RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] (1040 letters) >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} (A:) Length = 265 Score = 98.2 bits (243), Expect = 5e-21 Identities = 33/256 (12%), Positives = 59/256 (23%), Gaps = 20/256 (7%) Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 S S++ + + P R+ +D D GT FH + EL Sbjct: 4 MENYHAGPGISKSQLDDIADTPALYLWRKNAPVD-----TTKTKTLDLGTAFHCRVLELE 58 Query: 821 KKRINKNTPE-INHLMKQIIDSHFEKE-----NLPPHIDIIWRHLFHKISHSFLEHEEKI 874 + N + I + S + Sbjct: 59 EFSNRFIVAPEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQ 118 Query: 875 QSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLI- 933 GI D+I F I D KT + ++ Sbjct: 119 WLVESAGHAESSIYWEDPETGILCRCRPDKII---PEFHWIMDVKTTADIQRFKTAYYDY 175 Query: 934 --DPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSL 991 Q + + +A Q L + + + + ++ Sbjct: 176 RYHVQDAFYSDGYEAQFGVQPT---FVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYH 232 Query: 992 KNLIEIVTLLQNGEQP 1007 +NL + L E P Sbjct: 233 RNLRTLSDCLNTDEWP 248 >3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} (A:) Length = 266 Score = 57.9 bits (139), Expect = 6e-09 Identities = 20/224 (8%), Positives = 44/224 (19%), Gaps = 40/224 (17%) Query: 764 EAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFK-KDPDRTDRGTLFHNIITELIKK 822 EA S S K ++ + G+ + + Sbjct: 13 EANKEYXSVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKSTALLVGSYVDSYFEGSLD- 71 Query: 823 RINKNTPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIF 882 K + +K L + + E + Sbjct: 72 ----------QFKKDNPEIFTQKGELKANFKQAEEII-----ARIERDEYFXKYXS--GQ 114 Query: 883 VNIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKET-----------AQK 931 + + G D V I D K + Sbjct: 115 KQVIXTGELF--GAKWKIKXDSYI----PGVAIVDLKVXASITDLKWVKDIGYLDFVRYW 168 Query: 932 LIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCIT 975 D Q ++ ++ + ++ + + + I I Sbjct: 169 GYDIQGAVYQEIVRQNTGEKLPFF----IAGATKQTEPDIRIIH 208 >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:444-587,B:727-885) Length = 303 Score = 40.3 bits (93), Expect = 0.001 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 19/174 (10%) Query: 607 DIITRLIDGETVKPKIEKSSTLFILGTLE-SRLLNFDTLILGGLNEGVWPKNTAKNPFLS 665 +I + + ++E L + T+ S+ L + + L + + + S Sbjct: 132 EIPSVYLSNRDSVMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHS 191 Query: 666 RVMQSDLNLKTAEKYIGQAAHDFE-----MANGTR-----HLIYTRSLRENNIPTIASRW 715 DLN + +A E TR L +R + Sbjct: 192 FEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDV 251 Query: 716 LQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRT 769 Q L + + L + + + QP Sbjct: 252 HQSAL----GRLLQKGEPQDAAGLRTCIE----ALCDDDIAWQTAQTGDNQPWQ 297 >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:278-376,A:544-673) Length = 229 Score = 32.4 bits (73), Expect = 0.28 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 12/101 (11%) Query: 340 RNTDILENKIPNIQKCFSDVALIEADNEREEAISIA---IALRMSLDENKKKSALITADR 396 N + E ++ + +++ ++ A+NE EA + IA K A++ Sbjct: 16 NNPHVFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGN 75 Query: 397 NLARRVKLELTRFGINIDISAGIPLS---------TTLHSS 428 + +R + L + I IS G S TLH+S Sbjct: 76 HQSRVFEKFLMQNRIPYKISGGTSESEEELDQVQLMTLHAS 116 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 30.6 bits (69), Expect = 0.89 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 25/101 (24%) Query: 565 CLDEHRKLPNLWFEEEGKTLSSLFSKIIETGSCIKA-NAIEWIDIITRLIDGETVKPKIE 623 L W E E + L I + + E++ TR I E + Sbjct: 32 QLVTREAQIKDWVENELEALK-------LEAEEIPSEDQNEFLLERTREIHNEAES---Q 81 Query: 624 KSSTLFILGTLESRLLNF---DTLIL---GGLNEGVWPKNT 658 + G +F D I G L + K++ Sbjct: 82 LRAAQQQWGN------DFYKRDPRIAPLRGAL--ATYSKDS 114 >2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:) Length = 236 Score = 29.9 bits (67), Expect = 1.6 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 839 IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHL 898 + F + + I I R LF +H + H +I + +N + H Sbjct: 157 VTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFR--------HF 208 Query: 899 TGFADRIDLL 908 FA +LL Sbjct: 209 CLFAQEFELL 218 >2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} (A:) Length = 242 Score = 29.8 bits (66), Expect = 1.6 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 9/109 (8%) Query: 118 IWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWEDLHALKNEKY 177 I+ + + +L P S I IDI E K E L A +++ Sbjct: 124 IFSAGIRKYMPELSPHRVESFY---NYMINGFHKPNFCIDISEYLSIKVEALEAYESQFS 180 Query: 178 GMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGT 226 + ++ + E ++ G ++ ++ AE K Sbjct: 181 TGSDGVKTPL----TEGYVETVIAREKM--FGKEVGVLYAEGFMSKKPV 223 >1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} (A:1-99,A:149-220) Length = 171 Score = 28.5 bits (64), Expect = 4.0 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 4/74 (5%) Query: 782 PYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIIDS 841 A+ + L I T G L N ++K I + +++I Sbjct: 36 VEALLESGVRDLTLI-ANDTAFVDTGIGPLIVN---GRVRKVIASHIGTNPETGRRMISG 91 Query: 842 HFEKENLPPHIDII 855 + +P + +I Sbjct: 92 EMDVVLVPADLALI 105 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:371-446,C:653-739,C:781-807) Length = 190 Score = 28.4 bits (63), Expect = 4.0 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 11/113 (9%) Query: 631 LGTLE-SRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFE 689 + TL R + F + L G+N+GV+P+ A F M + E Sbjct: 85 ICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDL--MSQKPKRGDRSRRDDDRYLFLE 142 Query: 690 MANGTRH---LIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYL 739 + + Y ++N + + +L Sbjct: 143 ALISAQQKLYISYIGRSIQDNTCLHTRMPFDPQNYQ-----PGERQSYAREWL 190 >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* (A:253-368) Length = 116 Score = 28.6 bits (64), Expect = 4.2 Identities = 7/68 (10%), Positives = 22/68 (32%), Gaps = 21/68 (30%) Query: 106 IQRLLELARLILIWRNKLPDII-------KDLYPESPLSLPISPANAIWLAKNLADIIDI 158 I+R + ++ ++ + L + A + + Sbjct: 61 IRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGED--------------LKRQQAQVEQV 106 Query: 159 IETEEKKW 166 ++TEE+++ Sbjct: 107 LKTEEEQF 114 >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} (A:238-355) Length = 118 Score = 28.6 bits (64), Expect = 4.2 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 21/68 (30%) Query: 106 IQRLLELARLILIWRNKLPDII-------KDLYPESPLSLPISPANAIWLAKNLADIIDI 158 ++R + + I L + K+ YPE L + + I Sbjct: 63 LRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPE--------------LELSREFVKGI 108 Query: 159 IETEEKKW 166 ++ EEK++ Sbjct: 109 VKGEEKRF 116 >1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:) Length = 185 Score = 28.3 bits (63), Expect = 4.6 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 22/93 (23%) Query: 831 INHLMKQI-------------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 I++LM + I F K N I + LF +H + +H + + Sbjct: 84 IDYLMTWVQDQLDDETLFPSKIGVPFPK-NFMSVAKTILKRLFRVYAHIYHQHFDSVMQL 142 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLLKS 910 E+ +N K H F +L+ Sbjct: 143 QEEAHLNTSFK--------HFIFFVQEFNLIDR 167 >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} (A:191-294) Length = 104 Score = 28.2 bits (63), Expect = 5.7 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Query: 806 TDRGTLFHNIITELIKKRINKNTP-EINHLMKQIIDSHFEKENLPPHIDI 854 TD + E+++++ T E+ + I+ + P + I Sbjct: 3 TDLPLRL--LAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVI 50 >1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus stearothermophilus} (A:1-141) Length = 141 Score = 27.7 bits (61), Expect = 6.5 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 6/46 (13%) Query: 35 RYDPLNPLLLASVTIYVPT------KRAIQELRSEFIEITGKKSTI 74 RY+ + V + A++EL+ + + + Sbjct: 11 RYERKDQYSRLRFEEIVAKRTSPIFQAAVEELQKGLRSMMEIEPQV 56 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} (A:1-232) Length = 232 Score = 27.9 bits (60), Expect = 7.2 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 3/60 (5%) Query: 215 MRAEAEHLMKGTKGPIIIAGSTGS--IPATARLMSTVANHPNGAIVLPGLDCHIPTAIWN 272 MR H II+A G+ +++ VA V + P Sbjct: 1 MRGSHHHHHHSNFA-IILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVT 59 >1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} (A:1-97,A:188-275) Length = 185 Score = 27.6 bits (61), Expect = 8.5 Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 17/145 (11%) Query: 26 LNGTLVENFRYDP------LNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILPIIK 79 L+GTL+++ YD L L A+V + + + + E+ + LP+I Sbjct: 16 LDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTL---GLQGLPLIA 72 Query: 80 SLGDVVEEKFTADLLLSYNLNP-----PVSNIQRLLELARLILIWRNKLP---DIIKDLY 131 G V++ + + ++ + + R D D Sbjct: 73 ENGAVIQLAEQWQEIDGFPRIISGIAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAP 132 Query: 132 PESPLSLPISPANAIWLAKNLADII 156 + + +L D Sbjct: 133 LLEVMDYAVIVKGLNREGVHLHDED 157 >1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} (A:) Length = 163 Score = 27.3 bits (60), Expect = 9.4 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 4/94 (4%) Query: 1 MHNKKPNVFTIAPSSPFFREMIPALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQEL 60 + V A ++P + A L+G L T++ PT A +L Sbjct: 23 QGMSQDPVAVAASNNPELTTLT-AALSGQLNPQVNLVDTLNS--GQYTVFAPTNAAFSKL 79 Query: 61 RSEFIEITGKKSTILPIIKSLGDVVEEKFTADLL 94 + I+ S++L I VV + + + Sbjct: 80 PASTIDELKTNSSLLTSI-LTYHVVAGQTSPANV 112 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 7,823,288 Number of extensions: 362944 Number of successful extensions: 1011 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1007 Number of HSP's successfully gapped: 32 Length of query: 1040 Length of database: 4,956,049 Length adjustment: 97 Effective length of query: 943 Effective length of database: 1,676,964 Effective search space: 1581377052 Effective search space used: 1581377052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (27.1 bits)