HHsearch alignment for GI: 254780824 and conserved domain: cd01870
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.11 E-value=0.28 Score=28.43 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=47.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf 999987878688999999997607888530245202011003----788608999865178977753058367508-978
Q gi|254780824|r 35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI 109 (162)
Q Consensus 35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i 109 (162)
T Consensus 3 Ki~liGd~~VGKTsli~r~~~~~F~~----~y~pTi--~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ 76 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTV--FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 76 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEE
T ss_conf 99999989966999999997098999----847843--689999999999999999997776613232404431488789
Q ss_pred EEE-------------E-CHHHHHCCCCC
Q ss_conf 999-------------9-85563204995
Q gi|254780824|r 110 CII-------------E-WPEIGRSLLPK 124 (162)
Q Consensus 110 ~lI-------------E-Wpe~~~~~lp~ 124 (162)
T Consensus 77 ilvydi~~~~Sf~~~~~~w~~~i~~~~~~ 105 (175)
T cd01870 77 LMCFSIDSPDSLENIPEKWTPEVKHFCPN 105 (175)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99986598799999999999999972989