RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780823|ref|YP_003065236.1| double-strand break repair
protein AddB [Candidatus Liberibacter asiaticus str. psy62]
(1040 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 81.9 bits (202), Expect = 7e-16
Identities = 108/645 (16%), Positives = 180/645 (27%), Gaps = 264/645 (40%)
Query: 38 PLNPLLLA----SVTIYVPTKRAI--QELRSEFI--------EITGKKSTILPI---IKS 80
PL L+ + VPT +L+ +F P K
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 81 LG---DVVEEK---------------FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122
LG +VE F L ++I L A+L+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-------NDIHALA--AKLLQENDTT 115
Query: 123 LP---DIIKDLY-----PESPLSLPISPA--NAIWLAKNLADIIDI------IET--EEK 164
L ++IK+ + P + A A + + A ++ I + EE
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQLVAIFGGQGNTDDYFEE- 172
Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224
L+ + Y + +L D +K ++ E L EL + + +AE +
Sbjct: 173 -------LR-DLYQTYHVLVGDLIKFSA----ETLSEL-IRTTL---------DAEKVF- 209
Query: 225 GTKGPIIIA---GSTGSIPATARLMSTVANHPNGAIVLP--GLD--CHIPTAIWNTITEK 277
T+G I+ + + P L+S I P G+ H +T K
Sbjct: 210 -TQGLNILEWLENPS-NTPDKDYLLSI-------PISCPLIGVIQLAHY------VVTAK 254
Query: 278 STNITS-------SNTTYSTHPQ-----------------YSLAK----LLDFLDIKRED 309
T T H Q + + +L F
Sbjct: 255 LLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVL-F------- 304
Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN--------------KIPNIQKC 355
+G E Y + LPP + D LEN +Q
Sbjct: 305 --FIGVRCYEAYPNT------SLPPSILE----DSLENNEGVPSPMLSISNLTQEQVQD- 351
Query: 356 FSDVALIEADNE---REEAISIAI-----------------ALRMSLDENKKKSALITAD 395
+ N + + I++ L ++L + K S L D
Sbjct: 352 -----YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL---D 403
Query: 396 RNLARRV-----KLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI-AT 448
++ R+ KL+ RF +P+++ HS +L + I D + +
Sbjct: 404 QS---RIPFSERKLKFSNRF---------LPVASPFHSHLLVPASDLI--NKDLVKNNVS 449
Query: 449 LVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507
+ P Y + + LR S I + +V D I V
Sbjct: 450 FNAKDIQ---IP-VYDTFDGSD------LR--VLSGSI--SERIV-DCIIRL----PV-K 489
Query: 508 WQSRLSEEDKELAVLL-VDHIL-------QCITPLVTYKTNKNST 544
W E HIL + L NK+ T
Sbjct: 490 W---------ETTTQFKATHILDFGPGGASGLGVLT--HRNKDGT 523
Score = 60.7 bits (147), Expect = 2e-09
Identities = 98/594 (16%), Positives = 160/594 (26%), Gaps = 274/594 (46%)
Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKL------------NDFMAIATLVKHPLAKF-GFPE 461
+ + + T + S L F ++ A LV KF G+
Sbjct: 16 LEHVLLVPTASF--FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----GKFLGYVS 69
Query: 462 KYLSRAKNA-----LELVA-------LRGNKNSYDIMDL-KSLVLD-------------- 494
+ +K L L L GN DI L L+ +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DIHALAAKLLQENDTTLVKTKELIKN 125
Query: 495 ----RIATQKNNTHVPHWQSRL---SEEDK------------------ELAVL------L 523
RI ++ S L E EL L L
Sbjct: 126 YITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 524 VDHILQCITP----LVTYKTNKNSTCGN-LSISDW------------------------- 553
V +++ L+ + L+I +W
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 554 TKL---TVTCLQNVCLDEHRKLPNLWFEEEGKT---LSSLFSKIIETG-S--CIKANAI- 603
+L VT + L G T L S TG S + A AI
Sbjct: 244 IQLAHYVVTA---------KLL--------GFTPGELRSYLKGA--TGHSQGLVTAVAIA 284
Query: 604 ---EWIDIITRLIDGETVKPKIEKSSTLFILG----------TLESRLLNFDTLILGGLN 650
W +V+ I LF +G +L +L D+L
Sbjct: 285 ETDSWESFF------VSVRKAIT---VLFFIGVRCYEAYPNTSLPPSILE-DSLENN--- 331
Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AH-------DFEMANGTRHLIYT-- 700
EGV P +P LS + S+L + + Y+ + +H + + NG ++L+ +
Sbjct: 332 EGV-P-----SPMLS-I--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 701 -RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759
+SL N L++ G D Q ++ P +R K
Sbjct: 383 PQSLYGLN------LTLRKAKAPSGLD---------Q------------SRIPFSER-KL 414
Query: 760 -----FPPLEAQPRTYSF-SEIKQLINDPYAVYARRILKLDFIPH---FK-KD---PDRT 806
F P+ + P F S V A ++ D + + F KD P
Sbjct: 415 KFSNRFLPVAS-P----FHS--------HLLVPASDLINKDLVKNNVSFNAKDIQIP--- 458
Query: 807 DRGTLFH------------NIITELIK----KRIN----KNTPEINHLMKQIID 840
++ +I ++ + H I+D
Sbjct: 459 ----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK-ATH----ILD 503
Score = 51.9 bits (124), Expect = 7e-07
Identities = 91/565 (16%), Positives = 169/565 (29%), Gaps = 210/565 (37%)
Query: 533 PLV-TYKTNKNSTCGNLSIS------DWTKLTVTCLQNVCLDEHRK-LP----NLWFEEE 580
PL ++ G+L + + LQ ++ K LP ++E
Sbjct: 8 PLTLSH--------GSLEHVLLVPTASFFIASQ--LQ----EQFNKILPEPTEGFAADDE 53
Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE-TVKPKIEKSSTLFILGTLESRLL 639
T + L K + + + + + ++ L E+ L
Sbjct: 54 PTTPAELVGKFLGY-------------VSSLVEPSKVGQFDQVLNL----CLTEFENCYL 96
Query: 640 ---NFDTLI--LGGLNEGVWP--KNTAKNPFLSRVM---------QSDLNLKTAEK---- 679
+ L L N+ K KN +R+M S L + +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQ 155
Query: 680 -Y-I--GQ-AAHDF--EMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGGTDFFDN 730
I GQ D+ E+ + +Y L + I A L L+ T +
Sbjct: 156 LVAIFGGQGNTDDYFEELRD-----LYQTYHVLVGDLIKFSAET-LSELIRT--TLDAEK 207
Query: 731 LKKRGQCYLDWTRKLDYTTKQP--HYKRPKPFPPLEAQPRTYSFSEIK--QLINDPYAVY 786
+ +G L+W L+ + P Y L + P S I QL + Y V
Sbjct: 208 VFTQGLNILEW---LENPSNTPDKDY--------LLSIP--ISCPLIGVIQLAH--YVVT 252
Query: 787 ARRILKL---DFIPHFKKDPDRTDRGTLFHN--IIT--------------ELIKK----- 822
A+ +L + + K G H+ ++T ++K
Sbjct: 253 AK-LLGFTPGELRSYLK--------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 823 -----RINKNTPEINHLMKQII-DS---------------HFEKENLPPHIDIIWRHLFH 861
R + P + L I+ DS + +E + +++ HL
Sbjct: 304 FFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-- 360
Query: 862 KISHSFLEHEEKIQSSIEKI-----FVNI--PAKMAIESIGIHL------TG-------F 901
K Q I + V + P + ++ + + L +G F
Sbjct: 361 --------PAGK-QVEISLVNGAKNLV-VSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 902 ADRIDLLKSGFVDITD-YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI-------- 952
++R + F+ + + + A LI+ L + A QI
Sbjct: 410 SERKLKFSNRFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDG 465
Query: 953 -DCRKV-ANLFYIRLKQKFKIDCIT 975
D R + ++ R+ +DCI
Sbjct: 466 SDLRVLSGSISE-RI-----VDCII 484
Score = 51.1 bits (122), Expect = 1e-06
Identities = 79/557 (14%), Positives = 143/557 (25%), Gaps = 257/557 (46%)
Query: 613 IDGETVKPKIEKSSTLFIL--GTLESRLL-------NFDTL------ILGGLNEGVWPKN 657
+D + +P L G+LE LL L IL EG +
Sbjct: 1 MDAYSTRP--------LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 658 TAKNP------FLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709
P FL V + ++ + +FE L N+I
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----------NCYLEGNDIH 102
Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRG--QCYLDWTRKLDYT----TKQPHYKRPKPFPP- 762
+A++ L + +K + + Y T K+P K
Sbjct: 103 ALAAK-------LLQENDTTLVKTKELIKNY--------ITARIMAKRP---FDKKSNSA 144
Query: 763 -LEA----QPRTYS-----------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806
A + + F E++ L Y Y D
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL----YQTY----------HVLVGD---- 186
Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDII-WRHLFHKI 863
+I ++ L++ + F + ++I+ W
Sbjct: 187 --------LIKFS--------AETLSELIRTTLDAEKVFTQ-----GLNILEW------- 218
Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI----------HLTG-----FADRIDLL 908
LE+ + + ++IP + IG+ L G +
Sbjct: 219 ----LENPSN-TPDKDYL-LSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYL--- 267
Query: 909 KSGFVDITDYKTGDNPKKETAQKLI--------DPQLSLEAAALKAGSFSQIDCRKVANL 960
G TG +Q L+ D S + KA + L
Sbjct: 268 -KG-------ATGH------SQGLVTAVAIAETDSWESFFVSVRKA----------ITVL 303
Query: 961 FYI--RLKQKF-------KI--DCITNDKKKYS-----ADELSEKSLKNLIEIV--TL-- 1000
F+I R + + I D + N++ S ++ L+++ +++ + L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPA 362
Query: 1001 -------LQNGEQPFI------------SHLR--------------LSE-KSNIQ----- 1021
L NG + + LR SE K
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 1022 ------SEYDHLARVAE 1032
S L ++
Sbjct: 423 VASPFHSHL--LVPASD 437
Score = 41.1 bits (96), Expect = 0.001
Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 94/314 (29%)
Query: 724 GTDFFDNLKKRGQCYLD-WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782
G D + K Q D W R H+K TY FS + +IN+P
Sbjct: 1632 GMDLYKT-SKAAQ---DVWNRA------DNHFKD------------TYGFSILDIVINNP 1669
Query: 783 YAVYARRILKLDFIPHFKKDPDRTDR----GTLFHNII-----TELIKKRINKNTPEINH 833
++ HF + + R +F I+ TE I K IN+++
Sbjct: 1670 ----------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 834 LMKQ--IIDSHFEKENLPPHIDIIWRHLFHKISH--------SFLEH---EEKIQSSIEK 880
++ + + F + P + ++ + F + +F H E +S+
Sbjct: 1720 RSEKGLLSATQFTQ----PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 881 IFVNIPAKMAIESI-------GIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETA-- 929
+ M+IES+ G+ + R +L +S G + I NP + A
Sbjct: 1776 V-------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-------NPGRVAASF 1821
Query: 930 -QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN-----DKKKYSA 983
Q+ + Q +E + G +I V N Y+ +D +TN +K
Sbjct: 1822 SQEAL--QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 984 DELSEKSLKNLIEI 997
EL +KSL +L E+
Sbjct: 1880 IEL-QKSL-SLEEV 1891
Score = 30.7 bits (69), Expect = 1.7
Identities = 43/213 (20%), Positives = 66/213 (30%), Gaps = 94/213 (44%)
Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP----II 78
P++L + +EN P +P+L S++ T+ +Q+ ++ T LP +
Sbjct: 321 PSILEDS-LENNEGVP-SPML--SIS--NLTQEQVQD----YVNKTNS---HLPAGKQVE 367
Query: 79 KSL--GD---VVEEKFTADLLLS-YNLN--------PP---VSNI---QRLLELARLILI 118
SL G VV + S Y LN P S I +R L+
Sbjct: 368 ISLVNGAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF------ 416
Query: 119 WRNK-LP---------------DIIKDLYPE------SPLSLPI-----------SPANA 145
N+ LP I KDL + +P+ +
Sbjct: 417 -SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 146 IWLAKNLADIIDIIETEEKKWEDL------HAL 172
I+D I KWE H L
Sbjct: 476 S------ERIVDCIIRLPVKWETTTQFKATHIL 502
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A
{Escherichia coli k-12}
Length = 265
Score = 49.2 bits (116), Expect = 5e-06
Identities = 34/251 (13%), Positives = 63/251 (25%), Gaps = 14/251 (5%)
Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNT 828
S S++ + + P R+ +D D GT FH + EL +
Sbjct: 13 ISKSQLDDIADTPALYLWRKNAPVDT-----TKTKTLDLGTAFHCRVLELEEFSNRFIVA 67
Query: 829 PEINHLMKQIIDSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQSSIEKIFV 883
PE N + + S +
Sbjct: 68 PEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHA 127
Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943
GI D+I +D+ K Q + +
Sbjct: 128 ESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDG 187
Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003
+A Q + ++ ++ ++ A + ++ +NL + L
Sbjct: 188 YEAQFGVQPTFVFLVAS-TTIECGRYPVEIFMMGEEAKLAGQ--QEYHRNLRTLSDCLNT 244
Query: 1004 GEQPFISHLRL 1014
E P I L L
Sbjct: 245 DEWPAIKTLSL 255
>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A
{Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A*
Length = 680
Score = 43.0 bits (100), Expect = 4e-04
Identities = 39/306 (12%), Positives = 90/306 (29%), Gaps = 39/306 (12%)
Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDIS 416
++L A NE +EA + ++ D + A++ +R ++ L + + I
Sbjct: 318 ISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIY 377
Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476
G+ S L I ND A +V P G ++ L
Sbjct: 378 GGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTP--TRGIGDRTLDV---------- 425
Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536
+ + + + T + L E+ L + +
Sbjct: 426 ----------------VRQTSRDRQLTLWQACRELLQEKA------LAGRAASALQRFME 463
Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596
++ + T + + + + + L L + +
Sbjct: 464 LIDALAQETADMPLHVQTDRVIKDSG--LRTMYEQEKGEKGQTRIENLEELVTATRQFSY 521
Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE-SRLLNFDTLILGGLNEGVWP 655
+ + + E + + + L TL ++ L F + + G+ EG++P
Sbjct: 522 NEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581
Query: 656 KNTAKN 661
+ +
Sbjct: 582 SQMSLD 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.054
Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
Query: 869 EHE--EKIQSSIEKIFVN--IPAKMAIES 893
E + +K+Q+S+ K++ + PA +AI++
Sbjct: 18 EKQALKKLQASL-KLYADDSAPA-LAIKA 44
Score = 31.1 bits (69), Expect = 1.4
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 925 KKETAQKLIDPQLSLE--------AAALKA 946
+K+ +KL Q SL+ A A+KA
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKA 44
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 35.6 bits (81), Expect = 0.068
Identities = 20/186 (10%), Positives = 53/186 (28%), Gaps = 16/186 (8%)
Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPF 760
+ I I + + R +V G + ++ + P+
Sbjct: 24 FADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK 83
Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820
L A E + I + Y ++ L K +R + +
Sbjct: 84 NWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRT 143
Query: 821 KKRINKNTPEINHLMKQ-------------IIDSHFEKENLPPHIDIIWRHLFHKISHSF 867
+R + + ++ +ID++ + + + + H +++ F
Sbjct: 144 MQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYL-QLASQF 202
Query: 868 LEHEEK 873
+ E+
Sbjct: 203 VSQEKP 208
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 34.0 bits (77), Expect = 0.17
Identities = 99/451 (21%), Positives = 163/451 (36%), Gaps = 127/451 (28%)
Query: 489 KSLVLDRIATQKNNTHVPH-WQSR--------LSEEDKELAVLLVD----HILQCIT-PL 534
K+L DR+ + +P W ++ +S+ D +LV I IT P
Sbjct: 978 KALRFDRLVAGQ----IPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPY 1033
Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP---NLWFEEEGKTLSSLFSKI 591
YK S GN S S V+ L+ + D + P ++ E T+S+ + +
Sbjct: 1034 EMYKYVHVSEVGNCSGSGMGG--VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNML 1091
Query: 592 -------IET--GSCIKANAIEWIDI-ITRLIDGETVKPKI----------EKSSTLFIL 631
I+T G+C A ++E +DI + ++ G K +I E+ S F
Sbjct: 1092 LISSSGPIKTPVGAC--ATSVESVDIGVETILSG---KARICIVGGYDDFQEEGS--FEF 1144
Query: 632 GTLESRLLNFDTLILGGL-NEGVWPKNTAKNPFLSR-------VMQSDLNLK-------- 675
G +++ + G E P T +N F+ +MQ+DL LK
Sbjct: 1145 GNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1204
Query: 676 -----TAEKYIGQAAHDFEMANGTRHLIYTR----SLRENNIPTIASRWLQRLLVLGGTD 726
TA IG++ A G L R S++ + P + ++ +R LV
Sbjct: 1205 VAMAATATDKIGRSVP----APGKGILTTAREHHSSVKYAS-PNLNMKYRKRQLV----- 1254
Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786
+ Q DW + K P E Q + +++ N+ +
Sbjct: 1255 -----TREAQIK-DWVE-----NELEALKLEAEEIPSEDQ-NEFLLERTREIHNEAESQL 1302
Query: 787 --ARRILKLDFIPHFKKDPDRTD-RGTL--------------FHNIITELIKKRINKN-T 828
A++ DF +K+DP RG L FH T K +KN +
Sbjct: 1303 RAAQQQWGNDF---YKRDPRIAPLRGALATYGLTIDDLGVASFHGTST----KANDKNES 1355
Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859
IN +MK H + P I + + L
Sbjct: 1356 ATINEMMK-----HLGRSEGNPVIGVFQKFL 1381
>3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale}
Length = 266
Score = 32.7 bits (74), Expect = 0.42
Identities = 18/160 (11%), Positives = 33/160 (20%), Gaps = 29/160 (18%)
Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIK--KRINKN 827
S S K + ++ + G+ + + K+ N
Sbjct: 20 SVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPE 79
Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887
+K + I I R + +K ++F
Sbjct: 80 IFTQKGELKA------NFKQAEEIIARIERDEYFM----KYMSGQKQVIMTGELF----- 124
Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927
G D V I D K +
Sbjct: 125 -------GAKWKIKMDSYI----PGVAIVDLKVMASITDL 153
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid
decarboxylase, X-RAY diffraction, structural genomics,
NPPSFA; 2.15A {Aquifex aeolicus}
Length = 189
Score = 31.9 bits (72), Expect = 0.79
Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 38/166 (22%)
Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA------ 213
E E L LKN + + + + + S+ IA
Sbjct: 46 EHSLTFEEVLKGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKN 105
Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273
L+ E +K +++ M + G +V+P
Sbjct: 106 LIHRVGEVALKERVPLVLLVREAPYNEIHLENMLKITRM--GGVVVP------------- 150
Query: 274 ITEKSTNITSSNTTYSTHPQ-------YSLAKLLDFLDIKREDVKR 312
++ + PQ + + KLLD L I+ KR
Sbjct: 151 ----------ASPAFYHKPQSIDDMINFVVGKLLDVLRIEHNLYKR 186
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose
isomerization, hydride shift; 1.60A {Escherichia coli}
SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Length = 426
Score = 31.7 bits (72), Expect = 0.90
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLP 849
L LDF P P D TL H I + I+H + ++F ++
Sbjct: 134 LGLDFNPSCFSHPLSADGFTLSH------ADDSIRQFW--IDHCKASRRVSAYFGEQLGT 185
Query: 850 PHIDIIWRHLFHK-ISHSFLEHEEKIQSSIEKIFVNIPAKM----AIES 893
P + IW K I+ L +++ ++++++ A+ES
Sbjct: 186 PSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVES 234
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, PSI, MCSG; 2.00A
{Saccharomyces cerevisiae}
Length = 254
Score = 31.1 bits (71), Expect = 1.2
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 37/165 (22%)
Query: 141 SPANAIWLAKNLADIIDIIE---TEEKKWEDLHALKNEKYGMWWLL---------AADFL 188
S A L + D + TE+ + L + +G L +
Sbjct: 37 SEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVN 96
Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP-------- 240
+I W ++L ++N S V +L+ L K + ++ ++
Sbjct: 97 EIDVNAW-KKLYDINFFSIV----SLVGIALPELKKTNGNVVFVSSDACNMYFSSWGAYG 151
Query: 241 ----ATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNTITEK 277
A T+AN + V PG+ + T + I E
Sbjct: 152 SSKAALNHFAMTLANEERQ-VKAIAVAPGI---VDTDMQVNIREN 192
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 31.0 bits (70), Expect = 1.5
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 831 INHLMKQI-------------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877
+ LM+ + F + + I I R LF +H + H +I
Sbjct: 136 VECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILEL 195
Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
+ +N + H FA +LL
Sbjct: 196 NLQTVLNTSFR--------HFCLFAQEFELL 218
>1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme,
oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP:
c.2.1.2
Length = 256
Score = 30.3 bits (68), Expect = 2.1
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447
K+A+I+ ++ L R GIN++ A + + +
Sbjct: 156 KAAVISLTQSAGL----NLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQ 211
Query: 448 TLVKHPLAKFGFPE 461
P + G E
Sbjct: 212 VGAAVPFGRMGRAE 225
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold,
zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus
cereus}
Length = 242
Score = 30.3 bits (67), Expect = 2.4
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 6/123 (4%)
Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156
P + ++ I K + SP + I I
Sbjct: 100 LVFAPYYEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMINGFHKPNFCI 159
Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216
DI E K E L A +++ ++ + E ++ G ++ ++
Sbjct: 160 DISEYLSIKVEALEAYESQFSTGSD----GVKTPLTEGYVETVIAREKM--FGKEVGVLY 213
Query: 217 AEA 219
AE
Sbjct: 214 AEG 216
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 30.1 bits (67), Expect = 2.6
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 14/151 (9%)
Query: 113 ARLILIWRN-----KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167
A + + ++ KLP I + A + + + +
Sbjct: 31 ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK-CDIREEDQVRAAVAATVDTFG 89
Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227
+ L N +W L K + + + ++NA +A HL++
Sbjct: 90 GIDILVNNASAIWL---RGTLDTPMKRF-DLMQQVNARGS----FVCAQACLPHLLQAPN 141
Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIV 258
I+ S+ T +
Sbjct: 142 PHILTLAPPPSLNPAWWGAHTGYTLAKMGMS 172
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Length = 185
Score = 30.2 bits (68), Expect = 2.7
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 820 IKKRINKNTPE-INHLMKQIID-----SHFEKE-------NLPPHIDIIWRHLFHKISHS 866
IKK I + P+ I++LM + D + F + N I + LF +H
Sbjct: 72 IKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHI 131
Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908
+ +H + + E+ +N K H F +L+
Sbjct: 132 YHQHFDSVMQLQEEAHLNTSFK--------HFIFFVQEFNLI 165
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase),
structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 28.9 bits (64), Expect = 6.4
Identities = 14/186 (7%), Positives = 40/186 (21%), Gaps = 24/186 (12%)
Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKR---GQCYLDWTRKLDYTTKQPH-----Y 754
L+ I S L G + + + + D T +
Sbjct: 95 LKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQM 154
Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814
K ++ V + ++ +
Sbjct: 155 KILTDIVWPVIAKLAREEMDVAVAKGKTLCVI---DAAMLLEAGWQSMVHEVWTVVIPET 211
Query: 815 IITELIKKRINKNTPEINHLMKQ-------------IIDSHFEKENLPPHIDIIWRHLFH 861
I +R + ++ ++ + +E ++ W L
Sbjct: 212 EAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQK 271
Query: 862 KISHSF 867
++ ++
Sbjct: 272 RLPKAY 277
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 28.7 bits (65), Expect = 6.9
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244
D L+ W +++ +N RA ++ G I+ GS
Sbjct: 99 HDALETDDATW-RQVMAVNVDGMF----WASRAFGRAMVARGAGAIVNLGSMSGTIVNRP 153
Query: 245 LMSTVANHPNGAIV 258
++ GA+
Sbjct: 154 QFASSYMASKGAVH 167
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 9,014,476
Number of extensions: 433220
Number of successful extensions: 1390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 37
Length of query: 1040
Length of database: 5,693,230
Length adjustment: 102
Effective length of query: 938
Effective length of database: 3,220,342
Effective search space: 3020680796
Effective search space used: 3020680796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)