HHsearch alignment for GI: 254780824 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.20 E-value=0.055 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.198 Sum_probs=23.9
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 458996999987878688999999997607
Q gi|254780824|r 29 ILRLGDCLTLSGDLGSGKSFLARSIIRFLM 58 (162)
Q Consensus 29 ~l~~g~ii~L~GdLGaGKTtfvr~i~~~lg 58 (162)
T Consensus 17 ~i~~Ge~~aIvG~nGsGKSTL~~~~l~~~g 46 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAFDTIYAEG 46 (226)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 985998999987899609898361663323