HHsearch alignment for GI: 254780824 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.66 E-value=0.013 Score=36.42 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=28.2
Q ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 845899699998787868899999999760788
Q gi|254780824|r 28 SILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 23 l~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p~ 55 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 998599899999999983999999997677589