HHsearch alignment for GI: 254780824 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.54  E-value=0.017  Score=35.75  Aligned_cols=31  Identities=26%  Similarity=0.208  Sum_probs=26.1

Q ss_pred             HCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             4589969999878786889999999976078
Q gi|254780824|r   29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMH   59 (162)
Q Consensus        29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~   59 (162)
T Consensus        17 ~i~~Ge~~~iiG~nGsGKSTLl~~~~~~~~~   47 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLYASGK   47 (176)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             8889989999999999899999988876103