HHsearch alignment for GI: 254780824 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=93.33 E-value=0.26 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=19.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8996999987878688999999997607
Q gi|254780824|r 31 RLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 31 ~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
T Consensus 486 rPigsFlf~GPTGVGKTElak~LA~~L~ 513 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9705899978998777999999999986