HHsearch alignment for GI: 254780824 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.54 E-value=0.017 Score=35.75 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=26.1
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 4589969999878786889999999976078
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH 59 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~ 59 (162)
T Consensus 17 ~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~ 47 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGK 47 (176)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8889989999999999899999988876103