HHsearch alignment for GI: 254780824 and conserved domain: PRK08118
>PRK08118 topology modulation protein; Reviewed.
Probab=95.47 E-value=0.017 Score=35.80 Aligned_cols=83 Identities=25% Similarity=0.149 Sum_probs=46.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEEC
Q ss_conf 99998787868899999999760788853024520201100378860899986517897775305836750897899998
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEW 114 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIEW 114 (162)
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ip~--------~~LD~l~-------w~~~w~~~~~~e~~~~-~~~~~~~~~WIidG 66 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV--------HHLDALF-------WKPNWEGVPKEEQRTV-QNELVKEDEWIIDG 66 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE--------EECCCEE-------ECCCCCCCCHHHHHHH-HHHHHHCCCEEEEC
T ss_conf 799988999879999999999889697--------9644347-------6689946888999999-99998389879947
Q ss_pred --HHHHHCCCCCCEEEEEEEE
Q ss_conf --5563204995409999987
Q gi|254780824|r 115 --PEIGRSLLPKKYIDIHLSQ 133 (162)
Q Consensus 115 --pe~~~~~lp~~~i~I~i~~ 133 (162)
T Consensus 67 ny~~~~~~r~~~aD~iI~Ld~ 87 (167)
T PRK08118 67 NYGGTMDIRLNAADTIIFLDI 87 (167)
T ss_pred CCHHHHHHHHHHCCEEEEECC
T ss_conf 717799877976999999859