>gnl|CDD|163020 TIGR02786, addB_alphas, double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type. Length = 1021

Score = 870 bits (2250), Expect = 0.0 Identities = 383/1038 (36%), Positives = 568/1038 (54%), Gaps = 29/1038 (2%) Query: 8 VFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEI 67 VF+I P PF + LL G LV F D +PL LA TIYVPT+RA + LR F+++ Sbjct: 2 VFSIPPGRPFLDALAEGLLKGRLVAGFEADGDDPLALADATIYVPTRRAARALREAFVDV 61 Query: 68 TGKKSTILPIIKSLGDVVEEK--FTADLLLSYNLNPPVSNIQRLLELARLILIWRNKLPD 125 ++ +LP I+ LGDV E++ F A+ +L P +S ++RLLELARLI WR+KL + Sbjct: 62 LDGRAALLPRIRPLGDVDEDEALFAAEGPAILDLPPAISPLERLLELARLIRAWRDKLVE 121 Query: 126 IIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKYGMWWLLAA 185 + P PA+AIWLA++LAD++D +ETE W L L W + Sbjct: 122 ---------DVLAPAGPADAIWLARDLADLMDEMETEGVDWSKLDDLAEGDLARHWQVTL 172 Query: 186 DFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLM-KGTKGPIIIAGSTGSIPATAR 244 FL+I ++ W +RL EL S+P + L+RA A +GP+I AGSTGSIPATA Sbjct: 173 KFLEIVTRAWPKRLAELGRSNPAARRNRLLRALAARWATNPPEGPVIAAGSTGSIPATAD 232 Query: 245 LMSTVANHPNGAIVLPGLDCHIPTAIWNTITEKSTNITSSNTTYSTHPQYSLAKLLDFLD 304 L++ VA P GA+VLPGLD + W + T+ S HPQY L +LLD L Sbjct: 233 LLAVVARLPQGAVVLPGLDLDMDEEAWQALGPAGTDPPSV----FGHPQYGLKRLLDRLG 288 Query: 305 IKREDVKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILENKIPNIQKCFSDVALIEA 364 + R++V+ G + R ++S++ P +T+D + + I + F++++LIEA Sbjct: 289 VSRKEVREWGPADRGLRKRERLVSEALRPAETTDRWGSQREQPAEAGIAEAFANLSLIEA 348 Query: 365 DNEREEAISIAIALRMSLDENKKKSALITADRNLARRVKLELTRFGINIDISAGIPLSTT 424 NEREEA++IA+ALR ++++ K +AL+T DR LARRV EL RFGI+ D SAG PLS T Sbjct: 349 ANEREEALAIALALREAVEDPGKTAALVTPDRALARRVAAELKRFGIDADDSAGRPLSLT 408 Query: 425 LHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVALRGNKNSYD 484 + +L L A+F D +A+ +L+KHPL + G A LELVALRG Sbjct: 409 PPAVLLRLLAEAVFAPLDPVALLSLLKHPLVRLGEERDDWRAAAELLELVALRGGTPRAG 468 Query: 485 IMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVTYKTNKNST 544 I+ L + R+ ++ VP W S L E+ E A L + + I PL + + Sbjct: 469 ILALPAFFERRLLALGDDPEVPAWHSALPEQSIEAARPLCELLEIAIEPLESLAGRREEL 528 Query: 545 CGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKANAIE 604 ++ + TV ++ + DE L L+ E G L+SLF++++ + + +A + Sbjct: 529 -----DAELAEATVELMEALSRDEEGWLAALYEGEAGHKLASLFAELLSSAHGLDFDARD 583 Query: 605 WIDIITRLIDGETVKPKIEKSSTLFILGTLESRLLNFDTLILGGLNEGVWPKNTAKNPFL 664 W D++ L+ E V+P+ +FI G LE+RL D +++GGLNEGVWP +PFL Sbjct: 584 WPDVLQALMATEAVRPRDGGHPRIFIWGALEARLQTADLVVIGGLNEGVWPPAPRNDPFL 643 Query: 665 SRVMQSDLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIPTIASRWLQRLLVLGG 724 SR M+ +L L E+ IG +AHDF+ A G + ++ TR+ R P + SRWLQRL L G Sbjct: 644 SRPMRHELGLPPPERRIGLSAHDFQQALGAKEVVLTRAARSGGAPAVPSRWLQRLEALAG 703 Query: 725 TDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYA 784 D + +++RG+ YL W R LD RP P PP+ +PR +S +EI+ L DPYA Sbjct: 704 ADVLEEMRRRGERYLHWARALDEPQDVAPATRPAPRPPVADRPRHFSVTEIETLRRDPYA 763 Query: 785 VYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDSHFE 844 +YAR ILKL + +DP+ DRGTL H+I+ +++ + + +++I + F Sbjct: 764 IYARHILKLRPLDPLDRDPEAADRGTLIHDILERFVREYPDPLPADAADALRKIGRAEFA 823 Query: 845 KENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA-KMAIESIGIHLTGFAD 903 NLPP + +W F + + F + E + + +IF K + G L+G AD Sbjct: 824 SLNLPPTAEALWWPRFARAADWFADWERARRLDVRRIFAEARGRKELVGERGFTLSGRAD 883 Query: 904 RIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYI 963 RID G I DYKTG P + + + PQL+LEAA L G+F I ANL+Y+ Sbjct: 884 RIDRTPDGSAAILDYKTGAPPSGKQVRAGLSPQLALEAALLMRGAFKDIGAPTPANLYYV 943 Query: 964 RLK--QKFKIDCITNDKKKY-----SADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSE 1016 RL + I ++K K A +L+E++ + LI+++ + +Q + S Sbjct: 944 RLGGNGPVGEESILSEKGKGGKEPQDAPDLAEEAWERLIQLIRAYDDPDQGYTSRALPFG 1003 Query: 1017 KSNIQSEYDHLARVAEWR 1034 K +YDHLARV EW Sbjct: 1004 KKEYYGDYDHLARVDEWS 1021

RPSBLAST alignment for GI: 254780823 and conserved domain: TIGR02786