HHsearch alignment for GI: 254780824 and conserved domain: cd00154

>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.52  E-value=0.1  Score=31.04  Aligned_cols=83  Identities=12%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf             9998787868899999999760788853024520201---1003788608999865178977753058367508--9789
Q gi|254780824|r   36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL---VQLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC  110 (162)
Q Consensus        36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l---~~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~  110 (162)
T Consensus         3 i~vvG~~~vGKTsli~~~~~~~f~~~----~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~~~l-~~~~~~~~d~~i   77 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI-TPSYYRGAHGAI   77 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHH-HHHHHHHCCEEE
T ss_conf             99999699689999999970999998----4886664799999999999999999978982657788-999975412756


Q ss_pred             EE-------------ECHHHHHCCCC
Q ss_conf             99-------------98556320499
Q gi|254780824|r  111 II-------------EWPEIGRSLLP  123 (162)
Q Consensus       111 lI-------------EWpe~~~~~lp  123 (162)
T Consensus        78 lv~d~~~~~Sf~~~~~~~~~i~~~~~  103 (159)
T cd00154          78 LVYDITNRESFENLDKWLKELKEYAP  103 (159)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             72448988999999999999998689