HHsearch alignment for GI: 254780824 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=93.27  E-value=0.15  Score=30.03  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             9999999845899699998787868899999999760788
Q gi|254780824|r   21 CLGRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD   60 (162)
Q Consensus        21 ~la~~la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~   60 (162)
T Consensus         7 ~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~   46 (218)
T cd01394           7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ   46 (218)
T ss_pred             HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             8999856998788799998999984999999999998636