HHsearch alignment for GI: 254780824 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.10 E-value=0.1 Score=31.07 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 84589969999878786889999999976078
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
T Consensus 8 gG~~~G~L~vi~a~~g~GKS~~~~~la~~~a~ 39 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAK 39 (242)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 69999818999968999999999999999999