HHsearch alignment for GI: 254780824 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=94.92 E-value=0.11 Score=30.83 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH-----HHHHCCC---CCCEEEEEEECCCCHHHHHCCCHHHHCC-
Q ss_conf 999878786889999999976078885302452020-----1100378---8608999865178977753058367508-
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFT-----LVQLYDA---SIPVAHFDFYRLSSHQEVVELGFDEILN- 106 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~-----l~~~Y~~---~~~i~H~DlYRL~~~~E~~~lg~~e~~~- 106 (162)
T Consensus 3 IlllGDsgVGKTSL~~~~~~~~f~~~----~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~sl-~~~yYr~ 77 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST-RAVFYNQ 77 (202)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC----CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHHHH-HHHHHCC
T ss_conf 99999999899999999983988888----888503678999999337876783899999989987757767-8997588
Q ss_pred -CCEEEE
Q ss_conf -978999
Q gi|254780824|r 107 -ERICII 112 (162)
Q Consensus 107 -~~i~lI 112 (162)
T Consensus 78 a~gvILV 84 (202)
T cd04102 78 VNGIILV 84 (202)
T ss_pred CCEEEEE
T ss_conf 9899999