>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.

Probab=95.68 E-value=0.016 Score=35.88 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=48.2 Q ss_pred HHHHHHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC-------C-CCCEEEEEEEC Q ss_conf 9999999845899---69999878786889999999976078885302452020110037-------8-86089998651 Q gi|254780824|r 21 CLGRHLASILRLG---DCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYD-------A-SIPVAHFDFYR 89 (162) Q Consensus 21 ~la~~la~~l~~g---~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~-------~-~~~i~H~DlYR 89 (162) T Consensus 21 ~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~-----~~~~PCn~C~~C~~i~~g~~~DviEiDAAS 94 (363) T TIGR02397 21 HIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ-G-----PDGEPCNECESCKEINSGSSLDVIEIDAAS 94 (363) T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-C-----CCCCCCCCCCHHHHHHCCCCCCEEEECCCC T ss_conf 9999999999718966234502859976355899999986588-7-----877877775022776528986668864865 Q ss_pred CCCHHHHHCC Q ss_conf 7897775305 Q gi|254780824|r 90 LSSHQEVVEL 99 (162) Q Consensus 90 L~~~~E~~~l 99 (162) T Consensus 95 N~gVD~IR~l 104 (363) T TIGR02397 95 NNGVDDIREL 104 (363) T ss_pred CCCHHHHHHH T ss_conf 6878899999

HHsearch alignment for GI: 254780824 and conserved domain: TIGR02397