RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] (1040 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 81.9 bits (202), Expect = 7e-16 Identities = 108/645 (16%), Positives = 180/645 (27%), Gaps = 264/645 (40%) Query: 38 PLNPLLLA----SVTIYVPTKRAI--QELRSEFI--------EITGKKSTILPI---IKS 80 PL L+ + VPT +L+ +F P K Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64 Query: 81 LG---DVVEEK---------------FTADLLLSYNLNPPVSNIQRLLELARLILIWRNK 122 LG +VE F L ++I L A+L+ Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-------NDIHALA--AKLLQENDTT 115 Query: 123 LP---DIIKDLY-----PESPLSLPISPA--NAIWLAKNLADIIDI------IET--EEK 164 L ++IK+ + P + A A + + A ++ I + EE Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQLVAIFGGQGNTDDYFEE- 172 Query: 165 KWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMK 224 L+ + Y + +L D +K ++ E L EL + + +AE + Sbjct: 173 -------LR-DLYQTYHVLVGDLIKFSA----ETLSEL-IRTTL---------DAEKVF- 209 Query: 225 GTKGPIIIA---GSTGSIPATARLMSTVANHPNGAIVLP--GLD--CHIPTAIWNTITEK 277 T+G I+ + + P L+S I P G+ H +T K Sbjct: 210 -TQGLNILEWLENPS-NTPDKDYLLSI-------PISCPLIGVIQLAHY------VVTAK 254 Query: 278 STNITS-------SNTTYSTHPQ-----------------YSLAK----LLDFLDIKRED 309 T T H Q + + +L F Sbjct: 255 LLGFTPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVSVRKAITVL-F------- 304 Query: 310 VKRLGNVSNEMYGRSMVISKSFLPPDTSDMRNTDILEN--------------KIPNIQKC 355 +G E Y + LPP + D LEN +Q Sbjct: 305 --FIGVRCYEAYPNT------SLPPSILE----DSLENNEGVPSPMLSISNLTQEQVQD- 351 Query: 356 FSDVALIEADNE---REEAISIAI-----------------ALRMSLDENKKKSALITAD 395 + N + + I++ L ++L + K S L D Sbjct: 352 -----YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL---D 403 Query: 396 RNLARRV-----KLEL-TRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAI-AT 448 ++ R+ KL+ RF +P+++ HS +L + I D + + Sbjct: 404 QS---RIPFSERKLKFSNRF---------LPVASPFHSHLLVPASDLI--NKDLVKNNVS 449 Query: 449 LVKHPLAKFGFPEKYLSR-AKNALELVALRGNKNSYDIMDLKSLVLDRIATQKNNTHVPH 507 + P Y + + LR S I + +V D I V Sbjct: 450 FNAKDIQ---IP-VYDTFDGSD------LR--VLSGSI--SERIV-DCIIRL----PV-K 489 Query: 508 WQSRLSEEDKELAVLL-VDHIL-------QCITPLVTYKTNKNST 544 W E HIL + L NK+ T Sbjct: 490 W---------ETTTQFKATHILDFGPGGASGLGVLT--HRNKDGT 523 Score = 60.7 bits (147), Expect = 2e-09 Identities = 98/594 (16%), Positives = 160/594 (26%), Gaps = 274/594 (46%) Query: 415 ISAGIPLSTTLHSSILTSLLNAIFKL------------NDFMAIATLVKHPLAKF-GFPE 461 + + + T + S L F ++ A LV KF G+ Sbjct: 16 LEHVLLVPTASF--FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----GKFLGYVS 69 Query: 462 KYLSRAKNA-----LELVA-------LRGNKNSYDIMDL-KSLVLD-------------- 494 + +K L L L GN DI L L+ + Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGN----DIHALAAKLLQENDTTLVKTKELIKN 125 Query: 495 ----RIATQKNNTHVPHWQSRL---SEEDK------------------ELAVL------L 523 RI ++ S L E EL L L Sbjct: 126 YITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183 Query: 524 VDHILQCITP----LVTYKTNKNSTCGN-LSISDW------------------------- 553 V +++ L+ + L+I +W Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243 Query: 554 TKL---TVTCLQNVCLDEHRKLPNLWFEEEGKT---LSSLFSKIIETG-S--CIKANAI- 603 +L VT + L G T L S TG S + A AI Sbjct: 244 IQLAHYVVTA---------KLL--------GFTPGELRSYLKGA--TGHSQGLVTAVAIA 284 Query: 604 ---EWIDIITRLIDGETVKPKIEKSSTLFILG----------TLESRLLNFDTLILGGLN 650 W +V+ I LF +G +L +L D+L Sbjct: 285 ETDSWESFF------VSVRKAIT---VLFFIGVRCYEAYPNTSLPPSILE-DSLENN--- 331 Query: 651 EGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQA-AH-------DFEMANGTRHLIYT-- 700 EGV P +P LS + S+L + + Y+ + +H + + NG ++L+ + Sbjct: 332 EGV-P-----SPMLS-I--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382 Query: 701 -RSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKP 759 +SL N L++ G D Q ++ P +R K Sbjct: 383 PQSLYGLN------LTLRKAKAPSGLD---------Q------------SRIPFSER-KL 414 Query: 760 -----FPPLEAQPRTYSF-SEIKQLINDPYAVYARRILKLDFIPH---FK-KD---PDRT 806 F P+ + P F S V A ++ D + + F KD P Sbjct: 415 KFSNRFLPVAS-P----FHS--------HLLVPASDLINKDLVKNNVSFNAKDIQIP--- 458 Query: 807 DRGTLFH------------NIITELIK----KRIN----KNTPEINHLMKQIID 840 ++ +I ++ + H I+D Sbjct: 459 ----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK-ATH----ILD 503 Score = 51.9 bits (124), Expect = 7e-07 Identities = 91/565 (16%), Positives = 169/565 (29%), Gaps = 210/565 (37%) Query: 533 PLV-TYKTNKNSTCGNLSIS------DWTKLTVTCLQNVCLDEHRK-LP----NLWFEEE 580 PL ++ G+L + + LQ ++ K LP ++E Sbjct: 8 PLTLSH--------GSLEHVLLVPTASFFIASQ--LQ----EQFNKILPEPTEGFAADDE 53 Query: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGE-TVKPKIEKSSTLFILGTLESRLL 639 T + L K + + + + + ++ L E+ L Sbjct: 54 PTTPAELVGKFLGY-------------VSSLVEPSKVGQFDQVLNL----CLTEFENCYL 96 Query: 640 ---NFDTLI--LGGLNEGVWP--KNTAKNPFLSRVM---------QSDLNLKTAEK---- 679 + L L N+ K KN +R+M S L + + Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQ 155 Query: 680 -Y-I--GQ-AAHDF--EMANGTRHLIYT--RSLRENNIPTIASRWLQRLLVLGGTDFFDN 730 I GQ D+ E+ + +Y L + I A L L+ T + Sbjct: 156 LVAIFGGQGNTDDYFEELRD-----LYQTYHVLVGDLIKFSAET-LSELIRT--TLDAEK 207 Query: 731 LKKRGQCYLDWTRKLDYTTKQP--HYKRPKPFPPLEAQPRTYSFSEIK--QLINDPYAVY 786 + +G L+W L+ + P Y L + P S I QL + Y V Sbjct: 208 VFTQGLNILEW---LENPSNTPDKDY--------LLSIP--ISCPLIGVIQLAH--YVVT 252 Query: 787 ARRILKL---DFIPHFKKDPDRTDRGTLFHN--IIT--------------ELIKK----- 822 A+ +L + + K G H+ ++T ++K Sbjct: 253 AK-LLGFTPGELRSYLK--------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303 Query: 823 -----RINKNTPEINHLMKQII-DS---------------HFEKENLPPHIDIIWRHLFH 861 R + P + L I+ DS + +E + +++ HL Sbjct: 304 FFIGVRCYEAYPNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-- 360 Query: 862 KISHSFLEHEEKIQSSIEKI-----FVNI--PAKMAIESIGIHL------TG-------F 901 K Q I + V + P + ++ + + L +G F Sbjct: 361 --------PAGK-QVEISLVNGAKNLV-VSGPPQ-SLYGLNLTLRKAKAPSGLDQSRIPF 409 Query: 902 ADRIDLLKSGFVDITD-YKTGDNPKKETAQKLIDPQLSLEAAALKAGSFSQI-------- 952 ++R + F+ + + + A LI+ L + A QI Sbjct: 410 SERKLKFSNRFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDG 465 Query: 953 -DCRKV-ANLFYIRLKQKFKIDCIT 975 D R + ++ R+ +DCI Sbjct: 466 SDLRVLSGSISE-RI-----VDCII 484 Score = 51.1 bits (122), Expect = 1e-06 Identities = 79/557 (14%), Positives = 143/557 (25%), Gaps = 257/557 (46%) Query: 613 IDGETVKPKIEKSSTLFIL--GTLESRLL-------NFDTL------ILGGLNEGVWPKN 657 +D + +P L G+LE LL L IL EG + Sbjct: 1 MDAYSTRP--------LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52 Query: 658 TAKNP------FLSRVMQS--DLNLKTAEKYIGQAAHDFEMANGTRHLIYTRSLRENNIP 709 P FL V + ++ + +FE L N+I Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----------NCYLEGNDIH 102 Query: 710 TIASRWLQRLLVLGGTDFFDNLKKRG--QCYLDWTRKLDYT----TKQPHYKRPKPFPP- 762 +A++ L + +K + + Y T K+P K Sbjct: 103 ALAAK-------LLQENDTTLVKTKELIKNY--------ITARIMAKRP---FDKKSNSA 144 Query: 763 -LEA----QPRTYS-----------FSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRT 806 A + + F E++ L Y Y D Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL----YQTY----------HVLVGD---- 186 Query: 807 DRGTLFHNIITELIKKRINKNTPEINHLMK--QIIDSHFEKENLPPHIDII-WRHLFHKI 863 +I ++ L++ + F + ++I+ W Sbjct: 187 --------LIKFS--------AETLSELIRTTLDAEKVFTQ-----GLNILEW------- 218 Query: 864 SHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGI----------HLTG-----FADRIDLL 908 LE+ + + ++IP + IG+ L G + Sbjct: 219 ----LENPSN-TPDKDYL-LSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYL--- 267 Query: 909 KSGFVDITDYKTGDNPKKETAQKLI--------DPQLSLEAAALKAGSFSQIDCRKVANL 960 G TG +Q L+ D S + KA + L Sbjct: 268 -KG-------ATGH------SQGLVTAVAIAETDSWESFFVSVRKA----------ITVL 303 Query: 961 FYI--RLKQKF-------KI--DCITNDKKKYS-----ADELSEKSLKNLIEIV--TL-- 1000 F+I R + + I D + N++ S ++ L+++ +++ + L Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPA 362 Query: 1001 -------LQNGEQPFI------------SHLR--------------LSE-KSNIQ----- 1021 L NG + + LR SE K Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422 Query: 1022 ------SEYDHLARVAE 1032 S L ++ Sbjct: 423 VASPFHSHL--LVPASD 437 Score = 41.1 bits (96), Expect = 0.001 Identities = 66/314 (21%), Positives = 114/314 (36%), Gaps = 94/314 (29%) Query: 724 GTDFFDNLKKRGQCYLD-WTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDP 782 G D + K Q D W R H+K TY FS + +IN+P Sbjct: 1632 GMDLYKT-SKAAQ---DVWNRA------DNHFKD------------TYGFSILDIVINNP 1669 Query: 783 YAVYARRILKLDFIPHFKKDPDRTDR----GTLFHNII-----TELIKKRINKNTPEINH 833 ++ HF + + R +F I+ TE I K IN+++ Sbjct: 1670 ----------VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719 Query: 834 LMKQ--IIDSHFEKENLPPHIDIIWRHLFHKISH--------SFLEH---EEKIQSSIEK 880 ++ + + F + P + ++ + F + +F H E +S+ Sbjct: 1720 RSEKGLLSATQFTQ----PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775 Query: 881 IFVNIPAKMAIESI-------GIHLTGFADRIDLLKS--GFVDITDYKTGDNPKKETA-- 929 + M+IES+ G+ + R +L +S G + I NP + A Sbjct: 1776 V-------MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-------NPGRVAASF 1821 Query: 930 -QKLIDPQLSLEAAALKAGSFSQIDCRKVANLFYIRLKQKFKIDCITN-----DKKKYSA 983 Q+ + Q +E + G +I V N Y+ +D +TN +K Sbjct: 1822 SQEAL--QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879 Query: 984 DELSEKSLKNLIEI 997 EL +KSL +L E+ Sbjct: 1880 IEL-QKSL-SLEEV 1891 Score = 30.7 bits (69), Expect = 1.7 Identities = 43/213 (20%), Positives = 66/213 (30%), Gaps = 94/213 (44%) Query: 23 PALLNGTLVENFRYDPLNPLLLASVTIYVPTKRAIQELRSEFIEITGKKSTILP----II 78 P++L + +EN P +P+L S++ T+ +Q+ ++ T LP + Sbjct: 321 PSILEDS-LENNEGVP-SPML--SIS--NLTQEQVQD----YVNKTNS---HLPAGKQVE 367 Query: 79 KSL--GD---VVEEKFTADLLLS-YNLN--------PP---VSNI---QRLLELARLILI 118 SL G VV + S Y LN P S I +R L+ Sbjct: 368 ISLVNGAKNLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF------ 416 Query: 119 WRNK-LP---------------DIIKDLYPE------SPLSLPI-----------SPANA 145 N+ LP I KDL + +P+ + Sbjct: 417 -SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475 Query: 146 IWLAKNLADIIDIIETEEKKWEDL------HAL 172 I+D I KWE H L Sbjct: 476 S------ERIVDCIIRLPVKWETTTQFKATHIL 502 >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} Length = 265 Score = 49.2 bits (116), Expect = 5e-06 Identities = 34/251 (13%), Positives = 63/251 (25%), Gaps = 14/251 (5%) Query: 770 YSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELIK-KRINKNT 828 S S++ + + P R+ +D D GT FH + EL + Sbjct: 13 ISKSQLDDIADTPALYLWRKNAPVDT-----TKTKTLDLGTAFHCRVLELEEFSNRFIVA 67 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDII-----WRHLFHKISHSFLEHEEKIQSSIEKIFV 883 PE N + + S + Sbjct: 68 PEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHA 127 Query: 884 NIPAKMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKETAQKLIDPQLSLEAAA 943 GI D+I +D+ K Q + + Sbjct: 128 ESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDG 187 Query: 944 LKAGSFSQIDCRKVANLFYIRLKQKFKIDCITNDKKKYSADELSEKSLKNLIEIVTLLQN 1003 +A Q + ++ ++ ++ A + ++ +NL + L Sbjct: 188 YEAQFGVQPTFVFLVAS-TTIECGRYPVEIFMMGEEAKLAGQ--QEYHRNLRTLSDCLNT 244 Query: 1004 GEQPFISHLRL 1014 E P I L L Sbjct: 245 DEWPAIKTLSL 255 >2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* Length = 680 Score = 43.0 bits (100), Expect = 4e-04 Identities = 39/306 (12%), Positives = 90/306 (29%), Gaps = 39/306 (12%) Query: 359 VALIEADNEREEAISIAIALRMSLDENKKKS--ALITADRNLARRVKLELTRFGINIDIS 416 ++L A NE +EA + ++ D + A++ +R ++ L + + I Sbjct: 318 ISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIY 377 Query: 417 AGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLAKFGFPEKYLSRAKNALELVAL 476 G+ S L I ND A +V P G ++ L Sbjct: 378 GGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTP--TRGIGDRTLDV---------- 425 Query: 477 RGNKNSYDIMDLKSLVLDRIATQKNNTHVPHWQSRLSEEDKELAVLLVDHILQCITPLVT 536 + + + + T + L E+ L + + Sbjct: 426 ----------------VRQTSRDRQLTLWQACRELLQEKA------LAGRAASALQRFME 463 Query: 537 YKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLPNLWFEEEGKTLSSLFSKIIETGS 596 ++ + T + + + + + L L + + Sbjct: 464 LIDALAQETADMPLHVQTDRVIKDSG--LRTMYEQEKGEKGQTRIENLEELVTATRQFSY 521 Query: 597 CIKANAIEWIDIITRLIDGETVKPKIEKSSTLFILGTLE-SRLLNFDTLILGGLNEGVWP 655 + + + E + + + L TL ++ L F + + G+ EG++P Sbjct: 522 NEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581 Query: 656 KNTAKN 661 + + Sbjct: 582 SQMSLD 587 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 35.7 bits (81), Expect = 0.054 Identities = 9/29 (31%), Positives = 20/29 (68%), Gaps = 6/29 (20%) Query: 869 EHE--EKIQSSIEKIFVN--IPAKMAIES 893 E + +K+Q+S+ K++ + PA +AI++ Sbjct: 18 EKQALKKLQASL-KLYADDSAPA-LAIKA 44 Score = 31.1 bits (69), Expect = 1.4 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 11/30 (36%) Query: 925 KKETAQKLIDPQLSLE--------AAALKA 946 +K+ +KL Q SL+ A A+KA Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKA 44 >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Length = 218 Score = 35.6 bits (81), Expect = 0.068 Identities = 20/186 (10%), Positives = 53/186 (28%), Gaps = 16/186 (8%) Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKR--GQCYLDWTRKLDYTTKQPHYKRPKPF 760 + I I + + R +V G + ++ + P+ Sbjct: 24 FADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK 83 Query: 761 PPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHNIITELI 820 L A E + I + Y ++ L K +R + + Sbjct: 84 NWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRT 143 Query: 821 KKRINKNTPEINHLMKQ-------------IIDSHFEKENLPPHIDIIWRHLFHKISHSF 867 +R + + ++ +ID++ + + + + H +++ F Sbjct: 144 MQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHYL-QLASQF 202 Query: 868 LEHEEK 873 + E+ Sbjct: 203 VSQEKP 208 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 34.0 bits (77), Expect = 0.17 Identities = 99/451 (21%), Positives = 163/451 (36%), Gaps = 127/451 (28%) Query: 489 KSLVLDRIATQKNNTHVPH-WQSR--------LSEEDKELAVLLVD----HILQCIT-PL 534 K+L DR+ + +P W ++ +S+ D +LV I IT P Sbjct: 978 KALRFDRLVAGQ----IPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPY 1033 Query: 535 VTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRKLP---NLWFEEEGKTLSSLFSKI 591 YK S GN S S V+ L+ + D + P ++ E T+S+ + + Sbjct: 1034 EMYKYVHVSEVGNCSGSGMGG--VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNML 1091 Query: 592 -------IET--GSCIKANAIEWIDI-ITRLIDGETVKPKI----------EKSSTLFIL 631 I+T G+C A ++E +DI + ++ G K +I E+ S F Sbjct: 1092 LISSSGPIKTPVGAC--ATSVESVDIGVETILSG---KARICIVGGYDDFQEEGS--FEF 1144 Query: 632 GTLESRLLNFDTLILGGL-NEGVWPKNTAKNPFLSR-------VMQSDLNLK-------- 675 G +++ + G E P T +N F+ +MQ+DL LK Sbjct: 1145 GNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1204 Query: 676 -----TAEKYIGQAAHDFEMANGTRHLIYTR----SLRENNIPTIASRWLQRLLVLGGTD 726 TA IG++ A G L R S++ + P + ++ +R LV Sbjct: 1205 VAMAATATDKIGRSVP----APGKGILTTAREHHSSVKYAS-PNLNMKYRKRQLV----- 1254 Query: 727 FFDNLKKRGQCYLDWTRKLDYTTKQPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVY 786 + Q DW + K P E Q + +++ N+ + Sbjct: 1255 -----TREAQIK-DWVE-----NELEALKLEAEEIPSEDQ-NEFLLERTREIHNEAESQL 1302 Query: 787 --ARRILKLDFIPHFKKDPDRTD-RGTL--------------FHNIITELIKKRINKN-T 828 A++ DF +K+DP RG L FH T K +KN + Sbjct: 1303 RAAQQQWGNDF---YKRDPRIAPLRGALATYGLTIDDLGVASFHGTST----KANDKNES 1355 Query: 829 PEINHLMKQIIDSHFEKENLPPHIDIIWRHL 859 IN +MK H + P I + + L Sbjct: 1356 ATINEMMK-----HLGRSEGNPVIGVFQKFL 1381 >3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} Length = 266 Score = 32.7 bits (74), Expect = 0.42 Identities = 18/160 (11%), Positives = 33/160 (20%), Gaps = 29/160 (18%) Query: 771 SFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDR-TDRGTLFHNIITELIK--KRINKN 827 S S K + ++ + G+ + + K+ N Sbjct: 20 SVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPE 79 Query: 828 TPEINHLMKQIIDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPA 887 +K + I I R + +K ++F Sbjct: 80 IFTQKGELKA------NFKQAEEIIARIERDEYFM----KYMSGQKQVIMTGELF----- 124 Query: 888 KMAIESIGIHLTGFADRIDLLKSGFVDITDYKTGDNPKKE 927 G D V I D K + Sbjct: 125 -------GAKWKIKMDSYI----PGVAIVDLKVMASITDL 153 >2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Length = 189 Score = 31.9 bits (72), Expect = 0.79 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 38/166 (22%) Query: 160 ETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIA------ 213 E E L LKN + + + + + S+ IA Sbjct: 46 EHSLTFEEVLKGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKN 105 Query: 214 LMRAEAEHLMKGTKGPIIIAGSTGSIPATARLMSTVANHPNGAIVLPGLDCHIPTAIWNT 273 L+ E +K +++ M + G +V+P Sbjct: 106 LIHRVGEVALKERVPLVLLVREAPYNEIHLENMLKITRM--GGVVVP------------- 150 Query: 274 ITEKSTNITSSNTTYSTHPQ-------YSLAKLLDFLDIKREDVKR 312 ++ + PQ + + KLLD L I+ KR Sbjct: 151 ----------ASPAFYHKPQSIDDMINFVVGKLLDVLRIEHNLYKR 186 >1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A* Length = 426 Score = 31.7 bits (72), Expect = 0.90 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 791 LKLDFIPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQI-IDSHFEKENLP 849 L LDF P P D TL H I + I+H + ++F ++ Sbjct: 134 LGLDFNPSCFSHPLSADGFTLSH------ADDSIRQFW--IDHCKASRRVSAYFGEQLGT 185 Query: 850 PHIDIIWRHLFHK-ISHSFLEHEEKIQSSIEKIFVNIPAKM----AIES 893 P + IW K I+ L +++ ++++++ A+ES Sbjct: 186 PSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVES 234 >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, PSI, MCSG; 2.00A {Saccharomyces cerevisiae} Length = 254 Score = 31.1 bits (71), Expect = 1.2 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 37/165 (22%) Query: 141 SPANAIWLAKNLADIIDIIE---TEEKKWEDLHALKNEKYGMWWLL---------AADFL 188 S A L + D + TE+ + L + +G L + Sbjct: 37 SEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVN 96 Query: 189 KIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIP-------- 240 +I W ++L ++N S V +L+ L K + ++ ++ Sbjct: 97 EIDVNAW-KKLYDINFFSIV----SLVGIALPELKKTNGNVVFVSSDACNMYFSSWGAYG 151 Query: 241 ----ATARLMSTVANHPNGAI----VLPGLDCHIPTAIWNTITEK 277 A T+AN + V PG+ + T + I E Sbjct: 152 SSKAALNHFAMTLANEERQ-VKAIAVAPGI---VDTDMQVNIREN 192 >2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} Length = 236 Score = 31.0 bits (70), Expect = 1.5 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 21/91 (23%) Query: 831 INHLMKQI-------------IDSHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSS 877 + LM+ + F + + I I R LF +H + H +I Sbjct: 136 VECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILEL 195 Query: 878 IEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 + +N + H FA +LL Sbjct: 196 NLQTVLNTSFR--------HFCLFAQEFELL 218 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Length = 256 Score = 30.3 bits (68), Expect = 2.1 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%) Query: 388 KSALITADRNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIA 447 K+A+I+ ++ L R GIN++ A + + + Sbjct: 156 KAAVISLTQSAGL----NLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQ 211 Query: 448 TLVKHPLAKFGFPE 461 P + G E Sbjct: 212 VGAAVPFGRMGRAE 225 >2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Length = 242 Score = 30.3 bits (67), Expect = 2.4 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 6/123 (4%) Query: 97 YNLNPPVSNIQRLLELARLILIWRNKLPDIIKDLYPESPLSLPISPANAIWLAKNLADII 156 P + ++ I K + SP + I I Sbjct: 100 LVFAPYYEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMINGFHKPNFCI 159 Query: 157 DIIETEEKKWEDLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMR 216 DI E K E L A +++ ++ + E ++ G ++ ++ Sbjct: 160 DISEYLSIKVEALEAYESQFSTGSD----GVKTPLTEGYVETVIAREKM--FGKEVGVLY 213 Query: 217 AEA 219 AE Sbjct: 214 AEG 216 >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 Score = 30.1 bits (67), Expect = 2.6 Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 14/151 (9%) Query: 113 ARLILIWRN-----KLPDIIKDLYPESPLSLPISPANAIWLAKNLADIIDIIETEEKKWE 167 A + + ++ KLP I + A + + + + Sbjct: 31 ANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK-CDIREEDQVRAAVAATVDTFG 89 Query: 168 DLHALKNEKYGMWWLLAADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTK 227 + L N +W L K + + + ++NA +A HL++ Sbjct: 90 GIDILVNNASAIWL---RGTLDTPMKRF-DLMQQVNARGS----FVCAQACLPHLLQAPN 141 Query: 228 GPIIIAGSTGSIPATARLMSTVANHPNGAIV 258 I+ S+ T + Sbjct: 142 PHILTLAPPPSLNPAWWGAHTGYTLAKMGMS 172 >1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A Length = 185 Score = 30.2 bits (68), Expect = 2.7 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 21/102 (20%) Query: 820 IKKRINKNTPE-INHLMKQIID-----SHFEKE-------NLPPHIDIIWRHLFHKISHS 866 IKK I + P+ I++LM + D + F + N I + LF +H Sbjct: 72 IKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHI 131 Query: 867 FLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTGFADRIDLL 908 + +H + + E+ +N K H F +L+ Sbjct: 132 YHQHFDSVMQLQEEAHLNTSFK--------HFIFFVQEFNLI 165 >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus} Length = 281 Score = 28.9 bits (64), Expect = 6.4 Identities = 14/186 (7%), Positives = 40/186 (21%), Gaps = 24/186 (12%) Query: 703 LRENNIPTIASRWLQRLLVLGGTDFFDNLKKR---GQCYLDWTRKLDYTTKQPH-----Y 754 L+ I S L G + + + + D T + Sbjct: 95 LKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQM 154 Query: 755 KRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRILKLDFIPHFKKDPDRTDRGTLFHN 814 K ++ V + ++ + Sbjct: 155 KILTDIVWPVIAKLAREEMDVAVAKGKTLCVI---DAAMLLEAGWQSMVHEVWTVVIPET 211 Query: 815 IITELIKKRINKNTPEINHLMKQ-------------IIDSHFEKENLPPHIDIIWRHLFH 861 I +R + ++ ++ + +E ++ W L Sbjct: 212 EAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQK 271 Query: 862 KISHSF 867 ++ ++ Sbjct: 272 RLPKAY 277 >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 Score = 28.7 bits (65), Expect = 6.9 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 5/74 (6%) Query: 185 ADFLKIASKYWTERLVELNASSPVGYQIALMRAEAEHLMKGTKGPIIIAGSTGSIPATAR 244 D L+ W +++ +N RA ++ G I+ GS Sbjct: 99 HDALETDDATW-RQVMAVNVDGMF----WASRAFGRAMVARGAGAIVNLGSMSGTIVNRP 153 Query: 245 LMSTVANHPNGAIV 258 ++ GA+ Sbjct: 154 QFASSYMASKGAVH 167 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 9,014,476 Number of extensions: 433220 Number of successful extensions: 1390 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1380 Number of HSP's successfully gapped: 37 Length of query: 1040 Length of database: 5,693,230 Length adjustment: 102 Effective length of query: 938 Effective length of database: 3,220,342 Effective search space: 3020680796 Effective search space used: 3020680796 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.0 bits)