HHsearch alignment for GI: 254780824 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.52 E-value=0.016 Score=35.93 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=28.9
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99845899699998787868899999999760788
Q gi|254780824|r 26 LASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHD 60 (162)
Q Consensus 26 la~~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg~~ 60 (162)
T Consensus 33 is~~i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~p~ 67 (226)
T cd03248 33 VSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 38998299999999999984999999996454678