HHsearch alignment for GI: 254780824 and conserved domain: PRK08118

>PRK08118 topology modulation protein; Reviewed.
Probab=95.47  E-value=0.017  Score=35.80  Aligned_cols=83  Identities=25%  Similarity=0.149  Sum_probs=46.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCCCCEEEEEC
Q ss_conf             99998787868899999999760788853024520201100378860899986517897775305836750897899998
Q gi|254780824|r   35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDASIPVAHFDFYRLSSHQEVVELGFDEILNERICIIEW  114 (162)
Q Consensus        35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~~~i~lIEW  114 (162)
T Consensus         3 rI~IiG~~GsGKSTlAr~L~~~~~ip~--------~~LD~l~-------w~~~w~~~~~~e~~~~-~~~~~~~~~WIidG   66 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPV--------HHLDALF-------WKPNWEGVPKEEQRTV-QNELVKEDEWIIDG   66 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCE--------EECCCEE-------ECCCCCCCCHHHHHHH-HHHHHHCCCEEEEC
T ss_conf             799988999879999999999889697--------9644347-------6689946888999999-99998389879947


Q ss_pred             --HHHHHCCCCCCEEEEEEEE
Q ss_conf             --5563204995409999987
Q gi|254780824|r  115 --PEIGRSLLPKKYIDIHLSQ  133 (162)
Q Consensus       115 --pe~~~~~lp~~~i~I~i~~  133 (162)
T Consensus        67 ny~~~~~~r~~~aD~iI~Ld~   87 (167)
T PRK08118         67 NYGGTMDIRLNAADTIIFLDI   87 (167)
T ss_pred             CCHHHHHHHHHHCCEEEEECC
T ss_conf             717799877976999999859