HHsearch alignment for GI: 254780824 and conserved domain: cd04114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.20 E-value=0.16 Score=29.91 Aligned_cols=86 Identities=14% Similarity=0.229 Sum_probs=49.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH---HHCCCCCCEEEEEEECCCCHHHHHCCCHHHHCC--CCEE
Q ss_conf 99987878688999999997607888530245202011---003788608999865178977753058367508--9789
Q gi|254780824|r 36 LTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTLV---QLYDASIPVAHFDFYRLSSHQEVVELGFDEILN--ERIC 110 (162)
Q Consensus 36 i~L~GdLGaGKTtfvr~i~~~lg~~~~~~V~SPTF~l~---~~Y~~~~~i~H~DlYRL~~~~E~~~lg~~e~~~--~~i~ 110 (162)
T Consensus 10 ivllGd~~VGKTsli~r~~~~~f~~~----~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~-~~~~~~a~~~i 84 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT-QSYYRSANALI 84 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCH-HHHHHCCCEEE
T ss_conf 99999899799999999985989998----67741247899999999999999999899984445155-77742366459
Q ss_pred EE-------------ECHHHHHCCCCCCE
Q ss_conf 99-------------98556320499540
Q gi|254780824|r 111 II-------------EWPEIGRSLLPKKY 126 (162)
Q Consensus 111 lI-------------EWpe~~~~~lp~~~ 126 (162)
T Consensus 85 lvydvt~~~Sf~~l~~w~~~i~~~~~~~~ 113 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKV 113 (169)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98148988899999999999998689886