HHsearch alignment for GI: 254780824 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.49 E-value=0.0022 Score=41.14 Aligned_cols=126 Identities=15% Similarity=0.241 Sum_probs=65.8
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC---C-CCEEEEEEECCCC-HHHH
Q ss_conf 999999845899699998787868899999999760788853024520201100378---8-6089998651789-7775
Q gi|254780824|r 22 LGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLYDA---S-IPVAHFDFYRLSS-HQEV 96 (162)
Q Consensus 22 la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y~~---~-~~i~H~DlYRL~~-~~E~ 96 (162)
T Consensus 147 ~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ER--~i----TIED~~E~~~~hhpN~V~L--~ysk~v~~g~ 218 (328)
T TIGR02788 147 IKEFLRLAIASRKNIIISGGTGSGKTTFLKALVKEIPKDER--LI----TIEDTRELFLPHHPNKVHL--FYSKGVGQGS 218 (328)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCC--EE----EEEEEECCCCCCCCCEEEE--EECCCCCCCC
T ss_conf 87999999873891999906897189999999732762252--78----8852011478889864565--5346423443
Q ss_pred HCCCHHHHCCCCEEEEECHHHHH--CCCCCCEE-EEEE-EECCCEEEEEEEECC--HHHHHHHHHHH
Q ss_conf 30583675089789999855632--04995409-9999-873987699999586--08999999999
Q gi|254780824|r 97 VELGFDEILNERICIIEWPEIGR--SLLPKKYI-DIHL-SQGKTGRKATISAER--WIISHINQMNR 157 (162)
Q Consensus 97 ~~lg~~e~~~~~i~lIEWpe~~~--~~lp~~~i-~I~i-~~~~~~R~i~i~~~~--~~~~~l~~~~~ 157 (162)
T Consensus 219 ~~vt~~~Ll~scLRM--rPDRI~LgELRG~Eaf~F~~~~nsGHpGsiTT~HA~s~~~Af~qla~l~k 283 (328)
T TIGR02788 219 AKVTPKDLLESCLRM--RPDRILLGELRGDEAFDFIRAVNSGHPGSITTVHAGSPEEAFEQLALLVK 283 (328)
T ss_pred CCCCHHHHHHHHHCC--CCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 568989999997117--74057674303325788887520598860567871898999999999872