHWVSMQMANKQGVAMNIDFPLP-------VR 66 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDL-----YPESPLSLPI 140 TA +L + P S +R + R+ + ++ Y +S S Sbjct: 67 FMWNTARTVLGADKVPKQSPYRREVLTWRIDNVLQDNALMDSDAFEQVNKYWQSAGSEQE 126 Query: 141 SPANAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAADFLKIASKYWT 196 + LA LAD+ + W E+ + W S+ W Sbjct: 127 QGLQRLQLATALADVYEQYLLYRPDWLFKWENNERAVFDDM-EVWQ---------SEIWR 176 Query: 197 ERLVELNASSPVG-YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 L + P +Q+ L EA ++ +I+ P +A H + Sbjct: 177 -ILAKDQPLHPARLHQMMLEALEAGNVPAHLPKRVIVFAINTMAPQLIAFFDALAQHIDI 235 Query: 256 AIVLPGLDCHIPTAIWNT---------------ITEKSTNITSSNTTYSTHPQYSLAKLL 300 I + ++ + E +N N ++L L Sbjct: 236 HIFHLNPSVNYWGEAKSSSEQAKLLRLEGLKKWMEEDQSNPLLGNLGKQGRELFNLLTEL 295 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVA 360 D +I D + S+ L +D+ + I + V Sbjct: 296 DTFEISAFDSPDFESAGEGEDEHGQCHSRGLLDYIHNDILQAAHPQPLIHQSKNKDDSVT 355 Query: 361 LIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK-LELTRFGI---- 411 ++ + E + L L ++ ++ R G Sbjct: 356 VMCTHSALREVQVLHDHLLHWLSQDKTRTPSDILVMCPAIENYAPFVDAVFHRVGTKSLG 415 Query: 412 -------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG------ 458 I+ P+ + +LL I ++ + Sbjct: 416 ATGQVRLPCTIADRSPMDAEPLIAAFMALLQLPDSRFGVSDILDYLQLDSVQKRFSVSQD 475 Query: 459 --FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + + + ++L ++ + S + D Sbjct: 476 DIEQMVVWLKQAHIHWGLNSAHKTAVSEGVNLDDTYSWWWGIRRLLMGMLAPDSEMIVSD 535 Query: 517 KELAVLL----VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 + + + I + + W+K + + Sbjct: 536 VLTIPDVEGQSALTLGKLIEVVALLGEFAQELTQPRTPEQWSKALIALRDAC------FM 589 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLF 629 P ++ ++ + + + + + L+ P + Sbjct: 590 PTKDQQQSWDLIAKVAADLAARCEEANYEHELTLRQVRDLLLNRFSSPDAGNHFMTGQVT 649 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AHDF 688 + L R + F + + GLN+ +P+ ++ L + + + ++ + F Sbjct: 650 VCSMLPMRSIPFKKVCILGLNDSEFPRKSSP---LGLDLMASDGRRVGDRSRRLEDRYLF 706 Query: 689 EMAN--GTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGG 724 A L + + NN S L + + Sbjct: 707 LEAIISTRESLYLSYQGNDVTNNSERQPSLVLAEFMDMLE 746 >gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] Length = 662 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 62/584 (10%), Positives = 150/584 (25%), Gaps = 87/584 (14%) Query: 177 YGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPII 231 W D K K + + L NA + ++ EH + I+ Sbjct: 149 GRKDWTNEHDSYKALYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPEVLAEYRERYRYIM 208 Query: 232 IAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH 291 + + M +A+ + D W + ++ + Sbjct: 209 VDEFQDTSTQQYNFMKLIADKN----ICVVGDDDQSIYSWRGASFENIRNFEKDFP---- 260 Query: 292 PQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPN 351 + ++IK E R + + VIS + + D Sbjct: 261 ---------EMIEIKLEQNYRSTGT--ILAAANGVISHNVNRKVKALWSEKDSGRP---- 305 Query: 352 IQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITADRNLARRVKLELTR 408 + + +NE EA I+ + ++ +L+R ++ Sbjct: 306 -------IEIFIPENEAAEADFISDMILSLKQREGFKYSDFGVLIRANSLSRPLEESFLE 358 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAK 468 I +S G L S L + +D + + ++ P G A Sbjct: 359 VNIPYRMSGGTSFFQRKEIKDLISYLRVVANPDDDVNLLRIINTPRRGIGKKTLETLSAL 418 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHIL 528 ++R + + P S ED + L+ Sbjct: 419 ATENSCSMRTAI------------------RLLLENPPEDMRGKSIEDLKEFAELISTHR 460 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + +++ +++ + + + ++ Sbjct: 461 TQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNI---------ESFLHSM 511 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + ++++ IT L +T E+ + I+ S+ L F + + G Sbjct: 512 DDWENNPDNLDGSLYDYLNRITLLTRDDT----EEEKGEVNIMTIHSSKGLEFPVVFIAG 567 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNI 708 +G+ P + + + + ++ S R+ Sbjct: 568 AEDGLIPHARSVEENDG-------------DVEEERRLFYVAITRAQQKLFITSCRQRRK 614 Query: 709 -----PTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDY 747 S +L + + + + D ++ Sbjct: 615 QGGITECAPSPFLDEIPADLVEYHEPDAQAEEERIADIFSQMKK 658 >gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] Length = 1130 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 97/922 (10%), Positives = 230/922 (24%), Gaps = 68/922 (7%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 A ++ ++F + P ++ VE L+ +P L +R Sbjct: 215 AFRQAAADFAGFMDGAAAAEPETVTI---VERLAEMATALANGPDPATPAGLVHLLTSRP 271 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 K + + L D + T A Sbjct: 272 HPDLCTKAGAFASYRRKGKWAAAAKQAGLSKADGDRLNDAAETHYTACCDAWAALAQAAA 331 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPI 230 + + D + + + + A + + + Sbjct: 332 GHAL--AALIDEARPILQRYRDHKRASAQLDFDDLIFAARDLLRDYDAVRRALGQRFVHV 389 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYST 290 ++ + P + + P P A++ K T Sbjct: 390 LVDEFQDTDPQQTEIFWRLCGEPVDGDDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGT 449 Query: 291 HPQ----YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS-DMRNTDIL 345 + Q + L I ++ V+S P T+ D + D Sbjct: 450 YVQARDAFRAQAPGSLLSISTNFRSCASILTFVNERFEAVLSADGQPGFTALDPFHDDRG 509 Query: 346 ENKIPNIQKCFSDVALIEADNERE--EAISIAIALRMSLDENK--------------KKS 389 + + +D ++ EA +IA ++ + Sbjct: 510 GPCVAALDIAVADENGKATAEQQRDAEAEAIAELCARLIENHPIIDRRSGAERACQPGDI 569 Query: 390 ALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 AL+ R + L R GI + AG L L +L + D +A+ L Sbjct: 570 ALLAPTGAELWRYEEALERRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGAL 629 Query: 450 VKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK-SLVLDRIATQKNNTHVPHW 508 ++ PL E+ L L + ++ + + +++ + + Sbjct: 630 LRGPLVG--LTEEDLLDIIWGLPRSEKQPDRIPRLDLGIDPAVIAHPLTREVIERLQSLS 687 Query: 509 QSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDE 568 + S L VD + L ++ N+ + L+ Sbjct: 688 RRGNSTTAHALLSQAVDVMRVRPLLLERHRGQAERALANVDLY--LSLSTGYAVRGLRAF 745 Query: 569 HRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL 628 + + W +E + + E + +A + ++ + +S+ + Sbjct: 746 AEAMTSAWSDEA-RAVEGRPDAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVIAAESAVI 804 Query: 629 FILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDF 688 + ++ + E + + Sbjct: 805 ---------------------DRQTETFYCPVLGVTPEGYETARQAEKEELDRERIRLWY 843 Query: 689 EMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYT 748 A R L+ L + + L L D + + + Sbjct: 844 VAATRARELLVLPRLDTTPSKSAWIGLVD--LSLADLPGLDVSRLPAGRTAASAGEDNTQ 901 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA------VYARRILKLDFIPHFKKD 802 T+ + + + + S + + + Sbjct: 902 TRASFAAEAETIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSADDQRPELEAAALV 961 Query: 803 PDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHK 862 +RG + H ++ E++ + + +I + + P + L Sbjct: 962 QGGRERGLILHKLMEEVLTGETAEAEAALTERAADLIRALGQAPVADPATGLSAEELAAC 1021 Query: 863 ISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF-VDITDYKTG 921 + + + + A + + + G AD + + + G V + D+K+ Sbjct: 1022 VVRTLALPDIAALRPGLLAEFPVYAAQSSDGVETATAGIADALTVGEDGRPVVVVDWKSD 1081 Query: 922 DNPKKETAQKLIDPQLSLEAAA 943 NP + Q+S Sbjct: 1082 VNP-EAQTLDHYRAQVSAYLDM 1102 >gi|328957497|ref|YP_004374883.1| ATP-dependent deoxyribonuclease subunit B [Carnobacterium sp. 17-4] gi|328673821|gb|AEB29867.1| ATP-dependent deoxyribonuclease subunit B [Carnobacterium sp. 17-4] Length = 1206 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 33/248 (13%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT- 828 S S ++ D Y + LKL F+ G FH+ + L K+ I KN Sbjct: 828 LSVSRLEAFYADHYGHFLTYGLKLQERDVFE--LSPAGTGEFFHDALDHLFKQIIQKNLS 885 Query: 829 --PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS----------FLEHEEKIQS 876 +++Q+ + P I+ K ++ + ++ Sbjct: 886 FDQLTEDMLEQLTSEVLTELYGKPKFSILNASNRMKYIRDQLGQTIKKMVWVIGNQSRRT 945 Query: 877 SIEKIFVNIPAK----------MAIE---SIGIHLTGFADRIDL--LKSGFVD-ITDYKT 920 +++ + + ++ +HL G DR+D L + + DYK+ Sbjct: 946 NMKNVQTEVLFGQVANQTGIEGLSFPLNNGGTLHLRGKIDRVDAMNLGDDYYLSVVDYKS 1005 Query: 921 GDNP-KKETAQKLIDPQLSLEAAALKAGSFSQID-CRKVANLFYIRLKQKFKIDCITNDK 978 + + A + Q+ + I K A FY+ + F D+ Sbjct: 1006 SAHKFNYQDAYYGLAMQMITYLDTALQNAVGLIGHEAKPAGAFYLHVSNPFMKKGTFLDE 1065 Query: 979 KKYSADEL 986 Y + L Sbjct: 1066 DAYINELL 1073 Score = 79.6 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 63/607 (10%), Positives = 172/607 (28%), Gaps = 56/607 (9%) Query: 154 DIIDIIETEEKKWEDLH----ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVG 209 D+ + + DL+ +L + L L + + + L+ Sbjct: 133 DLFLELRSGRIAQADLNHMMFSLGTSPKEADFKLKLQDLSLIYQAFDAALLNKY-IESED 191 Query: 210 YQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTA 269 AL++ E ++ I L+ + + D Sbjct: 192 IVSALIQKVEEL--DLSQTTFYIESYYQFTAQEQALILALMKAAKKVTIALTSDKAYAVE 249 Query: 270 IWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISK 329 + S Y L +L ++ K + V G + + Sbjct: 250 ---------KPEMHNLFQTSGATYYKLYQLARQNNVPVYKDKLIQEVDEAYCGELNQLEE 300 Query: 330 SFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSL---DENK 386 ++ T ++ + + + + A+N + E +A +R + + Sbjct: 301 FWVETSQ----LTPANNERVDGLDAMGNCIEIWAAENRQAEITHVAKEIRKLVATGNYRY 356 Query: 387 KKSALITADRNLARRVKLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMA 445 K ++T + + + L + I + + + ++ ++ SL++ + + Sbjct: 357 KDILVLTRNMDDYLAIIEPLFSSHDIELFVDSAELMNQHPLIEVIDSLVSIYKRNWRYAD 416 Query: 446 IATLVKHPLAKFGFPEKYLS--RAKNALELVALRGNKNSYDIMDLKSLVLDRIATQ---- 499 + L++ L + + + R + + ++++L Sbjct: 417 VMRLLRTELVIPKSEGEEVLSKERAQRVSQQVHRARQFRERVDVTENVLLSYGYEGYQWT 476 Query: 500 ------------KNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 ++ R+ + + L ++ L +T+K++ Sbjct: 477 KSDPWHYTRYFYEDAEFQSDNDQRIEQIANSIKTDLTGLLVPFFNRLEKAQTSKDAAKEL 536 Query: 548 LSISD--WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEW 605 + K + ++ ++++ E+ +T L + +E N + Sbjct: 537 YVFMENIGVKDQIGFWRDQAIEDNDLEEARKHEQTWQTFLQLLDEYVEVLGEEPFNLDSF 596 Query: 606 IDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 I+ D T + G +R+ + G+ + P T L+ Sbjct: 597 YAILMTGFDNATYSMVPPSIDQVTFSGIEGTRIGTAKVTFMLGVTDAHLPAKTENKSILT 656 Query: 666 RVMQSDLNL---------KTAEKYIGQAAHDFEMAN--GTRHLIYTRSLRENNIPTIA-S 713 + + T E + A + LI++ + S Sbjct: 657 EEDRDFFSQFLDDTKYLKPTVEAVMASEPFIAYQAFLDSSEKLIFSYPTSDETKNGPKLS 716 Query: 714 RWLQRLL 720 ++ R+ Sbjct: 717 PYVDRIA 723 >gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1055 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 84/744 (11%), Positives = 194/744 (26%), Gaps = 74/744 (9%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFT--ADLLLSYNLNPPVSNIQ 107 T +A E+R ++ GK+ T + + + A L+ + Sbjct: 79 VTFTNKAANEMRERLTKLIGKERTSQLRMGTFHALCARFLRKYAHLVKLAENFTVCDAEE 138 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 + L+ + L DL P + S + A ++ + ++ + E++ Sbjct: 139 SKKIIQALLKPYTAYLASENLDL---QPGRVVSSISKAKSKEQSGSVFLEEVIKAERRIR 195 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 + L + + + L NA ++ ++ Sbjct: 196 QRNGLPLGDDVEEKKTIDRIIGEIFLEYEKTLKRNNALDFDDLLTYGVKLFTKNDETVIW 255 Query: 228 -GPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 I++ + +LM +A IV D W + + + + Sbjct: 256 CRHILVDEFQDTNITQYKLMRALAIARCVTIV---GDPDQSIYGWRSAEVGNLSKMRRDF 312 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 + L + +K + ++ R + P + + Sbjct: 313 PDTEQ-----VLLEENYRSTAAILKASLAIISQDKSRIQKSLHTSHPNGFTPV------- 360 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK-----KKSALITADRNLARR 401 L + E EEA IAI ++ + ++ L+R Sbjct: 361 --------------LYQVQTEHEEAAFIAIEMKRLVAHMGGALNWGDFVILLRFNALSRV 406 Query: 402 VKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPE 461 ++ L + GI + G L L + L + N A V P G Sbjct: 407 IETALQKEGIPSRVLGGHKFFERLEVKDLLAYLQVVDNPNFVPAFKRAVNVPGRGIGEKT 466 Query: 462 KYLSRAKNALELVALRG---NKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + D+K V ++A Q+ S + Sbjct: 467 VAELIGRAEKSNQSPLAIVEAICDNKAPDIKPAVKRKVAPFVTAIRSLRAQAHNSSSPAD 526 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 L LVD I + SDW + + Sbjct: 527 LVRKLVDLIKY-------------EDHLKKTQSDWESRWENVKELITFASEM-------- 565 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITR--LIDGETVKPKIEKSSTLFILGTLES 636 E + + I+ + + L + + + I + Sbjct: 566 EAQNQAEEAADAVAGGDNSIEMSTTPLRQFLQASMLSSEGDNQSEEGNKDKVTISTCHSA 625 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG--- 693 + L + +++ +++ +P +++ + + T + + + Sbjct: 626 KGLEWPVVMIPSVDQNTFPFYRSEDT--AEERRLLYVACTRAQSLLYVSRATTRMVAGET 683 Query: 694 -TRHL--IYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK 750 ++ L + L +N + + + Q++ D + + Sbjct: 684 KSKELSEFISSVLNDNGLKNEMAFFSQQIPFFTQEDRATIATVLQRPPPEEAEVQRRVAT 743 Query: 751 QPHYKRPKPFPPLEAQPRTYSFSE 774 R P + S Sbjct: 744 FERSGREHPMQIYWGGGHHVAPSR 767 >gi|160946301|ref|ZP_02093510.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270] gi|158447417|gb|EDP24412.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270] Length = 1152 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 34/220 (15%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S+++ + P++ + L+ D D GT H I + K N Sbjct: 771 VSISKLENFMRCPFSYFINYGLRAKERE--VYDFSPADYGTYCHKIFDDFFKGIFENNID 828 Query: 830 E---INHLMKQIIDSHFEKENLPPHIDIIWRHLFH--------KISHSF-LEHEEKIQSS 877 +++ ++ +K + + + I S + E+ + + Sbjct: 829 WNIIDREFIQREVEKLTKKMAEKSNFILESSPKYKYFSTITQKNIVESIEIMAEQVRRGN 888 Query: 878 IEKIFVNIPA--------KMAI-ESIGIHLTGFADRIDLLKSGF----VDITDYKTGDNP 924 + I L G DRID+ K G + I DYK+ Sbjct: 889 FVPTGFETEFGDESIKPITYTLKNGKEIKLVGKIDRIDVFK-GENFDFLRIIDYKSSKRD 947 Query: 925 -KKETAQKLIDPQLSLEA-AALKAGSFSQIDCRKVANLFY 962 + QL + A L S + K A LFY Sbjct: 948 IDLNQVYAGLQLQLFVYMNAILS----SNKERYKPAGLFY 983 >gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] Length = 770 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 80/692 (11%), Positives = 189/692 (27%), Gaps = 99/692 (14%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + + + + + D Sbjct: 53 QILAITFTNKAAAEMRERLGRLVGPAARGM-WVSTFHSMCVRILRTD------------- 98 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 +RL + + ++KD+ E + P NAI ++ + + Sbjct: 99 CERLGFSQGFTIYDDDDSKRLVKDIMAELNIDPKRWPVNAIR--SRISAAKNELIVPGVF 156 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH---- 221 ++ H A + ERL N+ + H Sbjct: 157 ADEAHD-----------PTAKVCARVYERLQERLRAANSFDFDDLLLYTYLLFKHHPDVL 205 Query: 222 -LMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + +++ + A + +A +V+ D W ++ Sbjct: 206 AAYQDRFKYLLVDEYQDTNHAQYEITKQLAAKNRNIMVV--GDDDQSIYSWRGADIRNIL 263 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 S +PQ KL + V + R Sbjct: 264 EFES-----DYPQARSVKLEQNYRSTGTILAAANAVVSHNRNRKAK-------------- 304 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNL 398 K+ +++ A +ER+E IA + + + ++A+ Sbjct: 305 -------KLFTEAGEGDKISVYMAPDERDEGRWIAGEIERLHGQGISYDETAVFYRTNAQ 357 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L R G+ I G + + L I D +A ++ P G Sbjct: 358 SRSLEDMLLRAGVPYRIVGGTKFFDRAEIRDVMAYLTLIVNPADDIAAKRVINVPRRGIG 417 Query: 459 FPEKYLSRAKNA-LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDK 517 A L L ++ + L++ +A+ T + + + + Sbjct: 418 RTTIEHIDAVAQTLHLTFMQAAQACIADETLRASTRSALASF---TGLIAEAGTYAGDLR 474 Query: 518 ELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWF 577 ++ ++D + + S N I ++ + ++ +DE P Sbjct: 475 KVIEAVIDKSGLIAALEAEHTDDAQSRVEN--IREFLSVVDEYIETHEVDESALPPE--- 529 Query: 578 EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESR 637 + + + ++I+ + + + + ++ S+ Sbjct: 530 ---------GVRLLADVRQLSPESMADFIEWVR--LRTDLDAAADADGHAVTMMTIHSSK 578 Query: 638 LLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHL 697 L FD + G+ E ++P + + + L + + L Sbjct: 579 GLEFDAVFSAGMEESLFPHTNSSHDEAGLEEERRLA-------------YVAITRARKKL 625 Query: 698 IYTRSLRE----NNIPTIASRWLQRLLVLGGT 725 T + SR++ + Sbjct: 626 YLTCAATRKMYGETNANPVSRFVGEIPSDLRH 657 >gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1] gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1] Length = 827 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 73/708 (10%), Positives = 172/708 (24%), Gaps = 107/708 (15%) Query: 50 YVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 T +A +E+ + + + I + + A Sbjct: 80 VTFTNKAAKEMLTRLSAMLPYNVRGMW---IGTFHGLCNRLLRAHYQA------------ 124 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 ARL ++ + K L I + E + Sbjct: 125 -----ARLPQAFQILDTQDQLSAIKRLCKQFNVDDERFPP--KQLMYFIAGCKEEGMRPG 177 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HL 222 D+ A + + + E+ + + H Sbjct: 178 DVVATDPDTRKK---------VELYQLYEEQCQREGVVDFGELMLRSYELLRDDVHLRHH 228 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVA------NHPNGAIVLPGLDCHIPTAIWNTITE 276 + I++ + + + +A + + A V+ D + Sbjct: 229 YQRRFQHILVDEFQDTNKLQYQWLKQLAGDDVGGRYESAASVIAVGDDDQSIYAFRGARV 288 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + L+ + + +N + Sbjct: 289 GNMADFIREFDVKNQI---------KLEQNYRSYSNILDCANALI--------------- 324 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALIT 393 N++ L + Q V + EA ++ EA + ++ + + ++ A++ Sbjct: 325 --SHNSNRLGKNLRTSQGPGEPVRIYEAPSDLAEAAWMVDEIKQLVKNDGFTRQEIAVLY 382 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R ++ L I + G+ + L + +D + +V P Sbjct: 383 RSNAQSRVIESALFNSRIPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFP 442 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G + + +L + L R Sbjct: 443 ARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDVLREQTQGRTLREI 502 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E E L++H + + S + + LDE + P Sbjct: 503 IETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFV-TQEGFGRDAVAMPLDEQQNAP 561 Query: 574 NLWF--------------EEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L +E + + + ++ + + ++ + L G+ Sbjct: 562 QLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFLVHAALEAGD--N 619 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + ++ S+ L FD + +GG+ E F D E+ Sbjct: 620 QAQAGQDAVQLMTVHASKGLEFDAVFIGGVEE---------GLFPHENAMMDRGGLEEER 670 Query: 680 YIGQAAHDFEMANGTRHLIYTRSL----RENNIPTIASRWLQRLLVLG 723 + A + + L + S + SR+ L Sbjct: 671 RLAYVA----ITRARKRLYLSHSQTRMLHGQTRYNVKSRFFDELPEEA 714 >gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2654] Length = 1119 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 94/848 (11%), Positives = 210/848 (24%), Gaps = 109/848 (12%) Query: 147 WLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASS 206 L ++ + E E + + + AL + DF + + ER Sbjct: 292 DLGDTAETLLALAEVVETEVDRVKALAVIDRT---VALHDFAHPFVRMYEERKARNGWLD 348 Query: 207 PVGYQIALMRAEAEH--------LMKGTKGPIIIAGSTGSIPATARLMSTVAN---HPNG 255 + + G I++ + + P+ R++ ++A G Sbjct: 349 FDDLILRASALLNASDVAQWVLFRLDGGIDHILVDEAQDTSPSQWRVIDSLAREFMSGEG 408 Query: 256 AI------VLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQ----YSL 296 A + D + P S Sbjct: 409 AHADREWSIFVVGDPKQSIYSFQGADPDEFASMRDAFDEKLRQIERPLQQMPLEYSFRSS 468 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGRSM-VISKSFLPPDTSDMRNTDILENKIPNIQKC 355 +L +D+ +DV LG + L P ++ + P Sbjct: 469 PAILTAVDVTLDDVDGLGGTKPHHRAFHGDRPGRVDLWPAIEPVKEDEPRPWDDPLDVAA 528 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDE-------------NKKKSALITADRNLARRV 402 +D + A+N E IA + L+ +L + Sbjct: 529 PTDHTVQLAENIAGE---IARMIEEEHVPATEKGETGFRPVVPGDILILVQRRSDLFHHL 585 Query: 403 KLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEK 462 G+ I + + + + LT+LL+ + D +++A++++ PL E Sbjct: 586 IRACKSRGLPIAGADRLRIGGEMAVKDLTALLSFLATPEDNLSLASVLRSPLFGLSEDEL 645 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 Y L + +++ S + D+ + + +R L L Sbjct: 646 YRLAYGREGYLWRALWDSGHRRVVEALSDLRDQADFLRPYDLIDRVLTRHDGRRLLLGRL 705 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 + L + +L+ W + E Sbjct: 706 GAEAEDGIDAMLAQALAYERVEVPSLT----------------------GFLTWLDTEDV 743 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + + + + ++ ++ T +P + S + L + Sbjct: 744 EIKRQMDSDAREIRVMTVHGAKGLESPIVILPDTTKRPVRDLSDLVV---------LENN 794 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 + + K ++ + + L M LI + Sbjct: 795 VVWRPAAPDMPSVLALKKEEARTKGAEERMRLL-----------YVAMTRAESWLIVAGA 843 Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPP 762 + + L R + D+ + Sbjct: 844 GDVGKEASDSWHGLVRDGLTKLDAVPRGFPSGTGGLRFQVG--DWPAGERRNVTADADRE 901 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR-GTLFHNIITELIK 821 + + + + P + + K+ D D R G H ++ + Sbjct: 902 PDPPDWSLVAAPHRDPAPKPISPSDLKGAKVVPGAVEGLDGDAAKRRGRQIHRLLE-FLP 960 Query: 822 KRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 ++ P + + L + + L+ + Sbjct: 961 TYPREDWPATARALLAFGEDAASDAELAELLAEA---------TAVLDSPALAPLFERGV 1011 Query: 882 FVNIPAKMAIE-SIGIHLTGFADRIDLLKSGFVDITDYKTG--DNPKKETAQKLIDPQLS 938 + S L G D + + V D+K+ + E + I QL Sbjct: 1012 LSEVEITGPAGSSGEKRLHGIIDLLVIEPD-RVLAIDFKSNLTEPDAAEAIPEGILAQLG 1070 Query: 939 LEAAALKA 946 +AL A Sbjct: 1071 AYESALSA 1078 >gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] Length = 759 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 89/706 (12%), Positives = 205/706 (29%), Gaps = 126/706 (17%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 54 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P G R+ A ++N + + + Sbjct: 412 EPKRGVGPGTLEKIRS----------------------------FAYEQNMSLLDSSSNV 443 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 444 MISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 +++ TR+L +R+++ + Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDELIQHQGLARP 652 >gi|315181035|gb|ADT87949.1| exodeoxyribonuclease V, 125 kDa subunit [Vibrio furnissii NCTC 11218] Length = 1173 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 101/931 (10%), Positives = 235/931 (25%), Gaps = 110/931 (11%) Query: 48 TIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQ 107 I V + Q L+ + G + + L + +L + + Sbjct: 34 QILVQSPGMSQWLKMALAQELGVAANLD---FPLPATFIWEMFTQVLPNVPKRSAFNKEA 90 Query: 108 RLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK-- 165 +L L+ D L + LA+ +ADI D Sbjct: 91 MTWKLMELLPS----QLDQDVFAPLRRYLQDDTDQSKLYQLAEKIADIFDGYLVYRPDWI 146 Query: 166 --WEDLHALKNEKYGMWWLLAA-DFLKIA-----SKYWTERLVELNASSPVGYQIALMRA 217 WE ++ W L ++ + + + + Sbjct: 147 AHWEAGESVAEIDGEHPWQPVLWKALYDYTLAQGQSHYHRANLYQSFIDALAHIDLTHD- 205 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN----- 272 E L + I G + P + + H + ++ H I + Sbjct: 206 --EALRAALPKRLFIFGISSLPPRYMDALKALGEHIDVHLMFTNPCQHYWGDIRDRKYLA 263 Query: 273 TITEKSTNITSSNTTYSTH-------------------------PQYSLAKLLDFLDIKR 307 + + + TH Q LL + Sbjct: 264 RVESQRRKQLVLHPNAETHTFTVAGEVSPLKGELDDYAGDELHTAQAVGNSLLASMGKLG 323 Query: 308 EDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTDILENKI---PNIQKCFS 357 D L S+ R ++ + + D L + P + Sbjct: 324 RDNLYLLAQSDNEEHELFIDVPRDSLLHQLQADILHLEEHQDDTLLDSSAHKPALPHGDR 383 Query: 358 DVALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLEL-----TR 408 + L + E + L + + ++ AD N + Sbjct: 384 SLTLHACHSPMREVEVLHDELLAMFDRDPELKPRDIIVMVADINAYSPYIQAVFGNAPGE 443 Query: 409 FGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEKYLSR 466 I IS + + L+ + L++ P +A+F Sbjct: 444 RFIPYSISDRTADQESPILNAFMQLVALPQSRCLASELLELLETPAMMARFALDASEFDT 503 Query: 467 AKNALELVALRGNKNSYDIMDLK-----------SLVLDRIATQKNNTHVPHWQSRLSEE 515 AK +E +R N + + + + ++ + Sbjct: 504 AKRWVEESGIRWGLNDATAQEFELPQTHQNTWQFGIARMLLGYAMPSSVGLFEAGGHAMA 563 Query: 516 DKELAVLLVDHILQCITPL-VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + + + T + I W +L + L + + Sbjct: 564 PYNEVQGMSAELAGKLAHFIDTISDYRQRLAQTQPIEAWRELLSSLLDDCFSVDLDGEMA 623 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L + TL++L ++ + G + + + G V + + + Sbjct: 624 L--KSIRDTLAALKEQLADAGYADAISPAIMGQYLHDKLSGTRVSQRFLAG-QVNFCTLM 680 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 R + F+ + L G+N+GV+P++ F ++ ++ M + Sbjct: 681 PMRSIPFNVVCLLGMNDGVYPRSMPPEGFDLMNGRTRPGDRSRRDDDRYL-FLEAMLSVQ 739 Query: 695 RHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQP 752 L + R +N + S + LL ++ + R ++ Sbjct: 740 HTLYISYVGRSIQDNTERVPSVLVTELLEYCQQNYCLAGDEALPSDESGARLIEQLQFTH 799 Query: 753 HYKRPKP-------------FPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHF 799 P + P + T S + + L + L L + F Sbjct: 800 AMVPFSPQAFLTDVGSYAKEWLPAALRQGTASGTFHRALDDYLLDAVYPLELDLVELQRF 859 Query: 800 KKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 + P F+ + + + + + + + L ++ Sbjct: 860 WRLP----VQYFFNRRLKVVFEPPLPVMEDDEPFALGGLASYQLRDALLDGLLNAPSAQA 915 Query: 860 FHKISHSFLEHEEKIQSSIEKIFV--NIPAK 888 ++ F ++++ + + + Sbjct: 916 RDEVLAQF--NKQQRAQGKLPVGAFGELEFE 944 >gi|54310115|ref|YP_131135.1| exonuclease V subunit gamma [Photobacterium profundum SS9] gi|46914554|emb|CAG21333.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9] Length = 1159 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 106/881 (12%), Positives = 218/881 (24%), Gaps = 106/881 (12%) Query: 20 EMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 +++ +LL + N +P P I V + Q L+ E G + + Sbjct: 11 DLLKSLLVELIRLNPLDNPFEPE-----QILVQSPGMSQWLKMELATSFGIAANLE---F 62 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 L K +L P S + +L+ + +L + + P Sbjct: 63 PLPATYIWKMFTQVLADV---PERSAFNKEAMTWKLMEVLPKQLGLPEFEPLKRYLENDP 119 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKW-------EDLHALKNEKYGMWWLLAADFLKIAS 192 S LA+ +ADI D +W E + L +E W + Sbjct: 120 ESL-KIYQLAEKIADIFDQYLVYRPEWIQQWEAGEIVAELGDEH---PWQPILWQ-ALYD 174 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEH--LMKGTKGPIIIAGSTGSIPATARLMSTVA 250 + + ++ + I + A L + + G + P ++ + Sbjct: 175 QTLALGQSPYHRANLYEHFIDTLDNYASSGTLPANLPKRLFVFGISSLPPRYLDALAALG 234 Query: 251 NHPNGAIVLPGLDCHIPTAIWNTITEKSTNI----------------------------- 281 H + ++ + I + Sbjct: 235 EHIDVHLMFTNPCRYYWGDIRDRKHLARLAANQRVTIKQLNVSSDGILHGDENVSDENVA 294 Query: 282 -----TSSNTTYSTHPQYSLAKLLDFLDIKREDVKRL-----------GNVSNEMYGRSM 325 ++ H LL + D L G V E Sbjct: 295 VLKDTDENHYDDEMHNDVVGNSLLASMGKLGRDNMYLLSEMQVNEVDAGFVDIEPDSLLH 354 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE- 384 I L + + I +++ + E + L + Sbjct: 355 AIQADILNLEDRQNDQILDSSDHKFPISDGDMSLSIHACHSPMREVEVLHDNLLAMFETE 414 Query: 385 -----NKKKSALITADRNLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLL 434 + ++ AD N + I IS LL Sbjct: 415 TAKGLKPRDVIVMVADINAYSAAIQSVFGNAPGNRYIPFSISDRTAEQENPILLAFMRLL 474 Query: 435 NAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALELVALRGNKNSYDIMDLK--- 489 + + L++ P F + K +E +R + + Sbjct: 475 TLPESRCNASELLELLEVPAVMNKFGFDSNSFEKIKRWIEEAGVRWGLDEKTACQFELPE 534 Query: 490 ----SLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPL-VTYKTNKNST 544 + + E L + + + + + Sbjct: 535 QNQNTWLFGIQRMLLGYAMPHDAGLFDGISAYEQIQGLDAELAGQLAGFIDSLISYREQL 594 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 +S WT L L + E L + L L ++ + G + Sbjct: 595 AQPQCVSSWTDLLNQLLDDFLAVELDGELVL--KSIRDNLHRLHEQLADAGYQSLISPAV 652 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 + + GE V + + + R + F + L G+N+G +P+N A F Sbjct: 653 LTQYLQDKLSGERVSQRFLAG-QVNFCTLMPMRSIPFKVVCLLGMNDGAYPRNIAPEGFD 711 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRSLRE--NNIPTIASRWLQRLLV 721 ++ ++ E + L + R +N + S + L Sbjct: 712 LMNGRTKAGDRSRRDDDRY--LFLEAIQSAQESLYISYVGRSIQDNAEKVPSVLVSEL-- 767 Query: 722 LGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIND 781 G L + ++ P + S + + Sbjct: 768 --IEYCQQGYCLEGDEALPVDQSAKRLKEELLVHHHPLVPFSPTAFSGDNPSFAAEWL-- 823 Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI-ITELIK 821 P A K + +P +D+G + + + Sbjct: 824 PAAARHGEANKAFQLTALDAEPMVSDQGLVLELAELQRFWR 864 >gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] Length = 1106 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 88/876 (10%), Positives = 196/876 (22%), Gaps = 113/876 (12%) Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170 LA L + + LA L ++ +E L Sbjct: 267 TLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLL 326 Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHL 222 A + + F + + R + Sbjct: 327 AAERARLIH------AFAGVFLPLYQARKASRGWLDFDDLIQRAKGLLTDPSVAQWVLFR 380 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274 + G I++ + + P +++ +A + D + Sbjct: 381 LDGGIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGA 440 Query: 275 TEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + L I R + G + Sbjct: 441 DVAAFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH 500 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE-- 384 + + P + F V L+ + A +A +R ++ Sbjct: 501 IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGV 560 Query: 385 ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 L+ ++ + + I + + L L L++ Sbjct: 561 QIPQPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSA 620 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL + D +++A +++ PL + E + E R + + Sbjct: 621 LLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPGTVAI 678 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 L + Q + R LL + + + + Sbjct: 679 LRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLSQALAYERT----- 733 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W + + + + + + ++ + Sbjct: 734 -------------DVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVI 780 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + E+ + G + E A+ +R +L Sbjct: 781 LPDTADRKPRERDELFTLEGGA--------RVWKTPAAESPPQIAAAREARRARDAAENL 832 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 L +A + A L R + + Sbjct: 833 RL-------------LYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGA---ERR 876 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 G LD + + + P A+ + L Sbjct: 877 DDGALVLDEGLWPPAAPQASAAAAAARPVLPAWALAPAAEPPAAPEVLSPSALGGAKALP 936 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 D +P + G+ H ++ L L+ + D Sbjct: 937 GDAMPTEE----ALAHGSAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP--------- 983 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + + L E ++ + + + + L+G DR+ + Sbjct: 984 -------VLAEARAVLSAEHLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD-R 1033 Query: 913 VDITDYKTGD--NPKKETAQKLIDPQLSLEAAALKA 946 V DYKT + E + I Q+ A AL Sbjct: 1034 VLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 1069 >gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] Length = 1157 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 97/841 (11%), Positives = 195/841 (23%), Gaps = 78/841 (9%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174 L I + ++ L+ LA ++ I+ E+ + Sbjct: 307 LDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAEQSAKQ--GSAR 364 Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 Y AA+ L W ++ + Sbjct: 365 FDYADLIARAAELLVDPGAAWVLYKLDGGIDHI--LLDEVQDIAPAQWEVIDAIVAEFFA 422 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 TG+ TAR + V + G D A I + + + S + Sbjct: 423 GTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWHEGSLATSF 482 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L K + + + + + + Sbjct: 483 RSTAPILSLVDKVFERGPARSGVVMPDEVLAHGASRAGQAGSVTLWPLVPADPDPELAAW 542 Query: 355 CFSDVALIEADNEREEAISIAIAL-----------RMSLDENKKKSALITADRNLARRVK 403 ++ +A R A S+A + R + L+ + Sbjct: 543 APAETYAEQASARRRLARSVAGWIAANVGTMRLESRGRVLAPGDILILVRQRNEFGVALT 602 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L G+ + + L+ T + L +L A+ D + +AT++ PL E Sbjct: 603 RALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVELATVLASPLGGLSDEELM 662 Query: 464 LSRAKNA--LELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 L + L+ + A T + L A Sbjct: 663 NLALDRKGTLRDALFTRADEHAAFAAARDLIAEAQARADFVTPYRFFAEVLGP-MGGRAR 721 Query: 522 LLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 LL + PL + + S + + Sbjct: 722 LLARLGPEAAEPLDELLATALDYGTHEAPS------------------LQGFLAALDAAA 763 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + ++ + + + + ++ T + E L+ + + Sbjct: 764 AEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDLLYWIDAPQGGG--- 820 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTR 701 P + S ++ L + + + + Sbjct: 821 -----------EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVC 869 Query: 702 SLRENNIPTIASRW------LQRLLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYT 748 + + +RL + + L D + Sbjct: 870 GAATKSRLPETCWYESVRAGFERLDGVAEIEAEPPLDGTMLYYAAPQSAPPDRLAAISTA 929 Query: 749 TKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRT 806 T P P A P I +L+ A L + Sbjct: 930 TAAPLPGWIGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAM 989 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHS 866 RG L H ++ L + Q + + + Sbjct: 990 ARGRLIHALLQHLPDLPPGDRREAARRYLAQPGHRLGD----------VEQTDVIDAVFG 1039 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 L+H + P +A G+ + G DR+ +L V I DYKT P Sbjct: 1040 VLDHPDLTALFGPASRAEAP--IAGIVGGVEIGGLIDRLAVLPD-RVLIADYKTDRQPPA 1096 Query: 927 E 927 + Sbjct: 1097 D 1097 >gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] Length = 1074 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 96/756 (12%), Positives = 194/756 (25%), Gaps = 107/756 (14%) Query: 230 IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS 289 I I + P L+ +A A + P ++ K + + Sbjct: 364 IFIDEFQDTDPVQGELLLFLAEEEKSAAKVWNEIKLAPGKLFVVGDPKQSIYRFRGADIT 423 Query: 290 THPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 + ++ L I + + P ++ Sbjct: 424 AYQLFTELILKQGGMICYLQTNFRSDAQIIDFVNCAGFKLIEERPGFQAKYVPINAKDGA 483 Query: 350 PNIQKCFSDVALIE-----ADN-EREEAISIAIALRMSLDE---------NKKKSALITA 394 P + DV + AD+ +A A + + + K A++ Sbjct: 484 PCDKDAVKDVIISSEQPQSADDYRHNQAEFTAKWIAENAGKLKLSNGSVLQYKDIAVLMR 543 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 N L R+G+ + T + + +LL+ + D A+A +++ P Sbjct: 544 TSNAFNIFTEALKRYGVKYTVEEDKNFYTAQEITDILNLLSLLDNPYDKNALAGVLRSPF 603 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 F ++ ++ + ++ Sbjct: 604 GGFN------------------------------------------DDEIYQIFKQKFTD 621 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTC-LQNVCLDEHRKLP 573 + + + L T K + T+ L + + + + Sbjct: 622 ISAKKLPKGFERLGGFYKTLNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTIS 681 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 NL E + + D+ + E S + ++ Sbjct: 682 NLQKFAALAAGDQN-----ENANSLGQFLANSKDLARQARGEGESPLADEFLSAVSVMTI 736 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG----------- 682 +S+ L F + L + K + M A+ + Sbjct: 737 HKSKGLEFPVVFLADMFRQESVKQNKYSYSWFYDMHGLRAGPYADANLAFLEVQQLWHSK 796 Query: 683 --QAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 +A + + ++ T +R L+ + L + Sbjct: 797 SEEARILYVALTRAKEKLFILGNNTETKKT-PARHLRNAGLWPELVTVKELPNDKLTHPL 855 Query: 741 WTRKLDYTTKQPHYKRPKPFPPL--------EAQPRTYSFSEIKQLINDPYAVYARRILK 792 Y + P E R SEI + I + + L Sbjct: 856 QLEYFPYAEPDQFIYKINFTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEALFISPSSLN 915 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + GTL H ++ K I + QI D+ KE Sbjct: 916 KHEAVFAGSSDNAALLGTLCHKMLENYDFKTVITPEQTAASAASLQIEDNDIIKE----- 970 Query: 852 IDIIWRHLFHKISHSFLEHEE-KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 +I ++F E K +S+ + +P E I ++G D I + + Sbjct: 971 --------AAEIINNFTVSEVCKKLASMRVLAREMPFTY-FEEGKI-ISGTVDVI-VEQE 1019 Query: 911 GFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKA 946 G + + DYKT P QL A+K Sbjct: 1020 GEIFVLDYKTDKTPDPSK----YALQLGAYKRAVKK 1051 >gi|238760479|ref|ZP_04621616.1| Exodeoxyribonuclease V gamma chain [Yersinia aldovae ATCC 35236] gi|238701321|gb|EEP93901.1| Exodeoxyribonuclease V gamma chain [Yersinia aldovae ATCC 35236] Length = 1028 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 71/680 (10%), Positives = 162/680 (23%), Gaps = 65/680 (9%) Query: 136 LSLPISPANAIWLAKNLADIIDIIETEEKKW-EDLHALKNEKYGMWWLLAADFLKIASKY 194 LS LA +AD+ D +W + + L + Sbjct: 20 LSDDDDKRKIHQLAARVADLFDQYLVYRPEWLDSWERGQLIDNLDEAQQWQALLWVELTR 79 Query: 195 WTERLVELNASSPVGYQIALMRAEAEHLMKG--TKGPIIIAGSTGSIPATARLMSTVANH 252 +T +L + +R E + + I G + P + + + H Sbjct: 80 YTRQLEQPEW-HRANLYQRFIRTLHESDVCPVGLPKRVFICGISALPPVYLQALQALGKH 138 Query: 253 PNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYS-------------------THPQ 293 + ++ + I + Q Sbjct: 139 IDIHLMFTNPCRYFWGDIQDYAFLAKLQSRKRRHYRESIELNLFRNPEQAEQLFNADGEQ 198 Query: 294 YSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSD 338 LL D L + +++ + + Sbjct: 199 DLTNPLLASWGRLGRDHMFLLSQVDDIQEVHAFVDIEPDNLLQGIQHDILELEDHAVIGT 258 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI----ALRMSLDENKKKSALITA 394 T + ++L + + E + L + + + ++ A Sbjct: 259 SPETLAHSGGKRLLALSDRSLSLHVCHSPQREVEVLQDSLLGLLAANPELTPRDIIVMVA 318 Query: 395 DRNLARRVKLE-----LTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATL 449 D + + IS +LL+ + L Sbjct: 319 DIDSYTPYIQATFGNASGERYLPFAISDRKASQAHPALQAFITLLDLPQSRFTSEHVLAL 378 Query: 450 VKHPLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQK 500 + P F E L R ++ + +R + ++ +L + Sbjct: 379 LDVPALANKFGIAEDDLRRLRHWVGESGIRWGLDDDNVRELSLPATGQHTWHFGLTRMLL 438 Query: 501 NNTHVPHWQSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVT 559 + + L + + L+ + +S+W L Sbjct: 439 GYAMDSTAGDWQGVLPYDESSGLAAELAGQLADMLMQLSQWRQRLSEPRVLSEWLPLCRQ 498 Query: 560 CLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVK 619 L ++ L E + + S I + D + +D E + Sbjct: 499 LLDTFFEPDNDTEAVLVLIE--QQWQKVISYGIAAQYPERVPLNLLRDDLAGRLDNERIS 556 Query: 620 PKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEK 679 + + + R + F + L G+N+GV+P+ F +M + + Sbjct: 557 QRFLAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMAKQVRRGDRSR 613 Query: 680 YIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCY 738 E + L + R + + L+ + + G + Sbjct: 614 RDDDRYLFLEALISAQQQLYISYIGRSIQDNSKRYPSV--LVSELIEYISQSYRLPGDEW 671 Query: 739 LDWTRKLDYTTKQPHYKRPK 758 L + P+ Sbjct: 672 LSADDSAGRVIEHLLCWHPR 691 >gi|302533531|ref|ZP_07285873.1| RecB family exonuclease [Streptomyces sp. C] gi|302442426|gb|EFL14242.1| RecB family exonuclease [Streptomyces sp. C] Length = 294 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 80/283 (28%), Gaps = 32/283 (11%) Query: 751 QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGT 810 ++P + S S + P R I +L RGT Sbjct: 3 TTPGAGSADASSGASRPTSLSPSRAGDFMQCPLLYRFRVIDRLPEK-----PSAAATRGT 57 Query: 811 LFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID----------IIWRHLF 860 L H ++ L ++ T + + W Sbjct: 58 LVHAVLERLFDHPAHERTVPRAKELLPGQWERLLEAKPELAELFPEGDGGAGLARWLSEA 117 Query: 861 HKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKT 920 + + E+ + +E + + +ES G+ L G DR+D+ +G V I DYKT Sbjct: 118 EALVERWFTLEDPTR--LEPVEREFFVEAELES-GLRLRGIIDRVDVAATGEVRIVDYKT 174 Query: 921 GDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 G P+ + Q+ A + + L + L + Sbjct: 175 GKAPRP-EYAEGALFQMKFYALVVWR-----LRQVVPRRLQLVYLGSGDVLTYDPVPAD- 227 Query: 981 YSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSE 1023 E+ + L + ++ + R ++ + Sbjct: 228 ------LERVERKLYALWEAIREATETGDWRPRPTK-LCGWCD 263 >gi|253687308|ref|YP_003016498.1| exodeoxyribonuclease V, gamma subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753886|gb|ACT11962.1| exodeoxyribonuclease V, gamma subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1132 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 116/978 (11%), Positives = 244/978 (24%), Gaps = 125/978 (12%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 +L +VE + PL I V + Q L+ E G + I L Sbjct: 11 DILKRLMVELIKRQPLA-DPFQQEVILVQSPGMAQWLQIELAGHFGIAANIQ---FPLPG 66 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 V +L S +L L+ L + L + Sbjct: 67 VFLWNMCRHVLPDIPKESAFSKDAMTWKLMHLLP----DLLEQPDFSALNHYLQDDDNQR 122 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVEL 202 LA +AD+ D +W + L L A +T L + Sbjct: 123 KLHQLAGRVADLFDQYLIYRPEWIKAWQEGKQVDDLGGNQLWQSALWRALVDYTRELAQP 182 Query: 203 NASSPVGYQIALMRAEAEHLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLP 260 + A + P + I G + P + ++ +A H + ++ Sbjct: 183 EWHH-AILYQRFINALEQAKTCPKGLPPRVFICGISALPPIYLQALNALARHIDVHLLFT 241 Query: 261 GLDCHIPTAIWN------------------------TITEKSTNITSSNTTYSTHPQYSL 296 H + I + T + Q Sbjct: 242 NPCRHYWSDIQDYKFLAKLKARNRRLHRFDGVQTDETRPLFLDPGQAETLFNDDGNQLIN 301 Query: 297 AKLLDFLDIKREDVKRLGNVSNEMYGR---------------SMVISKSFLPPDTSDMRN 341 LL D L + + I + + Sbjct: 302 NPLLASWGKLGRDNLYLLAELDNVQEVGAFVESDGENLLQTLQRDILELEDHAVVAVSHE 361 Query: 342 TDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRN 397 T + + V + + E + L + ++ + ++ AD + Sbjct: 362 TQNSSMQKRLLALDDRSVDFHACHSPQREVEVLHDRLLAMMADDPQLMPRDVIVMMADID 421 Query: 398 LARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + + + IS + SLL+ + L++ Sbjct: 422 SYTPFIQAVFGNAPDKRYLPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEV 481 Query: 453 PLA--KFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNT 503 P +FG E+ L R + + +R + ++ DL + Sbjct: 482 PALAARFGIQEEGLRRLRLWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYA 541 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + L+ + + L+ + + DW L ++ Sbjct: 542 MDSQVGDWQGVLPYDESSGLIAELAGQLAELLMQIHQWRQRLSQPRVLVDWLPLCRELIE 601 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + L E+ + + + D ++R +D E + + Sbjct: 602 TFFDADSETEAALALVEKQWQYVIGMGTMAHYPQQVPISR--LRDELSRRLDQERLSQRF 659 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + + R + F + L G+N+GV+P+ F +M + + Sbjct: 660 LAGA-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGF--DLMGRKIKRGDRSRRDD 716 Query: 683 QAAHDFEMANGTR-HLIYTRSLRENNIPTIASR---------WLQRLLVLGGTDFFDNLK 732 E + L + R T ++ + VL G + D Sbjct: 717 DRYLFLEALLSAQYKLYISYIGRSIQDNTRRYPSVLVSELTEYIAQSYVLPGDETLDIDS 776 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPR------------------------ 768 + R+ P P P A Sbjct: 777 SAERVMKHLCREHSRMPFDADNFLPAPQPLSFAAEWLAAANRKGEAQPDFDREALSERTT 836 Query: 769 --TYSFSEIKQLINDPYAVYARRILK----LDFIPHFKKDPDRTDRGTLFHNIITELIKK 822 S ++K+ P + + L L ++P D + L Sbjct: 837 DSDVSLDDLKRFYRHPVRAFFQLRLGVSFMLHSDELLDEEPFVVDSLNRYQLNSELLNTL 896 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 +T ++ + E I+ + +++ + Sbjct: 897 INEGDTEKLYRRARAAG------ELPYGAFGEIYWQEQQQEMAQLAA---RVRDELTPSL 947 Query: 883 VNIPAKMAIESIGIHLTG 900 + ++ I G+ ++G Sbjct: 948 S-VSREVDILLDGVRVSG 964 >gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] Length = 1157 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 94/840 (11%), Positives = 195/840 (23%), Gaps = 76/840 (9%) Query: 115 LILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN 174 L I + ++ L+ LA ++ I+ E+ + Sbjct: 307 LDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAEQSAKQ--GSAR 364 Query: 175 EKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAG 234 Y AA L W ++ + Sbjct: 365 FDYADLIARAAQLLVDPGAAWVLYKLDGGIDHI--LLDEVQDIAPAQWEVIDAIVAEFFA 422 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 TG+ TAR + V + G D A I + + + S + Sbjct: 423 GTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWHEGSLATSF 482 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L K + + + + + + Sbjct: 483 RSTAPILSLVDKVFERGPARSGVVMPDEVLAHGASRAGQAGSVTLWPLVPADPNPELAAW 542 Query: 355 CFSDVALIEADNEREEAISIAIAL-----------RMSLDENKKKSALITADRNLARRVK 403 ++ +A R A S+A + R L+ + Sbjct: 543 APAETYAEQASARRRLARSVAGWIAANVGTMRLESRGRTLAPGDILILVRQRNEFGVALT 602 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 L G+ + + L+ T + L +L A+ D + +AT++ PL E Sbjct: 603 RALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVELATVLASPLGGLSDEELM 662 Query: 464 LSRAKN-ALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 AL + + ++ + + + + + A L Sbjct: 663 NLALDRKGTLRDALFTRADEHVAFAAARDLIAEAQARADFVTPYRFFAEVLGPMGGRARL 722 Query: 523 LVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGK 582 L + PL + + S + + Sbjct: 723 LARLGPEAAEPLDELLATALDYGTHEAPS------------------LQGFLAALDAAAA 764 Query: 583 TLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFD 642 + ++ + + + + ++ T + E L+ + + Sbjct: 765 EVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDLLYWIDAPQGGG---- 820 Query: 643 TLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRS 702 P + S ++ L + + + + Sbjct: 821 ----------EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCG 870 Query: 703 LRENNIPTIASRW------LQRLLVLGGTDFFDNLK-------KRGQCYLDWTRKLDYTT 749 + + +RL + + L D + T Sbjct: 871 AATKSRLPETCWYESVRAGFERLDGVAEIEAEPPLDGTILYYAAPQSAPPDRLAAISTAT 930 Query: 750 KQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKK--DPDRTD 807 P P A P I +L+ A L + Sbjct: 931 AAPLPGWIGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMA 990 Query: 808 RGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 RG L H ++ L + Q + + + Sbjct: 991 RGRLIHALLQHLPDLPPGDRREAARRYLAQPGHRLGD----------VEQTDVIDAVFDV 1040 Query: 868 LEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 L+H + P +A G+ + G DR+ +L V I DYKT P + Sbjct: 1041 LDHPDLTALFGPASRAEAP--IAGIVGGVEIGGLIDRLAVLPD-RVLIADYKTDRQPPAD 1097 >gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] Length = 805 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 83/727 (11%), Positives = 194/727 (26%), Gaps = 109/727 (14%) Query: 13 PSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKS 72 + R + +++ R + V T +A +E+++ ++ G++ Sbjct: 52 AGTGKTRALTARIVHLLNTGRARPN--------EVLAVTFTNKAAREMKNRVGQMLGQQV 103 Query: 73 TILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYP 132 +P + + + V ++R EL L + D L Sbjct: 104 EGMPWLGTFHAIC-----------------VKLLRRHAELVGLKSNFTILDTDDQLRLLK 146 Query: 133 ESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS 192 + L + W A+ LA +ID + + + Y Sbjct: 147 Q--LVAAEGIDDKRWPARMLAGLIDGWKNRALTPDKVPTADAGAYNHR-------GPEIY 197 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK-----GPIIIAGSTGSIPATARLMS 247 + RL+ELNA+ + ++ H + I++ + A + Sbjct: 198 AQYQRRLIELNATDFGDLLLHMVTIFQAHPDVLAQYQRWFKYILVDEYQDTNVAQYLWLR 257 Query: 248 TVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 +A + D W + ++ P + KL Sbjct: 258 LLAQGHKNICCV--GDDDQSIYGWRGAEVGNILRFETDF-----PGAHVVKLEQNYRSTP 310 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNE 367 + V GR L + + V LI + Sbjct: 311 HILAAASGVIAGNEGR---------------------LGKTLWTEETEGEKVRLIGHWDG 349 Query: 368 REEAISIAIALRMSLDENK-------KKSALITADRNLARRVKLELTRFGINIDISAGIP 420 EEA I + + + A++ + R + G+ + G Sbjct: 350 EEEARWIGDEIESAQRGTRGLDPFSLDDMAILVRASHQMRAFEDRFLTIGLPYKVIGGPR 409 Query: 421 LSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP-LAKFGFPEKYLSRAKNALELVALRGN 479 L + + +D +A +V P ++ + R + + G Sbjct: 410 FYERLEIRDAMAYFRVVTSPDDDLAFERIVNTPKRGLGDKAQQKIQRTARDHGVNLVEGA 469 Query: 480 KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKT 539 + + ++ + ++D + Sbjct: 470 RILLAHDGIGGKGGAQLRLLVEGIDRWSSMLHGPRIEISEDDSVLDDGAVPL-------- 521 Query: 540 NKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIK 599 +L L +W ++ + E ++ Sbjct: 522 ---RVDYGPPEVSHVELAEMILDESG------YTGMWQNDKTPEAPGRLENLKELVKALE 572 Query: 600 --ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 N +++ ++ ++D E + + I+ ++ L F + L G +G++P Sbjct: 573 GFENLQGFLEHVSLIMDNE----QEGDGEKVSIMTLHAAKGLEFPMVFLPGWEDGLFPSQ 628 Query: 658 TAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN--IPTIASRW 715 + + + +K E+ A A + + + R + SR+ Sbjct: 629 RSMD---------ESGIKGLEEERRLAYVGITRAEQICTISFAANRRVFGQWQNAMPSRF 679 Query: 716 LQRLLVL 722 + L Sbjct: 680 IDELPEE 686 >gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 1137 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 90/839 (10%), Positives = 211/839 (25%), Gaps = 134/839 (15%) Query: 172 LKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------HLMK 224 L L A + E + A + ++ + Sbjct: 344 LLQPDEVPAVQDLIILLNQALTAYEELCQTRRVLDFSALEQAALNLLSDKNIPDLLWRLD 403 Query: 225 GTKGPIIIAGSTGSIPATARLMSTV---ANHPNGAIVLPGLDCHIPTAIWNTITEKST-- 279 +++ + L+ + + G ++ D W + Sbjct: 404 RRLSHLLVDEFQDTSARQMELLCRLLTGWSGDLGRSLMVVGDPKQSIYGWRQARVELFFQ 463 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDM 339 P ++ L + S + + V ++ + + Sbjct: 464 TRRQKRLPCPEAPPFTTLTLSTNFR----------STSTLIQWVNNVFGQTIMKAGERNG 513 Query: 340 RNTDILENKIPNIQKCFSDVALIEADNER----EEAISIAIA--LRMSLDENKKKSALIT 393 K Q +AL A + +EA +A L++ + ++ Sbjct: 514 VEFSEAVAKPDAKQGDPPQLALFTAADRSLGRKQEANWLARQVSLKVKNIAAGESIGILL 573 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 R L G+++ + G+ L +L L + + A+ +D +A A L++ Sbjct: 574 FTRRQLPAYLLACQNAGLSLRVREGLALYDSLAVQHLHNAVTALVHPHDDIAWAGLLQG- 632 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 P +L++ + E + + D + V + Sbjct: 633 -FAGPQPLGFLAQVADYQEEFWSKKLEACAVSNDCPAEVRQWWRVCAEAGKM-------- 683 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 L + + + Sbjct: 684 -------------------------------------VGRAPLHEILAEWLSTAGGWERI 706 Query: 574 NLWFEEEGKTLSSLFSKIIETGSC--IKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 W G + ++ ++ T + +A D++T+ + K + +L Sbjct: 707 AAWEGAAGVANARVYLDLLATAASCTPEATLARLTDLLTQAFQPADPRAKDSP---VEVL 763 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNL----------------- 674 ++ L FD + L + + PFL S Sbjct: 764 TVHAAKGLEFDHVFLPSGDWQPLLTGKSDTPFLMEETSSAGGAVIALNCAYAGKEQSLLY 823 Query: 675 -----KTAEKYIGQAAHDFEMANGT--RHLIYTRSLRENNIPTI------ASRWLQRLLV 721 ++ + +A F +A + L + ++ + WL++ Sbjct: 824 HTLRDLAKQRLLSEARRLFYVAVTRAKKSLQISGVIKTDKAGNCQFPANSPLGWLRQHYP 883 Query: 722 LGGTDFFDNLKKRGQCYL-----DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIK 776 G + + + L T + P P + S++ Sbjct: 884 DGELYPGQKSIWQPPPLPVSVFQEISELLLPTGETKTPPLPYDLQPELLPYKMQFPSQLS 943 Query: 777 QLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 + + + R + + RG + H ++ L + + +++ Sbjct: 944 GSEANNDSDQSNRFTSDEDTAGEEITL-ARLRGEIIHRLLETLSRGVPLPEPAAVASVLR 1002 Query: 837 QIIDSHFEKENLPPHIDIIWRH-LFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIG 895 S +L + + L+ +++ + + +S Sbjct: 1003 SAGVSAEYALDLADEMLAEVKACRDDPFLAPLLD------ANLPVVRSEWLVEAWQDSAT 1056 Query: 896 IHLTGFADRIDLLKSG-FVDITDYKTGDNPKK-------ETAQKLIDPQLSLEAAALKA 946 I G DR+ G + DYKT P + PQL Sbjct: 1057 IR-RGRLDRLVF--DGYQWWLLDYKTSRPPVGIDWETFLASETDAYRPQLLAYRELAAR 1112 >gi|163846878|ref|YP_001634922.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222524699|ref|YP_002569170.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] gi|163668167|gb|ABY34533.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222448578|gb|ACM52844.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] Length = 746 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 76/728 (10%), Positives = 186/728 (25%), Gaps = 112/728 (15%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L + ++PL + T +A +E+R + G+ I + + Sbjct: 37 VLTHRIAYLIAETGIDPL---QILAVTFTNKAAREIRERLNLLVGETVAHEITIGTFHAI 93 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 D++ +R + D + L L ++ Sbjct: 94 CTRWLRRDIVHL--------GRERDFVIYD---------SDDQERLMKRVLRELNLNEKQ 136 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNA 204 A + +I + E E + + + + L+E NA Sbjct: 137 YPPRA--ILGVISRAKNELVDPEAFARTARSYFDE-------IVARCYTRYQQLLIESNA 187 Query: 205 SSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVL 259 + +R EH +++ + A ++ +A V+ Sbjct: 188 LDFDDLLVETVRLFQEHPAILHHYHQRYRFLLVDEYQDTNRAQYLIVRALAERDRNLFVV 247 Query: 260 PGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE 319 D W ++ +P + L + + + + Sbjct: 248 --GDEAQSIYAWRGADIRNILQFE-----HDYPDARVILLEQNYRSTQAILDAAQALMHA 300 Query: 320 MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 R + + + V L EA +E +E + + Sbjct: 301 SPQRKYAKN--------------------LWTVNGKGEAVTLYEASDEEDEVQFVVDEIL 340 Query: 380 MSLDE---NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + E A++ +R V+ L G+ + G+ + + L Sbjct: 341 RLIAEGKARPGDCAIMYRTNAQSRLVEEALIHAGVPYYVVGGVRFYERKEIKDVLAYLRL 400 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 I D +++ ++ N + V + I Sbjct: 401 IANPYDSVSLQRII------------------------------NWPGRGIGERTVAELI 430 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 A + + R ++ ++ +T + + G +++SD Sbjct: 431 AWARTLGLPLYQALREIADNDAISHPFGGRARTALTEFYRLLSELHQLHGMMALSDLIDY 490 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L + + E + + + + + + + Sbjct: 491 L---LNRIDVRATLYSEYDGDEADDRWRNVQELRNAALKYVNLPVETQLTAFLEEIALVA 547 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 V S T+ + +++ L F + L G+ EG+ P + + + Sbjct: 548 DVDAIDRNSDTVTCITLHQAKGLEFPCVFLLGIEEGLLPHSRSLDN-------------- 593 Query: 677 AEKYIGQAAHDFEMANGT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 + + + R L + + + R L + +RG Sbjct: 594 RDSIEEERRLLYVGMTRAQRRLYLCHATKRTMFGRVNIGARSRFLNDIPPTLVQQVHRRG 653 Query: 736 QCYLDWTR 743 + Sbjct: 654 YRAIPAVA 661 >gi|219871827|ref|YP_002476202.1| exodeoxyribonuclease V subunit gamma [Haemophilus parasuis SH0165] gi|219692031|gb|ACL33254.1| exodeoxyribonuclease V, gamma subunit [Haemophilus parasuis SH0165] Length = 1085 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 73/752 (9%), Positives = 200/752 (26%), Gaps = 63/752 (8%) Query: 27 NGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVE 86 L+ NP + + V + Q L+ + + G + + Sbjct: 13 QKNLLTAILAKDPNPDPFSQEIVLVQSLGMAQWLQMQIAQEIGVAGNM--QFPYPTSFLW 70 Query: 87 EKFTADLLLSYNLNPPVSNIQR--LLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 +++ +L +L S ++ L L R+I + + Sbjct: 71 QQYR---VLFPDLPKENSFDRQSMLWRLMRIIPQFLE-----QPAFEALASYLNQGDQLK 122 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMW---------------------WLL 183 LA+ +AD+ D +W L + + W Sbjct: 123 QYQLAEKIADLFDQYLVYRPQWLVLWEKGQSQAVVDEIMRAVSFKQKNAKEIATNVAWQS 182 Query: 184 AA--DFLKIASKYWTERL-VELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP 240 + + E + + + + I + G + Sbjct: 183 ILWNALVADIKQDSDEAIFNTSHRAYLQQRYFDKLDNLTATEKARLPKRIFMFGISSLPH 242 Query: 241 ATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT--ITEKSTNITSSNTTYSTHPQYSLAK 298 + ++ ++ H N + + + + S + + Sbjct: 243 SQLAVLKKLSEHCNVHLFFTNPSMEYWANDREDKVLEKLALKDNLSEAELAELFEKQGNP 302 Query: 299 LLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP--NIQKCF 356 LL + ++ L + + P + ++ + ++ Sbjct: 303 LLTVWGKQGKEFLNLLTETGIQDISLYNHFEDKNPTLLTQVKKAILYSEHQTTFSLANED 362 Query: 357 SDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL------ 406 + L ++ E + L + +++AD + + Sbjct: 363 RSIQLHTCHSKMREVEVLYNQLLYLFETYPDLSPKDIIVMSADIDSYAPYINAVFSRYEK 422 Query: 407 TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPEKYL 464 R I +S + LL+ I L + + F E+ + Sbjct: 423 ERRYIPFTLSDQKISYINPIIASFLQLLSIKENKFSAEEILDLFDISAIREKYQFNEQKI 482 Query: 465 SRAKNALELVALRGN--KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVL 522 + + ++ V +R + + + S + + + + Sbjct: 483 NTLREWIKSVGIRSGLKIENPEWQNYNSWENGLNRLLLGTSLKAENNGWQNILAFDESYG 542 Query: 523 LVDHILQCITPLVTYKTNKNST-CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEG 581 L+ + + + T ++ C S+S W + T + + + + + + Sbjct: 543 LISELTGNLAKFIDNLTAWHAFICQPQSLSAWQEQLFTLVAQTYQENDQSIDAILTLQ-- 600 Query: 582 KTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNF 641 + + + +I ++ +++ T+ + + + L R + F Sbjct: 601 QAIRDVIEQIQQSHFEEAIGIDVMLELFTQQLSEQRSHLNFL-VGKVNFCTLLPMRAIPF 659 Query: 642 DTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYT 700 + L G+NEG +P+ N F ++ E + L + Sbjct: 660 KVVCLLGMNEGEFPRQQTINSFDLMQYAPQKGDRSRRDDDRY--LFLETLLSAQQMLYIS 717 Query: 701 RSLRE--NNIPTIASRWLQRLLVLGGTDFFDN 730 + ++ + S + +L + Sbjct: 718 YIGQSLTSSQEKLPSVLVTQLFDYLKENLPKA 749 >gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] Length = 1174 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 80/783 (10%), Positives = 170/783 (21%), Gaps = 61/783 (7%) Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 + E ++I + A + V+ + + + D + Sbjct: 381 YAKTELAQEAGALYDEVLIDEFQDTNAAQEIIFRAVSQNESN--LFMVGDVKQSIYRFRQ 438 Query: 274 ITEKSTNITSSNTTYSTHPQYS--------LAKLLDFLDIKREDVKRLGNVSNEMYGRSM 325 + + +L + + Sbjct: 439 AMPELFMEKKKRFAPYDGKTFPAKIVLGKNFRSAQAVTGCVNFFFSQLMSGEIGEVDYNQ 498 Query: 326 VISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAI-------SIAIAL 378 + S + L + D +EA + E+ +A Sbjct: 499 EEALSPGASFPEGIEAGCTLRLIDASQYAGELDSTQLEARDVAEQIAGMLERGDLVADGG 558 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIF 438 L+ + A+ LTR G+ + T+ + + +LL + Sbjct: 559 VTRRVRPSDICVLLRSPAQKAQAYFDALTRRGVPVWAEPKSGFLTSREIAPVVALLRVLG 618 Query: 439 KLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIAT 498 + A+ + PL E R + + + D ++ Sbjct: 619 NPTLDIDFASALLSPLFGLTADELTQIRLTDRR-APLYIAAAKAAEAGDPRAANAVDTIA 677 Query: 499 QKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTV 558 + + E + + + K Sbjct: 678 RLRRFASNATADAVIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLS 737 Query: 559 TCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID----------- 607 + V R + + I ++ + D Sbjct: 738 GFIGFVDRLIDRGGDFAPAASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLN 797 Query: 608 ---IITRLIDGETVKPK-------IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKN 657 ++ + V+ L S L ++ L Sbjct: 798 GNTLLHSELGFACVRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIV 857 Query: 658 TAKNPFLSRVMQSDL--------NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 + L L + A D+ + RH P Sbjct: 858 ITGVVTKPEELLCALVSESGTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAP 917 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 AS + D + +K + D + +R P EAQ + Sbjct: 918 LDASEAPLTFELKAAADGEPDAEKTSETT---AASPDEAALEALRRRLAFRYPFEAQTKI 974 Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIIT--ELIKKRINKN 827 + + QL YA A RG H + + + + Sbjct: 975 PTKMAVSQLAGSAYA--ASYRFSARPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDAS 1032 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 + + P + + + F + + Sbjct: 1033 GEIARMAREGFLSRQEADSIRPDRVRAFFSSRL--AARIFSAKQVWRELRFLAEAGEREL 1090 Query: 888 K----MAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + + G AD + L + G + DYKT + ++ QL+L A Sbjct: 1091 GAYSALFTNGGETAIQGVADCVFLEEDG-AVVVDYKTDRVKTPDELRERYRVQLALYRNA 1149 Query: 944 LKA 946 L Sbjct: 1150 LTE 1152 >gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183] gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183] Length = 639 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 84/691 (12%), Positives = 171/691 (24%), Gaps = 127/691 (18%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A +EL+ + + +P++ + + Sbjct: 52 EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162 + L R I + + I D L + + LA + + + Sbjct: 93 ----VFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQHNLKPNLASKIQAHVSQAKNR 148 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 EDL Y + + + ++L+E NA +R E Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198 Query: 223 MKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 ++I + A LM ++ V D W Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + ++ Y AK+L + + Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 N LE ++ +++ + L +REEA +A + + + Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + +R + L R I +I G+ + + L +D +A V P Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G + + + A Q+ S+ + Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E + + L I L ++ + + T E Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L E++ + L + + + ++ Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDLNLTADRVNLMTLH 553 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + L F L GL E + P + T E + + Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720 + L+Y RSL SR+L+ + Sbjct: 601 QDLLYLTTAQVRSLWGTVRMMKPSRFLKEIP 631 >gi|54025152|ref|YP_119394.1| hypothetical protein nfa31830 [Nocardia farcinica IFM 10152] gi|54016660|dbj|BAD58030.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 302 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 77/265 (29%), Gaps = 28/265 (10%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTP 829 S S P R I ++ P RGT+ H ++ +L + Sbjct: 29 LSPSRAMDFKQCPLKYRLRAIDRIPEPPSRH-----AVRGTVVHAVLEDLYGLPAAERGR 83 Query: 830 EINHLMKQIIDSHFEKENLPPHIDIIW------RHLFHKISHSFLEHEEKIQSSIEKIFV 883 + + + + E + + ++ + + + Sbjct: 84 DRAAALIEPAWARVLAERPEIAELVAEDGPAAFLAEVAALVDTY--YRLEDPTRFSPESR 141 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 ++ + G+ L GF DRID+ +G + + DYKTG P K + QL A Sbjct: 142 EARVEVELGD-GVLLRGFVDRIDVAPTGELRVVDYKTGRAPGPAQETKAL-FQLKFYALV 199 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + A L I L + + ++ + + E Sbjct: 200 VLR-----TRGILPAQLRLIYLADGQILTYAPDAEELDRFERTLAALWTAIREAGR---T 251 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028 GE P + +Y L Sbjct: 252 GEFP-----PSTSWLCGYCDYKPLC 271 >gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC 13813] Length = 766 Score = 93.8 bits (231), Expect = 2e-16, Method: Composition-based stats. Identities = 86/697 (12%), Positives = 206/697 (29%), Gaps = 126/697 (18%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 61 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 117 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 118 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 161 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 162 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 206 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 207 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 264 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 265 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 311 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 312 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 358 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 359 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 418 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P + + ++S ++ + + + + Sbjct: 419 EP-----------------------KRGVGPGTLEKIRSFAYEQNMSLLDAS-----SNV 450 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 451 MMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 507 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 508 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 567 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 568 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 613 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 +++ TR+L +R+++ + Sbjct: 614 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 650 >gi|297192223|ref|ZP_06909621.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|297151259|gb|EDY67267.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 348 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 63/271 (23%), Gaps = 15/271 (5%) Query: 29 TLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEK 88 TLVE + + + +++A ELR G P + Sbjct: 78 TLVEAVAARIAAGTDPSRILVLTFSRKAAVELRDRMALRLGG--ARGPQATTFHSYCYAL 135 Query: 89 FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWL 148 A + RLL + R L I P + Sbjct: 136 VRAHQDADL-----FAEPLRLLSGPEQDVTVRELLAGQIGLPGVRWP-DELRACLTTRGF 189 Query: 149 AKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPV 208 A + ++ + L W AA FL L Sbjct: 190 ADEVRAVLARSRELGLGPDSLARFAARTGRPDWGAAASFLAEYLDV----LDLQGVLDYA 245 Query: 209 GYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPT 268 + A+ + + + + PA RL+ +A G ++ D Sbjct: 246 ELVHRAV-LLADDVALPGYDAVFVDEYQDTDPAQVRLLRALAG--GGRTLVAFGDPDQSI 302 Query: 269 AIWNTITEKSTNITSSNTTYSTHPQYSLAKL 299 + + +A L Sbjct: 303 YAFRGADVNGILDFPEAFPRADGGPAGVAVL 333 >gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 829 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 65/710 (9%), Positives = 167/710 (23%), Gaps = 84/710 (11%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITG--KKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP 102 + V T +A +E+ + + + I + + A + Sbjct: 88 SGVLAVTFTNKAAKEMTARLSAMLPINTRGMW---IGTFHGLCNRLLRAHYRDAG----- 139 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + ++L+ + + L + D P ++ I+ + + Sbjct: 140 LPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQY--------------FINGAKEQ 185 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218 + DL + + + + Sbjct: 186 GLRAGDLEIANEFDRR---------MADLYAAYDAQCQREGVVDFSELLLRCYELLRYND 236 Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNT 273 + I++ + + +A + + D + Sbjct: 237 AIRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGVTPNAIFAVGDDDQSIYAFRG 296 Query: 274 ITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLP 333 + L+ + + +N + + Sbjct: 297 ANVGNMVDFEREFRV---------AHRIKLEQNYRSHGNILDTANHLIAHN--------- 338 Query: 334 PDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRM--SLDENKKKSAL 391 T L + V + + + +EA I +R + + + A+ Sbjct: 339 --------TRRLGKNLRTDAGHGEPVRVYPSATDGQEAGWIVEEIRERIASGTARSEIAI 390 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L GI + G+ + L + ++ A +V Sbjct: 391 LYRSNAQSRVIEHALFSVGIPYKVYGGLRFFERAEIKHALAYLQLLENPDNDAAFGRVVN 450 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P G + L V+L + L ++ Sbjct: 451 FPARGVGARSLEQLQDAAKLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLP 510 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + A L+ H L + + + + + + Sbjct: 511 EIVQHVIHASGLITHYQGEKEGLDRIENLQELVTAAQAF---VAEEGYGVDAIATALPMR 567 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + E G+T S ++++ + + + L G+ + ++ Sbjct: 568 HDAMLRIEGGETDSDAVTELVADETPTEMTPLVAFLTHASLEAGD--NQAQAGQDAVQLM 625 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + + GL EG++P + + L + + F Sbjct: 626 TVHAAKGLEFHVVFITGLEEGLFPHENSLLDTDGLEEERRLMYVAITRARERLYLSFAQ- 684 Query: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDW 741 +R L I SR+ L Sbjct: 685 --------SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHTGYSPTRRAQ 726 >gi|271967185|ref|YP_003341381.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM 43021] gi|270510360|gb|ACZ88638.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM 43021] Length = 295 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 81/267 (30%), Gaps = 28/267 (10%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S + P R I +L P RGT+ H+++ L T Sbjct: 17 ALSPSRAGDFMTCPLLYRFRVIDRLPEPPSP-----AAVRGTMVHSVLERLYDLPAPART 71 Query: 829 PEINHLMKQIIDSHFEKENL-------PPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKI 881 + + E+ W + + E+ +E Sbjct: 72 VAAAQELLEPQWHRLLAEDPAYGGMFADDREQAQWLAQAGSMLERYFTLEDPTC--LEPA 129 Query: 882 FVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEA 941 + + ++ G+ L G+ DR+D+ +G V + DYKTG P K + Q+ A Sbjct: 130 ERELYVEAVLD-NGLMLRGYIDRLDVAPTGEVRVVDYKTGSAPGPAFEAKAL-FQMKFYA 187 Query: 942 AALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLL 1001 L + L + L ++ D+ A E K I + Sbjct: 188 LTLWR-----LHGSVPRLLQLMYLGGGGEVLRYAPDEADLRATE--RKVQALWTAIERAM 240 Query: 1002 QNGEQPFISHLRLSEKSNIQSEYDHLA 1028 + GE P R S Y L Sbjct: 241 ETGEWP----PRPSR-LCDWCSYQELC 262 >gi|149198487|ref|ZP_01875532.1| exodeoxyribonuclease V, gamma subunit [Lentisphaera araneosa HTCC2155] gi|149138493|gb|EDM26901.1| exodeoxyribonuclease V, gamma subunit [Lentisphaera araneosa HTCC2155] Length = 1099 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 78/741 (10%), Positives = 182/741 (24%), Gaps = 64/741 (8%) Query: 18 FREMIPALLNGTLVENFRYDPL--NPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTIL 75 ++ L + E R + L P L + + ++ + + + + G + I Sbjct: 9 LEVLVSQLADSLQNEKCRPEELLGRPNDL----VIIQSRGMAKWIDMQIADHNGIATRIE 64 Query: 76 -PIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPES 134 P I++ + ++ S R+ +L I + D +K Sbjct: 65 YPFIRTF--ISSILVKCSYSPKEDIWDRESLAWRIFKLLPEIESKFTIIHDYVK------ 116 Query: 135 PLSLPISPANAIWLAKNLADIIDIIETEEKKW--EDLHALKNEKYGMWWLLAADFLKIAS 192 + LA+ LA +ID W + ++ Sbjct: 117 -----TNQLRRFQLAEQLASLIDEYMVYRHDWLQSWIQGKAFTQFNQGLEKELKHEAWQI 171 Query: 193 KYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANH 252 W + S Q L+ + + + I I G T P ++ Sbjct: 172 ALWQKLCESAQNSFQAALQNFLLADDIQPEVLELPPRIAIFGITNMPPVFVNFFEKLSQL 231 Query: 253 PNGAIVLPGLDCHIPTAIW---------NTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + I + + T+ LL L Sbjct: 232 TQVTLYHFNPCQEYWGDIRMERFSAFPLQGKDDLGLRGPIFSRTFENEIPDLPHSLLKSL 291 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 + D L + ++ + V + Sbjct: 292 GLLGRDFLNLLIENTSFDTLEHYAPSESSQLLHRIQNGILEMQEDFEDDLVTDDSVKISS 351 Query: 364 ADNEREEAISIAI----ALRMSLDENKKKSALITADRNLARRVKLEL--TRFGINIDIS- 416 + R E ++ +L + D + ++ + + + + +D S Sbjct: 352 CHSPRRELEALHDYLVGSLADNPDLRPQDIIVMAPNIHDYAPHIRNIFSNPDNMPLDFSI 411 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK----------FGFPEKYLSR 466 L + + + + ++P + Sbjct: 412 TDQELRGRPLVNSYLKIFELAKSRLSSNDLLEIFENPDFLSRYKLKVDDVHTIRDWIEQA 471 Query: 467 AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDH 526 + R + + P + ++ Sbjct: 472 RIRWGKDAQQRADWELPEFEQNSWKFGFDRLLAGYAFDDPELYDSILSCPIGGDGAILGK 531 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 I L + + T S+ +W + L++ N + E + + Sbjct: 532 IKTAADQLFSI--YEIITQEEKSLQNWCEYFSFVLKS------NFEENADNQNEYNIILT 583 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS---STLFILGTLESRLLNFDT 643 K+ E ++ N + +I + ++ + + L R + Sbjct: 584 QLQKMSERADLLQMNEVIAAEIAIKSLNSALEEQSSSHGFISRGITFCSLLPMRSIPVKV 643 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIYTRS 702 + + GLNEG P+ ++ F +M + + E R L + Sbjct: 644 ICMLGLNEGQLPRTNHRSGF--DLMNKNWRQGDRTMSLDDRYLFLESLVSAREKLYLSYV 701 Query: 703 LRE--NNIPTIASRWLQRLLV 721 + +N S L + Sbjct: 702 GQSERDNEEIPPSVILAEFME 722 >gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9] Length = 770 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 79/690 (11%), Positives = 195/690 (28%), Gaps = 120/690 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + +T +I + + + N Sbjct: 54 NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ + I AKN D++D I E Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ +V R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANDVIKNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394 K+ + A++ER+EA+ +A + + E N K A++ Sbjct: 305 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I +D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEP- 413 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + L++ ++ + + + + Sbjct: 414 ----------------------KRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGK 451 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + ++ + + ++ + Sbjct: 452 A--------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE +++ F + G+ + + L +++ + ++ Sbjct: 504 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + L + Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719 +++ TR+L SR+L+ + Sbjct: 610 EEILFLTNANTRTLFGKTGYNRPSRFLREI 639 >gi|308049019|ref|YP_003912585.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Ferrimonas balearica DSM 9799] gi|307631209|gb|ADN75511.1| DNA helicase/exodeoxyribonuclease V, gamma subunit [Ferrimonas balearica DSM 9799] Length = 1159 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 113/946 (11%), Positives = 248/946 (26%), Gaps = 100/946 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L +VE + PL P L + V + Q L+ +G ++ + Sbjct: 26 LRDLVVEWIKSHPLAP--LENEVFLVQSNGMAQWLKLALAADSGIGIAAALQMQLPSRFI 83 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + + +L + P S + L RL+ + L P Sbjct: 84 WQLYR--QVLGADAVPKDSPFDKPLLRWRLLRLLPGLLDRPAFAPLQRFLEDDP-DLRKR 140 Query: 146 IWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTERLVEL 202 LA+ LAD+ D + W A ++ + + W L ++ Sbjct: 141 DQLAEQLADLFDQYQVYRADWLAAWARGEDELINATGFRNPLPSEQLWQPELWRAILADM 200 Query: 203 NASSPVGYQIALMRAEAEHLMKGT-----KGPIIIAGSTGSIPATARLMSTVANHPNGAI 257 N + + L + + L +G I++ G + ++ +A H + Sbjct: 201 NDAERDTSRAMLHQQVVDRLRQGPPPVGLPRRIVVFGISTLPSQMIEALAALAQHCQILL 260 Query: 258 VLPGLDCHIPTAI----------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKR 307 + H I + + ++ + L + R Sbjct: 261 CVQNPCQHFWGDIIEQKDLLRAQLSRARHQRKPGLAAELDPAAQHAEVNPLLAAWGKQGR 320 Query: 308 EDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE------------NKIPNIQKC 355 + + L + S SD + + Sbjct: 321 DYIGMLYGYDQPEAYQGQFNSIDLFEDPLSDSDGRLLHRIQAGIFELEPTPAPPMRVDPD 380 Query: 356 FSDVALIEADNEREEAISIAIALRMSLDENKK----KSALITADRNLARRVKLEL----- 406 V A + + E + L E+ ++ D + + Sbjct: 381 DDSVRFTLAHSRQREVEILQDHLLKRFAEDPSLTPTDVIVMMPDVSQYAPHIEAVFGQVE 440 Query: 407 --TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP--LAKFGFPEK 462 + I+ + L LL+ + L+ P A+FG E Sbjct: 441 RDDPRHLPFTIADRPQRGQQVLVLALERLLSLSQARFTVSELLDLLAVPALRARFGIDES 500 Query: 463 YLSRAKNALELVALRGNKNSYDIMDLK-------SLVLDRIATQKNNTHVPHWQSRLSEE 515 L + +E +R ++ L + + V + E Sbjct: 501 QLPLLQRWVEDAGVRWGLDAAQRATLDLPDNLDQNTWAFGLKRMLLGYAVGQGDAWAGIE 560 Query: 516 DKELAVLLVDHILQCITPLVT-YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E L ++ + L+ + + + + W + + + + Sbjct: 561 PFEEIGGLDAALVGGLARLLDKLEGFWTQLGQSHTPAAWAQHLRRLCAELFRPQDEEETV 620 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + + L+ + GS ++ E V + + + Sbjct: 621 I-LARLDEALAQWLEACEQGGSTDPLPITVVREVCLSPFGEEGVSQRFLAG-KINFGTLM 678 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPF-----------LSRVMQSDLNLKTAEKYIGQ 683 R + F + L GLN+ +P++ F + + + + Sbjct: 679 PMRAIPFKQVCLLGLNDEDYPRSRPAMDFDLLAAAGWPDGRGQPIANQYRPGDRSRREDD 738 Query: 684 AAHDFEMANGTRH-LIYTRSLR--ENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLD 740 E R + ++ R +N S L +L+ + + +L Sbjct: 739 RYLFLEALMAARDQIYFSYVGRNARDNAERTPSVLLGQLMDHLRAGYCLEDGEDLVEHLT 798 Query: 741 WTRKLDY---------------------TTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLI 779 L Q H + P P+ + +++ L+ Sbjct: 799 TVHPLQPFSRAYFSGTEGSLHTFAREWFDAHQGHVETESPALPVWQPQAPITLTDLASLL 858 Query: 780 NDPYAVYARRILKLDFIPHFKKDPDRTDRGTL------FHNIITELIKKRINKNTPEINH 833 DP + R L + F + D + + ++++ + P+ Sbjct: 859 RDPVRLLMTRRLGIWFGDDTEAAEDLEPFALDGLTSFQIRDELMTVLRQHPEQTGPQRAQ 918 Query: 834 LMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIE 879 L+ Q I + LP H + E Q + + Sbjct: 919 LLAQRIGRLGGRGQLPFGAFA-ELATDHLAEPTLAAFERAQQLAGQ 963 >gi|116052319|ref|YP_792630.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa UCBPP-PA14] gi|115587540|gb|ABJ13555.1| exodeoxyribonuclease V gamma chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 1171 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 101/922 (10%), Positives = 241/922 (26%), Gaps = 73/922 (7%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L V R PL PL V ++ + Q L+ E + I + +V Sbjct: 25 LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 82 Query: 86 ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +L P VS + + RL+ + L L+ Sbjct: 83 LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 141 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198 LA+ LAD+ D + W D + ++ + ++ W Sbjct: 142 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 201 Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252 L ++ A S + + R E L + +++ G + T ++ +A Sbjct: 202 LADVGADSLARSRSGVHRRFIEALRFASAAPRALPRRVVVFGISSMPAQTLEALAALARF 261 Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H I ++ ++ Q++ L + Sbjct: 262 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 321 Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346 R+ + L + + R+ + + E Sbjct: 322 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 381 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402 + P + + + A + + E + L + + + ++ D N Sbjct: 382 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 441 Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + I ++ L LL I L+ P Sbjct: 442 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 501 Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506 + F E L+ +E +R ++ L + + V Sbjct: 502 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 561 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + L + + L+ + + + L V Sbjct: 562 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 621 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + H + L + + L + +D + + + Sbjct: 622 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 681 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + + R + F + L G+N+G +P+ + F ++ + Sbjct: 682 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 739 Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + + L + R +N S + +L + + G+ L + Sbjct: 740 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 799 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 QP +R P + ++++ + ++ + A + Sbjct: 800 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHREDEIGAPDAEAPLPPLELEGALG 857 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863 N + ++R+ + + + FE + L + Sbjct: 858 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 915 Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885 + + + + + V Sbjct: 916 VER--DWDAEGLPAQLQAQVER 935 >gi|104779935|ref|YP_606433.1| exonuclease V subunit gamma [Pseudomonas entomophila L48] gi|95108922|emb|CAK13618.1| exonuclease V, gamma subunit [Pseudomonas entomophila L48] Length = 1160 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 98/962 (10%), Positives = 243/962 (25%), Gaps = 106/962 (11%) Query: 50 YVPTKRAIQELRSEFI------EITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPV 103 V + Q L+ + G ++ G + + + +L + P V Sbjct: 44 LVQSNGIAQWLKLALAEDSLDDDQGGCGIAAAIDVQLPGSFMWQLYRR--VLGRDEIPEV 101 Query: 104 SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEE 163 S + + RL+ + + + L+ LA+ LAD+ D + Sbjct: 102 SLLDKAPLTWRLMRLLPEVIERPHFEPLRRF-LTDDSDLRKRYQLAERLADLFDQYQVYR 160 Query: 164 KKWEDLHALKNEKY-----GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE 218 W L + + A + ++ W L ++ + + + Sbjct: 161 ADW--LKDWASGAHVLNTARGERKPLAAGNRWQAELWRILLEDVGEEGMAQSRAGVHQRF 218 Query: 219 AEHLMKGTKGP------IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI-- 270 E + + P +I+ G + ++ +A + + H I Sbjct: 219 IERINSLEQTPAGLPARLIVFGISSLPAQILEALAGLARFSQVLLCVHNPCRHHWGDIVA 278 Query: 271 ------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNE----- 319 ++ Q++ L + R+ + L + + Sbjct: 279 DKDLLRHQYKRQQRKQGMPMQLDDELLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQT 338 Query: 320 --MYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFS--------DVALIEADNERE 369 GR + S+ + +++ + + ++ + V A + + Sbjct: 339 VFSDGRIDLFSEGDPQTLLNQLQDDILELRPLAETREQWPAVDPTKDRSVRFHVAHSPQR 398 Query: 370 EAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL-------TRFGINIDISAG 418 E + L + ++ + + I ++ Sbjct: 399 EVEILHDQLLARFSADPTLRPRDIIVMLPAIDTYAPHIRAVFGQLERHDPRYIPFTLTDQ 458 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFP--EKYLSRAKNALELVAL 476 L LL + L+ P + F E L +E + Sbjct: 459 GQRGRDPLLIALEHLLKLPDSRFAVSEVLDLLDVPAVRARFAIQESDLPTLHRWIEGSGI 518 Query: 477 RGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL-VDHIL 528 R ++ L ++ + V + E + L I Sbjct: 519 RWGLSAEQRASLGLPEGLEQNSWRFGLRRMLLGYAVGVGEGCDGIEPYDEIGGLDAALIG 578 Query: 529 QCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLF 588 + L + + + W + LQ L E L + + L + Sbjct: 579 PLVALLDALDIACQALSQPATATQWGERLHALLQIFFLAEDEHDELLLVQ--LQDLRDTW 636 Query: 589 SKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGG 648 + + + + + + + ++ + R + F + L G Sbjct: 637 LETCDAVGLQDLLPLTVVREAWLSGLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLG 696 Query: 649 LNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE--N 706 +N+G +P+ F ++ + + + L + R + Sbjct: 697 MNDGDYPRAQPPLDFDLMASDYRPGDRSRREDDRYL-LLEALLSARDQLYVSWVGRSIRD 755 Query: 707 NIPTIASRWLQRLL------VLGGTDFFDNLKKRGQCYLDWTRKLDYTTK---------- 750 N AS + +L + GQ L + Sbjct: 756 NSERPASVLVGQLRDHLAAGWQLAGARLGQREDPGQQLLHALTQEHPLQPFSLRYFQKGS 815 Query: 751 ---------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL-- 793 P P + + +++ + P + + LK+ Sbjct: 816 PLFSFAHEWRVLHQQDAQNGEQPPALPAYSSEEPLNLVQLQDFLRHPVRHFFSQRLKVFF 875 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLP-PHI 852 + + D + L ++E + + ++ LP Sbjct: 876 EALEAPTPDEEPFVLDALQRYGLSESLLGAALADPDNAERALQAQARRLQACGMLPLAGF 935 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + + L+ ++ + V + E L G+ R+ Sbjct: 936 GEALQAELIQPLPDLLQRHRQLLQRW-PMSVEGALPIHFEQGAHRLEGWLGRVYQADDQS 994 Query: 913 VD 914 + Sbjct: 995 LL 996 >gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 663 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 65/681 (9%), Positives = 170/681 (24%), Gaps = 120/681 (17%) Query: 50 YVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL-SYNLNPPVSNIQR 108 T +A +E++ I G + + + + + + + Sbjct: 55 ITFTNKAAKEMQERVAHIMGGRVPGGLTVCTFHALGVRIVRQEAKHCGLKPQFSILDASD 114 Query: 109 LLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAK-NLADIIDIIE-TEEKKW 166 +++ + +K S + I+P A LA +A + + E+ Sbjct: 115 TVQIVSDVAGDSDKGIAKQMQWQISSWKNAMITPEEAAQLADNEIASVAARLYKEYERTL 174 Query: 167 EDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 A+ + + D + W +L Sbjct: 175 RAYQAVDFDDLIALPVRLFDEHPEVRERWQNKL--------------------------- 207 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNT 286 +++ + A RL+ ++ D W ++ + Sbjct: 208 -RYLLVDEYQDTNRAQYRLLKLLSGVRGA--FTAVGDDDQAIYAWRGADVENLKLL---- 260 Query: 287 TYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILE 346 +P+ + KL R ++ +T N + + Sbjct: 261 -QQDYPKLKVIKLEQNYRSSRRILEA---------------------ANTVIANNEKLFD 298 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMS---LDENKKKSALITADRNLARRVK 403 ++ + + + + EA +A + K A++ + AR ++ Sbjct: 299 KRLWSEHGQGEQIVVTNCRDAEHEAEWVATKITAHKFEHRTRFKDYAILYRGNHQARLIE 358 Query: 404 LELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKY 463 +L I +S G L + L + +D +A + P G Sbjct: 359 QQLRNHRIPYVMSGGQSFFDKAEIRDLIAWLRLLVNEDDDLAFIRAITTPRRGIGAATIE 418 Query: 464 LSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLL 523 A + + + + + + Sbjct: 419 ALGAYAGHRHSS--------------------LFAAVFEEGLTQHLNAKQLQGVQEFAAY 458 Query: 524 VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKT 583 ++ + P G + W + + + W +G+ Sbjct: 459 INRLQYR-APREPAAQLLEDLLGAIRYEAWLFEHCDTREAESKWSNVRDFVGWLGRKGEE 517 Query: 584 LSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDT 643 + +++ + + + + + S+ L F Sbjct: 518 -----------------DGKNLLELTQTIALMSMLDKEDPDFDGVQMATLHASKGLEFPH 560 Query: 644 LILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI-YTRS 702 + L G+ EG+ P ++ + +K + + + + T Sbjct: 561 VFLVGVEEGLLPHQSSID---------------EDKVEEERRLMYVGITRAQRSLNLTWC 605 Query: 703 LRENNIP----TIASRWLQRL 719 R + SR++ + Sbjct: 606 ERRKSGKEFRTCEPSRFIAEM 626 >gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] Length = 1198 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 88/854 (10%), Positives = 199/854 (23%), Gaps = 118/854 (13%) Query: 169 LHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-------- 220 L + I + + A + Sbjct: 349 LEQINARAAYERSAALLRISNIVFSDYARQKRRRAAMDFDDLIESAAGLLTTRSMAQWVL 408 Query: 221 HLMKGTKGPIIIAGSTGSIPATARLMSTV---------ANHPNGAIVLPGLDCHIPTAIW 271 ++G I++ + + P +L++ + H N + D + Sbjct: 409 WKLEGGLSHILLDEAQDTSPEQWKLLNALTAEFFSGEGVEHENPRTMFVVGDEKQSIYSF 468 Query: 272 NTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLG----------------- 314 + + K D L R + L Sbjct: 469 QGADPEKFLSKRQEFIEDSARAKQENKTPDILMSFRSAPEVLAFVDEVFDTGAFDGEAAF 528 Query: 315 ---NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEA 371 + R + + + + ++ +E + + E A Sbjct: 529 SLKPPEDGNIMRHLPFRRGHIGSVELWPLLRPKVNDESTPWDAPLG--QDLETNPKAELA 586 Query: 372 ISIAIALRMSLD--------------ENKKKSALIT-ADRNLARRVKLELTRFGINIDIS 416 IA ++ +D L+ L + L I + + Sbjct: 587 DRIAKWVKNIIDTKQAIFDEGKMRPARPGDVLILVRGRKGGLFDSIIKALKTNNIPVAGA 646 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 I L +L L +L+ D + +A ++ P + A N + Sbjct: 647 DRIELLDSLPVQDLLNLIRFALCPEDDLTLAEILTGPFGGLNENDNLYPLAHNRGDESLW 706 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 S L + ++ + + + + E + I + P Sbjct: 707 SRVLKSEMPSVLPVREFLQGCLERRHIQPYEFLTAVLETQGHDGMDGWQKIQSRLGPPAK 766 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 ++ L + G + S + Sbjct: 767 -----------EPMTALMDRAAGFDAKGPSSLQLFLATIEK--SGGEVKRELSGPQDEVR 813 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPK 656 + + + ++ ++ K + L I E + +W Sbjct: 814 VMTVHGSKGLEAPIVIVPDTCAATKSGVDNNLLITPEKERDDHTSPPEGMP-----IWSG 868 Query: 657 NTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENN-----IPTI 711 + ++ L+ ++ L A + + + + Sbjct: 869 SAKQDTTLAAKLRL---LADARATREHRRLLYVALTRAKDRLLICGPWSGGVKSKTGHSE 925 Query: 712 ASRW------LQRLLVLGGTDFFDNL-----KKRGQCYLDWTRKLDYTTKQPHYKRPKPF 760 S + +QRL G D+ + YT + + Sbjct: 926 TSWFAICHKAMQRLADKGLAQIIDDPNVEPIEGEDNPIAYQFGASQYTDNHAIIENDELD 985 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 + +T P ++ L +++ R RG L H ++ L Sbjct: 986 YIPDWIGKTVPHESGGSRYAAPSSLLGEEPAVLPPFVKSQEE--RLKRGRLIHTLLQTLP 1043 Query: 821 KKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKISHSFLEHEEKIQSSIE 879 + H + + P I R +F + L+ + Sbjct: 1044 DIPKADWEKQAMHFLGR-----------DPSIKAEDRIEMFERAID-VLDDPKFDPIFGT 1091 Query: 880 KIFVNIPAKMAIESI------GIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKL- 932 +P + G+ + G DR+ + V I D+KT Sbjct: 1092 NSKAEVPI---VGGNDKKLPKGMLINGRVDRLVVT-DESVLIVDFKTDRPAPAREEDMGP 1147 Query: 933 -IDPQLSLEAAALK 945 Q++ A L+ Sbjct: 1148 TYTAQMAAYRAVLE 1161 >gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] Length = 762 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 82/691 (11%), Positives = 194/691 (28%), Gaps = 124/691 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADLLLSYNLNPP- 102 ++ T +A +E+R E ++ + I + + + N Sbjct: 54 NILAITFTNKAAREMRER-AEKLKTEAQDCL---IATFHSMCVRILRRE-ADHIGYNRNF 108 Query: 103 --VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIE 160 V ++ + R++ L P+ + I AKN D+ID + Sbjct: 109 TIVDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLIDEVA 155 Query: 161 TEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 + + + + L + A + +R + Sbjct: 156 YANLAGDMYTEIV---------------AKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQ 200 Query: 221 HLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTIT 275 + + I + + A +L+ +A+ V+ D W Sbjct: 201 NPDVLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGAD 258 Query: 276 EKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPD 335 ++ +P+ + L + + ++ V R Sbjct: 259 MQNILDFEK-----DYPEAKVVLLEENYRSTKTILQAANEVIRNNRNR------------ 301 Query: 336 TSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALIT 393 + + ++ A++E++EA+ +A + E K A++ Sbjct: 302 ---------PPKNLWTQNEDGEEIVYYRANDEQDEALFVARTIDQLSREGYSHKDFAVLY 352 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R V+ L + I + G + + S LN I +D ++ +V P Sbjct: 353 RTNAQSRTVEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEP 412 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 G I D S + N + + + + Sbjct: 413 KRGV--------------------GPGTMEKIRDFASSQEMSLLDASANILLSPVKGKAA 452 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 + + A +L+D + + + + + T V Sbjct: 453 QAVYDFANMLLD-----------LREHLDDYTVTELVEAVLEKTGYAAALVAQATLESQA 501 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 + EE +++ F + + S ++ + + L ++SS + ++ Sbjct: 502 RIENIEEFLSVTKNFDESPDNSSD-ESGLDKLSRFLNDLALIADTDDGDQESSEVTLMTL 560 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 ++ L F + L G+ E V+P + A + L + Sbjct: 561 HAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRLA--------------YVGITR 606 Query: 694 TRHLIYTRSLRENN-----IPTIASRWLQRL 719 ++Y + SR+L+ + Sbjct: 607 AEKILYLTNANSRMLYGKTNYNQPSRFLREI 637 >gi|50983083|gb|AAL79571.2| exonuclease V gamma subunit RecC [Pseudomonas syringae] Length = 1149 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 95/964 (9%), Positives = 245/964 (25%), Gaps = 101/964 (10%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ ++ G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDARDDDLGGCGIAAAVDVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + ++L P S + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYR--VVLGSEQIPATSLLDKAPLTWRLMRLLPALIDQPHFEPLQRF-LTHD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKN---EKYGMWWLLAADFLKIASKYWT 196 L++ LAD+ D + W + A + ++ W Sbjct: 137 SDLRKRYQLSERLADLFDQYQVYRADWLEDWAAGRHQLRNARGESPALSPANCWQAELWR 196 Query: 197 ERLVELNASSPVGYQIALMRAE------AEHLMKGTKGPIIIAGSTGSIPATARLMSTVA 250 L+++ + + + E G +I+ G + ++ ++ Sbjct: 197 ALLLDVGEEGMSQSRAGVHQRFMDKINSLEQAPPGLPARVIVFGISSLPAQALEALAGLS 256 Query: 251 NHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDF 302 + + H + I + + Q++ L + Sbjct: 257 RFSQVLLCVHNPCRHHWSDIVADKDLLRHQYKRQARKAGMPAALDLDILHQHAHPLLAAW 316 Query: 303 LDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD---------------MRNTDILEN 347 R+ + L + + R+ ++ E Sbjct: 317 GKQGRDYINLLDSYDDPNSYRAAFRDGRIDLFSEVQPLNQLNQLQDDILELRPLSETREL 376 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRVK 403 + A + + E + L + + ++ D + Sbjct: 377 WPAVDLDQDQSIRFQVAHSAQREVEILHDQLLARFAKYPQLQPRDVIVMVPDIDSYAPHI 436 Query: 404 LEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 + R I ++ + LL I L+ P + Sbjct: 437 RAVFGQIERDDRRLIPYTLADQGQRGRDPLLIAIEHLLKLPDSRFPVSEILDLLDVPALR 496 Query: 457 FGFP--EKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPH 507 F E+ L +E +R N+ L ++ + V Sbjct: 497 ARFNVQERDLPTLHRWIEGAGIRWGLNAEQRAGLGLPAHLEQNSWRFGLRRMLLGYAVGS 556 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 ++ E + L ++ + L+ + ++ + L + Sbjct: 557 AEACDGIEPYDEIGGLDAVLIGPLVALLDALEIAHQELSRPALPGQWGERLQALVQLFFQ 616 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + + + + + G + + +D + + + Sbjct: 617 AETEHDDYLLAQLEELRETWLETCELVGLQDELPLTVVREAWLAGLDQGKLSQRFLAGA- 675 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + + R + F + L G+N+G +P+ F ++ + Sbjct: 676 VNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRPGDRSRREDDRYL-LL 734 Query: 688 FEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV--------LGGTDFFDNLKKRGQC 737 + + L + R +N A + +L GG D + + Sbjct: 735 EALLSARDQLYISWVGRSIRDNSERPACVLIGQLRDHLASGWQLAGGGDLLQAMTQEHPL 794 Query: 738 YL--------------DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPY 783 + R+ + Q + ++++ + +P Sbjct: 795 QPFSTRYFHEGNSNLFSYAREWQRLHEPQPAPVAPGILTAHEQEEPLNLTQLQDFLRNPV 854 Query: 784 AVYARRILK-------LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMK 836 + + LK + D R TL +++ + + ++ Sbjct: 855 RHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYTLSDSLLEAALAQPDQPEQALHTRALR 914 Query: 837 QIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + + + ++ +N ++ ES G+ Sbjct: 915 LQGSGLLPMAGFGESLQQELIEPLPDVLQRY-----QQLLALWPTPLNSALPVSFESNGL 969 Query: 897 HLTG 900 L G Sbjct: 970 TLEG 973 >gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] Length = 759 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 89/697 (12%), Positives = 205/697 (29%), Gaps = 126/697 (18%) Query: 46 SVTIYVPTKRAIQELRS-EFIEITGKKSTILPIIKSLGDVVEEKFTADLL-----LSYNL 99 ++ T +A +E+R + T+ I + + + ++ + Sbjct: 54 NILAITFTNKAAREMRERAIALNPATQDTL---IATFHSMCVRILRREADYIGYNRNFTI 110 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDII 159 V ++ + R+I ++ S I AKN D++D I Sbjct: 111 ---VDPGEQRTLMKRIIKQLN-----------LDTKKWNERSILGTISNAKN--DLLDEI 154 Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEA 219 E++ + + + K + E L A + +R Sbjct: 155 AYEKQAGDMYTQV---------------IAKCYKAYQEELRRSEAMDFDDLIMMTLRLFD 199 Query: 220 EHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 ++ + I + + A +L+ +A+ V+ D W Sbjct: 200 QNKDVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGA 257 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ +PQ + L + ++ ++ NV N R Sbjct: 258 DMQNILDFEK-----DYPQAKVVLLEENYRSTKKILQAANNVINHNKNRRPK-------- 304 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSAL 391 K+ + A+NE+EEA+ +A + + E K A+ Sbjct: 305 -------------KLWTQNDEGEQIVYHRANNEQEEAVFVASTIDNIVREQGKNFKDFAV 351 Query: 392 ITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 + +R ++ L + I + G + + + LN + +D ++ +V Sbjct: 352 LYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVIAYLNILANTSDNISFERIVN 411 Query: 452 HPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSR 511 P G R+ A ++N + + + Sbjct: 412 EPKRGVGPGTLEKIRS----------------------------FAYEQNMSLLDSSSNV 443 Query: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571 + K A V + I L + + T ++ D T L Sbjct: 444 MISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQNTL---ES 500 Query: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631 + EE +++ F E + + L +++ + ++ Sbjct: 501 QARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAEVTLM 560 Query: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691 ++ L F + L G+ EGV+P + A ++ A++ + + Sbjct: 561 TLHAAKGLEFPVVFLIGMEEGVFPLSRA--------------IEDADELEEERRLAYVGI 606 Query: 692 NGTRHLIY-----TRSLRENNIPTIASRWLQRLLVLG 723 +++ TR+L +R+++ + Sbjct: 607 TRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDEL 643 >gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1] Length = 815 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 68/725 (9%), Positives = 177/725 (24%), Gaps = 71/725 (9%) Query: 4 KKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELRS 62 ++ V A T+ + +L V T++A Q+L + Sbjct: 20 EQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVLPEQVLGLTFTRKAAQQLGT 79 Query: 63 EFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 + + + L D+ LL+ + + L + Sbjct: 80 RVRSRLRRLAGS----RLLDDLDPTGARRAALLAGEPTVSTYHAYAGRLVGEHALRLPAE 135 Query: 123 LPDIIKDLYPESPLSLPISPANAIWL---------AKNLADIIDIIETEEKKWEDLHALK 173 + + L+ + A L L + + + D+ L Sbjct: 136 PANRLLGPTATWQLAHRVVSTWAADLEIDRVPATVTGYLLSLAGELGEHLVEPADVERLT 195 Query: 174 NEKYG--MWW--------------------LLAADFLKIASKYWTERLVELNASSPVGYQ 211 L + + R A Sbjct: 196 ARMLPVLEHAPPGKRQRAEPSAGYKARIAGQRMRLELLPLIEEFARRKQAEQAMDFSDQM 255 Query: 212 IALMRAEAE-----HLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI--------- 257 R + +G +++ + A L+ + P G Sbjct: 256 ALAARIAEADPEVGRIERGQYRAVLLDEYQDTGHAQRVLLRALFGVPPGLAPEPEEPEHR 315 Query: 258 -VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 V D W + + ++ + + LL E + Sbjct: 316 SVTAVGDPCQSIYGWRGASAGNLARFRTDFPTPSGGPAPVHGLLTSFRNPAEVL------ 369 Query: 317 SNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAI 376 + +S+ + + + + + A+ + Sbjct: 370 -----ALANRVSEPLRTAPGAVRVGELRPLDGAGPGDVRAALLPDVAAEIAWAADGIASR 424 Query: 377 ALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNA 436 + + +A++ R+ + L + +++ L +T L S L Sbjct: 425 WHAGADEGEPPTAAVLVRRRSDMDALAAALRDRRVPVEVVGLGGLLSTPEVRDLVSALRV 484 Query: 437 IFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRI 496 + + L+ P + G + + + + + + L L + Sbjct: 485 VTDPLAGPSAVRLLTGPRWRLGIADLAALWQRARELVPSRPAR---PGPLGPEELALGAL 541 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + E + D I + L + + +L ++D + Sbjct: 542 PGDEAEQAGLADALDDPGEPDRYSQAGFDRIRRIGRELSHLRARAAAPLTDL-VADVERT 600 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 + ++ + +L + + ++++D + +G Sbjct: 601 LLLDVETMARPGPTGRAHLDAFADVVADFA-----AGADVPSLPALLDYLDTAEQAEEGL 655 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 T + IL ++ L ++ + + L V+P +L + L+ Sbjct: 656 TPGEVEVSPDRVQILTVHAAKGLEWEIVAVPHLVAQVFPGRKMSGSWLKDPSDLPVPLRG 715 Query: 677 AEKYI 681 + Sbjct: 716 DADDL 720 >gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] Length = 745 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 68/693 (9%), Positives = 177/693 (25%), Gaps = 125/693 (18%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 V T +A +E+R I G + L + + + Sbjct: 67 QVLAVTFTNKAAREMRERVSAILGHPAEGL-WLGTFHALCARM----------------- 108 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 ++R EL L + D L + + + + L II + Sbjct: 109 LRRHAELVGLTSNFSILDTDDQMRLLKQVMEASGVDMKRWPP--QALMGIIQRWKDRGLT 166 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + A ++ + + + ERL +LNA+ + ++ H Sbjct: 167 PARITAAEDSDFANNRARSL------YAAYQERLKQLNATDFGDLMLHVVEVLRGHPDVL 220 Query: 226 TK-----GPIIIAGSTGSIPATARLMSTVANHPNGAI--VLPGLDCHIPTAIWNTITEKS 278 + I++ + + +A PN + D W ++ Sbjct: 221 AQYHRNFRYILVDEYQDTNTVQYLWLRLLAQRPNQTERNICCVGDDDQSIYSWRGAEVEN 280 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 + +T + L+ + ++ + ++ Sbjct: 281 ILRFEKDFPGAT---------IVRLESNYRSTAPILAAASGLIAKN-------------- 317 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITADR 396 + V ++ + EEA + + + + + + A++ Sbjct: 318 -SGRLGKTLRPGRKDASGEKVRVVSLWDSEEEARMVGSRIEAARRDGQSLAEIAILVRAG 376 Query: 397 NLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK 456 R + L GI + G + L + + D +A +V P Sbjct: 377 FQTRAFEERLITLGIPYRVVGGQKFYERAEIRDAMAYLRVVNQPADDLAFERIVNTP--- 433 Query: 457 FGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + L ++ + + Sbjct: 434 --------------------KRGLGDTALRQLHEAAREQGVPLVAAAGGMVASGGMRPKP 473 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 ++ L++ + L + + +W Sbjct: 474 RQALHELLEGFARWREMLSREGHVVVAATLL--------------------DESGYTEMW 513 Query: 577 FEEEGKTLSSLFSKIIETGSCIK--ANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 +++ + E + + +++ + +++ + + + + ++ Sbjct: 514 KQDKSPEAPGRLDNLKELLRAMAEFESLAGFLEHVALVMEND----EQSEDGKVSLMTLH 569 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L FD + L G EG++ Q L+ + + + Sbjct: 570 AAKGLEFDMVFLPGWEEGLF------------PHQRALDEGGEKGLEEERRLAYVGITRA 617 Query: 695 RH-LIYTRSLRENN----IPTIASRWLQRLLVL 722 R + + I SR+L L Sbjct: 618 RKYCTISHAANRRIYANWTSAIPSRFLDELPPE 650 >gi|329296292|ref|ZP_08253628.1| exonuclease V subunit gamma [Plautia stali symbiont] Length = 1126 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 87/764 (11%), Positives = 196/764 (25%), Gaps = 80/764 (10%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 LL VE + PL LA+ + V + Q L+ E + I Sbjct: 11 DLLKDLAVELIKLQPLA-DPLAAEQVLVQSPGMAQWLQMELANRFNIAANI--DFPLPAS 67 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 + F L + + RL L + S L Sbjct: 68 FIWSMFVKVLPDIPEESAFTKASMSWKLMHRL-----PVLLEQEAFQPLRSYLHDDDDQR 122 Query: 144 NAIWLAKNLADIIDIIETEEKKW----EDLHALKNEKYGMWWLLAA-DFLKIASKYWTER 198 L+ +AD+ D W E + W A L ++ + Sbjct: 123 KLYQLSARVADLFDQYLVYRSDWLNRWERGEQVDRLSDAQQWQAALWRDLVEFTRSLGQP 182 Query: 199 LVELNASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNGA 256 + ++A + + I G + P + + + H + Sbjct: 183 MWHR-----ANLYARFIQALEQASTPPPGLPQRVFICGISALPPVYLQALEALGRHIDIH 237 Query: 257 IVLPGLDCHIPTAI--WNTITEKSTNITSSNTTYSTHPQYS----LAKLLDFLDIKREDV 310 ++ H I + + + + + T P + L + L ++ Sbjct: 238 LLFTNPCRHYWGDIQDYAFLAKLQSRQRLRLHSQETQPLFRDPDAAPALFNELGEQQLTN 297 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP-------------------- 350 L + ++S+ + D +N + Sbjct: 298 PLLASWGKLGRDNLFLLSQMESAANDIDAFVEMSPDNLLHCLQADLLNLDDRAVIGLSAG 357 Query: 351 ---------NIQKCFSDVALIEADNEREEAISIAIALRMSLDENK----KKSALITADRN 397 + + L + + E + L ++ + + ++ AD + Sbjct: 358 ELADSMDKRRLDPHDRSITLQVCHSAQREVEVLQDHLLALMEADPELKPRDIIVMVADID 417 Query: 398 LARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + IS L SLL + L++ Sbjct: 418 SYAPFIQAAFASAPPERYLPFAISDRRASQAHPAILALLSLLVLPDSRFASEEVLALLEV 477 Query: 453 PLAKFGF--PEKYLSRAKNALELVALRGNKNSYDIMDLK--------SLVLDRIATQKNN 502 P F E L + + +R + + L + Sbjct: 478 PALAQRFSVEESGLRLLRRWVMESGIRWGLDDASVEALALPVTGQHTWRFGLQRMLLGYA 537 Query: 503 THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQ 562 + + E + L+ + L + + ++++W L + Sbjct: 538 LESRNGDWQGILPYDESSGLIAELAGNLAELLARLDSWRTRLAQTRTLAEWLPLCRELID 597 Query: 563 NVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKI 622 + + L E + + ++ D + +D + + + Sbjct: 598 SFFSGDVDSEAALLLVE--TQWQEIIEQGMQAAYQQPIPVTLLRDELRSRLDQQRISQRF 655 Query: 623 EKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIG 682 + + R + F + L G+N+GV+P+ A F Q+ ++ Sbjct: 656 LAGP-INFCTLMPMRSIPFKVVCLLGMNDGVYPRTLAPLGFDLMQQQTRKGDRSRRDDDR 714 Query: 683 QAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLLVLGG 724 + + + L + R ++N S + L+ Sbjct: 715 YL-FLEALISAQQQLYISYIGRAIQDNTERYPSVLVTELVDYLA 757 >gi|323491620|ref|ZP_08096799.1| exonuclease V subunit gamma [Vibrio brasiliensis LMG 20546] gi|323314196|gb|EGA67281.1| exonuclease V subunit gamma [Vibrio brasiliensis LMG 20546] Length = 1152 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 111/949 (11%), Positives = 245/949 (25%), Gaps = 127/949 (13%) Query: 24 ALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGD 83 +L LVE R +PL I V + Q L+ E + G ++I L Sbjct: 11 DVLKSLLVELVRLNPLA-NPFEQEQILVQSPGMSQWLKMELAKEFGVAASIE---FPLPA 66 Query: 84 VVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPA 143 ++L + +L ++ L D + + L + Sbjct: 67 TFIWNMFTEVLPDVPKRSAFNKESMTWKLMHILPG----LLDQPQFEPLKHYLEQDEDSS 122 Query: 144 NAIWLAKNLADIIDIIETEE----KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 L++ +ADI D WE + + W I + + Sbjct: 123 KLYQLSEKIADIFDGYLVYRPEWIASWEAGQTVLELEDEHPWQ------PILWQALYDHT 176 Query: 200 VELNA--SSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMSTVANHPNG 255 V L + + + G T P + + H + Sbjct: 177 VALGQSPYHRANLYEHFIDTLESSQANFDHLPKRLFVFGITSLPPRYMDALKAIGEHIDV 236 Query: 256 AIVLPGLDCHIPTAIW-------------------------NTITEKSTNITSSNTTYST 290 ++ + + + +E+ N Sbjct: 237 HLMFTNPCRYYWGEVRDRKFLARLAAKHRKHVVWNQDHSEQHGESEQLKGSLEDNVIDEL 296 Query: 291 HPQYSLAKLLDFLDIKREDVKRLGNVSNEMY-------GRSMVISKSFLPPDTSDMRNTD 343 H LL + D L + R ++ + + D Sbjct: 297 HTDAVGNSLLASMGKLGRDNMYLLSQLESNEIEAFVDVERDSLLHQLQADILNLEEHQDD 356 Query: 344 ILENKIPNIQ---KCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADR 396 + + Q + L + E + L D + + ++ +D Sbjct: 357 HQLDSSSHKQVVLADDKSLTLHACHSPMREVEVLHDQLLSMFDADPSLKPRDIIVMVSDI 416 Query: 397 NLARRVKLEL-----TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVK 451 N + I IS + + L+N + L++ Sbjct: 417 NAYSPAIQAVFGNAPGERFIPYSISDRTADQESPILNAFMQLVNLPNTRCLASELLELLE 476 Query: 452 HP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLK----SLVLDRIATQKNNTHV 505 P LA+F E AK +E +R NS + + + ++ Sbjct: 477 TPAVLARFELTEDEFILAKQWVEESGIRWGLNSSTSQEFELPATEQNTWQFGIERMLLGY 536 Query: 506 PHWQSRLSEEDKELAVLLVDHI----LQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCL 561 S E A+ + + + L + + L + L Sbjct: 537 AMPHSAGLFESNSGALAPYNEVQGMGAELAGKLAHFIETISDYRQKLQLIQSIDSWREVL 596 Query: 562 QNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPK 621 + D L E K++ + + E + II + + + + Sbjct: 597 TVLLDDF--FSVELEGEAALKSIRDTLANLKEQLTDAAFEQNLAPAIIAQYLHNKLAGTR 654 Query: 622 IEKS---STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAE 678 + + + + R + F + L G+N+G++P++ F ++ ++ Sbjct: 655 VSQRFLAGQVNFCTLMPMRSIPFRAVCLLGMNDGIYPRSVPPEGFDLMNGRAKPGDRSRR 714 Query: 679 KYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLV-------LGGTDFFD 729 M + + L + R +N + S + L+ L G + Sbjct: 715 DDDRYL-FLEAMLSAQQTLYISYVGRSIQDNTERVPSVLVSELMEYCQQNYCLQGDESLP 773 Query: 730 NLKKRGQCYLDWT---------------RKLDYTTKQPHYK------------RPKPFPP 762 + + ++ Y + + + + Sbjct: 774 SDDSGNKLLRQLVNSHSMVPFSANAFIGKQPSYAKEWLPAANRQGQSGGEFNRQLQDYLL 833 Query: 763 LEAQPRTYSFSEIKQLINDPYAVYARRILKL---DFIPHFKKDPDRTDRGTLFHNIITEL 819 P E+++ P + R LK+ +P + D G + + L Sbjct: 834 DATYPLELDLVELQRFWRLPVQYFFNRRLKVMFEPPLPVMEDDEPFVLDGLESYQMRDGL 893 Query: 820 IKKRINKNT---PEINHLMKQIIDSHFEKENLPPHID---IIWRHLFHK 862 + + + ++K ++ + LP + Sbjct: 894 LDSLLKHRLSGSQDTKAIIKTFVEQQRAQGKLPVGAFGDIEFETNRVQA 942 >gi|315604923|ref|ZP_07879981.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313462|gb|EFU61521.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 585 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 63/595 (10%), Positives = 148/595 (24%), Gaps = 95/595 (15%) Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK-----NSTCGNLSIS 551 A + +E + + + + Sbjct: 20 ADLVADPRTWRPTIEEAERAGGKRARAASALARPLEVASRLWDLGMNGSNRPQERLWELW 79 Query: 552 DWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITR 611 + + + + L + + A A ++ + Sbjct: 80 EAAGVADEWRSRAIASDESSGWYDDQLDAVVALLRVADVWQQRNPATSA-AQFAAELASG 138 Query: 612 LIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSD 671 + +T+ + + + +L ++ +++ ++L GL +G WP ++ L + +D Sbjct: 139 TVPIDTISRVGVRPAGVEVLTPAQAMGRHWEVVVLAGLQDGAWPNLRLRDRILRADLLAD 198 Query: 672 LNL-------------------KTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 A + R ++ + Sbjct: 199 AGAGRTSVGEDGREELIDSVRAARAAVLDDEYRLFVAAVTRARRVV--HAGAVRAEDAAP 256 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWT------------------------------ 742 S + + L GT +L + Sbjct: 257 SVFFDLVARLAGTPRVGDLVPVDPVDAPLSLSGHIADLRARAAAPDDPADADLAATLLAL 316 Query: 743 -----RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 + S S+ ++ + P + + Sbjct: 317 LAREGIASAQPHRWLGAGGTPTSARDYRGDIVLSPSQFERALVCPLRWFLTTV------G 370 Query: 798 HFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR 857 GTL H + E + T + + ++ NL + Sbjct: 371 AEGTANAAASLGTLVHAVAEENPHGTAEELTEALEARINELG------YNLDTWAGRVAD 424 Query: 858 HLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITD 917 H I + + + + V + +E G+ + G DR++ + G V +TD Sbjct: 425 RRAHAIVDNLASY---VVGVPGDVDVEETVEATVE--GVTIRGRMDRLEHVDEG-VRVTD 478 Query: 918 YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITND 977 KTG + + + +PQL+ AL A + Sbjct: 479 LKTGKGGYTKASVR-DNPQLAAYQMALIASGR--------------SVAGARIALLGGAK 523 Query: 978 KKKYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQSEYDHLARVAE 1032 + L + L+ ++ V + G + R S+++ +D L E Sbjct: 524 PQILDQPPLRGQELEKWLDCVREVALGARGPYFQARPSQEACRYCSFDRLCPARE 578 >gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] Length = 718 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 66/686 (9%), Positives = 158/686 (23%), Gaps = 123/686 (17%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105 T +A E+R ++ G I + + A L + + + Sbjct: 60 VTFTNKAAAEMRHRIEDLIGTSQGGMW---IGTFHSLAHRLLRAHYLDAGLPQDFQIIDS 116 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + + R++ + E + Sbjct: 117 DDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK---------------------KDEGLR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + N W + + E + Sbjct: 156 PQHIQTYGNPVETTWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPQIL 207 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + + +A +++ D W ++ Sbjct: 208 EHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQTGKVMIV--GDDDQSIYGWRGAQVENIQ 265 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + G + + S + Sbjct: 266 NFLNEFP--------------------------GAETIRLEQNYRSTSNILKAANALIAN 299 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 N+D L + ++L A N+ +EA + ++ +E A++ Sbjct: 300 NSDRLGKNLWTEGAEGEPISLYCAFNDLDEARYVVGRIKRWHEEGGALADCAILYRSNAQ 359 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L + + I G S + +D + +V P G Sbjct: 360 SRIMEEALLQANMPYRIYGGQRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIG 419 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R ++N + E K Sbjct: 420 DRTLDVVRQV------------------------------ARDNQITLWESALQVIEHKM 449 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 LA + I + + + T ++ + + + + Sbjct: 450 LAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKGEKAQARIENL 509 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 EE T + FS E + A ++ + ++ ++ Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQA-----FLSHAALESGEGQADAYQDAVQLMTLHSAKG 564 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L F + + G+ E F S++ + E+ + M + L Sbjct: 565 LEFSQVFIVGVEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----KKLT 611 Query: 699 YTRSLREN----NIPTIASRWLQRLL 720 T + + SR++ L Sbjct: 612 LTYAENRRLYGKEVSHRPSRFIGELP 637 >gi|322515453|ref|ZP_08068441.1| exodeoxyribonuclease V gamma subunit [Actinobacillus ureae ATCC 25976] gi|322118499|gb|EFX90744.1| exodeoxyribonuclease V gamma subunit [Actinobacillus ureae ATCC 25976] Length = 1105 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 80/768 (10%), Positives = 184/768 (23%), Gaps = 76/768 (9%) Query: 18 FREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPI 77 + L+ N +P N I V + Q L+ + + G Sbjct: 10 LSSLAEMLI-HLQKANPNSNPFNTEA-----ILVQSVGMAQWLQMQIADSIGVA------ 57 Query: 78 IKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-------ELARLILIWRNKLPDIIKDL 130 G+ T+ L Y + P + + L RLI + L Sbjct: 58 ----GNYDFLFPTSFLWQQYRVLFPSLPKENIFKRSSVTWRLMRLIPAHLD--TAEFSTL 111 Query: 131 YPESPLSLPISPANAIWLAKNLADIIDIIETEEKKW----------EDLHALKNEKY--G 178 L+ +AD+ D W L + + Sbjct: 112 KSYLQQDARQYQLKLYQLSTKIADLFDQYLVYRPHWLVHWENNQLEAVLAEIMHSNVFKV 171 Query: 179 MWWLLAADFLKIASKYWTERLVELNA------------SSPVGYQIALMRAEAEHLMKGT 226 L+ + W + ++ + + + Sbjct: 172 KNEQEILANLQWQAILWNALIDDIKLDSDESVFITSHRAYLQDQYFQKLDNLTAQEKEKL 231 Query: 227 KGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN--TITEKSTNITSS 284 I I G + ++ ++ H + + + + + S Sbjct: 232 PQRIFIFGISSLPATQLAVLKKLSEHCDIHLFFLNPSQEYWGDSVEDSALEKLALKQQLS 291 Query: 285 NTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS-FLPPDTSDMRNTD 343 T + + +LL + + Y + Sbjct: 292 ETDLAALLEKQGNQLLTMWGKQGREFLAQLVEQEFDYSLEVFDPYVGETNLIKLKNAILA 351 Query: 344 ILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLA 399 + + + + + E + L ++N K +++AD + Sbjct: 352 FNNAQTFELDEQDQSLQFHSCHSIMREVEVLHNYLLQLFEQNPALTPKDIIVMSADIDKY 411 Query: 400 RRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 + I +S + S SLLN + + L+ Sbjct: 412 APYINAVFSRFDHKDPRRIPFTLSDQKATAVDPIISSFLSLLNLKESNFNAEVLLDLLDV 471 Query: 453 ----PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHW 508 + + Y R + + S + Sbjct: 472 NAIRSRFRIQSDDIYTLRHWIKEVGIRAGLTIEQSQWQNYNSWQNGLTRLLLGTSLKEEN 531 Query: 509 QSRLSEEDKELAVLLVDHILQCITP-LVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLD 567 + L ++ + L + + S+ W + + + LD Sbjct: 532 GIWQDSIGFNESYGLTSELVGYLCHYLEKLSEWQQFIQASHSLDLWQQKLTELISDFYLD 591 Query: 568 EHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSST 627 + +L + TL S+ KI + + ++ + + Sbjct: 592 DTETFDSLSMLQ--TTLQSVLEKIENARFEDEISVEILALLLQENL-NTQQNSLQFLAGK 648 Query: 628 LFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 + L R + F + L G+NE +P+ + N F + Sbjct: 649 VSFCTLLPMRAIPFKVVCLLGMNEADFPRQHSVNSFDLMQYAPKKGDRARRDDDRY--LF 706 Query: 688 FEMANGTRHL-IYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLK 732 E + + + + +N + S + +LL ++ + Sbjct: 707 LEALLSAQEIFYVSYVGQSVTDNKVRLPSVLVAQLLDYISEHLSESAQ 754 >gi|254559023|ref|YP_003066118.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4] gi|254266301|emb|CAX22062.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens DM4] Length = 1139 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 101/920 (10%), Positives = 204/920 (22%), Gaps = 140/920 (15%) Query: 28 GTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEE 87 TL+ + S+ + + +A EL ++ ++ I + + Sbjct: 222 RTLIRRVTSLIDEGIDPNSILVLTFSNKAAGELMDRLA-LSHPEAAASVWIGTFHAFGLD 280 Query: 88 KFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW 147 L P + + + L + D +DL+ Sbjct: 281 IVR-RFHDRLGLPPGPRLVDKATAITMLEEVVPTLDLDHYRDLWDPEENL---------- 329 Query: 148 LAKNLADIIDIIETEEKKWEDLHALKN-------EKYGMWWLLAADFLKIASKYWTERLV 200 + I + E L ++ M A + + L Sbjct: 330 --SEILAAISRAKDELVGPVRYAELAEDMKLKASDETSMLRARRAGEEALVYAAYERLLA 387 Query: 201 ELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 + +A + +R AEH I++ AT R+++ +A G Sbjct: 388 DNDAVDFGDLILKPVRLMAEHPEVAKALALRHRHILVDEYQDVNFATVRMIAALA-ADRG 446 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 + D + T S +P+ + L + E + Sbjct: 447 ERLWVVGDARQSIYRFRGATSASMTAFK-----EDYPKAADGALTVNYRSRGEIIDTFTA 501 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + + G + S P + R I E P+ + ++ EA+ Sbjct: 502 FATSVAGFKPLGDLSLKPDRGTSGRRPAIYEAGTPDDEVALVAASVAEAE---------- 551 Query: 376 IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLN 435 + + A++ + L G+ + PL L LL Sbjct: 552 -----AAGVAYRNQAILCTANDRLAEFAEGLAARGVPVLYLG--PLFERPEIKDLLCLLA 604 Query: 436 AIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDR 495 +R M L + + Sbjct: 605 LFHDPRAA------------------------------TLVRVAILPEIGMGLDDVAVVA 634 Query: 496 IATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTK 555 + + T W D L + L +I+ Sbjct: 635 ASLRHAATEPLAWLD-----DAVSLEALSAGGRAALGRLRNACAGFERRAHPWTIASALV 689 Query: 556 LTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLI-- 613 + + L G + + + S + E I RLI Sbjct: 690 ----LDRLGIARRIGEATTLGDRMAGVAVWQFLNFLRSLPSEGEFPTYEASRQIRRLIRL 745 Query: 614 ----DGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGL-------NEGVWPKNTAKNP 662 + + ++ S+ L F+ + GL Sbjct: 746 KEDRSLRQFPDAALELDAVRLMTLHGSKGLEFELVHAPGLITTGLPRKAKPPDCPPPDGL 805 Query: 663 FLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLR--ENNIPTIASRWLQRLL 720 + + T +A F + + R + + S +L+ + Sbjct: 806 IAGSEGMTGIEACTVGHDEQEACLFFVLLSRARDDLRLYRSTLLKGGKKRSPSDYLKHIA 865 Query: 721 VLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLIN 780 G LD + P P I Sbjct: 866 GTLGPAPV----------------LDRLPELAGEPASAPVSVAWDVPVELDHRHIDSYER 909 Query: 781 DPYAVYARRILKL-DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQII 839 +L L G + + + + Sbjct: 910 CGLRFLYTYVLGLGGRRDENPYMRMHNAVGEMVDWLDRNFDAGKAEP------EGFAEAF 963 Query: 840 DSHFEKENLPPHIDIIWRHLFHKISHSFL---EHEEKIQSSIEKIFVNIPAKMAIESIGI 896 + + H + FL E Q P + + G Sbjct: 964 EDAWGTHGPADHGHAEAYRRIAEEMLRFLVGMRDEAGRQP---------PLALRWPAGGG 1014 Query: 897 HLTGFA-DRIDLLKSGFVDI 915 H+ A D + G + + Sbjct: 1015 HVLTRAHD-VVRTPDGRLVV 1033 >gi|159903622|ref|YP_001550966.1| exodeoxyribonuclease V subunit C 125 kD polypeptide [Prochlorococcus marinus str. MIT 9211] gi|159888798|gb|ABX09012.1| possible exodeoxyribonuclease V subunit C 125 kD polypeptide [Prochlorococcus marinus str. MIT 9211] Length = 1105 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 86/756 (11%), Positives = 203/756 (26%), Gaps = 77/756 (10%) Query: 23 PALLNGTLVENFRYDPLNPLLLAS-VTIYVPTKRAIQELRSEFIEITGKKSTI---LPII 78 L L E R NP L+ V I V T + L E +I G + + P Sbjct: 10 AEWLANVLAEQLR---ANPPGLSENVEIVVNTWPTGRWLGEEIAKINGISALVRFPFPAA 66 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLL-ELARLILIWRNKLPDIIKDLYPESPLS 137 + +V + +++ + I +L L L+ + +++ Sbjct: 67 QLKT-LVRKFLGIEVINDDDPWEANQLIWPILNSLPELLQK---EEAGVLQKWLERDLSQ 122 Query: 138 LPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWW-------------LLA 184 + LAK +A D WW Sbjct: 123 SGKLSRDEWQLAKTIAYTFDEYIMYRPDV----------ISDWWGTENEINNLKSKLPKY 172 Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 + I +R+ + V + ++ + I G P Sbjct: 173 IQWQPILINLLKQRITQEPFGLQVRNVASKLKKGIAPKQNLPSD-LRIFGINSLAPVQLE 231 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L+ ++ + L + + E +N + L L + Sbjct: 232 LIQALSCIMEVKVFLLTPCKDLWSRCKTKREEYGEGWKVANDKLWLLNKQRLEATLGRMG 291 Query: 305 IKRE---------DVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKC 355 + E + ++ ++K P ++ + I +Q+ Sbjct: 292 SEFEQLLEGSGEYQLGEWDEKDLFAMPATIALNKQRKPTLLEQIQQRLVTNECIEPLQRS 351 Query: 356 FSD--VALIEADNEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRF 409 D ++ E + + + + L + K ++T + + Sbjct: 352 LDDSSISFTECPGPKRQIQIVRDQILQQLALNKNLEPKDILIMTPQVEKFAHLIPSIFND 411 Query: 410 GI------NIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAK--FGFPE 461 I+ + + L+ + L+ +P+ K + + Sbjct: 412 VSATGVTLPWKITDRSQYDQPGLTQCIILLMEIACTRLTASNLDQLLTNPVIKDLYKLDD 471 Query: 462 KYLSRAKNALELVALRGN-----KNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEED 516 + + N L+ R ++ + L + + T ++ Sbjct: 472 SEIDKITNCLQETGFRWGINSLERDGEETHTLNWCLERWLVGMVIPTIPGLVLGGIAPFS 531 Query: 517 KELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 K ++ + + + L + S W + ++C ++ + + Sbjct: 532 KGIS---ISELSKWWEILSKICNMLQGLRQSHSCMKWGLVLKGLCDDLCNNDRKW--SWE 586 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLES 636 + + + + +I+ LI E + ++ + I Sbjct: 587 RQRFLRAIDDWI--RAADCFKKEIKIEVVAEIVKDLIAKEAGRFGH-RTGRITISALEPM 643 Query: 637 RLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH 696 R + ++L GL+E ++P+ + F + L E TR Sbjct: 644 RAIPHKMIVLMGLDETIFPRKQQRPGFSLLDHKHFLGDPRINDKDRYV--LLEALISTRE 701 Query: 697 -LIYTRSLRENNIP--TIASRWLQRLLVLGGTDFFD 729 L+ T R+ S +Q+ + + Sbjct: 702 TLLITWDGRDEKTGDSLEPSSPVQQFFEYLQHELGE 737 >gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 694 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 76/689 (11%), Positives = 194/689 (28%), Gaps = 113/689 (16%) Query: 53 TKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLEL 112 T R ++ + + + + E+ + P + Sbjct: 16 THRIAHLIQQRLA------APWEILALTFTNKAAEELRGRIEELVGTAPGIWASTFHAAS 69 Query: 113 ARLILIWRNKLP--DIIKDLYPESPLSLPISPANAIWLAKNLA-------DIIDIIETEE 163 AR++ ++L L++ + + L + I + E Sbjct: 70 ARILREHADRLGYTSSFVIYDSADQLTVIKNVMKNLNLDDDTRFKPRGVLSAISRAKNEM 129 Query: 164 KKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM 223 + + Y + + + ERL NA + +++ EH Sbjct: 130 MDVDTYDEAADNFYS-------RTVAKVFRSYQERLRLNNALDFDDMLLLVVKLLREHPE 182 Query: 224 -----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKS 278 + I++ + ++ + V+ D + ++ Sbjct: 183 VLKAYQEKFRYILVDEYQDTNRVQYEIVRLLGGVHRNLCVV--GDDDQSIYQFRGADIRN 240 Query: 279 TNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSD 338 P+ + KL + ++ +V GR Sbjct: 241 ILDFE-----RDWPEAEVVKLEENYRSSGNILEAAWHVVKHNAGRK-------------- 281 Query: 339 MRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKKKSALITADRNL 398 + K+ Q+ + + A +E++EA IA +R L + A++ Sbjct: 282 -------DKKLWTSQEAGDPIQVYTAQDEQQEARYIAGEIRK-LSATYDQFAVLYRTNAQ 333 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L R I+ + G+ + + L + D +++ ++ P Sbjct: 334 SRAIEDALIRENISYQMVGGVRFWERKEVKDILAYLRVLDNPADGISLLRVINVPR---- 389 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + + L +A Y+ + L A K + Sbjct: 390 --RGIGATSVEKLNNMASERGITFYEALRLADEAGLGSAPLKK---------------VK 432 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 L++++ Q L + + + + + + + R+ L F Sbjct: 433 SFAALLENLQQMREYLSVDELTEQVMIKSGYLDEL------RAEGTDQAQSREENLLEFL 486 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 + T + + + +D + + + ++ ++ Sbjct: 487 TVAQDFVKESEDKSLTAFLTQLSLVSDLDTLED-----------DGGPRVVLMTMHAAKG 535 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT-RHL 697 L F + + G+ EG++P + + TA+ + + + L Sbjct: 536 LEFPVVFVAGMEEGIFPHMRSFD--------------TADGIEEERRLCYVGITRAEKRL 581 Query: 698 IYTRSLREN----NIPTIASRWLQRLLVL 722 T ++ N + + SR+L+ L Sbjct: 582 YLTSAMNRNLFGRRMHNMPSRFLRELPDA 610 >gi|291440630|ref|ZP_06580020.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291343525|gb|EFE70481.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 282 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 32/265 (12%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 + S S + P R I +L + RGTL H+++ L + T Sbjct: 5 SLSPSRASDFMQCPLLYRFRVIDRLPEK-----PSEAATRGTLVHSVLERLFDAPAAERT 59 Query: 829 PEINHLMKQIIDSHFEK----------ENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSI 878 + + ++ W ++ + E S + Sbjct: 60 APRAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLE--DPSRL 117 Query: 879 EKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLS 938 E + + ++S G+ L G DR+D+ +G V I DYKTG P+ + Q+ Sbjct: 118 EPAERELFVEAELDS-GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP-EYAEGALFQMK 175 Query: 939 LEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIV 998 A + + L + L + E+ + L+ + Sbjct: 176 FYALVVWR-----LKKVVPRRLQLVYLGSGDVLTYDPVPAD-------LERVERKLLALW 223 Query: 999 TLLQNGEQPFISHLRLSEKSNIQSE 1023 ++ R S+ + Sbjct: 224 DAIRTATGTGDWRPRPSK-LCGWCD 247 >gi|33865448|ref|NP_897007.1| exodeoxyribonuclease V, gamma subunit RecC [Synechococcus sp. WH 8102] gi|33632617|emb|CAE07429.1| probable exodeoxyribonuclease V, gamma subunit RecC [Synechococcus sp. WH 8102] Length = 1073 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 98/872 (11%), Positives = 226/872 (25%), Gaps = 67/872 (7%) Query: 19 REMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPII 78 E + LL L+E P +V + V T + L + G S + Sbjct: 10 AEFLATLLARQLLEER------PDPFETVEVLVNTWPTSRWLGEQLATANGISSLV--RF 61 Query: 79 KSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSL 138 G + + L L P + + + + L+ + Sbjct: 62 PFPGSRLRQLVRRVLDLPDQEQDPWRATSLVWAVLEQMPALLEQPVARPLQLWLQQRDGG 121 Query: 139 PIS--PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWT 196 S + LA+ +AD D E LH+ + D+ ++ Sbjct: 122 DASGLSRDRWQLARAIADAFDDYALYR--PETLHSWIQSQGSRAASAETDWQPWLARQLA 179 Query: 197 ERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGA 256 L V + +R+ A I + G + P L+ ++ + Sbjct: 180 ASLHRQPFGLQVQSAVERLRSGAVDPQVLP-KVIRLFGISALAPVQVELIQALSGSTDVQ 238 Query: 257 IVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNV 316 + L + N + T L +L + + + + Sbjct: 239 VYLLTPCRDLWQRCGNRREQLGATWTEPPDGGWLQQAPRLEAMLGRMGAEFQQLLEGSGD 298 Query: 317 SNEMYGRSMVISKSFLPPDTSDMR-----------NTDILENKIPNIQKCFSDVALIEAD 365 S R + + + R + + + + A Sbjct: 299 SQLGEVREGDLFADPVRIAEGEGRSATLLEQLQQQLVEPGCRESLDRDLDDRSLLFQAAP 358 Query: 366 NEREEAISIAIALRMSL----DENKKKSALITADRNLARRVKLELTRFGINIDISAGIPL 421 E + + L + + ++T + + + I + L Sbjct: 359 GPWREVQLVRDQVLQWLAADPELEPRDVLVMTPQIDRYAPLLSSVLNDRDAIGVDLPWRL 418 Query: 422 STTL------HSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAKNALEL 473 + + ++ LL+ + L+ +P + S L+ Sbjct: 419 TDRSQQSTPGLTMVMLELLDLASGRLTATGLERLLANPALQTQQGLSGTEASALTRCLQR 478 Query: 474 VALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVD--HILQCI 531 R ++ + ++ L + + L+ +D +++ Sbjct: 479 TGFRWGLDARERGGDETHSLSWCLDRWLLGLALPQRDGLAPGGAAPFHQDLDPQRLVRWW 538 Query: 532 TPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKI 591 + L + + W +L L+++ D W + + + + Sbjct: 539 SVLDRLVRWLQQLRRPRTSTAWVELLQAVLEDLFADGGAWS---WERQGWSAALAEWQQR 595 Query: 592 IETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNE 651 + S A+ + L +S L + R + ++L GL++ Sbjct: 596 AASCSLELEVAVAAEVLAEALSVDS--GRFGHRSGALTVSALEPMRAIPHKVIVLMGLDD 653 Query: 652 GVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTI 711 GV+P+ + F + L + + RHL+ + R + Sbjct: 654 GVFPRVDQRPGFHLLEQRRWLGDPRGGDQDRYV-LLEALMSARRHLLISWCGRNEHT--- 709 Query: 712 ASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS 771 + Q D TR+L P P P + + Sbjct: 710 -------------GEPRPAAAPVEQWLQDLTRQLGTEASAGLCIEPDPNPLDRSNFQ--- 753 Query: 772 FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEI 831 + Q ++ A R ++ + H + ++ E+ Sbjct: 754 VAGHGQPLSCDRRQLAAR----RWLDQHQSHAATAGLAWPLHWSAPDPEVTIDPRSDEEL 809 Query: 832 NHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI 863 + + + L P + + Sbjct: 810 LQWLVDPQSAWLRQLGLHPAERVDPVEDLEAL 841 Score = 38.7 bits (88), Expect = 5.1, Method: Composition-based stats. Identities = 48/567 (8%), Positives = 141/567 (24%), Gaps = 45/567 (7%) Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAG 418 + L ++ A +A L + + ++ +R + +L + Sbjct: 2 LTLYRSNRAEFLATLLARQLLEERPDPFETVEVLVNTWPTSRWLGEQLATANGISSLV-R 60 Query: 419 IPLSTTLHSSILTSLLNAIFKLNDFMAIA-----------TLVKHP------LAKFGFPE 461 P + ++ +L+ + D L++ P L Sbjct: 61 FPFPGSRLRQLVRRVLDLPDQEQDPWRATSLVWAVLEQMPALLEQPVARPLQLWLQQRDG 120 Query: 462 KYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 S +A D + L + + ++LA Sbjct: 121 GDASGLSRDRWQLARAIADAFDDYALYRPETLHSWIQSQGSRAASAETDWQPWLARQLAA 180 Query: 522 LLVDH-----ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLW 576 L + + L + + + + + L ++ + ++ Sbjct: 181 SLHRQPFGLQVQSAVERLRSGAVDPQVLPKVIRLFGISALAPVQVELIQALSGSTDVQVY 240 Query: 577 FEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTL-------F 629 + L E + + + + L Sbjct: 241 LLTPCRDLWQRCGNRREQLGATWTEPPDGGWLQQAPRLEAMLGRMGAEFQQLLEGSGDSQ 300 Query: 630 ILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD-- 687 + E L I G + + + L+ ++ + A Sbjct: 301 LGEVREGDLFADPVRIAEGEGRSATLLEQLQQQLVEPGCRESLDRDLDDRSLLFQAAPGP 360 Query: 688 FEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKL-D 746 + R + + + + + L R +D +L D Sbjct: 361 WREVQLVRDQVLQWLAADPELEPRDVLVMTPQIDRYAPLLSSVLNDRDAIGVDLPWRLTD 420 Query: 747 YTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF--------IPH 798 + + L+ + + +++L+ +P + + + Sbjct: 421 RSQQSTPGLTMVMLELLDLASGRLTATGLERLLANPALQTQQGLSGTEASALTRCLQRTG 480 Query: 799 FKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRH 858 F+ D +RG + ++ + + + + + F ++L P + W Sbjct: 481 FRWGLDARERGGDETHSLSWCLDRWLLGLALPQRDGLAPGGAAPF-HQDLDPQRLVRWWS 539 Query: 859 LFHKISHSFLEHEEKIQSSIEKIFVNI 885 + ++ ++ + +V + Sbjct: 540 VLDRLVRWL---QQLRRPRTSTAWVEL 563 >gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 824 Score = 93.4 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 82/717 (11%), Positives = 194/717 (27%), Gaps = 86/717 (11%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 A+L + + P + T +A E+R ++ G ++ + + + Sbjct: 60 TAVLTRRIAYLLAERGVMP---GQILAITFTNKAAAEMRERVAQLVGPRANSM-WVSTFH 115 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 A L + LN S + D + +S + Sbjct: 116 SSCVRILRAQAGLLHGLNSNFS------------------IYDADDSRRLLTMISKDLEI 157 Query: 143 ANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + A+ LA I ++ E E+ A + + ++ +RL Sbjct: 158 DTKRYSARLLATKISNLKNELIDPEEAAADADRDSND----LDKLVARVYAHYQQRLRAA 213 Query: 203 NASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHP---- 253 NA + + + +++ + A L+ + Sbjct: 214 NALDFDDLIGETVGLLQANPQVAEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGEESDDP 273 Query: 254 ---NGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDV 310 + D + T ++ +P L + + Sbjct: 274 YAVPPGELCVVGDADQSIYAFRGATIRNIEEFE-----RDYPDARTILLEQNYRSTQNIL 328 Query: 311 KRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREE 370 +V + GR E ++ + ADNE +E Sbjct: 329 SAANSVISRNTGRR---------------------EKRLWTDSGEGELITGYVADNEHDE 367 Query: 371 AISIA---IALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 A +A L + + + A+ N +R ++ R GI + G Sbjct: 368 AQFVASEIDRLVDAGETKFGEVAVFYRTNNSSRALEEIFIRLGIPYKVVGGTRFYERKEV 427 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 + + L + +D +++ ++ P G + + V + Sbjct: 428 RDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAEALRAAGEGS 487 Query: 488 ---LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 L + I + ++ D + + + + + + S+ Sbjct: 488 VPLLNTRSQKAITSFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTGYRRELEASS 547 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 + V + + ++ + + G + Sbjct: 548 D-----PQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPGSLAA 602 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 +++ ++ + D + V E + ++ ++ L F + + G +G +P A Sbjct: 603 FLERVSLVADSDQV--PDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPA 660 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLV 721 + L A I +A H + RS + SR+LQ + Sbjct: 661 ELSEERRL----AYVGITRARHRLYLTRA-----IVRSAWGQPVTNPESRFLQEIPA 708 >gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 680 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 81/710 (11%), Positives = 182/710 (25%), Gaps = 117/710 (16%) Query: 36 YDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLL 95 ++P + T +A +E+ + G+ P I + ++ Sbjct: 45 AAGVDPE---RILSVTFTNKAAREMLDRTSLLLGRTMKKRPTISTFHSWCVGILRQEIDS 101 Query: 96 SYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADI 155 + + ++ L + A+ LA Sbjct: 102 LGYP--------KQFVIYD----------RGDQESAARKALQVLKMTDTALKPGDLLAQ- 142 Query: 156 IDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM 215 I + + + + + + +A + + L Sbjct: 143 ISRWKMQGVMPDLAQEIADSDH-------EQLAGMAYRRYQLALKAAGGVDFDDLLFLTF 195 Query: 216 RA-----EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAI 270 + EA + + I + RL+ ++ V+ D Sbjct: 196 QLFKHHPEALERQQNRFDFVQIDEYQDTNELQFRLIESIVRRHQNLCVV--GDDDQSIYG 253 Query: 271 WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKS 330 W K + P + +L D ++ + GR + Sbjct: 254 WRGAEVKHILGFKQSF-----PAAKVVRLEDNYRCTESIIQLANQLVAHNRGRHEKRLIA 308 Query: 331 FLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR---MSLDENKK 387 + V E +E+ EA + + L+ Sbjct: 309 HR----------------------GGTSVVFREYPDEQAEAEGVVRDIAYLIHQLNVRPC 346 Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 + A++ R + EL R I+ I G L + L + D +++ Sbjct: 347 EIAILFRTNEQPRIFEHELRRKQIHYRIVGGQSFFDRKEIKDLQAYLKVLVNPRDDLSLL 406 Query: 448 TLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 ++ P G A R +K Sbjct: 407 RIINVPPRGIGDATCERLLA---------------------------RAVKEKRRFWDVI 439 Query: 508 WQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK--NSTCGNLSISDWTKLTVTCLQNVC 565 + + E A+ + + ++ L + L + + T + Sbjct: 440 PDAAAAGEITSKALNNLRQFEKQMSGLREAFKQPGVKLSETFLRMVETTGYAREIERTYK 499 Query: 566 LDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKS 625 E +++ NL E +S ++ + ++D I+ L + P+ Sbjct: 500 SAEQQEMRNLILGEFANAVSQYEAQSRS------PSLEGYLDEIS-LGGSDFAAPERPDE 552 Query: 626 STLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAA 685 + + ++ ++ L F+ + L GL EG+ P + + + + Sbjct: 553 NAITLMTLHSAKGLEFERVYLVGLEEGILPHKRSVDEEF----------ENPSSVEEERR 602 Query: 686 HDFEMANGTRH-LIYTRSLRE----NNIPTIASRWLQRLLVLGGTDFFDN 730 + + L TRS T SR+L+ + T Sbjct: 603 LCYVGITRAKDFLTITRSQSRVKWGKKRETKPSRFLKEMRTAIETTAAPE 652 >gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320] gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320] Length = 718 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 66/686 (9%), Positives = 157/686 (22%), Gaps = 123/686 (17%) Query: 50 YVPTKRAIQELRSEFIEITGK--KSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--VSN 105 T +A E+R ++ G I + + A L + + + Sbjct: 60 VTFTNKAAAEMRHRIEDLIGTSQGGMW---IGTFHSLAHRLLRAHYLDAGLPQDFQIIDS 116 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + + R++ + E + Sbjct: 117 DDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK---------------------KDEGLR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-- 223 + + N W + + E + Sbjct: 156 PQHIQTYGNPVETTWLK--------VYQAYQEACDRAGLVDFAELLLRAHELWLNKPQIL 207 Query: 224 ---KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTN 280 + I++ + + +A +++ D W ++ Sbjct: 208 EHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQTGKVMIV--GDDDQSIYGWRGAQVENIQ 265 Query: 281 ITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMR 340 + G + + S + Sbjct: 266 NFLNEFP--------------------------GAETIRLEQNYRSTSNILKAANALIAN 299 Query: 341 NTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITADRNL 398 N+D L + ++L A N+ +EA + ++ +E A++ Sbjct: 300 NSDRLGKNLWTEGAEGEPISLYCAFNDLDEARYVVGRIKRWHEEGGALADCAILYRSNAQ 359 Query: 399 ARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG 458 +R ++ L + I G S + +D + +V P G Sbjct: 360 SRIMEEALLQANKPYRIYGGQRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIG 419 Query: 459 FPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKE 518 + R ++N + E K Sbjct: 420 DRTLDVVRQV------------------------------ARDNQITLWESALQVIEHKM 449 Query: 519 LAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFE 578 LA + I + + + T ++ + + + + Sbjct: 450 LAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKGEKAQARIENL 509 Query: 579 EEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRL 638 EE T + FS E + A ++ + ++ ++ Sbjct: 510 EELVTATRQFSYQDEDEDLMPLQA-----FLSHAALESGEGQADAYQDAVQLMTLHSAKG 564 Query: 639 LNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLI 698 L F + + G+ E F S++ + E+ + M + L Sbjct: 565 LEFSQVFIVGVEE---------GMFPSQMSLDEGGRLEEERRLAYVGVTRAM----KKLT 611 Query: 699 YTRSLREN----NIPTIASRWLQRLL 720 T + + SR++ L Sbjct: 612 LTYAENRRLYGKEVSHRPSRFIGELP 637 >gi|116510846|ref|YP_808062.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis subsp. cremoris SK11] gi|122940438|sp|Q033I2|ADDB_LACLS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; AltName: Full=ATP-dependent helicase/nuclease RexB gi|116106500|gb|ABJ71640.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis subsp. cremoris SK11] Length = 1099 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 76/239 (31%), Gaps = 24/239 (10%) Query: 738 YLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIP 797 LD + +D P + S S ++ N Y + L L+ Sbjct: 728 LLDLAKDIDTVN-----LAPDTLEQIYGDKIYASVSSFERFYNCEYQYFLENTLSLETFE 782 Query: 798 HFKKDPDRTDRGTLFHNIITELIKK--RINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + + G FH + +++K+ +N E L Q +D ++ + Sbjct: 783 NID--INSKIVGNFFHEVFEKVMKETDLSAENFDEKLTLFLQEVDKNYSRYFTQDATARF 840 Query: 856 WRHLFHKISHSFLEHEEKIQS--SIEKIFVNIPAKMA------IESIGIHLTGFADRIDL 907 +I + S ++ + ++ I+L G DR+D Sbjct: 841 TWSNLEEIVRQTATVLKATVSTDELKTLLTESSFGLSKSELGNFSVDDIYLRGRIDRLDQ 900 Query: 908 LKSGFVDITDYKTGDNPKKE--TAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIR 964 L + ++ + DYK+ + A + Q +K +K+ Y++ Sbjct: 901 LSTDYLGVIDYKS-SAHSFKLQEAYDGLSLQFMTYLDVIKQ----AFPNQKIWGALYLQ 954 >gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029] gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138] gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029] gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138] Length = 639 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 85/691 (12%), Positives = 173/691 (25%), Gaps = 127/691 (18%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTI-LPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + T +A +EL+ + + +P++ + + Sbjct: 52 EILAVTFTNKAARELKERIVNQCASTNEFDVPMVCTFHSLG------------------- 92 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIW--LAKNLADIIDIIETE 162 + L R I + + I D L + + LA + + + Sbjct: 93 ----VFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQHNLKPNLASKIQAHVSQAKNR 148 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE---- 218 EDL Y + + + ++L+E NA +R Sbjct: 149 LLFPEDL---DPNDYIDPVVS-------IYQEYQKKLIEANALDFDDLLFLTVRLLRESP 198 Query: 219 -AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 A+ L ++I + A LM ++ V D W Sbjct: 199 EAQELYNQLWKALLIDEYQDTNHAQYTLMQLLSKQHRN--VFAVGDPDQSIYSWRGANIH 256 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + ++ Y AK+L + + Sbjct: 257 NILNFEND--------YPNAKVL------------------CLEENYRSYGNILNAANAL 290 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK---KKSALITA 394 N LE ++ +++ + L +REEA +A + + + Sbjct: 291 IKNNASRLEKELRSVKGPGEKIRLFLGSTDREEADFVAAEILQLHRVGNIKLRDICIFYR 350 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 + +R + L R I +I G+ + + L +D +A V P Sbjct: 351 TNSQSRTFEDALLRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKSDIVAFDRTVNLPK 410 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G + + + A Q+ S+ + Sbjct: 411 RGIGSTTIFAL------------------TQYAIAQGLPILKACQQALDTKDVKLSKKQQ 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E + + L I L ++ + + T E Sbjct: 453 EGLQEYLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKA 512 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 L E++ + L + + + ++ Sbjct: 513 LESEQQ-------------------NPKTHLELFLDDLALKGSDDDLNLTADRVNLMTLH 553 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 + L F L GL E + P + T E + + Sbjct: 554 NGKGLEFRVSFLVGLEEQLLPHANSLGG-------------TYENIEEERRLCYVGITRA 600 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRLL 720 + L+Y RSL SR+L+ + Sbjct: 601 QDLLYLTAAQVRSLWGTVRMMKPSRFLKEIP 631 >gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 817 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 81/692 (11%), Positives = 176/692 (25%), Gaps = 126/692 (18%) Query: 45 ASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVS 104 + + + T +A +E++ + G + +P + + + V Sbjct: 88 SQILVVTFTNKAAREMKDRIHAMVGDQIEGMPWLGTFHSIG-----------------VR 130 Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEK 164 ++R EL L + D L + L + W A+ LA ID + Sbjct: 131 ILRRHHELVGLKSGFTILDTDDQIRLLKQ--LLAAENIDEKRWPARLLASTIDSWKNRGL 188 Query: 165 KWEDL---HALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 +D+ + RL LNA + +R E+ Sbjct: 189 SPKDVPPGEGAVFANGRG---------GTLYAAYQARLKALNAVDFGDLLLEGIRLFREN 239 Query: 222 LMKG-----TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 +++ + A + +A + D W Sbjct: 240 PDVLAEYHKRFKYLLVDEYQDTNVAQYLWLRLLAQGSKNVCCV--GDDDQSIYGWRGAEV 297 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + S+ G + Sbjct: 298 DNILRFESDFP--------------------------GAKVIRLERNYRSTGHILASAAH 331 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENKK--KSALITA 394 N L + + + V + A + EEA ++ + K + A++ Sbjct: 332 LIAHNEGRLGKTLFSEGEDGEQVTVTGAWDSGEEARAVGEEIEALQRAGHKLSEIAILVR 391 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 R + G+ + G + L + D +A +V P Sbjct: 392 ASFQMREFEDRFVTLGLPYRVIGGPRFYERAEIRDALAYLRCVNSSADDLAFERIVNVPK 451 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G + V + +R+ Sbjct: 452 RGIG------------------------------DATVKQIHDVARAVGLPLQEATRVLT 481 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 E +EL + + + ++ + Sbjct: 482 ESEELKPKVRATLRGVVEAFGRWREQARVLSHTELAEIVL-------------DESGYTE 528 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKA--NAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 +W ++ + + E ++ N +++ I+ ++D + + I+ Sbjct: 529 MWQKDRSAEAAGRLENLKELVRSMEPFENLSGFLEHISLVMDTDN----GAGEDAVQIMT 584 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L FDT+ L G EG++P A + + E+ A A Sbjct: 585 LHSAKGLEFDTVFLPGWEEGLFPHQRALD---------EQGKAGLEEERRLAYVGITRAR 635 Query: 693 GTRHLIYTRSLRENN--IPTIASRWLQRLLVL 722 + + + R + T+ SR+L L Sbjct: 636 ASARIFVASNRRIHGMWNSTVPSRFLDELPDA 667 >gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400] gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB 400] Length = 727 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 78/705 (11%), Positives = 175/705 (24%), Gaps = 125/705 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 S+ T +A E+R ++ G + I + + + NL Sbjct: 56 SILAVTFTNKAAAEMRERVEKVVGTNMGRM-WIGTFHGLAHRLLRTHYQDA-NLPQSFQI 113 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 + + +L L R++ + + Sbjct: 114 IDSDDQLRLLKRILKSLNLDEKQYPPRQAQGYINGK---------------------KDQ 152 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + + + + L I K + E L+RA L Sbjct: 153 GLRPKHI-------DAGGFPIEQNLLNI-YKVYQESCDRAGLVDFAEI---LLRAHELWL 201 Query: 223 MKG--------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTI 274 K I++ + + +A N A V+ D W Sbjct: 202 NKPHLLAHYQERFRHILVDEFQDTNAIQYAWIRVLAG--NTANVMIVGDDDQSIYGWRGA 259 Query: 275 TEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPP 334 ++ + + + G + + + Sbjct: 260 QIENLHRFLKDFS--------------------------GATTIRLEQNYRSTANILNAS 293 Query: 335 DTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALI 392 + N D L ++ K +++ A NE +EA I + ++ + A++ Sbjct: 294 NAVIANNPDRLGKELWTEDKDGEPISVYCAFNEMDEAKFIVGRISDWHEKGGSLSECAIL 353 Query: 393 TADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKH 452 +R ++ G+ I G+ + I ND A +V Sbjct: 354 YRSNAQSRVLEEAFLHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNQNDDAAFERVVNT 413 Query: 453 PLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRL 512 P G + R+ Sbjct: 414 PARGIGDRTLDIIRSTARQH------------------------------ELTLWQACVS 443 Query: 513 SEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKL 572 E+K LA + I + ++ +T+ D + + Sbjct: 444 LIEEKVLAGRAANAINGFMELIIAMRTDTADMLLYRMADDVIDRSGLRTMYEAEKGEKAQ 503 Query: 573 PNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILG 632 + E T + F E + NA ++ + + ++ Sbjct: 504 ARIENLNELVTAARSFEMPEELEDMGELNA-----FLSHAALEAGEGQADAFTDAVQLMT 558 Query: 633 TLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMAN 692 ++ L F + + G+ EG++P S + L ++ + + Sbjct: 559 LHSAKGLEFPMVFMAGVEEGLFP--------------SKMALDEGDRLDEERRLCYVGMT 604 Query: 693 GT-RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQ 736 + L + + R + F + ++ R Q Sbjct: 605 RAMQKLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIRAQ 649 >gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03] Length = 770 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 82/690 (11%), Positives = 192/690 (27%), Gaps = 120/690 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPP--- 102 ++ T +A +E+R + +T +I + + + N Sbjct: 54 NILAITFTNKAAREMRER--AVALNPATSETLIATFHSMCVRILRRE-ADHIGYNRNFTI 110 Query: 103 VSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETE 162 V ++ + R++ L P+ + I AKN D++D I E Sbjct: 111 VDPGEQRTLMKRILKNLN---------LDPKKW--NERAILGTISNAKN--DLLDEIAYE 157 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL 222 + + + K + E L A + +R ++ Sbjct: 158 HQAGDMYTQIV---------------AKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNP 202 Query: 223 M-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + I + + A +L+ +A+ V+ D W + Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRFKNICVV--GDADQSIYGWRGADMQ 260 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + +P+ + L + ++ ++ V R Sbjct: 261 NILDFEK-----DYPEAKVVLLEENYRSTKKILQAANEVIKNNRNRRPK----------- 304 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE---NKKKSALITA 394 K+ + A++ER+EA+ +A + + E N K A++ Sbjct: 305 ----------KLWTQNDEGEQIVYYRANDERDEAVFVASTIDNIVREKVKNFKDFAVLYR 354 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 +R ++ L + I + G + + S LN I +D ++ +V P Sbjct: 355 TNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDVISYLNLIANTSDNISFERVVNEPK 414 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 G R + ++ +L A + Sbjct: 415 RGVGPGTLEKLRNFAYEQNMS----------------LLYASANIMLSPIKGKA------ 452 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 + ++ + + ++ + Sbjct: 453 ---------AQGVYDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSR 503 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 + EE +++ F + G+ + + L +++ + ++ Sbjct: 504 IENIEEFMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAEVTLMTLH 563 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 ++ L F + L G+ EGV+P + A + L + Sbjct: 564 AAKGLEFPVVFLIGMEEGVFPLSRASEEPDELEEERRLA--------------YVGITRA 609 Query: 695 RHLIY-----TRSLRENNIPTIASRWLQRL 719 +++ TR+L SR+L+ + Sbjct: 610 EEILFLTNANTRTLFGKTGYNRPSRFLREI 639 >gi|284031137|ref|YP_003381068.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836] gi|283810430|gb|ADB32269.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836] Length = 295 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 20/251 (7%) Query: 757 PKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNII 816 S S ++ P R + +L RGT+ H ++ Sbjct: 4 AAAVDVPAHPRAALSPSRAADFMSCPLKYRFRVVDRLPEK-----PSAAAVRGTVVHAVL 58 Query: 817 TELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE---- 872 L + T E LM + + +++ E + Sbjct: 59 ERLYDLPRGQRTLEQAALMLEPQWQRVLADEPEVAQLFEDDAEGTELAKWLAEAHQLLGK 118 Query: 873 ----KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET 928 + +++E + + +ES G+ L G+ DR+D+ +G + + DYKTG +P + Sbjct: 119 YFTLEDPNALEPAERELYVETELES-GLTLRGYVDRLDVAPTGEIRVVDYKTGRSPSEFF 177 Query: 929 AQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSE 988 K + Q+ A L + + L + L + + ++ + + Sbjct: 178 EAKAL-FQMKFYALVLWR-----LRGVVPSMLQLVYLGNGEIVRYVPDEADLRACERKVG 231 Query: 989 KSLKNLIEIVT 999 + + + Sbjct: 232 ALWEAITRALE 242 >gi|256832430|ref|YP_003161157.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM 20603] gi|256685961|gb|ACV08854.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM 20603] Length = 298 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 70/265 (26%), Gaps = 27/265 (10%) Query: 769 TYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNT 828 S S P R I +L RGT+ H+++ L ++ Sbjct: 13 ALSPSRALDFRQCPLLFRLRTIDRLPERESV-----AAVRGTVVHSVLERLFDVAPDERD 67 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKI---SHSFLE--HEEKIQSSIEKIFV 883 + + E+ P + + + + E + + Sbjct: 68 VGFATSLVDGVVQEL-VESRPAVKAEFDVATIEGVVTDARALVARYFELENPQMLHPAAR 126 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 + + + G DR+D+ G + + DYK+G P Q+ A Sbjct: 127 EVTLSSYVGRRSVT--GVVDRVDVAPDGAIRLVDYKSGRAP-APQYSGNAAFQMRFYALL 183 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 + + R A L + L ++ + + + + + Sbjct: 184 VAR-----VKGRLPAMLRLVYLGDGKIMESAPTNGDVSWVEASIARVWDGIERAID---- 234 Query: 1004 GEQPFISHLRLSEKSNIQSEYDHLA 1028 F+ K + + Sbjct: 235 -TDGFVPRRS---KLCGWCSFQQVC 255 >gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645] gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645] Length = 1040 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 95/901 (10%), Positives = 217/901 (24%), Gaps = 93/901 (10%) Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + A + + + + + + AR + R D L + + Sbjct: 198 ARKPPQAQEIDAAKKLLLEAPLDKRMTKARNEDLARFDEGDFGGFLEKGLAKKVIDDDLS 257 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLH--ALKNEKYGMWWLLAADFLKIASKYWTERLVEL 202 + + L + + L F + + Sbjct: 258 YYR--AEIPADVARAYQTLISAAACEPYNLLVRQTEGAFQLLDRF-DAIYRRLKFQSQSY 314 Query: 203 NASSPVGYQIALMRAE----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAI- 257 + A+ + + G +++ + PA ++ VA Sbjct: 315 RFDDVTRFLSRQADADTPTRVAYRLDGHINHLLLDEFQDTSPAQWSVLRPVARRVTTQPL 374 Query: 258 --VLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGN 315 D W + + + LA + + V + Sbjct: 375 GSFFCVGDVKQAIYGWRGGVAEIFEEVVAELGELD--EAELAVSFRSSPVVIDFVNLVAR 432 Query: 316 VSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIA 375 + +T + E + +E + +A Sbjct: 433 NLHRHPSLDRFEDGVKRWQTMFADHSTAKTSLPGYVSVETA---RYGEEGDPTDEMLFVA 489 Query: 376 IA---LRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 A R D + ++ R++ EL + G+ G L+ + ++ S Sbjct: 490 AAERVCRSLEDSPGSEVGVLVRTNAAVRKMIFELRQRGVTASEEGGGTLTDSASVQLMMS 549 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL I D +A + PLA +++ +L + Sbjct: 550 LLQWIDHPADTVARFHVQNSPLAATIGLTPHMAAR----------------KSSELAQAL 593 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 + + + W L E V+ +++ + + +T + Sbjct: 594 RNELLVFGYGAMLRRWSQVLVEIGNSRERRRVEQLVR-----MAHAYQPKATLRTSDFVE 648 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 + + S++ I ++ + + +D+ Sbjct: 649 FVET--------------------QRVADPQASAVRVMTIHQAKGLQFDVVVLLDL---- 684 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + S F++ + + + F + Q + Sbjct: 685 ------DHEFPGRSPNFVIERAAPLSPVTSIVRYANKDVQKVLPPRLQQMFTNASSQQAV 738 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + + A H++ L + N Sbjct: 739 ------EELCVLYVAITRAVHAMHVMIKPPSAREKKTPRTMAGLVTEALEVKRQPQGNDV 792 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 +W L ++ P L + L P + LK Sbjct: 793 VFAMGDAEWFAHLAAADAPRLHRTPVVARRLPIAMAAAKSQRGETLA--PSKLEGGPRLK 850 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITEL-IKKRINKNTPEINHLMKQIIDSHFEKENLPPH 851 + + H G++ H + + + + + I+ ++L Sbjct: 851 VANLLHTTDS-TGRLFGSVTHAWLERIEWLNDFELDETRFRTIARAIVGDALNVDHLLAR 909 Query: 852 ID-IIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 I + ++ + S+ V AI G G DR+ L K Sbjct: 910 FRKTIEQPQLRQLLDRQTAPRPQGVSAGATAEVRQEQTFAIAVEGGIQNGAIDRLVLWKE 969 Query: 911 G----FVDITDYKTGDNP-----KKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLF 961 G D+ DYKT P PQ++ A++ ++ + V Sbjct: 970 GDEVVAADVIDYKTDRLPEDDAETLADRAAYYRPQVNAYRRAVQQ--MWRLPEKAVIGHL 1027 Query: 962 Y 962 Y Sbjct: 1028 Y 1028 >gi|264676500|ref|YP_003276406.1| exodeoxyribonuclease V, subunit gamma [Comamonas testosteroni CNB-2] gi|262207012|gb|ACY31110.1| exodeoxyribonuclease V, gamma subunit [Comamonas testosteroni CNB-2] Length = 1195 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 102/913 (11%), Positives = 240/913 (26%), Gaps = 84/913 (9%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L T++ PL L + V + + + E G + + Sbjct: 31 LADTVLAWLAAHPL--QALEPEIVLVQSNGMAEWFKMRMAEQQGVCAAAQVEL----PAR 84 Query: 86 EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANA 145 + +L + P S + + + RL+ + L + P + P P Sbjct: 85 FVWRSYRQILGRHEVPRESPLDKTPMIWRLMRLLPQCLGE--PAFAPIANFLRPGEPQRL 142 Query: 146 IWLAKNLADIIDIIETEEKK----WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVE 201 + LA+ LAD+ D + WE + + L + W + L E Sbjct: 143 LQLAEKLADLFDQYQIYRADWLAAWEKGEDVLRTAGRPDAPVPEGQL-WQPQLWRKVLAE 201 Query: 202 LNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANHPNG 255 L+ + AL+ + L +++ G + + + +S +A H Sbjct: 202 LDEQERAATRPALLARILDALQSGQPPVTPLARRVVVFGMSQMPLSLMQFLSGIAQHSQV 261 Query: 256 AIVLPGLDCHIPTAIWNTITEKSTNITSSNT---------TYSTHPQYSLAKLLDFLDIK 306 I +P + + ++ L + Sbjct: 262 LIAVPNPCRFHWADAIDGRELLRQQRRRHADKGGKDLAQIPLAAMHAHAHPLLAAWGRQS 321 Query: 307 REDVKRLG-----------------NVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKI 349 R+ V++L +V +E ++ + + + E+ Sbjct: 322 RDYVRQLDAFDTTGDIAVQWGWPRVDVYDEADASELIDAPLLVQVQQRIRDLVPMSEHPA 381 Query: 350 PNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN---------KKKSALITADRNLAR 400 I + +A E + L L E ++ ++ A Sbjct: 382 VEIAAADQSIVFHKAHGLVRELEVLHDQLLQWLAEPAAAGRAVLAPREVVVMLPSIEEAA 441 Query: 401 RVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 + I DI+ +++ + L LL + + L+ P Sbjct: 442 PAIRAVFGQYGRHDARHIPFDIADVGARASSPLVTALQWLLKLPQQRCRLSELCDLLDVP 501 Query: 454 -------LAKFGFPEKYLSRAKNALELVALRGNKNSYD----------IMDLKSLVLDRI 496 LA P+ A + + L+ ++L Sbjct: 502 AVAARVGLAADDLPQLTHWMAGAGIRWGLNHAQRAQLGLAACGDPNSAWFGLRRMLLGYA 561 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 + Q E + L + + L+ T + + Sbjct: 562 SGPALEAAFDEAQVFAGMEPYDEVGGLTAELAGSLASLLGRMLQWWQTAATAAAPEVWAQ 621 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L + L + + G + + + Sbjct: 622 RFRSLMDDFFVAQGDEDQALCAALDTALVGWQAACEQAGFEALIPLEVAQEAWLQALSEP 681 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAK-NPFLSRVMQSDLNLK 675 + + ++ + + R + F+ + L G+N+G +P+ + + L + Sbjct: 682 ALNQRF-RAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRVDFDLMALPGQQRPGD 740 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKK 733 A + + + + L + + R +N S + +L + Sbjct: 741 RARRDDDRQLMLDALLSARSKLYISWAGRHVRDNSEQPPSVLVSQLRDYL-RQGWQGEDS 799 Query: 734 RGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKL 793 G + L + H +P E +F+ ++ A ++ Sbjct: 800 AGLSASERGELLLAQRTRQHPLQPFSRSYFEQASGLSTFAREWYGAHEERAAQVLPVVAA 859 Query: 794 DFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHID 853 L H ++ R+ + L++ + I Sbjct: 860 FEPDPEVPLTLARLTEFLRHPA-RSFLRNRLQVRFEQDEELLEDDELFSVDGLTAYGLIQ 918 Query: 854 IIWRHLFHKISHS 866 + + + +++H Sbjct: 919 QLQQGVRTQLAHD 931 >gi|156744107|ref|YP_001434236.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156235435|gb|ABU60218.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 1180 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 86/889 (9%), Positives = 206/889 (23%), Gaps = 79/889 (8%) Query: 43 LLASVTIYVPTKRAIQELRSEFIEITGKKSTILP---IIKSLGDVVEEKFTADLLLSYNL 99 AS+ + RA +E+R + ++ L I + Sbjct: 241 DPASILALTFSNRAAEEMRERIVAALRHEAPRLVGRIEISTFHSWGLNVLRIYGARLGLP 300 Query: 100 NPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPL----------------SLPISPA 143 RLL+ A L ++ +L D+ + + SP Sbjct: 301 VDA-----RLLDTADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAISRIKDELWSPD 355 Query: 144 NAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELN 203 LA A + + A++ + A L + L E Sbjct: 356 EFSRLADVEAQRLIAAAERDYPGATRKAIEARERAARQAAALRELAQVYPRYEAMLREAG 415 Query: 204 ASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 A + +A +H + +++ A+ L+ + V Sbjct: 416 ALDYGDLIVLPAQALRDHPAIAADLRRRYHYLLVDEFQDINYASGELIRLLDGGRGR--V 473 Query: 259 LPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSN 318 D + + + + + + L + L + + + Sbjct: 474 WAVGDAWQSIYRFRGASAANLDEFPRYYPNAR--IFYLTRNYRSLQPILDAGAAVMSGDP 531 Query: 319 EMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIAL 378 R ++++ + + A ++E ++A + Sbjct: 532 RAAERPPLVAQRNGGGAHTVVEW---------------------AAPRSQDEYAALARDI 570 Query: 379 RMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTL-HSSILTSLLNAI 437 + + A A R R + Sbjct: 571 LRRVRLRNRWLASGCAARCRMPRSGTMRRVARRPPLSTRQWRFGDHAILCRTHEQAGAVA 630 Query: 438 FKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIA 497 L + G + A+ A + L L+R+ Sbjct: 631 AVLETHGIPVDYINDVFDTPGVKDALAVCAQVGATNSAGLLRALTMPEHRLDPADLNRLV 690 Query: 498 TQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLT 557 + ++ + L I +V + L+ + + + Sbjct: 691 DLARRSQQALPRAARDPQIIACLSEAAQQTLARIRIIVEALEGEGDAWQVLT-AYLFRHS 749 Query: 558 VTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGET 617 + + L ++ + + + +A +ID I L Sbjct: 750 RAMRARLIHAAQGHIRAQRELAALGQLLAIARNFVRAAAPDECDASHFIDYIRALRAAGV 809 Query: 618 VKPK--IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLK 675 + + ++ ++ L F + + GL EG + Sbjct: 810 RPRSSIGGQVDAVRVMTVHAAKGLEFPIVYVPGLQEG-RFPVRGNQRGIPLPAGLIRGPI 868 Query: 676 TAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRG 735 +E+ + M L+ +RSL + +G Sbjct: 869 ESEEQEERYLLYVAMTRARDRLVLSRSLTCGDGAKS-----------AERSSLLPGDGQG 917 Query: 736 QCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDF 795 R ++ P S I L + + +L Sbjct: 918 NGAPWRVRFIESAVNCPVPTPDMRLQDTPLPRMPLPASSI-DLDGCKRRFLYQYVYQL-- 974 Query: 796 IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDII 855 + L ++ P ++ ++ ++ L + Sbjct: 975 ---YDDLSPFLRMHQTIRECAKILTEQARRDALPADEAGLRTLVFGQLQRYELDSVLYAD 1031 Query: 856 WRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 + H+ ++ + V+ + + I + DR Sbjct: 1032 DYA-AEALRHARTVWDDLRTGRLSPECVDRRVIVRRPAGTIEV--RIDR 1077 >gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] Length = 707 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 78/692 (11%), Positives = 196/692 (28%), Gaps = 127/692 (18%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKS--TILPIIKSLGDVVEEKFTADL-LLSYNLNPP 102 ++ T +A +E+R ++ + S + + + ++ L Y+ N Sbjct: 53 NLLAVTFTNKAAEEMRERIEKLIAQDSEDIW---MSTFHSIAVRILRREINKLGYDRNFT 109 Query: 103 V-SNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 + + + +I + P K +++ I Sbjct: 110 IYDTTDQQALIKDIIKNQLDLDPKQFKP-----------------------RSVLNQISN 146 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEH 221 + D+ A + ++ + + + ++L E NA + + E+ Sbjct: 147 AKNDLIDVSAFQQGVGS-YFERV---VGEIYESYQQQLKENNALDFDDLIMKTVELFEEY 202 Query: 222 LM-----KGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITE 276 + + I++ A RL++ +A V+ D + Sbjct: 203 ELVLEYYQNRFRYILVDEYQDVNHAQYRLINLLAEDHKNICVV--GDDDQGIYGFRGADI 260 Query: 277 KSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDT 336 + + Q + KL + V GR Sbjct: 261 SNILDFE-----EDYSQTEIIKLEQNYRSTERILDAAYEVVRNNRGRKPK---------- 305 Query: 337 SDMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA---LRMSLDENKKKSALIT 393 K+ + + +A E EEA I LR + A++ Sbjct: 306 -----------KLWTENDQGAPIKQYKARGETEEAEYITEEIMKLREEEALDYDDFAVLY 354 Query: 394 ADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP 453 +R ++ + GI I G+ + + L ++ +D + + ++ P Sbjct: 355 RTNAQSRVLEEVFRKQGIPYRIIGGLKFYERKEIKDILAYLRVLYNPSDDICLQRIINVP 414 Query: 454 LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLS 513 + + + R+ ++ +++ Sbjct: 415 -------------------------------KRGIGATTVGRLNNFAAQHNISLYEAVQR 443 Query: 514 EEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP 573 E+ + ++ L++Y + L ++ L+N+ ++ + Sbjct: 444 VEEIDSINSRCSGQVRRFNELMSYFRQRADELNALELTKELLDETDYLKNLRQEDTDQAR 503 Query: 574 NLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGT 633 + E K L + + IE I + + V ++S + ++ Sbjct: 504 S--RIENIKELLTDIEEYIEQEGDITLGGY-----LEEVALITDVDNLEAEASAVVMMTL 556 Query: 634 LESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANG 693 ++ L F + L G+ EG++P + + + E + + Sbjct: 557 HSAKGLEFPVVFLSGMEEGLFPHSRSFD--------------DKEAIEEERRLCYVGMTR 602 Query: 694 TRH-LIYTRSLRE----NNIPTIASRWLQRLL 720 L T +L SR+++ + Sbjct: 603 AEEKLYLTHALSRKIYGQRSYNPVSRFIEEIP 634 >gi|107100130|ref|ZP_01364048.1| hypothetical protein PaerPA_01001151 [Pseudomonas aeruginosa PACS2] Length = 1157 Score = 93.1 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 100/922 (10%), Positives = 240/922 (26%), Gaps = 73/922 (7%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVV 85 L V R PL PL V ++ + Q L+ E + I + +V Sbjct: 11 LRDLAVSWMRRYPLAPLESERVLVH--SNGIAQWLKLALAEDPREDGGGGGGIAAALEVQ 68 Query: 86 ----EEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPIS 141 +L P VS + + RL+ + L L+ Sbjct: 69 LPAQFLWQAYRAVLGRESIPEVSELDKAPLTWRLMRLLPGLLERPEFRTLQRF-LADDAD 127 Query: 142 PANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYG---MWWLLAADFLKIASKYWTER 198 LA+ LAD+ D + W D + ++ + ++ W Sbjct: 128 LRKRHQLAERLADLFDQYQVYRGDWLDDWSQGRDQLRTANGQARPLGADERWQAELWRAL 187 Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252 L ++ A S + + R E L + +++ G + T ++ +A Sbjct: 188 LADVGADSLARSRSGVHRRFIEALRSASAAPRALPRRVVVFGISSMPAQTLEALAALARF 247 Query: 253 PNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 + + H I ++ ++ Q++ L + Sbjct: 248 SQVLLCVHNPCRHHWADIVADKDLLRHEYRRQQRRAGVPADLDEDRQHQHAQPLLAAWGK 307 Query: 305 IKREDVKRLGNVSNEMYGRS------------------MVISKSFLPPDTSDMRNTDILE 346 R+ + L + + R+ + + E Sbjct: 308 QGRDYINLLDSYDDPDSYRNLFGEVNGGRIDLFSEEAPHGLLGQLQDDILELRPLAETRE 367 Query: 347 NKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN----KKKSALITADRNLARRV 402 + P + + + A + + E + L + + + ++ D N Sbjct: 368 HWPPVAPRSDASIRFHVAHSAQREVEILHDQLLARFNADPSLKPRDVIVMVPDINAYAPH 427 Query: 403 KLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 + + I ++ L LL I L+ P Sbjct: 428 IEAVFGQVPRDDQRFIPYTLADQGQRGREPLLIALEHLLKLPDSRFAVSEILDLLDVPAL 487 Query: 456 KFGF--PEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVP 506 + F E L+ +E +R ++ L + + V Sbjct: 488 RRRFGVDEADLATLHRWIEGAGVRWGLDAAQRERLGLPAGLEGNSWRFGLRRMLLGYAVG 547 Query: 507 HWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCL 566 + + + L + + L+ + + + L V Sbjct: 548 EGAALQGIQPYDEVGGLDAALAGPLAVLLERLEVAYAELAEPATPAQWGERLQALLTVFF 607 Query: 567 DEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSS 626 + H + L + + L + +D + + + Sbjct: 608 EAHDERDELLLTQLLQLLERWQEHCACAAFAEPLPISVIREAWLGGLDQGGLNQRFLAGA 667 Query: 627 TLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAH 686 + + R + F + L G+N+G +P+ + F ++ + Sbjct: 668 -VSFCTLMPMRAIPFRLVCLLGMNDGDYPRQQSPLDFDLMRNDYRPGDRSRREDDRYL-L 725 Query: 687 DFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRK 744 + + L + R +N S + +L + + G+ L + Sbjct: 726 LEALLSAREQLYVSWVGRSIRDNGERPPSVLIGQLRDHLAAGWRLDPDGDGEALLRALTQ 785 Query: 745 LDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPD 804 QP +R P + ++++ + ++ + + Sbjct: 786 --EHPLQPFSRRYFHDAPEQGVDGLFTYAREWREVHSEDDIAVPDAEASLPPLELEGALG 843 Query: 805 RTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWR-HLFHKI 863 N + ++R+ + + + FE + L + Sbjct: 844 LRALAEFLANPVNAFFQQRLKVRFDD--EQLTGNDEEPFELDALDNWKLQFELTERMKRW 901 Query: 864 SHSFLEHEEKIQSSIEKIFVNI 885 + + + + + V Sbjct: 902 VER--DWDAEGLPAQLQAQVER 921 >gi|269215901|ref|ZP_06159755.1| conserved hypothetical protein [Slackia exigua ATCC 700122] gi|269130851|gb|EEZ61927.1| conserved hypothetical protein [Slackia exigua ATCC 700122] Length = 890 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 67/594 (11%), Positives = 154/594 (25%), Gaps = 83/594 (13%) Query: 491 LVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSI 550 L L R + P L E A + D ++ + + + + Sbjct: 281 LALGRSRCLTDFLLSPFSGYSLREAYAIDAAVRADRLMTVDACMDRVIAGREESRYMSEL 340 Query: 551 SDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIIT 610 + + C V + + + +E + + + E + + ++ + Sbjct: 341 VEDLDADILCGYLVESASRHRDGDEAYRQEQISAIRAWRQCAEAVRFVGGCIEDAFELFS 400 Query: 611 RLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNP-FLSRVMQ 669 V + ++ + + K+P +R + Sbjct: 401 A--ASIDVSRASGPDPRVVYARQEDAAGFEPGRFDVVVACDMTTSSYPVKDPSDAARTLL 458 Query: 670 SDLNLKTAEKYIGQAAHDFEMANG--TRHLIYTRSLRENNI-PTIASRWLQRLLVLGGTD 726 L + +E I + F A R L + P LQ L Sbjct: 459 GKLGVAGSEPPIDRQRRRFMRALRLAKSSFAIERPLNDEAAAPAYPCAVLQEYLDACKDA 518 Query: 727 FFDNLKKRGQCYLDWTRK---------------------------LDYTTKQPHYKRPK- 758 D + + L + P+ Sbjct: 519 PDDRMARPFDLPASCADAARSIGEDALYENVVSSASPQKTKTTIELPRPGEIAPASLPRL 578 Query: 759 ---PFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNI 815 P +S S+I++ + PY + R + + ++G H I Sbjct: 579 VLRHALPEGGCAPVFSPSQIERYLECPYRWFVERRVNPR---GIDEGFGPLEKGDFAHAI 635 Query: 816 ITELIKKRINKN----TPEINHLMKQIIDSHFE-----------------KENLPPHIDI 854 + ++ + I++ T + ++D+ F+ + ++ Sbjct: 636 LHDMYAQLISEGVSKVTDAVVPHALDVLDACFDARLSAQRAVDAVDVFSSRLIATSEMER 695 Query: 855 IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMA--IESIGIHLTGFADRIDLLKSGF 912 H + E + + + + G+ + G DR+D +G Sbjct: 696 REVGELRAALHRLVRFEPSFLPHGRPVMLERRISLEDGVAYAGVRMRGTIDRVDATDAGC 755 Query: 913 VDITDYKTGDNPKK-----ETAQKLIDPQLSLEAAALKAGSFSQIDC--------RKVAN 959 + DYK G Q + A ++ + +VA Sbjct: 756 AVVVDYK-GSATSAHDSFSADGTVQGKVQTLIYAQMIRRSLGLDVGAAVYLGYRDARVAG 814 Query: 960 LFYIRLKQKFKIDCITNDKKK------YSADELSEKSLKNLIEIVTLLQNGEQP 1007 F R I S ++L + + + + ++ +Q G+ Sbjct: 815 AFDARRFGPEHFPGIKPKGAACGSGGRMSFEDLLDATEERVARALSRMQAGDIA 868 >gi|160895969|ref|YP_001561551.1| exodeoxyribonuclease V subunit gamma [Delftia acidovorans SPH-1] gi|160361553|gb|ABX33166.1| exodeoxyribonuclease V, gamma subunit [Delftia acidovorans SPH-1] Length = 1174 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 97/883 (10%), Positives = 218/883 (24%), Gaps = 108/883 (12%) Query: 25 LLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDV 84 +L T++ PL+ +L + V + + + E G + + Sbjct: 19 VLADTVLAWLAAHPLD--VLEPEVVLVQSNGMAEWFKMRMAEQLGVCAA----ARVELPA 72 Query: 85 VEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPAN 144 + +L P S + + RL+ + L D P + P P Sbjct: 73 RFVWRSYRQVLGRQAVPRESPLDKTPMTWRLMRLLPQCLHD--PAFAPIAGFLRPGEPER 130 Query: 145 AIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIAS------KYWTER 198 + LA+ LAD+ D + W D ++ M + + W Sbjct: 131 LLQLAQRLADLFDQYQIYRADWLDAWEAGHDVLPMPLRPGVADATVPEGQQWQPRLWRAV 190 Query: 199 LVELNASSPVGYQIALMRAEAEHLM------KGTKGPIIIAGSTGSIPATARLMSTVANH 252 L EL+ + L L +++ G + + ++ +A H Sbjct: 191 LAELDEDQRGATRARLQGRVLAALQSGEAPAAPLARRVVVFGISQLPLSLLEFLAAMARH 250 Query: 253 PNGAIVLPGLDCHIPTAIWNTIT---------EKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + +P + + ++ L + Sbjct: 251 SQVLLAVPNPCRFHWADAIDGRELLRMARRRQPLRGGRDLAQLPLEAMHAHAHPLLAAWG 310 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFL----------------PPDTSDMRNTDILEN 347 R+ V++L + + + L + E+ Sbjct: 311 RQSRDYVRQLDAFDTTGAAAQLQMPRVDLFDETDAEDLRTAPLLAQVQQRIRDLVPLAEH 370 Query: 348 KIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDEN------------KKKSALITAD 395 + + + A + E + L L + ++ Sbjct: 371 PPLEVARADRSIVFHSAHSVVRELEVLHDQLLQMLARPPDPAQPGQAPLAPRDVVVMLPS 430 Query: 396 RNLARRVKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIAT 448 A + I DI+ +++ + L LL + + Sbjct: 431 IETAAPSIRAVFGQYGRHDPRHIPFDIADLGARASSPLAVALQWLLRLPQQRCRLSELCD 490 Query: 449 LVKHP--LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL----------KSLVLDRI 496 L+ P A+ G L + + +R N+ L L R+ Sbjct: 491 LLDVPAIAARMGLAADDLPQLTRWMAGAGIRWGLNAPQRGALGLQACGEHNSAWFGLQRM 550 Query: 497 ATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 Q+ E + L + + L+ G + + Sbjct: 551 LLGYAGGVAQDGQAFGGIEPYDEVGGLSAELAGVLAALLERMLAWWREAGRPATPEAWAQ 610 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L L+ + G + + ++ Sbjct: 611 RFRALLQDFFKAQDDEDEAMLAALDAALTDWQRACEQAGYADAVELGVAQEAWMQALEQP 670 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 ++ + ++ + + R + F+ + L G+N+G +P+ ++ F + Sbjct: 671 SLSQRF-RAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRATRSDFDLMALPGQQRPGD 729 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE---NNIPTIASRWLQRLLVLGGT-------- 725 + E R +Y +N S + +L T Sbjct: 730 RARRDDDRQLMLEALLSARRALYISWTGHHVRDNSEQPPSVLVSQLRDYLETGWRGEGGQ 789 Query: 726 --------------------DFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEA 765 + + + + D T P P + Sbjct: 790 PLLAQRTQQHPLQPFSRRYFEEGSPWTTYAREWRAAHAQSDGTDVLPALPAQPRPPFVPD 849 Query: 766 QPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDR 808 + + + + P Y R+ L++ F D Sbjct: 850 ASAPLTLARLTDFLRHPARAYLRQRLQVRFEQEDNPVVDEELF 892 >gi|33240540|ref|NP_875482.1| exonuclease V gamma subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238068|gb|AAQ00135.1| Exonuclease V gamma subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1103 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 91/723 (12%), Positives = 198/723 (27%), Gaps = 54/723 (7%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLG 82 L L R + P SV I V T + L + G + I Sbjct: 10 AEWLAEVLAAQLRLNKPKP--FQSVEIMVNTWPTSRWLSEQIATFNGISALI--EFPFPN 65 Query: 83 DVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISP 142 + + L L P + Q E+ ++ + + + + Sbjct: 66 SHLRKFVQLFLGLEVTSKDPWNTNQLTWEIIDVLPKLLKEEESKHLHEWIQKGSNNNKEL 125 Query: 143 ANAIW-LAKNLADIIDIIETEEKKW-EDLHALKN------EKYGMW--WL-LAADFLKIA 191 IW LAK++A+ I+ L + W L LK Sbjct: 126 DKRIWTLAKSIANTINEYILYRPDVIAQWWNLDSKPTKSLRDLPPHIKWQPLLLRLLKTK 185 Query: 192 SKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVAN 251 K L + + EH K ++I G + P L+ +++ Sbjct: 186 IKSEPICLQINEVVTRLKR--------KEHSSKELPRDLLIFGVSSLAPIQIELIQALSS 237 Query: 252 HPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLDIKREDVK 311 N I L + + E + + L + + + + Sbjct: 238 VVNVQIFLLTPGQDLWKRCKSRREELGNDWKVPMDGMWMLKTPRIEASLGRMGSEFQQLL 297 Query: 312 RLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALI--------- 362 + + + T + + LE ++ + + L Sbjct: 298 EGSGEYQLGEWQEKDLFSMPVKIATYNSKEPTFLEQLQESLVVNKASIQLHRKHKDNSLI 357 Query: 363 --EADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARRVKLEL------TRFG 410 E+ +R + I + L + ++T + + T Sbjct: 358 FLESPGQRRQVQLIRDQIIQWLATDDTLQPRDIIIMTPQVKRLAPLISSVFNDISATNVN 417 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFG--FPEKYLSRAK 468 + I+ + + ++ + + L+ +P + + + R Sbjct: 418 LPWKITDRSQIEKPGLIQFILEFIDIASSRLTALNLDRLLTNPALQNQFKLDQDEVDRIT 477 Query: 469 NALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELA--VLLVDH 526 L R + D + L+ + V + E D V+ Sbjct: 478 YCLYETGFRWGIDEKDRNGNSTHSLEWCLERWLLGIVLPNEPNFVEGDIAPFSSTFTVNE 537 Query: 527 ILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSS 586 I + L + + + + W + + ++ +E W E Sbjct: 538 ITKWWNLLSLLCKHLKALRNSRKSNQWVFQLKSIVTDLLENES---NRTWEGELFNITIE 594 Query: 587 LFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLIL 646 +S+ + + +I+T L E + +S + I R + ++L Sbjct: 595 NWSQDSNDC-ILNIQPLVIKEILTELFSLENGRFGH-RSGKITISALEPMRAIPHRVIVL 652 Query: 647 GGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLREN 706 GL+E V+P++ + F + L + + +HL+ T + R+ Sbjct: 653 MGLDELVFPRSEERPSFNLLEQKRLLGDPNNCDKDRYV-LLEAIMSCRQHLLITWNSRDE 711 Query: 707 NIP 709 Sbjct: 712 KTG 714 >gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] Length = 813 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 77/711 (10%), Positives = 171/711 (24%), Gaps = 108/711 (15%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 + T +A E+R + G + + + + + +D Sbjct: 54 EILAITFTNKAAAEMRERLNGLVGPRCRGM-WVSTFHSMCVRMLRSDAEKL--------G 104 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET---E 162 R + D K LY E L I P A +++ I T E Sbjct: 105 FTRNFTIYD---------TDDQKRLYKEIMAELDIDPKRFPVNA-----LMNRISTAKNE 150 Query: 163 EKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALM-----RA 217 + ERL NA + Sbjct: 151 LVVPSAFEKEAGD-------PVGKVASRVYSRLQERLKAANAFDFDDLLLYAYLLLKNHE 203 Query: 218 EAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 + + I++ + A + +A +V+ D W + Sbjct: 204 DVRSAYQQRFRYIMVDEYQDTNHAQYSITGLLAEGHKNIMVV--GDDDQSIYSWRGADLR 261 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + ++ + + Sbjct: 262 NILEFEQDYP--------------------------TAHTVKLEQNYRSVGNVLAAANAV 295 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALR--MSLDENKKKSALITAD 395 N K+ + + + A +ER+E IA + + + + A+ Sbjct: 296 IANNQHRKAKKLFTSAEDGDKIQVYMAADERDEGRWIAGEIEKQRAAGLSYNQVAVFYRT 355 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R ++ L R G+ I G + + L + D +A ++ P Sbjct: 356 NAQSRMLEDMLLRAGVPYRIVGGTRFFDRAEIRDVMAYLTLVVNPADDIAAKRVINVPRR 415 Query: 456 KFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNN------------ 502 G + + + G + + +L++ I Sbjct: 416 GIGKTTIERIEQFAREMGMTFMEGAELAIVDPELRASARQAIGEFVGLVNEARTYGGDLR 475 Query: 503 ------THVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKL 556 L E+ + A +++I + + + + Sbjct: 476 KVIEMIIDKSGLIGALQAENTDEARGRIENIQEFLGVVDEFTETHEDEDALYEAPTAEPA 535 Query: 557 TVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE 616 L V + + L++ E D I + Sbjct: 536 DAPALAPVPSSADAPAGSFYAFAGANELAAP----AEESPVRVLRGDSLADFIEWVRLRT 591 Query: 617 TVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKT 676 + E + ++ S+ L FD + + G+ E ++P + + L Sbjct: 592 DLDTVAEDGHAVTMMTVHSSKGLEFDCVFVAGMEETLFPHMNSVGDAAGIEEERRLA--- 648 Query: 677 AEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQRLLVLG 723 + + L T + SR++Q + Sbjct: 649 ----------YVAITRARKKLFLTCAYARQIFGQTSSNPISRFIQEIPSEL 689 >gi|183983094|ref|YP_001851385.1| hypothetical protein MMAR_3095 [Mycobacterium marinum M] gi|183176420|gb|ACC41530.1| conserved hypothetical protein [Mycobacterium marinum M] Length = 293 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 17/237 (7%) Query: 767 PRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINK 826 S S P R I +L RG++ H + +L + Sbjct: 14 RPALSPSRAADFKQCPLLYRFRAIDRLPEK-----PSTAQLRGSVVHAALEQLYALPAVQ 68 Query: 827 NTPEINHLMKQIIDSHF--EKENLPPHIDIIWRHLFHKISHSFLE--HEEKIQSSIEKIF 882 P+ + + + +L + + + + + L + + + Sbjct: 69 RGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLEDPRRFDPQS 128 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLE 940 ++ + + L G+ DRID+ +G + + DYKTG P A Q+ Sbjct: 129 CEQRVEVELADGTL-LRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFY 187 Query: 941 AAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEI 997 AL + L I L +D + + ++ + + Sbjct: 188 GVALFRS-----RGVLPSRLRLIYLADGQVLDYSPDRDELLRFEKTLMAIWRAIQSA 239 >gi|50119933|ref|YP_049100.1| exonuclease V subunit gamma [Pectobacterium atrosepticum SCRI1043] gi|49610459|emb|CAG73904.1| exodeoxyribonuclease V gamma chain [Pectobacterium atrosepticum SCRI1043] Length = 1132 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 90/735 (12%), Positives = 188/735 (25%), Gaps = 75/735 (10%) Query: 42 LLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNP 101 I V + Q L+ E G + I L V +L Sbjct: 28 DPFQQEVILVQSPGMAQWLQIELATDFGIAANIQ---FPLPGVFLWNMCRHVLPDIPKES 84 Query: 102 PVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIET 161 S +L L+ L L + LA +AD+ D Sbjct: 85 AFSKDAMTWKLMHLLP----DLLAQPDFSALNHYLQDDDNQRKLHQLAGRVADLFDQYLI 140 Query: 162 EEKKWEDLHALKNE-KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE 220 W L L A +T L + +RA Sbjct: 141 YRPDWIKAWQEGKLVDDLGGNQLWQSALWRALVDYTRELAQPEWHH-AILYQRFIRALEH 199 Query: 221 HLMKGTKGP--IIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN------ 272 P + I G + P + ++ +A H + ++ H + I + Sbjct: 200 AKTCPKGLPPRVFICGISALPPIYLQALNALAQHIDVHLLFTNPCRHYWSDIQDYKFLAK 259 Query: 273 -TITEKSTNITSSNTTYSTHPQYS--------------------------------LAKL 299 + + T T P + L L Sbjct: 260 LKARNRRLHRFDREQTDETRPLFRDLSQAETLFNDDGKQSINNPLLASWGKLGRDNLYLL 319 Query: 300 LDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDV 359 + +++ D + N + I + + T + ++ + Sbjct: 320 AELDNVQEIDAFVESDGENLLQTLQRDILELEDHAIVAVSHETQNTSAQKRRLEPDDRSI 379 Query: 360 ALIEADNEREEAISIAIALRMSLDENK----KKSALITADRNLARRVKLEL-----TRFG 410 + + E + L + ++ + ++ AD + + Sbjct: 380 DFHACHSPQREVEVLHDRLLAMMADDPDLMPRDVIVMMADIDSYTPFIQAVFGNAPDNRY 439 Query: 411 INIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA--KFGFPEKYLSRAK 468 + IS + SLL+ + L++ P +FG E+ L R + Sbjct: 440 LPFAISDQRARHAHPALQAVISLLDLPTSRFTAEQVLALLEVPALAARFGIQEEGLRRLR 499 Query: 469 NALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHVPHWQSRLSEEDKELAV 521 + +R + ++ DL + + + Sbjct: 500 LWVVESGVRWGLDDDNVRDLMLPPTGQHTWRFGLTRMLLGYAMDSQVGDWQGVLPYDESS 559 Query: 522 LLVDHILQCITPLV-TYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEE 580 L+ + + L+ + + DW L ++ + L E+ Sbjct: 560 GLIAELAGQLAELLMQIHQWRQRLSQPRLLVDWLPLCRELIETFFDADSETEAALALVEK 619 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLN 640 + + + D ++R +D E + + + + + R + Sbjct: 620 QWQHVIGMGTMAYYPQQVPISR--LRDELSRRLDQERLSQRFLAGA-INFCTLMPMRSIP 676 Query: 641 FDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRH-LIY 699 F + L G+N+GV+P+ F +M + + E +H L Sbjct: 677 FKVVCLLGMNDGVYPRTLPPLGF--DLMGRKIKRGDRSRRDDDRYLFLEALLSAQHKLYI 734 Query: 700 TRSLRENNIPTIASR 714 + R T Sbjct: 735 SYIGRSIQDNTRRYP 749 >gi|325274375|ref|ZP_08140468.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas sp. TJI-51] gi|324100491|gb|EGB98244.1| exodeoxyribonuclease V, gamma subunit [Pseudomonas sp. TJI-51] Length = 899 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 95/816 (11%), Positives = 208/816 (25%), Gaps = 73/816 (8%) Query: 26 LNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFI------EITGKKSTILPIIK 79 L +V R PL P L + V + Q L+ + G ++ Sbjct: 22 LRSLVVSWMRRYPLAP--LENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGIAAAIEVQ 79 Query: 80 SLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLP 139 G + + + + +L + P VS + + RL+ + + + L+ Sbjct: 80 LPGSFMWQLYRS--VLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRRF-LTDD 136 Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY-----GMWWLLAADFLKIASKY 194 L++ LAD+ D + W L ++ + ++ Sbjct: 137 GDLRKRYQLSERLADLFDQYQVYRADW--LRDWAAGEHVLNTARGERKALPPANRWQAEL 194 Query: 195 WTERLVELN----ASSPVGYQIALMRAEAEHLMKGT--KGPIIIAGSTGSIPATARLMST 248 W L ++ A S G + +I+ G + ++ Sbjct: 195 WKALLEDVGEKGMAQSRAGVHQRFIERINSLEQAPPGLPSRVIVFGISSLPAQALEALAG 254 Query: 249 VANHPNGAIVLPGLDCHIPTAI--------WNTITEKSTNITSSNTTYSTHPQYSLAKLL 300 +A + + H I ++ Q++ L Sbjct: 255 LARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQALHQHAHPLLA 314 Query: 301 DFLDIKREDVKRLGNVSNEMYGRSMVIS---------------KSFLPPDTSDMRNTDIL 345 + R+ + L + + + + + Sbjct: 315 AWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPATLLNQLQDDILELRPLAETR 374 Query: 346 ENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDE----NKKKSALITADRNLARR 401 P + A + + E + L + ++ + Sbjct: 375 ALWPPVDPANDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDTYAP 434 Query: 402 VKLEL-------TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHP- 453 + I ++ L LL + L+ P Sbjct: 435 HIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLDVPA 494 Query: 454 -LAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDL-------KSLVLDRIATQKNNTHV 505 A+FG E L +E +R ++ L ++ + V Sbjct: 495 VRARFGIRENDLPTLHRWIEGAGIRWGLDAEQRASLGLPAGLEQNTWRFGLRRMLLGYAV 554 Query: 506 PHWQSRLSEEDKELAVLL-VDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNV 564 ++ E + L I + L + ++S W + L Sbjct: 555 GVGEACDGIEPYDEIGGLDAALIGPLVALLDALDVACQALAEPATVSQWGERLHALLHVF 614 Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEK 624 L E L + S G + +D + + Sbjct: 615 FLAEDEHDEFLLIQ-LQDLRDSWLEVCETVGLQDPLPLTVVREAWLSGLDQGKLSQRFLA 673 Query: 625 SSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA 684 ++ + R + F + L G+N+G +P+ F ++ + Sbjct: 674 G-SVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRYL 732 Query: 685 AHDFEMANGTRHLIYTRSLRE--NNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWT 742 + + L + R +N AS + +L + N ++GQ Sbjct: 733 -LLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWQLNGAQQGQATQAGE 791 Query: 743 RKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQL 778 + L T++ + P + P E + L Sbjct: 792 QLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVL 827 >gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] Length = 1147 Score = 93.1 bits (229), Expect = 3e-16, Method: Composition-based stats. Identities = 88/883 (9%), Positives = 210/883 (23%), Gaps = 99/883 (11%) Query: 105 NIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNL---ADIIDIIET 161 ++R +AR + + + DL+ + + A A + D I + Sbjct: 268 ALERCDRIARWRNLGPAERAASLTDLHGVWAKADGELISTAKGWAPQVDGYGDAIARMHE 327 Query: 162 EEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAE--- 218 E L Y + ++ ++ + E A + Sbjct: 328 RC--GELLGIRVRAAYAVLLAKGLQAGRVYARSYAEAKQLAGAVDFNDLIANSAQLLSQP 385 Query: 219 -----AEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHP---------NGAIVLPGLDC 264 + + I++ + + R++ ++A + D Sbjct: 386 GIADWIRYKLDQRIDHILVDEAQDTNADQWRIVRSIAEEFFTAEWEPGQKVRTIFTVGDF 445 Query: 265 HIPTAIWNTITEKSTNITS---SNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMY 321 + + ++ + L + + + Sbjct: 446 KQAIFGFQGTSPQNFAAAQFLFERDARQAGHLFHDLSLERSFRSTPAVLDVVDRTIATLS 505 Query: 322 GRSMVISKSFLPPDTSDMRNTDIL--ENKIPNIQKCFSDVALIEADNEREEAISIAIALR 379 + + +++ ++L + I + + AD ER A +IA +R Sbjct: 506 AERFGLEAGEVRHVSANRFPGEVLLWKPVIAGLSEEAEGEEDWAADQERVLAQTIARQIR 565 Query: 380 MSLDE------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHS 427 +D+ L+ LAR + L + + + L+ L Sbjct: 566 QWIDDGLMLESRGRPVTAGDILILVRRRSELARLIVARLYEEKVAVAGIDRLRLNAPLAV 625 Query: 428 SILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMD 487 L + L + D + +A L+ PL + + Sbjct: 626 RDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDALMDRLIGRRV---------------G 670 Query: 488 LKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGN 547 L + + ++ + L+ + + Sbjct: 671 LWQHLTQTLDAALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLIERLGAEAADPIE 730 Query: 548 LSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWID 607 ++ ++ WF+ + + + + + + + Sbjct: 731 ELLNAALAFENDDYPSLQRFID------WFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQ 784 Query: 608 IITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRV 667 ++ + P D+L GL K + Sbjct: 785 APIVILADACLDPDA---------------GNRADSLEWNGLPIIAPRKAERQG-----A 824 Query: 668 MQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDF 727 + +A + + + V G Sbjct: 825 IGQVAEEASAVERAEHWRLLYVALTRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALIS 884 Query: 728 FDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYS---FSEIKQLINDPYA 784 D + + R + P + ++ P A Sbjct: 885 LDAEWEADPLWGARRRWRGHEILPPKAAETDIAENGAVHGEPGWLRKPAPVEARPPRPLA 944 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 A + + P D +RG H + L + D Sbjct: 945 PSATVEDDVPYPPPTPAMRDAAERGRWLHRLFERLADVPPGDR--------RARADKWLA 996 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADR 904 ++ L RH + + +E + P + + G DR Sbjct: 997 QQGLGDAAR---RHDVIEQALRVIEDPQYAALFGPDALAEAPIAAVVGEA--VIAGTVDR 1051 Query: 905 IDLLKSGFVDITDYKTGDNPKKETAQKLID--PQLSLEAAALK 945 + + V + D+KTG + + Q++ AAAL+ Sbjct: 1052 L-RIGDDLVQLIDFKTGRISPLAVEEVPLAHVRQMAAYAAALQ 1093 >gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca bermudensis HTCC2601] gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. HTCC2601] Length = 1125 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 80/856 (9%), Positives = 202/856 (23%), Gaps = 111/856 (12%) Query: 140 ISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERL 199 + L L D++ +E + L A+ E F + + Sbjct: 295 LRTGALEPLMNRLEDLMRRVEQARQTRLALGAVGREL------ALHRFAQAFLPAYETEK 348 Query: 200 VELNASSPVGYQIALMRAEAE--------HLMKGTKGPIIIAGSTGSIPATARLMSTVA- 250 I ++ + + G I++ + + P +++ +A Sbjct: 349 QRRGWLDFDDLVIRARDLLSDERVAEWVLYRLDGGIDHILVDEAQDTSPVQWQVIERLAH 408 Query: 251 --------NHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTH----------P 292 + D + + + Sbjct: 409 EFTSGEGARADVRRTIFVVGDKKQSIYSFQGADPREFDRMCDEFAERLQRTEAPLSRMML 468 Query: 293 QYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNI 352 +YS L + R + + KS +P + + ++ Sbjct: 469 EYSFRSAEPILRLVDNTFDRR-EAAGFSQDQKHRAFKSEMPGRVDLWPHVEPTKDDEEEA 527 Query: 353 QKCFSDVALIEADNEREEAISIAIALRMSL------------------DENKKKSALITA 394 + + + A IA + ++ L+ Sbjct: 528 DWYEPVDRIGQRHHAVILANRIAGFIDRTIGTPLPEEIGHSGSYKTRPAHAGDFLILVRG 587 Query: 395 DRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPL 454 L + + + I + + + + L + +LL + D +++AT ++ PL Sbjct: 588 RGTLFSEIIRACKQHNLPIAGADRLKVMSELAVKDIGALLAFLATPEDDLSLATALRSPL 647 Query: 455 AKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSE 514 + + + + D + VLD + ++ + R+ Sbjct: 648 FGLTQQQLFTLAQGRK--GYLWAELRRNRDAVPRVMSVLDDLRSETDFLRPYDLIERILT 705 Query: 515 EDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPN 574 LL + + + Sbjct: 706 RHDGRKRLLGRLGEEAEDGINALLAQALAYEQT------------------EVPSLTGFL 747 Query: 575 LWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTL 634 W + + + + + + ++ ++ + S L Sbjct: 748 EWLQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPDCAEPNSQIRDSLLE----- 802 Query: 635 ESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGT 694 T+ + + L + + Sbjct: 803 ----GETGTVWKASADRQPQVQA------------QALAEAKEADQRERDRLLYVALTRA 846 Query: 695 RHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHY 754 + + + A R+ + G + + Sbjct: 847 EKWLVVAAAGKLGSQGNAWYDQVRIGMERSGAEPTEFGFGGWGSGEGLTLGRADWSDLPH 906 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFI--PHFKKDPDRTDRGTLF 812 +R + P +E AV + + + RGT Sbjct: 907 ERVEETPRIEVDLPDVFRHPAAVPEAVAEAVSPSGLGGPKALGGEDGDDTEEAMLRGTAL 966 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H ++ L + H++ I++ E+ + + + + LE E Sbjct: 967 HLLLEHLSALPPAARPDAVPHVL-AIVEELPEETD-----------RLAEEAIAVLETPE 1014 Query: 873 KIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGD--NPKKETAQ 930 +P +IE +G + G DR+ + + + D+K+ Sbjct: 1015 LGPFFAPGSLAEVPISASIEPVG-RIHGIIDRLLVTPDKVIAV-DFKSNRTVPATPAEVP 1072 Query: 931 KLIDPQLSLEAAALKA 946 + + Q+ AAAL Sbjct: 1073 EGLLRQMGAYAAALAQ 1088 >gi|168701104|ref|ZP_02733381.1| UvrD/REP helicase [Gemmata obscuriglobus UQM 2246] Length = 1127 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 106/923 (11%), Positives = 224/923 (24%), Gaps = 113/923 (12%) Query: 2 HNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELR 61 P P + R ++ + L S+ + + ++L Sbjct: 209 AGDGPRQVRAGPGTGKTRTLV-GRVVHLLRARNVPAG-------SILALTYSNLSAKDLA 260 Query: 62 SEFIEITGKKST--ILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARLILIW 119 + G K+T + E + PP + R L L + Sbjct: 261 ARIRAAVGDKATAVWS---GTFHAFGLELLRKHGHVLGMEGPP-KLLDRTDSLMFLEQLL 316 Query: 120 RNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGM 179 + DLY P NAI AK+ + L + + Sbjct: 317 PQLPLNHYLDLYE--PARALKDILNAIGRAKDDLVTPERYGE--LAHAMLASASDPDAIT 372 Query: 180 WWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-----KGTKGPIIIAG 234 A + + + L + H + I++ Sbjct: 373 RAEKALE-VANVYSVYERELRSQWRVDFGDLVARPVELLRAHPEVRDAVRDQYRHILVDE 431 Query: 235 STGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQY 294 A+A + + G V+ D + + + + + Sbjct: 432 YQDMNRASAHFLKEIVTPKAGPWVV--GDVRQAIYRFRGASPLNMSRFEQDFPG------ 483 Query: 295 SLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQK 354 + L + G + ++ + L P++ + + Sbjct: 484 ---AAVTDLTVNYRSG---GKIVRAFEAFGQKMTAAPLAPNS----------GLTAHRGE 527 Query: 355 CFSDVALIEADNEREEAISIAIAL--RMSLDENKKKSALITADRNLARRVKLELTRFGIN 412 +V A + EA IA A+ R S + ++ R+ L R G+ Sbjct: 528 TNGNVLYDVAVSREAEAEGIAQAIKKRQSDGVPFRHQVVLARSHTTLARLAGHLERSGVP 587 Query: 413 IDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALE 472 L SLL+ + + + A + + Sbjct: 588 CLYFGD--FFERPEVRDLLSLLSVVSEKRGVGLLRVAQMPQYAVPPADIIKVVEWRREQA 645 Query: 473 LVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCIT 532 + L + + +I DL + I +T W E +H+ + Sbjct: 646 ISMLSALRRADEICDLTDVGRAGIKLLVFDTRHWSWTVSPHRFLTEYLFGSGEHVRLLLA 705 Query: 533 PLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKII 592 + L + + + Sbjct: 706 --------------------------------GNTVQDQQRRLAVYQLLQFAFAFKPPEK 733 Query: 593 ETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEG 652 E N + + I+ + + ++ S+ L F + L L + Sbjct: 734 EDPKHAFLNHVRRLTILDEEKQLRQLPAAAGDIDAVRLMTVHASKGLEFPVVHLVSLAKT 793 Query: 653 VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIA 712 ++P +P + ++ M+ L +RS + Sbjct: 794 IFPLGNRSDPCPPPAGMIAADDLLTATAEEESLFFVGMSRAKDVLHLSRSETNGAVKRGP 853 Query: 713 SRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSF 772 S +L +L K W +P S+ Sbjct: 854 SSFL--------EHVTAHLPKAVDAAAGWKNLGHQAKGRPRLAAAAVTGAW-------SY 898 Query: 773 SEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEIN 832 I+ P Y L L+ + H + L R E + Sbjct: 899 YAIETYDECPRRYYYDHALALNARDEEGPYL---QFQSALHASLAWL---RSVPQAAERS 952 Query: 833 HLMKQIIDSHFEKENLPPHIDI-IWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAI 891 ++ + + + H +R + K+ + L + + + + + Sbjct: 953 AGIRAQFELDWSEHGPQGHAFEPFYRGIADKMIANALAVMDGQ-------ALPVDRTVTL 1005 Query: 892 ESIGIHLTGFADRIDLLKSGFVD 914 G + AD I+ +G V Sbjct: 1006 PETGAVVNCRADHIEATSAGVVI 1028 >gi|256544666|ref|ZP_05472038.1| hypothetical protein HMPREF0078_0295 [Anaerococcus vaginalis ATCC 51170] gi|256399555|gb|EEU13160.1| hypothetical protein HMPREF0078_0295 [Anaerococcus vaginalis ATCC 51170] Length = 1119 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 42/240 (17%) Query: 768 RTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKN 827 +S SEI+ PY + L+ + D + G + H + + KK I+ + Sbjct: 766 NKFSVSEIETYAKCPYKYFINYGLRAKENKNLD--VDNLEIGNIVHYNMENISKKLIDMD 823 Query: 828 TPEINHL-MKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLE---HEEKI--------- 874 E++ ++ ++ F+K + + + + F+ +E Sbjct: 824 LKEVDDEKLENLVKESFQKAIE----NSLDLGRANDNKNKFILSNIYESTQKSSKKIINQ 879 Query: 875 --QSSIEKIFVNIPA-------KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPK 925 + + + V ++ ++ L G DRID + I DYKTG Sbjct: 880 IKEGNFKIDSVEEKYGKGGKYPEVYVDDKNY-LEGRIDRIDK-CDNLLRIIDYKTGS--- 934 Query: 926 KETAQ-----KLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKK 980 + + +D QL + A K + FY LK + K DK + Sbjct: 935 -KEIKIYNLLNGLDLQLFVYMLAAKEKKSENLFPV---ASFYFPLKDEVKKLEKNYDKDE 990 >gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 731 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 52/543 (9%), Positives = 127/543 (23%), Gaps = 86/543 (15%) Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEH-----LMKGTKGPIIIAGSTGSIPATA 243 + + + E + H + I++ + Sbjct: 171 RDIYQSYQEATDRAGLVDFSELLLRAYELWLNHTNILDHYQQRWSHILVDEFQDTNTVQY 230 Query: 244 RLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFL 303 + +A A V+ D W + + Sbjct: 231 AWIRALAE--KRAKVMIVGDDDQSIYGWRGAQVGNIQSFLKDFE---------------- 272 Query: 304 DIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE 363 G + + +T N + + QK ++L Sbjct: 273 ----------GAETVRLEQNYRSTPHILTAANTLIANNEGRMGKNLWTAQKEGEPISLYH 322 Query: 364 ADNEREEAISIAIALRMSLDENKK--KSALITADRNLARRVKLELTRFGINIDISAGIPL 421 A NE +EA +A ++ ++ + A++ +R ++ + I I G Sbjct: 323 AFNELDEARFVAHQIKKWHEKGGQLKDCAILYRSNAQSRVLEEAFLQGNIPHRIYGGHRF 382 Query: 422 STTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKN 481 + L I +D + ++ P Sbjct: 383 FERQEIKDALAYLRLISNRHDDASFERVINTP-----------------------ARGIG 419 Query: 482 SYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNK 541 + L+ DR T + + L+ ++ I + Sbjct: 420 ERTLSVLRQAARDREKTLWETIQILLHEKILAGRAASGLRRFIELIDSLAYETSEMPLHL 479 Query: 542 NSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKAN 601 + W + ++ NL + Sbjct: 480 QTDRVIKDSGLWL----MYQEEKGERAQGRIENLEELVNATQQYDYRQYEDD-------T 528 Query: 602 AIEWIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKN 661 ++ + ++ ++ ++ L F + + G+ E Sbjct: 529 LSPLQAFLSDAVLEAGEGQADASQDSVQMMTLHSAKGLEFFKIFIVGMEE---------G 579 Query: 662 PFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRE----NNIPTIASRWLQ 717 F S++ ++ E+ + M + L + + R + I SR++ Sbjct: 580 MFPSKMALNESGRLEEERRLAYVGLTRAM----KELTLSYAERRRLYGEEVRNIPSRFID 635 Query: 718 RLL 720 L Sbjct: 636 ELP 638 >gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1] gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1] Length = 1106 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 78/876 (8%), Positives = 189/876 (21%), Gaps = 113/876 (12%) Query: 111 ELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLH 170 LA L + + LA L ++ +E L Sbjct: 267 TLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRCCLL 326 Query: 171 ALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIAL--------MRAEAEHL 222 A + + F + + R + Sbjct: 327 AAERARLIH------AFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFR 380 Query: 223 MKGTKGPIIIAGSTGSIPATARLMSTVANHPNG--------AIVLPGLDCHIPTAIWNTI 274 + G I++ + + P +++ +A + D + Sbjct: 381 LDGGIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGA 440 Query: 275 TEKSTNITSSNTTYSTHPQYS-------LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVI 327 + + + L I R + G + Sbjct: 441 DVAAFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH 500 Query: 328 SKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIE-ADNEREEAISIAIALRMSLDE-- 384 + + P + F V L+ + A +A +R ++ Sbjct: 501 IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVATRIRAMIEAGV 560 Query: 385 ------------NKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTS 432 L+ ++ + + I + + L L L++ Sbjct: 561 QIPHPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLPIAGADRLKLGAELAVRDLSA 620 Query: 433 LLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLV 492 LL + D +++A +++ PL + E + E R + + Sbjct: 621 LLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGR--EGYLWRRLYDREAAHPGTVAI 678 Query: 493 LDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISD 552 L + Q + R LL + + + + Sbjct: 679 LRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLSQALAYERT----- 733 Query: 553 WTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRL 612 W + + + + + + ++ + Sbjct: 734 -------------DVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVI 780 Query: 613 IDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDL 672 + + E+ + G + + Sbjct: 781 LPDTADRKPRERDELFTLEGGARVW--------------------KTPAAESPPQIAAAR 820 Query: 673 NLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLK 732 + A + + + + + +++ + G + D+ Sbjct: 821 EARRARDAAENLRLLYVAMTRAQCWLIAAAAGKLETGGAWHDLIRQGMEAAGAERRDDGA 880 Query: 733 KRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILK 792 L + + P + E+ A Sbjct: 881 LVLDEGLWPPAAPQASAAAAAARPVLPGWAWAPATEPPAAPEVLSPSALGGAKAL----- 935 Query: 793 LDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHI 852 + G+ H ++ L L+ + D Sbjct: 936 ---PGDAMPTEEALAHGSAVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAP--------- 983 Query: 853 DIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGF 912 + + L E ++ + + + + L+G DR+ + Sbjct: 984 -------VLAEARAVLSAEHLAEALVPHALLEVAVTAEVAGR--RLSGTIDRLVVEPD-R 1033 Query: 913 VDITDYKTGDNPK--KETAQKLIDPQLSLEAAALKA 946 V DYKT E + I Q+ A AL Sbjct: 1034 VLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQ 1069 >gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155] gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223] gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155] gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223] Length = 722 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 75/690 (10%), Positives = 171/690 (24%), Gaps = 123/690 (17%) Query: 46 SVTIYVPTKRAIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSN 105 S+ T +A E+R ++ G + I + + + L Sbjct: 56 SILAVTFTNKAAAEMRERVEKVAGTNMGRM-WIGTFHGLAHRLLRTHFQDA-GLPQSFQI 113 Query: 106 IQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKK 165 + ++ RLI L K P + + + Sbjct: 114 LDSDDQV-RLIKRILKSLNLDEKQYPPRQAQGYINGKKD-----------------QGLR 155 Query: 166 WEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKG 225 + + + L + LKI + + E L+RA L K Sbjct: 156 PKHI-------DAGGFPLEQNLLKI-YQVYQESCDRAGLVDFAEI---LLRAHELWLNKP 204 Query: 226 --------TKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEK 277 I++ + + +A A V+ D W + Sbjct: 205 HLLAHYQDRFKHILVDEFQDTNAIQYAWIRVLAG--QTANVMIVGDDDQSIYGWRGAQVE 262 Query: 278 STNITSSNTTYSTHPQYSLAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + + + + + + Sbjct: 263 NLHRFLKDFP--------------------------TATTIRLEQNYRSKGNILKASNAL 296 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIALRMSLDENK--KKSALITAD 395 N + + ++ + ++L A NE +EA I + ++ A++ Sbjct: 297 IANNPERMGKELWTDEADGDPISLYCAFNEMDEARFIVGRINDWHEKGGNLSDCAILYRS 356 Query: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455 +R ++ L G+ I G+ L I +D A +V P Sbjct: 357 NAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKDDDAAFERVVNTPPR 416 Query: 456 KFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEE 515 G + R+ S + Sbjct: 417 GIGDRTLDILRSTARQH------------------------------ELTLWQASVRLLD 446 Query: 516 DKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNL 575 +K LA + + + ++T + + + + + + Sbjct: 447 EKVLAGRAANSVRGFMDLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARI 506 Query: 576 WFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE 635 EE T + F E + N ++ + + ++ Sbjct: 507 ENLEELVTAARTFEMPEELEDMGELNG-----FLSHAALEAGEGQADAFTDAVQLMTLHS 561 Query: 636 SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMANGTR 695 ++ L F + + G+ EG++P S + L+ ++ + + Sbjct: 562 AKGLEFTMVFMAGVEEGIFP--------------SKMALEEGDRLDEERRLCYVGMTRAM 607 Query: 696 H-LIYTRSLRE----NNIPTIASRWLQRLL 720 L T + SR+++ + Sbjct: 608 EKLYITYAESRRIYGREDYARPSRFIKEIP 637 >gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] Length = 1237 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 98/861 (11%), Positives = 225/861 (26%), Gaps = 120/861 (13%) Query: 184 AADFLKIASKYWTERLVELNASSPVGYQIALMRAEAE-----HLMKGTKGPIIIAGSTGS 238 F+K + + R E NA ++ E H + +++ + Sbjct: 376 LQRFMKAFVESYLNRKKEENAFEFADVSHFAIQILEEFPDVRHFYRNKYHEVMVDEYQDT 435 Query: 239 IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYS--- 295 R++ ++ NG D + + N Y Q Sbjct: 436 NHTQERMLELLS---NGHNRFMVGDIKQSIYRFRQADPQIFNDK--FKLYQDDSQQGKLI 490 Query: 296 -----LAKLLDFLDIKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIP 350 ++ L+ + KRL + + PD + E I Sbjct: 491 VLKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPDKKEPNPQYQTEFLIY 550 Query: 351 NIQKCF---SDVALIEADNEREEAISIAIALRMSLDE--NKKKSALITADRNLARRVKLE 405 + + + + + E A+ I +R+ +E + L+TA R + E Sbjct: 551 DGTLETNNEENDKDVSSVSAGEVALVIKEIIRLHNEENVQFEDITLLTASRTRNDMILAE 610 Query: 406 LTRFGINIDISAG-IPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYL 464 ++GI + G ++ ++ L I + A+ L+K P+ F E Sbjct: 611 FAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDE--- 667 Query: 465 SRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLV 524 + + +L + + ++ + + + + +L Sbjct: 668 --LARLALQKKVTEANHVVHQENLYEKLKNALSGHGQHPELITPPILKKIQQFQEILLDW 725 Query: 525 DHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTL 584 + + + L + Sbjct: 726 REFAKINSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRF 785 Query: 585 SSLFSKIIE---------------TGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLF 629 + KI+E + + + ++ + + SS+ Sbjct: 786 IGMIDKILETQNDLASVVVAAPKHAVRLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSAL 845 Query: 630 ILGTLESRLLNFDTLILGGLNEG--VWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHD 687 IL + + + + + + + + +++L + + + Sbjct: 846 ILSRQNGVGIKYVADVAVDVTDKLAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVA 905 Query: 688 FEMANGTRHLI-----------------------------------------------YT 700 A +L+ T Sbjct: 906 MTRAERKLYLVGKGRQESLEKKTFPAPENGRLAASIRRTMTSFQDWIWALQTVFKNDDLT 965 Query: 701 RSLRENNIPTIASRWLQRL-------LVLGGTDFFDNLKKRGQCYLDWTRKLD-YTTKQP 752 S R + S + +L + +R L+ +L+ Sbjct: 966 FSTRFVTDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAI 1025 Query: 753 HYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLF 812 H + ++ ++ +++ + + K G+ Sbjct: 1026 HLPSVRTPSQIKKFYEPVMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAV 1085 Query: 813 HNIITELIKKRINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEE 872 H ++ + ++ ++K+I+ +E + ID KI+ SF E E Sbjct: 1086 HELMQRIPLNQLP-----TIAILKEILAQVQAEETVKKKID------LQKIA-SFFETEL 1133 Query: 873 KIQ--SSIEKIFVNIPAKM----AIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKK 926 +K++ P M + G D LL + + DYKT Sbjct: 1134 GQLLLKQADKVYREAPFAMLKQDQASGQNFVVRGILDG-YLLLDDRIVLFDYKTDQYTNP 1192 Query: 927 ETAQKLIDPQLSLEAAALKAG 947 + QLSL A AL+ Sbjct: 1193 SELVERYQAQLSLYAEALRRS 1213 >gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] Length = 1114 Score = 92.7 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 97/930 (10%), Positives = 228/930 (24%), Gaps = 95/930 (10%) Query: 56 AIQELRSEFIEITGKKSTILPIIKSLGDVVEEKFTADLLLSYNLNPPVSNIQRLLELARL 115 A +R+E ++ LP + + D V + EL L Sbjct: 192 AAAAVRAELDAWQARRPDALPEGR-----DDAMQAFDRAEKLIAQTGVETPAQRAELLEL 246 Query: 116 ILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNE 175 ++ + P + +A A+ L D + L + Sbjct: 247 FAGVADEESADVTLKCWRGPHT------DAYDWARTLRDEHLPALVRDVVQPALRRWRAY 300 Query: 176 KYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHL-----MKGTKGPI 230 + F++ A + + + +H ++ + Sbjct: 301 VH----EEVVAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPGLRTTIQERHPRL 356 Query: 231 IIAGSTGSIPATARLMSTVANHPNGAI-----------VLPGLDCHIPTAIWNTITEKST 279 ++ + P A L+ + + + D + + Sbjct: 357 LVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYRFRRADMEVF 416 Query: 280 NITSSNTTYSTHPQYSLAKLLDFLDI--KREDVKRLGNVSNEMYGRSMVISKSFLPPDTS 337 + L K LD+ D + F P T+ Sbjct: 417 EAVGERIEDTGGEAVMLTKNFRSLDVICDWCDAAFGALFDDADLMDRQATYTPFDPQRTT 476 Query: 338 DMRNTDILENKIPNIQKCFSDVALIEADNEREEAISIAIA--------------LRMSLD 383 + + + ++ + I A + A I A + Sbjct: 477 ERDVDGVRRINLDKVRGNWG--TDIAAQDAGRIARFIQGARDGGRSGRGADRHGALFAGG 534 Query: 384 ENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDF 443 + ++T ++ L GI ++ L L LL + +D Sbjct: 535 ADYSDFLILTRTKSRLSVYAEALAERGIPYTVTGSEDLGEAAELKALVDLLTCALRPDDE 594 Query: 444 MAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNT 503 +A +K PL + Y + + L Q+ Sbjct: 595 VACVAYLKGPLVGASDDDLYRFSRAGGEF------GRMHEPVPASVLEALPHETAQRFEE 648 Query: 504 HVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQN 563 H ++ ++ + ++ ++ + L ++ G+L + Sbjct: 649 AFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPPDAAEGSLRAGRVLRTITYVQDL 708 Query: 564 VCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDI--ITRLIDGETVKPK 621 + + +ETG + + + Sbjct: 709 AAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVRVMNVHQAKGLEAPVVFLADPYS 768 Query: 622 IEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYI 681 ++ E+ L + G E V + +S + + Sbjct: 769 RSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLGWERPVDGRDESFRESEERHEAA 828 Query: 682 GQAAHDFEMANGTRHLIY--TRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + + A ++L+ T + ++ P Sbjct: 829 EERRLLYVAATRAQNLLVVSTYPEKPDDGPWAPLYPHLD--------------------A 868 Query: 740 DWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYA--RRILKLDFI