>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=94.75  E-value=0.035  Score=33.88  Aligned_cols=30  Identities=37%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             HHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             845899699998787868899999999760
Q gi|254780824|r   28 SILRLGDCLTLSGDLGSGKSFLARSIIRFL   57 (162)
Q Consensus        28 ~~l~~g~ii~L~GdLGaGKTtfvr~i~~~l   57 (162)
T Consensus        21 ~~i~~Ge~~~ivGpSG~GKSTllr~i~Gl~   50 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             698899899999999983999999998599