HHsearch alignment for GI: 254780824 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.11  E-value=0.28  Score=28.43  Aligned_cols=84  Identities=18%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC----CCCCCEEEEEEECCCCHHHHHCCCHHHHCC-CCE
Q ss_conf             999987878688999999997607888530245202011003----788608999865178977753058367508-978
Q gi|254780824|r   35 CLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLVQLY----DASIPVAHFDFYRLSSHQEVVELGFDEILN-ERI  109 (162)
Q Consensus        35 ii~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~~~Y----~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~-~~i  109 (162)
T Consensus         3 Ki~liGd~~VGKTsli~r~~~~~F~~----~y~pTi--~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~~~~~~~~~a~~~   76 (175)
T cd01870           3 KLVIVGDGACGKTCLLIVFSKDQFPE----VYVPTV--FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI   76 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC----CCCCCE--EEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHCCCCEE
T ss_conf             99999989966999999997098999----847843--689999999999999999997776613232404431488789


Q ss_pred             EEE-------------E-CHHHHHCCCCC
Q ss_conf             999-------------9-85563204995
Q gi|254780824|r  110 CII-------------E-WPEIGRSLLPK  124 (162)
Q Consensus       110 ~lI-------------E-Wpe~~~~~lp~  124 (162)
T Consensus        77 ilvydi~~~~Sf~~~~~~w~~~i~~~~~~  105 (175)
T cd01870          77 LMCFSIDSPDSLENIPEKWTPEVKHFCPN  105 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99986598799999999999999972989