HHsearch alignment for GI: 254780824 and conserved domain: cd03245
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.62 E-value=0.014 Score=36.34 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.8
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 45899699998787868899999999760788
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 26 ~i~~G~~v~ivG~sGsGKSTLl~ll~gl~~p~ 57 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 98799999999999985999999996725478